BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023552
(280 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94306|YCGJ_SCHPO Uncharacterized protein C16C4.19 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC16C4.19 PE=4 SV=1
Length = 184
Score = 38.5 bits (88), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 50 LAVWASSETSVPSLAALFGHRLASANEVLGLQPDPS--FFSCQRCETVLQPGFNCTIRIE 107
L++ A + PSL++ + R+ S E L+ DP C +C ++ G N +R
Sbjct: 11 LSIAAETYAISPSLSSHYLRRMFSLLEEWNLETDPKTLLHGCSKCGSLFIFGRNIKLRTI 70
Query: 108 KNQVKSRRRWKKPKTSMQNT-VVYKCHFCSH-HNLKRGTPV 146
++ K+R KK + S T + C CS+ H + G P+
Sbjct: 71 SSERKARTDLKKGEVSRLGTNLEINCLVCSYVHEIPLGVPL 111
>sp|O27655|RNP4_METTH Ribonuclease P protein component 4 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rnp4 PE=1 SV=1
Length = 140
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 17/49 (34%)
Query: 89 CQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSH 137
C++C + L+PG NCT+RI +V ++CH C H
Sbjct: 63 CRKCYSFLKPGANCTVRIADGKVN-----------------FRCHECGH 94
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 135 CSHHNLKRGTPVGHMKEICPMKAKPSSRPQCGSKSPLKRSANTT 178
C H K G PV ++KE P KP S+P + L ++ NTT
Sbjct: 1049 CRHLCCKEGIPVKYIKEKGPSSIKPVSKPDQIRQPLLAKNINTT 1092
>sp|Q53LQ0|PDI11_ORYSJ Protein disulfide isomerase-like 1-1 OS=Oryza sativa subsp.
japonica GN=PDIL1-1 PE=2 SV=1
Length = 512
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 147 GHMKEICPMKAKPSSRPQCGSKSPLKRSANTTKDTRSKDEVSKVDDEALPSI------SK 200
GH K++ P K +++ P+ + D ++K +K + + P++ K
Sbjct: 70 GHCKKLAPEYEK-AAQELSKHDPPIVLAKVDANDEKNKPLATKYEIQGFPTLKIFRNQGK 128
Query: 201 NCVETP-PLKSRITLEGKKRRRKSGNKNSAESESNSAVTDDK---TVGVSSRRRRTSWTS 256
N E P ++ +E K++ +K E + + DDK VG+ S T +T+
Sbjct: 129 NIQEYKGPREAEGIVEYLKKQVGPASKEIKSPEDATNLIDDKKIYIVGIFSELSGTEYTN 188
Query: 257 LKEIAE--RSEDDNGR 270
E+AE RS+ D G
Sbjct: 189 FIEVAEKLRSDYDFGH 204
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.125 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,887,308
Number of Sequences: 539616
Number of extensions: 3796291
Number of successful extensions: 10640
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 10552
Number of HSP's gapped (non-prelim): 167
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)