Query 023552
Match_columns 280
No_of_seqs 119 out of 149
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 08:47:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x0t_A Ribonuclease P protein 99.9 9.3E-23 3.2E-27 166.7 10.7 91 39-145 18-110 (120)
2 2k3r_A Ribonuclease P protein 99.9 1.9E-22 6.3E-27 165.9 9.2 91 39-145 13-105 (123)
3 3qt1_I DNA-directed RNA polyme 78.7 1.1 3.8E-05 37.0 2.6 35 86-141 24-58 (133)
4 3h0g_I DNA-directed RNA polyme 78.2 1.1 3.7E-05 35.6 2.4 36 86-142 4-39 (113)
5 1twf_I B12.6, DNA-directed RNA 72.8 1.9 6.6E-05 34.6 2.5 36 86-142 4-39 (122)
6 3j21_g 50S ribosomal protein L 66.6 2 6.9E-05 30.6 1.2 15 85-99 13-27 (51)
7 3na7_A HP0958; flagellar bioge 48.1 1.8 6E-05 38.2 -2.2 61 61-142 175-235 (256)
8 1pqv_S STP-alpha, transcriptio 41.7 51 0.0017 30.1 6.4 15 127-141 294-308 (309)
9 1k81_A EIF-2-beta, probable tr 41.6 27 0.00091 22.7 3.3 17 125-141 17-33 (36)
10 1pcx_A Protein transport prote 41.6 8.9 0.00031 39.4 1.5 35 87-142 113-147 (810)
11 1vzy_A 33 kDa chaperonin; chap 40.1 11 0.00038 34.3 1.8 19 125-143 261-279 (291)
12 1m2v_B SEC24, protein transpor 40.1 9.8 0.00034 40.0 1.6 35 87-142 229-263 (926)
13 3eh1_A Protein transport prote 38.5 10 0.00035 38.7 1.4 36 86-143 85-120 (751)
14 2lvu_A Zinc finger and BTB dom 43.5 7.1 0.00024 20.7 0.0 21 130-150 3-23 (26)
15 3eh2_A Protein transport prote 37.0 13 0.00044 38.1 1.8 38 87-145 95-132 (766)
16 3efo_B SEC24 related gene fami 36.3 10 0.00035 38.8 1.0 37 87-144 99-135 (770)
17 1vq0_A 33 kDa chaperonin; TM13 35.8 15 0.0005 33.9 1.8 18 125-143 269-286 (302)
18 2k4x_A 30S ribosomal protein S 35.2 23 0.00079 25.0 2.4 31 86-141 18-48 (55)
19 1yuz_A Nigerythrin; rubrythrin 34.6 60 0.002 27.8 5.4 59 39-99 115-183 (202)
20 2ayj_A 50S ribosomal protein L 32.6 17 0.00057 26.5 1.3 15 85-99 18-32 (56)
21 2yrc_A Protein transport prote 32.4 32 0.0011 24.6 2.8 41 86-147 9-51 (59)
22 1a6b_B Momulv, zinc finger pro 30.7 41 0.0014 22.5 2.9 29 130-166 11-39 (40)
23 1i7f_A Heat shock protein 33; 30.6 11 0.00036 34.6 0.0 22 125-146 256-277 (292)
24 2lvt_A Zinc finger and BTB dom 35.9 11 0.00038 20.2 0.0 21 130-150 3-23 (29)
25 2eod_A TNF receptor-associated 29.6 14 0.00047 24.5 0.5 31 127-157 34-65 (66)
26 3j20_Y 30S ribosomal protein S 29.0 27 0.00092 24.2 1.9 9 86-94 19-27 (50)
27 1u6p_A GAG polyprotein; MLV, A 28.1 51 0.0017 23.5 3.2 29 130-166 24-52 (56)
28 2lvr_A Zinc finger and BTB dom 33.6 13 0.00044 19.9 0.0 21 130-150 4-24 (30)
29 3po3_S Transcription elongatio 25.7 80 0.0027 26.8 4.6 15 127-141 163-177 (178)
30 2kfq_A FP1; protein, de novo p 24.0 12 0.00042 21.1 -0.5 22 130-151 3-24 (32)
31 3pwf_A Rubrerythrin; non heme 22.8 34 0.0012 28.7 1.7 13 128-140 137-149 (170)
32 1twf_L ABC10-alpha, DNA-direct 22.2 29 0.00099 25.8 1.0 17 126-142 25-41 (70)
33 3jyw_9 60S ribosomal protein L 22.0 26 0.0009 26.4 0.8 16 127-142 24-39 (72)
34 2nut_A Protein transport prote 21.0 32 0.0011 35.1 1.4 38 86-144 62-101 (769)
35 1qyp_A RNA polymerase II; tran 20.9 39 0.0013 23.3 1.4 14 127-140 41-54 (57)
36 3e0o_A Peptide methionine sulf 20.2 97 0.0033 26.1 4.0 39 86-138 42-99 (144)
37 4a17_Y RPL37A, 60S ribosomal p 20.0 32 0.0011 27.7 1.0 16 127-142 34-49 (103)
No 1
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=99.88 E-value=9.3e-23 Score=166.68 Aligned_cols=91 Identities=21% Similarity=0.237 Sum_probs=79.5
Q ss_pred ccHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh--CCCCCcccccCcCCCcccccCCceEEEEEecchhcccc
Q 023552 39 KSKLELEHLQRLAVWASSETSVPSLAALFGHRLASANEVL--GLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRR 116 (280)
Q Consensus 39 ~s~lRiehL~nLA~~A~~ea~~PsLSr~Y~r~l~~vseK~--~Lpp~~kR~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr 116 (280)
..++||+|||++|+++. ...|+||++|+..+..+++++ +|||+++|+||++|+++||||+||+|||+++
T Consensus 18 ia~~Ri~~L~~~A~~~~--~~~p~lSr~Y~~~~~~is~k~~irlp~~~KR~~Ck~C~s~LiPG~t~~vri~~~------- 88 (120)
T 1x0t_A 18 IAIERIDTLFTLAERVA--RYSPDLAKRYVELALEIQKKAKVKIPRKWKRRYCKRCHTFLIPGVNARVRLRTK------- 88 (120)
T ss_dssp HHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHTCCCCTTTTTSBCTTTCCBCCBTTTEEEEEECS-------
T ss_pred HHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhccCCCHHHHHHhccCCCCEeECCCceEEEEecC-------
Confidence 45899999999999874 356899999999999999999 7788888999999999999999999999942
Q ss_pred cCCCCCCCCCeEEEecCCCCCcccccCCC
Q 023552 117 WKKPKTSMQNTVVYKCHFCSHHNLKRGTP 145 (280)
Q Consensus 117 ~Kk~~~~~~n~VV~tCl~CG~~n~~rGt~ 145 (280)
....|||+|+.||++++|.=..
T Consensus 89 -------~~~~vv~tCl~Cg~~kR~p~~~ 110 (120)
T 1x0t_A 89 -------RMPHVVITCLECGYIMRYPYLR 110 (120)
T ss_dssp -------SSCEEEEEETTTCCEEEEECC-
T ss_pred -------CccEEEEECCCCCCEEEEccCc
Confidence 1248999999999999987543
No 2
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=99.87 E-value=1.9e-22 Score=165.85 Aligned_cols=91 Identities=21% Similarity=0.271 Sum_probs=78.7
Q ss_pred ccHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh--CCCCCcccccCcCCCcccccCCceEEEEEecchhcccc
Q 023552 39 KSKLELEHLQRLAVWASSETSVPSLAALFGHRLASANEVL--GLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRR 116 (280)
Q Consensus 39 ~s~lRiehL~nLA~~A~~ea~~PsLSr~Y~r~l~~vseK~--~Lpp~~kR~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr 116 (280)
..++||++||++|+++.. ..|+||++|+..+..|++++ +|||+++|+||++|+++||||+||+|||+++
T Consensus 13 ia~~Ri~~L~~~A~~~~~--~~p~LSr~Y~~~~~~Is~K~~irlp~~~KR~~Ck~C~s~LIPG~t~~vri~~~------- 83 (123)
T 2k3r_A 13 IAKERIDILFSLAERVFP--YSPELAKRYVELALLVQQKAKVKIPRKWKRRYCKKCHAFLVPGINARVRLRQK------- 83 (123)
T ss_dssp --CHHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHTCCCSSTTTTSBCTTTCCBCCBTTTEEEEEECS-------
T ss_pred HHHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHhccCCCHHHHHHhccCCCCEeECCCceEEEEecC-------
Confidence 468999999999998742 46899999999999999999 6788888999999999999999999999942
Q ss_pred cCCCCCCCCCeEEEecCCCCCcccccCCC
Q 023552 117 WKKPKTSMQNTVVYKCHFCSHHNLKRGTP 145 (280)
Q Consensus 117 ~Kk~~~~~~n~VV~tCl~CG~~n~~rGt~ 145 (280)
....|||+|+.||++++|.=..
T Consensus 84 -------~k~~vv~tCl~Cg~~kR~p~~~ 105 (123)
T 2k3r_A 84 -------RMPHIVVKCLECGHIMRYPYIK 105 (123)
T ss_dssp -------SSCEEEEEETTTTEEEEEECCC
T ss_pred -------CccEEEEECCCCCCEEEEecCc
Confidence 1358999999999999987543
No 3
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=78.74 E-value=1.1 Score=36.99 Aligned_cols=35 Identities=26% Similarity=0.597 Sum_probs=27.1
Q ss_pred cccCcCCCcccccCCceEEEEEecchhcccccCCCCCCCCCeEEEecCCCCCcccc
Q 023552 86 FFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLK 141 (280)
Q Consensus 86 R~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr~Kk~~~~~~n~VV~tCl~CG~~n~~ 141 (280)
..||..|+.+|+|-- +...+.+++.|..||++..+
T Consensus 24 ~~FCPeCgNmL~pke---------------------d~~~~~l~~~CrtCgY~~~~ 58 (133)
T 3qt1_I 24 FRFCRDCNNMLYPRE---------------------DKENNRLLFECRTCSYVEEA 58 (133)
T ss_dssp CCBCTTTCCBCBCCB---------------------CTTTCCBCCBCSSSCCBCCC
T ss_pred CeeCCCCCCEeeECc---------------------cCCCceeEEECCCCCCcEEc
Confidence 789999999999862 00135688999999997744
No 4
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=78.21 E-value=1.1 Score=35.61 Aligned_cols=36 Identities=19% Similarity=0.536 Sum_probs=27.2
Q ss_pred cccCcCCCcccccCCceEEEEEecchhcccccCCCCCCCCCeEEEecCCCCCccccc
Q 023552 86 FFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLKR 142 (280)
Q Consensus 86 R~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr~Kk~~~~~~n~VV~tCl~CG~~n~~r 142 (280)
..||..|+.+|.|-.. ...+.+++.|..||++....
T Consensus 4 m~FCp~Cgn~L~~~~~---------------------~~~~~~~~~C~~C~y~~~~~ 39 (113)
T 3h0g_I 4 FQYCIECNNMLYPRED---------------------KVDRVLRLACRNCDYSEIAA 39 (113)
T ss_dssp CCCCSSSCCCCEECCC---------------------TTTCCCCEECSSSCCEECCS
T ss_pred ceeCcCCCCEeeEccc---------------------CCCCeeEEECCCCCCeEEcC
Confidence 5799999999998621 01356789999999987653
No 5
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=72.78 E-value=1.9 Score=34.59 Aligned_cols=36 Identities=28% Similarity=0.624 Sum_probs=27.3
Q ss_pred cccCcCCCcccccCCceEEEEEecchhcccccCCCCCCCCCeEEEecCCCCCccccc
Q 023552 86 FFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLKR 142 (280)
Q Consensus 86 R~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr~Kk~~~~~~n~VV~tCl~CG~~n~~r 142 (280)
..||..|+++|.|-. .. ..+.+++.|..||+.....
T Consensus 4 ~~FCp~CgnlL~~~~------~~---------------~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 4 FRFCRDCNNMLYPRE------DK---------------ENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCBCSSSCCBCEEEE------ET---------------TTTEEEEECSSSSCEEECS
T ss_pred CCcccccCccCcccc------cC---------------cCCCCEEECCcCCCeeecC
Confidence 579999999999752 10 1357889999999988654
No 6
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=66.56 E-value=2 Score=30.59 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=11.9
Q ss_pred ccccCcCCCcccccC
Q 023552 85 SFFSCQRCETVLQPG 99 (280)
Q Consensus 85 kR~iCKrC~tiLiPG 99 (280)
...+|.+|++.+-+|
T Consensus 13 ~k~iCpkC~a~~~~g 27 (51)
T 3j21_g 13 KKYVCLRCGATNPWG 27 (51)
T ss_dssp SEEECTTTCCEECTT
T ss_pred CCccCCCCCCcCCCC
Confidence 467999999986665
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=48.06 E-value=1.8 Score=38.23 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHHHHHHHhCCCCCcccccCcCCCcccccCCceEEEEEecchhcccccCCCCCCCCCeEEEecCCCCCccc
Q 023552 61 PSLAALFGHRLASANEVLGLQPDPSFFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNL 140 (280)
Q Consensus 61 PsLSr~Y~r~l~~vseK~~Lpp~~kR~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr~Kk~~~~~~n~VV~tCl~CG~~n~ 140 (280)
+.|-..|-+.-... .-.++-+ +.+..|-.|+.-|-|+.=..|+- +.-+++|-+||.+--
T Consensus 175 ~~lL~~Yerir~~~-~g~avv~-v~~~~C~GC~~~lppq~~~~i~~-------------------~~~Iv~Cp~CgRIL~ 233 (256)
T 3na7_A 175 PKIYSFYERIRRWA-KNTSIVT-IKKQACGGCFIRLNDKIYTEVLT-------------------SGDMITCPYCGRILY 233 (256)
T ss_dssp HHHHHHHHHHHHHH-GGGSEEE-CBTTBCTTTCCBCCHHHHHHHHH-------------------SSSCEECTTTCCEEE
T ss_pred HHHHHHHHHHHHhC-CCceEEE-eeCCccCCCCeeeCHHHHHHHHC-------------------CCCEEECCCCCeeEE
Confidence 46777775544332 2223322 35889999999999997655541 233589999999876
Q ss_pred cc
Q 023552 141 KR 142 (280)
Q Consensus 141 ~r 142 (280)
..
T Consensus 234 ~~ 235 (256)
T 3na7_A 234 AE 235 (256)
T ss_dssp CS
T ss_pred eC
Confidence 44
No 8
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=41.68 E-value=51 Score=30.13 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=12.7
Q ss_pred eEEEecCCCCCcccc
Q 023552 127 TVVYKCHFCSHHNLK 141 (280)
Q Consensus 127 ~VV~tCl~CG~~n~~ 141 (280)
.+-|+|..|||.-+|
T Consensus 294 t~f~~C~~Cg~~w~f 308 (309)
T 1pqv_S 294 TTFCTCEACGNRWKF 308 (309)
T ss_pred cEEEEeCCCCCceec
Confidence 588999999998665
No 9
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=41.60 E-value=27 Score=22.72 Aligned_cols=17 Identities=18% Similarity=0.295 Sum_probs=13.7
Q ss_pred CCeEEEecCCCCCcccc
Q 023552 125 QNTVVYKCHFCSHHNLK 141 (280)
Q Consensus 125 ~n~VV~tCl~CG~~n~~ 141 (280)
.+.+..+|..||+....
T Consensus 17 ~~~~~l~C~aCG~~~~v 33 (36)
T 1k81_A 17 GRVHLLKCMACGAIRPI 33 (36)
T ss_dssp TTEEEEEEETTTEEEEE
T ss_pred CCcEEEEhhcCCCcccc
Confidence 46889999999987653
No 10
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=41.56 E-value=8.9 Score=39.43 Aligned_cols=35 Identities=23% Similarity=0.601 Sum_probs=25.2
Q ss_pred ccCcCCCcccccCCceEEEEEecchhcccccCCCCCCCCCeEEEecCCCCCccccc
Q 023552 87 FSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLKR 142 (280)
Q Consensus 87 ~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr~Kk~~~~~~n~VV~tCl~CG~~n~~r 142 (280)
.-|++|.+||=|=. ++.. +.-.+.|.+|+..|-+.
T Consensus 113 vRC~~CrayiNPf~----~~~~-----------------~g~~W~C~~C~~~N~~P 147 (810)
T 1pcx_A 113 VRCRRCRSYMNPFV----TFIE-----------------QGRRWRCNFCRLANDVP 147 (810)
T ss_dssp CBCTTTCCBCCTTC----EEET-----------------TTTEEECTTTCCEEECC
T ss_pred CccCCccCEecCce----EEeC-----------------CCCEEEccCCCCcCCCc
Confidence 46999999997763 3442 11246999999999764
No 11
>1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal engineering, molecular chaperone, redox-active center, PSI; 1.97A {Bacillus subtilis} SCOP: d.193.1.1 g.81.1.1
Probab=40.10 E-value=11 Score=34.32 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=16.0
Q ss_pred CCeEEEecCCCCCcccccC
Q 023552 125 QNTVVYKCHFCSHHNLKRG 143 (280)
Q Consensus 125 ~n~VV~tCl~CG~~n~~rG 143 (280)
.+.+.++|+|||..+.|.-
T Consensus 261 ~g~iev~C~FC~~~Y~f~~ 279 (291)
T 1vzy_A 261 DGQAEAVCHFCNEKYLFTK 279 (291)
T ss_dssp HSEEEEECTTTCCEEEEEH
T ss_pred CCCEEEEeeCCCCEEEeCH
Confidence 3689999999999988753
No 12
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=40.08 E-value=9.8 Score=39.99 Aligned_cols=35 Identities=23% Similarity=0.601 Sum_probs=25.2
Q ss_pred ccCcCCCcccccCCceEEEEEecchhcccccCCCCCCCCCeEEEecCCCCCccccc
Q 023552 87 FSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLKR 142 (280)
Q Consensus 87 ~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr~Kk~~~~~~n~VV~tCl~CG~~n~~r 142 (280)
.-|++|.+||=|=. ++.. +.-.+.|.+|+..|-+.
T Consensus 229 vRC~rCrAYiNPf~----~~~~-----------------~g~~W~CnfC~~~N~~P 263 (926)
T 1m2v_B 229 VRCRRCRSYMNPFV----TFIE-----------------QGRRWRCNFCRLANDVP 263 (926)
T ss_dssp CBCSSSCCBCCTTC----EEET-----------------TTTEEECTTTCCEEECC
T ss_pred CccCCccCEecCce----EEeC-----------------CCCEEEccCCCCCCCCc
Confidence 46999999997753 4442 11246999999999764
No 13
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=38.45 E-value=10 Score=38.74 Aligned_cols=36 Identities=25% Similarity=0.623 Sum_probs=26.5
Q ss_pred cccCcCCCcccccCCceEEEEEecchhcccccCCCCCCCCCeEEEecCCCCCcccccC
Q 023552 86 FFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLKRG 143 (280)
Q Consensus 86 R~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr~Kk~~~~~~n~VV~tCl~CG~~n~~rG 143 (280)
-.-|++|.+||=|=. ++ +. +. .+.|.+|+..|-+..
T Consensus 85 p~RC~rCrayiNPf~--~f-~~------------------~~-~w~Cn~C~~~N~~P~ 120 (751)
T 3eh1_A 85 IVRCRSCRTYINPFV--SF-ID------------------QR-RWKCNLCYRVNDVPE 120 (751)
T ss_dssp CCBCTTTCCBCCTTC--EE-SS------------------SS-EEECTTTCCEEECCG
T ss_pred CCcccCccCEeCCce--EE-ec------------------CC-EEEcccccCCCCCCH
Confidence 368999999998874 33 33 11 369999999997754
No 14
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=43.47 E-value=7.1 Score=20.69 Aligned_cols=21 Identities=19% Similarity=0.599 Sum_probs=17.1
Q ss_pred EecCCCCCcccccCCCCCccc
Q 023552 130 YKCHFCSHHNLKRGTPVGHMK 150 (280)
Q Consensus 130 ~tCl~CG~~n~~rGt~k~~~k 150 (280)
|.|..||..-........||+
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~ 23 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLANHIR 23 (26)
Confidence 689999998887777777764
No 15
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=36.98 E-value=13 Score=38.10 Aligned_cols=38 Identities=24% Similarity=0.510 Sum_probs=27.3
Q ss_pred ccCcCCCcccccCCceEEEEEecchhcccccCCCCCCCCCeEEEecCCCCCcccccCCC
Q 023552 87 FSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLKRGTP 145 (280)
Q Consensus 87 ~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr~Kk~~~~~~n~VV~tCl~CG~~n~~rGt~ 145 (280)
.-|++|.+||=|=. ++.. +--.+.|.+|+..|-+...-
T Consensus 95 vRC~rCrayiNPf~----~f~~-----------------~g~~w~Cn~C~~~N~~P~~Y 132 (766)
T 3eh2_A 95 LRCNRCKAYMCPFM----QFIE-----------------GGRRFQCCFCSCINDVPPQY 132 (766)
T ss_dssp CBCTTTCCBCCTTC----EEEG-----------------GGTEEECTTTCCEEECCTTT
T ss_pred CccCCCCCEeCCce----EEec-----------------CCCEEEeccccccCCCCHHH
Confidence 57999999997753 3341 11135999999999887664
No 16
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=36.31 E-value=10 Score=38.82 Aligned_cols=37 Identities=24% Similarity=0.529 Sum_probs=26.2
Q ss_pred ccCcCCCcccccCCceEEEEEecchhcccccCCCCCCCCCeEEEecCCCCCcccccCC
Q 023552 87 FSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLKRGT 144 (280)
Q Consensus 87 ~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr~Kk~~~~~~n~VV~tCl~CG~~n~~rGt 144 (280)
.-|++|.+||=|=. ++.. +--.+.|.+|+..|-+...
T Consensus 99 vRC~rCrayiNPf~----~f~~-----------------~g~~w~Cn~C~~~N~~P~~ 135 (770)
T 3efo_B 99 VRCNRCKAYMCPFM----QFIE-----------------GGRRYQCGFCNCVNDVPPF 135 (770)
T ss_dssp CBCTTTCCBSCTTC----EEEG-----------------GGTEEECTTTCCEEECCGG
T ss_pred CccCCCCCCcCCce----EEec-----------------CCCEEEeccccccCCCchH
Confidence 57999999997653 4442 1113599999999987544
No 17
>1vq0_A 33 kDa chaperonin; TM1394, joint center for structural genomics, protein structure initiative, PSI, chaperone; HET: UNL; 2.20A {Thermotoga maritima} SCOP: d.193.1.1 g.81.1.1
Probab=35.83 E-value=15 Score=33.94 Aligned_cols=18 Identities=11% Similarity=0.303 Sum_probs=15.5
Q ss_pred CCeEEEecCCCCCcccccC
Q 023552 125 QNTVVYKCHFCSHHNLKRG 143 (280)
Q Consensus 125 ~n~VV~tCl~CG~~n~~rG 143 (280)
.+ +.++|+|||..+.|.-
T Consensus 269 ~g-iev~C~FC~~~Y~F~~ 286 (302)
T 1vq0_A 269 GK-GEVVCKWCNTRYVFSE 286 (302)
T ss_dssp TC-EEEECTTTCCEEEECH
T ss_pred CC-cEEEeeCCCCEEEeCH
Confidence 46 9999999999998853
No 18
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=35.25 E-value=23 Score=25.00 Aligned_cols=31 Identities=26% Similarity=0.531 Sum_probs=21.6
Q ss_pred cccCcCCCcccccCCceEEEEEecchhcccccCCCCCCCCCeEEEecCCCCCcccc
Q 023552 86 FFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLK 141 (280)
Q Consensus 86 R~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr~Kk~~~~~~n~VV~tCl~CG~~n~~ 141 (280)
+.+|.+|+..+.-. .. .+ .+.|..||.+...
T Consensus 18 ~~fCPkCG~~~~ma-------~~----------------~d--r~~C~kCgyt~~~ 48 (55)
T 2k4x_A 18 HRFCPRCGPGVFLA-------EH----------------AD--RYSCGRCGYTEFK 48 (55)
T ss_dssp SCCCTTTTTTCCCE-------EC----------------SS--EEECTTTCCCEEC
T ss_pred cccCcCCCCceeEe-------cc----------------CC--EEECCCCCCEEEe
Confidence 79999999866321 10 12 5799999999743
No 19
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=34.57 E-value=60 Score=27.85 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHHHHHHhhcCCCChHHHHH----------HHHHHHHHHHhCCCCCcccccCcCCCcccccC
Q 023552 39 KSKLELEHLQRLAVWASSETSVPSLAALF----------GHRLASANEVLGLQPDPSFFSCQRCETVLQPG 99 (280)
Q Consensus 39 ~s~lRiehL~nLA~~A~~ea~~PsLSr~Y----------~r~l~~vseK~~Lpp~~kR~iCKrC~tiLiPG 99 (280)
+.++..+.+..++..|.++ .....++.+ ..++..+...+..-.+....+|..|+-+.. |
T Consensus 115 E~~E~t~my~~~a~~A~eE-gd~~~a~~f~~i~~~E~~H~~~~~~ll~~l~~~~~~~~~~C~~CG~i~~-g 183 (202)
T 1yuz_A 115 EIYETSDMYPAFIRKAQEE-GNSKAVHVFTRAKLAESVHAERYLAAYNDIDAPDDDKFHLCPICGYIHK-G 183 (202)
T ss_dssp HHHHHHTHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCCEEECSSSCCEEE-S
T ss_pred HHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEECCCCCEEc-C
Confidence 3344445566666666542 244444444 244444444443334555899999987654 5
No 20
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=32.56 E-value=17 Score=26.54 Aligned_cols=15 Identities=13% Similarity=0.275 Sum_probs=12.8
Q ss_pred ccccCcCCCcccccC
Q 023552 85 SFFSCQRCETVLQPG 99 (280)
Q Consensus 85 kR~iCKrC~tiLiPG 99 (280)
...||.+|+.-+-|+
T Consensus 18 ~k~ICrkC~ARnp~~ 32 (56)
T 2ayj_A 18 LKKVCRKCGALNPIR 32 (56)
T ss_dssp CCEEETTTCCEECTT
T ss_pred chhhhccccCcCCcc
Confidence 378999999988877
No 21
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=32.44 E-value=32 Score=24.63 Aligned_cols=41 Identities=27% Similarity=0.587 Sum_probs=28.8
Q ss_pred cccCcC--CCcccccCCceEEEEEecchhcccccCCCCCCCCCeEEEecCCCCCcccccCCCCC
Q 023552 86 FFSCQR--CETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLKRGTPVG 147 (280)
Q Consensus 86 R~iCKr--C~tiLiPG~NcrVRI~nnkkK~Kkr~Kk~~~~~~n~VV~tCl~CG~~n~~rGt~k~ 147 (280)
-..|++ |.+||=|=... .. +.-.+.|.+|+..|-+....-+
T Consensus 9 pvRC~r~~CraylNP~~~~----~~-----------------~~~~W~C~~C~~~N~~P~~Y~~ 51 (59)
T 2yrc_A 9 PVLCSRTTCRAVLNPLCQV----DY-----------------RAKLWACNFCYQRNQFPPSYAG 51 (59)
T ss_dssp CCBCSCTTTCCBCCTTSEE----EG-----------------GGTEEECSSSCCEEECCSCCSS
T ss_pred CcccCCCCCCeEECCceEE----EC-----------------CCCEEEcccCCCcCCCCHHHhc
Confidence 356999 99999887543 31 1113589999999987766543
No 22
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=30.73 E-value=41 Score=22.49 Aligned_cols=29 Identities=28% Similarity=0.689 Sum_probs=23.9
Q ss_pred EecCCCCCcccccCCCCCcccccccCCCCCCCCCCCC
Q 023552 130 YKCHFCSHHNLKRGTPVGHMKEICPMKAKPSSRPQCG 166 (280)
Q Consensus 130 ~tCl~CG~~n~~rGt~k~~~k~~~~~~~k~~~~~~~~ 166 (280)
+.|.+||. .||...=||.+.+-..++.|.
T Consensus 11 ~~C~~Cgk--------~GH~ardCP~~~~~~r~~~~~ 39 (40)
T 1a6b_B 11 DQCAYCKE--------KGHWAKDCPKKPRGPRGPRPQ 39 (40)
T ss_dssp SSCSSSCC--------TTCCTTSCSSSCCCTTCCCTT
T ss_pred CeeeECCC--------CCcchhhCcCCcccCCCCCCC
Confidence 58999985 699999999998877777654
No 23
>1i7f_A Heat shock protein 33; HSP33, redox sensitive molecular chaperone, chaperone; 2.70A {Escherichia coli} SCOP: d.193.1.1 PDB: 1xjh_A
Probab=30.61 E-value=11 Score=34.56 Aligned_cols=22 Identities=18% Similarity=0.603 Sum_probs=0.0
Q ss_pred CCeEEEecCCCCCcccccCCCC
Q 023552 125 QNTVVYKCHFCSHHNLKRGTPV 146 (280)
Q Consensus 125 ~n~VV~tCl~CG~~n~~rGt~k 146 (280)
.+.+.++|+|||..+.|.-..-
T Consensus 256 ~g~iev~C~FC~~~Y~F~~~dl 277 (292)
T 1i7f_A 256 DGEIDMHCDYCGNHYLFNAMDI 277 (292)
T ss_dssp ----------------------
T ss_pred CCCEEEEeeCCCCEEEeCHHHH
Confidence 4579999999999999977653
No 24
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=35.87 E-value=11 Score=20.23 Aligned_cols=21 Identities=14% Similarity=0.537 Sum_probs=17.3
Q ss_pred EecCCCCCcccccCCCCCccc
Q 023552 130 YKCHFCSHHNLKRGTPVGHMK 150 (280)
Q Consensus 130 ~tCl~CG~~n~~rGt~k~~~k 150 (280)
|.|..||..-....+...||.
T Consensus 3 ~~C~~C~k~f~~~~~l~~H~~ 23 (29)
T 2lvt_A 3 CQCVMCGKAFTQASSLIAHVR 23 (29)
Confidence 689999998888887777765
No 25
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.62 E-value=14 Score=24.48 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=25.9
Q ss_pred eEEEecC-CCCCcccccCCCCCcccccccCCC
Q 023552 127 TVVYKCH-FCSHHNLKRGTPVGHMKEICPMKA 157 (280)
Q Consensus 127 ~VV~tCl-~CG~~n~~rGt~k~~~k~~~~~~~ 157 (280)
...|.|. .||.....++....||+.-||.++
T Consensus 34 ~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~ 65 (66)
T 2eod_A 34 RLPVACPNQCGVGTVAREDLPGHLKDSCNTAL 65 (66)
T ss_dssp SSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred CcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence 4468999 999999999999999987787654
No 26
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.00 E-value=27 Score=24.22 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=8.3
Q ss_pred cccCcCCCc
Q 023552 86 FFSCQRCET 94 (280)
Q Consensus 86 R~iCKrC~t 94 (280)
+.+|.+|++
T Consensus 19 ~k~CP~CG~ 27 (50)
T 3j20_Y 19 NKFCPRCGP 27 (50)
T ss_dssp SEECSSSCS
T ss_pred cccCCCCCC
Confidence 889999988
No 27
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=28.05 E-value=51 Score=23.46 Aligned_cols=29 Identities=28% Similarity=0.689 Sum_probs=24.1
Q ss_pred EecCCCCCcccccCCCCCcccccccCCCCCCCCCCCC
Q 023552 130 YKCHFCSHHNLKRGTPVGHMKEICPMKAKPSSRPQCG 166 (280)
Q Consensus 130 ~tCl~CG~~n~~rGt~k~~~k~~~~~~~k~~~~~~~~ 166 (280)
..|.+||. .||...=||.+++...++.|.
T Consensus 24 ~~C~~Cge--------~GH~ardCp~~~~~~~~~~~~ 52 (56)
T 1u6p_A 24 DQCAYCKE--------KGHWAKDCPKKPRGPRGPRPQ 52 (56)
T ss_dssp TBCSSSCC--------BSSCGGGCTTCCCSSCSCCCC
T ss_pred CcceeCCC--------CCcccccCcCCccccCCCCcc
Confidence 47999996 799999999998877776554
No 28
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=33.57 E-value=13 Score=19.87 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=17.1
Q ss_pred EecCCCCCcccccCCCCCccc
Q 023552 130 YKCHFCSHHNLKRGTPVGHMK 150 (280)
Q Consensus 130 ~tCl~CG~~n~~rGt~k~~~k 150 (280)
|.|..||..-.......-|+.
T Consensus 4 ~~C~~C~k~f~~~~~l~~H~~ 24 (30)
T 2lvr_A 4 YVCIHCQRQFADPGALQRHVR 24 (30)
Confidence 789999998887777777765
No 29
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=25.68 E-value=80 Score=26.77 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=12.5
Q ss_pred eEEEecCCCCCcccc
Q 023552 127 TVVYKCHFCSHHNLK 141 (280)
Q Consensus 127 ~VV~tCl~CG~~n~~ 141 (280)
.+-|.|..|||.-+|
T Consensus 163 t~f~~C~~C~~~w~f 177 (178)
T 3po3_S 163 TTFCTCEACGNRWKF 177 (178)
T ss_dssp CCCEEETTTCCEECC
T ss_pred cEEEEcCCCCCeecc
Confidence 478999999998765
No 30
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=23.96 E-value=12 Score=21.13 Aligned_cols=22 Identities=18% Similarity=0.546 Sum_probs=18.5
Q ss_pred EecCCCCCcccccCCCCCcccc
Q 023552 130 YKCHFCSHHNLKRGTPVGHMKE 151 (280)
Q Consensus 130 ~tCl~CG~~n~~rGt~k~~~k~ 151 (280)
|.|..||..-......+.||+.
T Consensus 3 ~~C~~C~k~f~~~~~L~~H~~~ 24 (32)
T 2kfq_A 3 FACPACPKRFMRSDALSKHIKT 24 (32)
T ss_dssp SSSSSSCTTHHHHHTTSSSTTS
T ss_pred CCCCCCCcccCCHHHHHHHHHH
Confidence 5799999998888888888764
No 31
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=22.76 E-value=34 Score=28.73 Aligned_cols=13 Identities=31% Similarity=0.761 Sum_probs=11.4
Q ss_pred EEEecCCCCCccc
Q 023552 128 VVYKCHFCSHHNL 140 (280)
Q Consensus 128 VV~tCl~CG~~n~ 140 (280)
.+|.|..||++.-
T Consensus 137 ~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 137 KVYICPICGYTAV 149 (170)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeeEeCCCCCeeC
Confidence 5688999999986
No 32
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=22.18 E-value=29 Score=25.77 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=14.5
Q ss_pred CeEEEecCCCCCccccc
Q 023552 126 NTVVYKCHFCSHHNLKR 142 (280)
Q Consensus 126 n~VV~tCl~CG~~n~~r 142 (280)
+.|+|.|..||...-.+
T Consensus 25 ~~v~Y~C~~CG~~~e~~ 41 (70)
T 1twf_L 25 ATLKYICAECSSKLSLS 41 (70)
T ss_dssp CCCCEECSSSCCEECCC
T ss_pred ceEEEECCCCCCcceeC
Confidence 56899999999997665
No 33
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=21.99 E-value=26 Score=26.45 Aligned_cols=16 Identities=38% Similarity=0.993 Sum_probs=13.4
Q ss_pred eEEEecCCCCCccccc
Q 023552 127 TVVYKCHFCSHHNLKR 142 (280)
Q Consensus 127 ~VV~tCl~CG~~n~~r 142 (280)
+..|+|.+||....+|
T Consensus 24 ~~ky~C~fCgk~~vkR 39 (72)
T 3jyw_9 24 HARYDCSFCGKKTVKR 39 (72)
T ss_dssp HSCBCCSSCCSSCBSB
T ss_pred ccCccCCCCCCceeEe
Confidence 3458999999998887
No 34
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=21.01 E-value=32 Score=35.11 Aligned_cols=38 Identities=26% Similarity=0.636 Sum_probs=26.8
Q ss_pred cccCcC--CCcccccCCceEEEEEecchhcccccCCCCCCCCCeEEEecCCCCCcccccCC
Q 023552 86 FFSCQR--CETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLKRGT 144 (280)
Q Consensus 86 R~iCKr--C~tiLiPG~NcrVRI~nnkkK~Kkr~Kk~~~~~~n~VV~tCl~CG~~n~~rGt 144 (280)
-.-|++ |.+||=|=. ++.. +.-.+.|.+|+..|-+...
T Consensus 62 pvRC~~~~CrayiNPf~----~~~~-----------------~~~~W~C~~C~~~N~~P~~ 101 (769)
T 2nut_A 62 PVLCSRTTCRAVLNPLC----QVDY-----------------RAKLWACNFCYQRNQFPPS 101 (769)
T ss_dssp CCBCSSTTCCCBCCTTS----EEET-----------------TTTEEECSSSCCEEECCGG
T ss_pred CCcCCCCCCCeEECCce----EEeC-----------------CCCEEEccCCCCCCCCChH
Confidence 457999 999997764 3341 1114699999999987643
No 35
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=20.90 E-value=39 Score=23.26 Aligned_cols=14 Identities=43% Similarity=0.866 Sum_probs=11.7
Q ss_pred eEEEecCCCCCccc
Q 023552 127 TVVYKCHFCSHHNL 140 (280)
Q Consensus 127 ~VV~tCl~CG~~n~ 140 (280)
.+.|.|..|||.-+
T Consensus 41 T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 41 TIFYKCTKCGHTWR 54 (57)
T ss_dssp EEEEEESSSCCEEE
T ss_pred cEEEEcCCCCCEec
Confidence 58999999999643
No 36
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=20.17 E-value=97 Score=26.13 Aligned_cols=39 Identities=5% Similarity=0.025 Sum_probs=26.5
Q ss_pred cccCcCCCccc-------------------ccCCceEEEEEecchhcccccCCCCCCCCCeEEEecCCCCCc
Q 023552 86 FFSCQRCETVL-------------------QPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHH 138 (280)
Q Consensus 86 R~iCKrC~tiL-------------------iPG~NcrVRI~nnkkK~Kkr~Kk~~~~~~n~VV~tCl~CG~~ 138 (280)
.-.|..|++.| |++ ++..+... +-...++.|.|..||..
T Consensus 42 ~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~pi~~-~v~~~~D~-------------s~gm~RtEV~C~~Cg~H 99 (144)
T 3e0o_A 42 LYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEE-EVEEKLDT-------------SHGMIRTEVRSRTADSH 99 (144)
T ss_dssp EEEETTTCCEEEETTTBCCCTTSSCEESCCSTT-TEEEEEEC-------------CTTSCEEEEEETTTCCE
T ss_pred EEEeCCCCcccccCcccccCCCCCcccCchhcc-ceEEeecC-------------CCCceEEEEEcCCCCCc
Confidence 78899999988 456 44443331 11245789999999753
No 37
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=20.04 E-value=32 Score=27.69 Aligned_cols=16 Identities=38% Similarity=0.877 Sum_probs=13.3
Q ss_pred eEEEecCCCCCccccc
Q 023552 127 TVVYKCHFCSHHNLKR 142 (280)
Q Consensus 127 ~VV~tCl~CG~~n~~r 142 (280)
+-.|+|.|||....+|
T Consensus 34 ~aky~CpfCgk~~vKR 49 (103)
T 4a17_Y 34 HAKYGCPFCGKVAVKR 49 (103)
T ss_dssp HSCEECTTTCCEEEEE
T ss_pred hcCCCCCCCCCceeee
Confidence 4558999999998777
Done!