Query 023552
Match_columns 280
No_of_seqs 119 out of 149
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 08:47:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023552.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023552hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1twfi1 g.41.3.1 (I:1-49) RBP9 78.8 0.58 4.2E-05 31.7 2.5 35 86-141 4-38 (49)
2 d1pd0a5 g.41.10.1 (A:216-300) 71.4 0.74 5.4E-05 33.2 1.6 36 88-144 15-50 (85)
3 d1vq0a2 g.81.1.1 (A:231-287) H 69.6 0.95 6.9E-05 30.5 1.7 17 126-142 27-43 (57)
4 d1vzya2 g.81.1.1 (A:234-290) H 68.5 1.1 7.8E-05 30.1 1.8 18 125-142 28-45 (57)
5 d1xjha_ g.81.1.1 (A:) HSP33, C 67.1 1.2 8.5E-05 30.3 1.8 18 125-142 33-50 (62)
6 d2qtva5 g.41.10.1 (A:45-119) S 53.3 5.7 0.00041 28.0 3.5 38 88-146 11-50 (75)
7 d2ayja1 g.41.8.7 (A:1-56) Ribo 50.8 2.7 0.0002 29.0 1.3 16 85-100 18-33 (56)
8 d1vzia2 g.41.5.2 (A:1-37) Desu 34.5 7.3 0.00053 24.7 1.3 21 127-147 4-24 (37)
9 d1lkoa2 g.41.5.1 (A:148-191) R 33.1 7.8 0.00057 25.3 1.3 16 126-141 5-20 (44)
10 d1dxga_ g.41.5.2 (A:) Desulfor 32.4 8.3 0.00061 24.4 1.3 15 128-142 5-19 (36)
11 d2ctda2 g.37.1.1 (A:61-90) Zin 32.2 5.5 0.0004 24.1 0.4 11 130-140 3-13 (30)
12 d1dfxa2 g.41.5.2 (A:1-36) Desu 31.6 14 0.00099 23.3 2.3 21 127-147 4-24 (36)
13 d2cu8a2 g.39.1.3 (A:38-70) Cys 31.0 8 0.00059 24.0 1.1 14 89-102 2-15 (33)
14 d1twfi2 g.41.3.1 (I:50-121) RB 27.7 14 0.00099 26.0 2.0 20 127-146 49-68 (72)
15 d1x6ea2 g.37.1.1 (A:41-66) Zin 21.3 17 0.0012 21.1 1.2 11 130-140 3-13 (26)
16 d2co8a1 g.39.1.3 (A:44-76) Ned 21.2 16 0.0011 22.6 1.1 12 89-100 2-13 (33)
17 d1twfl_ g.41.9.2 (L:) RBP12 su 21.1 14 0.001 24.3 0.9 16 127-142 2-17 (46)
18 d1nnqa2 g.41.5.1 (A:135-171) R 20.6 19 0.0013 22.4 1.3 13 128-140 4-16 (37)
No 1
>d1twfi1 g.41.3.1 (I:1-49) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=78.82 E-value=0.58 Score=31.74 Aligned_cols=35 Identities=29% Similarity=0.668 Sum_probs=27.4
Q ss_pred cccCcCCCcccccCCceEEEEEecchhcccccCCCCCCCCCeEEEecCCCCCcccc
Q 023552 86 FFSCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLK 141 (280)
Q Consensus 86 R~iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr~Kk~~~~~~n~VV~tCl~CG~~n~~ 141 (280)
.+||..|+.+|.|- + +...+.+.|.|-+|++.-.-
T Consensus 4 ~rFC~eCnNmLYPK-------E--------------Dk~~~~L~yaCR~C~y~e~A 38 (49)
T d1twfi1 4 FRFCRDCNNMLYPR-------E--------------DKENNRLLFECRTCSYVEEA 38 (49)
T ss_dssp CCBCSSSCCBCEEE-------E--------------ETTTTEEEEECSSSSCEEEC
T ss_pred eecChhcccccccC-------C--------------ccccCEEEEEccCCCceeEc
Confidence 57999999999994 2 11256899999999987543
No 2
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=71.38 E-value=0.74 Score=33.16 Aligned_cols=36 Identities=22% Similarity=0.552 Sum_probs=26.1
Q ss_pred cCcCCCcccccCCceEEEEEecchhcccccCCCCCCCCCeEEEecCCCCCcccccCC
Q 023552 88 SCQRCETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLKRGT 144 (280)
Q Consensus 88 iCKrC~tiLiPG~NcrVRI~nnkkK~Kkr~Kk~~~~~~n~VV~tCl~CG~~n~~rGt 144 (280)
-|++|.+||=|=. ++.. +.-.++|.+|++.|.+...
T Consensus 15 RC~~C~ayiNP~~----~~~~-----------------~g~~w~C~~C~~~N~~p~~ 50 (85)
T d1pd0a5 15 RCRRCRSYMNPFV----TFIE-----------------QGRRWRCNFCRLANDVPMQ 50 (85)
T ss_dssp BCSSSCCBCCTTC----EEET-----------------TTTEEECTTTCCEEECCGG
T ss_pred cccCCcCEECCce----EEeC-----------------CCCEEECCCCCcccCCCHH
Confidence 3999999998874 3441 2233699999999977544
No 3
>d1vq0a2 g.81.1.1 (A:231-287) HSP33, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=69.58 E-value=0.95 Score=30.51 Aligned_cols=17 Identities=12% Similarity=0.350 Sum_probs=14.7
Q ss_pred CeEEEecCCCCCccccc
Q 023552 126 NTVVYKCHFCSHHNLKR 142 (280)
Q Consensus 126 n~VV~tCl~CG~~n~~r 142 (280)
+.+.++|.|||..+.|.
T Consensus 27 g~iev~C~FC~~~Y~f~ 43 (57)
T d1vq0a2 27 GKGEVVCKWCNTRYVFS 43 (57)
T ss_dssp TCEEEECTTTCCEEEEC
T ss_pred CCeEEEeECCCCEEEEC
Confidence 46899999999998875
No 4
>d1vzya2 g.81.1.1 (A:234-290) HSP33, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=68.47 E-value=1.1 Score=30.13 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=15.6
Q ss_pred CCeEEEecCCCCCccccc
Q 023552 125 QNTVVYKCHFCSHHNLKR 142 (280)
Q Consensus 125 ~n~VV~tCl~CG~~n~~r 142 (280)
.+.|.++|.|||..+.|.
T Consensus 28 ~g~iev~C~fC~~~Y~f~ 45 (57)
T d1vzya2 28 DGQAEAVCHFCNEKYLFT 45 (57)
T ss_dssp HSEEEEECTTTCCEEEEE
T ss_pred CCCEEEEeeCCCCEEEEC
Confidence 468999999999998874
No 5
>d1xjha_ g.81.1.1 (A:) HSP33, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=67.10 E-value=1.2 Score=30.34 Aligned_cols=18 Identities=22% Similarity=0.695 Sum_probs=15.4
Q ss_pred CCeEEEecCCCCCccccc
Q 023552 125 QNTVVYKCHFCSHHNLKR 142 (280)
Q Consensus 125 ~n~VV~tCl~CG~~n~~r 142 (280)
.+.|.++|.+||..+.|.
T Consensus 33 ~g~iev~C~fC~~~Y~f~ 50 (62)
T d1xjha_ 33 DGEIDMHCDYCGNHYLFN 50 (62)
T ss_dssp HSEEEEECTTTCCEEEEE
T ss_pred CCCEEEEeeCCCCEEEEC
Confidence 468999999999998774
No 6
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=53.35 E-value=5.7 Score=28.01 Aligned_cols=38 Identities=21% Similarity=0.525 Sum_probs=27.7
Q ss_pred cCcC--CCcccccCCceEEEEEecchhcccccCCCCCCCCCeEEEecCCCCCcccccCCCC
Q 023552 88 SCQR--CETVLQPGFNCTIRIEKNQVKSRRRWKKPKTSMQNTVVYKCHFCSHHNLKRGTPV 146 (280)
Q Consensus 88 iCKr--C~tiLiPG~NcrVRI~nnkkK~Kkr~Kk~~~~~~n~VV~tCl~CG~~n~~rGt~k 146 (280)
.|++ |.+||=|=.+ |.. +.-.++|.+||..|.+...--
T Consensus 11 rC~r~~C~ayiNP~~~----~~~-----------------~~~~W~C~~C~~~N~lP~~Y~ 50 (75)
T d2qtva5 11 VCSGPHCKSILNPYCV----IDP-----------------RNSSWSCPICNSRNHLPPQYT 50 (75)
T ss_dssp BCCSTTTCCBCCTTCC----EET-----------------TTTEEECTTTCCEEECCTTTS
T ss_pred eeCCCCCCcEECCceE----Eec-----------------CCCEEEecccCccCcCChhhc
Confidence 5876 9999988754 441 122469999999998877654
No 7
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=50.83 E-value=2.7 Score=29.02 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=13.3
Q ss_pred ccccCcCCCcccccCC
Q 023552 85 SFFSCQRCETVLQPGF 100 (280)
Q Consensus 85 kR~iCKrC~tiLiPG~ 100 (280)
...||.+|+.-|-|+.
T Consensus 18 ~k~ICrkC~AR~p~rA 33 (56)
T d2ayja1 18 LKKVCRKCGALNPIRA 33 (56)
T ss_dssp CCEEETTTCCEECTTC
T ss_pred hhHHHhhccccCCccc
Confidence 4789999999888774
No 8
>d1vzia2 g.41.5.2 (A:1-37) Desulfoferrodoxin N-terminal domain {Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]}
Probab=34.45 E-value=7.3 Score=24.75 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=14.2
Q ss_pred eEEEecCCCCCcccccCCCCC
Q 023552 127 TVVYKCHFCSHHNLKRGTPVG 147 (280)
Q Consensus 127 ~VV~tCl~CG~~n~~rGt~k~ 147 (280)
.=||+|..||++--.-....|
T Consensus 4 ~evYkC~~CGNiVeV~~~g~G 24 (37)
T d1vzia2 4 LQVYKCEVCGNIVEVLNGGIG 24 (37)
T ss_dssp TCEEECTTTCCEEEEEECCSS
T ss_pred ccEEEecccCcEEEEEECCCc
Confidence 458999999997654433333
No 9
>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=33.15 E-value=7.8 Score=25.25 Aligned_cols=16 Identities=13% Similarity=0.426 Sum_probs=13.4
Q ss_pred CeEEEecCCCCCcccc
Q 023552 126 NTVVYKCHFCSHHNLK 141 (280)
Q Consensus 126 n~VV~tCl~CG~~n~~ 141 (280)
..+.+.|..||++.--
T Consensus 5 ~~~~W~C~~CGyi~~g 20 (44)
T d1lkoa2 5 QATKWRCRNCGYVHEG 20 (44)
T ss_dssp EEEEEEETTTCCEEEE
T ss_pred CCeEEEcCCCCcEEEC
Confidence 4688999999999853
No 10
>d1dxga_ g.41.5.2 (A:) Desulforedoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=32.42 E-value=8.3 Score=24.35 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=11.7
Q ss_pred EEEecCCCCCccccc
Q 023552 128 VVYKCHFCSHHNLKR 142 (280)
Q Consensus 128 VV~tCl~CG~~n~~r 142 (280)
-||+|..||++--.-
T Consensus 5 evYkC~~CGNiVeV~ 19 (36)
T d1dxga_ 5 DVYKCELCGQVVKVL 19 (36)
T ss_dssp CEEECTTTCCEEEEE
T ss_pred cEEEeccCCcEEEEE
Confidence 479999999875443
No 11
>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.23 E-value=5.5 Score=24.14 Aligned_cols=11 Identities=27% Similarity=0.942 Sum_probs=8.8
Q ss_pred EecCCCCCccc
Q 023552 130 YKCHFCSHHNL 140 (280)
Q Consensus 130 ~tCl~CG~~n~ 140 (280)
++|+.||.+-.
T Consensus 3 ftc~hcgkqlk 13 (30)
T d2ctda2 3 FTCHHCGKQLR 13 (30)
T ss_dssp CCCSSSCCCCS
T ss_pred eechhHHHHHh
Confidence 58999998743
No 12
>d1dfxa2 g.41.5.2 (A:1-36) Desulfoferrodoxin N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=31.60 E-value=14 Score=23.31 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=15.0
Q ss_pred eEEEecCCCCCcccccCCCCC
Q 023552 127 TVVYKCHFCSHHNLKRGTPVG 147 (280)
Q Consensus 127 ~VV~tCl~CG~~n~~rGt~k~ 147 (280)
.=||+|..||++--.-....|
T Consensus 4 ~evYkC~~CGNiVeV~~~g~G 24 (36)
T d1dfxa2 4 LEVYKCTHCGNIVEVLHGGGA 24 (36)
T ss_dssp TCEEECTTTCCEEECSSCCSS
T ss_pred ccEEEecccCcEEEEEECCCc
Confidence 458999999998665444444
No 13
>d2cu8a2 g.39.1.3 (A:38-70) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.04 E-value=8 Score=23.99 Aligned_cols=14 Identities=43% Similarity=1.056 Sum_probs=12.3
Q ss_pred CcCCCcccccCCce
Q 023552 89 CQRCETVLQPGFNC 102 (280)
Q Consensus 89 CKrC~tiLiPG~Nc 102 (280)
|.+|...|.||--+
T Consensus 2 CekC~ktL~~G~Ha 15 (33)
T d2cu8a2 2 CERCSKTLTPGGHA 15 (33)
T ss_dssp CSSSCCBCCTTSCE
T ss_pred chhcccccCCCCcc
Confidence 99999999999654
No 14
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.71 E-value=14 Score=26.00 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=16.1
Q ss_pred eEEEecCCCCCcccccCCCC
Q 023552 127 TVVYKCHFCSHHNLKRGTPV 146 (280)
Q Consensus 127 ~VV~tCl~CG~~n~~rGt~k 146 (280)
.+.|.|..|||.-+..+..|
T Consensus 49 T~Fy~C~~C~h~Wr~~~~~~ 68 (72)
T d1twfi2 49 VLFFVCLSCSHIFTSDQKNK 68 (72)
T ss_dssp CEEEEETTTCCEEECCTTCC
T ss_pred eEEEEcCCCCCCcccccccc
Confidence 59999999999887755544
No 15
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.31 E-value=17 Score=21.06 Aligned_cols=11 Identities=36% Similarity=0.703 Sum_probs=8.8
Q ss_pred EecCCCCCccc
Q 023552 130 YKCHFCSHHNL 140 (280)
Q Consensus 130 ~tCl~CG~~n~ 140 (280)
|.|.+||..-.
T Consensus 3 y~C~eCgK~F~ 13 (26)
T d1x6ea2 3 YKCLECGKAFS 13 (26)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCcCeec
Confidence 79999997643
No 16
>d2co8a1 g.39.1.3 (A:44-76) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.24 E-value=16 Score=22.55 Aligned_cols=12 Identities=50% Similarity=1.068 Sum_probs=10.9
Q ss_pred CcCCCcccccCC
Q 023552 89 CQRCETVLQPGF 100 (280)
Q Consensus 89 CKrC~tiLiPG~ 100 (280)
|..|+.-|.||-
T Consensus 2 C~~CeatL~pG~ 13 (33)
T d2co8a1 2 CHTCEATLWPGG 13 (33)
T ss_dssp CSSSCCBCCTTS
T ss_pred ceeeeeEEccCc
Confidence 999999999994
No 17
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.13 E-value=14 Score=24.33 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=11.5
Q ss_pred eEEEecCCCCCccccc
Q 023552 127 TVVYKCHFCSHHNLKR 142 (280)
Q Consensus 127 ~VV~tCl~CG~~n~~r 142 (280)
.|.|.|.+||..+...
T Consensus 2 ~v~YiCgeCg~~~~l~ 17 (46)
T d1twfl_ 2 TLKYICAECSSKLSLS 17 (46)
T ss_dssp CCCEECSSSCCEECCC
T ss_pred ceEEEcccCCCceEeC
Confidence 4678888888876543
No 18
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=20.57 E-value=19 Score=22.42 Aligned_cols=13 Identities=31% Similarity=0.761 Sum_probs=11.3
Q ss_pred EEEecCCCCCccc
Q 023552 128 VVYKCHFCSHHNL 140 (280)
Q Consensus 128 VV~tCl~CG~~n~ 140 (280)
.+|.|..||++..
T Consensus 4 ~~~~C~vCG~i~~ 16 (37)
T d1nnqa2 4 KVYICPICGYTAV 16 (37)
T ss_dssp CEEECTTTCCEEE
T ss_pred cEEECCCCCCEec
Confidence 4789999999976
Done!