Query 023556
Match_columns 280
No_of_seqs 155 out of 1799
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:56:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 100.0 5.6E-30 1.2E-34 228.7 20.6 192 81-279 1-338 (339)
2 KOG1197 Predicted quinone oxid 99.9 8.2E-26 1.8E-30 190.9 15.7 196 80-280 5-332 (336)
3 COG1062 AdhC Zn-dependent alco 99.9 1.9E-25 4.2E-30 196.5 14.4 187 83-276 2-364 (366)
4 COG0604 Qor NADPH:quinone redu 99.9 1.7E-24 3.6E-29 196.1 20.1 191 84-278 1-326 (326)
5 KOG0023 Alcohol dehydrogenase, 99.9 1.9E-24 4E-29 188.5 16.5 196 78-279 4-355 (360)
6 KOG0022 Alcohol dehydrogenase, 99.9 1.5E-22 3.2E-27 176.0 14.5 192 80-277 4-374 (375)
7 PRK09880 L-idonate 5-dehydroge 99.9 6.2E-22 1.3E-26 180.7 17.7 128 151-278 199-343 (343)
8 KOG0024 Sorbitol dehydrogenase 99.9 1.1E-21 2.5E-26 171.5 17.0 194 82-279 3-353 (354)
9 cd08291 ETR_like_1 2-enoyl thi 99.9 6.4E-21 1.4E-25 172.4 19.7 189 84-277 1-324 (324)
10 cd08281 liver_ADH_like1 Zinc-d 99.9 4.5E-21 9.8E-26 176.8 17.5 126 151-276 221-371 (371)
11 TIGR03451 mycoS_dep_FDH mycoth 99.9 8.7E-21 1.9E-25 174.1 19.3 126 151-277 206-357 (358)
12 cd08239 THR_DH_like L-threonin 99.9 1.5E-20 3.4E-25 170.8 18.7 188 84-278 1-339 (339)
13 KOG1198 Zinc-binding oxidoredu 99.9 1.3E-20 2.8E-25 171.5 17.9 193 84-279 5-346 (347)
14 TIGR02822 adh_fam_2 zinc-bindi 99.8 1.2E-19 2.7E-24 164.7 20.5 180 87-276 2-328 (329)
15 TIGR01202 bchC 2-desacetyl-2-h 99.8 6.2E-20 1.4E-24 165.2 17.6 187 83-277 1-308 (308)
16 PLN02586 probable cinnamyl alc 99.8 8.5E-20 1.8E-24 167.8 18.1 123 153-278 214-353 (360)
17 cd08294 leukotriene_B4_DH_like 99.8 3.1E-19 6.6E-24 161.1 19.8 188 83-278 2-329 (329)
18 PLN02178 cinnamyl-alcohol dehy 99.8 3.2E-19 6.9E-24 164.9 20.1 123 153-278 209-348 (375)
19 cd08295 double_bond_reductase_ 99.8 3.2E-19 7E-24 162.2 19.8 190 84-278 8-338 (338)
20 PLN02740 Alcohol dehydrogenase 99.8 2.9E-19 6.2E-24 165.4 19.6 127 151-278 228-381 (381)
21 COG2130 Putative NADP-dependen 99.8 1.2E-19 2.7E-24 157.4 15.0 127 151-279 180-339 (340)
22 PRK10309 galactitol-1-phosphat 99.8 9.1E-19 2E-23 159.8 18.8 128 151-278 190-346 (347)
23 PLN02514 cinnamyl-alcohol dehy 99.8 1.9E-18 4.1E-23 158.7 20.8 125 152-279 210-351 (357)
24 PRK10754 quinone oxidoreductas 99.8 2.2E-18 4.8E-23 155.6 20.7 192 83-277 1-326 (327)
25 PLN03154 putative allyl alcoho 99.8 3E-18 6.5E-23 156.9 21.5 194 81-279 6-346 (348)
26 cd08300 alcohol_DH_class_III c 99.8 9.4E-19 2E-23 161.2 17.5 126 151-277 216-368 (368)
27 TIGR02825 B4_12hDH leukotriene 99.8 2.5E-18 5.4E-23 155.5 19.8 177 93-277 14-325 (325)
28 cd08292 ETR_like_2 2-enoyl thi 99.8 3.8E-18 8.2E-23 153.6 20.3 190 84-277 1-324 (324)
29 PLN02827 Alcohol dehydrogenase 99.8 1.3E-18 2.7E-23 161.1 17.6 125 153-278 225-376 (378)
30 TIGR02819 fdhA_non_GSH formald 99.8 1.7E-18 3.7E-23 160.9 18.4 123 154-278 218-390 (393)
31 TIGR02818 adh_III_F_hyde S-(hy 99.8 2.1E-18 4.5E-23 159.0 17.6 127 151-278 215-368 (368)
32 cd08230 glucose_DH Glucose deh 99.8 2.1E-18 4.6E-23 158.0 16.7 119 155-278 208-355 (355)
33 cd08233 butanediol_DH_like (2R 99.8 4.4E-18 9.6E-23 155.5 18.0 126 151-276 202-350 (351)
34 cd08301 alcohol_DH_plants Plan 99.8 2.2E-18 4.9E-23 158.7 16.0 125 151-276 217-368 (369)
35 TIGR03201 dearomat_had 6-hydro 99.8 3.4E-18 7.4E-23 156.4 16.7 127 151-278 195-349 (349)
36 cd08296 CAD_like Cinnamyl alco 99.8 1.1E-17 2.4E-22 151.9 19.7 186 84-277 1-333 (333)
37 cd08250 Mgc45594_like Mgc45594 99.8 2.2E-17 4.7E-22 149.2 20.4 193 83-277 1-329 (329)
38 cd08293 PTGR2 Prostaglandin re 99.8 1.6E-17 3.5E-22 151.2 19.6 181 95-278 20-345 (345)
39 cd08237 ribitol-5-phosphate_DH 99.8 1.2E-17 2.6E-22 152.4 17.4 183 84-279 3-340 (341)
40 PRK10083 putative oxidoreducta 99.8 4.2E-17 9E-22 148.1 18.8 190 84-279 1-338 (339)
41 cd08277 liver_alcohol_DH_like 99.8 4E-17 8.7E-22 150.2 18.4 126 151-277 214-365 (365)
42 cd08238 sorbose_phosphate_red 99.8 3.2E-17 6.9E-22 153.3 17.9 95 183-278 256-368 (410)
43 COG1063 Tdh Threonine dehydrog 99.8 2.5E-17 5.4E-22 150.9 16.1 190 84-278 1-350 (350)
44 cd08285 NADP_ADH NADP(H)-depen 99.7 1E-16 2.2E-21 146.5 18.9 128 151-278 196-351 (351)
45 PTZ00354 alcohol dehydrogenase 99.7 3.6E-16 7.7E-21 141.1 21.4 193 83-279 1-329 (334)
46 cd08244 MDR_enoyl_red Possible 99.7 4.5E-16 9.7E-21 140.0 21.6 192 84-278 1-324 (324)
47 KOG0025 Zn2+-binding dehydroge 99.7 8.1E-17 1.7E-21 138.8 15.7 196 79-278 15-352 (354)
48 cd08290 ETR 2-enoyl thioester 99.7 3.2E-16 7E-21 142.3 20.5 192 84-278 1-341 (341)
49 TIGR01751 crot-CoA-red crotony 99.7 3.3E-16 7.2E-21 145.8 20.2 127 151-279 219-388 (398)
50 cd05284 arabinose_DH_like D-ar 99.7 2.7E-16 5.9E-21 142.7 19.0 124 151-278 197-340 (340)
51 cd08240 6_hydroxyhexanoate_dh_ 99.7 4.4E-16 9.5E-21 142.2 19.2 125 151-277 205-349 (350)
52 cd08274 MDR9 Medium chain dehy 99.7 7.5E-16 1.6E-20 140.3 20.4 122 155-278 210-350 (350)
53 cd05280 MDR_yhdh_yhfp Yhdh and 99.7 5.8E-16 1.3E-20 139.3 19.2 190 84-278 1-325 (325)
54 cd08297 CAD3 Cinnamyl alcohol 99.7 6.8E-16 1.5E-20 140.3 19.8 125 151-278 195-341 (341)
55 cd05283 CAD1 Cinnamyl alcohol 99.7 6.7E-16 1.5E-20 140.4 19.3 124 151-277 198-337 (337)
56 TIGR02817 adh_fam_1 zinc-bindi 99.7 8.9E-16 1.9E-20 139.0 19.7 189 85-277 1-334 (336)
57 PRK05396 tdh L-threonine 3-deh 99.7 4E-16 8.6E-21 141.9 17.0 126 151-279 193-341 (341)
58 cd08246 crotonyl_coA_red croto 99.7 1E-15 2.2E-20 142.2 19.5 125 151-277 223-392 (393)
59 cd08276 MDR7 Medium chain dehy 99.7 2.5E-15 5.5E-20 135.5 21.5 191 84-278 1-336 (336)
60 cd08270 MDR4 Medium chain dehy 99.7 3.6E-15 7.8E-20 133.0 21.7 182 84-278 1-305 (305)
61 cd08231 MDR_TM0436_like Hypoth 99.7 1.1E-15 2.4E-20 140.2 18.7 127 151-278 207-361 (361)
62 cd08289 MDR_yhfp_like Yhfp put 99.7 9.4E-16 2E-20 138.2 17.8 191 84-278 1-326 (326)
63 TIGR02823 oxido_YhdH putative 99.7 2.6E-15 5.7E-20 135.2 20.3 189 85-278 1-323 (323)
64 PRK13771 putative alcohol dehy 99.7 8.3E-16 1.8E-20 139.2 17.1 185 84-278 1-333 (334)
65 cd08254 hydroxyacyl_CoA_DH 6-h 99.7 3.8E-15 8.1E-20 134.7 20.6 190 84-278 1-338 (338)
66 cd08243 quinone_oxidoreductase 99.7 2.3E-15 5E-20 134.7 19.1 187 84-276 1-319 (320)
67 cd08256 Zn_ADH2 Alcohol dehydr 99.7 7E-16 1.5E-20 140.9 15.8 126 151-276 204-350 (350)
68 cd08262 Zn_ADH8 Alcohol dehydr 99.7 2.2E-15 4.7E-20 137.0 18.8 127 151-277 191-341 (341)
69 cd08242 MDR_like Medium chain 99.7 1.5E-15 3.3E-20 136.7 17.2 187 84-278 1-319 (319)
70 cd08249 enoyl_reductase_like e 99.7 1.6E-15 3.5E-20 138.1 17.2 188 84-278 1-339 (339)
71 cd08248 RTN4I1 Human Reticulon 99.7 3.3E-15 7.1E-20 136.1 18.5 191 84-277 1-350 (350)
72 cd05278 FDH_like Formaldehyde 99.7 3.4E-15 7.4E-20 135.8 18.2 124 154-277 200-346 (347)
73 cd08286 FDH_like_ADH2 formalde 99.7 3E-15 6.6E-20 136.3 17.8 125 154-278 199-345 (345)
74 cd08259 Zn_ADH5 Alcohol dehydr 99.7 4.5E-15 9.8E-20 133.7 18.7 123 151-277 192-332 (332)
75 cd05282 ETR_like 2-enoyl thioe 99.7 5.7E-15 1.2E-19 132.7 19.3 184 90-277 4-323 (323)
76 cd08272 MDR6 Medium chain dehy 99.7 1.1E-14 2.4E-19 130.4 20.9 190 84-278 1-326 (326)
77 cd08260 Zn_ADH6 Alcohol dehydr 99.7 4.4E-15 9.5E-20 135.2 18.3 127 151-277 194-344 (345)
78 cd08253 zeta_crystallin Zeta-c 99.7 7E-15 1.5E-19 131.3 19.2 191 84-278 1-325 (325)
79 PRK09422 ethanol-active dehydr 99.7 7.1E-15 1.5E-19 133.3 19.5 125 151-278 192-336 (338)
80 cd08266 Zn_ADH_like1 Alcohol d 99.7 1.1E-14 2.4E-19 131.2 20.5 191 84-278 1-342 (342)
81 cd05276 p53_inducible_oxidored 99.7 7.4E-15 1.6E-19 130.9 17.8 189 84-276 1-323 (323)
82 cd08288 MDR_yhdh Yhdh putative 99.6 2.2E-14 4.9E-19 129.1 20.6 190 84-278 1-324 (324)
83 cd08252 AL_MDR Arginate lyase 99.6 2.6E-14 5.7E-19 129.3 20.7 190 84-277 1-336 (336)
84 cd08278 benzyl_alcohol_DH Benz 99.6 4.9E-15 1.1E-19 136.4 16.1 125 151-277 216-365 (365)
85 cd08283 FDH_like_1 Glutathione 99.6 1E-14 2.3E-19 135.2 18.0 127 151-277 214-385 (386)
86 cd05289 MDR_like_2 alcohol deh 99.6 4.1E-14 9E-19 125.6 21.2 189 84-276 1-309 (309)
87 cd08235 iditol_2_DH_like L-idi 99.6 1.2E-14 2.6E-19 132.1 18.0 125 152-277 196-343 (343)
88 cd08263 Zn_ADH10 Alcohol dehyd 99.6 1.3E-14 2.9E-19 133.4 18.2 126 152-277 218-367 (367)
89 cd08234 threonine_DH_like L-th 99.6 2.6E-14 5.6E-19 129.3 19.8 185 84-276 1-333 (334)
90 cd08261 Zn_ADH7 Alcohol dehydr 99.6 1.6E-14 3.6E-19 131.0 18.5 126 151-278 188-337 (337)
91 cd08271 MDR5 Medium chain dehy 99.6 5.1E-14 1.1E-18 126.3 20.7 190 84-278 1-325 (325)
92 cd08273 MDR8 Medium chain dehy 99.6 3.6E-14 7.8E-19 128.0 19.7 187 85-276 2-330 (331)
93 cd05281 TDH Threonine dehydrog 99.6 1.4E-14 3E-19 131.9 17.0 125 153-278 195-341 (341)
94 cd08287 FDH_like_ADH3 formalde 99.6 1E-14 2.2E-19 132.7 16.1 123 154-277 201-344 (345)
95 cd08298 CAD2 Cinnamyl alcohol 99.6 4E-14 8.7E-19 127.9 19.7 119 151-276 196-329 (329)
96 cd05286 QOR2 Quinone oxidoredu 99.6 5.9E-14 1.3E-18 124.9 19.8 188 85-278 1-320 (320)
97 cd08279 Zn_ADH_class_III Class 99.6 4.2E-14 9E-19 130.0 17.9 125 151-275 212-362 (363)
98 cd08284 FDH_like_2 Glutathione 99.6 4.5E-14 9.7E-19 128.4 17.8 122 154-277 200-343 (344)
99 cd08269 Zn_ADH9 Alcohol dehydr 99.6 9E-14 2E-18 124.3 18.1 180 96-276 5-311 (312)
100 cd08275 MDR3 Medium chain dehy 99.6 2.8E-13 6E-18 122.1 20.8 190 85-278 1-337 (337)
101 cd08236 sugar_DH NAD(P)-depend 99.6 1.2E-13 2.5E-18 125.7 18.1 123 151-276 189-343 (343)
102 TIGR02824 quinone_pig3 putativ 99.6 3.6E-13 7.8E-18 120.3 20.6 191 84-278 1-325 (325)
103 cd05288 PGDH Prostaglandin deh 99.6 2E-13 4.4E-18 123.1 19.0 124 151-276 175-329 (329)
104 cd08268 MDR2 Medium chain dehy 99.6 2.5E-13 5.4E-18 121.5 19.0 191 84-278 1-328 (328)
105 cd08282 PFDH_like Pseudomonas 99.6 1.8E-13 3.9E-18 126.5 18.2 122 154-277 209-374 (375)
106 cd08241 QOR1 Quinone oxidoredu 99.6 4.7E-13 1E-17 119.4 20.4 189 84-277 1-323 (323)
107 cd05279 Zn_ADH1 Liver alcohol 99.6 1.2E-13 2.5E-18 127.2 16.6 123 153-276 215-364 (365)
108 cd08245 CAD Cinnamyl alcohol d 99.6 4E-13 8.7E-18 121.4 19.8 123 151-276 191-330 (330)
109 TIGR00692 tdh L-threonine 3-de 99.6 1.1E-13 2.4E-18 125.9 16.1 124 154-278 194-340 (340)
110 cd08232 idonate-5-DH L-idonate 99.6 2.2E-13 4.7E-18 123.7 17.9 128 151-278 195-339 (339)
111 cd08299 alcohol_DH_class_I_II_ 99.6 2E-13 4.4E-18 126.1 17.6 127 151-278 220-373 (373)
112 PLN02702 L-idonate 5-dehydroge 99.6 4.8E-13 1E-17 123.0 19.7 126 152-277 212-363 (364)
113 PF13602 ADH_zinc_N_2: Zinc-bi 99.6 4E-15 8.6E-20 116.4 4.9 108 165-276 1-127 (127)
114 cd05285 sorbitol_DH Sorbitol d 99.5 3.8E-13 8.3E-18 122.5 16.9 126 151-276 192-341 (343)
115 cd08267 MDR1 Medium chain dehy 99.5 1.7E-12 3.8E-17 116.0 18.9 185 89-276 3-319 (319)
116 cd08247 AST1_like AST1 is a cy 99.5 1.5E-12 3.3E-17 118.9 18.6 123 154-278 185-352 (352)
117 cd08264 Zn_ADH_like2 Alcohol d 99.5 8.6E-13 1.9E-17 119.0 16.6 112 159-274 196-324 (325)
118 cd08251 polyketide_synthase po 99.5 8.4E-13 1.8E-17 116.9 15.7 168 106-276 2-303 (303)
119 cd08265 Zn_ADH3 Alcohol dehydr 99.5 1.8E-12 4E-17 120.1 17.9 124 152-276 234-383 (384)
120 KOG1196 Predicted NAD-dependen 99.4 1.4E-11 3E-16 107.3 13.6 127 151-279 183-341 (343)
121 KOG1202 Animal-type fatty acid 99.3 7.2E-12 1.6E-16 124.2 11.9 183 93-280 1424-1743(2376)
122 cd05195 enoyl_red enoyl reduct 99.3 2.7E-11 5.8E-16 106.1 14.1 124 151-276 138-293 (293)
123 cd08258 Zn_ADH4 Alcohol dehydr 99.3 1.2E-10 2.6E-15 104.6 15.7 50 84-135 1-50 (306)
124 smart00829 PKS_ER Enoylreducta 99.2 6.3E-10 1.4E-14 97.4 13.6 124 151-276 134-288 (288)
125 PF00107 ADH_zinc_N: Zinc-bind 98.9 3.4E-09 7.3E-14 82.9 7.6 69 147-215 14-92 (130)
126 cd05188 MDR Medium chain reduc 98.6 1.1E-06 2.3E-11 76.4 12.7 66 151-216 163-236 (271)
127 cd08255 2-desacetyl-2-hydroxye 98.5 1.7E-06 3.6E-11 76.2 11.1 122 151-276 127-277 (277)
128 TIGR03366 HpnZ_proposed putati 98.4 5.5E-07 1.2E-11 79.9 7.7 108 151-258 150-280 (280)
129 PF08240 ADH_N: Alcohol dehydr 98.2 1.8E-06 4E-11 65.6 5.0 39 111-150 1-39 (109)
130 cd00401 AdoHcyase S-adenosyl-L 97.6 0.00022 4.7E-09 66.7 8.6 122 151-278 230-376 (413)
131 PRK09424 pntA NAD(P) transhydr 96.4 0.01 2.3E-07 57.0 7.3 97 151-247 193-336 (509)
132 PRK11873 arsM arsenite S-adeno 93.1 0.47 1E-05 41.7 7.9 124 151-275 107-258 (272)
133 COG2242 CobL Precorrin-6B meth 91.4 2.1 4.4E-05 35.7 9.1 111 108-243 31-153 (187)
134 TIGR00561 pntA NAD(P) transhyd 89.3 0.92 2E-05 43.8 6.2 65 151-215 192-287 (511)
135 PF13823 ADH_N_assoc: Alcohol 87.7 0.53 1.2E-05 25.2 2.0 22 84-109 1-22 (23)
136 COG0144 Sun tRNA and rRNA cyto 82.3 17 0.00037 33.5 10.6 98 108-215 153-291 (355)
137 PRK08306 dipicolinate synthase 81.8 4.2 9.1E-05 36.4 6.3 65 151-218 180-247 (296)
138 PLN02494 adenosylhomocysteinas 80.7 2.7 5.9E-05 40.1 4.8 34 182-215 307-344 (477)
139 smart00846 Gp_dh_N Glyceraldeh 78.1 4.9 0.00011 32.2 4.9 48 183-230 86-136 (149)
140 COG2910 Putative NADH-flavin r 71.9 7.2 0.00016 32.6 4.4 67 146-215 23-107 (211)
141 PRK00377 cbiT cobalt-precorrin 69.7 29 0.00063 28.7 7.9 81 151-244 70-164 (198)
142 KOG4300 Predicted methyltransf 69.1 15 0.00033 31.3 5.8 73 141-213 93-183 (252)
143 PRK05476 S-adenosyl-L-homocyst 67.8 9.7 0.00021 36.0 5.0 34 182-215 265-302 (425)
144 PF08241 Methyltransf_11: Meth 66.0 7.8 0.00017 27.1 3.2 60 151-210 24-95 (95)
145 COG2226 UbiE Methylase involve 63.7 14 0.00029 32.2 4.8 65 151-216 80-160 (238)
146 PF00044 Gp_dh_N: Glyceraldehy 63.5 6.6 0.00014 31.5 2.6 42 183-224 87-132 (151)
147 PTZ00434 cytosolic glyceraldeh 62.3 15 0.00032 34.0 4.9 33 183-215 103-138 (361)
148 TIGR01532 E4PD_g-proteo D-eryt 61.3 18 0.00039 32.9 5.3 33 183-215 88-123 (325)
149 TIGR00936 ahcY adenosylhomocys 60.9 18 0.00038 34.1 5.3 35 181-215 247-285 (406)
150 TIGR02469 CbiT precorrin-6Y C5 60.5 41 0.0009 24.7 6.6 62 151-212 48-122 (124)
151 COG2518 Pcm Protein-L-isoaspar 58.9 23 0.00049 30.1 5.1 53 161-213 113-170 (209)
152 PRK07729 glyceraldehyde-3-phos 58.8 19 0.00041 33.1 5.0 33 183-215 88-123 (343)
153 PLN03096 glyceraldehyde-3-phos 57.2 22 0.00047 33.3 5.2 34 183-216 149-185 (395)
154 COG0081 RplA Ribosomal protein 54.8 11 0.00023 32.5 2.5 92 141-246 64-165 (228)
155 PF12847 Methyltransf_18: Meth 54.1 41 0.00088 24.4 5.5 64 147-210 25-109 (112)
156 TIGR00518 alaDH alanine dehydr 53.6 30 0.00066 32.0 5.6 65 151-215 195-270 (370)
157 PRK10258 biotin biosynthesis p 53.1 1E+02 0.0023 26.3 8.7 64 151-214 69-142 (251)
158 COG2084 MmsB 3-hydroxyisobutyr 51.2 77 0.0017 28.3 7.5 64 147-215 23-98 (286)
159 TIGR00406 prmA ribosomal prote 50.8 80 0.0017 28.0 7.7 49 183-245 224-278 (288)
160 PLN02232 ubiquinone biosynthes 50.5 55 0.0012 26.1 6.1 32 183-214 43-83 (160)
161 PF01209 Ubie_methyltran: ubiE 49.9 28 0.00061 30.0 4.5 65 151-215 77-156 (233)
162 PRK00517 prmA ribosomal protei 49.5 1.3E+02 0.0028 26.0 8.6 48 184-244 179-232 (250)
163 PRK14967 putative methyltransf 49.4 1.6E+02 0.0034 24.8 9.7 51 196-259 143-193 (223)
164 PRK13944 protein-L-isoaspartat 48.4 93 0.002 25.9 7.4 62 151-212 102-173 (205)
165 PRK15425 gapA glyceraldehyde-3 48.1 38 0.00082 31.0 5.1 33 184-216 89-124 (331)
166 PRK08955 glyceraldehyde-3-phos 47.8 31 0.00066 31.6 4.5 33 183-215 87-122 (334)
167 PRK00107 gidB 16S rRNA methylt 47.8 60 0.0013 26.9 6.0 61 151-212 74-145 (187)
168 COG0673 MviM Predicted dehydro 47.8 2E+02 0.0043 25.6 9.9 109 151-275 35-149 (342)
169 PRK13942 protein-L-isoaspartat 47.3 1E+02 0.0022 25.9 7.4 31 183-213 144-177 (212)
170 TIGR00080 pimt protein-L-isoas 47.0 86 0.0019 26.3 7.0 31 183-213 145-178 (215)
171 PRK11088 rrmA 23S rRNA methylt 46.9 91 0.002 27.2 7.4 64 151-214 117-183 (272)
172 PLN02358 glyceraldehyde-3-phos 46.5 41 0.0009 30.8 5.2 33 183-215 94-129 (338)
173 PRK13943 protein-L-isoaspartat 46.0 79 0.0017 28.7 6.9 60 151-211 110-179 (322)
174 PTZ00023 glyceraldehyde-3-phos 45.9 49 0.0011 30.3 5.5 33 183-215 89-124 (337)
175 COG2519 GCD14 tRNA(1-methylade 45.7 80 0.0017 27.7 6.5 75 154-241 127-211 (256)
176 COG2082 CobH Precorrin isomera 44.9 71 0.0015 27.1 5.9 52 206-270 129-180 (210)
177 PRK13535 erythrose 4-phosphate 44.8 72 0.0016 29.2 6.4 33 183-215 90-125 (336)
178 TIGR01534 GAPDH-I glyceraldehy 44.7 29 0.00062 31.7 3.8 32 184-215 90-124 (327)
179 COG0686 Ald Alanine dehydrogen 44.4 46 0.00099 30.3 4.9 65 151-215 196-271 (371)
180 PRK07403 glyceraldehyde-3-phos 44.0 51 0.0011 30.2 5.3 32 184-215 90-124 (337)
181 PRK11933 yebU rRNA (cytosine-C 42.6 96 0.0021 29.8 7.2 97 108-214 110-244 (470)
182 TIGR00446 nop2p NOL1/NOP2/sun 41.3 85 0.0018 27.4 6.2 64 151-214 101-201 (264)
183 TIGR02853 spore_dpaA dipicolin 41.2 48 0.001 29.5 4.7 38 181-218 206-246 (287)
184 COG4122 Predicted O-methyltran 41.2 50 0.0011 28.3 4.6 85 120-213 67-167 (219)
185 KOG1540 Ubiquinone biosynthesi 39.1 81 0.0018 27.9 5.5 33 183-215 176-217 (296)
186 PTZ00075 Adenosylhomocysteinas 39.0 44 0.00095 32.1 4.3 34 182-215 307-344 (476)
187 PRK10206 putative oxidoreducta 38.8 1.6E+02 0.0034 26.9 7.8 61 146-211 26-93 (344)
188 PRK14901 16S rRNA methyltransf 38.4 1.3E+02 0.0028 28.4 7.4 63 151-213 282-385 (434)
189 CHL00129 rpl1 ribosomal protei 37.6 94 0.002 26.8 5.7 114 113-246 40-163 (229)
190 PF03446 NAD_binding_2: NAD bi 37.2 1.1E+02 0.0025 24.3 6.0 64 147-215 24-97 (163)
191 PRK11705 cyclopropane fatty ac 36.6 53 0.0012 30.5 4.4 62 151-212 195-267 (383)
192 TIGR03840 TMPT_Se_Te thiopurin 36.0 45 0.00098 28.2 3.5 32 183-214 112-154 (213)
193 TIGR02752 MenG_heptapren 2-hep 35.5 1.4E+02 0.0029 25.1 6.5 63 151-213 75-152 (231)
194 PLN02233 ubiquinone biosynthes 35.4 1.5E+02 0.0033 25.7 6.9 32 183-214 144-184 (261)
195 PLN02237 glyceraldehyde-3-phos 35.0 82 0.0018 30.0 5.3 32 183-214 164-198 (442)
196 PRK08286 cbiC cobalt-precorrin 34.8 83 0.0018 26.9 4.9 52 204-268 131-182 (214)
197 PRK08287 cobalt-precorrin-6Y C 34.0 1.3E+02 0.0028 24.4 6.0 78 151-243 60-149 (187)
198 PLN02781 Probable caffeoyl-CoA 33.9 79 0.0017 27.1 4.8 61 151-211 98-177 (234)
199 KOG1122 tRNA and rRNA cytosine 33.6 2.4E+02 0.0053 26.8 8.0 95 108-215 238-374 (460)
200 COG0057 GapA Glyceraldehyde-3- 33.4 55 0.0012 29.8 3.8 34 184-217 89-126 (335)
201 PRK05424 rplA 50S ribosomal pr 32.6 1.3E+02 0.0028 25.9 5.9 112 114-245 41-162 (230)
202 PLN02490 MPBQ/MSBQ methyltrans 32.4 73 0.0016 29.2 4.5 63 151-213 142-216 (340)
203 PRK08285 cobH precorrin-8X met 32.2 1E+02 0.0022 26.2 5.0 40 228-267 137-176 (208)
204 COG2227 UbiG 2-polyprenyl-3-me 31.8 73 0.0016 27.7 4.1 61 151-213 86-162 (243)
205 PRK08317 hypothetical protein; 31.7 1.5E+02 0.0032 24.5 6.1 63 151-213 49-125 (241)
206 PRK04266 fibrillarin; Provisio 31.4 1.6E+02 0.0034 25.2 6.2 61 183-247 140-207 (226)
207 PRK11579 putative oxidoreducta 31.3 3.9E+02 0.0085 24.1 9.9 61 146-211 28-93 (346)
208 PF05724 TPMT: Thiopurine S-me 31.3 38 0.00083 28.8 2.3 29 183-211 115-154 (218)
209 PRK10792 bifunctional 5,10-met 31.2 84 0.0018 28.1 4.5 55 160-215 177-234 (285)
210 PRK14175 bifunctional 5,10-met 31.0 81 0.0018 28.2 4.4 54 160-215 176-233 (286)
211 COG4091 Predicted homoserine d 30.7 2.3E+02 0.005 26.4 7.2 95 109-213 13-134 (438)
212 PRK14178 bifunctional 5,10-met 30.0 78 0.0017 28.2 4.1 54 161-215 171-227 (279)
213 TIGR00138 gidB 16S rRNA methyl 29.9 1.2E+02 0.0026 24.8 5.0 60 151-211 71-141 (181)
214 TIGR01934 MenG_MenH_UbiE ubiqu 29.6 1.7E+02 0.0036 24.0 6.1 32 183-214 105-145 (223)
215 CHL00194 ycf39 Ycf39; Provisio 29.6 1.2E+02 0.0026 26.9 5.4 68 147-214 24-111 (317)
216 PLN02244 tocopherol O-methyltr 29.3 1.2E+02 0.0027 27.5 5.5 31 183-213 185-224 (340)
217 TIGR00563 rsmB ribosomal RNA s 29.2 2.1E+02 0.0045 26.9 7.1 20 196-215 352-371 (426)
218 COG0027 PurT Formate-dependent 29.0 2.2E+02 0.0048 26.1 6.7 110 168-277 56-195 (394)
219 PRK00312 pcm protein-L-isoaspa 28.8 2.8E+02 0.006 22.9 7.3 31 183-213 143-176 (212)
220 PRK14904 16S rRNA methyltransf 28.7 2.5E+02 0.0054 26.6 7.6 64 151-215 280-380 (445)
221 PRK01683 trans-aconitate 2-met 28.7 2.2E+02 0.0047 24.4 6.7 61 151-212 60-130 (258)
222 PRK07502 cyclohexadienyl dehyd 28.3 1.2E+02 0.0025 27.0 5.1 60 151-213 36-101 (307)
223 PF13847 Methyltransf_31: Meth 28.3 1.8E+02 0.004 22.5 5.7 62 151-212 33-110 (152)
224 PF13241 NAD_binding_7: Putati 27.7 1.2E+02 0.0026 22.2 4.2 40 178-217 54-96 (103)
225 PLN02476 O-methyltransferase 27.5 94 0.002 27.6 4.2 61 151-211 148-227 (278)
226 TIGR01169 rplA_bact ribosomal 27.5 1.5E+02 0.0032 25.5 5.3 91 141-245 62-161 (227)
227 PRK14903 16S rRNA methyltransf 26.7 2.5E+02 0.0053 26.6 7.1 65 151-215 267-369 (431)
228 PF02527 GidB: rRNA small subu 26.6 2.3E+02 0.005 23.4 6.2 82 151-244 77-169 (184)
229 PRK14103 trans-aconitate 2-met 26.6 1.8E+02 0.0039 25.0 5.8 59 151-211 58-125 (255)
230 PRK05954 precorrin-8X methylmu 26.3 1.6E+02 0.0035 24.9 5.1 59 195-268 113-171 (203)
231 PF05401 NodS: Nodulation prot 26.1 50 0.0011 27.8 2.1 61 151-212 70-146 (201)
232 PLN02272 glyceraldehyde-3-phos 25.9 1.4E+02 0.003 28.3 5.2 31 184-214 174-207 (421)
233 TIGR03215 ac_ald_DH_ac acetald 25.7 1.1E+02 0.0024 27.3 4.3 51 159-213 41-96 (285)
234 PRK14189 bifunctional 5,10-met 25.5 1.1E+02 0.0023 27.4 4.2 55 160-215 176-233 (285)
235 PRK14902 16S rRNA methyltransf 25.5 2.3E+02 0.0051 26.7 6.8 18 195-212 362-379 (444)
236 PRK08300 acetaldehyde dehydrog 25.2 92 0.002 28.1 3.7 54 158-215 43-104 (302)
237 PRK13304 L-aspartate dehydroge 24.9 4E+02 0.0087 23.2 7.8 60 147-211 26-91 (265)
238 PRK08289 glyceraldehyde-3-phos 24.7 1.4E+02 0.0031 28.6 5.1 32 184-215 224-261 (477)
239 PRK11036 putative S-adenosyl-L 24.5 1.2E+02 0.0026 26.2 4.3 66 147-212 66-149 (255)
240 PRK05575 cbiC precorrin-8X met 24.0 1.8E+02 0.004 24.6 5.1 51 205-268 126-176 (204)
241 PF08704 GCD14: tRNA methyltra 23.9 95 0.0021 27.1 3.5 33 183-215 112-149 (247)
242 PRK13256 thiopurine S-methyltr 23.9 90 0.002 26.8 3.3 32 183-214 123-165 (226)
243 PF02882 THF_DHG_CYH_C: Tetrah 23.5 91 0.002 25.2 3.1 56 160-216 54-112 (160)
244 PRK14192 bifunctional 5,10-met 23.4 1.1E+02 0.0025 27.1 4.0 56 160-215 177-234 (283)
245 PRK00216 ubiE ubiquinone/menaq 23.1 3.1E+02 0.0067 22.7 6.6 32 183-214 120-160 (239)
246 PRK13302 putative L-aspartate 23.0 4E+02 0.0086 23.4 7.3 62 146-211 30-97 (271)
247 PF01135 PCMT: Protein-L-isoas 22.8 67 0.0015 27.2 2.3 31 183-213 140-173 (209)
248 PF13460 NAD_binding_10: NADH( 22.8 2.4E+02 0.0053 22.3 5.6 66 147-215 22-100 (183)
249 KOG1663 O-methyltransferase [S 22.7 1.3E+02 0.0028 26.1 4.0 53 160-212 116-183 (237)
250 PF02353 CMAS: Mycolic acid cy 21.9 95 0.0021 27.4 3.2 61 151-211 90-165 (273)
251 cd05213 NAD_bind_Glutamyl_tRNA 21.8 1.5E+02 0.0032 26.6 4.4 40 151-193 207-247 (311)
252 PRK00299 sulfur transfer prote 21.6 1.9E+02 0.0042 20.2 4.2 32 184-215 7-46 (81)
253 PRK14188 bifunctional 5,10-met 21.4 1.4E+02 0.003 26.9 4.1 54 160-215 176-233 (296)
254 TIGR00477 tehB tellurite resis 21.2 3.5E+02 0.0076 22.2 6.4 30 183-212 93-133 (195)
255 PF03447 NAD_binding_3: Homose 21.1 80 0.0017 23.5 2.2 28 184-211 59-89 (117)
256 PRK14177 bifunctional 5,10-met 20.6 1.4E+02 0.0031 26.6 4.0 55 160-215 177-234 (284)
257 COG1052 LdhA Lactate dehydroge 20.5 4.6E+02 0.01 23.8 7.4 110 123-245 118-257 (324)
258 COG0623 FabI Enoyl-[acyl-carri 20.5 3.1E+02 0.0066 24.0 5.7 21 196-216 128-148 (259)
259 PTZ00353 glycosomal glyceralde 20.5 96 0.0021 28.5 2.9 23 184-206 92-117 (342)
260 COG0075 Serine-pyruvate aminot 20.4 6.1E+02 0.013 23.7 8.2 27 188-214 60-89 (383)
261 PLN02589 caffeoyl-CoA O-methyl 20.4 1.5E+02 0.0032 25.8 4.0 82 120-210 87-188 (247)
262 cd05212 NAD_bind_m-THF_DH_Cycl 20.3 1.5E+02 0.0033 23.3 3.7 56 160-215 46-103 (140)
263 PLN02928 oxidoreductase family 20.3 3.5E+02 0.0076 24.7 6.6 51 182-244 224-282 (347)
264 PF02570 CbiC: Precorrin-8X me 20.1 95 0.0021 26.1 2.6 54 204-270 118-171 (198)
265 PRK05953 precorrin-8X methylmu 20.0 2.1E+02 0.0046 24.3 4.7 49 208-269 122-170 (208)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=99.97 E-value=5.6e-30 Score=228.70 Aligned_cols=192 Identities=30% Similarity=0.446 Sum_probs=168.7
Q ss_pred ccceeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE----------
Q 023556 81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV---------- 150 (280)
Q Consensus 81 p~~mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~---------- 150 (280)
|.+|||+++.+++++ +++. +++.|+|++|||+|+|+|||||++|+|.++|.++ ...+|.++|||+
T Consensus 1 ~~~mkA~~~~~~~~p--l~i~-e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~--~~~~P~ipGHEivG~V~~vG~~ 75 (339)
T COG1064 1 MMTMKAAVLKKFGQP--LEIE-EVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWP--VPKLPLIPGHEIVGTVVEVGEG 75 (339)
T ss_pred CcceEEEEEccCCCC--ceEE-eccCCCCCCCeEEEEEEEEeecchhhhhhcCCCC--CCCCCccCCcceEEEEEEecCC
Confidence 457999999999988 8889 9999999999999999999999999999999997 456999999999
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 76 V~~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~ 155 (339)
T COG1064 76 VTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITT 155 (339)
T ss_pred CccCCCCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeE
Confidence
Q ss_pred ---------------------------------------EEecChhhHHHHHhCCCCEEEeCCCCCccccC-CCccEEEe
Q 023556 151 ---------------------------------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDLP-EKFDVVYD 190 (280)
Q Consensus 151 ---------------------------------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~-~g~DvV~d 190 (280)
+.+.+++|++++++||+|++++.+++++.+.. +.+|+++|
T Consensus 156 y~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 156 YRALKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred eeehhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEE
Confidence 78899999999999999999998877666654 34999999
Q ss_pred CCC--CHHHHHhccccCCEEEEEcCCC-CC-Cce------------EEEEeecHHHHHHHHHHHHCCCceeecCCCcccc
Q 023556 191 AIG--QCDRAVKAIKEGGTVVALTGAV-TP-PGF------------RFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFP 254 (280)
Q Consensus 191 ~~g--~~~~~l~~l~~gG~vV~~g~~~-~~-~~~------------~~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~ 254 (280)
+++ .++.++++|+++|+++.+|... .+ ..+ .-++...+.++++++++.++|++++.+.. .++
T Consensus 236 tv~~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~f~~~g~Ikp~i~e--~~~ 313 (339)
T COG1064 236 TVGPATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFAAEGKIKPEILE--TIP 313 (339)
T ss_pred CCChhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHHHHHhCCceeeEEe--eEC
Confidence 998 7899999999999999999884 22 111 12344468999999999999999999843 899
Q ss_pred hhhHHHHHHHHHhCCCCeeEEEEeC
Q 023556 255 FSQVVEAFSYIETNKATGKVVIHPI 279 (280)
Q Consensus 255 l~~v~~A~~~l~~~~~~gkvVv~~~ 279 (280)
++|+++|++.|++++..|++||++.
T Consensus 314 l~~in~A~~~m~~g~v~gR~Vi~~~ 338 (339)
T COG1064 314 LDEINEAYERMEKGKVRGRAVIDMS 338 (339)
T ss_pred HHHHHHHHHHHHcCCeeeEEEecCC
Confidence 9999999999999999999999764
No 2
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.94 E-value=8.2e-26 Score=190.93 Aligned_cols=196 Identities=33% Similarity=0.538 Sum_probs=169.1
Q ss_pred cccceeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE---------
Q 023556 80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV--------- 150 (280)
Q Consensus 80 ~p~~mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~--------- 150 (280)
.|...|.+++++.|+.++++++ +.|+|+|.+||++||..|+|+|..|.+.++|.|. +.++|++||.|.
T Consensus 5 ~p~~~k~i~v~e~Ggydvlk~e-d~pv~~papgel~iknka~GlNfid~y~RkGlY~--~~plPytpGmEaaGvVvAvG~ 81 (336)
T KOG1197|consen 5 SPPLLKCIVVTEFGGYDVLKLE-DRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYD--PAPLPYTPGMEAAGVVVAVGE 81 (336)
T ss_pred CCchheEEEEeccCCcceEEEe-eecCCCCCCCceEEeehhcCccHHHHHHhccccC--CCCCCcCCCcccceEEEEecC
Confidence 4566789999999999999999 9999999999999999999999999999999994 468999999999
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 82 gvtdrkvGDrVayl~~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGl 161 (336)
T KOG1197|consen 82 GVTDRKVGDRVAYLNPFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGL 161 (336)
T ss_pred CccccccccEEEEeccchhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHH
Confidence
Q ss_pred --------------EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCEE
Q 023556 151 --------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTV 208 (280)
Q Consensus 151 --------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~v 208 (280)
+++++.+|++.+++.|+++.|+|+.+|+.++ ++|+|+++|.+| ++...+.+|++.|++
T Consensus 162 ll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKGVd~vyDsvG~dt~~~sl~~Lk~~G~m 241 (336)
T KOG1197|consen 162 LLCQLLRAVGAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKGVDAVYDSVGKDTFAKSLAALKPMGKM 241 (336)
T ss_pred HHHHHHHhcCcEEEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCCceeeeccccchhhHHHHHHhccCceE
Confidence 6778899999999999999999999998765 379999999999 799999999999999
Q ss_pred EEEcCCCC---CCceEEE-------Eee-------cH----HHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHh
Q 023556 209 VALTGAVT---PPGFRFV-------VTS-------NG----EVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIET 267 (280)
Q Consensus 209 V~~g~~~~---~~~~~~~-------~~~-------~~----~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~ 267 (280)
|.+|.... +..+.+. +++ .. ....+++.++.+|.+++.+.. +|||+++.+|...+++
T Consensus 242 VSfG~asgl~~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~I~~--~ypls~vadA~~dies 319 (336)
T KOG1197|consen 242 VSFGNASGLIDPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLKIHIDH--VYPLSKVADAHADIES 319 (336)
T ss_pred EEeccccCCCCCeehhhcChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhcCccceeeee--ecchHHHHHHHHHHHh
Confidence 99998762 2222110 000 11 345677888899999999985 9999999999999999
Q ss_pred CCCCeeEEEEeCC
Q 023556 268 NKATGKVVIHPIP 280 (280)
Q Consensus 268 ~~~~gkvVv~~~~ 280 (280)
.+..||+++.+.|
T Consensus 320 rktvGkvlLlp~~ 332 (336)
T KOG1197|consen 320 RKTVGKVLLLPGP 332 (336)
T ss_pred hhccceEEEeCCc
Confidence 9999999998754
No 3
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=99.93 E-value=1.9e-25 Score=196.55 Aligned_cols=187 Identities=21% Similarity=0.291 Sum_probs=159.6
Q ss_pred ceeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE------------
Q 023556 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------ 150 (280)
Q Consensus 83 ~mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------ 150 (280)
++||++..+.+.| |+++ ++.+.+|++|||+||+.|+|+||+|++.++|..| ..+|.++|||+
T Consensus 2 k~~aAV~~~~~~P--l~i~-ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p---~~~P~vLGHEgAGiVe~VG~gVt 75 (366)
T COG1062 2 KTRAAVAREAGKP--LEIE-EVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDP---EGFPAVLGHEGAGIVEAVGEGVT 75 (366)
T ss_pred CceEeeeecCCCC--eEEE-EEecCCCCCCeEEEEEEEeeccccchhhhcCCCC---CCCceecccccccEEEEecCCcc
Confidence 4789999999988 9999 9999999999999999999999999999999997 34999999999
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 76 ~vkpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~ 155 (366)
T COG1062 76 SVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKID 155 (366)
T ss_pred ccCCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECC
Confidence
Q ss_pred -----------------------------------------------------------EEecChhhHHHHHhCCCCEEE
Q 023556 151 -----------------------------------------------------------AATSSTRNLEFLKSLGADLAI 171 (280)
Q Consensus 151 -----------------------------------------------------------~~~~s~~~~~~l~~lga~~vi 171 (280)
+++.+++|++++++||++++|
T Consensus 156 ~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~v 235 (366)
T COG1062 156 PDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFV 235 (366)
T ss_pred CCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceee
Confidence 788999999999999999999
Q ss_pred eCCCC-CccccC-----CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCceE-----EEEe-----------e
Q 023556 172 DYTKD-NFEDLP-----EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGFR-----FVVT-----------S 226 (280)
Q Consensus 172 d~~~~-~~~~~~-----~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~~-----~~~~-----------~ 226 (280)
|..+. +..+.+ +|+|++|||+| .++.+++++.++|+.+.+|.......+. +... .
T Consensus 236 n~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~gr~~~Gs~~G~~~ 315 (366)
T COG1062 236 NPKEVDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGAR 315 (366)
T ss_pred cchhhhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeeccceEEEEeecCCc
Confidence 99876 344432 59999999999 5899999999999999999877332221 1110 1
Q ss_pred cHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 023556 227 NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 276 (280)
Q Consensus 227 ~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv 276 (280)
-+.++.++++|+.+|+++.....|+.++|+|++|||+.|.+|+.. |-||
T Consensus 316 p~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~I-R~Vi 364 (366)
T COG1062 316 PRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSI-RSVI 364 (366)
T ss_pred cccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCcee-eEEe
Confidence 247899999999999999888777899999999999999999875 4444
No 4
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=99.93 E-value=1.7e-24 Score=196.14 Aligned_cols=191 Identities=37% Similarity=0.594 Sum_probs=158.8
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
|||+++.+.++++.++++ +.|.|.|++|||||||+|+|||+.|++.++|..+ ....+|.++|.|+
T Consensus 1 mka~~~~~~g~~~~l~~~-e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~-~~~~~P~i~G~d~aG~V~avG~~V~~ 78 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVV-EVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAP-PVRPLPFIPGSEAAGVVVAVGSGVTG 78 (326)
T ss_pred CeEEEEeccCCCceeEEE-ecCCCCCCCCeEEEEEEEeecChHHHHhccCCCC-CCCCCCCcccceeEEEEEEeCCCCCC
Confidence 799999999998779999 9999999999999999999999999999999732 2346899999999
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 ~~~GdrV~~~~~~~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~ 158 (326)
T COG0604 79 FKVGDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSA 158 (326)
T ss_pred cCCCCEEEEccCCCCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHH
Confidence
Q ss_pred -------------EEecChhhHHHHHhCCCCEEEeCCCCCccccC------CCccEEEeCCC--CHHHHHhccccCCEEE
Q 023556 151 -------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDLP------EKFDVVYDAIG--QCDRAVKAIKEGGTVV 209 (280)
Q Consensus 151 -------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~------~g~DvV~d~~g--~~~~~l~~l~~gG~vV 209 (280)
+++++++|.++++++|+|++|+|++++|.+.+ +++|+|||++| .+..++++|+++|+++
T Consensus 159 aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG~~~~~~~l~~l~~~G~lv 238 (326)
T COG0604 159 AIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLV 238 (326)
T ss_pred HHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCCHHHHHHHHHHhccCCEEE
Confidence 67788888899999999999999999987753 47999999999 6889999999999999
Q ss_pred EEcCCCC-CC-ceE-------------EEEe-----ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhC-
Q 023556 210 ALTGAVT-PP-GFR-------------FVVT-----SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETN- 268 (280)
Q Consensus 210 ~~g~~~~-~~-~~~-------------~~~~-----~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~- 268 (280)
.+|.... .. .+. .... ...+.++++.+++++|.+++.+.. +|+|+|...+...+..+
T Consensus 239 ~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~--~~~l~e~~~a~a~~~~~~ 316 (326)
T COG0604 239 SIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLKPVIDR--VYPLAEAPAAAAHLLLER 316 (326)
T ss_pred EEecCCCCCccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHHHHHcCCCcceecc--EechhhhHHHHHHHHccc
Confidence 9998762 11 000 1111 125788899999999999999985 99999965555555444
Q ss_pred CCCeeEEEEe
Q 023556 269 KATGKVVIHP 278 (280)
Q Consensus 269 ~~~gkvVv~~ 278 (280)
+..||+||++
T Consensus 317 ~~~GKvvl~~ 326 (326)
T COG0604 317 RTTGKVVLKV 326 (326)
T ss_pred CCcceEEEeC
Confidence 7889999974
No 5
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=1.9e-24 Score=188.49 Aligned_cols=196 Identities=21% Similarity=0.295 Sum_probs=165.0
Q ss_pred CCcccceeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------
Q 023556 78 GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------- 150 (280)
Q Consensus 78 ~~~p~~mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------- 150 (280)
..+|.+.++|.+..+++....++. +.++|+++++||+|+|.|||||++|+|.+.|.|+ ...+|.++|||+
T Consensus 4 ~~~p~k~~g~~~~~~~G~l~p~~~-~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg--~s~~PlV~GHEiaG~Vvkv 80 (360)
T KOG0023|consen 4 MSIPEKQFGWAARDPSGVLSPEVF-SFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWG--LSKYPLVPGHEIAGVVVKV 80 (360)
T ss_pred ccCchhhEEEEEECCCCCCCccee-EcCCCCCCCCcEEEEEEEEeccchhHHHhhccCC--cccCCccCCceeeEEEEEE
Confidence 367889999999998886667778 9999999999999999999999999999999997 488999999999
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 81 Gs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~a 160 (360)
T KOG0023|consen 81 GSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASA 160 (360)
T ss_pred CCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhc
Confidence
Q ss_pred -------------------------------------------------EEecCh-hhHHHHHhCCCCEEEeCC-CCCcc
Q 023556 151 -------------------------------------------------AATSST-RNLEFLKSLGADLAIDYT-KDNFE 179 (280)
Q Consensus 151 -------------------------------------------------~~~~s~-~~~~~l~~lga~~vid~~-~~~~~ 179 (280)
+.+.++ .|.+.+++||||.+++.. ++++.
T Consensus 161 APlLCaGITvYspLk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~ 240 (360)
T KOG0023|consen 161 APLLCAGITVYSPLKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIM 240 (360)
T ss_pred cchhhcceEEeehhHHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHH
Confidence 455555 444566779999999988 67776
Q ss_pred ccC-CCccEEEeCCC-----CHHHHHhccccCCEEEEEcCCCCCCceEE------------EEeecHHHHHHHHHHHHCC
Q 023556 180 DLP-EKFDVVYDAIG-----QCDRAVKAIKEGGTVVALTGAVTPPGFRF------------VVTSNGEVLKKLNPYLESG 241 (280)
Q Consensus 180 ~~~-~g~DvV~d~~g-----~~~~~l~~l~~gG~vV~~g~~~~~~~~~~------------~~~~~~~~l~~l~~ll~~G 241 (280)
+.. +-.|.++|++. .++.++++||++|++|.+|....+..+.. +....+.+.+++++++.+|
T Consensus 241 ~~~~~~~dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~ 320 (360)
T KOG0023|consen 241 KAIMKTTDGGIDTVSNLAEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDFVARG 320 (360)
T ss_pred HHHHHhhcCcceeeeeccccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHHHHcC
Confidence 654 55677777654 58999999999999999999885433321 2233678999999999999
Q ss_pred CceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 023556 242 KVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI 279 (280)
Q Consensus 242 ~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~~ 279 (280)
.+++.+. ..+++++++|++.|++++..++.||++.
T Consensus 321 ~ik~~IE---~v~~~~v~~a~erm~kgdV~yRfVvD~s 355 (360)
T KOG0023|consen 321 LIKSPIE---LVKLSEVNEAYERMEKGDVRYRFVVDVS 355 (360)
T ss_pred CCcCceE---EEehhHHHHHHHHHHhcCeeEEEEEEcc
Confidence 9999887 7999999999999999999999999874
No 6
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=1.5e-22 Score=176.04 Aligned_cols=192 Identities=20% Similarity=0.230 Sum_probs=162.9
Q ss_pred cccceeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE---------
Q 023556 80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV--------- 150 (280)
Q Consensus 80 ~p~~mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~--------- 150 (280)
.+.+|||+++++++.| |.++ ++.+++|+.+||+||+.|+|+|++|.+.++|..+ ...+|.++|||+
T Consensus 4 kvI~CKAAV~w~a~~P--L~IE-ei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~--~~~fP~IlGHEaaGIVESvGe 78 (375)
T KOG0022|consen 4 KVITCKAAVAWEAGKP--LVIE-EIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDP--EGLFPVILGHEAAGIVESVGE 78 (375)
T ss_pred CceEEeEeeeccCCCC--eeEE-EEEeCCCCCceEEEEEEEEeeccccceeecCCCc--cccCceEecccceeEEEEecC
Confidence 4678999999999998 8888 9999999999999999999999999999999875 567899999999
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 gV~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v 158 (375)
T KOG0022|consen 79 GVTTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISV 158 (375)
T ss_pred CccccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeeccee
Confidence
Q ss_pred ---------------------------------------------------------------EEecChhhHHHHHhCCC
Q 023556 151 ---------------------------------------------------------------AATSSTRNLEFLKSLGA 167 (280)
Q Consensus 151 ---------------------------------------------------------------~~~~s~~~~~~l~~lga 167 (280)
.++.+++|.+.++++|+
T Consensus 159 ~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGa 238 (375)
T KOG0022|consen 159 AKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGA 238 (375)
T ss_pred EecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCc
Confidence 78899999999999999
Q ss_pred CEEEeCCCCC--cccc-----CCCccEEEeCCC---CHHHHHhccccC-CEEEEEcCCCCCCceEE--------------
Q 023556 168 DLAIDYTKDN--FEDL-----PEKFDVVYDAIG---QCDRAVKAIKEG-GTVVALTGAVTPPGFRF-------------- 222 (280)
Q Consensus 168 ~~vid~~~~~--~~~~-----~~g~DvV~d~~g---~~~~~l~~l~~g-G~vV~~g~~~~~~~~~~-------------- 222 (280)
+++||..+-. ..+. .+|+|+-|||+| .+.+++.+.+.| |+-|.+|.......+.+
T Consensus 239 Te~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs 318 (375)
T KOG0022|consen 239 TEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGS 318 (375)
T ss_pred ceecChhhccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEE
Confidence 9999988421 2221 279999999999 478999999999 99999998774432221
Q ss_pred --EEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 223 --VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 223 --~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
-....++++..+.+.+.++.++.....||.++|+++++||+.|.+|+.. +.||.
T Consensus 319 ~FGG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~Gksi-R~vl~ 374 (375)
T KOG0022|consen 319 AFGGFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSI-RCVLW 374 (375)
T ss_pred ecccccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceE-EEEEe
Confidence 1123568899999999999998888788999999999999999999875 66654
No 7
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.89 E-value=6.2e-22 Score=180.66 Aligned_cols=128 Identities=21% Similarity=0.395 Sum_probs=100.3
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCccccC---CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCceE---
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLP---EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGFR--- 221 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~---~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~~--- 221 (280)
+++.+++++++++++|+++++|++++++.+.. +++|+||||+| .++.++++|+++|+++.+|.......++
T Consensus 199 ~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~ 278 (343)
T PRK09880 199 CADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGAPPEFPMMT 278 (343)
T ss_pred EEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHH
Confidence 45678899999999999999999876654422 46999999999 3789999999999999998754322111
Q ss_pred -------EE-EeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 222 -------FV-VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 222 -------~~-~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
+. .....+.++++++++++|++++....+++|+|+|+.+|++.+++++..||+||.+
T Consensus 279 ~~~k~~~i~g~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~ 343 (343)
T PRK09880 279 LIVKEISLKGSFRFTEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF 343 (343)
T ss_pred HHhCCcEEEEEeeccccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence 10 1123467899999999999987544446899999999999999988789999863
No 8
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=1.1e-21 Score=171.46 Aligned_cols=194 Identities=21% Similarity=0.240 Sum_probs=156.0
Q ss_pred cceeEEEEcccCCCccEEEeeeccCCCC-CCCcEEEEEEEEecChHHHHHHcCCCC-CCCCCCCcccCceE---------
Q 023556 82 SEMKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPLPTVPGYDV--------- 150 (280)
Q Consensus 82 ~~mka~~~~~~g~~~~l~l~~~~~~p~~-~~~eVlVkV~aagl~~~D~~~~~g~~~-~~~~~~P~i~G~e~--------- 150 (280)
.+|+|+++...++ +++. +.|.|++ .|+||+|++.++|||++|+|++..... ....+.|+++|||.
T Consensus 3 ~~~~A~vl~g~~d---i~i~-~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~ 78 (354)
T KOG0024|consen 3 ADNLALVLRGKGD---IRIE-QRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGD 78 (354)
T ss_pred cccceeEEEccCc---eeEe-eCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhcc
Confidence 4589999988765 7888 9999987 999999999999999999998875443 22346899999999
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 ~Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~ePLsV~ 158 (354)
T KOG0024|consen 79 EVKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIEPLSVG 158 (354)
T ss_pred cccccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhcccccchhhh
Confidence
Q ss_pred ----------------------------------------EEecChhhHHHHHhCCCCEEEeCCCCC-cc---cc---C-
Q 023556 151 ----------------------------------------AATSSTRNLEFLKSLGADLAIDYTKDN-FE---DL---P- 182 (280)
Q Consensus 151 ----------------------------------------~~~~s~~~~~~l~~lga~~vid~~~~~-~~---~~---~- 182 (280)
+++..+.|+++++++|++.+.+..... .. +. .
T Consensus 159 ~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~ 238 (354)
T KOG0024|consen 159 VHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKAL 238 (354)
T ss_pred hhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhc
Confidence 777889999999999999988766544 11 11 1
Q ss_pred --CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCceE------------EEEeecHHHHHHHHHHHHCCCcee
Q 023556 183 --EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGFR------------FVVTSNGEVLKKLNPYLESGKVKP 245 (280)
Q Consensus 183 --~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~~------------~~~~~~~~~l~~l~~ll~~G~l~~ 245 (280)
..+|++|||+| .++.++.+++.+|+++..|.......++ -.+......+..+++++++|++..
T Consensus 239 g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~g~fry~~~~y~~ai~li~sGki~~ 318 (354)
T KOG0024|consen 239 GKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVALKEVDLRGSFRYCNGDYPTAIELVSSGKIDV 318 (354)
T ss_pred cccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCCCccccChhhhhhheeeeeeeeeeccccHHHHHHHHHcCCcCc
Confidence 34999999999 5899999999999988877655333222 133334568999999999999988
Q ss_pred ecCCCcccchhhHHHHHHHHHhCCC-CeeEEEEeC
Q 023556 246 IIDPKGPFPFSQVVEAFSYIETNKA-TGKVVIHPI 279 (280)
Q Consensus 246 ~~~~~~~~~l~~v~~A~~~l~~~~~-~gkvVv~~~ 279 (280)
....|+.|+++++.+||+.+..++. .-|+++..+
T Consensus 319 k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~ 353 (354)
T KOG0024|consen 319 KPLITHRYKFDDADEAFETLQHGEEGVIKVIITGP 353 (354)
T ss_pred hhheecccccchHHHHHHHHHhCcCCceEEEEeCC
Confidence 8877889999999999999998875 357887764
No 9
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.87 E-value=6.4e-21 Score=172.39 Aligned_cols=189 Identities=26% Similarity=0.411 Sum_probs=150.1
Q ss_pred eeEEEEcccCCC---ccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE----------
Q 023556 84 MKAWLYGEYGGV---DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV---------- 150 (280)
Q Consensus 84 mka~~~~~~g~~---~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~---------- 150 (280)
|||+++..++.+ +.+++. +.|.|.|++|||+|+|.++|+|++|++.+.|.++. ...+|.++|||+
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~-~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~-~~~~p~v~G~e~~G~V~~vG~~ 78 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLP-EPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGS-TKALPVPPGFEGSGTVVAAGGG 78 (324)
T ss_pred CeEEEEeecCCCccccEEEec-ccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCC-CCCCCcCCCcceEEEEEEECCC
Confidence 789999888765 568888 89999999999999999999999999999887642 123455555555
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 v~~~~~vGd~V~~~~~~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~vlv~~~g~g~vG~ 158 (324)
T cd08291 79 PLAQSLIGKRVAFLAGSYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGMLETAREEGAKAVVHTAAASALGR 158 (324)
T ss_pred ccccCCCCCEEEecCCCCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHHHhhccCCCcEEEEccCccHHHH
Confidence
Q ss_pred --------------EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCEE
Q 023556 151 --------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTV 208 (280)
Q Consensus 151 --------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~v 208 (280)
+++.+++++++++++|++++++++..++.+. .+++|++|||+| .....+++++++|++
T Consensus 159 ~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g~~~~~~~~~~l~~~G~~ 238 (324)
T cd08291 159 MLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVGGGLTGQILLAMPYGSTL 238 (324)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHhhCCCCEE
Confidence 5567888999999999999999988776543 257999999998 567889999999999
Q ss_pred EEEcCCCCC----C--------ceEEEE--------eecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhC
Q 023556 209 VALTGAVTP----P--------GFRFVV--------TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETN 268 (280)
Q Consensus 209 V~~g~~~~~----~--------~~~~~~--------~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~ 268 (280)
+.+|..... . ...+.. ....+.+++++++++ |.+++.+.. +|+|+|+.+|++.++++
T Consensus 239 v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~--~~~l~~~~~a~~~~~~~ 315 (324)
T cd08291 239 YVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-TELKTTFAS--RYPLALTLEAIAFYSKN 315 (324)
T ss_pred EEEEecCCCCcccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-Cccccceee--EEcHHHHHHHHHHHHhC
Confidence 999864311 1 001100 112467889999998 999887664 89999999999999999
Q ss_pred CCCeeEEEE
Q 023556 269 KATGKVVIH 277 (280)
Q Consensus 269 ~~~gkvVv~ 277 (280)
+..||+||.
T Consensus 316 ~~~Gkvv~~ 324 (324)
T cd08291 316 MSTGKKLLI 324 (324)
T ss_pred CCCCeEEeC
Confidence 999999873
No 10
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.87 E-value=4.5e-21 Score=176.82 Aligned_cols=126 Identities=16% Similarity=0.227 Sum_probs=97.7
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCccccC-----CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCC--ce
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLP-----EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP--GF 220 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~-----~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~--~~ 220 (280)
+++.+++|+++++++|+++++++.++++.+.+ +++|+||||+| .+..++++++++|+++.+|...... .+
T Consensus 221 ~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~ 300 (371)
T cd08281 221 AVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSV 300 (371)
T ss_pred EEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCCceeee
Confidence 45577889999999999999999877654432 47999999998 4789999999999999998754211 11
Q ss_pred E----------E--EEee---cHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 023556 221 R----------F--VVTS---NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 276 (280)
Q Consensus 221 ~----------~--~~~~---~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv 276 (280)
. + .... ..+.+.++++++++|++++....++.|+|+|+.+|++.+++++..+|+|+
T Consensus 301 ~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi~ 371 (371)
T cd08281 301 PALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVIL 371 (371)
T ss_pred cHHHHhhcCCEEEEEecCCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence 1 1 1111 24678999999999999865444569999999999999999988877663
No 11
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.87 E-value=8.7e-21 Score=174.05 Aligned_cols=126 Identities=20% Similarity=0.192 Sum_probs=96.0
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCC--Cc
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTP--PG 219 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~--~~ 219 (280)
+++.+++++++++++|++++++++++++.+. .+++|+||||+| .+..++++++++|+++.+|..... ..
T Consensus 206 ~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~~~~ 285 (358)
T TIGR03451 206 AVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLE 285 (358)
T ss_pred EEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCceee
Confidence 3446788899999999999999987765432 147999999998 478999999999999999875421 11
Q ss_pred e----------EE--EEe---ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 220 F----------RF--VVT---SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 220 ~----------~~--~~~---~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
+ .+ ... ...+.++++++++++|++++....+++|+|+|+.+|++.+++++.. |+||.
T Consensus 286 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~~~~ 357 (358)
T TIGR03451 286 LPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVL-RSVVE 357 (358)
T ss_pred ccHHHHhhcCCEEEEeecCCCCcHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcc-eeEEe
Confidence 1 11 111 1357889999999999998654444689999999999999988775 77764
No 12
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.86 E-value=1.5e-20 Score=170.82 Aligned_cols=188 Identities=21% Similarity=0.236 Sum_probs=142.4
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
|||+++..+ +.++++ +.+.|.++++||+|+|.++|+|++|++.+.|.++. ....|.++|||+
T Consensus 1 mka~~~~~~---~~l~~~-~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~-~~~~p~i~G~e~~G~V~~vG~~v~~ 75 (339)
T cd08239 1 MRGAVFPGD---RTVELR-EFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRA-PAYQGVIPGHEPAGVVVAVGPGVTH 75 (339)
T ss_pred CeEEEEecC---CceEEE-ecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCc-cCCCCceeccCceEEEEEECCCCcc
Confidence 799998754 348999 99999999999999999999999999988765421 111233444433
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 76 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~ 155 (339)
T cd08239 76 FRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHA 155 (339)
T ss_pred CCCCCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHH
Confidence
Q ss_pred -------------------------------------EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccE
Q 023556 151 -------------------------------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDV 187 (280)
Q Consensus 151 -------------------------------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~Dv 187 (280)
+++.++++.++++++|+++++++++++ .+. .+++|+
T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~-~~~~~~~~~~~~~d~ 234 (339)
T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDD-VQEIRELTSGAGADV 234 (339)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcch-HHHHHHHhCCCCCCE
Confidence 345678889999999999999987755 221 147999
Q ss_pred EEeCCCC---HHHHHhccccCCEEEEEcCCCCCC-c---------eEE--EEeecHHHHHHHHHHHHCCCceeecCCCcc
Q 023556 188 VYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPP-G---------FRF--VVTSNGEVLKKLNPYLESGKVKPIIDPKGP 252 (280)
Q Consensus 188 V~d~~g~---~~~~l~~l~~gG~vV~~g~~~~~~-~---------~~~--~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~ 252 (280)
||||+|. +..++++|+++|+++.+|...... . ..+ ......+.++++++++++|.+++....+++
T Consensus 235 vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~ 314 (339)
T cd08239 235 AIECSGNTAARRLALEAVRPWGRLVLVGEGGELTIEVSNDLIRKQRTLIGSWYFSVPDMEECAEFLARHKLEVDRLVTHR 314 (339)
T ss_pred EEECCCCHHHHHHHHHHhhcCCEEEEEcCCCCcccCcHHHHHhCCCEEEEEecCCHHHHHHHHHHHHcCCCChhHeEEEE
Confidence 9999982 478999999999999998754211 0 001 112235789999999999999764444468
Q ss_pred cchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 253 FPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 253 ~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
|+|+|+++|++.+++++ .||+||++
T Consensus 315 ~~l~~~~~a~~~~~~~~-~gKvvi~~ 339 (339)
T cd08239 315 FGLDQAPEAYALFAQGE-SGKVVFVF 339 (339)
T ss_pred ecHHHHHHHHHHHHcCC-ceEEEEeC
Confidence 99999999999998875 69999874
No 13
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.86 E-value=1.3e-20 Score=171.45 Aligned_cols=193 Identities=35% Similarity=0.515 Sum_probs=153.8
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCC---CCCcccCceE----------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDS---PLPTVPGYDV---------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~---~~P~i~G~e~---------- 150 (280)
|+...+..+.+...+.+.++.++|.|.+++++|++.++++|+.|++++.|.+.. .. .+|.+.++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~-~~~~~~~p~ii~~~g~~~~~~~~~~ 83 (347)
T KOG1198|consen 5 IRRVSLVSPPGGGEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSP-IPLGREFPGIIGRDGSGVVGAVESV 83 (347)
T ss_pred cceEEEeccCCCcceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCC-CCCccCCCCccccccCCceeEEecc
Confidence 444455444444334444489999999999999999999999999999998863 23 5675555555
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 84 g~~~~~~~~~g~~~~~~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv 163 (347)
T KOG1198|consen 84 GDDVVGGWVHGDAVVAFLSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLV 163 (347)
T ss_pred ccccccceEeeeEEeeccCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEE
Confidence
Q ss_pred -----------------------EEecChhhHHHHHhCCCCEEEeCCCCCccccC-----CCccEEEeCCC--CHHHHHh
Q 023556 151 -----------------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDLP-----EKFDVVYDAIG--QCDRAVK 200 (280)
Q Consensus 151 -----------------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~-----~g~DvV~d~~g--~~~~~l~ 200 (280)
+++++.++.++++++|+|+++||+++++.+.. ++||+||||+| .....+.
T Consensus 164 ~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~vg~~~~~~~~~ 243 (347)
T KOG1198|consen 164 LGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCVGGSTLTKSLS 243 (347)
T ss_pred EeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEECCCCCccccchh
Confidence 78899999999999999999999999887764 47999999998 5778888
Q ss_pred ccccCCEEEEEcCCC------C-C-------------------CceEEEEeecHHHHHHHHHHHHCCCceeecCCCcccc
Q 023556 201 AIKEGGTVVALTGAV------T-P-------------------PGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFP 254 (280)
Q Consensus 201 ~l~~gG~vV~~g~~~------~-~-------------------~~~~~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~ 254 (280)
++..+|+...++... . . ..+.+.+...++.++.+.+++++|++++.+.. +||
T Consensus 244 ~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ie~gkikp~i~~--~~p 321 (347)
T KOG1198|consen 244 CLLKGGGGAYIGLVGDELANYKLDDLWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLKALVELIEKGKIKPVIDS--VYP 321 (347)
T ss_pred hhccCCceEEEEeccccccccccccchhhhhhhhheeeeeeccceeeeeecCCHHHHHHHHHHHHcCcccCCcce--eee
Confidence 998888655443332 0 0 01123445578999999999999999999986 999
Q ss_pred hhhHHHHHHHHHhCCCCeeEEEEeC
Q 023556 255 FSQVVEAFSYIETNKATGKVVIHPI 279 (280)
Q Consensus 255 l~~v~~A~~~l~~~~~~gkvVv~~~ 279 (280)
++++.+|++.+..+...||++++++
T Consensus 322 ~~~~~ea~~~~~~~~~~GK~vl~~~ 346 (347)
T KOG1198|consen 322 FSQAKEAFEKLEKSHATGKVVLEKD 346 (347)
T ss_pred HHHHHHHHHHHhhcCCcceEEEEec
Confidence 9999999999999999999999875
No 14
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=99.85 E-value=1.2e-19 Score=164.73 Aligned_cols=180 Identities=19% Similarity=0.281 Sum_probs=138.9
Q ss_pred EEEcccCCC--ccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE--------------
Q 023556 87 WLYGEYGGV--DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV-------------- 150 (280)
Q Consensus 87 ~~~~~~g~~--~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~-------------- 150 (280)
+.+..+|.+ ..++++ +.|.|.|+++||+|||.++|+|++|++.+.|.++. ...|.++|||+
T Consensus 2 ~~~~~~g~~~~~~l~~~-~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~--~~~p~i~G~e~~G~V~~vG~~v~~~ 78 (329)
T TIGR02822 2 WEVERPGPIEDGPLRFV-ERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPV--HRPRVTPGHEVVGEVAGRGADAGGF 78 (329)
T ss_pred eeeecCCcCCCCCceEE-eCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCC--CCCCccCCcceEEEEEEECCCCccc
Confidence 556666655 468999 99999999999999999999999999999887641 11233333333
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 ~~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~ 158 (329)
T TIGR02822 79 AVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRAL 158 (329)
T ss_pred CCCCEEEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHH
Confidence
Q ss_pred -----------------------------------EEecChhhHHHHHhCCCCEEEeCCCCCccccCCCccEEEeCCC--
Q 023556 151 -----------------------------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG-- 193 (280)
Q Consensus 151 -----------------------------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~~g~DvV~d~~g-- 193 (280)
+++.+++|+++++++|++++|++.+.. .+++|+++++.|
T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~----~~~~d~~i~~~~~~ 234 (329)
T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTP----PEPLDAAILFAPAG 234 (329)
T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccC----cccceEEEECCCcH
Confidence 456788899999999999999865321 246899898876
Q ss_pred -CHHHHHhccccCCEEEEEcCCC-CCCce----------EE--EEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHH
Q 023556 194 -QCDRAVKAIKEGGTVVALTGAV-TPPGF----------RF--VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVV 259 (280)
Q Consensus 194 -~~~~~l~~l~~gG~vV~~g~~~-~~~~~----------~~--~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~ 259 (280)
.+..++++|+++|+++.+|... ....+ .+ .....++.+.++++++++|++++. +++|+|+|++
T Consensus 235 ~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~i---~~~~~l~~~~ 311 (329)
T TIGR02822 235 GLVPPALEALDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSNTRADAREFLELAAQHGVRVT---THTYPLSEAD 311 (329)
T ss_pred HHHHHHHHhhCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEeecCCHHHHHHHHHHHHhCCCeeE---EEEEeHHHHH
Confidence 5889999999999999998742 11111 11 122245778899999999999853 3589999999
Q ss_pred HHHHHHHhCCCCeeEEE
Q 023556 260 EAFSYIETNKATGKVVI 276 (280)
Q Consensus 260 ~A~~~l~~~~~~gkvVv 276 (280)
+|++.+++++..||+||
T Consensus 312 ~A~~~~~~~~~~Gkvvl 328 (329)
T TIGR02822 312 RALRDLKAGRFDGAAVL 328 (329)
T ss_pred HHHHHHHcCCCceEEEe
Confidence 99999999999999987
No 15
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.84 E-value=6.2e-20 Score=165.19 Aligned_cols=187 Identities=19% Similarity=0.254 Sum_probs=134.7
Q ss_pred ceeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecC-hHHHHHHcCCCCCCC-CCCCcccCceE----------
Q 023556 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALN-PVDGKRRQGKFKATD-SPLPTVPGYDV---------- 150 (280)
Q Consensus 83 ~mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~-~~D~~~~~g~~~~~~-~~~P~i~G~e~---------- 150 (280)
+|||+++..+ +.++++ +.+.|+|++|||+|||.++||| ++|++.+.|.++... ..+|.++|||+
T Consensus 1 ~~ka~~~~~~---~~l~~~-e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~ 76 (308)
T TIGR01202 1 KTQAIVLSGP---NQIELR-EVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPD 76 (308)
T ss_pred CceEEEEeCC---CeEEEE-EecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCC
Confidence 4789998754 358999 9999999999999999999996 699999999875322 35788999998
Q ss_pred -----------------------------------------------------------------------EEe--cChh
Q 023556 151 -----------------------------------------------------------------------AAT--SSTR 157 (280)
Q Consensus 151 -----------------------------------------------------------------------~~~--~s~~ 157 (280)
+.+ .+.-
T Consensus 77 v~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~a~~~~~~~a~~~~~~~~~~~~~vlV~G~G~v 156 (308)
T TIGR01202 77 TGFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQGALLALAATARHAVAGAEVKVLPDLIVGHGTL 156 (308)
T ss_pred CCCCCCCEEEEeCccccccccccCCcccceEEcCHHHceeCCCCCCHHHHhhhHHHHHHHHHHhcccCCCcEEEECCCHH
Confidence 000 0000
Q ss_pred ---hHHHHHhCCCCE------------------EEeCCCCCccccCCCccEEEeCCC---CHHHHHhccccCCEEEEEcC
Q 023556 158 ---NLEFLKSLGADL------------------AIDYTKDNFEDLPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 158 ---~~~~l~~lga~~------------------vid~~~~~~~~~~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~ 213 (280)
-.++++.+|+.. ++|+.+. ..+++|+||||+| .++.++++++++|+++.+|.
T Consensus 157 G~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~----~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 157 GRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKD----PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred HHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhc----cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEee
Confidence 112233334432 2332211 1257999999999 37899999999999999987
Q ss_pred CCCCCceE----------E--EEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 214 AVTPPGFR----------F--VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 214 ~~~~~~~~----------~--~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
...+..++ + ......++++++++++++|++++....++.|+|+|+.+|++.+.+++..+|++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~ 308 (308)
T TIGR01202 233 YTEPVNFDFVPAFMKEARLRIAAEWQPGDLHAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSDPDCLKMILD 308 (308)
T ss_pred cCCCcccccchhhhcceEEEEecccchhHHHHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence 64332221 1 1112357899999999999998765555799999999999999887777999874
No 16
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=99.84 E-value=8.5e-20 Score=167.79 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=91.6
Q ss_pred ecChhh-HHHHHhCCCCEEEeCCCCC-ccccCCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCceE------
Q 023556 153 TSSTRN-LEFLKSLGADLAIDYTKDN-FEDLPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGFR------ 221 (280)
Q Consensus 153 ~~s~~~-~~~l~~lga~~vid~~~~~-~~~~~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~~------ 221 (280)
+.++++ .+.++++|+++++++.+.+ +.+..+++|+|||++| .++.++++++++|+++.+|.......++
T Consensus 214 ~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~ 293 (360)
T PLN02586 214 SSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKPLELPIFPLVL 293 (360)
T ss_pred eCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCCCCccCHHHHHh
Confidence 344444 3555789999888876532 2222357999999998 3788999999999999998654221111
Q ss_pred ----E--EEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 222 ----F--VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 222 ----~--~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
. ........++++++++++|++++.+ ++|+|+|+++|++.+++++..||+||.+
T Consensus 294 ~~~~i~g~~~~~~~~~~~~~~li~~g~i~~~~---~~~~l~~~~~A~~~~~~~~~~gkvvi~~ 353 (360)
T PLN02586 294 GRKLVGGSDIGGIKETQEMLDFCAKHNITADI---ELIRMDEINTAMERLAKSDVRYRFVIDV 353 (360)
T ss_pred CCeEEEEcCcCCHHHHHHHHHHHHhCCCCCcE---EEEeHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 1 1112347899999999999998755 3799999999999999999889999976
No 17
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.83 E-value=3.1e-19 Score=161.14 Aligned_cols=188 Identities=21% Similarity=0.358 Sum_probs=142.9
Q ss_pred ceeEEEEcc-c-CCC--ccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE--------
Q 023556 83 EMKAWLYGE-Y-GGV--DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV-------- 150 (280)
Q Consensus 83 ~mka~~~~~-~-g~~--~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~-------- 150 (280)
+||+|++.+ + |++ +.++++ +.+.|+|++|||+|||+++|||+.|++...+. ...|.++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~p~~~~~evlVkv~a~~in~~~~~~~~~~-----~~~p~v~G~e~~G~V~~~~ 75 (329)
T cd08294 2 KAKTWVLKKHFDGKPKESDFELV-EEELPPLKDGEVLCEALFLSVDPYMRPYSKRL-----NEGDTMIGTQVAKVIESKN 75 (329)
T ss_pred CceEEEEecCCCCCCCccceEEE-ecCCCCCCCCcEEEEEEEEecCHHHhcccccC-----CCCCcEecceEEEEEecCC
Confidence 599999988 4 454 789999 99999999999999999999999887632210 01122222222
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 76 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~ 155 (329)
T cd08294 76 SKFPVGTIVVASFGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGA 155 (329)
T ss_pred CCCCCCCEEEeeCCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccH
Confidence
Q ss_pred -----------------EEecChhhHHHHHhCCCCEEEeCCCCCcccc-----CCCccEEEeCCC--CHHHHHhccccCC
Q 023556 151 -----------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL-----PEKFDVVYDAIG--QCDRAVKAIKEGG 206 (280)
Q Consensus 151 -----------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~-----~~g~DvV~d~~g--~~~~~l~~l~~gG 206 (280)
+++.++++.++++++|++++++++++++.+. .+++|+|||++| .+..++++++++|
T Consensus 156 vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~~~~~~~~~~l~~~G 235 (329)
T cd08294 156 VGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGGEFSSTVLSHMNDFG 235 (329)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCHHHHHHHHHhhccCC
Confidence 5667889999999999999999998776543 257999999998 5789999999999
Q ss_pred EEEEEcCCCC---C-----C---------ceEEEE---e----ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHH
Q 023556 207 TVVALTGAVT---P-----P---------GFRFVV---T----SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAF 262 (280)
Q Consensus 207 ~vV~~g~~~~---~-----~---------~~~~~~---~----~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~ 262 (280)
+++.+|.... . . ...+.. . ...+.++++++++++|.+++.... .|+++++.+|+
T Consensus 236 ~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~--~~~l~~~~~A~ 313 (329)
T cd08294 236 RVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYREHV--TEGFENMPQAF 313 (329)
T ss_pred EEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCCccc--ccCHHHHHHHH
Confidence 9999874321 0 0 001111 0 113457889999999999876554 79999999999
Q ss_pred HHHHhCCCCeeEEEEe
Q 023556 263 SYIETNKATGKVVIHP 278 (280)
Q Consensus 263 ~~l~~~~~~gkvVv~~ 278 (280)
+.+++++..||+|+++
T Consensus 314 ~~~~~~~~~gkvvv~~ 329 (329)
T cd08294 314 IGMLKGENTGKAIVKV 329 (329)
T ss_pred HHHHcCCCCCeEEEeC
Confidence 9999999899999874
No 18
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=99.83 E-value=3.2e-19 Score=164.89 Aligned_cols=123 Identities=17% Similarity=0.201 Sum_probs=93.2
Q ss_pred ecChh-hHHHHHhCCCCEEEeCCCCC-ccccCCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCceE------
Q 023556 153 TSSTR-NLEFLKSLGADLAIDYTKDN-FEDLPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGFR------ 221 (280)
Q Consensus 153 ~~s~~-~~~~l~~lga~~vid~~~~~-~~~~~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~~------ 221 (280)
+.+++ +.++++++|++++|++.+.. +.+..+++|+||||+| .+..++++++++|+++.+|....+..++
T Consensus 209 ~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~ 288 (375)
T PLN02178 209 SRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLDLPIFPLVL 288 (375)
T ss_pred eCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCCccCHHHHHh
Confidence 33434 46788889999999876531 2222357999999998 3789999999999999998654321111
Q ss_pred ----E--EEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 222 ----F--VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 222 ----~--~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
+ ......+++.++++++++|++++.+ +.|+|+|+++|++.+++++..||+||++
T Consensus 289 ~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~~i---~~~~l~~~~~A~~~~~~~~~~gkvvi~~ 348 (375)
T PLN02178 289 GRKMVGGSQIGGMKETQEMLEFCAKHKIVSDI---ELIKMSDINSAMDRLAKSDVRYRFVIDV 348 (375)
T ss_pred CCeEEEEeCccCHHHHHHHHHHHHhCCCcccE---EEEeHHHHHHHHHHHHcCCCceEEEEEe
Confidence 1 1122357899999999999998765 3799999999999999999889999986
No 19
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.83 E-value=3.2e-19 Score=162.25 Aligned_cols=190 Identities=23% Similarity=0.344 Sum_probs=143.6
Q ss_pred eeEEEEcccCCCccEEEeeeccC----CCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE---------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTV----PQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV--------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~----p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~--------- 150 (280)
+|++....+. ++.|+++ +.+. |+|++|||||||+|+|||+.|++.+.|.++. ....|.++|+++
T Consensus 8 ~~~~~~~~~~-~~~~~~~-~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~-~~~~p~~~g~~~~g~~~~~~v 84 (338)
T cd08295 8 LKAYVTGFPK-ESDLELR-TTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDS-LYLPPFKPGEVITGYGVAKVV 84 (338)
T ss_pred EecCCCCCCC-ccceEEE-EecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCcc-ccCCCcCCCCeEeccEEEEEE
Confidence 5666644333 4679999 8877 8899999999999999999999999885421 123345555432
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 85 ~~~v~~~~vGd~V~~~g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~v 164 (338)
T cd08295 85 DSGNPDFKVGDLVWGFTGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAV 164 (338)
T ss_pred ecCCCCCCCCCEEEecCCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHH
Confidence
Q ss_pred ----------------EEecChhhHHHHHh-CCCCEEEeCCCC-Ccccc-----CCCccEEEeCCC--CHHHHHhccccC
Q 023556 151 ----------------AATSSTRNLEFLKS-LGADLAIDYTKD-NFEDL-----PEKFDVVYDAIG--QCDRAVKAIKEG 205 (280)
Q Consensus 151 ----------------~~~~s~~~~~~l~~-lga~~vid~~~~-~~~~~-----~~g~DvV~d~~g--~~~~~l~~l~~g 205 (280)
+++.++++.+++++ +|+++++++.++ ++.+. .+++|++||++| .+..++++|+++
T Consensus 165 G~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g~~~~~~~~~~l~~~ 244 (338)
T cd08295 165 GQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVGGKMLDAVLLNMNLH 244 (338)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCCHHHHHHHHHHhccC
Confidence 45678899999998 999999998653 55432 258999999998 578999999999
Q ss_pred CEEEEEcCCCCC--------Cc--------eEE---EEee----cHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHH
Q 023556 206 GTVVALTGAVTP--------PG--------FRF---VVTS----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAF 262 (280)
Q Consensus 206 G~vV~~g~~~~~--------~~--------~~~---~~~~----~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~ 262 (280)
|+++.+|..... .. +.+ .... ..+.++++++++++|.+++.... .|+++++.+|+
T Consensus 245 G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~--~~~l~~~~~A~ 322 (338)
T cd08295 245 GRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYVEDI--ADGLESAPEAF 322 (338)
T ss_pred cEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEceeec--ccCHHHHHHHH
Confidence 999999854311 00 011 1111 13557889999999999987654 69999999999
Q ss_pred HHHHhCCCCeeEEEEe
Q 023556 263 SYIETNKATGKVVIHP 278 (280)
Q Consensus 263 ~~l~~~~~~gkvVv~~ 278 (280)
+.+++++..||+|+++
T Consensus 323 ~~~~~~~~~GkvVl~~ 338 (338)
T cd08295 323 VGLFTGSNIGKQVVKV 338 (338)
T ss_pred HHHhcCCCCceEEEEC
Confidence 9999999899999874
No 20
>PLN02740 Alcohol dehydrogenase-like
Probab=99.83 E-value=2.9e-19 Score=165.44 Aligned_cols=127 Identities=21% Similarity=0.233 Sum_probs=95.3
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCC--cccc-----CCCccEEEeCCC---CHHHHHhccccC-CEEEEEcCCCCCCc
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDN--FEDL-----PEKFDVVYDAIG---QCDRAVKAIKEG-GTVVALTGAVTPPG 219 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~--~~~~-----~~g~DvV~d~~g---~~~~~l~~l~~g-G~vV~~g~~~~~~~ 219 (280)
+++.+++++++++++|++++|++++.+ +.+. .+++|+||||+| .+..++++++++ |+++.+|....+..
T Consensus 228 ~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~ 307 (381)
T PLN02740 228 GVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKM 307 (381)
T ss_pred EEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCce
Confidence 345678899999999999999987643 4332 137999999999 478999999997 99999987643211
Q ss_pred e-----------EEE--Ee-e--cHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 220 F-----------RFV--VT-S--NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 220 ~-----------~~~--~~-~--~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
+ .+. .. . ....+.++++++.+|.+++....+++|+|+|+++|++.+++++. .|++|++
T Consensus 308 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~-~k~~~~~ 381 (381)
T PLN02740 308 LPLHPMELFDGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKA-LRCLLHL 381 (381)
T ss_pred ecccHHHHhcCCeEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCc-eeEEEeC
Confidence 1 111 11 1 13578999999999998764444569999999999999998865 5998863
No 21
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.83 E-value=1.2e-19 Score=157.37 Aligned_cols=127 Identities=23% Similarity=0.384 Sum_probs=105.9
Q ss_pred EEecChhhHHHHHh-CCCCEEEeCCCCCcccc-----CCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCC---C---
Q 023556 151 AATSSTRNLEFLKS-LGADLAIDYTKDNFEDL-----PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAV---T--- 216 (280)
Q Consensus 151 ~~~~s~~~~~~l~~-lga~~vid~~~~~~~~~-----~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~---~--- 216 (280)
.+..+++|++++++ +|.|.+|||+++++.+. .+|+|+.||++| .++..+..|+..+|++.||... .
T Consensus 180 GiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeNVGg~v~DAv~~~ln~~aRi~~CG~IS~YN~~~~ 259 (340)
T COG2130 180 GIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGAISQYNAPEL 259 (340)
T ss_pred EecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCeEEEEEcCCchHHHHHHHhhccccceeeeeehhhcCCCCC
Confidence 56788999999988 99999999999998765 379999999999 5899999999999999998754 1
Q ss_pred C---CceE-----------EEE-ee----cHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 217 P---PGFR-----------FVV-TS----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 217 ~---~~~~-----------~~~-~~----~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
+ ..+. |.. .. ..+.++++..|+++|+|+-..+. +-+|+++.+||..|.+|+.+||+|++
T Consensus 260 ~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~eti--~dGlEnaP~Af~gLl~G~N~GK~vvK 337 (340)
T COG2130 260 PPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRETI--VDGLENAPEAFIGLLSGKNFGKLVVK 337 (340)
T ss_pred CCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEeee--hhhhhccHHHHHHHhcCCccceEEEE
Confidence 1 1111 111 11 23788999999999999988865 77899999999999999999999999
Q ss_pred eC
Q 023556 278 PI 279 (280)
Q Consensus 278 ~~ 279 (280)
+.
T Consensus 338 v~ 339 (340)
T COG2130 338 VA 339 (340)
T ss_pred ec
Confidence 85
No 22
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.82 E-value=9.1e-19 Score=159.85 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=97.0
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCccc---c--CCCcc-EEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCc--
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFED---L--PEKFD-VVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPG-- 219 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~---~--~~g~D-vV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~-- 219 (280)
+++.+++++++++++|+++++++++.+..+ . .+++| +||||+| .+..++++|+++|+++.+|.......
T Consensus 190 ~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~ 269 (347)
T PRK10309 190 AIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHDLHLT 269 (347)
T ss_pred EECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCcccC
Confidence 344678899999999999999987654221 1 14788 9999999 47899999999999999986542110
Q ss_pred -----------eEE--EEee-----cHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 220 -----------FRF--VVTS-----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 220 -----------~~~--~~~~-----~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
+.+ .... ..+.++++++++++|.+++....++.|+|+|+++|++.+++++..||+|+++
T Consensus 270 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~ 346 (347)
T PRK10309 270 SATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQI 346 (347)
T ss_pred hhhhhHHhhcCcEEEEEeccccCCcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeC
Confidence 011 1111 1477899999999999865444456899999999999999998889999975
No 23
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=99.82 E-value=1.9e-18 Score=158.66 Aligned_cols=125 Identities=17% Similarity=0.224 Sum_probs=92.6
Q ss_pred EecChhhHHHH-HhCCCCEEEeCCCCC-ccccCCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCce------
Q 023556 152 ATSSTRNLEFL-KSLGADLAIDYTKDN-FEDLPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGF------ 220 (280)
Q Consensus 152 ~~~s~~~~~~l-~~lga~~vid~~~~~-~~~~~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~------ 220 (280)
++.++++++.+ +++|+++++++.+.. +.+...++|++|||+| .+..++++++++|+++.+|....+..+
T Consensus 210 ~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~ 289 (357)
T PLN02514 210 ISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVTPMLM 289 (357)
T ss_pred EeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCCcccHHHHh
Confidence 44555565444 569998888765432 2222357999999998 478999999999999999876432111
Q ss_pred ------EEEEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 023556 221 ------RFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI 279 (280)
Q Consensus 221 ------~~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~~ 279 (280)
.........++.++++++++|++++.+ +.|+|+|+.+|++.+++++..||+||++.
T Consensus 290 ~~~~~i~g~~~~~~~~~~~~~~~~~~g~l~~~i---~~~~l~~~~~A~~~~~~~~~~gk~v~~~~ 351 (357)
T PLN02514 290 LGRKVITGSFIGSMKETEEMLEFCKEKGLTSMI---EVVKMDYVNTAFERLEKNDVRYRFVVDVA 351 (357)
T ss_pred hCCcEEEEEecCCHHHHHHHHHHHHhCCCcCcE---EEEcHHHHHHHHHHHHcCCCceeEEEEcc
Confidence 111222446899999999999987654 27999999999999999998899999874
No 24
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.81 E-value=2.2e-18 Score=155.63 Aligned_cols=192 Identities=23% Similarity=0.366 Sum_probs=151.6
Q ss_pred ceeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE------------
Q 023556 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------ 150 (280)
Q Consensus 83 ~mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------ 150 (280)
+||++.+.++|.+..++++ +.+.|.++++||+|+|.++|+|++|+++..|.++. ..+|.++|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~--~~~~~~~g~e~~G~v~~vG~~v~ 77 (327)
T PRK10754 1 MAKRIEFHKHGGPEVLQAV-EFTPADPAENEVQVENKAIGINYIDTYIRSGLYPP--PSLPSGLGTEAAGVVSKVGSGVK 77 (327)
T ss_pred CceEEEEeccCChhHeEEe-eccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCC--CCCCCccCcceEEEEEEeCCCCC
Confidence 4999999999888889999 89999999999999999999999999998887642 23455666665
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 78 ~~~~Gd~V~~~~~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~ 157 (327)
T PRK10754 78 HIKVGDRVVYAQSALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIA 157 (327)
T ss_pred CCCCCCEEEECCCCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHH
Confidence
Q ss_pred ------------EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCEEEE
Q 023556 151 ------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTVVA 210 (280)
Q Consensus 151 ------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~ 210 (280)
+++.++++.++++++|++++++++..++.+. .+++|++|||+| .+..++++++++|++|.
T Consensus 158 ~~lak~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~ 237 (327)
T PRK10754 158 CQWAKALGAKLIGTVGSAQKAQRAKKAGAWQVINYREENIVERVKEITGGKKVRVVYDSVGKDTWEASLDCLQRRGLMVS 237 (327)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEEcCCCCcHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHhccCCEEEE
Confidence 4667788889999999999998877665432 257999999998 57889999999999999
Q ss_pred EcCCCCC---Cce--------EEEEe-----------ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhC
Q 023556 211 LTGAVTP---PGF--------RFVVT-----------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETN 268 (280)
Q Consensus 211 ~g~~~~~---~~~--------~~~~~-----------~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~ 268 (280)
+|..... ... .+... ...+.+.++++++++|.+++....++.|+++++.+|++.+.++
T Consensus 238 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~ 317 (327)
T PRK10754 238 FGNASGPVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESR 317 (327)
T ss_pred EccCCCCCCCcCHHHHhccCceEEecceeecccCCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcC
Confidence 9865321 110 11111 1124466789999999998654334689999999999999999
Q ss_pred CCCeeEEEE
Q 023556 269 KATGKVVIH 277 (280)
Q Consensus 269 ~~~gkvVv~ 277 (280)
+..+|+||.
T Consensus 318 ~~~~~~~~~ 326 (327)
T PRK10754 318 ATQGSSLLI 326 (327)
T ss_pred CCcceEEEe
Confidence 988999986
No 25
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.81 E-value=3e-18 Score=156.87 Aligned_cols=194 Identities=21% Similarity=0.282 Sum_probs=143.6
Q ss_pred ccceeEEEEcc-c-CC--CccEEEeee---ccCC-CCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCc--eE
Q 023556 81 PSEMKAWLYGE-Y-GG--VDVLKFDEK---VTVP-QVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGY--DV 150 (280)
Q Consensus 81 p~~mka~~~~~-~-g~--~~~l~l~~~---~~~p-~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~--e~ 150 (280)
+.++|.+++.+ + |. ++.|++. + .+.| ++++|||||||.|+++|+.|+..+.+..+ ....|.++|+ |+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~--~~~~p~~~G~~~~~ 82 (348)
T PLN03154 6 VVENKQVILKNYIDGIPKETDMEVK-LGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHD--SYLPPFVPGQRIEG 82 (348)
T ss_pred cccceEEEEecCCCCCCCcccEEEE-eecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCC--CCCCCcCCCCeeEe
Confidence 34467888754 3 22 3669999 5 3555 35899999999999999999876544222 1234666775 33
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 83 ~G~v~~vg~~v~~~~~Gd~V~~~~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~V 162 (348)
T PLN03154 83 FGVSKVVDSDDPNFKPGDLISGITGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSV 162 (348)
T ss_pred eEEEEEEecCCCCCCCCCEEEecCCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEE
Confidence
Q ss_pred -------------------------EEecChhhHHHHH-hCCCCEEEeCCCC-Ccccc-----CCCccEEEeCCC--CHH
Q 023556 151 -------------------------AATSSTRNLEFLK-SLGADLAIDYTKD-NFEDL-----PEKFDVVYDAIG--QCD 196 (280)
Q Consensus 151 -------------------------~~~~s~~~~~~l~-~lga~~vid~~~~-~~~~~-----~~g~DvV~d~~g--~~~ 196 (280)
+++.+++++++++ ++|++++||++++ ++.+. .+++|++|||+| .+.
T Consensus 163 lV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG~~~~~ 242 (348)
T PLN03154 163 FVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVGGDMLD 242 (348)
T ss_pred EEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCCHHHHH
Confidence 4557788999997 7999999999864 54432 257999999998 578
Q ss_pred HHHhccccCCEEEEEcCCCCCC--------c--------eEEEEee-------cHHHHHHHHHHHHCCCceeecCCCccc
Q 023556 197 RAVKAIKEGGTVVALTGAVTPP--------G--------FRFVVTS-------NGEVLKKLNPYLESGKVKPIIDPKGPF 253 (280)
Q Consensus 197 ~~l~~l~~gG~vV~~g~~~~~~--------~--------~~~~~~~-------~~~~l~~l~~ll~~G~l~~~~~~~~~~ 253 (280)
.++++++++|+++.+|...... . +.+.... ..+.++++++++++|++++.+.. +|
T Consensus 243 ~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~~~~~--~~ 320 (348)
T PLN03154 243 AALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVYIEDM--SE 320 (348)
T ss_pred HHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccCceec--cc
Confidence 9999999999999998653110 0 0011000 13568889999999999987654 89
Q ss_pred chhhHHHHHHHHHhCCCCeeEEEEeC
Q 023556 254 PFSQVVEAFSYIETNKATGKVVIHPI 279 (280)
Q Consensus 254 ~l~~v~~A~~~l~~~~~~gkvVv~~~ 279 (280)
+|+++.+|++.+++++..||+||++.
T Consensus 321 ~L~~~~~A~~~l~~g~~~GKvVl~~~ 346 (348)
T PLN03154 321 GLESAPAALVGLFSGKNVGKQVIRVA 346 (348)
T ss_pred CHHHHHHHHHHHHcCCCCceEEEEec
Confidence 99999999999999999999999874
No 26
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.81 E-value=9.4e-19 Score=161.23 Aligned_cols=126 Identities=20% Similarity=0.269 Sum_probs=95.0
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCC--Ccccc-----CCCccEEEeCCC---CHHHHHhccccC-CEEEEEcCCCC--C
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKD--NFEDL-----PEKFDVVYDAIG---QCDRAVKAIKEG-GTVVALTGAVT--P 217 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~--~~~~~-----~~g~DvV~d~~g---~~~~~l~~l~~g-G~vV~~g~~~~--~ 217 (280)
+++.+++++++++++|++++|++.+. ++.+. .+++|+||||+| .+..++++++++ |+++.+|.... .
T Consensus 216 ~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~ 295 (368)
T cd08300 216 GIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQE 295 (368)
T ss_pred EEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCc
Confidence 45578889999999999999998764 34332 147999999998 478999999987 99999986531 1
Q ss_pred Cce-----------E-EEE--eecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 218 PGF-----------R-FVV--TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 218 ~~~-----------~-~~~--~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
..+ . +.. ....+.+.++++++++|++++....+++|+|+|+.+|++.+++++. .|++|+
T Consensus 296 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~~~~ 368 (368)
T cd08300 296 ISTRPFQLVTGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKS-IRTVVK 368 (368)
T ss_pred cccCHHHHhhcCeEEEEEecccCcHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCC-ceeeeC
Confidence 110 0 011 1235788999999999999875444569999999999999988765 688874
No 27
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.81 E-value=2.5e-18 Score=155.53 Aligned_cols=177 Identities=21% Similarity=0.369 Sum_probs=137.7
Q ss_pred CCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE----------------------
Q 023556 93 GGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV---------------------- 150 (280)
Q Consensus 93 g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~---------------------- 150 (280)
..++.+++. +.+.|+|++|||||||.|+|+|+.|++ |.++ ....|.++|+|+
T Consensus 14 ~~~~~l~~~-~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~--~~~~~~i~G~~~~g~v~~~~~~~~~GdrV~~~~~ 87 (325)
T TIGR02825 14 PTDSDFELK-TVELPPLNNGEVLLEALFLSVDPYMRV---AAKR--LKEGDTMMGQQVARVVESKNVALPKGTIVLASPG 87 (325)
T ss_pred CCCCceEEE-eccCCCCCCCcEEEEEEEEecCHHHhc---ccCc--CCCCCcEecceEEEEEEeCCCCCCCCCEEEEecC
Confidence 345779999 899999999999999999999997654 4332 112367888888
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 88 ~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi 167 (325)
T TIGR02825 88 WTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVV 167 (325)
T ss_pred ceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEE
Confidence
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCC-Ccccc-----CCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCCC------
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKD-NFEDL-----PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVT------ 216 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~-~~~~~-----~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~~------ 216 (280)
+++.++++.++++++|+++++++++. .+.+. .+++|+||||+| .+..++++++++|+++.+|....
T Consensus 168 ~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~ 247 (325)
T TIGR02825 168 GAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGP 247 (325)
T ss_pred EEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCHHHHHHHHHHhCcCcEEEEecchhhcccCCC
Confidence 56678899999999999999999874 44332 257999999998 57899999999999999985321
Q ss_pred -CC----------ceEE--EE-ee-----cHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 217 -PP----------GFRF--VV-TS-----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 217 -~~----------~~~~--~~-~~-----~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
+. .+.+ .. .. ..+.++++++++++|++++.... .|+|+++.+|++.+++++..||+|++
T Consensus 248 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~--~~~l~~~~~A~~~~~~~~~~gkvVv~ 325 (325)
T TIGR02825 248 LPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYKEYV--IEGFENMPAAFMGMLKGENLGKTIVK 325 (325)
T ss_pred CCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCcccceec--cccHHHHHHHHHHHhcCCCCCeEEeC
Confidence 10 0111 11 01 13578899999999999987654 78999999999999999988999973
No 28
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.81 E-value=3.8e-18 Score=153.57 Aligned_cols=190 Identities=18% Similarity=0.296 Sum_probs=149.8
Q ss_pred eeEEEEcccCCC-ccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE------------
Q 023556 84 MKAWLYGEYGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------ 150 (280)
Q Consensus 84 mka~~~~~~g~~-~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------ 150 (280)
|||+++.+++.+ +.+++. +.+.|.+.++||+|+|.++++|+.|++.+.|.++. ....|.++|||+
T Consensus 1 m~a~~~~~~~~~~~~~~~~-~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~-~~~~p~~~G~e~~G~V~~~G~~v~ 78 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIG-EVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGY-KPELPAIGGSEAVGVVDAVGEGVK 78 (324)
T ss_pred CeeEEEccCCChhHeEEEe-ecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCC-CCCCCCCCCcceEEEEEEeCCCCC
Confidence 799999877765 458899 99999999999999999999999999999887652 234577788877
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 ~~~~Gd~V~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~ 158 (324)
T cd08292 79 GLQVGQRVAVAPVHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLLDFLGVKPGQWLIQNAAGGAVGKLVAM 158 (324)
T ss_pred CCCCCCEEEeccCCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHHHhhCCCCCCEEEEcccccHHHHHHHH
Confidence
Q ss_pred ----------EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCEEEEEc
Q 023556 151 ----------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALT 212 (280)
Q Consensus 151 ----------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g 212 (280)
+++.++++.++++++|+++++++++.++.+. .+++|+||||+| .+..++++++++|+++.+|
T Consensus 159 ~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g 238 (324)
T cd08292 159 LAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVGGKLAGELLSLLGEGGTLVSFG 238 (324)
T ss_pred HHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCCChhHHHHHHhhcCCcEEEEEe
Confidence 5667788888888899999999887665432 257999999998 5789999999999999998
Q ss_pred CCCC-CC----------ceEEEEee------------cHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCC
Q 023556 213 GAVT-PP----------GFRFVVTS------------NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNK 269 (280)
Q Consensus 213 ~~~~-~~----------~~~~~~~~------------~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~ 269 (280)
.... .. ...+.... ..+.++++++++++|.+++.+. +.|+++++.+|++.+.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~--~~~~~~~~~~a~~~~~~~~ 316 (324)
T cd08292 239 SMSGEPMQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLPVE--AVFDLGDAAKAAAASMRPG 316 (324)
T ss_pred cCCCCCCcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCccc--cEecHHHHHHHHHHHHcCC
Confidence 6421 11 11111100 1356888999999999986543 5899999999999999888
Q ss_pred CCeeEEEE
Q 023556 270 ATGKVVIH 277 (280)
Q Consensus 270 ~~gkvVv~ 277 (280)
..+|+|++
T Consensus 317 ~~~kvvv~ 324 (324)
T cd08292 317 RAGKVLLR 324 (324)
T ss_pred CCceEEeC
Confidence 88898874
No 29
>PLN02827 Alcohol dehydrogenase-like
Probab=99.81 E-value=1.3e-18 Score=161.06 Aligned_cols=125 Identities=17% Similarity=0.194 Sum_probs=95.5
Q ss_pred ecChhhHHHHHhCCCCEEEeCCCC--Ccccc-----CCCccEEEeCCC---CHHHHHhccccC-CEEEEEcCCCCCCceE
Q 023556 153 TSSTRNLEFLKSLGADLAIDYTKD--NFEDL-----PEKFDVVYDAIG---QCDRAVKAIKEG-GTVVALTGAVTPPGFR 221 (280)
Q Consensus 153 ~~s~~~~~~l~~lga~~vid~~~~--~~~~~-----~~g~DvV~d~~g---~~~~~l~~l~~g-G~vV~~g~~~~~~~~~ 221 (280)
+.++++.++++++|++++|++++. ++.+. .+++|+||||+| .+..++++++++ |+++.+|.......+.
T Consensus 225 ~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~~~~~ 304 (378)
T PLN02827 225 DINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVS 304 (378)
T ss_pred CCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCCcccc
Confidence 358889999999999999998752 33332 247999999999 378999999998 9999998764221111
Q ss_pred -----------EE--Ee---ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 222 -----------FV--VT---SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 222 -----------~~--~~---~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
+. .. ....+++++++++++|++++....+++|+|+|+.+|++.+++++. +|+||.+
T Consensus 305 ~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~vi~~ 376 (378)
T PLN02827 305 AHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKC-LRCVIHM 376 (378)
T ss_pred ccHHHHhcCceEEeeecCCCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCc-eEEEEEe
Confidence 00 00 123578899999999999974333468999999999999998876 6999976
No 30
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=99.81 E-value=1.7e-18 Score=160.91 Aligned_cols=123 Identities=16% Similarity=0.241 Sum_probs=85.7
Q ss_pred cChhhHHHHHhCCCCEEEeCC-CCCcccc------CCCccEEEeCCC-----------------CHHHHHhccccCCEEE
Q 023556 154 SSTRNLEFLKSLGADLAIDYT-KDNFEDL------PEKFDVVYDAIG-----------------QCDRAVKAIKEGGTVV 209 (280)
Q Consensus 154 ~s~~~~~~l~~lga~~vid~~-~~~~~~~------~~g~DvV~d~~g-----------------~~~~~l~~l~~gG~vV 209 (280)
.+++++++++++|++. +++. +.++.+. .+++|++|||+| .++.++++++++|+++
T Consensus 218 ~~~~r~~~a~~~Ga~~-v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~ 296 (393)
T TIGR02819 218 LNPARLAQARSFGCET-VDLSKDATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIG 296 (393)
T ss_pred CCHHHHHHHHHcCCeE-EecCCcccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEE
Confidence 4566788888888864 5543 3333321 247999999998 2788999999999999
Q ss_pred EEcCCC--CCCce---------EEE----------E----eecHHHHHHHHHHHHCCCceeecCCC-cccchhhHHHHHH
Q 023556 210 ALTGAV--TPPGF---------RFV----------V----TSNGEVLKKLNPYLESGKVKPIIDPK-GPFPFSQVVEAFS 263 (280)
Q Consensus 210 ~~g~~~--~~~~~---------~~~----------~----~~~~~~l~~l~~ll~~G~l~~~~~~~-~~~~l~~v~~A~~ 263 (280)
.+|... ..... .+. + ....+.+.++++++++|++++....+ +.|+|+|+++||+
T Consensus 297 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~ 376 (393)
T TIGR02819 297 IPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQTPVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYA 376 (393)
T ss_pred EeeecCCcccccccccccccccccchHHhhccCceEEeccCChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHH
Confidence 999863 11110 000 0 00113346899999999997643333 5899999999999
Q ss_pred HHHhCCCCeeEEEEe
Q 023556 264 YIETNKATGKVVIHP 278 (280)
Q Consensus 264 ~l~~~~~~gkvVv~~ 278 (280)
.+.+++. +|++|++
T Consensus 377 ~~~~~~~-~Kvvi~~ 390 (393)
T TIGR02819 377 EFDAGAA-KKFVIDP 390 (393)
T ss_pred HHhhCCc-eEEEEeC
Confidence 9998754 8999875
No 31
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=99.80 E-value=2.1e-18 Score=159.00 Aligned_cols=127 Identities=18% Similarity=0.249 Sum_probs=93.7
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCC--CCcccc-----CCCccEEEeCCC---CHHHHHhccccC-CEEEEEcCCCC--C
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTK--DNFEDL-----PEKFDVVYDAIG---QCDRAVKAIKEG-GTVVALTGAVT--P 217 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~--~~~~~~-----~~g~DvV~d~~g---~~~~~l~~l~~g-G~vV~~g~~~~--~ 217 (280)
+++.+++++++++++|+++++|+.+ +++.+. .+++|++|||+| .+..++++++++ |+++.+|.... .
T Consensus 215 ~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~ 294 (368)
T TIGR02818 215 AIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQE 294 (368)
T ss_pred EEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCc
Confidence 3456788999999999999998874 223221 147999999998 478999999986 99999986531 1
Q ss_pred Cce---E------E--EEe---ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 218 PGF---R------F--VVT---SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 218 ~~~---~------~--~~~---~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
..+ . + ... .....+.++++++++|++++....++.|+|+|+.+|++.+++++. .|++|+.
T Consensus 295 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~-~k~~v~~ 368 (368)
T TIGR02818 295 ISTRPFQLVTGRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKS-IRTVIHY 368 (368)
T ss_pred ccccHHHHhccceEEEeeccCCCcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCc-eeEEeeC
Confidence 111 0 0 000 124678999999999998765444579999999999999988764 6998863
No 32
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=99.80 E-value=2.1e-18 Score=158.02 Aligned_cols=119 Identities=21% Similarity=0.281 Sum_probs=87.2
Q ss_pred ChhhHHHHHhCCCCEEEeCCCCCccc--cCCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCC--CCceE------
Q 023556 155 STRNLEFLKSLGADLAIDYTKDNFED--LPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVT--PPGFR------ 221 (280)
Q Consensus 155 s~~~~~~l~~lga~~vid~~~~~~~~--~~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~--~~~~~------ 221 (280)
+++|+++++++|++. +++.++++.+ ..+++|+||||+| .+..++++++++|+++.+|.... ...+.
T Consensus 208 ~~~~~~~~~~~Ga~~-v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~ 286 (355)
T cd08230 208 PDPKADIVEELGATY-VNSSKTPVAEVKLVGEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNR 286 (355)
T ss_pred CHHHHHHHHHcCCEE-ecCCccchhhhhhcCCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhh
Confidence 578889999999986 5776655432 2357999999999 37899999999999999987553 11111
Q ss_pred -E---------EEeecHHHHHHHHHHHHCCC------ceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 222 -F---------VVTSNGEVLKKLNPYLESGK------VKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 222 -~---------~~~~~~~~l~~l~~ll~~G~------l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
+ ......++++++++++.++. +++.+. ++|+|+|+.+|++.++++. +|+||++
T Consensus 287 ~~~~k~~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~--~~~~l~~~~~a~~~~~~~~--~K~v~~~ 355 (355)
T cd08230 287 DLVLGNKALVGSVNANKRHFEQAVEDLAQWKYRWPGVLERLIT--RRVPLEEFAEALTEKPDGE--IKVVIEW 355 (355)
T ss_pred hHhhcCcEEEEecCCchhhHHHHHHHHHhcccccccchHHhee--eeecHHHHHHHHHhcccCC--eEEEeeC
Confidence 0 11123467888999998876 343333 5899999999999987654 5999864
No 33
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.79 E-value=4.4e-18 Score=155.48 Aligned_cols=126 Identities=22% Similarity=0.307 Sum_probs=97.2
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCccccC------CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCce-
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLP------EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGF- 220 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~------~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~- 220 (280)
+++.++++.++++++|++.++++++.++.+.+ +++|+||||+| .+..++++|+++|+++.+|....+..+
T Consensus 202 ~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~ 281 (351)
T cd08233 202 VSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEKPISFN 281 (351)
T ss_pred EECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCCCCCccC
Confidence 34467888888888999999999887765432 46999999997 478999999999999999876532211
Q ss_pred ---------E--EEEeecHHHHHHHHHHHHCCCceeecCCCcccchhhH-HHHHHHHHhCCCC-eeEEE
Q 023556 221 ---------R--FVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQV-VEAFSYIETNKAT-GKVVI 276 (280)
Q Consensus 221 ---------~--~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v-~~A~~~l~~~~~~-gkvVv 276 (280)
. .......++++++.+++++|.+++....+++|+++|+ ++|++.+.+++.. ||+||
T Consensus 282 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~ 350 (351)
T cd08233 282 PNDLVLKEKTLTGSICYTREDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILV 350 (351)
T ss_pred HHHHHhhCcEEEEEeccCcchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEe
Confidence 1 1112245789999999999999754333358999996 7999999999874 99987
No 34
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=99.79 E-value=2.2e-18 Score=158.66 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=92.5
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCC--Ccccc-----CCCccEEEeCCC---CHHHHHhccccC-CEEEEEcCCCCCCc
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKD--NFEDL-----PEKFDVVYDAIG---QCDRAVKAIKEG-GTVVALTGAVTPPG 219 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~--~~~~~-----~~g~DvV~d~~g---~~~~~l~~l~~g-G~vV~~g~~~~~~~ 219 (280)
+++.++++.++++++|++.++++.+. .+.+. .+++|++|||+| .+..++++++++ |+++.+|....+..
T Consensus 217 ~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~ 296 (369)
T cd08301 217 GVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAV 296 (369)
T ss_pred EEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcc
Confidence 44567888899999999999988752 33221 247999999998 378999999996 99999987642111
Q ss_pred --e---------EEEE-----eecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 023556 220 --F---------RFVV-----TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 276 (280)
Q Consensus 220 --~---------~~~~-----~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv 276 (280)
+ .+.. ...+..++++++++++|.++.....+++|+|+|+.+|++.+++++. .|+||
T Consensus 297 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~k~~~ 368 (369)
T cd08301 297 FSTHPMNLLNGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGEC-LRCIL 368 (369)
T ss_pred cccCHHHHhcCCeEEEEecCCCChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCc-eeEEe
Confidence 1 1111 0124578899999999998764434468999999999999999886 48876
No 35
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.79 E-value=3.4e-18 Score=156.37 Aligned_cols=127 Identities=18% Similarity=0.298 Sum_probs=96.3
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCC---cccc------CCCcc----EEEeCCC---CHHHHHhccccCCEEEEEcCC
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDN---FEDL------PEKFD----VVYDAIG---QCDRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~---~~~~------~~g~D----vV~d~~g---~~~~~l~~l~~gG~vV~~g~~ 214 (280)
+++.+++++++++++|++++|++.+.+ +.+. .+|+| +||||+| .++.++++++++|+++.+|..
T Consensus 195 ~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 195 AIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred EEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcC
Confidence 456788999999999999999987643 2221 13665 8999999 367899999999999999876
Q ss_pred CCCCceE----------E--EEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 215 VTPPGFR----------F--VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 215 ~~~~~~~----------~--~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
.....+. . ......+.++++++++++|++++.... ..|+|+|+++||+.+++++..||+++++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~g~i~~~~~i-~~~~l~~~~~A~~~~~~~~~~~k~~~~~ 349 (349)
T TIGR03201 275 MAKTEYRLSNLMAFHARALGNWGCPPDRYPAALDLVLDGKIQLGPFV-ERRPLDQIEHVFAAAHHHKLKRRAILTP 349 (349)
T ss_pred CCCcccCHHHHhhcccEEEEEecCCHHHHHHHHHHHHcCCCCcccce-EEecHHHHHHHHHHHHcCCccceEEecC
Confidence 5322111 1 111245689999999999999764333 2689999999999999999889998863
No 36
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.79 E-value=1.1e-17 Score=151.91 Aligned_cols=186 Identities=23% Similarity=0.323 Sum_probs=142.7
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
|||+++..++.. ++++ +.+.|.++++||+|+|.++|+|++|++...|.++.. ..|.++|||+
T Consensus 1 m~a~~~~~~~~~--~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~--~~p~~~g~e~~G~v~~vG~~v~~ 75 (333)
T cd08296 1 YKAVQVTEPGGP--LELV-ERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGL--SYPRVPGHEVVGRIDAVGEGVSR 75 (333)
T ss_pred CeEEEEccCCCC--ceEE-eccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCC--CCCcccCcceeEEEEEECCCCcc
Confidence 799999877543 8888 999999999999999999999999999887754210 1111111111
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 76 ~~~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~ 155 (333)
T cd08296 76 WKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNA 155 (333)
T ss_pred CCCCCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHH
Confidence
Q ss_pred ------------------------------------EEecChhhHHHHHhCCCCEEEeCCCCCcccc---CCCccEEEeC
Q 023556 151 ------------------------------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL---PEKFDVVYDA 191 (280)
Q Consensus 151 ------------------------------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~---~~g~DvV~d~ 191 (280)
+++.+++++++++++|+++++++...++... .+++|+++|+
T Consensus 156 ~~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~ 235 (333)
T cd08296 156 LRNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILAT 235 (333)
T ss_pred HHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEEC
Confidence 5667778899999999999999887665432 2579999999
Q ss_pred CC---CHHHHHhccccCCEEEEEcCCCCCCce----------EE--EEeecHHHHHHHHHHHHCCCceeecCCCcccchh
Q 023556 192 IG---QCDRAVKAIKEGGTVVALTGAVTPPGF----------RF--VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFS 256 (280)
Q Consensus 192 ~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~----------~~--~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~ 256 (280)
.| .+..++++++++|+++.+|.......+ .+ ........++.++++++++.+++.+ ..|+++
T Consensus 236 ~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~v---~~~~~~ 312 (333)
T cd08296 236 APNAKAISALVGGLAPRGKLLILGAAGEPVAVSPLQLIMGRKSIHGWPSGTALDSEDTLKFSALHGVRPMV---ETFPLE 312 (333)
T ss_pred CCchHHHHHHHHHcccCCEEEEEecCCCCCCcCHHHHhhcccEEEEeCcCCHHHHHHHHHHHHhCCCCceE---EEEEHH
Confidence 86 578999999999999999875422111 11 1122457888999999999988653 379999
Q ss_pred hHHHHHHHHHhCCCCeeEEEE
Q 023556 257 QVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 257 ~v~~A~~~l~~~~~~gkvVv~ 277 (280)
++.+|++.++.++.+||+||+
T Consensus 313 ~~~~a~~~~~~~~~~gk~v~~ 333 (333)
T cd08296 313 KANEAYDRMMSGKARFRVVLT 333 (333)
T ss_pred HHHHHHHHHHCCCCceeEEeC
Confidence 999999999999999999874
No 37
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.78 E-value=2.2e-17 Score=149.16 Aligned_cols=193 Identities=24% Similarity=0.351 Sum_probs=150.8
Q ss_pred ceeEEEEcccCC--CccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE----------
Q 023556 83 EMKAWLYGEYGG--VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV---------- 150 (280)
Q Consensus 83 ~mka~~~~~~g~--~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~---------- 150 (280)
.|||+++.+++. ++.++++ +.+.|.+.++||+|+|.++|+|+.|++...|.++. ...+|.++|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~-~~~~p~~~g~e~~G~v~~vG~~ 78 (329)
T cd08250 1 SFRKLVVHRLSPNFREATSIV-DVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDP-GVKPPFDCGFEGVGEVVAVGEG 78 (329)
T ss_pred CceEEEeccCCCCcccCceEE-ecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCC-CCCCCcccCceeEEEEEEECCC
Confidence 499999999887 6778999 89999999999999999999999999998887642 235677788777
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 v~~~~~Gd~V~~~~~g~~~s~~~v~~~~~~~ip~~~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~ 158 (329)
T cd08250 79 VTDFKVGDAVATMSFGAFAEYQVVPARHAVPVPELKPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQ 158 (329)
T ss_pred CCCCCCCCEEEEecCcceeEEEEechHHeEECCCCcchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHH
Confidence
Q ss_pred ----------EEecChhhHHHHHhCCCCEEEeCCCCCcccc-----CCCccEEEeCCC--CHHHHHhccccCCEEEEEcC
Q 023556 151 ----------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL-----PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 151 ----------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~-----~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~ 213 (280)
+++.++++.++++++|++.++++...++... .+++|++|||+| .+..++++++++|++|.+|.
T Consensus 159 ~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~~~~g~~~~~~~~~~l~~~g~~v~~g~ 238 (329)
T cd08250 159 LAKLAGCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYESVGGEMFDTCVDNLALKGRLIVIGF 238 (329)
T ss_pred HHHHcCCeEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhcCCCCeEEEECCcHHHHHHHHHHhccCCeEEEEec
Confidence 4566778888998999999988776554321 257999999998 57899999999999999976
Q ss_pred CCCC-----------C---------ceEEEEee-------cHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHH
Q 023556 214 AVTP-----------P---------GFRFVVTS-------NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIE 266 (280)
Q Consensus 214 ~~~~-----------~---------~~~~~~~~-------~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~ 266 (280)
.... . ...+.... ..+.+.++++++++|.+++....++.|+++++++|++.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~ 318 (329)
T cd08250 239 ISGYQSGTGPSPVKGATLPPKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLY 318 (329)
T ss_pred ccCCcccCcccccccccccHHHhhcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHH
Confidence 4311 0 01111110 2456788999999999987544334699999999999999
Q ss_pred hCCCCeeEEEE
Q 023556 267 TNKATGKVVIH 277 (280)
Q Consensus 267 ~~~~~gkvVv~ 277 (280)
+++..+|+|++
T Consensus 319 ~~~~~~kvvv~ 329 (329)
T cd08250 319 SGKNIGKVVVE 329 (329)
T ss_pred cCCCCceEEeC
Confidence 98888898874
No 38
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.78 E-value=1.6e-17 Score=151.16 Aligned_cols=181 Identities=23% Similarity=0.338 Sum_probs=136.1
Q ss_pred CccEEEeeeccCCCCC-CCcEEEEEEEEecChHHHHHHcCCCC-CCCCCCCcccCceE----------------------
Q 023556 95 VDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPLPTVPGYDV---------------------- 150 (280)
Q Consensus 95 ~~~l~l~~~~~~p~~~-~~eVlVkV~aagl~~~D~~~~~g~~~-~~~~~~P~i~G~e~---------------------- 150 (280)
++.+++. +.+.|+|. +|||||||+|+|||+.|+........ .....+|.++|+|+
T Consensus 20 ~~~~~~~-~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~ 98 (345)
T cd08293 20 AENFRVE-ECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTS 98 (345)
T ss_pred ccceEEE-eccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEe
Confidence 3679999 99999974 99999999999999999754321110 01124567788888
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 99 ~~~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~ 178 (345)
T cd08293 99 FNWPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLL 178 (345)
T ss_pred cCCCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHc
Confidence
Q ss_pred ------EEecChhhHHHHHh-CCCCEEEeCCCCCcccc-----CCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCCC
Q 023556 151 ------AATSSTRNLEFLKS-LGADLAIDYTKDNFEDL-----PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVT 216 (280)
Q Consensus 151 ------~~~~s~~~~~~l~~-lga~~vid~~~~~~~~~-----~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~~ 216 (280)
+++.++++.+++++ +|++++++++++++.+. .+++|+||||+| .+..++++|+++|++|.+|....
T Consensus 179 G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~ 258 (345)
T cd08293 179 GCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGGEISDTVISQMNENSHIILCGQISQ 258 (345)
T ss_pred CCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCcHHHHHHHHHhccCCEEEEEeeeec
Confidence 45567888899876 99999999988776543 258999999998 57899999999999999984210
Q ss_pred --------C------------CceEEE---Eee----cHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCC
Q 023556 217 --------P------------PGFRFV---VTS----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNK 269 (280)
Q Consensus 217 --------~------------~~~~~~---~~~----~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~ 269 (280)
. ..+.+. ... ..+.++++++++++|.+++.... .++++++.+|++.+++++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~--~~~l~~~~~A~~~~~~~~ 336 (345)
T cd08293 259 YNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGKLKVKETV--YEGLENAGEAFQSMMNGG 336 (345)
T ss_pred ccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHHHHHHHCCCccceeEE--eecHHHHHHHHHHHhcCC
Confidence 0 011110 011 13567888899999999876543 569999999999999998
Q ss_pred CCeeEEEEe
Q 023556 270 ATGKVVIHP 278 (280)
Q Consensus 270 ~~gkvVv~~ 278 (280)
..||+|+++
T Consensus 337 ~~gkvvl~~ 345 (345)
T cd08293 337 NIGKQIVKV 345 (345)
T ss_pred CCCeEEEEC
Confidence 889999874
No 39
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.77 E-value=1.2e-17 Score=152.36 Aligned_cols=183 Identities=16% Similarity=0.215 Sum_probs=126.2
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCC--CCCCCcccCceE-----------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT--DSPLPTVPGYDV----------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~--~~~~P~i~G~e~----------- 150 (280)
.|++++..++ .++++ +.+.|. ++|||+|||+++|||++|+++++|.++.. ...+|.++|||+
T Consensus 3 ~~~~~~~~~~---~~~~~-~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~~ 77 (341)
T cd08237 3 NQVYRLVRPK---FFEVT-YEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTGT 77 (341)
T ss_pred ccceEEeccc---eEEEe-ecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCCc
Confidence 4677776554 48998 899995 99999999999999999999999976311 135788999988
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 78 ~~vGdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~~~~~~~a~~a~~~~~ 157 (341)
T cd08237 78 YKVGTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAAFTELVSVGVHAISRFE 157 (341)
T ss_pred cCCCCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhhhhchHHHHHHHHHHHh
Confidence
Q ss_pred ------------------------------------EEecChhhHHHHHhCCCCEEEeCCCCCccccCCCccEEEeCCC-
Q 023556 151 ------------------------------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG- 193 (280)
Q Consensus 151 ------------------------------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~~g~DvV~d~~g- 193 (280)
+++.+++|++++++++++..++ ++.+. .++|+||||+|
T Consensus 158 ~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~----~~~~~-~g~d~viD~~G~ 232 (341)
T cd08237 158 QIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLID----DIPED-LAVDHAFECVGG 232 (341)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehh----hhhhc-cCCcEEEECCCC
Confidence 2334444555555444433221 11111 26999999998
Q ss_pred -----CHHHHHhccccCCEEEEEcCCCCCCce----------EE--EEeecHHHHHHHHHHHHCC-----CceeecCCCc
Q 023556 194 -----QCDRAVKAIKEGGTVVALTGAVTPPGF----------RF--VVTSNGEVLKKLNPYLESG-----KVKPIIDPKG 251 (280)
Q Consensus 194 -----~~~~~l~~l~~gG~vV~~g~~~~~~~~----------~~--~~~~~~~~l~~l~~ll~~G-----~l~~~~~~~~ 251 (280)
.++.++++++++|+++.+|....+..+ .+ ......++++++++++++| .+++.+. +
T Consensus 233 ~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~--~ 310 (341)
T cd08237 233 RGSQSAINQIIDYIRPQGTIGLMGVSEYPVPINTRMVLEKGLTLVGSSRSTREDFERAVELLSRNPEVAEYLRKLVG--G 310 (341)
T ss_pred CccHHHHHHHHHhCcCCcEEEEEeecCCCcccCHHHHhhCceEEEEecccCHHHHHHHHHHHHhCCcccCChHHHhc--c
Confidence 278999999999999999865422111 11 1122357799999999999 3444444 5
Q ss_pred ccch---hhHHHHHHHHHhCCCCeeEEEEeC
Q 023556 252 PFPF---SQVVEAFSYIETNKATGKVVIHPI 279 (280)
Q Consensus 252 ~~~l---~~v~~A~~~l~~~~~~gkvVv~~~ 279 (280)
.|+| +++.+|++.+.++ ..||+||++.
T Consensus 311 ~~~l~~l~~~~~a~~~~~~~-~~gKvvi~~~ 340 (341)
T cd08237 311 VFPVRSINDIHRAFESDLTN-SWGKTVMEWE 340 (341)
T ss_pred ccccccHHHHHHHHHHHhhc-CcceEEEEee
Confidence 7887 5666666666554 6799999864
No 40
>PRK10083 putative oxidoreductase; Provisional
Probab=99.76 E-value=4.2e-17 Score=148.11 Aligned_cols=190 Identities=21% Similarity=0.261 Sum_probs=142.3
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
|||+++.+++ .+++. +.+.|.|+++||+|||.++|+|++|++.+.|.++. ..+|.++|||+
T Consensus 1 m~a~~~~~~~---~~~~~-~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~--~~~p~i~G~e~~G~V~~vG~~v~~ 74 (339)
T PRK10083 1 MKSIVIEKPN---SLAIE-ERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPF--AKYPRVIGHEFFGVIDAVGEGVDA 74 (339)
T ss_pred CeEEEEecCC---eeEEE-eccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCc--CCCCcccccceEEEEEEECCCCcc
Confidence 7899987654 48899 99999999999999999999999999998876531 12233333333
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~~~~~~~~a~~~~~ 154 (339)
T PRK10083 75 ARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAVMVEPFTIAANVTG 154 (339)
T ss_pred CCCCCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHhhhchHHHHHHHHH
Confidence
Q ss_pred ------------------------------------EEecChhhHHHHHhCCCCEEEeCCCCCccccC----CCccEEEe
Q 023556 151 ------------------------------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDLP----EKFDVVYD 190 (280)
Q Consensus 151 ------------------------------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~----~g~DvV~d 190 (280)
++..++++.++++++|+++++++++.++.+.+ .++|++||
T Consensus 155 ~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid 234 (339)
T PRK10083 155 RTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIID 234 (339)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEE
Confidence 34456788888899999999998776554432 24679999
Q ss_pred CCC---CHHHHHhccccCCEEEEEcCCCCCCce----------EE-EEeecHHHHHHHHHHHHCCCceeecCCCcccchh
Q 023556 191 AIG---QCDRAVKAIKEGGTVVALTGAVTPPGF----------RF-VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFS 256 (280)
Q Consensus 191 ~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~----------~~-~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~ 256 (280)
|+| .+..++++|+++|+++.+|.......+ .+ ......+.++++++++++|.+++....++.|+++
T Consensus 235 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~l~ 314 (339)
T PRK10083 235 AACHPSILEEAVTLASPAARIVLMGFSSEPSEIVQQGITGKELSIFSSRLNANKFPVVIDWLSKGLIDPEKLITHTFDFQ 314 (339)
T ss_pred CCCCHHHHHHHHHHhhcCCEEEEEccCCCCceecHHHHhhcceEEEEEecChhhHHHHHHHHHcCCCChHHheeeeecHH
Confidence 998 478999999999999999865421111 11 1112457899999999999998742222589999
Q ss_pred hHHHHHHHHHhCC-CCeeEEEEeC
Q 023556 257 QVVEAFSYIETNK-ATGKVVIHPI 279 (280)
Q Consensus 257 ~v~~A~~~l~~~~-~~gkvVv~~~ 279 (280)
++++|++.++++. ..+|+|+++.
T Consensus 315 ~~~~a~~~~~~~~~~~~kvvv~~~ 338 (339)
T PRK10083 315 HVADAIELFEKDQRHCCKVLLTFA 338 (339)
T ss_pred HHHHHHHHHhcCCCceEEEEEecC
Confidence 9999999998654 4599999764
No 41
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=99.76 E-value=4e-17 Score=150.22 Aligned_cols=126 Identities=16% Similarity=0.199 Sum_probs=92.1
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCC--cccc-----CCCccEEEeCCC---CHHHHHhccccC-CEEEEEcCCCC-CC
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDN--FEDL-----PEKFDVVYDAIG---QCDRAVKAIKEG-GTVVALTGAVT-PP 218 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~--~~~~-----~~g~DvV~d~~g---~~~~~l~~l~~g-G~vV~~g~~~~-~~ 218 (280)
+++.+++++++++++|+++++++.+.+ +.+. .+++|+||||+| .+..++++++++ |+++.+|.... ..
T Consensus 214 ~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~ 293 (365)
T cd08277 214 GVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAEL 293 (365)
T ss_pred EEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCcccc
Confidence 455678899999999999999887532 2221 257999999998 368999999885 99999987531 10
Q ss_pred -----ce----EE--EEe---ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 219 -----GF----RF--VVT---SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 219 -----~~----~~--~~~---~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
.+ .+ ... .....++++++++++|.++.....+++|+|+|+++|++.+++++ ..|++|.
T Consensus 294 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~-~~k~~i~ 365 (365)
T cd08277 294 SIRPFQLILGRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGE-CIRTVIT 365 (365)
T ss_pred ccCHhHHhhCCEEEeeecCCCChHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCC-CceEeeC
Confidence 11 11 111 12457899999999998775444446899999999999999887 4688763
No 42
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.76 E-value=3.2e-17 Score=153.25 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=73.6
Q ss_pred CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCC-C--CCceE----------E--EEeecHHHHHHHHHHHHCCCce
Q 023556 183 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV-T--PPGFR----------F--VVTSNGEVLKKLNPYLESGKVK 244 (280)
Q Consensus 183 ~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~-~--~~~~~----------~--~~~~~~~~l~~l~~ll~~G~l~ 244 (280)
+++|++||++| .+..++++++++|+++.+++.. . ...++ + .......+++++++++++|+++
T Consensus 256 ~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~li~~g~i~ 335 (410)
T cd08238 256 QGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGGNTDDMKEAIDLMAAGKLN 335 (410)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCCCccccccHHHhhhcCcEEEEeCCCCHHHHHHHHHHHHcCCCc
Confidence 47999999987 5789999999999988775432 1 11111 1 1122457899999999999999
Q ss_pred eecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 245 PIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 245 ~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
+....+++|+|+|+.+|++.+. ++..||+||.+
T Consensus 336 ~~~~it~~~~l~~~~~A~~~~~-~~~~gKvvl~~ 368 (410)
T cd08238 336 PARMVTHIGGLNAAAETTLNLP-GIPGGKKLIYT 368 (410)
T ss_pred hhhcEEEEecHHHHHHHHHHhh-ccCCceEEEEC
Confidence 8655557999999999999999 77789999986
No 43
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.75 E-value=2.5e-17 Score=150.85 Aligned_cols=190 Identities=27% Similarity=0.328 Sum_probs=143.7
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCc-ccCceE------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPT-VPGYDV------------ 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~-i~G~e~------------ 150 (280)
|+++++...++. ..++ +.+.|.+++|||+|||.++|||++|+|.+.|..+. ...|. ++|||+
T Consensus 1 m~a~~~~~~~~~--~~~~-~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~--~~~~~~i~GHE~~G~V~evG~~~~ 75 (350)
T COG1063 1 MKAAVVYVGGGD--VRLE-EPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPF--VPPGDIILGHEFVGEVVEVGVVRG 75 (350)
T ss_pred CceeEEEecCCc--cccc-cCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCC--CCCCCcccCccceEEEEEeccccC
Confidence 567777665543 3355 67777789999999999999999999999997652 23344 899999
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 76 ~~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~~~~~aal~epla~ 155 (350)
T COG1063 76 FKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGIDEEAAALTEPLAT 155 (350)
T ss_pred CCCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCCChhhhhhcChhhh
Confidence
Q ss_pred ------------------------------------------EEecChhhHHHHHh-CCCCEEEeCCCCCcccc------
Q 023556 151 ------------------------------------------AATSSTRNLEFLKS-LGADLAIDYTKDNFEDL------ 181 (280)
Q Consensus 151 ------------------------------------------~~~~s~~~~~~l~~-lga~~vid~~~~~~~~~------ 181 (280)
+++.+++|++++++ .|++.+++...++....
T Consensus 156 ~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~ 235 (350)
T COG1063 156 AYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTG 235 (350)
T ss_pred hhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhC
Confidence 55688999999999 67776666554332221
Q ss_pred CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCC-ce----------EEEE--e-ecHHHHHHHHHHHHCCCce
Q 023556 182 PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP-GF----------RFVV--T-SNGEVLKKLNPYLESGKVK 244 (280)
Q Consensus 182 ~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~-~~----------~~~~--~-~~~~~l~~l~~ll~~G~l~ 244 (280)
..|+|++|||+| .+..++++++++|+++.+|...... .+ .+.. . .....++.+++++++|+++
T Consensus 236 g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~~~~~~~~~~~~ll~~g~i~ 315 (350)
T COG1063 236 GRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERALDLLASGKID 315 (350)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEEeccCCCCcccHHHHHHHHHcCCCC
Confidence 147999999999 4789999999999999999886442 11 1111 1 2346899999999999998
Q ss_pred eecCCCcccchhhHHHHHHHHHhCCC-CeeEEEEe
Q 023556 245 PIIDPKGPFPFSQVVEAFSYIETNKA-TGKVVIHP 278 (280)
Q Consensus 245 ~~~~~~~~~~l~~v~~A~~~l~~~~~-~gkvVv~~ 278 (280)
+....++.++++++.+|++.+.+.+. ..|+++.+
T Consensus 316 ~~~lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~ 350 (350)
T COG1063 316 PEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP 350 (350)
T ss_pred hhHceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 87555678999999999999998654 46888753
No 44
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.75 E-value=1e-16 Score=146.49 Aligned_cols=128 Identities=23% Similarity=0.285 Sum_probs=95.6
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCC--c
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP--G 219 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~--~ 219 (280)
++..++++.++++++|+++++++++.++.+. .+++|++|||+| .+..++++|+++|+++.+|...... .
T Consensus 196 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~ 275 (351)
T cd08285 196 AVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYLP 275 (351)
T ss_pred EEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCceee
Confidence 4446677888889999999999887665432 257999999998 4689999999999999998655221 1
Q ss_pred e------------EEE--E-eecHHHHHHHHHHHHCCCceeec-CCCcccchhhHHHHHHHHHhCCC-CeeEEEEe
Q 023556 220 F------------RFV--V-TSNGEVLKKLNPYLESGKVKPII-DPKGPFPFSQVVEAFSYIETNKA-TGKVVIHP 278 (280)
Q Consensus 220 ~------------~~~--~-~~~~~~l~~l~~ll~~G~l~~~~-~~~~~~~l~~v~~A~~~l~~~~~-~gkvVv~~ 278 (280)
+ .+. . ....++++++++++++|++++.. ..++.|+++++.+|++.+++++. ..|+||++
T Consensus 276 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~ 351 (351)
T cd08285 276 IPREEWGVGMGHKTINGGLCPGGRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF 351 (351)
T ss_pred cChhhhhhhccccEEEEeecCCccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence 1 011 1 11346889999999999998722 22236899999999999999874 68999864
No 45
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.74 E-value=3.6e-16 Score=141.05 Aligned_cols=193 Identities=32% Similarity=0.521 Sum_probs=147.6
Q ss_pred ceeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE------------
Q 023556 83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------ 150 (280)
Q Consensus 83 ~mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------ 150 (280)
+|||+++...+....+.+. +.+.|.+.++||+|+|.++|+|+.|+....|.++. ....|.++|+|+
T Consensus 1 ~m~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~ 78 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIG-ESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPP-PPGSSEILGLEVAGYVEDVGSDVK 78 (334)
T ss_pred CcEEEEEEecCCCcceEEE-eCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCcccceeeEEEEEEeCCCCC
Confidence 6999999988876678888 78888899999999999999999999998886642 223345566655
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 ~~~~Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~ 158 (334)
T PTZ00354 79 RFKEGDRVMALLPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAA 158 (334)
T ss_pred CCCCCCEEEEecCCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHH
Confidence
Q ss_pred -----------EEecChhhHHHHHhCCCCEEEeCCCCC-cccc------CCCccEEEeCCC--CHHHHHhccccCCEEEE
Q 023556 151 -----------AATSSTRNLEFLKSLGADLAIDYTKDN-FEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTVVA 210 (280)
Q Consensus 151 -----------~~~~s~~~~~~l~~lga~~vid~~~~~-~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~ 210 (280)
+++.++++.++++++|+++++++...+ +... .+++|++|||+| .+..++++++++|++|.
T Consensus 159 ~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~g~~i~ 238 (334)
T PTZ00354 159 QLAEKYGAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGSYLSETAEVLAVDGKWIV 238 (334)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEECCchHHHHHHHHHhccCCeEEE
Confidence 566778889999999999999887654 3322 257999999988 57899999999999999
Q ss_pred EcCCCCCC-c-e----------EEEE---e--e-------cHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHH
Q 023556 211 LTGAVTPP-G-F----------RFVV---T--S-------NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIE 266 (280)
Q Consensus 211 ~g~~~~~~-~-~----------~~~~---~--~-------~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~ 266 (280)
++...... . + .+.. . . ..+.++++++++++|.+++... +.++++++.++++.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~ 316 (334)
T PTZ00354 239 YGFMGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKPIVD--RTYPLEEVAEAHTFLE 316 (334)
T ss_pred EecCCCCcccccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCccCccc--cEEcHHHHHHHHHHHH
Confidence 97543111 0 1 0100 0 0 0134577889999999886544 4899999999999999
Q ss_pred hCCCCeeEEEEeC
Q 023556 267 TNKATGKVVIHPI 279 (280)
Q Consensus 267 ~~~~~gkvVv~~~ 279 (280)
.++..+|+|+.+.
T Consensus 317 ~~~~~~kvvv~~~ 329 (334)
T PTZ00354 317 QNKNIGKVVLTVN 329 (334)
T ss_pred hCCCCceEEEecC
Confidence 8887899999764
No 46
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.74 E-value=4.5e-16 Score=139.95 Aligned_cols=192 Identities=28% Similarity=0.403 Sum_probs=146.0
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCC-CCCCCCcccCceE------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDV------------ 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~-~~~~~P~i~G~e~------------ 150 (280)
|||+++.+.+.+..+++. +.+.|.+.+++|+|+|.++|+|+.|++...|..+. .....|.++|+|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~ 79 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPE-DVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVD 79 (324)
T ss_pred CeEEEEcCCCCccceEEe-ccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCC
Confidence 789999887777778888 78888889999999999999999999998875431 0122344444444
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 80 ~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~~~~~~~~~~~~vlI~g~~~~~g~~~ 159 (324)
T cd08244 80 PAWLGRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGLLDLATLTPGDVVLVTAAAGGLGSLL 159 (324)
T ss_pred CCCCCCEEEEccCCCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHH
Confidence
Q ss_pred ------------EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCEEEE
Q 023556 151 ------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTVVA 210 (280)
Q Consensus 151 ------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~ 210 (280)
+++.++++.++++++|++.++++++.++.+. .+++|+++||+| ....++++++++|+++.
T Consensus 160 ~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~ 239 (324)
T cd08244 160 VQLAKAAGATVVGAAGGPAKTALVRALGADVAVDYTRPDWPDQVREALGGGGVTVVLDGVGGAIGRAALALLAPGGRFLT 239 (324)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHcCCCCceEEEECCChHhHHHHHHHhccCcEEEE
Confidence 5556778888888899999998887665332 157999999998 57899999999999999
Q ss_pred EcCCCCCC-c----------eEEE---Ee-----ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCC
Q 023556 211 LTGAVTPP-G----------FRFV---VT-----SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKAT 271 (280)
Q Consensus 211 ~g~~~~~~-~----------~~~~---~~-----~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~ 271 (280)
+|...... . ..+. .. ...+.+++++++++++.+++.+. ..|+++++.+|++.+.+++..
T Consensus 240 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~~a~~~~~~~~~~ 317 (324)
T cd08244 240 YGWASGEWTALDEDDARRRGVTVVGLLGVQAERGGLRALEARALAEAAAGRLVPVVG--QTFPLERAAEAHAALEARSTV 317 (324)
T ss_pred EecCCCCCCccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCCccCccc--eEEeHHHHHHHHHHHHcCCCC
Confidence 98653211 1 1111 00 12467888999999999976543 489999999999999999988
Q ss_pred eeEEEEe
Q 023556 272 GKVVIHP 278 (280)
Q Consensus 272 gkvVv~~ 278 (280)
||+|+++
T Consensus 318 ~kvv~~~ 324 (324)
T cd08244 318 GKVLLLP 324 (324)
T ss_pred ceEEEeC
Confidence 9999864
No 47
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=99.74 E-value=8.1e-17 Score=138.85 Aligned_cols=196 Identities=27% Similarity=0.411 Sum_probs=150.4
Q ss_pred CcccceeEEEEcccCCC-ccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------
Q 023556 79 TVPSEMKAWLYGEYGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------- 150 (280)
Q Consensus 79 ~~p~~mka~~~~~~g~~-~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------- 150 (280)
.+|...|+++|.++|+| +++++. +.++|+...++|+||+.|+.|||.|+..++|.|| ..+++|.+-|+|+
T Consensus 15 q~~~~~kalvY~~hgdP~kVlql~-~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYp-vrP~~PAVgGnEGv~eVv~v 92 (354)
T KOG0025|consen 15 QMPARSKALVYSEHGDPAKVLQLK-NLELPAVPGSDVLVKMLAAPINPSDINQIQGVYP-VRPELPAVGGNEGVGEVVAV 92 (354)
T ss_pred ccccccceeeecccCCchhhheee-cccCCCCCCCceeeeeeecCCChHHhhhhccccC-CCCCCCcccCCcceEEEEEe
Confidence 35666799999999998 789999 9999998888899999999999999999999998 5788999999999
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 93 Gs~vkgfk~Gd~VIp~~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~ 172 (354)
T KOG0025|consen 93 GSNVKGFKPGDWVIPLSANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSG 172 (354)
T ss_pred cCCcCccCCCCeEeecCCCCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccH
Confidence
Q ss_pred -----------------EEecChhhHH----HHHhCCCCEEEeCCC---CCcc---ccCCCccEEEeCCC--CHHHHHhc
Q 023556 151 -----------------AATSSTRNLE----FLKSLGADLAIDYTK---DNFE---DLPEKFDVVYDAIG--QCDRAVKA 201 (280)
Q Consensus 151 -----------------~~~~s~~~~~----~l~~lga~~vid~~~---~~~~---~~~~g~DvV~d~~g--~~~~~l~~ 201 (280)
-++++..+.+ .|+.+||++||.-.. .... .....+.+.|||+| ......+.
T Consensus 173 VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~~~~k~~~~~~~prLalNcVGGksa~~iar~ 252 (354)
T KOG0025|consen 173 VGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEELRDRKMKKFKGDNPRPRLALNCVGGKSATEIARY 252 (354)
T ss_pred HHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHHHhcchhhhhhhccCCCceEEEeccCchhHHHHHHH
Confidence 3455544444 455699999985322 1111 12467899999998 57788999
Q ss_pred cccCCEEEEEcCCCC-CCceE-------------EEEee----------cHHHHHHHHHHHHCCCceeecCCCcccchhh
Q 023556 202 IKEGGTVVALTGAVT-PPGFR-------------FVVTS----------NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQ 257 (280)
Q Consensus 202 l~~gG~vV~~g~~~~-~~~~~-------------~~~~~----------~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~ 257 (280)
|..||.++.+|+-.. |..+. |++.. ..+.+.++.+|++.|+|+....+ ..+|++
T Consensus 253 L~~GgtmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~~e--~v~L~~ 330 (354)
T KOG0025|consen 253 LERGGTMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPNCE--KVPLAD 330 (354)
T ss_pred HhcCceEEEecCccCCCcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeeccccce--eeechh
Confidence 999999999998772 21111 11111 12667899999999999988775 789999
Q ss_pred HHHHHHHHHhCCCC-eeEEEEe
Q 023556 258 VVEAFSYIETNKAT-GKVVIHP 278 (280)
Q Consensus 258 v~~A~~~l~~~~~~-gkvVv~~ 278 (280)
...|++........ ||-++.+
T Consensus 331 ~~tald~~L~~~~~~~Kq~i~~ 352 (354)
T KOG0025|consen 331 HKTALDAALSKFGKSGKQIIVL 352 (354)
T ss_pred hhHHHHHHHHHhccCCceEEEe
Confidence 99999888766543 5655543
No 48
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.74 E-value=3.2e-16 Score=142.29 Aligned_cols=192 Identities=24% Similarity=0.363 Sum_probs=143.6
Q ss_pred eeEEEEcccCCC-ccEEEeeeccCCCCCC-CcEEEEEEEEecChHHHHHHcCCCCCCCC---CCCcccCceE--------
Q 023556 84 MKAWLYGEYGGV-DVLKFDEKVTVPQVKE-DQVLIKVVAAALNPVDGKRRQGKFKATDS---PLPTVPGYDV-------- 150 (280)
Q Consensus 84 mka~~~~~~g~~-~~l~l~~~~~~p~~~~-~eVlVkV~aagl~~~D~~~~~g~~~~~~~---~~P~i~G~e~-------- 150 (280)
|||+++...+.+ +.+.++ +.|.|.|.+ ++|+|+|.++|+|+.|++.+.|.++.... ..|.++|||+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~-~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG 79 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLE-SYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVG 79 (341)
T ss_pred CceEEEccCCCchhheEEe-ecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeC
Confidence 899999888765 468899 899999888 99999999999999999999887642111 1455677766
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 80 ~~v~~~~~Gd~V~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~v 159 (341)
T cd08290 80 SGVKSLKPGDWVIPLRPGLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAV 159 (341)
T ss_pred CCCCCCCCCCEEEecCCCCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHH
Confidence
Q ss_pred ----------------EEecCh----hhHHHHHhCCCCEEEeCCCC---CccccC-----CCccEEEeCCC--CHHHHHh
Q 023556 151 ----------------AATSST----RNLEFLKSLGADLAIDYTKD---NFEDLP-----EKFDVVYDAIG--QCDRAVK 200 (280)
Q Consensus 151 ----------------~~~~s~----~~~~~l~~lga~~vid~~~~---~~~~~~-----~g~DvV~d~~g--~~~~~l~ 200 (280)
+++.++ ++.++++++|++++++++.. ++...+ +++|++|||+| .+..+++
T Consensus 160 g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~~~~~~~~ 239 (341)
T cd08290 160 GQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAPGGRPKLALNCVGGKSATELAR 239 (341)
T ss_pred HHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHcCCCceEEEECcCcHhHHHHHH
Confidence 333333 56888888999999988764 443221 27999999998 5778999
Q ss_pred ccccCCEEEEEcCCCC-CC----------ceEEEEe--------e----cHHHHHHHHHHHHCCCceeecCCCccc---c
Q 023556 201 AIKEGGTVVALTGAVT-PP----------GFRFVVT--------S----NGEVLKKLNPYLESGKVKPIIDPKGPF---P 254 (280)
Q Consensus 201 ~l~~gG~vV~~g~~~~-~~----------~~~~~~~--------~----~~~~l~~l~~ll~~G~l~~~~~~~~~~---~ 254 (280)
+++++|+++.+|.... +. ...+... . ....++++++++++|.+++.... .+ +
T Consensus 240 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 317 (341)
T cd08290 240 LLSPGGTMVTYGGMSGQPVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAPPVE--KVTDDP 317 (341)
T ss_pred HhCCCCEEEEEeccCCCCcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCCccc--ccccCC
Confidence 9999999999985431 11 1111110 0 11357889999999999876443 56 9
Q ss_pred hhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 255 FSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 255 l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
++++.+|++.+.+++..||+|+++
T Consensus 318 ~~~~~~a~~~~~~~~~~~k~v~~~ 341 (341)
T cd08290 318 LEEFKDALANALKGGGGGKQVLVM 341 (341)
T ss_pred HHHHHHHHHHHhhcCCCCeEEEeC
Confidence 999999999999998889999864
No 49
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.73 E-value=3.3e-16 Score=145.78 Aligned_cols=127 Identities=24% Similarity=0.369 Sum_probs=96.4
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCC----------------------ccc----c--CCCccEEEeCCC--CHHHHHh
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDN----------------------FED----L--PEKFDVVYDAIG--QCDRAVK 200 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~----------------------~~~----~--~~g~DvV~d~~g--~~~~~l~ 200 (280)
+++.++++.++++++|++.++|+++.+ +.. . .+++|++|||+| .+..+++
T Consensus 219 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~~~~~~~ 298 (398)
T TIGR01751 219 AVVSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRATFPTSVF 298 (398)
T ss_pred EEcCCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHHHHHHHHH
Confidence 456778889999999999999986532 000 0 157999999998 5788999
Q ss_pred ccccCCEEEEEcCCCCC-Cce------------EEEEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHh
Q 023556 201 AIKEGGTVVALTGAVTP-PGF------------RFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIET 267 (280)
Q Consensus 201 ~l~~gG~vV~~g~~~~~-~~~------------~~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~ 267 (280)
+++++|+++.+|..... ..+ ........+.++++++++++|.+.+.+. ++++++++.++++.+..
T Consensus 299 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~l~~~~~a~~~~~~ 376 (398)
T TIGR01751 299 VCRRGGMVVICGGTTGYNHDYDNRYLWMRQKRIQGSHFANLREAWEANRLVAKGRIDPTLS--KVYPLEEIGQAHQDVHR 376 (398)
T ss_pred hhccCCEEEEEccccCCCCCcCHHHHhhcccEEEccccCcHHHHHHHHHHHHCCCccccee--eEEcHHHHHHHHHHHHc
Confidence 99999999999875421 111 0111112345788999999999986644 48999999999999999
Q ss_pred CCCCeeEEEEeC
Q 023556 268 NKATGKVVIHPI 279 (280)
Q Consensus 268 ~~~~gkvVv~~~ 279 (280)
++..||+|++++
T Consensus 377 ~~~~gkvvv~~~ 388 (398)
T TIGR01751 377 NHHQGNVAVLVL 388 (398)
T ss_pred CCCCceEEEEeC
Confidence 999999999874
No 50
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.73 E-value=2.7e-16 Score=142.73 Aligned_cols=124 Identities=27% Similarity=0.365 Sum_probs=95.0
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCccccC------CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCC-C---
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLP------EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVT-P--- 217 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~------~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~-~--- 217 (280)
+++.++++.++++++|++++++++.. +.+.+ +++|+++||+| .++.++++|+++|+++.+|.... .
T Consensus 197 ~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~ 275 (340)
T cd05284 197 AVDRSEEALKLAERLGADHVLNASDD-VVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGHGRLPT 275 (340)
T ss_pred EEeCCHHHHHHHHHhCCcEEEcCCcc-HHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCCCccCH
Confidence 45567788888888999999988765 43321 47999999998 37899999999999999975542 1
Q ss_pred -----CceEEE--EeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 218 -----PGFRFV--VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 218 -----~~~~~~--~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
....+. .....+.++.+++++++|.+++.+ +.|+++++++|++.+++++..||+|+.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~---~~~~~~~~~~a~~~~~~~~~~gkvv~~~ 340 (340)
T cd05284 276 SDLVPTEISVIGSLWGTRAELVEVVALAESGKVKVEI---TKFPLEDANEALDRLREGRVTGRAVLVP 340 (340)
T ss_pred HHhhhcceEEEEEecccHHHHHHHHHHHHhCCCCcce---EEEeHHHHHHHHHHHHcCCccceEEecC
Confidence 111111 122467889999999999988633 3799999999999999998889999753
No 51
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.72 E-value=4.4e-16 Score=142.16 Aligned_cols=125 Identities=22% Similarity=0.299 Sum_probs=95.4
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCcccc-----CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCce--
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDL-----PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGF-- 220 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~-----~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~-- 220 (280)
+++.++++.++++++|++.+++++...+.+. .+++|++||++| .+..++++|+++|++|.+|........
T Consensus 205 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~ 284 (350)
T cd08240 205 VVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGEATLPL 284 (350)
T ss_pred EEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCCCcccH
Confidence 3556778888888899988888876554332 137999999997 478999999999999999765422111
Q ss_pred --------EE--EEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 221 --------RF--VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 221 --------~~--~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
.+ ......+++.++++++++|.+++... ..|+++++.+|++.+.+++..||+|++
T Consensus 285 ~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~i~~~~~--~~~~~~~~~~a~~~~~~~~~~gkvvv~ 349 (350)
T cd08240 285 PLLPLRALTIQGSYVGSLEELRELVALAKAGKLKPIPL--TERPLSDVNDALDDLKAGKVVGRAVLK 349 (350)
T ss_pred HHHhhcCcEEEEcccCCHHHHHHHHHHHHcCCCcccee--eEEcHHHHHHHHHHHHcCCccceEEec
Confidence 11 11123478899999999999886544 489999999999999999888999875
No 52
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.72 E-value=7.5e-16 Score=140.27 Aligned_cols=122 Identities=27% Similarity=0.444 Sum_probs=89.6
Q ss_pred ChhhHHHHHhCCCCEEEeCCCCCccc----cCCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCCCC-Cce-------
Q 023556 155 STRNLEFLKSLGADLAIDYTKDNFED----LPEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVTP-PGF------- 220 (280)
Q Consensus 155 s~~~~~~l~~lga~~vid~~~~~~~~----~~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~~~-~~~------- 220 (280)
+.++++.++++|++.+++.....+.+ ..+++|++|||+| .+..++++++++|+++.+|..... ..+
T Consensus 210 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~ 289 (350)
T cd08274 210 GAAKEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGGPLFPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYL 289 (350)
T ss_pred CchhhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCHHHHHHHHHHhccCCEEEEecccCCccccCCHHHhhh
Confidence 33477788888887666554433321 1257999999998 578999999999999999854321 111
Q ss_pred ---E--EEEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 221 ---R--FVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 221 ---~--~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
. .......+.++++++++++|.+++.+. +.|+++++.+|++.+..++..+|+|+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~--~~~~~~~~~~a~~~~~~~~~~~kvvi~~ 350 (350)
T cd08274 290 KDLTLFGSTLGTREVFRRLVRYIEEGEIRPVVA--KTFPLSEIREAQAEFLEKRHVGKLVLVP 350 (350)
T ss_pred cceEEEEeecCCHHHHHHHHHHHHCCCcccccc--cccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence 1 111224678999999999999987544 5899999999999999888889999863
No 53
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.72 E-value=5.8e-16 Score=139.28 Aligned_cols=190 Identities=24% Similarity=0.313 Sum_probs=138.5
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
|||+++..+++++.++++ +.|.|.++++||+|+|.++|+|++|++.+.|.++. ...+|.++|||+
T Consensus 1 ~~a~~~~~~~~~~~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~~~~~~~ 78 (325)
T cd05280 1 FKALVVEEQDGGVSLFLR-TLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGV-TRNYPHTPGIDAAGTVVSSDDPRFR 78 (325)
T ss_pred CceEEEcccCCCCcceEE-eCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCC-CCCCCCccCcccEEEEEEeCCCCCC
Confidence 799999988876679999 99999999999999999999999999998876531 111222222222
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 ~Gd~V~~~~~~~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~ 158 (325)
T cd05280 79 EGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGG 158 (325)
T ss_pred CCCEEEEcccccCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccH
Confidence
Q ss_pred -----------------EEecChhhHHHHHhCCCCEEEeCCCCC--cccc--CCCccEEEeCCC--CHHHHHhccccCCE
Q 023556 151 -----------------AATSSTRNLEFLKSLGADLAIDYTKDN--FEDL--PEKFDVVYDAIG--QCDRAVKAIKEGGT 207 (280)
Q Consensus 151 -----------------~~~~s~~~~~~l~~lga~~vid~~~~~--~~~~--~~g~DvV~d~~g--~~~~~l~~l~~gG~ 207 (280)
+++.++++.++++++|+++++++.+.. .... .+++|+||||+| .+..++++++++|+
T Consensus 159 vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~ 238 (325)
T cd05280 159 VGSIAVAILAKLGYTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGGDVLANLLKQTKYGGV 238 (325)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCchHHHHHHHHhhcCCCE
Confidence 566778888999889999988876431 1111 257999999998 68999999999999
Q ss_pred EEEEcCCCCC---Cc---e-----EEE---Ee-----ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhC
Q 023556 208 VVALTGAVTP---PG---F-----RFV---VT-----SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETN 268 (280)
Q Consensus 208 vV~~g~~~~~---~~---~-----~~~---~~-----~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~ 268 (280)
+|.+|..... .. + .+. .. ...+.++.+.+++..+..+. +. ..|+++++++|++.+.++
T Consensus 239 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~a~~~~~~~ 315 (325)
T cd05280 239 VASCGNAAGPELTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWKPDLLEI-VV--REISLEELPEAIDRLLAG 315 (325)
T ss_pred EEEEecCCCCccccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHhcCCccc-ee--eEecHHHHHHHHHHHhcC
Confidence 9999865311 00 0 000 00 11244566666677774443 33 489999999999999999
Q ss_pred CCCeeEEEEe
Q 023556 269 KATGKVVIHP 278 (280)
Q Consensus 269 ~~~gkvVv~~ 278 (280)
+..||+|+++
T Consensus 316 ~~~gk~vv~~ 325 (325)
T cd05280 316 KHRGRTVVKI 325 (325)
T ss_pred CcceEEEEeC
Confidence 9889999864
No 54
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.72 E-value=6.8e-16 Score=140.25 Aligned_cols=125 Identities=26% Similarity=0.343 Sum_probs=97.0
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCC-ce
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP-GF 220 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~-~~ 220 (280)
+++.++++.++++++|++.++++++.++.+. .+++|++|||.+ .+..++++++++|+++.+|...... .+
T Consensus 195 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~ 274 (341)
T cd08297 195 AIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGGFIPL 274 (341)
T ss_pred EEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEecCCCCCCCCC
Confidence 5667788889998899999999887665432 257999999765 5789999999999999998654211 11
Q ss_pred ----------EEEEe--ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 221 ----------RFVVT--SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 221 ----------~~~~~--~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
.+... ...+.++.+++++++|.+++.+ ..|+++++.+|++.+..++..||+|+++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 341 (341)
T cd08297 275 DPFDLVLRGITIVGSLVGTRQDLQEALEFAARGKVKPHI---QVVPLEDLNEVFEKMEEGKIAGRVVVDF 341 (341)
T ss_pred CHHHHHhcccEEEEeccCCHHHHHHHHHHHHcCCCccee---EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence 11111 1268899999999999997643 3799999999999999998889999874
No 55
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.71 E-value=6.7e-16 Score=140.38 Aligned_cols=124 Identities=19% Similarity=0.272 Sum_probs=95.3
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCcccc-CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCce------
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDL-PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGF------ 220 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~-~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~------ 220 (280)
+++.++++.++++++|++.+++....++... .+++|++|||+| .+..++++++++|+++.+|.......+
T Consensus 198 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~ 277 (337)
T cd05283 198 AFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEPLPVPPFPLI 277 (337)
T ss_pred EEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcchHHHHHHHhcCCCEEEEEeccCCCCccCHHHHh
Confidence 4556667888888899988888776544332 368999999998 378999999999999999865422111
Q ss_pred ----EE--EEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 221 ----RF--VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 221 ----~~--~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
.+ ......+.++.+++++++|++++.+ +.|+++++++|++.+++++..||+|++
T Consensus 278 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~a~~~~~~~~~~~k~v~~ 337 (337)
T cd05283 278 FGRKSVAGSLIGGRKETQEMLDFAAEHGIKPWV---EVIPMDGINEALERLEKGDVRYRFVLD 337 (337)
T ss_pred cCceEEEEecccCHHHHHHHHHHHHhCCCccce---EEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence 11 1122457899999999999998653 379999999999999999999999874
No 56
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.71 E-value=8.9e-16 Score=139.02 Aligned_cols=189 Identities=23% Similarity=0.351 Sum_probs=139.7
Q ss_pred eEEEEccc---CCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-----------
Q 023556 85 KAWLYGEY---GGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV----------- 150 (280)
Q Consensus 85 ka~~~~~~---g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~----------- 150 (280)
||+++.++ ++++.+++. +.|.|.++++||+|||.++++|+.|++.+.|..+ ...+|.++|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~--~~~~~~~~g~e~~G~V~~vG~~v 77 (336)
T TIGR02817 1 KAVGYKKPLPITDPDALVDI-DLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAP--EAGQPKILGWDAAGVVVAVGDEV 77 (336)
T ss_pred CceeeccccCCCCcccceec-ccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCC--CCCCCcccceeeEEEEEEeCCCC
Confidence 57888887 777889999 8999999999999999999999999998877653 123344555555
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 78 ~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga 157 (336)
T TIGR02817 78 TLFKPGDEVWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGG 157 (336)
T ss_pred CCCCCCCEEEEcCCCCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcC
Confidence
Q ss_pred ---------------------EEecChhhHHHHHhCCCCEEEeCCCCCcccc-----CCCccEEEeCCC---CHHHHHhc
Q 023556 151 ---------------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL-----PEKFDVVYDAIG---QCDRAVKA 201 (280)
Q Consensus 151 ---------------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~-----~~g~DvV~d~~g---~~~~~l~~ 201 (280)
+++.++++.++++++|+++++++.. ++... .+++|+|+||+| .+..++++
T Consensus 158 ~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~~i~~~~~~~vd~vl~~~~~~~~~~~~~~~ 236 (336)
T TIGR02817 158 AGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHSK-PLKAQLEKLGLEAVSYVFSLTHTDQHFKEIVEL 236 (336)
T ss_pred CcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECCC-CHHHHHHHhcCCCCCEEEEcCCcHHHHHHHHHH
Confidence 4445677888888899999998654 33322 257999999974 57899999
Q ss_pred cccCCEEEEEcCCCCC-------CceEEE---Ee--e---------cHHHHHHHHHHHHCCCceeecCCC-cccchhhHH
Q 023556 202 IKEGGTVVALTGAVTP-------PGFRFV---VT--S---------NGEVLKKLNPYLESGKVKPIIDPK-GPFPFSQVV 259 (280)
Q Consensus 202 l~~gG~vV~~g~~~~~-------~~~~~~---~~--~---------~~~~l~~l~~ll~~G~l~~~~~~~-~~~~l~~v~ 259 (280)
++++|+++.++..... ....+. +. . ....++++++++++|.+++.+..+ ..++++++.
T Consensus 237 l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 316 (336)
T TIGR02817 237 LAPQGRFALIDDPAELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRTTLAETFGTINAANLK 316 (336)
T ss_pred hccCCEEEEEcccccccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHHCCCeeccchhccCCCCHHHHH
Confidence 9999999998643210 001111 11 0 015678899999999998754321 123579999
Q ss_pred HHHHHHHhCCCCeeEEEE
Q 023556 260 EAFSYIETNKATGKVVIH 277 (280)
Q Consensus 260 ~A~~~l~~~~~~gkvVv~ 277 (280)
+|++.+++++..||+|++
T Consensus 317 ~a~~~~~~~~~~gkvvv~ 334 (336)
T TIGR02817 317 RAHALIESGKARGKIVLE 334 (336)
T ss_pred HHHHHHHcCCccceEEEe
Confidence 999999999888998875
No 57
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.71 E-value=4e-16 Score=141.95 Aligned_cols=126 Identities=23% Similarity=0.392 Sum_probs=92.0
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCc--
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPG-- 219 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~-- 219 (280)
++..++++.++++++|+++++++++.++.+. .+++|+||||.| .+..++++|+++|+++.+|.......
T Consensus 193 ~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~ 272 (341)
T PRK05396 193 ITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPGDMAID 272 (341)
T ss_pred EEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCccc
Confidence 3445677888888999999999887665432 257999999987 47899999999999999986542111
Q ss_pred --------eEEEE---eecHHHHHHHHHHHHCC-CceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEeC
Q 023556 220 --------FRFVV---TSNGEVLKKLNPYLESG-KVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHPI 279 (280)
Q Consensus 220 --------~~~~~---~~~~~~l~~l~~ll~~G-~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~~ 279 (280)
..+.. ....+.+..+.+++++| ++.+.+. +.|+++++.+|++.+.+++ .||+|++++
T Consensus 273 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~a~~~~~~~~-~gk~vv~~~ 341 (341)
T PRK05396 273 WNKVIFKGLTIKGIYGREMFETWYKMSALLQSGLDLSPIIT--HRFPIDDFQKGFEAMRSGQ-SGKVILDWD 341 (341)
T ss_pred HHHHhhcceEEEEEEccCccchHHHHHHHHHcCCChhHheE--EEEeHHHHHHHHHHHhcCC-CceEEEecC
Confidence 11111 11234566788899998 3444333 4889999999999999887 799999864
No 58
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.70 E-value=1e-15 Score=142.17 Aligned_cols=125 Identities=21% Similarity=0.341 Sum_probs=94.1
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCC----------------------cccc------CC-CccEEEeCCC--CHHHHH
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDN----------------------FEDL------PE-KFDVVYDAIG--QCDRAV 199 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~----------------------~~~~------~~-g~DvV~d~~g--~~~~~l 199 (280)
+++.++++.++++++|++++++++..+ +.+. .+ ++|++|||+| .+..++
T Consensus 223 ~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~~~~~~~ 302 (393)
T cd08246 223 AVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRATFPTSV 302 (393)
T ss_pred EEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchHhHHHHH
Confidence 566788899999999999999975431 1111 13 7999999998 578999
Q ss_pred hccccCCEEEEEcCCCC-CCceEE------------EEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHH
Q 023556 200 KAIKEGGTVVALTGAVT-PPGFRF------------VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIE 266 (280)
Q Consensus 200 ~~l~~gG~vV~~g~~~~-~~~~~~------------~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~ 266 (280)
++++++|++|.+|.... ...+.. ......+.+.++++++++|.+.+.+. +.|+++++++|++.+.
T Consensus 303 ~~l~~~G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~l~~~~~a~~~~~ 380 (393)
T cd08246 303 FVCDRGGMVVICAGTTGYNHTYDNRYLWMRQKRIQGSHFANDREAAEANRLVMKGRIDPCLS--KVFSLDETPDAHQLMH 380 (393)
T ss_pred HHhccCCEEEEEcccCCCCCCCcHHHHhhheeEEEecccCcHHHHHHHHHHHHcCCceeeee--EEEeHHHHHHHHHHHH
Confidence 99999999999986432 111110 01112358889999999999986543 5899999999999999
Q ss_pred hC-CCCeeEEEE
Q 023556 267 TN-KATGKVVIH 277 (280)
Q Consensus 267 ~~-~~~gkvVv~ 277 (280)
++ +..||+|+-
T Consensus 381 ~~~~~~gkvvv~ 392 (393)
T cd08246 381 RNQHHVGNMAVL 392 (393)
T ss_pred hCccccceEEEe
Confidence 98 788998874
No 59
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.70 E-value=2.5e-15 Score=135.48 Aligned_cols=191 Identities=31% Similarity=0.467 Sum_probs=143.4
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
|||+++...+..+.+++. +.+.|.++++||+|++.++|+|+.|++...|.++. ....|.++|||+
T Consensus 1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~G~~~~~ 78 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLV-EEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPP-PVKDPLIPLSDGAGEVVAVGEGVTR 78 (336)
T ss_pred CeEEEEeccCCCcceEEE-eccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCC-CCCCCcccccceeEEEEEeCCCCcC
Confidence 899999877666678888 88888899999999999999999999988776531 111111111111
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~ 158 (336)
T cd08276 79 FKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPL 158 (336)
T ss_pred CCCCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCC
Confidence
Q ss_pred ------------------------------EEecChhhHHHHHhCCCCEEEeCCC-CCcccc------CCCccEEEeCCC
Q 023556 151 ------------------------------AATSSTRNLEFLKSLGADLAIDYTK-DNFEDL------PEKFDVVYDAIG 193 (280)
Q Consensus 151 ------------------------------~~~~s~~~~~~l~~lga~~vid~~~-~~~~~~------~~g~DvV~d~~g 193 (280)
+++.++++.++++++|++.++++.. .++.+. .+++|+++||+|
T Consensus 159 ~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 238 (336)
T cd08276 159 KPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAKALGADHVINYRTTPDWGEEVLKLTGGRGVDHVVEVGG 238 (336)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEcCCcccCHHHHHHHHcCCCCCcEEEECCC
Confidence 5556677888888889999988776 444332 158999999988
Q ss_pred --CHHHHHhccccCCEEEEEcCCCCCC-----------ceEEE--EeecHHHHHHHHHHHHCCCceeecCCCcccchhhH
Q 023556 194 --QCDRAVKAIKEGGTVVALTGAVTPP-----------GFRFV--VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQV 258 (280)
Q Consensus 194 --~~~~~l~~l~~gG~vV~~g~~~~~~-----------~~~~~--~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v 258 (280)
.+..++++++++|+++.+|...... .+.+. .....+.++++.++++++.+.+... ..|+++++
T Consensus 239 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~--~~~~~~~~ 316 (336)
T cd08276 239 PGTLAQSIKAVAPGGVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVGSRAQFEAMNRAIEAHRIRPVID--RVFPFEEA 316 (336)
T ss_pred hHHHHHHHHhhcCCCEEEEEccCCCCccCcCHHHHhhcceEEEEEecCcHHHHHHHHHHHHcCCcccccC--cEEeHHHH
Confidence 5789999999999999998654211 11111 1123678899999999998876543 48999999
Q ss_pred HHHHHHHHhCCCCeeEEEEe
Q 023556 259 VEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 259 ~~A~~~l~~~~~~gkvVv~~ 278 (280)
.++++.+.+++..+|+|+++
T Consensus 317 ~~a~~~~~~~~~~~kvv~~~ 336 (336)
T cd08276 317 KEAYRYLESGSHFGKVVIRV 336 (336)
T ss_pred HHHHHHHHhCCCCceEEEeC
Confidence 99999999988889999864
No 60
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.70 E-value=3.6e-15 Score=133.04 Aligned_cols=182 Identities=26% Similarity=0.334 Sum_probs=137.7
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
||++++.+.+ +..+++. +.+.|.++++||+|+|.++|+|+.|++...+.. .|.++|+|+
T Consensus 1 ~~~~~~~~~~-~~~~~~~-~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~~------~~~~~g~e~~G~v~~~G~~v~~ 72 (305)
T cd08270 1 MRALVVDPDA-PLRLRLG-EVPDPQPAPHEALVRVAAISLNRGELKFAAERP------DGAVPGWDAAGVVERAAADGSG 72 (305)
T ss_pred CeEEEEccCC-CceeEEE-ecCCCCCCCCEEEEEEEEEecCHHHHHhhccCC------CCCcccceeEEEEEEeCCCCCC
Confidence 7899987755 6778999 899999999999999999999999998765221 123444444
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 73 ~~~Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~ 152 (305)
T cd08270 73 PAVGARVVGLGAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPLLGRRVLVTGASGGVGRFAVQL 152 (305)
T ss_pred CCCCCEEEEecCCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHH
Confidence
Q ss_pred ---------EEecChhhHHHHHhCCCCEEEeCCCCCccccCCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCCCC-C
Q 023556 151 ---------AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVTP-P 218 (280)
Q Consensus 151 ---------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~~~-~ 218 (280)
+++.++++.++++++|++.+++... ++.. +++|+++||+| .+..++++++.+|++|.+|..... .
T Consensus 153 a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~--~~~d~vl~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~ 229 (305)
T cd08270 153 AALAGAHVVAVVGSPARAEGLRELGAAEVVVGGS-ELSG--APVDLVVDSVGGPQLARALELLAPGGTVVSVGSSSGEPA 229 (305)
T ss_pred HHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccc-cccC--CCceEEEECCCcHHHHHHHHHhcCCCEEEEEeccCCCcc
Confidence 4556778888898899877664332 2211 57999999998 578999999999999999864311 0
Q ss_pred ------------ceEE---EEe---ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 219 ------------GFRF---VVT---SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 219 ------------~~~~---~~~---~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
...+ .+. ...+.++.+++++++|++++.+. +.++++++.+|++.+.+++..||+|+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~a~~~~~~~~~~gkvvi~~ 305 (305)
T cd08270 230 VFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARLLGLVAAGRLDPRIG--WRGSWTEIDEAAEALLARRFRGKAVLDV 305 (305)
T ss_pred cccHHHHhcccccceEEEEEccCHHHHHHHHHHHHHHHHCCCccceec--cEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence 1111 111 12467889999999999987644 4899999999999999998889999864
No 61
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=99.70 E-value=1.1e-15 Score=140.21 Aligned_cols=127 Identities=24% Similarity=0.324 Sum_probs=91.8
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCccc-------c--CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCC-
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFED-------L--PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTP- 217 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~-------~--~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~- 217 (280)
+++.++++.++++++|++.+++++..++.+ . .+++|++|||+| .+..++++++++|+++.+|.....
T Consensus 207 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~ 286 (361)
T cd08231 207 VIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAG 286 (361)
T ss_pred EEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCCC
Confidence 455678888999999999999887654321 1 257999999997 378999999999999999865421
Q ss_pred -C----------ceEE--EEeecHHHHHHHHHHHHCC--CceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 218 -P----------GFRF--VVTSNGEVLKKLNPYLESG--KVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 218 -~----------~~~~--~~~~~~~~l~~l~~ll~~G--~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
. .+.+ ......+.++++++++.++ .++.....+++|+++++++|++.+++++. +|+||++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~~-~k~vi~~ 361 (361)
T cd08231 287 TVPLDPERIVRKNLTIIGVHNYDPSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGTA-LKVVIDP 361 (361)
T ss_pred ccccCHHHHhhcccEEEEcccCCchhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCCc-eEEEeCC
Confidence 1 1111 1112356788899999887 44332222358999999999999988774 8999853
No 62
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.70 E-value=9.4e-16 Score=138.18 Aligned_cols=191 Identities=21% Similarity=0.280 Sum_probs=133.2
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
|||+++...|+++.+.++ +.+.|.++++||+|++.++|+|+.|.+...+... ....+|.++|||+
T Consensus 1 ~~a~~~~~~~~~~~~~~~-~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~-~~~~~~~~~g~e~~G~V~~~~~~~~~ 78 (326)
T cd08289 1 FQALVVEKDEDDVSVSVK-NLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGK-IVKRYPFIPGIDLAGTVVESNDPRFK 78 (326)
T ss_pred CeeEEEeccCCcceeEEE-EccCCCCCCCeEEEEEEEEecChHHhhhhcCCcc-ccCCCCcCcccceeEEEEEcCCCCCC
Confidence 899999988877778899 9999999999999999999999999876642110 0112234444444
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 ~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~ 158 (326)
T cd08289 79 PGDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGG 158 (326)
T ss_pred CCCEEEEcccccCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCch
Confidence
Q ss_pred -----------------EEecChhhHHHHHhCCCCEEEeCCCCCcc---cc-CCCccEEEeCCC--CHHHHHhccccCCE
Q 023556 151 -----------------AATSSTRNLEFLKSLGADLAIDYTKDNFE---DL-PEKFDVVYDAIG--QCDRAVKAIKEGGT 207 (280)
Q Consensus 151 -----------------~~~~s~~~~~~l~~lga~~vid~~~~~~~---~~-~~g~DvV~d~~g--~~~~~l~~l~~gG~ 207 (280)
+++.++++.++++++|++.++++++.... .. .+++|+||||+| .+..++++++++|+
T Consensus 159 vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~ 238 (326)
T cd08289 159 VGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGGKTLAYLLSTLQYGGS 238 (326)
T ss_pred HHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcHHHHHHHHHHhhcCCE
Confidence 45677888999999999999887653211 11 257999999998 57899999999999
Q ss_pred EEEEcCCCC-CCc----------eEEEE---ee-----cHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhC
Q 023556 208 VVALTGAVT-PPG----------FRFVV---TS-----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETN 268 (280)
Q Consensus 208 vV~~g~~~~-~~~----------~~~~~---~~-----~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~ 268 (280)
++.+|.... ... ..+.. .. ..+.++.+.+.+..+.+...+ ++.|+++++.+|++.+.++
T Consensus 239 ~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~a~~~~~~~ 316 (326)
T cd08289 239 VAVSGLTGGGEVETTVFPFILRGVNLLGIDSVECPMELRRRIWRRLATDLKPTQLLNEI--KQEITLDELPEALKQILQG 316 (326)
T ss_pred EEEEeecCCCCCCcchhhhhhccceEEEEEeEecCchHHHHHHHHHHhhcCcccccccc--ceEeeHHHHHHHHHHHhcC
Confidence 999986531 111 01100 00 122333343333322222223 3589999999999999999
Q ss_pred CCCeeEEEEe
Q 023556 269 KATGKVVIHP 278 (280)
Q Consensus 269 ~~~gkvVv~~ 278 (280)
+..||+|+++
T Consensus 317 ~~~gkvvv~~ 326 (326)
T cd08289 317 RVTGRTVVKL 326 (326)
T ss_pred cccceEEEeC
Confidence 9989999874
No 63
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.70 E-value=2.6e-15 Score=135.21 Aligned_cols=189 Identities=24% Similarity=0.324 Sum_probs=138.8
Q ss_pred eEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE--------------
Q 023556 85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV-------------- 150 (280)
Q Consensus 85 ka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~-------------- 150 (280)
||+++...+.++.++++ +.|.|.++++||+|+|.++++|+.|++...|.++. ....|.++|||+
T Consensus 1 ~a~~~~~~~~~~~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~V~~~~~~~~~~ 78 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVE-TLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGV-VRSYPMIPGIDAAGTVVSSEDPRFRE 78 (323)
T ss_pred CeEEEccCCCCcceeEe-ecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCC-CCCCCccceeeeEEEEEecCCCCCCC
Confidence 67888888877789999 99999999999999999999999999988886521 111233333332
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~v 158 (323)
T TIGR02823 79 GDEVIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGV 158 (323)
T ss_pred CCEEEEccCCCCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHH
Confidence
Q ss_pred ----------------EEecChhhHHHHHhCCCCEEEeCCCCCcc--cc-CCCccEEEeCCC--CHHHHHhccccCCEEE
Q 023556 151 ----------------AATSSTRNLEFLKSLGADLAIDYTKDNFE--DL-PEKFDVVYDAIG--QCDRAVKAIKEGGTVV 209 (280)
Q Consensus 151 ----------------~~~~s~~~~~~l~~lga~~vid~~~~~~~--~~-~~g~DvV~d~~g--~~~~~l~~l~~gG~vV 209 (280)
+++.++++.++++++|++.+++..+.+.. .. .+++|+++||+| .+..++++++++|++|
T Consensus 159 g~~~~~la~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~l~~~G~~v 238 (323)
T TIGR02823 159 GSLAVAILSKLGYEVVASTGKAEEEDYLKELGASEVIDREDLSPPGKPLEKERWAGAVDTVGGHTLANVLAQLKYGGAVA 238 (323)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcEEEccccHHHHHHHhcCCCceEEEECccHHHHHHHHHHhCCCCEEE
Confidence 45567777788888888888877543321 11 136999999998 6889999999999999
Q ss_pred EEcCCCC-CC----------ceEEEE---e-----ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCC
Q 023556 210 ALTGAVT-PP----------GFRFVV---T-----SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKA 270 (280)
Q Consensus 210 ~~g~~~~-~~----------~~~~~~---~-----~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~ 270 (280)
.+|.... .. ...+.. . ...+.++.+.+++..|.++.. . +.|+++++++|++.+.+++.
T Consensus 239 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~~~~~a~~~~~~~~~ 315 (323)
T TIGR02823 239 ACGLAGGPDLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLKPRNLESI-T--REITLEELPEALEQILAGQH 315 (323)
T ss_pred EEcccCCCCccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhhcCCCcCc-e--eeecHHHHHHHHHHHhCCCc
Confidence 9986431 11 111110 0 112456777778888887654 2 48999999999999999998
Q ss_pred CeeEEEEe
Q 023556 271 TGKVVIHP 278 (280)
Q Consensus 271 ~gkvVv~~ 278 (280)
.||+|+++
T Consensus 316 ~~k~vv~~ 323 (323)
T TIGR02823 316 RGRTVVDV 323 (323)
T ss_pred cceEEEeC
Confidence 89999864
No 64
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.69 E-value=8.3e-16 Score=139.20 Aligned_cols=185 Identities=23% Similarity=0.395 Sum_probs=135.2
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
|||+++..++++ ++++ +.|.|.+.+|||+|++.++++|+.|++...|.++. ..+|.++|+|+
T Consensus 1 m~a~~~~~~~~~--~~~~-~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~v~~~g~~~~~ 75 (334)
T PRK13771 1 MKAVILPGFKQG--YRIE-EVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPR--MKYPVILGHEVVGTVEEVGENVKG 75 (334)
T ss_pred CeeEEEcCCCCC--cEEE-eCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCC--CCCCeeccccceEEEEEeCCCCcc
Confidence 789999887764 8888 89999999999999999999999999988775531 11122222222
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 76 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~ 155 (334)
T PRK13771 76 FKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGL 155 (334)
T ss_pred CCCCCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHH
Confidence
Q ss_pred ------------------------------------EEecChhhHHHHHhCCCCEEEeCCCCCcccc---CCCccEEEeC
Q 023556 151 ------------------------------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL---PEKFDVVYDA 191 (280)
Q Consensus 151 ------------------------------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~---~~g~DvV~d~ 191 (280)
+++.++++.++++++ ++++++++ ++.+. .+++|++|||
T Consensus 156 ~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~v~~~~~~d~~ld~ 232 (334)
T PRK13771 156 RRAGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGS--KFSEEVKKIGGADIVIET 232 (334)
T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCch--hHHHHHHhcCCCcEEEEc
Confidence 344555666666666 55555554 22111 1479999999
Q ss_pred CC--CHHHHHhccccCCEEEEEcCCCCCCc------------eEE--EEeecHHHHHHHHHHHHCCCceeecCCCcccch
Q 023556 192 IG--QCDRAVKAIKEGGTVVALTGAVTPPG------------FRF--VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPF 255 (280)
Q Consensus 192 ~g--~~~~~l~~l~~gG~vV~~g~~~~~~~------------~~~--~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l 255 (280)
+| .+..++++|+++|+++.+|....... ..+ .....++.++++++++++|.++..+. +.|++
T Consensus 233 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~ 310 (334)
T PRK13771 233 VGTPTLEESLRSLNMGGKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHISATKRDVEEALKLVAEGKIKPVIG--AEVSL 310 (334)
T ss_pred CChHHHHHHHHHHhcCCEEEEEeccCCCCCcccCHHHHHhcccEEEEecCCCHHHHHHHHHHHHcCCCcceEe--eeEcH
Confidence 98 57899999999999999986532111 111 12234788999999999999986544 48999
Q ss_pred hhHHHHHHHHHhCCCCeeEEEEe
Q 023556 256 SQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 256 ~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
+++.+|++.++.++..||+|+.+
T Consensus 311 ~~~~~a~~~~~~~~~~~kvv~~~ 333 (334)
T PRK13771 311 SEIDKALEELKDKSRIGKILVKP 333 (334)
T ss_pred HHHHHHHHHHHcCCCcceEEEec
Confidence 99999999999988889999864
No 65
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.69 E-value=3.8e-15 Score=134.70 Aligned_cols=190 Identities=27% Similarity=0.360 Sum_probs=142.9
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCC-------------------C-----
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-------------------D----- 139 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~-------------------~----- 139 (280)
||++++..++++. +.+. +.+.|.+++++|+|+|.++++|+.|++...|.++.. .
T Consensus 1 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~ 78 (338)
T cd08254 1 MKAWRFHKGSKGL-LVLE-EVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNF 78 (338)
T ss_pred CeeEEEecCCCCc-eEEe-ccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccC
Confidence 7999998888765 7778 889999999999999999999999999987765300 0
Q ss_pred -CCCCcc------cC-----------------------ceE---------------------------------------
Q 023556 140 -SPLPTV------PG-----------------------YDV--------------------------------------- 150 (280)
Q Consensus 140 -~~~P~i------~G-----------------------~e~--------------------------------------- 150 (280)
.....+ .| .+.
T Consensus 79 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l~ 158 (338)
T cd08254 79 KVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVV 158 (338)
T ss_pred CCCCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHH
Confidence 000001 01 011
Q ss_pred -----------------------------------EEecChhhHHHHHhCCCCEEEeCCCCCccc-----cCCCccEEEe
Q 023556 151 -----------------------------------AATSSTRNLEFLKSLGADLAIDYTKDNFED-----LPEKFDVVYD 190 (280)
Q Consensus 151 -----------------------------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~-----~~~g~DvV~d 190 (280)
+++.++++.++++++|+++++++.+..+.+ ..+++|+++|
T Consensus 159 ~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid 238 (338)
T cd08254 159 RAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFD 238 (338)
T ss_pred hccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEE
Confidence 555678888889889999988877655432 1257999999
Q ss_pred CCC---CHHHHHhccccCCEEEEEcCCCCCCceE------------EEEeecHHHHHHHHHHHHCCCceeecCCCcccch
Q 023556 191 AIG---QCDRAVKAIKEGGTVVALTGAVTPPGFR------------FVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPF 255 (280)
Q Consensus 191 ~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~~------------~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l 255 (280)
|+| .+..++++|+++|+++.+|.......+. .......+.++.+++++++|.+++. . +.+++
T Consensus 239 ~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-~--~~~~~ 315 (338)
T cd08254 239 FVGTQPTFEDAQKAVKPGGRIVVVGLGRDKLTVDLSDLIARELRIIGSFGGTPEDLPEVLDLIAKGKLDPQ-V--ETRPL 315 (338)
T ss_pred CCCCHHHHHHHHHHhhcCCEEEEECCCCCCCccCHHHHhhCccEEEEeccCCHHHHHHHHHHHHcCCCccc-c--eeEcH
Confidence 997 4789999999999999997644221111 1112236789999999999999875 2 48999
Q ss_pred hhHHHHHHHHHhCCCCeeEEEEe
Q 023556 256 SQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 256 ~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
+++.++++.+.+++..||+|+++
T Consensus 316 ~~~~~a~~~~~~~~~~~kvv~~~ 338 (338)
T cd08254 316 DEIPEVLERLHKGKVKGRVVLVP 338 (338)
T ss_pred HHHHHHHHHHHcCCccceEEEeC
Confidence 99999999999999899999864
No 66
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.69 E-value=2.3e-15 Score=134.67 Aligned_cols=187 Identities=30% Similarity=0.442 Sum_probs=141.0
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
||++.+...+....+++. +.+.|.+.++||+|+|+++++|+.|++...|.++ ....|.++|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~~g~e~~G~v~~vG~~~~~ 77 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLR-EIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSP--SVKFPRVLGIEAVGEVEEAPGGTFT 77 (320)
T ss_pred CeEEEEcCCCCccceEEe-ecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCC--CCCCCccccceeEEEEEEecCCCCC
Confidence 789999877766678888 8888889999999999999999999999887653 122344444444
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 78 ~Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~ 157 (320)
T cd08243 78 PGQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGL 157 (320)
T ss_pred CCCEEEEecCCCCCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHH
Confidence
Q ss_pred --------------EEecChhhHHHHHhCCCCEEEeCCCCCccc----cCCCccEEEeCCC--CHHHHHhccccCCEEEE
Q 023556 151 --------------AATSSTRNLEFLKSLGADLAIDYTKDNFED----LPEKFDVVYDAIG--QCDRAVKAIKEGGTVVA 210 (280)
Q Consensus 151 --------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~----~~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~ 210 (280)
+++.++++.++++++|++++++. ..++.+ ..+++|+++||+| .+..++++++++|+++.
T Consensus 158 ~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~i~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~ 236 (320)
T cd08243 158 AALKLAKALGATVTATTRSPERAALLKELGADEVVID-DGAIAEQLRAAPGGFDKVLELVGTATLKDSLRHLRPGGIVCM 236 (320)
T ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEec-CccHHHHHHHhCCCceEEEECCChHHHHHHHHHhccCCEEEE
Confidence 56677888999999999888754 333322 1368999999998 57899999999999999
Q ss_pred EcCCCCC---------------CceEEEE----eecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCC
Q 023556 211 LTGAVTP---------------PGFRFVV----TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKAT 271 (280)
Q Consensus 211 ~g~~~~~---------------~~~~~~~----~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~ 271 (280)
+|..... ....+.. ......++++.+++++|.+++... +.|+++++.+|++.+.+++..
T Consensus 237 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~a~~~~~~~~~~ 314 (320)
T cd08243 237 TGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGDVPQTPLQELFDFVAAGHLDIPPS--KVFTFDEIVEAHAYMESNRAF 314 (320)
T ss_pred EccCCCCcccCCcchhhhhhhccceEEEecchhhhhHHHHHHHHHHHHCCceecccc--cEEcHHHHHHHHHHHHhCCCC
Confidence 9863211 0011110 012356888999999999987533 589999999999999998888
Q ss_pred eeEEE
Q 023556 272 GKVVI 276 (280)
Q Consensus 272 gkvVv 276 (280)
+|+|+
T Consensus 315 ~kvvv 319 (320)
T cd08243 315 GKVVV 319 (320)
T ss_pred CcEEe
Confidence 89886
No 67
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.69 E-value=7e-16 Score=140.90 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=93.6
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCceE
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGFR 221 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~~ 221 (280)
+++.++++.+.++++|++.+++++..++.+. .+++|++|||+| .+..++++++++|+++.+|.......+.
T Consensus 204 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~ 283 (350)
T cd08256 204 VLDLKDERLALARKFGADVVLNPPEVDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGDPVTVD 283 (350)
T ss_pred EEcCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCCCCccC
Confidence 3445677788888899999988876555432 247999999988 3688999999999999998654322111
Q ss_pred EEE------------eecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 023556 222 FVV------------TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 276 (280)
Q Consensus 222 ~~~------------~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv 276 (280)
+.. ......++++++++++|.+++....++.|+++++.+|++.+++++..+|+|+
T Consensus 284 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~ 350 (350)
T cd08256 284 WSIIGDRKELDVLGSHLGPYCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL 350 (350)
T ss_pred hhHhhcccccEEEEeccCchhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence 100 1123568899999999999874212358999999999999999988899875
No 68
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.69 E-value=2.2e-15 Score=136.97 Aligned_cols=127 Identities=19% Similarity=0.269 Sum_probs=95.3
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCccc---------cCCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCC
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFED---------LPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP 218 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~---------~~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~ 218 (280)
++..++++.++++++|++++++++..+..+ ..+++|+++||+| .+..++++++++|+++.+|......
T Consensus 191 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~ 270 (341)
T cd08262 191 ASDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMESD 270 (341)
T ss_pred EECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCC
Confidence 344567888888999999999987653211 1257999999987 3688999999999999998653111
Q ss_pred ------------ceEEEEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 219 ------------GFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 219 ------------~~~~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
.+.+......+.++++++++++|.+.+....++.|+++++++|++.+++++..||+|++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~ 341 (341)
T cd08262 271 NIEPALAIRKELTLQFSLGYTPEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD 341 (341)
T ss_pred ccCHHHHhhcceEEEEEecccHHHHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence 11122233456889999999999998643223589999999999999999988999974
No 69
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.68 E-value=1.5e-15 Score=136.69 Aligned_cols=187 Identities=21% Similarity=0.284 Sum_probs=132.5
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCC-C--CCC--------Cc--------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-D--SPL--------PT-------- 144 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~-~--~~~--------P~-------- 144 (280)
|||+++.+++ .++++ +.+.|+++++||+|+|.++++|+.|+++..|.++.. . ... +.
T Consensus 1 ~~a~~~~~~~---~~~~~-~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~~~~~~G~e~~G~Vv~~G~~~~~G~~V~ 76 (319)
T cd08242 1 MKALVLDGGL---DLRVE-DLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYPFPGVPGHEFVGIVEEGPEAELVGKRVV 76 (319)
T ss_pred CeeEEEeCCC---cEEEE-ECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCCCCCccCceEEEEEEEeCCCCCCCCeEE
Confidence 7899997643 48999 999999999999999999999999999988765310 0 000 00
Q ss_pred -------------------------ccC---ceE----------------------------------------------
Q 023556 145 -------------------------VPG---YDV---------------------------------------------- 150 (280)
Q Consensus 145 -------------------------i~G---~e~---------------------------------------------- 150 (280)
+.| +.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~~~~~~~~~~~~~g 156 (319)
T cd08242 77 GEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFAEPLAAALEILEQVPITPG 156 (319)
T ss_pred ECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhhhHHHHHHHHHHhcCCCCC
Confidence 000 011
Q ss_pred ---------------------------EEecChhhHHHHHhCCCCEEEeCCCCCccccCCCccEEEeCCC---CHHHHHh
Q 023556 151 ---------------------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG---QCDRAVK 200 (280)
Q Consensus 151 ---------------------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~~g~DvV~d~~g---~~~~~l~ 200 (280)
+++.++++.++++++|++.++++.+. ...+++|++|||+| .+..+++
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~d~vid~~g~~~~~~~~~~ 233 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAE---SEGGGFDVVVEATGSPSGLELALR 233 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCcccc---ccCCCCCEEEECCCChHHHHHHHH
Confidence 45567788888888999888877543 12357999999997 3789999
Q ss_pred ccccCCEEEEEcCCCCCCceEE--------EE-eecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCC
Q 023556 201 AIKEGGTVVALTGAVTPPGFRF--------VV-TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKAT 271 (280)
Q Consensus 201 ~l~~gG~vV~~g~~~~~~~~~~--------~~-~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~ 271 (280)
+++++|+++..+.......+.+ .+ ......++++++++++|.++.....++.|+++++++|++.++++. .
T Consensus 234 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~ 312 (319)
T cd08242 234 LVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVGSRCGPFAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPG-A 312 (319)
T ss_pred HhhcCCEEEEEcccCCCCccCHHHheecceEEEEEecccHHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCC-c
Confidence 9999999998765432211110 00 111124888999999999953222335899999999999999765 5
Q ss_pred eeEEEEe
Q 023556 272 GKVVIHP 278 (280)
Q Consensus 272 gkvVv~~ 278 (280)
+|+||++
T Consensus 313 ~k~vi~~ 319 (319)
T cd08242 313 LKVLLRP 319 (319)
T ss_pred eEEEeCC
Confidence 8998863
No 70
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.68 E-value=1.6e-15 Score=138.08 Aligned_cols=188 Identities=31% Similarity=0.423 Sum_probs=138.1
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCce--------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYD-------------- 149 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e-------------- 149 (280)
|||+++..+| +..++++ +.+.|.++++||+|+|.++|+|+.|++...+.++ ...|.++|+|
T Consensus 1 m~a~~~~~~~-~~~~~~~-~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~---~~~~~~~g~e~~G~v~~vG~~v~~ 75 (339)
T cd08249 1 QKAAVLTGPG-GGLLVVV-DVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI---PSYPAILGCDFAGTVVEVGSGVTR 75 (339)
T ss_pred CceEEeccCC-CCccccc-CCCCCCCCCCEEEEEEEEEEcCchheeeeecccc---cCCCceeeeeeeEEEEEeCCCcCc
Confidence 7899998887 6668999 9999999999999999999999999876633210 0000001110
Q ss_pred --------------------------------------------------------------------------------
Q 023556 150 -------------------------------------------------------------------------------- 149 (280)
Q Consensus 150 -------------------------------------------------------------------------------- 149 (280)
T Consensus 76 ~~~Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~ 155 (339)
T cd08249 76 FKVGDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKG 155 (339)
T ss_pred CCCCCEEEEEeccccCCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCC
Confidence
Q ss_pred --E------------------------EEecChhhHHHHHhCCCCEEEeCCCCCcccc-----CCCccEEEeCCC---CH
Q 023556 150 --V------------------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL-----PEKFDVVYDAIG---QC 195 (280)
Q Consensus 150 --~------------------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~-----~~g~DvV~d~~g---~~ 195 (280)
+ +.+.++++.++++++|+++++++.+.++.+. .+++|+|||++| .+
T Consensus 156 ~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~d~vl~~~g~~~~~ 235 (339)
T cd08249 156 KPVLIWGGSSSVGTLAIQLAKLAGYKVITTASPKNFDLVKSLGADAVFDYHDPDVVEDIRAATGGKLRYALDCISTPESA 235 (339)
T ss_pred CEEEEEcChhHHHHHHHHHHHHcCCeEEEEECcccHHHHHhcCCCEEEECCCchHHHHHHHhcCCCeeEEEEeeccchHH
Confidence 1 2223567888888899999999887665432 267999999987 47
Q ss_pred HHHHhcccc--CCEEEEEcCCCCCC----ceEE------EE--------eecHHHHHHHHHHHHCCCceeecCCCcccc-
Q 023556 196 DRAVKAIKE--GGTVVALTGAVTPP----GFRF------VV--------TSNGEVLKKLNPYLESGKVKPIIDPKGPFP- 254 (280)
Q Consensus 196 ~~~l~~l~~--gG~vV~~g~~~~~~----~~~~------~~--------~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~- 254 (280)
..+++++++ +|++|.+|...... .... .+ ......++++.+++++|.+.+.... .++
T Consensus 236 ~~~~~~l~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~ 313 (339)
T cd08249 236 QLCAEALGRSGGGKLVSLLPVPEETEPRKGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPHPVR--VVEG 313 (339)
T ss_pred HHHHHHHhccCCCEEEEecCCCccccCCCCceEEEEEeeeecccccccccchHHHHHHHHHHHHcCCccCCCce--ecCC
Confidence 899999999 99999998654211 1110 00 1123567889999999999876443 566
Q ss_pred -hhhHHHHHHHHHhCC-CCeeEEEEe
Q 023556 255 -FSQVVEAFSYIETNK-ATGKVVIHP 278 (280)
Q Consensus 255 -l~~v~~A~~~l~~~~-~~gkvVv~~ 278 (280)
++++.+|++.+.+++ ..+|+|+++
T Consensus 314 ~~~~~~~a~~~~~~~~~~~~kvvv~~ 339 (339)
T cd08249 314 GLEGVQEGLDLLRKGKVSGEKLVVRL 339 (339)
T ss_pred cHHHHHHHHHHHHCCCccceEEEEeC
Confidence 999999999999998 889999874
No 71
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.68 E-value=3.3e-15 Score=136.07 Aligned_cols=191 Identities=40% Similarity=0.691 Sum_probs=136.5
Q ss_pred eeEEEEcccCCC-ccEEEeeeccCCCC-CCCcEEEEEEEEecChHHHHHHcCCCCC-------------CCCCCCcccCc
Q 023556 84 MKAWLYGEYGGV-DVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKA-------------TDSPLPTVPGY 148 (280)
Q Consensus 84 mka~~~~~~g~~-~~l~l~~~~~~p~~-~~~eVlVkV~aagl~~~D~~~~~g~~~~-------------~~~~~P~i~G~ 148 (280)
|||+++.++|++ +.++++ +.+.|.| +++||+|+|.++++|+.|+++..|.... .....|.++||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~-~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~ 79 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLE-NARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGR 79 (350)
T ss_pred CceEEecccCCCcceeeec-ccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecc
Confidence 789998888875 347888 8999999 5999999999999999999988774210 01244666777
Q ss_pred eE------------------------------------------------------------------------------
Q 023556 149 DV------------------------------------------------------------------------------ 150 (280)
Q Consensus 149 e~------------------------------------------------------------------------------ 150 (280)
|+
T Consensus 80 e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~ 159 (350)
T cd08248 80 DCSGVVVDIGSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPK 159 (350)
T ss_pred eeEEEEEecCCCcccCCCCCEEEEecCCCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCc
Confidence 66
Q ss_pred -------------------------------EEecChhhHHHHHhCCCCEEEeCCCCCcccc---CCCccEEEeCCC--C
Q 023556 151 -------------------------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL---PEKFDVVYDAIG--Q 194 (280)
Q Consensus 151 -------------------------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~---~~g~DvV~d~~g--~ 194 (280)
+++.+.++.+.++++|++.+++..+.++.+. .+++|++|||+| .
T Consensus 160 ~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~vd~vi~~~g~~~ 239 (350)
T cd08248 160 NAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCSTDAIPLVKSLGADDVIDYNNEDFEEELTERGKFDVILDTVGGDT 239 (350)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCcchHHHHHHhCCceEEECCChhHHHHHHhcCCCCEEEECCChHH
Confidence 1112223444555566666666554433322 257999999998 5
Q ss_pred HHHHHhccccCCEEEEEcCCCCCC----ce---------EE-----------------EEeecHHHHHHHHHHHHCCCce
Q 023556 195 CDRAVKAIKEGGTVVALTGAVTPP----GF---------RF-----------------VVTSNGEVLKKLNPYLESGKVK 244 (280)
Q Consensus 195 ~~~~l~~l~~gG~vV~~g~~~~~~----~~---------~~-----------------~~~~~~~~l~~l~~ll~~G~l~ 244 (280)
+..++++++++|++|.+|...... .+ .+ ......+.++++++++++|.+.
T Consensus 240 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 319 (350)
T cd08248 240 EKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKLVEDGKIK 319 (350)
T ss_pred HHHHHHHhccCCEEEEecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCHHHHHHHHHHHhCCCEe
Confidence 789999999999999997542100 00 00 0122457789999999999987
Q ss_pred eecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 245 PIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 245 ~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
+... +.|+++++.+|++.+.+++..+|++++
T Consensus 320 ~~~~--~~~~~~~~~~a~~~~~~~~~~~~vv~~ 350 (350)
T cd08248 320 PVID--KVFPFEEVPEAYEKVESGHARGKTVIK 350 (350)
T ss_pred cccc--eeecHHHHHHHHHHHhcCCCceEEEeC
Confidence 6543 589999999999999998888888863
No 72
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.67 E-value=3.4e-15 Score=135.77 Aligned_cols=124 Identities=24% Similarity=0.398 Sum_probs=90.9
Q ss_pred cChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCC------
Q 023556 154 SSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP------ 218 (280)
Q Consensus 154 ~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~------ 218 (280)
.++++.++++++|++.+++++..++.+. .+++|++|||+| .+..++++|+++|+++.+|......
T Consensus 200 ~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~ 279 (347)
T cd05278 200 SNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPDPLPLLG 279 (347)
T ss_pred CCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCCcccCccc
Confidence 4556667777788888888877655432 157999999987 3689999999999999997543211
Q ss_pred -----ceEEE--EeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCC-CeeEEEE
Q 023556 219 -----GFRFV--VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKA-TGKVVIH 277 (280)
Q Consensus 219 -----~~~~~--~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~-~gkvVv~ 277 (280)
...+. .....+.++++++++++|.+++....+..|+++++.+|++.+..++. .+|+|++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~ 346 (347)
T cd05278 280 EWFGKNLTFKTGLVPVRARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIR 346 (347)
T ss_pred hhhhceeEEEeeccCchhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEec
Confidence 11111 11225789999999999999864212247899999999999998887 6899876
No 73
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.67 E-value=3e-15 Score=136.28 Aligned_cols=125 Identities=21% Similarity=0.279 Sum_probs=90.0
Q ss_pred cChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCce----
Q 023556 154 SSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGF---- 220 (280)
Q Consensus 154 ~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~---- 220 (280)
.++++.++++++|++.++++...++... .+++|++|||+| .++.++++|+++|++|.+|.......+
T Consensus 199 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~ 278 (345)
T cd08286 199 LDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGKPVDLHLEK 278 (345)
T ss_pred CCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCcEEEEecccCCCCCcCHHH
Confidence 4566777778889888898876654332 157999999987 467888999999999999864422111
Q ss_pred ------EEEEee-cHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCC--CCeeEEEEe
Q 023556 221 ------RFVVTS-NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNK--ATGKVVIHP 278 (280)
Q Consensus 221 ------~~~~~~-~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~--~~gkvVv~~ 278 (280)
.+.... ..+.++++.+++++|.+++....+++|+++++++|++.+.... ...|+||++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~ 345 (345)
T cd08286 279 LWIKNITITTGLVDTNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF 345 (345)
T ss_pred HhhcCcEEEeecCchhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence 111111 2367888999999999876432235899999999999998764 346898864
No 74
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.67 E-value=4.5e-15 Score=133.74 Aligned_cols=123 Identities=27% Similarity=0.482 Sum_probs=91.4
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCcccc---CCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCCCCC-------
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDL---PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVTPP------- 218 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~---~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~~~~------- 218 (280)
+++.++++.+.++++|.+.+++..+ +.+. ..++|++|||+| .+..++++++++|++|.++......
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~ 269 (332)
T cd08259 192 AVTRSPEKLKILKELGADYVIDGSK--FSEDVKKLGGADVVIELVGSPTIEESLRSLNKGGRLVLIGNVTPDPAPLRPGL 269 (332)
T ss_pred EEeCCHHHHHHHHHcCCcEEEecHH--HHHHHHhccCCCEEEECCChHHHHHHHHHhhcCCEEEEEcCCCCCCcCCCHHH
Confidence 3455667777777788777776654 3221 247999999998 5788999999999999997653110
Q ss_pred ----ce--EEEEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 219 ----GF--RFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 219 ----~~--~~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
.. ........+.++++.+++++|.+++.+. +.|+++++.+|++.+.+++..||+|++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~a~~~~~~~~~~~kvv~~ 332 (332)
T cd08259 270 LILKEIRIIGSISATKADVEEALKLVKEGKIKPVID--RVVSLEDINEALEDLKSGKVVGRIVLK 332 (332)
T ss_pred HHhCCcEEEEecCCCHHHHHHHHHHHHcCCCcccee--EEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence 11 1112235678999999999999986644 489999999999999999888998874
No 75
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.67 E-value=5.7e-15 Score=132.68 Aligned_cols=184 Identities=25% Similarity=0.418 Sum_probs=138.7
Q ss_pred cccCCCc--cEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-----------------
Q 023556 90 GEYGGVD--VLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV----------------- 150 (280)
Q Consensus 90 ~~~g~~~--~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~----------------- 150 (280)
..++.+. .+++. +.+.|.+++++|+|+|.++++|+.|+.++.|.++. ....|.++|+|+
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~~G~~v~~~~~G 81 (323)
T cd05282 4 TQFGEPLPLVLELV-SLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGS-RPPLPAVPGNEGVGVVVEVGSGVSGLLVG 81 (323)
T ss_pred CcCCCCccceEEeE-eCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCC-CCCCCCcCCcceEEEEEEeCCCCCCCCCC
Confidence 3344443 68888 88899999999999999999999999988776542 223445555555
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 82 d~V~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~ 161 (323)
T cd05282 82 QRVLPLGGEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKL 161 (323)
T ss_pred CEEEEeCCCCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHH
Confidence
Q ss_pred ------EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCCC
Q 023556 151 ------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVT 216 (280)
Q Consensus 151 ------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~~ 216 (280)
+++.++++.++++++|++.++++++.++... .+++|++|||+| .+..++++++++|+++.+|....
T Consensus 162 ~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~ 241 (323)
T cd05282 162 LGFKTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVKEATGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLLSG 241 (323)
T ss_pred CCCeEEEEecChHHHHHHHhcCCCEEecccchhHHHHHHHHhcCCCceEEEECCCCHHHHHHHHhhCCCCEEEEEccCCC
Confidence 5667788899999999999999876554332 257999999998 56788999999999999975432
Q ss_pred C-----------CceEEEE---e---------ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCee
Q 023556 217 P-----------PGFRFVV---T---------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGK 273 (280)
Q Consensus 217 ~-----------~~~~~~~---~---------~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gk 273 (280)
. ....+.. . ..++.++++++++++|.+.+... +.|+++++.+|++.+..++..||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~~~~~a~~~~~~~~~~~k 319 (323)
T cd05282 242 EPVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTPVG--AKFPLEDFEEAVAAAEQPGRGGK 319 (323)
T ss_pred CCCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCcccCcc--ceecHHHHHHHHHHHhcCCCCce
Confidence 1 1111111 0 11256888999999999986543 58999999999999999888899
Q ss_pred EEEE
Q 023556 274 VVIH 277 (280)
Q Consensus 274 vVv~ 277 (280)
+|++
T Consensus 320 vv~~ 323 (323)
T cd05282 320 VLLT 323 (323)
T ss_pred EeeC
Confidence 8874
No 76
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.67 E-value=1.1e-14 Score=130.35 Aligned_cols=190 Identities=36% Similarity=0.622 Sum_probs=139.3
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
|||+++...+.++.+.+. +.+.|.+.+++|+|+|.++++|+.|++...|.+. .....|.++|+|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~-~~~~~~~~~g~e~~G~v~~~G~~~~~ 78 (326)
T cd08272 1 MKALVLESFGGPEVFELR-EVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAA-ARPPLPAILGCDVAGVVEAVGEGVTR 78 (326)
T ss_pred CeEEEEccCCCchheEEe-ecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCC-CCCCCCcccccceeEEEEEeCCCCCC
Confidence 799999988877778888 8888889999999999999999999998877543 1112233333333
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 ~~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g 158 (326)
T cd08272 79 FRVGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVG 158 (326)
T ss_pred CCCCCEEEEccCCcCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHH
Confidence
Q ss_pred ---------------EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCE
Q 023556 151 ---------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGT 207 (280)
Q Consensus 151 ---------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~ 207 (280)
+++.+ ++.++++++|.+.+++.... +.+. .+++|+++||.| .+..++++++++|+
T Consensus 159 ~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~ 236 (326)
T cd08272 159 HVAVQLAKAAGARVYATASS-EKAAFARSLGADPIIYYRET-VVEYVAEHTGGRGFDVVFDTVGGETLDASFEAVALYGR 236 (326)
T ss_pred HHHHHHHHHcCCEEEEEech-HHHHHHHHcCCCEEEecchh-HHHHHHHhcCCCCCcEEEECCChHHHHHHHHHhccCCE
Confidence 33344 67777777888888877654 4332 247999999988 57789999999999
Q ss_pred EEEEcCCCC---------CCceEEEE-e----------ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHh
Q 023556 208 VVALTGAVT---------PPGFRFVV-T----------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIET 267 (280)
Q Consensus 208 vV~~g~~~~---------~~~~~~~~-~----------~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~ 267 (280)
+|.++.... ...+.... . ...+.+.+++++++++.+++.+.. +.|+++++.++++.+.+
T Consensus 237 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~ 315 (326)
T cd08272 237 VVSILGGATHDLAPLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLRPLLDP-RTFPLEEAAAAHARLES 315 (326)
T ss_pred EEEEecCCccchhhHhhhcceEEEEEcccccccccchhhHHHHHHHHHHHHHCCCccccccc-ceecHHHHHHHHHHHHc
Confidence 999875420 00111111 0 024678889999999998865432 48999999999999998
Q ss_pred CCCCeeEEEEe
Q 023556 268 NKATGKVVIHP 278 (280)
Q Consensus 268 ~~~~gkvVv~~ 278 (280)
++..+|+|+++
T Consensus 316 ~~~~~~vv~~~ 326 (326)
T cd08272 316 GSARGKIVIDV 326 (326)
T ss_pred CCcccEEEEEC
Confidence 88889999864
No 77
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.67 E-value=4.4e-15 Score=135.23 Aligned_cols=127 Identities=18% Similarity=0.288 Sum_probs=96.2
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCC-CCccccC-----CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCC---
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTK-DNFEDLP-----EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP--- 218 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~-~~~~~~~-----~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~--- 218 (280)
+++.++++.++++++|++.+++++. .++...+ +++|++|||+| .+..++++++++|+++.+|......
T Consensus 194 ~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~ 273 (345)
T cd08260 194 AVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGV 273 (345)
T ss_pred EEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCCCcc
Confidence 5667888899999999999999887 4543321 37999999987 4678999999999999998643211
Q ss_pred ce----------EEE--EeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 219 GF----------RFV--VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 219 ~~----------~~~--~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
.+ .+. .....+.++++++++++|.+.+....+..++++++++|++.++.++..||+|++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~ 344 (345)
T cd08260 274 ALPMDRVVARELEIVGSHGMPAHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT 344 (345)
T ss_pred ccCHHHHhhcccEEEeCCcCCHHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence 01 111 112357899999999999987643223489999999999999999888998864
No 78
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.67 E-value=7e-15 Score=131.28 Aligned_cols=191 Identities=28% Similarity=0.510 Sum_probs=142.6
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
||++++...+.++.+.+. +.+.|.+.+++|+|++.++++|+.|++...|.++. ....|.++|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~g~~~~~ 78 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLG-DLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPG-LPPLPYVPGSDGAGVVEAVGEGVDG 78 (325)
T ss_pred CceEEEcccCCcccceee-ecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCC-CCCCCeecccceEEEEEeeCCCCCC
Confidence 788998877666668888 89999999999999999999999999988776531 123344444444
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 ~~~Gd~v~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g 158 (325)
T cd08253 79 LKVGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVG 158 (325)
T ss_pred CCCCCEEEEeccccCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHH
Confidence
Q ss_pred ---------------EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCE
Q 023556 151 ---------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGT 207 (280)
Q Consensus 151 ---------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~ 207 (280)
+++.++++.++++++|++.++++...++.+. .+++|+++||+| .+...+++++.+|+
T Consensus 159 ~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~ 238 (325)
T cd08253 159 HAAVQLARWAGARVIATASSAEGAELVRQAGADAVFNYRAEDLADRILAATAGQGVDVIIEVLANVNLAKDLDVLAPGGR 238 (325)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHHcCCCceEEEEECCchHHHHHHHHhhCCCCE
Confidence 4555677788888889998888877654332 258999999998 57788999999999
Q ss_pred EEEEcCCCCC----------CceEEEE---e-----ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCC
Q 023556 208 VVALTGAVTP----------PGFRFVV---T-----SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNK 269 (280)
Q Consensus 208 vV~~g~~~~~----------~~~~~~~---~-----~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~ 269 (280)
++.++..... ....+.. . ...+.++.+.+++++|.+++... +.|+++++.++++.+..++
T Consensus 239 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~ 316 (325)
T cd08253 239 IVVYGSGGLRGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALRPVIA--REYPLEEAAAAHEAVESGG 316 (325)
T ss_pred EEEEeecCCcCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCccCccc--cEEcHHHHHHHHHHHHcCC
Confidence 9999863210 0111111 0 12345677788888998876543 4899999999999999988
Q ss_pred CCeeEEEEe
Q 023556 270 ATGKVVIHP 278 (280)
Q Consensus 270 ~~gkvVv~~ 278 (280)
..||+++++
T Consensus 317 ~~~kvv~~~ 325 (325)
T cd08253 317 AIGKVVLDP 325 (325)
T ss_pred CcceEEEeC
Confidence 889999864
No 79
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.67 E-value=7.1e-15 Score=133.33 Aligned_cols=125 Identities=23% Similarity=0.363 Sum_probs=93.0
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCC-CCccc----cCCCccEEEeC-CC--CHHHHHhccccCCEEEEEcCCCCCCc---
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTK-DNFED----LPEKFDVVYDA-IG--QCDRAVKAIKEGGTVVALTGAVTPPG--- 219 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~-~~~~~----~~~g~DvV~d~-~g--~~~~~l~~l~~gG~vV~~g~~~~~~~--- 219 (280)
+++.+++++++++++|++.+++++. .++.+ ..+++|+++++ .+ .+..++++++.+|+++.+|.......
T Consensus 192 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~ 271 (338)
T PRK09422 192 AVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPESMDLSI 271 (338)
T ss_pred EEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcCCCcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCCCceecH
Confidence 5567888999999999999999864 33322 22478855544 44 58999999999999999986532111
Q ss_pred -------eEEE--EeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 220 -------FRFV--VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 220 -------~~~~--~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
..+. ....++.++++++++++|.+.+.+. .++++++.+|++.+.+++..||+|+.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~v~---~~~~~~~~~a~~~~~~~~~~gkvvv~~ 336 (338)
T PRK09422 272 PRLVLDGIEVVGSLVGTRQDLEEAFQFGAEGKVVPKVQ---LRPLEDINDIFDEMEQGKIQGRMVIDF 336 (338)
T ss_pred HHHhhcCcEEEEecCCCHHHHHHHHHHHHhCCCCccEE---EEcHHHHHHHHHHHHcCCccceEEEec
Confidence 1111 1114678999999999999876533 689999999999999999889999875
No 80
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.66 E-value=1.1e-14 Score=131.23 Aligned_cols=191 Identities=33% Similarity=0.508 Sum_probs=138.0
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
|||+++...+.+..+++. +.+.|.+.+++|+|++.++|+|+.|++.+.|.++. ...+|.++|||+
T Consensus 1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~G~~~~~ 78 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYG-DLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGI-KLPLPHILGSDGAGVVEAVGPGVTN 78 (342)
T ss_pred CeEEEEecCCCccceeEe-ecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCC-CCCCCeecccceEEEEEEeCCCCCC
Confidence 789998866666678888 88888899999999999999999999988775431 111222222222
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l 158 (342)
T cd08266 79 VKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHML 158 (342)
T ss_pred CCCCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHH
Confidence
Q ss_pred -------------------------------------EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccE
Q 023556 151 -------------------------------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDV 187 (280)
Q Consensus 151 -------------------------------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~Dv 187 (280)
+++.++++.+.++.+|.+.+++..+.++.+. .+++|+
T Consensus 159 ~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 238 (342)
T cd08266 159 VTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDV 238 (342)
T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcE
Confidence 3445556666666667666676655443221 147999
Q ss_pred EEeCCC--CHHHHHhccccCCEEEEEcCCCCCC-----------ceEE--EEeecHHHHHHHHHHHHCCCceeecCCCcc
Q 023556 188 VYDAIG--QCDRAVKAIKEGGTVVALTGAVTPP-----------GFRF--VVTSNGEVLKKLNPYLESGKVKPIIDPKGP 252 (280)
Q Consensus 188 V~d~~g--~~~~~l~~l~~gG~vV~~g~~~~~~-----------~~~~--~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~ 252 (280)
++|+.| .+..++++++++|+++.++...... ...+ ........+.++++++++|.+++... +.
T Consensus 239 ~i~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~ 316 (342)
T cd08266 239 VVEHVGAATWEKSLKSLARGGRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMGTKAELDEALRLVFRGKLKPVID--SV 316 (342)
T ss_pred EEECCcHHHHHHHHHHhhcCCEEEEEecCCCCCCCcCHHHHhhcceEEEEEecCCHHHHHHHHHHHHcCCccccee--ee
Confidence 999998 5789999999999999997654210 0111 11123467889999999999887543 58
Q ss_pred cchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 253 FPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 253 ~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
|+++++.+|++.+..++..+|+|+++
T Consensus 317 ~~~~~~~~a~~~~~~~~~~~kvv~~~ 342 (342)
T cd08266 317 FPLEEAAEAHRRLESREQFGKIVLTP 342 (342)
T ss_pred EcHHHHHHHHHHHHhCCCCceEEEeC
Confidence 99999999999999888889999863
No 81
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.65 E-value=7.4e-15 Score=130.87 Aligned_cols=189 Identities=31% Similarity=0.518 Sum_probs=141.6
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
|||+++.+.+.++.+++. +.+.|.+.+|+|+|+|.++|+|+.|++...|.++ ....+|.++|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~-~~~~~~~~~g~e~~G~v~~vg~~~~~ 78 (323)
T cd05276 1 MKAIVIKEPGGPEVLELG-EVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYP-PPPGASDILGLEVAGVVVAVGPGVTG 78 (323)
T ss_pred CeEEEEecCCCcccceEE-ecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCC-CCCCCCCcccceeEEEEEeeCCCCCC
Confidence 799999887777778888 8888888999999999999999999999887664 2234566677766
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 ~~~Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~ 158 (323)
T cd05276 79 WKVGDRVCALLAGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQ 158 (323)
T ss_pred CCCCCEEEEecCCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHH
Confidence
Q ss_pred ----------EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCEEEEEc
Q 023556 151 ----------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALT 212 (280)
Q Consensus 151 ----------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g 212 (280)
+++.++++.+.++++|++.++++...++.+. .+++|++||++| .+..++++++++|+++.+|
T Consensus 159 ~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~~~~g~~i~~~ 238 (323)
T cd05276 159 LAKALGARVIATAGSEEKLEACRALGADVAINYRTEDFAEEVKEATGGRGVDVILDMVGGDYLARNLRALAPDGRLVLIG 238 (323)
T ss_pred HHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCCchhHHHHHHHHhCCCCeEEEEECCchHHHHHHHHhhccCCEEEEEe
Confidence 4445567777787788888888776544332 257999999998 5788999999999999997
Q ss_pred CCCCC---C--------ceEEE---Eee---------cHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCC
Q 023556 213 GAVTP---P--------GFRFV---VTS---------NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNK 269 (280)
Q Consensus 213 ~~~~~---~--------~~~~~---~~~---------~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~ 269 (280)
..... . ...+. ... ....+.++++++++|.+++... +.|+++++++|++.+.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~ 316 (323)
T cd05276 239 LLGGAKAELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIRPVID--KVFPLEEAAEAHRRMESNE 316 (323)
T ss_pred cCCCCCCCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCccCCcc--eEEcHHHHHHHHHHHHhCC
Confidence 64311 0 11110 000 1244677888999999876543 5899999999999999988
Q ss_pred CCeeEEE
Q 023556 270 ATGKVVI 276 (280)
Q Consensus 270 ~~gkvVv 276 (280)
..||+|+
T Consensus 317 ~~~kvv~ 323 (323)
T cd05276 317 HIGKIVL 323 (323)
T ss_pred CcceEeC
Confidence 8888874
No 82
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.65 E-value=2.2e-14 Score=129.08 Aligned_cols=190 Identities=24% Similarity=0.344 Sum_probs=139.5
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
|||+++.++|+++.++++ +.|.|.++++||+|+|.++++|+.|+++..|.++. ...+|.++|||+
T Consensus 1 ~~a~~~~~~~~~~~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~V~~~~~~~~~ 78 (324)
T cd08288 1 FKALVLEKDDGGTSAELR-ELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGI-VRTFPLVPGIDLAGTVVESSSPRFK 78 (324)
T ss_pred CeeEEEeccCCCcceEEE-ECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccc-cCCCCCccccceEEEEEeCCCCCCC
Confidence 899999988877679999 99999999999999999999999999988765410 000111111111
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 ~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~ 158 (324)
T cd08288 79 PGDRVVLTGWGVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGG 158 (324)
T ss_pred CCCEEEECCccCCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcH
Confidence
Q ss_pred -----------------EEecChhhHHHHHhCCCCEEEeCCCCCcc--cc-CCCccEEEeCCC--CHHHHHhccccCCEE
Q 023556 151 -----------------AATSSTRNLEFLKSLGADLAIDYTKDNFE--DL-PEKFDVVYDAIG--QCDRAVKAIKEGGTV 208 (280)
Q Consensus 151 -----------------~~~~s~~~~~~l~~lga~~vid~~~~~~~--~~-~~g~DvV~d~~g--~~~~~l~~l~~gG~v 208 (280)
+++.++++.++++++|+++++++++.... .. .+++|.+||++| .+..++.+++.+|++
T Consensus 159 vg~~~~~~A~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~g~~ 238 (324)
T cd08288 159 VGSVAVALLARLGYEVVASTGRPEEADYLRSLGASEIIDRAELSEPGRPLQKERWAGAVDTVGGHTLANVLAQTRYGGAV 238 (324)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCEEEEcchhhHhhhhhccCcccEEEECCcHHHHHHHHHHhcCCCEE
Confidence 45677888999999999999988753321 11 146899999998 467888999999999
Q ss_pred EEEcCCCC---CC--------ceEEEE--------eecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCC
Q 023556 209 VALTGAVT---PP--------GFRFVV--------TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNK 269 (280)
Q Consensus 209 V~~g~~~~---~~--------~~~~~~--------~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~ 269 (280)
+.+|.... .. ...+.. ....+.++.+.+++.+|.+++. . +.++++++.+|++.+++++
T Consensus 239 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~--~~~~~~~~~~a~~~~~~~~ 315 (324)
T cd08288 239 AACGLAGGADLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDPALLEAL-T--REIPLADVPDAAEAILAGQ 315 (324)
T ss_pred EEEEecCCCCCCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhcCCcccc-c--eeecHHHHHHHHHHHhcCC
Confidence 99876421 00 111110 0124567788888999988753 2 4899999999999999999
Q ss_pred CCeeEEEEe
Q 023556 270 ATGKVVIHP 278 (280)
Q Consensus 270 ~~gkvVv~~ 278 (280)
..||+|+++
T Consensus 316 ~~~~vvv~~ 324 (324)
T cd08288 316 VRGRVVVDV 324 (324)
T ss_pred ccCeEEEeC
Confidence 889999864
No 83
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.64 E-value=2.6e-14 Score=129.30 Aligned_cols=190 Identities=25% Similarity=0.400 Sum_probs=137.0
Q ss_pred eeEEEEcccCCCc---cEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE----------
Q 023556 84 MKAWLYGEYGGVD---VLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV---------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~---~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~---------- 150 (280)
|||+++.+.+++. .+.+. +.+.|.+.+++|+|++.++++|+.|++.+.|.++ ....|.++|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~ 77 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDI-ELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAP--VPGQPKILGWDASGVVEAVGSE 77 (336)
T ss_pred CceEEecCCCCCCcccceeEc-cCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCC--CCCCCcccccceEEEEEEcCCC
Confidence 6899999888764 57777 8888999999999999999999999998877543 112233333333
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 78 v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g 157 (336)
T cd08252 78 VTLFKVGDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIG 157 (336)
T ss_pred CCCCCCCCEEEEcCCCCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEc
Confidence
Q ss_pred ----------------------EEecChhhHHHHHhCCCCEEEeCCCCCcccc-----CCCccEEEeCCC---CHHHHHh
Q 023556 151 ----------------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL-----PEKFDVVYDAIG---QCDRAVK 200 (280)
Q Consensus 151 ----------------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~-----~~g~DvV~d~~g---~~~~~l~ 200 (280)
+++.++++.++++++|++++++++. ++.+. .+++|++|||+| .+..+++
T Consensus 158 ~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~i~~~~~~~~d~vl~~~~~~~~~~~~~~ 236 (336)
T cd08252 158 GAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGADHVINHHQ-DLAEQLEALGIEPVDYIFCLTDTDQHWDAMAE 236 (336)
T ss_pred CCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcCCcEEEeCCc-cHHHHHHhhCCCCCCEEEEccCcHHHHHHHHH
Confidence 3334556677777788888887764 33221 157999999987 5789999
Q ss_pred ccccCCEEEEEcCCCCC--------CceEEE---Ee-----------ecHHHHHHHHHHHHCCCceeecCC-Ccccchhh
Q 023556 201 AIKEGGTVVALTGAVTP--------PGFRFV---VT-----------SNGEVLKKLNPYLESGKVKPIIDP-KGPFPFSQ 257 (280)
Q Consensus 201 ~l~~gG~vV~~g~~~~~--------~~~~~~---~~-----------~~~~~l~~l~~ll~~G~l~~~~~~-~~~~~l~~ 257 (280)
+++++|+++.+|..... ....+. +. ...+.++++++++++|.+++.... .+.+++++
T Consensus 237 ~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 316 (336)
T cd08252 237 LIAPQGHICLIVDPQEPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINAEN 316 (336)
T ss_pred HhcCCCEEEEecCCCCcccchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCHHH
Confidence 99999999999854311 111110 10 113568889999999999865321 13589999
Q ss_pred HHHHHHHHHhCCCCeeEEEE
Q 023556 258 VVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 258 v~~A~~~l~~~~~~gkvVv~ 277 (280)
+.+|++.+.+++..+|+|++
T Consensus 317 ~~~a~~~~~~~~~~~~vv~~ 336 (336)
T cd08252 317 LREAHALLESGKTIGKIVLE 336 (336)
T ss_pred HHHHHHHHHcCCccceEEeC
Confidence 99999999999888998874
No 84
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=99.64 E-value=4.9e-15 Score=136.36 Aligned_cols=125 Identities=22% Similarity=0.249 Sum_probs=91.8
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCcccc-----CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCC--CC--
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDL-----PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVT--PP-- 218 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~-----~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~--~~-- 218 (280)
+++.+++|.+.++++|++.++++.+.++.+. .+++|+++||+| .+..++++++++|+++.+|.... ..
T Consensus 216 ~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~ 295 (365)
T cd08278 216 AVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTL 295 (365)
T ss_pred EEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCCCcccc
Confidence 4556778888888999999999887665432 258999999997 47899999999999999986521 11
Q ss_pred --------ceEEEE-----eecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 219 --------GFRFVV-----TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 219 --------~~~~~~-----~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
...+.. ....+.++++++++++|.+++.... ..|+++++.+|++.+++++. -|+||+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~-~~~~l~~~~~a~~~~~~~~~-~k~~~~ 365 (365)
T cd08278 296 DVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLV-TFYPFEDINQAIADSESGKV-IKPVLR 365 (365)
T ss_pred CHHHHhhcCceEEEeecCCcChHHHHHHHHHHHHcCCCChHHhe-EEecHHHHHHHHHHHHCCCc-eEEEEC
Confidence 111111 1124678899999999998542221 37999999999999998765 478764
No 85
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.64 E-value=1e-14 Score=135.22 Aligned_cols=127 Identities=23% Similarity=0.299 Sum_probs=91.8
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCC-ccccC------CCccEEEeCCC------------------------CHHHHH
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDN-FEDLP------EKFDVVYDAIG------------------------QCDRAV 199 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~-~~~~~------~g~DvV~d~~g------------------------~~~~~l 199 (280)
+++.++++.+++++++...++++...+ +.+.+ +++|+||||+| .+..++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (386)
T cd08283 214 AIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAI 293 (386)
T ss_pred EEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHH
Confidence 345677888888887444678777653 43321 47999999986 267899
Q ss_pred hccccCCEEEEEcCCCCC-C--c--------eEE--EEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHH
Q 023556 200 KAIKEGGTVVALTGAVTP-P--G--------FRF--VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIE 266 (280)
Q Consensus 200 ~~l~~gG~vV~~g~~~~~-~--~--------~~~--~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~ 266 (280)
++++++|+++.+|..... . . ..+ ......+.++++++++++|.+.+....++.|+++++.+|++.+.
T Consensus 294 ~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~ 373 (386)
T cd08283 294 QAVRKGGTVSIIGVYGGTVNKFPIGAAMNKGLTLRMGQTHVQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFD 373 (386)
T ss_pred HHhccCCEEEEEcCCCCCcCccCHHHHHhCCcEEEeccCCchHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHH
Confidence 999999999999865421 1 1 011 11123577899999999999986432235899999999999999
Q ss_pred hCC-CCeeEEEE
Q 023556 267 TNK-ATGKVVIH 277 (280)
Q Consensus 267 ~~~-~~gkvVv~ 277 (280)
+++ ..+|+||+
T Consensus 374 ~~~~~~~k~~~~ 385 (386)
T cd08283 374 KKEDGCIKVVLK 385 (386)
T ss_pred hCCCCeEEEEec
Confidence 887 45899985
No 86
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.64 E-value=4.1e-14 Score=125.55 Aligned_cols=189 Identities=43% Similarity=0.707 Sum_probs=137.8
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCC-CCCCCCcccCceE------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDV------------ 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~-~~~~~P~i~G~e~------------ 150 (280)
|||+++...+..+.+.+. +.+.|.+++|||+|+|.++++|+.|++...|.+.. .....|.++|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~ 79 (309)
T cd05289 1 MKAVRIHEYGGPEVLELA-DVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVT 79 (309)
T ss_pred CceEEEcccCCccceeec-ccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCC
Confidence 789999887776667777 77888899999999999999999999988775420 0011233333333
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 80 ~~~~G~~V~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~ 159 (309)
T cd05289 80 GFKVGDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGS 159 (309)
T ss_pred CCCCCCEEEEccCCCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHH
Confidence
Q ss_pred --------------EEecChhhHHHHHhCCCCEEEeCCCCCccc--cCCCccEEEeCCC--CHHHHHhccccCCEEEEEc
Q 023556 151 --------------AATSSTRNLEFLKSLGADLAIDYTKDNFED--LPEKFDVVYDAIG--QCDRAVKAIKEGGTVVALT 212 (280)
Q Consensus 151 --------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~--~~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g 212 (280)
+++.++ +.++++++|++.++++...++.. ..+++|++|||+| ....++++++++|+++.+|
T Consensus 160 ~~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 160 FAVQLAKARGARVIATASAA-NADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTVGGETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred HHHHHHHHcCCEEEEEecch-hHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEECCchHHHHHHHHHHhcCcEEEEEc
Confidence 233334 66777778888888777655542 2357999999998 5789999999999999998
Q ss_pred CCCCCC------ceEE---EEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 023556 213 GAVTPP------GFRF---VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 276 (280)
Q Consensus 213 ~~~~~~------~~~~---~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv 276 (280)
...... ...+ .+....+.+.++++++++|.+++... +.|+++++.+|++.+..++..+|+|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~kvv~ 309 (309)
T cd05289 239 GPPPAEQAAKRRGVRAGFVFVEPDGEQLAELAELVEAGKLRPVVD--RVFPLEDAAEAHERLESGHARGKVVL 309 (309)
T ss_pred CCCcchhhhhhccceEEEEEecccHHHHHHHHHHHHCCCEEEeec--cEEcHHHHHHHHHHHHhCCCCCcEeC
Confidence 654311 1111 11222678999999999999886543 58999999999999999887788774
No 87
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.64 E-value=1.2e-14 Score=132.06 Aligned_cols=125 Identities=26% Similarity=0.336 Sum_probs=92.3
Q ss_pred EecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCC--C--
Q 023556 152 ATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTP--P-- 218 (280)
Q Consensus 152 ~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~--~-- 218 (280)
++.++++.++++++|+++++++++.++.+. .+++|+||||+| .+..++++++++|+++.++..... .
T Consensus 196 ~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~ 275 (343)
T cd08235 196 SDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGSTVNI 275 (343)
T ss_pred ECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCCCCccc
Confidence 345667777777788888888887665442 146999999988 468899999999999999864421 1
Q ss_pred --------ceE--EEEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 219 --------GFR--FVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 219 --------~~~--~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
.+. .......+.++++++++++|.+++......+|+++++.+|++.+.+++ .+|+|+.
T Consensus 276 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~k~vi~ 343 (343)
T cd08235 276 DPNLIHYREITITGSYAASPEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGK-SLKIVIT 343 (343)
T ss_pred CHHHHhhCceEEEEEecCChhhHHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCC-cEEEEeC
Confidence 111 112224577899999999999874211224799999999999999999 8999873
No 88
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.64 E-value=1.3e-14 Score=133.45 Aligned_cols=126 Identities=21% Similarity=0.329 Sum_probs=95.8
Q ss_pred EecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCC--C--
Q 023556 152 ATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTP--P-- 218 (280)
Q Consensus 152 ~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~--~-- 218 (280)
++.++++.++++++|++.+++++..++.+. .+++|+||||+| .+..++++|+++|+++.++..... .
T Consensus 218 ~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~ 297 (367)
T cd08263 218 VDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEI 297 (367)
T ss_pred EeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCCCcccc
Confidence 446778888888899999999887665432 257999999988 367899999999999999865321 0
Q ss_pred --------ceEEEE---eecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 219 --------GFRFVV---TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 219 --------~~~~~~---~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
...+.. ...++.++++++++++|.+++....++.|+++++.+|++.+++++..||+||+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 367 (367)
T cd08263 298 PITRLVRRGIKIIGSYGARPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE 367 (367)
T ss_pred CHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence 111111 11247899999999999998754333589999999999999999888999984
No 89
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.64 E-value=2.6e-14 Score=129.34 Aligned_cols=185 Identities=31% Similarity=0.421 Sum_probs=134.2
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
|||+++.+++ .+++. +.+.|.+.+|||+|+|+++++|+.|++...|.++.. +|.++|+|+
T Consensus 1 ~~a~~~~~~~---~~~~~-~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~~---~p~~~g~~~~G~v~~vG~~v~~ 73 (334)
T cd08234 1 MKALVYEGPG---ELEVE-EVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAA---PPLVPGHEFAGVVVAVGSKVTG 73 (334)
T ss_pred CeeEEecCCC---ceEEE-eccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCCC---CCcccccceEEEEEEeCCCCCC
Confidence 7899998765 48888 899999999999999999999999999987765311 111111111
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 74 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~~~~~~a~~~l~ 153 (334)
T cd08234 74 FKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVHGLD 153 (334)
T ss_pred CCCCCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhhhHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------EEecChhhHHHHHhCCCCEEEeCCCCCccc----cCCCccEEEeC
Q 023556 151 -----------------------------------AATSSTRNLEFLKSLGADLAIDYTKDNFED----LPEKFDVVYDA 191 (280)
Q Consensus 151 -----------------------------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~----~~~g~DvV~d~ 191 (280)
+++.++++.++++++|++.++++...++.. ..+++|++|||
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~ 233 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEA 233 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEEC
Confidence 344566667777777777777776654321 23679999999
Q ss_pred CC---CHHHHHhccccCCEEEEEcCCCCC--Cc----------eEE-EEeecHHHHHHHHHHHHCCCceeecCCCcccch
Q 023556 192 IG---QCDRAVKAIKEGGTVVALTGAVTP--PG----------FRF-VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPF 255 (280)
Q Consensus 192 ~g---~~~~~l~~l~~gG~vV~~g~~~~~--~~----------~~~-~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l 255 (280)
+| .+..++++|+++|+++.+|..... .. +.+ ......+.++++++++++|.+++....+.+|++
T Consensus 234 ~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 313 (334)
T cd08234 234 TGVPKTLEQAIEYARRGGTVLVFGVYAPDARVSISPFEIFQKELTIIGSFINPYTFPRAIALLESGKIDVKGLVSHRLPL 313 (334)
T ss_pred CCChHHHHHHHHHHhcCCEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccCHHHHHHHHHHHHcCCCChhhhEEEEecH
Confidence 87 478899999999999999865421 10 111 112245778999999999998754322247999
Q ss_pred hhHHHHHHHHHhCCCCeeEEE
Q 023556 256 SQVVEAFSYIETNKATGKVVI 276 (280)
Q Consensus 256 ~~v~~A~~~l~~~~~~gkvVv 276 (280)
+++.+|++.+.+ +..||+|+
T Consensus 314 ~~~~~a~~~~~~-~~~~k~vi 333 (334)
T cd08234 314 EEVPEALEGMRS-GGALKVVV 333 (334)
T ss_pred HHHHHHHHHHhc-CCceEEEe
Confidence 999999999998 77789886
No 90
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.64 E-value=1.6e-14 Score=131.03 Aligned_cols=126 Identities=33% Similarity=0.457 Sum_probs=96.5
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCccccC------CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCC---
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLP------EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP--- 218 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~------~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~--- 218 (280)
+++.++++.++++++|++++++++..++.+.+ +++|++|||+| .+..++++|+++|+++.+|......
T Consensus 188 ~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~~~~~~ 267 (337)
T cd08261 188 VVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGPVTFP 267 (337)
T ss_pred EECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCCCCCccC
Confidence 45577888888888999999999876654422 46999999986 4788999999999999987554211
Q ss_pred -------ceEEE--EeecHHHHHHHHHHHHCCCcee--ecCCCcccchhhHHHHHHHHHhCC-CCeeEEEEe
Q 023556 219 -------GFRFV--VTSNGEVLKKLNPYLESGKVKP--IIDPKGPFPFSQVVEAFSYIETNK-ATGKVVIHP 278 (280)
Q Consensus 219 -------~~~~~--~~~~~~~l~~l~~ll~~G~l~~--~~~~~~~~~l~~v~~A~~~l~~~~-~~gkvVv~~ 278 (280)
.+.+. .....+.++++++++++|.+++ ... .+++++++.+|++.+.+++ ..+|+|+++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~k~v~~~ 337 (337)
T cd08261 268 DPEFHKKELTILGSRNATREDFPDVIDLLESGKVDPEALIT--HRFPFEDVPEAFDLWEAPPGGVIKVLIEF 337 (337)
T ss_pred HHHHHhCCCEEEEeccCChhhHHHHHHHHHcCCCChhhheE--EEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 11111 1234578899999999999987 433 4899999999999999884 679999864
No 91
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.63 E-value=5.1e-14 Score=126.26 Aligned_cols=190 Identities=31% Similarity=0.478 Sum_probs=138.6
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
|||+++.++++.+.++++ +.+.|.+.+++|+|+|.++++|+.|+....|.... ...|.++|||+
T Consensus 1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~g~e~~G~v~~~G~~~~~ 77 (325)
T cd08271 1 MKAWVLPKPGAALQLTLE-EIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA--WSYPHVPGVDGAGVVVAVGAKVTG 77 (325)
T ss_pred CeeEEEccCCCcceeEEe-ccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC--CCCCcccccceEEEEEEeCCCCCc
Confidence 799999988753458999 89999999999999999999999999987765421 11133334433
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 78 ~~~Gd~V~~~~~~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~ 157 (325)
T cd08271 78 WKVGDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSF 157 (325)
T ss_pred CCCCCEEEeccCCCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHH
Confidence
Q ss_pred ------------EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCEEEE
Q 023556 151 ------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTVVA 210 (280)
Q Consensus 151 ------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~ 210 (280)
+.+.++++.+++..+|++.+++....++... .+++|+++||.| ....++++++++|+++.
T Consensus 158 ~~~~a~~~g~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~G~~v~ 237 (325)
T cd08271 158 AVQLAKRAGLRVITTCSKRNFEYVKSLGADHVIDYNDEDVCERIKEITGGRGVDAVLDTVGGETAAALAPTLAFNGHLVC 237 (325)
T ss_pred HHHHHHHcCCEEEEEEcHHHHHHHHHcCCcEEecCCCccHHHHHHHHcCCCCCcEEEECCCcHhHHHHHHhhccCCEEEE
Confidence 2223566777777788888887766554321 257999999988 46778999999999999
Q ss_pred EcCCCCC-------CceEE---EE------------eecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhC
Q 023556 211 LTGAVTP-------PGFRF---VV------------TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETN 268 (280)
Q Consensus 211 ~g~~~~~-------~~~~~---~~------------~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~ 268 (280)
++..... ....+ .+ ...++.+.+++++++++.+++... +.|+++++.++++.+.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~a~~~~~~~ 315 (325)
T cd08271 238 IQGRPDASPDPPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLEPLVI--EVLPFEQLPEALRALKDR 315 (325)
T ss_pred EcCCCCCcchhHHhhcceEEEEEecccccccchhhHHHHHHHHHHHHHHHHCCCeeeccc--eEEcHHHHHHHHHHHHcC
Confidence 8744321 00111 00 012245678889999999986533 589999999999999998
Q ss_pred CCCeeEEEEe
Q 023556 269 KATGKVVIHP 278 (280)
Q Consensus 269 ~~~gkvVv~~ 278 (280)
+..+|+|+++
T Consensus 316 ~~~~kiv~~~ 325 (325)
T cd08271 316 HTRGKIVVTI 325 (325)
T ss_pred CccceEEEEC
Confidence 8889999864
No 92
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.63 E-value=3.6e-14 Score=128.01 Aligned_cols=187 Identities=33% Similarity=0.540 Sum_probs=140.5
Q ss_pred eEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE--------------
Q 023556 85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV-------------- 150 (280)
Q Consensus 85 ka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~-------------- 150 (280)
||+.+...+.+..+++. +.+.|.|.++||+|+|.++++|+.|++++.|.++. ...+|.++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~ 79 (331)
T cd08273 2 REVVVTRRGGPEVLKVV-EADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPD-QPPLPFTPGYDLVGRVDALGSGVTGF 79 (331)
T ss_pred eeEEEccCCCcccEEEe-ccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCC-CCCCCcccccceEEEEEEeCCCCccC
Confidence 78999988887789999 89999999999999999999999999999887642 123566677766
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 80 ~~Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~ 159 (331)
T cd08273 80 EVGDRVAALTRVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLEL 159 (331)
T ss_pred CCCCEEEEeCCCcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHH
Confidence
Q ss_pred --------EEecChhhHHHHHhCCCCEEEeCCCCCccc--c-CCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCCCC
Q 023556 151 --------AATSSTRNLEFLKSLGADLAIDYTKDNFED--L-PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVTP 217 (280)
Q Consensus 151 --------~~~~s~~~~~~l~~lga~~vid~~~~~~~~--~-~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~~~ 217 (280)
+.+.++++.++++++|++. +++...++.. . .+++|+++||+| .+..++++++.+|+++.+|.....
T Consensus 160 a~~~g~~v~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~ 238 (331)
T cd08273 160 ALLAGAEVYGTASERNHAALRELGATP-IDYRTKDWLPAMLTPGGVDVVFDGVGGESYEESYAALAPGGTLVCYGGNSSL 238 (331)
T ss_pred HHHcCCEEEEEeCHHHHHHHHHcCCeE-EcCCCcchhhhhccCCCceEEEECCchHHHHHHHHHhcCCCEEEEEccCCCC
Confidence 2222366777777788653 4555444322 1 257999999988 578999999999999999865421
Q ss_pred Cc-------------------eE-----E---EEe--------ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHH
Q 023556 218 PG-------------------FR-----F---VVT--------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAF 262 (280)
Q Consensus 218 ~~-------------------~~-----~---~~~--------~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~ 262 (280)
.. .. + ... ...+.++++++++++|.+++... +.|+++++.+|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~a~ 316 (331)
T cd08273 239 LQGRRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIRPKIA--KRLPLSEVAEAH 316 (331)
T ss_pred CCccccccchhhhhhhhhhhcceeccceeEEEeechhcccCHHHHHHHHHHHHHHHHCCCccCCcc--eEEcHHHHHHHH
Confidence 11 00 0 101 12367888999999999986543 489999999999
Q ss_pred HHHHhCCCCeeEEE
Q 023556 263 SYIETNKATGKVVI 276 (280)
Q Consensus 263 ~~l~~~~~~gkvVv 276 (280)
+.+.+++..||+|+
T Consensus 317 ~~~~~~~~~gkvv~ 330 (331)
T cd08273 317 RLLESGKVVGKIVL 330 (331)
T ss_pred HHHHcCCCcceEEe
Confidence 99999888899886
No 93
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.63 E-value=1.4e-14 Score=131.91 Aligned_cols=125 Identities=27% Similarity=0.386 Sum_probs=91.4
Q ss_pred ecChhhHHHHHhCCCCEEEeCCCCCccc---c--CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCce----
Q 023556 153 TSSTRNLEFLKSLGADLAIDYTKDNFED---L--PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGF---- 220 (280)
Q Consensus 153 ~~s~~~~~~l~~lga~~vid~~~~~~~~---~--~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~---- 220 (280)
..+++|.+.++++|++++++++..++.. . .+++|++|||+| .+..++++|+++|+++.+|.......+
T Consensus 195 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~ 274 (341)
T cd05281 195 DPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGPVDIDLNN 274 (341)
T ss_pred CCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCcccccch
Confidence 3567777888889998888887665531 1 257999999987 368999999999999999754421111
Q ss_pred -------EEEE---eecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 221 -------RFVV---TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 221 -------~~~~---~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
.+.. ....+.++++.+++++|.+++....+..++++++.+|++.+.+++ .||+|+++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~gk~vv~~ 341 (341)
T cd05281 275 LVIFKGLTVQGITGRKMFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGK-CGKVVLYP 341 (341)
T ss_pred hhhccceEEEEEecCCcchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcCC-CceEEecC
Confidence 1111 112466788999999999864322224789999999999999999 89999863
No 94
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.63 E-value=1e-14 Score=132.73 Aligned_cols=123 Identities=15% Similarity=0.193 Sum_probs=90.3
Q ss_pred cChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCce----
Q 023556 154 SSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGF---- 220 (280)
Q Consensus 154 ~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~---- 220 (280)
.++++.+.++++|++.+++++..++.+. .+++|+++||+| .+..++++++++|+++.+|.......+
T Consensus 201 ~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~ 280 (345)
T cd08287 201 RHEDRQALAREFGATDIVAERGEEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGVELDVRE 280 (345)
T ss_pred CCHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCCCccCHHH
Confidence 4455667777888888888877655432 147999999997 478999999999999998765421111
Q ss_pred ------EE--EEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 221 ------RF--VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 221 ------~~--~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
.+ ......+.++++++++++|.+++....++.|+++++.+|++.++.++. .|++|+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-~k~~~~ 344 (345)
T cd08287 281 LFFRNVGLAGGPAPVRRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRA-IKVLLR 344 (345)
T ss_pred HHhcceEEEEecCCcHHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCc-eEEEeC
Confidence 11 112235789999999999999864322358999999999999987665 489885
No 95
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.63 E-value=4e-14 Score=127.89 Aligned_cols=119 Identities=25% Similarity=0.321 Sum_probs=88.2
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCccccCCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCC-CCceEE----
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVT-PPGFRF---- 222 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~-~~~~~~---- 222 (280)
+++.++++.++++++|++.+++++.. ..+++|+++++.+ .++.++++++++|+++.+|.... ...+.+
T Consensus 196 ~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~ 271 (329)
T cd08298 196 AFTRSGEHQELARELGADWAGDSDDL----PPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLAGIHMSDIPAFDYELLW 271 (329)
T ss_pred EEcCChHHHHHHHHhCCcEEeccCcc----CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCCCCCCCccchhhhh
Confidence 45556677777877888777776532 1257999999865 58899999999999998875331 111110
Q ss_pred -------EEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 023556 223 -------VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 276 (280)
Q Consensus 223 -------~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv 276 (280)
......+.++++++++++|.+++. ++.|+++++.+|++.++.++..||+|+
T Consensus 272 ~~~~i~~~~~~~~~~~~~~~~l~~~~~l~~~---~~~~~~~~~~~a~~~~~~~~~~~~~v~ 329 (329)
T cd08298 272 GEKTIRSVANLTRQDGEEFLKLAAEIPIKPE---VETYPLEEANEALQDLKEGRIRGAAVL 329 (329)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHcCCCCce---EEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence 112345778999999999998864 248999999999999999998899874
No 96
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.62 E-value=5.9e-14 Score=124.89 Aligned_cols=188 Identities=29% Similarity=0.477 Sum_probs=138.3
Q ss_pred eEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE--------------
Q 023556 85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV-------------- 150 (280)
Q Consensus 85 ka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~-------------- 150 (280)
||+.+...+.+..+.+. +.+.+.+.++||+|+|.++|+|+.|++...|.++. .+|.++|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~---~~~~~~g~e~~G~v~~~g~~~~~~ 76 (320)
T cd05286 1 KAVRIHKTGGPEVLEYE-DVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL---PLPFVLGVEGAGVVEAVGPGVTGF 76 (320)
T ss_pred CeEEEecCCCccceEEe-ecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC---CCCccCCcceeEEEEEECCCCCCC
Confidence 46677666666667887 77777889999999999999999999988776531 2222333333
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 77 ~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~ 156 (320)
T cd05286 77 KVGDRVAYAGPPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQW 156 (320)
T ss_pred CCCCEEEEecCCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHH
Confidence
Q ss_pred ---------EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCEEEEEcC
Q 023556 151 ---------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 151 ---------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~ 213 (280)
+++.++++.++++++|++.++++...++.+. .+++|++|||.| .+..++++++++|+++.+|.
T Consensus 157 a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v~~g~ 236 (320)
T cd05286 157 AKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVGKDTFEGSLDSLRPRGTLVSFGN 236 (320)
T ss_pred HHHcCCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECCCcHhHHHHHHhhccCcEEEEEec
Confidence 4556778888888899999888776554332 257999999987 57889999999999999986
Q ss_pred CCCC-----------CceEEE------Eee----cHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCe
Q 023556 214 AVTP-----------PGFRFV------VTS----NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATG 272 (280)
Q Consensus 214 ~~~~-----------~~~~~~------~~~----~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~g 272 (280)
.... ..+.+. +.. ..+.+++++++++++.+.+... +.|+++++.+|++.+.+++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~a~~~~~~~~~~~ 314 (320)
T cd05286 237 ASGPVPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKVEIG--KRYPLADAAQAHRDLESRKTTG 314 (320)
T ss_pred CCCCCCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCccc--ceEcHHHHHHHHHHHHcCCCCc
Confidence 4321 011111 001 1245677889999999886533 4899999999999999988889
Q ss_pred eEEEEe
Q 023556 273 KVVIHP 278 (280)
Q Consensus 273 kvVv~~ 278 (280)
|+|+++
T Consensus 315 ~vv~~~ 320 (320)
T cd05286 315 KLLLIP 320 (320)
T ss_pred eEEEeC
Confidence 998853
No 97
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.61 E-value=4.2e-14 Score=130.00 Aligned_cols=125 Identities=18% Similarity=0.277 Sum_probs=91.5
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCC--CC-
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVT--PP- 218 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~--~~- 218 (280)
+++.++++.++++++|++++++++..++... .+++|++|||+| .+..++++|+++|+++.+|.... ..
T Consensus 212 ~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~ 291 (363)
T cd08279 212 AVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVS 291 (363)
T ss_pred EEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCCCcccc
Confidence 3456777888888899999998877655432 257999999988 46899999999999999975431 10
Q ss_pred ---------ceEEE---E--eecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEE
Q 023556 219 ---------GFRFV---V--TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVV 275 (280)
Q Consensus 219 ---------~~~~~---~--~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvV 275 (280)
...+. + ....+.++++++++++|.+++....+++|+++++.+|++.+++++..+.++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 362 (363)
T cd08279 292 LPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI 362 (363)
T ss_pred cCHHHHhhcCcEEEEEEecCcCcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence 00001 1 124678999999999999876321224799999999999999888765444
No 98
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.60 E-value=4.5e-14 Score=128.37 Aligned_cols=122 Identities=23% Similarity=0.345 Sum_probs=89.0
Q ss_pred cChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCC-------
Q 023556 154 SSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTP------- 217 (280)
Q Consensus 154 ~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~------- 217 (280)
.++++.++++++|++ +++++..++... .+++|++|||+| .+..++++++++|++|.+|.....
T Consensus 200 ~~~~~~~~~~~~g~~-~~~~~~~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~ 278 (344)
T cd08284 200 PVPERLERAAALGAE-PINFEDAEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGL 278 (344)
T ss_pred CCHHHHHHHHHhCCe-EEecCCcCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEECcCCCCCccccHH
Confidence 455666777777764 466665554332 257999999988 478999999999999999866411
Q ss_pred ----CceEE--EEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEE
Q 023556 218 ----PGFRF--VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 218 ----~~~~~--~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
....+ ......+.++++++++++|.+++....++.|+++++.+|++.+++++. +|+|++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~Vi~ 343 (344)
T cd08284 279 DAYNKNLTLRFGRCPVRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKV-LKVVLD 343 (344)
T ss_pred HHhhcCcEEEEecCCcchhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCc-eEEEec
Confidence 01111 223456889999999999998764322348999999999999998877 999985
No 99
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.59 E-value=9e-14 Score=124.28 Aligned_cols=180 Identities=21% Similarity=0.231 Sum_probs=132.8
Q ss_pred ccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHH-cCCCCCCCCCCCcccCceE------------------------
Q 023556 96 DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRR-QGKFKATDSPLPTVPGYDV------------------------ 150 (280)
Q Consensus 96 ~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~-~g~~~~~~~~~P~i~G~e~------------------------ 150 (280)
+.+++. +.+.|.+.++||+|+|.++++|+.|++.+ .|..+......|.++|+|+
T Consensus 5 ~~~~~~-~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~ 83 (312)
T cd08269 5 GRFEVE-EHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLS 83 (312)
T ss_pred CeeEEE-ECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEec
Confidence 458889 89999999999999999999999999988 7754311122466777777
Q ss_pred ---------------------------------------------------------------------------EEecC
Q 023556 151 ---------------------------------------------------------------------------AATSS 155 (280)
Q Consensus 151 ---------------------------------------------------------------------------~~~~s 155 (280)
++..+
T Consensus 84 ~g~~~~~~~v~~~~~~~lP~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~ 163 (312)
T cd08269 84 GGAFAEYDLADADHAVPLPSLLDGQAFPGEPLGCALNVFRRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRR 163 (312)
T ss_pred CCcceeeEEEchhheEECCCchhhhHHhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence 34445
Q ss_pred hhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCC-CC-------
Q 023556 156 TRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVT-PP------- 218 (280)
Q Consensus 156 ~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~-~~------- 218 (280)
+++.++++++|++.++++...++.+. .+++|+++||.| .+..++++|+++|+++.+|.... +.
T Consensus 164 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~ 243 (312)
T cd08269 164 PARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQDGPRPVPFQTW 243 (312)
T ss_pred HHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCCcccCHHHH
Confidence 66777777888888887665554332 257999999987 47899999999999999986531 10
Q ss_pred ---ceEE--EE----eecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCC-CeeEEE
Q 023556 219 ---GFRF--VV----TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKA-TGKVVI 276 (280)
Q Consensus 219 ---~~~~--~~----~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~-~gkvVv 276 (280)
...+ .. ....+.++++++++++|.+++....++.|+++++.+|++.+.+++. .+|+|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 311 (312)
T cd08269 244 NWKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI 311 (312)
T ss_pred hhcCCEEEEecccCccchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence 0111 11 1124789999999999999864322247999999999999999864 688886
No 100
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.58 E-value=2.8e-13 Score=122.08 Aligned_cols=190 Identities=33% Similarity=0.520 Sum_probs=138.0
Q ss_pred eEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE--------------
Q 023556 85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV-------------- 150 (280)
Q Consensus 85 ka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~-------------- 150 (280)
||+.+...+....+.+. +.+.|.+++++|+|+|.++|+|+.|++.+.|.++. ....|.++|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~g~~~~~~ 78 (337)
T cd08275 1 RAVVLTGFGGLDKLKVE-KEALPEPSSGEVRVRVEACGLNFADLMARQGLYDS-APKPPFVPGFECAGTVEAVGEGVKDF 78 (337)
T ss_pred CeEEEcCCCCccceEEE-ecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC-CCCCCCCCcceeEEEEEEECCCCcCC
Confidence 45666666655568888 77888899999999999999999999998886541 223455666666
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 ~~G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~ 158 (337)
T cd08275 79 KVGDRVMGLTRFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQL 158 (337)
T ss_pred CCCCEEEEecCCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHH
Confidence
Q ss_pred -------EEe--cChhhHHHHHhCCCCEEEeCCCCCcccc-----CCCccEEEeCCC--CHHHHHhccccCCEEEEEcCC
Q 023556 151 -------AAT--SSTRNLEFLKSLGADLAIDYTKDNFEDL-----PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 151 -------~~~--~s~~~~~~l~~lga~~vid~~~~~~~~~-----~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~ 214 (280)
.++ ..+++.++++.+|++.+++++..++... .+++|+++||+| .+..++++++++|+++.+|..
T Consensus 159 a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~l~~~g~~v~~g~~ 238 (337)
T cd08275 159 CKTVPNVTVVGTASASKHEALKENGVTHVIDYRTQDYVEEVKKISPEGVDIVLDALGGEDTRKSYDLLKPMGRLVVYGAA 238 (337)
T ss_pred HHHccCcEEEEeCCHHHHHHHHHcCCcEEeeCCCCcHHHHHHHHhCCCceEEEECCcHHHHHHHHHhhccCcEEEEEeec
Confidence 111 1233677777788888888876555332 257999999998 578899999999999999865
Q ss_pred CCC----C-----------------------ceEE---EEe-------ecHHHHHHHHHHHHCCCceeecCCCcccchhh
Q 023556 215 VTP----P-----------------------GFRF---VVT-------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQ 257 (280)
Q Consensus 215 ~~~----~-----------------------~~~~---~~~-------~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~ 257 (280)
... . ...+ .+. .....+.++++++++|.+++... +.|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 316 (337)
T cd08275 239 NLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIKPKID--SVFPFEE 316 (337)
T ss_pred CCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCCCCcee--eEEcHHH
Confidence 311 0 0000 000 01235778889999999876643 4899999
Q ss_pred HHHHHHHHHhCCCCeeEEEEe
Q 023556 258 VVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 258 v~~A~~~l~~~~~~gkvVv~~ 278 (280)
++++++.+..++..||+|+++
T Consensus 317 ~~~~~~~~~~~~~~~kvv~~~ 337 (337)
T cd08275 317 VGEAMRRLQSRKNIGKVVLTP 337 (337)
T ss_pred HHHHHHHHHcCCCcceEEEeC
Confidence 999999999988889999864
No 101
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.58 E-value=1.2e-13 Score=125.69 Aligned_cols=123 Identities=24% Similarity=0.372 Sum_probs=88.2
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCcccc----C--CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCC---
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDL----P--EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP--- 218 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~----~--~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~--- 218 (280)
+++.++++.++++++|++.+++++... .+. . +++|++|||+| .+..++++|+++|+++.+|......
T Consensus 189 ~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~ 267 (343)
T cd08236 189 AVDIDDEKLAVARELGADDTINPKEED-VEKVRELTEGRGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGDVTLS 267 (343)
T ss_pred EEcCCHHHHHHHHHcCCCEEecCcccc-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCCcccc
Confidence 344466777888888888888887654 221 1 46999999987 4789999999999999998543210
Q ss_pred ----------ceEE---EEe----ecHHHHHHHHHHHHCCCce--eecCCCcccchhhHHHHHHHHHh-CCCCeeEEE
Q 023556 219 ----------GFRF---VVT----SNGEVLKKLNPYLESGKVK--PIIDPKGPFPFSQVVEAFSYIET-NKATGKVVI 276 (280)
Q Consensus 219 ----------~~~~---~~~----~~~~~l~~l~~ll~~G~l~--~~~~~~~~~~l~~v~~A~~~l~~-~~~~gkvVv 276 (280)
...+ ... ..++.++++++++++|.++ +... ..+++++++++++.+++ +...||+|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~k~v~ 343 (343)
T cd08236 268 EEAFEKILRKELTIQGSWNSYSAPFPGDEWRTALDLLASGKIKVEPLIT--HRLPLEDGPAAFERLADREEFSGKVLL 343 (343)
T ss_pred cCCHHHHHhcCcEEEEEeeccccccchhhHHHHHHHHHcCCCChHHhee--eeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence 0111 111 1256788999999999986 3333 48999999999999998 556688874
No 102
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.58 E-value=3.6e-13 Score=120.34 Aligned_cols=191 Identities=30% Similarity=0.495 Sum_probs=140.5
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
|||+.+...+.+..+.+. +.+.|.+++++|+|+|.++++|+.|++...|.++. ...+|.++|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~vg~~~~~ 78 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLV-EVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPP-PPGASDILGLEVAGEVVAVGEGVSR 78 (325)
T ss_pred CceEEEccCCCcccceEE-eCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCCCCccceeEEEEEEeCCCCCC
Confidence 788888877766667787 77777789999999999999999999988776641 223455666665
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~ 158 (325)
T TIGR02824 79 WKVGDRVCALVAGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQ 158 (325)
T ss_pred CCCCCEEEEccCCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHH
Confidence
Q ss_pred ----------EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCEEEEEc
Q 023556 151 ----------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALT 212 (280)
Q Consensus 151 ----------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g 212 (280)
+++.++++.++++++|++.+++....++.+. .+++|+++||+| .+..++++++++|+++.+|
T Consensus 159 ~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~g~~v~~g 238 (325)
T TIGR02824 159 LAKAFGARVFTTAGSDEKCAACEALGADIAINYREEDFVEVVKAETGGKGVDVILDIVGGSYLNRNIKALALDGRIVQIG 238 (325)
T ss_pred HHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCchhHHHHHHHHcCCCCeEEEEECCchHHHHHHHHhhccCcEEEEEe
Confidence 4445666777777788877777765444332 147999999988 5788999999999999998
Q ss_pred CCCCC-----------CceEEEE---ee---------cHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCC
Q 023556 213 GAVTP-----------PGFRFVV---TS---------NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNK 269 (280)
Q Consensus 213 ~~~~~-----------~~~~~~~---~~---------~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~ 269 (280)
..... ....+.. .. ..+.+.+++++++++.+++... +.|+++++.++++.+..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 316 (325)
T TIGR02824 239 FQGGRKAELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVRPVID--KVFPLEDAAQAHALMESGD 316 (325)
T ss_pred cCCCCcCCCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCcccCccc--cEEeHHHHHHHHHHHHhCC
Confidence 64310 0111110 00 1245677888999999876533 5899999999999999988
Q ss_pred CCeeEEEEe
Q 023556 270 ATGKVVIHP 278 (280)
Q Consensus 270 ~~gkvVv~~ 278 (280)
..+|+|+++
T Consensus 317 ~~~~~v~~~ 325 (325)
T TIGR02824 317 HIGKIVLTV 325 (325)
T ss_pred CcceEEEeC
Confidence 889999864
No 103
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.57 E-value=2e-13 Score=123.14 Aligned_cols=124 Identities=28% Similarity=0.413 Sum_probs=93.7
Q ss_pred EEecChhhHHHHHh-CCCCEEEeCCCCCcccc-----CCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCCCCC----
Q 023556 151 AATSSTRNLEFLKS-LGADLAIDYTKDNFEDL-----PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVTPP---- 218 (280)
Q Consensus 151 ~~~~s~~~~~~l~~-lga~~vid~~~~~~~~~-----~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~~~~---- 218 (280)
+++.++++.+++++ +|+++++++++.++.+. .+++|++|||+| .+..++++++++|+++.+|......
T Consensus 175 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~ 254 (329)
T cd05288 175 GIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDNVGGEILDAALTLLNKGGRIALCGAISQYNATEP 254 (329)
T ss_pred EEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEEcchHHHHHHHHHhcCCCceEEEEeeccCcccccc
Confidence 45567788898888 99999999887655332 257999999998 5889999999999999998543211
Q ss_pred ------------ceEEE---Eeec----HHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 023556 219 ------------GFRFV---VTSN----GEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 276 (280)
Q Consensus 219 ------------~~~~~---~~~~----~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv 276 (280)
...+. +... .+.+.++++++++|.+++.... .++++++.++++.+.+++..||+|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~--~~~l~~~~~a~~~~~~~~~~gkvvv 329 (329)
T cd05288 255 PGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYREDV--VEGLENAPEAFLGLFTGKNTGKLVV 329 (329)
T ss_pred cccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccccc--cccHHHHHHHHHHHhcCCCccceeC
Confidence 01111 0111 3567889999999999876443 6899999999999999888888874
No 104
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.57 E-value=2.5e-13 Score=121.54 Aligned_cols=191 Identities=31% Similarity=0.560 Sum_probs=137.7
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------- 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------- 150 (280)
||++++...+.+..+.+. +.+.|.+.+++|+|+|.++++|+.|+++..|.++. ...+|.++|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~~G~~~~~ 78 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIE-ELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIE-PPPLPARLGYEAAGVVEAVGAGVTG 78 (328)
T ss_pred CeEEEEeccCCcceeEEe-ecCCCCCCCCeEEEEEEEEecChHHhheeccccCC-CCCCCCCCCcceEEEEEeeCCCCCc
Confidence 788998877766678888 88888899999999999999999999987776531 112233344433
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 79 ~~~Gd~V~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g 158 (328)
T cd08268 79 FAVGDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVG 158 (328)
T ss_pred CCCCCEEEeccccccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHH
Confidence
Q ss_pred ---------------EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCE
Q 023556 151 ---------------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGT 207 (280)
Q Consensus 151 ---------------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~ 207 (280)
+++.+.++.++++++|++.++++....+... .+++|++++|.| ....++++++++|+
T Consensus 159 ~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~ 238 (328)
T cd08268 159 LAAIQIANAAGATVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVGGPQFAKLADALAPGGT 238 (328)
T ss_pred HHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHhCCCCceEEEECCchHhHHHHHHhhccCCE
Confidence 4455667777777788888887766544322 147999999988 57889999999999
Q ss_pred EEEEcCCCCC---C--------ceEE---EE-------eecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHH
Q 023556 208 VVALTGAVTP---P--------GFRF---VV-------TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIE 266 (280)
Q Consensus 208 vV~~g~~~~~---~--------~~~~---~~-------~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~ 266 (280)
++.+|..... . ...+ .+ ......++.+.+++.++.+.+... ..|+++++.++++.+.
T Consensus 239 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 316 (328)
T cd08268 239 LVVYGALSGEPTPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLASGALKPVVD--RVFPFDDIVEAHRYLE 316 (328)
T ss_pred EEEEEeCCCCCCCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHHHHHHHCCCCcCCcc--cEEcHHHHHHHHHHHH
Confidence 9999754310 0 1111 11 011245666777788888876543 4899999999999999
Q ss_pred hCCCCeeEEEEe
Q 023556 267 TNKATGKVVIHP 278 (280)
Q Consensus 267 ~~~~~gkvVv~~ 278 (280)
.++..+|+|+++
T Consensus 317 ~~~~~~~vv~~~ 328 (328)
T cd08268 317 SGQQIGKIVVTP 328 (328)
T ss_pred cCCCCceEEEeC
Confidence 888888999863
No 105
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.57 E-value=1.8e-13 Score=126.45 Aligned_cols=122 Identities=20% Similarity=0.363 Sum_probs=86.6
Q ss_pred cChhhHHHHHhCCCCEEEeCCCCCcccc-----CCCccEEEeCCC-C-------------HHHHHhccccCCEEEEEcCC
Q 023556 154 SSTRNLEFLKSLGADLAIDYTKDNFEDL-----PEKFDVVYDAIG-Q-------------CDRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 154 ~s~~~~~~l~~lga~~vid~~~~~~~~~-----~~g~DvV~d~~g-~-------------~~~~l~~l~~gG~vV~~g~~ 214 (280)
.++++.++++++|+ ..++++++++.+. .+++|++|||+| . +..++++++++|+++.+|..
T Consensus 209 ~~~~~~~~~~~~g~-~~v~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~ 287 (375)
T cd08282 209 HVPERLDLAESIGA-IPIDFSDGDPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVY 287 (375)
T ss_pred CCHHHHHHHHHcCC-eEeccCcccHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEecc
Confidence 45666677777777 3566665554332 147999999987 2 68999999999999888754
Q ss_pred CCC-------------CceEE------------EEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCC
Q 023556 215 VTP-------------PGFRF------------VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNK 269 (280)
Q Consensus 215 ~~~-------------~~~~~------------~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~ 269 (280)
... ..+.+ .....++.++.+++++++|.+++....++.|+++++++|++.+.+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~ 367 (375)
T cd08282 288 VAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGTGQAPVKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRL 367 (375)
T ss_pred CCcccccccccccCccccccHHHHHhcCcEEEEecCCchhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCC
Confidence 310 00110 00113467888999999999986422335899999999999999998
Q ss_pred CCeeEEEE
Q 023556 270 ATGKVVIH 277 (280)
Q Consensus 270 ~~gkvVv~ 277 (280)
.+|+|++
T Consensus 368 -~~kvvv~ 374 (375)
T cd08282 368 -ETKVVIK 374 (375)
T ss_pred -ceEEEeC
Confidence 8999985
No 106
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.57 E-value=4.7e-13 Score=119.38 Aligned_cols=189 Identities=35% Similarity=0.514 Sum_probs=136.6
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCC-CCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE------------
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV------------ 150 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~-~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~------------ 150 (280)
|+|+++...+....+++. +.+ |.+. +++++|++.++++|+.|++...|.+.. ....|.++|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~g~~~~ 77 (323)
T cd08241 1 MKAVVCKELGGPEDLVLE-EVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQV-KPPLPFVPGSEVAGVVEAVGEGVT 77 (323)
T ss_pred CeEEEEecCCCcceeEEe-cCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCC-CCCCCCcccceeEEEEEEeCCCCC
Confidence 789998877766668888 777 7776 499999999999999999988775531 111233344433
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 78 ~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~ 157 (323)
T cd08241 78 GFKVGDRVVALTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAV 157 (323)
T ss_pred CCCCCCEEEEecCCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHH
Confidence
Q ss_pred -----------EEecChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCEEEEE
Q 023556 151 -----------AATSSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTVVAL 211 (280)
Q Consensus 151 -----------~~~~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~ 211 (280)
+++.++++.++++++|++.+++....++.+. .+++|+++||+| .+..++++++++|+++.+
T Consensus 158 ~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~g~~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 158 QLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVGGDVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred HHHHHhCCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEECccHHHHHHHHHhhccCCEEEEE
Confidence 4445566777777788888887766554332 257999999998 578899999999999998
Q ss_pred cCCCCCCc-----------eEEEE---e--------ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCC
Q 023556 212 TGAVTPPG-----------FRFVV---T--------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNK 269 (280)
Q Consensus 212 g~~~~~~~-----------~~~~~---~--------~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~ 269 (280)
|....... ..+.. . ...+.+++++++++++.+++... +.|+++++.++++.+.+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 315 (323)
T cd08241 238 GFASGEIPQIPANLLLLKNISVVGVYWGAYARREPELLRANLAELFDLLAEGKIRPHVS--AVFPLEQAAEALRALADRK 315 (323)
T ss_pred ccCCCCcCcCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHHHHHHHHCCCcccccc--eEEcHHHHHHHHHHHHhCC
Confidence 75431111 11111 0 02367788999999999876543 5899999999999999888
Q ss_pred CCeeEEEE
Q 023556 270 ATGKVVIH 277 (280)
Q Consensus 270 ~~gkvVv~ 277 (280)
..+|++++
T Consensus 316 ~~~~vvv~ 323 (323)
T cd08241 316 ATGKVVLT 323 (323)
T ss_pred CCCcEEeC
Confidence 78888863
No 107
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=99.56 E-value=1.2e-13 Score=127.22 Aligned_cols=123 Identities=18% Similarity=0.259 Sum_probs=91.0
Q ss_pred ecChhhHHHHHhCCCCEEEeCCCC--Ccccc-----CCCccEEEeCCC---CHHHHHhccc-cCCEEEEEcCCC--CCCc
Q 023556 153 TSSTRNLEFLKSLGADLAIDYTKD--NFEDL-----PEKFDVVYDAIG---QCDRAVKAIK-EGGTVVALTGAV--TPPG 219 (280)
Q Consensus 153 ~~s~~~~~~l~~lga~~vid~~~~--~~~~~-----~~g~DvV~d~~g---~~~~~l~~l~-~gG~vV~~g~~~--~~~~ 219 (280)
..++++.++++++|+++++++.+. ++.+. .+++|+|||++| .+..++++++ ++|+++.+|... ....
T Consensus 215 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~ 294 (365)
T cd05279 215 DINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEAT 294 (365)
T ss_pred eCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCCCcee
Confidence 357888999999999999988776 43221 258999999997 4789999999 999999997643 1111
Q ss_pred e---------EE--E---EeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 023556 220 F---------RF--V---VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 276 (280)
Q Consensus 220 ~---------~~--~---~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv 276 (280)
+ .+ . -....+.+..+++++++|.+++....+++|+++++.+|++.+++++. .|+++
T Consensus 295 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-~~~~~ 364 (365)
T cd05279 295 LDPNDLLTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGES-IRTIL 364 (365)
T ss_pred eCHHHHhcCCeEEEEeccCCchHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCc-eeeee
Confidence 1 11 0 01345788999999999998864233458999999999999988765 35554
No 108
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.56 E-value=4e-13 Score=121.42 Aligned_cols=123 Identities=27% Similarity=0.403 Sum_probs=91.6
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCccc-cCCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCc----eEE
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFED-LPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPG----FRF 222 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~-~~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~----~~~ 222 (280)
+++.++++.++++++|++.++++....... ..+++|++|||++ .+..++++|+++|+++.++....... ..+
T Consensus 191 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~ 270 (330)
T cd08245 191 AITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAAAEAALGGLRRGGRIVLVGLPESPPFSPDIFPL 270 (330)
T ss_pred EEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHHHHHHHHHhcccCCEEEEECCCCCCccccchHHH
Confidence 556777888888888988888776544321 2257999999976 47899999999999999976431110 000
Q ss_pred ---------EEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 023556 223 ---------VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 276 (280)
Q Consensus 223 ---------~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv 276 (280)
........++.+++++++|.+++.. +.|+++++.+|++.+.+++..||+|+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~---~~~~~~~~~~a~~~~~~~~~~~~~v~ 330 (330)
T cd08245 271 IMKRQSIAGSTHGGRADLQEALDFAAEGKVKPMI---ETFPLDQANEAYERMEKGDVRFRFVL 330 (330)
T ss_pred HhCCCEEEEeccCCHHHHHHHHHHHHcCCCcceE---EEEcHHHHHHHHHHHHcCCCCcceeC
Confidence 1111457888999999999997533 47999999999999999988898875
No 109
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.56 E-value=1.1e-13 Score=125.91 Aligned_cols=124 Identities=20% Similarity=0.277 Sum_probs=90.4
Q ss_pred cChhhHHHHHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCc-----
Q 023556 154 SSTRNLEFLKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPG----- 219 (280)
Q Consensus 154 ~s~~~~~~l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~----- 219 (280)
.++++.++++++|++.++++...++.+. .+++|++|||+| .+..++++|+++|+++.+|.......
T Consensus 194 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~ 273 (340)
T TIGR00692 194 PNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPGKVTIDFTN 273 (340)
T ss_pred CCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEccCCCCcccchhh
Confidence 5566777788888888888876665432 257999999987 47889999999999999986531111
Q ss_pred ------eEEEE---eecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 220 ------FRFVV---TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 220 ------~~~~~---~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
+.+.. ....+.+.++++++++|.++.....+..++++++.++++.+++++. ||+|+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-gkvvv~~ 340 (340)
T TIGR00692 274 KVIFKGLTIYGITGRHMFETWYTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQT-GKVILSL 340 (340)
T ss_pred hhhhcceEEEEEecCCchhhHHHHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCCC-ceEEEeC
Confidence 11111 1134567889999999998732212348999999999999998874 9999864
No 110
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.56 E-value=2.2e-13 Score=123.67 Aligned_cols=128 Identities=22% Similarity=0.338 Sum_probs=93.7
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCcccc---CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCC------
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDL---PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP------ 218 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~---~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~------ 218 (280)
+++.++++.++++++|++++++++..++... .+++|++|||.| .++.++++|+++|++|.+|......
T Consensus 195 ~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g~~~~~~~~~~~~ 274 (339)
T cd08232 195 ATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGAPAALASALRVVRPGGTVVQVGMLGGPVPLPLNA 274 (339)
T ss_pred EECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccCcHHH
Confidence 3445667777788888888888876543221 246999999987 3789999999999999998543111
Q ss_pred ----ceEEE-EeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 219 ----GFRFV-VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 219 ----~~~~~-~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
.+.+. .....+.++++++++++|.+++....++.|+++++.+|++.+..++..||+|+++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~ 339 (339)
T cd08232 275 LVAKELDLRGSFRFDDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF 339 (339)
T ss_pred HhhcceEEEEEecCHHHHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence 01111 1124567899999999999875432224899999999999999888889999863
No 111
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=99.56 E-value=2e-13 Score=126.10 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=86.2
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCC--cccc-----CCCccEEEeCCC---CHHHHHhcc-ccCCEEEEEcCCCCCCc
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDN--FEDL-----PEKFDVVYDAIG---QCDRAVKAI-KEGGTVVALTGAVTPPG 219 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~--~~~~-----~~g~DvV~d~~g---~~~~~l~~l-~~gG~vV~~g~~~~~~~ 219 (280)
+++.+++++++++++|+++++++.+.+ +... .+++|+++||+| .+..++..+ +++|+++.+|.......
T Consensus 220 ~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~ 299 (373)
T cd08299 220 AVDINKDKFAKAKELGATECINPQDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQN 299 (373)
T ss_pred EEcCCHHHHHHHHHcCCceEecccccchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCCce
Confidence 344678889999999999999876533 2221 257999999998 356767765 57999999986542111
Q ss_pred eE-----------EE---Ee--ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 220 FR-----------FV---VT--SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 220 ~~-----------~~---~~--~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
+. +. .. .....+.++.+.+.++.++.....++.|+++++.+|++.+++++. .|+|+++
T Consensus 300 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~-~k~~~~~ 373 (373)
T cd08299 300 LSINPMLLLTGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKS-IRTVLTF 373 (373)
T ss_pred eecCHHHHhcCCeEEEEEecCCccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCc-ceEEEeC
Confidence 11 10 11 123567777777777766543223468999999999999987765 5777753
No 112
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.55 E-value=4.8e-13 Score=122.95 Aligned_cols=126 Identities=22% Similarity=0.232 Sum_probs=88.0
Q ss_pred EecChhhHHHHHhCCCCEEEeCCC--CCcccc--------CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCC
Q 023556 152 ATSSTRNLEFLKSLGADLAIDYTK--DNFEDL--------PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP 218 (280)
Q Consensus 152 ~~~s~~~~~~l~~lga~~vid~~~--~~~~~~--------~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~ 218 (280)
+..++++.++++++|++.++++.. .++.+. .+++|+||||+| .+..++++|+++|+++.+|......
T Consensus 212 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~ 291 (364)
T PLN02702 212 VDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHNEM 291 (364)
T ss_pred ECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCC
Confidence 344566777788889888877542 333221 257999999988 4789999999999999998543211
Q ss_pred ----------ceEE-EEeecHHHHHHHHHHHHCCCceeecCCCcccc--hhhHHHHHHHHHhCCCCeeEEEE
Q 023556 219 ----------GFRF-VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFP--FSQVVEAFSYIETNKATGKVVIH 277 (280)
Q Consensus 219 ----------~~~~-~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~--l~~v~~A~~~l~~~~~~gkvVv~ 277 (280)
.+.+ ........++.+++++++|.+.+....++.|+ ++++++|++.+.+++..+|+||.
T Consensus 292 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~ 363 (364)
T PLN02702 292 TVPLTPAAAREVDVVGVFRYRNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFN 363 (364)
T ss_pred cccHHHHHhCccEEEEeccChHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence 0111 11123467889999999998863211224644 48999999999998888999985
No 113
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=99.55 E-value=4e-15 Score=116.37 Aligned_cols=108 Identities=38% Similarity=0.632 Sum_probs=77.8
Q ss_pred CCCCEEEeCCCCCccccCCCccEEEeCCC--C---HHHHHhccccCCEEEEEcCC-C------CCCceEE--EE--ee--
Q 023556 165 LGADLAIDYTKDNFEDLPEKFDVVYDAIG--Q---CDRAVKAIKEGGTVVALTGA-V------TPPGFRF--VV--TS-- 226 (280)
Q Consensus 165 lga~~vid~~~~~~~~~~~g~DvV~d~~g--~---~~~~l~~l~~gG~vV~~g~~-~------~~~~~~~--~~--~~-- 226 (280)
|||+++|||+++++ ...+++|+||||+| . +..++++| ++|++|.++.. . ....+.+ .+ ..
T Consensus 1 LGAd~vidy~~~~~-~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (127)
T PF13602_consen 1 LGADEVIDYRDTDF-AGPGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGGDLPSFARRLKGRSIRYSFLFSVDPNA 78 (127)
T ss_dssp CT-SEEEETTCSHH-HTTS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-SHHHHHHHHHHCHHCEEECCC-H--HH
T ss_pred CCcCEEecCCCccc-cCCCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECCcccchhhhhcccceEEEEEEecCCCc
Confidence 79999999998888 44689999999998 2 36667788 99999999851 1 0111122 21 11
Q ss_pred -cHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 023556 227 -NGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 276 (280)
Q Consensus 227 -~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv 276 (280)
.++.++++.+++++|+|++.+.. +|+|+++.+|++.+++++..||+||
T Consensus 79 ~~~~~l~~l~~l~~~G~l~~~i~~--~f~l~~~~~A~~~l~~~~~~GKvVl 127 (127)
T PF13602_consen 79 IRAEALEELAELVAEGKLKPPIDR--VFPLEEAPEAHERLESGHARGKVVL 127 (127)
T ss_dssp HHHHHHHHHHHHHHTTSS---EEE--EEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred hHHHHHHHHHHHHHCCCeEEeecc--EECHHHHHHHHHHHHhCCCCCeEeC
Confidence 34669999999999999999986 8999999999999999999999997
No 114
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.53 E-value=3.8e-13 Score=122.49 Aligned_cols=126 Identities=29% Similarity=0.317 Sum_probs=91.9
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCc---cc----c--CCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCC
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNF---ED----L--PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP 218 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~---~~----~--~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~ 218 (280)
+++.++++.++++++|++.++++++.++ .+ . .+++|++|||.| .+..++++++++|+++.+|......
T Consensus 192 ~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~ 271 (343)
T cd05285 192 VTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPEV 271 (343)
T ss_pred EECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCC
Confidence 3445677888888899999999887664 22 1 256999999988 4688999999999999997543211
Q ss_pred c----------eEE-EEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCC-CCeeEEE
Q 023556 219 G----------FRF-VVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNK-ATGKVVI 276 (280)
Q Consensus 219 ~----------~~~-~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~-~~gkvVv 276 (280)
. +.+ ......+.+++++++++++.++.....++.|+++++.+|++.+.+++ ..+|++|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~ 341 (343)
T cd05285 272 TLPLSAASLREIDIRGVFRYANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI 341 (343)
T ss_pred ccCHHHHhhCCcEEEEeccChHHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence 1 111 11123477889999999998753221224799999999999999885 4589987
No 115
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.51 E-value=1.7e-12 Score=115.99 Aligned_cols=185 Identities=42% Similarity=0.687 Sum_probs=128.9
Q ss_pred EcccCCCccE--EEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCCCCC-CCCCCcccCceE---------------
Q 023556 89 YGEYGGVDVL--KFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-DSPLPTVPGYDV--------------- 150 (280)
Q Consensus 89 ~~~~g~~~~l--~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~-~~~~P~i~G~e~--------------- 150 (280)
+...++++++ ++. +.+.|.++++||+|++.++++|+.|++...|.++.. ....|..+|+|+
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~ 81 (319)
T cd08267 3 YTRYGSPEVLLLLEV-EVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFK 81 (319)
T ss_pred eCCCCChhhhhhccc-cCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCC
Confidence 4455555444 778 889999999999999999999999999887754200 011122333333
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 82 ~Gd~V~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~ 161 (319)
T cd08267 82 VGDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAV 161 (319)
T ss_pred CCCEEEEeccCCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHH
Confidence
Q ss_pred ----------EEecChhhHHHHHhCCCCEEEeCCCCCcc---ccCCCccEEEeCCCC----HHHHHhccccCCEEEEEcC
Q 023556 151 ----------AATSSTRNLEFLKSLGADLAIDYTKDNFE---DLPEKFDVVYDAIGQ----CDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 151 ----------~~~~s~~~~~~l~~lga~~vid~~~~~~~---~~~~g~DvV~d~~g~----~~~~l~~l~~gG~vV~~g~ 213 (280)
+++.+.++.++++++|++.++++...++. ...+++|+++||+|. ....+..++++|+++.+|.
T Consensus 162 ~la~~~g~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~ 241 (319)
T cd08267 162 QIAKALGAHVTGVCSTRNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGG 241 (319)
T ss_pred HHHHHcCCEEEEEeCHHHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEECCCchHHHHHHhhhccCCCCEEEEecc
Confidence 22224477788888898888887765542 123679999999882 2334444999999999986
Q ss_pred CCCCCc----------------eE-EEEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 023556 214 AVTPPG----------------FR-FVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 276 (280)
Q Consensus 214 ~~~~~~----------------~~-~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv 276 (280)
...... +. .......+.+.+++++++++.+++... +.|+++++.+|++.+.+++..+|+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~i~~a~~~~~~~~~~~~vvv 319 (319)
T cd08267 242 GPSGLLLVLLLLPLTLGGGGRRLKFFLAKPNAEDLEQLAELVEEGKLKPVID--SVYPLEDAPEAYRRLKSGRARGKVVI 319 (319)
T ss_pred ccccccccccccchhhccccceEEEEEecCCHHHHHHHHHHHHCCCeeeeee--eEEcHHHHHHHHHHHhcCCCCCcEeC
Confidence 531100 00 011223688999999999999987644 58999999999999999887788874
No 116
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.50 E-value=1.5e-12 Score=118.86 Aligned_cols=123 Identities=33% Similarity=0.551 Sum_probs=88.5
Q ss_pred cChhhHHHHHhCCCCEEEeCCCCC---cc-c---c---CCCccEEEeCCC---CHHHHHhccc---cCCEEEEEcCCCC-
Q 023556 154 SSTRNLEFLKSLGADLAIDYTKDN---FE-D---L---PEKFDVVYDAIG---QCDRAVKAIK---EGGTVVALTGAVT- 216 (280)
Q Consensus 154 ~s~~~~~~l~~lga~~vid~~~~~---~~-~---~---~~g~DvV~d~~g---~~~~~l~~l~---~gG~vV~~g~~~~- 216 (280)
.++++.++++++|+++++++++.+ +. + . .+++|++|||+| .+..++++++ ++|++|.+++...
T Consensus 185 ~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~~~~~~ 264 (352)
T cd08247 185 CSSRSAELNKKLGADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIVGDYKA 264 (352)
T ss_pred eChhHHHHHHHhCCCEEEecCCCcccchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEeCCCcc
Confidence 345555677778888888877655 22 1 1 368999999988 3578899999 9999998753220
Q ss_pred ---C-------------Cce---------EEE---EeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhC
Q 023556 217 ---P-------------PGF---------RFV---VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETN 268 (280)
Q Consensus 217 ---~-------------~~~---------~~~---~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~ 268 (280)
. ..+ .+. .....+.++++++++++|.+++... +.++++++++|++.++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~l~~~~~a~~~~~~~ 342 (352)
T cd08247 265 NYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFLLDPNADWIEKCAELIADGKVKPPID--SVYPFEDYKEAFERLKSN 342 (352)
T ss_pred cccchhhhhccccchhhhhhhhhhcCCCcceEEEEecCCHHHHHHHHHHHhCCCeEeeec--cEecHHHHHHHHHHHHcC
Confidence 0 000 000 1112367888999999999987644 489999999999999999
Q ss_pred CCCeeEEEEe
Q 023556 269 KATGKVVIHP 278 (280)
Q Consensus 269 ~~~gkvVv~~ 278 (280)
+..||+|+++
T Consensus 343 ~~~gkvvi~~ 352 (352)
T cd08247 343 RAKGKVVIKV 352 (352)
T ss_pred CCCCcEEEeC
Confidence 8889999864
No 117
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.50 E-value=8.6e-13 Score=118.99 Aligned_cols=112 Identities=21% Similarity=0.321 Sum_probs=76.5
Q ss_pred HHHHHhCCCCEEEeCCCC--CccccCCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCCC-CCceE------------
Q 023556 159 LEFLKSLGADLAIDYTKD--NFEDLPEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVT-PPGFR------------ 221 (280)
Q Consensus 159 ~~~l~~lga~~vid~~~~--~~~~~~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~~-~~~~~------------ 221 (280)
.++++++|+++++++++. .+....+++|+|+||+| .+..++++|+++|++|.+|.... ...+.
T Consensus 196 ~~~~~~~g~~~~~~~~~~~~~l~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~ 275 (325)
T cd08264 196 KDWLKEFGADEVVDYDEVEEKVKEITKMADVVINSLGSSFWDLSLSVLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISII 275 (325)
T ss_pred HHHHHHhCCCeeecchHHHHHHHHHhCCCCEEEECCCHHHHHHHHHhhccCCEEEEEecCCCCCCccCHHHHhhcCcEEE
Confidence 355666777777776531 11111267999999998 68899999999999999986421 11111
Q ss_pred EEEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeE
Q 023556 222 FVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKV 274 (280)
Q Consensus 222 ~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkv 274 (280)
......++.+++++++++.+.+ .+. +.|+++++.+|++.+.+++..+|+
T Consensus 276 ~~~~~~~~~~~~~~~l~~~~~~--~~~--~~~~~~~~~~a~~~~~~~~~~~kv 324 (325)
T cd08264 276 GSTGGTRKELLELVKIAKDLKV--KVW--KTFKLEEAKEALKELFSKERDGRI 324 (325)
T ss_pred EccCCCHHHHHHHHHHHHcCCc--eeE--EEEcHHHHHHHHHHHHcCCCcccc
Confidence 0111124688889999965442 233 489999999999999988776765
No 118
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.49 E-value=8.4e-13 Score=116.92 Aligned_cols=168 Identities=29% Similarity=0.505 Sum_probs=127.2
Q ss_pred CCCCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE-----------------------------------
Q 023556 106 VPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV----------------------------------- 150 (280)
Q Consensus 106 ~p~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~----------------------------------- 150 (280)
.|.+.+++|+|++.++++|+.|++.+.|.++. ...+|.++|+|+
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~ 80 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPT-MPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGESMGGHATLV 80 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCC-CCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCCCCcceeeEE
Confidence 57889999999999999999999999887642 234566666666
Q ss_pred ---------------------------------------------------------------------EEecChhhHHH
Q 023556 151 ---------------------------------------------------------------------AATSSTRNLEF 161 (280)
Q Consensus 151 ---------------------------------------------------------------------~~~~s~~~~~~ 161 (280)
+++.++++.++
T Consensus 81 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~ 160 (303)
T cd08251 81 TVPEDQVVRKPASLSFEEACALPVVFLTVIDAFARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEY 160 (303)
T ss_pred EccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 44556778888
Q ss_pred HHhCCCCEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCCCC--C---------ceEE
Q 023556 162 LKSLGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVTP--P---------GFRF 222 (280)
Q Consensus 162 l~~lga~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~~~--~---------~~~~ 222 (280)
++++|++.++++...++... .+++|+++||++ .+..++++++++|+++.+|..... . ...+
T Consensus 161 ~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 240 (303)
T cd08251 161 LKQLGVPHVINYVEEDFEEEIMRLTGGRGVDVVINTLSGEAIQKGLNCLAPGGRYVEIAMTALKSAPSVDLSVLSNNQSF 240 (303)
T ss_pred HHHcCCCEEEeCCCccHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHhccCcEEEEEeccCCCccCccChhHhhcCceE
Confidence 88899999998877654432 257999999987 578899999999999998754311 0 1111
Q ss_pred -EEe----------ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 023556 223 -VVT----------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 276 (280)
Q Consensus 223 -~~~----------~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv 276 (280)
... ...+.+.++.+++++|.+++... +.|+++++.++++.+.+++..||+|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iv~ 303 (303)
T cd08251 241 HSVDLRKLLLLDPEFIADYQAEMVSLVEEGELRPTVS--RIFPFDDIGEAYRYLSDRENIGKVVV 303 (303)
T ss_pred EEEehHHhhhhCHHHHHHHHHHHHHHHHCCCccCCCc--eEEcHHHHHHHHHHHHhCCCcceEeC
Confidence 111 01245788899999999886543 58999999999999999988888874
No 119
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.49 E-value=1.8e-12 Score=120.09 Aligned_cols=124 Identities=23% Similarity=0.256 Sum_probs=87.8
Q ss_pred EecChhhHHHHHhCCCCEEEeCCCC---Ccccc------CCCccEEEeCCC----CHHHHHhccccCCEEEEEcCCCCCC
Q 023556 152 ATSSTRNLEFLKSLGADLAIDYTKD---NFEDL------PEKFDVVYDAIG----QCDRAVKAIKEGGTVVALTGAVTPP 218 (280)
Q Consensus 152 ~~~s~~~~~~l~~lga~~vid~~~~---~~~~~------~~g~DvV~d~~g----~~~~~l~~l~~gG~vV~~g~~~~~~ 218 (280)
++.++++.+.++++|+++++++++. ++.+. .+++|+|+||+| .+..++++|+++|+++.+|......
T Consensus 234 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~~~ 313 (384)
T cd08265 234 FEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTV 313 (384)
T ss_pred EcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCCCC
Confidence 3345667777788888888887743 33322 257999999988 2578899999999999998653211
Q ss_pred ce----------EEEE---eecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 023556 219 GF----------RFVV---TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 276 (280)
Q Consensus 219 ~~----------~~~~---~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv 276 (280)
.+ .+.. ......++++++++++|.+++....++.|+++++.+|++.+.++ ..||+|+
T Consensus 314 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~-~~~kvvv 383 (384)
T cd08265 314 PLHLEVLQVRRAQIVGAQGHSGHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASER-TDGKITI 383 (384)
T ss_pred cccHHHHhhCceEEEEeeccCCcchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcC-CCceEEe
Confidence 11 1110 12345789999999999998643233589999999999997665 5688875
No 120
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.36 E-value=1.4e-11 Score=107.26 Aligned_cols=127 Identities=21% Similarity=0.396 Sum_probs=102.8
Q ss_pred EEecChhhHHHHHh-CCCCEEEeCCCC-Ccccc-----CCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCC-----C
Q 023556 151 AATSSTRNLEFLKS-LGADLAIDYTKD-NFEDL-----PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAV-----T 216 (280)
Q Consensus 151 ~~~~s~~~~~~l~~-lga~~vid~~~~-~~~~~-----~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~-----~ 216 (280)
..+.+.+|.+++++ +|-|..|||+++ +..++ .+|+|+.||.+| .++..+..|+..||++.+|... .
T Consensus 183 GsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVGG~~lDavl~nM~~~gri~~CG~ISqYN~~~ 262 (343)
T KOG1196|consen 183 GSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENVGGKMLDAVLLNMNLHGRIAVCGMISQYNLEN 262 (343)
T ss_pred EecCChhhhhhhHhccCCccceeccCccCHHHHHHHhCCCcceEEEeccCcHHHHHHHHhhhhccceEeeeeehhccccC
Confidence 56678899999976 899999999998 44443 279999999999 5899999999999999999765 1
Q ss_pred CCceE--------------EE----EeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEEEe
Q 023556 217 PPGFR--------------FV----VTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVIHP 278 (280)
Q Consensus 217 ~~~~~--------------~~----~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv~~ 278 (280)
+..+. |. .....+.++.+.+++++|+|+-..+. .-+|+...+||.-|.+|+..||.++.+
T Consensus 263 ~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~ikegKI~y~edi--~~Glen~P~A~vglf~GkNvGKqiv~v 340 (343)
T KOG1196|consen 263 PEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYIKEGKITYVEDI--ADGLENGPSALVGLFHGKNVGKQLVKV 340 (343)
T ss_pred CccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHHhcCceEEehhH--HHHHhccHHHHHHHhccCcccceEEEe
Confidence 11110 01 11234778999999999999988875 678999999999999999999999987
Q ss_pred C
Q 023556 279 I 279 (280)
Q Consensus 279 ~ 279 (280)
.
T Consensus 341 a 341 (343)
T KOG1196|consen 341 A 341 (343)
T ss_pred e
Confidence 4
No 121
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=99.34 E-value=7.2e-12 Score=124.19 Aligned_cols=183 Identities=22% Similarity=0.348 Sum_probs=142.7
Q ss_pred CCCccEEEeeeccCC---CCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCC-------cccCceE------------
Q 023556 93 GGVDVLKFDEKVTVP---QVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP-------TVPGYDV------------ 150 (280)
Q Consensus 93 g~~~~l~l~~~~~~p---~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P-------~i~G~e~------------ 150 (280)
|+...++|. +.|.. +..++.=+.-|.|+.||..|+.+..|+.++ ..+| ..+|.|+
T Consensus 1424 GDlsSlrWi-es~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~--DAiPG~~a~qdclLGmEFsGRd~~GrRvM~ 1500 (2376)
T KOG1202|consen 1424 GDLSSLRWI-ESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSP--DAIPGDLASQDCLLGMEFSGRDASGRRVMG 1500 (2376)
T ss_pred ccccceeee-ecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCc--ccCCCccchhhheeceeeccccCCCcEEEE
Confidence 455668888 77654 347788899999999999999999999863 3333 5678888
Q ss_pred --------------------------------------------------------------------------------
Q 023556 151 -------------------------------------------------------------------------------- 150 (280)
Q Consensus 151 -------------------------------------------------------------------------------- 150 (280)
T Consensus 1501 mvpAksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~~V 1580 (2376)
T KOG1202|consen 1501 MVPAKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGCTV 1580 (2376)
T ss_pred eeehhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCCEE
Confidence
Q ss_pred -EEecChhhHHHHHh----CCCCEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCCC-
Q 023556 151 -AATSSTRNLEFLKS----LGADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVT- 216 (280)
Q Consensus 151 -~~~~s~~~~~~l~~----lga~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~~- 216 (280)
.++.|.+|+++|.. +....+-|+++.+|+.. ++|+|+|++... -++.+++||+.+||+..+|-...
T Consensus 1581 FTTVGSaEKRefL~~rFPqLqe~~~~NSRdtsFEq~vl~~T~GrGVdlVLNSLaeEkLQASiRCLa~~GRFLEIGKfDLS 1660 (2376)
T KOG1202|consen 1581 FTTVGSAEKREFLLKRFPQLQETNFANSRDTSFEQHVLWHTKGRGVDLVLNSLAEEKLQASIRCLALHGRFLEIGKFDLS 1660 (2376)
T ss_pred EEecCcHHHHHHHHHhchhhhhhcccccccccHHHHHHHHhcCCCeeeehhhhhHHHHHHHHHHHHhcCeeeeecceecc
Confidence 68899999999965 56788889999888764 479999999987 68999999999999999987652
Q ss_pred ---CCce-------EE-------EEeecHHHHHHHHHHHHC----CCceeecCCCcccchhhHHHHHHHHHhCCCCeeEE
Q 023556 217 ---PPGF-------RF-------VVTSNGEVLKKLNPYLES----GKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVV 275 (280)
Q Consensus 217 ---~~~~-------~~-------~~~~~~~~l~~l~~ll~~----G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvV 275 (280)
+.++ .| .+...-+.+.++.+++++ |.++|... ++|+-.++++||++|.+|+..||+|
T Consensus 1661 qNspLGMavfLkNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIksGvV~PL~t--tvF~~~qvE~AFRfMasGKHIGKVv 1738 (2376)
T KOG1202|consen 1661 QNSPLGMAVFLKNVSFHGILLDSVMEGEEEMWREVAALVAEGIKSGVVRPLPT--TVFHGQQVEDAFRFMASGKHIGKVV 1738 (2376)
T ss_pred cCCcchhhhhhcccceeeeehhhhhcCcHHHHHHHHHHHHhhhccCceecccc--ccccHHHHHHHHHHHhccCccceEE
Confidence 1111 11 223344667777777665 56777666 4999999999999999999999999
Q ss_pred EEeCC
Q 023556 276 IHPIP 280 (280)
Q Consensus 276 v~~~~ 280 (280)
+++.+
T Consensus 1739 ikvr~ 1743 (2376)
T KOG1202|consen 1739 IKVRA 1743 (2376)
T ss_pred EEEcc
Confidence 99863
No 122
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.33 E-value=2.7e-11 Score=106.11 Aligned_cols=124 Identities=26% Similarity=0.370 Sum_probs=90.1
Q ss_pred EEecChhhHHHHHhCC--CCEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCCCC---
Q 023556 151 AATSSTRNLEFLKSLG--ADLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVTP--- 217 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lg--a~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~~~--- 217 (280)
+++.++++.++++.+| ++.++++...++.+. .+++|+++||+| .+..++++++++|+++.+|.....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~ 217 (293)
T cd05195 138 ATVGSEEKREFLRELGGPVDHIFSSRDLSFADGILRATGGRGVDVVLNSLSGELLRASWRCLAPFGRFVEIGKRDILSNS 217 (293)
T ss_pred EEeCCHHHHHHHHHhCCCcceEeecCchhHHHHHHHHhCCCCceEEEeCCCchHHHHHHHhcccCceEEEeeccccccCC
Confidence 4445667778888877 678888766544332 257999999998 588999999999999999765421
Q ss_pred -Cc-------eEEEE-e----------ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 023556 218 -PG-------FRFVV-T----------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 276 (280)
Q Consensus 218 -~~-------~~~~~-~----------~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv 276 (280)
.. ..+.. . ...+.+.++.+++++|.+++... +.+.++++.++++.+..++..+|+|+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~ivv 293 (293)
T cd05195 218 KLGMRPFLRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLKPLPP--TVVPSASEIDAFRLMQSGKHIGKVVL 293 (293)
T ss_pred ccchhhhccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcccCCC--eeechhhHHHHHHHHhcCCCCceecC
Confidence 00 11110 0 01346788899999999886554 47899999999999999888888874
No 123
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.29 E-value=1.2e-10 Score=104.64 Aligned_cols=50 Identities=30% Similarity=0.361 Sum_probs=42.6
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCCCCCcEEEEEEEEecChHHHHHHcCCC
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF 135 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~~~~eVlVkV~aagl~~~D~~~~~g~~ 135 (280)
||+++..+. .+..++++ +.+.|.+.++||+|+|.++++|+.|++...|.+
T Consensus 1 ~~~~~~~~~-~~~~~~~~-~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~ 50 (306)
T cd08258 1 MKALVKTGP-GPGNVELR-EVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDY 50 (306)
T ss_pred CeeEEEecC-CCCceEEe-ecCCCCCCCCeEEEEEEEEEechhhHHHHcCCC
Confidence 688888663 33558999 999999999999999999999999999887754
No 124
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.16 E-value=6.3e-10 Score=97.37 Aligned_cols=124 Identities=27% Similarity=0.451 Sum_probs=90.6
Q ss_pred EEecChhhHHHHHhCCC--CEEEeCCCCCcccc------CCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCCC----
Q 023556 151 AATSSTRNLEFLKSLGA--DLAIDYTKDNFEDL------PEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVT---- 216 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga--~~vid~~~~~~~~~------~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~~---- 216 (280)
+++.++++.++++++|+ +.++++...++.+. .+++|+++|++| .+..++++++++|+++.+|....
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~ 213 (288)
T smart00829 134 ATAGSPEKRDFLRELGIPDDHIFSSRDLSFADEILRATGGRGVDVVLNSLAGEFLDASLRCLAPGGRFVEIGKRDIRDNS 213 (288)
T ss_pred EEeCCHHHHHHHHHcCCChhheeeCCCccHHHHHHHHhCCCCcEEEEeCCCHHHHHHHHHhccCCcEEEEEcCcCCcccc
Confidence 44557788888888998 78888877665432 147999999988 57889999999999999986431
Q ss_pred CCc-------eEEEE-e---------ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEEE
Q 023556 217 PPG-------FRFVV-T---------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVVI 276 (280)
Q Consensus 217 ~~~-------~~~~~-~---------~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvVv 276 (280)
... ..+.. . ...+.+.++.+++++|.+++... +.|+++++.++++.+..++..+|+|+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ivv 288 (288)
T smart00829 214 QLGMAPFRRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPLPV--TVFPISDVEDAFRYMQQGKHIGKVVL 288 (288)
T ss_pred ccchhhhcCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCcCc--eEEcHHHHHHHHHHHhcCCCcceEeC
Confidence 100 11100 0 01245778888999998876433 58999999999999999887788764
No 125
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=98.93 E-value=3.4e-09 Score=82.89 Aligned_cols=69 Identities=38% Similarity=0.580 Sum_probs=60.4
Q ss_pred CceE-EEecChhhHHHHHhCCCCEEEeCCCCCccccC------CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCC
Q 023556 147 GYDV-AATSSTRNLEFLKSLGADLAIDYTKDNFEDLP------EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 147 G~e~-~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~------~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~ 215 (280)
|..+ +++.+++|+++++++|+++++++++.++.+.+ +++|+||||+| .++.++++++++|+++.+|...
T Consensus 14 G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 14 GAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp TSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred CCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccC
Confidence 4444 67788889999999999999999998876643 47999999999 4899999999999999999987
No 126
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=98.57 E-value=1.1e-06 Score=76.44 Aligned_cols=66 Identities=35% Similarity=0.588 Sum_probs=52.1
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCcccc-----CCCccEEEeCCCC---HHHHHhccccCCEEEEEcCCCC
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDL-----PEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVT 216 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~-----~~g~DvV~d~~g~---~~~~l~~l~~gG~vV~~g~~~~ 216 (280)
+++.++++.++++++|++.++++.+.++... .+++|++||++|. +..++++++++|+++.++....
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~ 236 (271)
T cd05188 163 VTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSG 236 (271)
T ss_pred EEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCCC
Confidence 4556667788888888888888877655432 3689999999873 6789999999999999987653
No 127
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=98.46 E-value=1.7e-06 Score=76.16 Aligned_cols=122 Identities=23% Similarity=0.303 Sum_probs=86.9
Q ss_pred EEecChhhHHHHHhCC-CCEEEeCCCCCccccCCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCC---------
Q 023556 151 AATSSTRNLEFLKSLG-ADLAIDYTKDNFEDLPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTP--------- 217 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lg-a~~vid~~~~~~~~~~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~--------- 217 (280)
+++.++++.++++++| ++.++++..... ..+++|++|||+| .+..++++++++|+++.+|.....
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~ 204 (277)
T cd08255 127 GVDPDAARRELAEALGPADPVAADTADEI--GGRGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLKPLLLGEEFH 204 (277)
T ss_pred EECCCHHHHHHHHHcCCCccccccchhhh--cCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCCccccHHHHH
Confidence 5566788889889999 666665543111 2357999999977 478999999999999999865321
Q ss_pred -CceEEE---Ee-----------ecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhC-CCCeeEEE
Q 023556 218 -PGFRFV---VT-----------SNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETN-KATGKVVI 276 (280)
Q Consensus 218 -~~~~~~---~~-----------~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~-~~~gkvVv 276 (280)
....+. +. ...+.++++++++++|.+++... +.|+++++.+|++.++.+ ....|+++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~--~~~~~~~~~~a~~~~~~~~~~~~k~~~ 277 (277)
T cd08255 205 FKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLEALIT--HRVPFEDAPEAYRLLFEDPPECLKVVL 277 (277)
T ss_pred hccCeEEeecccccccccccccccccccHHHHHHHHHcCCcccccc--CccCHHHHHHHHHHHHcCCccceeeeC
Confidence 000110 00 01257899999999999887644 489999999999999887 34467653
No 128
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=98.45 E-value=5.5e-07 Score=79.86 Aligned_cols=108 Identities=20% Similarity=0.194 Sum_probs=75.0
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCc--cc--cCCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCC--CCCceE
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNF--ED--LPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV--TPPGFR 221 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~--~~--~~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~--~~~~~~ 221 (280)
+++.+++|+++++++|++.++++.+... .+ ..+++|++|||+| .++.++++++++|+++.+|... .+..++
T Consensus 150 ~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~i~ 229 (280)
T TIGR03366 150 AADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALD 229 (280)
T ss_pred EECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCceeeC
Confidence 4456788999999999999998754211 11 1257999999998 4789999999999999999643 111111
Q ss_pred ------------EEEeecHHHHHHHHHHHHCC--CceeecCCCcccchhhH
Q 023556 222 ------------FVVTSNGEVLKKLNPYLESG--KVKPIIDPKGPFPFSQV 258 (280)
Q Consensus 222 ------------~~~~~~~~~l~~l~~ll~~G--~l~~~~~~~~~~~l~~v 258 (280)
.......+++++++++++++ +++.....++.|+|+|+
T Consensus 230 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~ 280 (280)
T TIGR03366 230 PEQVVRRWLTIRGVHNYEPRHLDQAVRFLAANGQRFPFEELVGKPFPLADV 280 (280)
T ss_pred HHHHHhCCcEEEecCCCCHHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence 11122357889999999874 45443344578888864
No 129
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=98.23 E-value=1.8e-06 Score=65.57 Aligned_cols=39 Identities=28% Similarity=0.328 Sum_probs=32.5
Q ss_pred CCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE
Q 023556 111 EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV 150 (280)
Q Consensus 111 ~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~ 150 (280)
||||||||.++|||++|++.+.|... ....+|.++|||+
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~-~~~~~p~i~GhE~ 39 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPP-PPPKFPLILGHEG 39 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSS-STSSSSEES-SEE
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccc-cCCCCCcccccce
Confidence 68999999999999999999999522 3568899999999
No 130
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.64 E-value=0.00022 Score=66.65 Aligned_cols=122 Identities=13% Similarity=0.121 Sum_probs=81.2
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCccccCCCccEEEeCCC---CHHHH-HhccccCCEEEEEcCCCCCCceE-----
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG---QCDRA-VKAIKEGGTVVALTGAVTPPGFR----- 221 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~~g~DvV~d~~g---~~~~~-l~~l~~gG~vV~~g~~~~~~~~~----- 221 (280)
++..++.+++.++.+|++.+ + ..+..+++|+||+|+| .+... ++++++||+++.+|......+..
T Consensus 230 V~d~d~~R~~~A~~~G~~~~-~-----~~e~v~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~~ 303 (413)
T cd00401 230 VTEVDPICALQAAMEGYEVM-T-----MEEAVKEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKEN 303 (413)
T ss_pred EEECChhhHHHHHhcCCEEc-c-----HHHHHcCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHhh
Confidence 44556777788888887433 2 1234468999999999 36665 99999999999999654221111
Q ss_pred ---E--EEeecHH-HHH--HHHHHHHCCCc-eeecCCCcc-----cchh-hHHHHHHHHHhCCCC-eeEEEEe
Q 023556 222 ---F--VVTSNGE-VLK--KLNPYLESGKV-KPIIDPKGP-----FPFS-QVVEAFSYIETNKAT-GKVVIHP 278 (280)
Q Consensus 222 ---~--~~~~~~~-~l~--~l~~ll~~G~l-~~~~~~~~~-----~~l~-~v~~A~~~l~~~~~~-gkvVv~~ 278 (280)
. ......+ .+. +.+.++++|++ ......+|+ ++|+ |+.+++..+.+++.. -|+++.+
T Consensus 304 el~i~g~~~~~~~~~~~~g~aI~LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p 376 (413)
T cd00401 304 AVEVVNIKPQVDRYELPDGRRIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLP 376 (413)
T ss_pred ccEEEEccCCcceEEcCCcchhhhhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECC
Confidence 1 1111112 344 68999999988 544444467 8999 999999999887542 4565543
No 131
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.38 E-value=0.01 Score=56.99 Aligned_cols=97 Identities=16% Similarity=0.256 Sum_probs=65.3
Q ss_pred EEecChhhHHHHHhCCCCEE-EeCCCCC-------------c--------cccCCCccEEEeCCCC---------HHHHH
Q 023556 151 AATSSTRNLEFLKSLGADLA-IDYTKDN-------------F--------EDLPEKFDVVYDAIGQ---------CDRAV 199 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~v-id~~~~~-------------~--------~~~~~g~DvV~d~~g~---------~~~~l 199 (280)
+.+.++++++.++++|++.+ +|..+++ + .+..+++|+||+|+|. .++++
T Consensus 193 a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v 272 (509)
T PRK09424 193 AFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMV 272 (509)
T ss_pred EEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHH
Confidence 67888999999999999954 6654321 1 1112579999999982 48999
Q ss_pred hccccCCEEEEEcCCC-CC--Cce---EEEE---------eec-HHHHHHHHHHHHCCCceeec
Q 023556 200 KAIKEGGTVVALTGAV-TP--PGF---RFVV---------TSN-GEVLKKLNPYLESGKVKPII 247 (280)
Q Consensus 200 ~~l~~gG~vV~~g~~~-~~--~~~---~~~~---------~~~-~~~l~~l~~ll~~G~l~~~~ 247 (280)
+.+++||++|.++... .. ... .+.. ... .+....+.+++.++.++...
T Consensus 273 ~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n~P~~~p~~As~lla~~~i~l~~ 336 (509)
T PRK09424 273 ASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTDLPSRLPTQSSQLYGTNLVNLLK 336 (509)
T ss_pred HhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeCCCchhHHHHHHHHHHhCCccHHH
Confidence 9999999999998742 11 111 1111 111 24444688899998876543
No 132
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=93.06 E-value=0.47 Score=41.71 Aligned_cols=124 Identities=14% Similarity=0.173 Sum_probs=68.2
Q ss_pred EEecChhhHHHHHh----CCCCEEEeCCCCCcccc---CCCccEEEeCC-C--------CHHHHHhccccCCEEEEEcCC
Q 023556 151 AATSSTRNLEFLKS----LGADLAIDYTKDNFEDL---PEKFDVVYDAI-G--------QCDRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 151 ~~~~s~~~~~~l~~----lga~~vid~~~~~~~~~---~~g~DvV~d~~-g--------~~~~~l~~l~~gG~vV~~g~~ 214 (280)
+++.+++.++.+++ +|.+.+ .....++.+. .+.+|+|+... . .++.+.++|++||+++..+..
T Consensus 107 gvD~s~~~l~~A~~~~~~~g~~~v-~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 107 GVDMTPEMLAKARANARKAGYTNV-EFRLGEIEALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred EECCCHHHHHHHHHHHHHcCCCCE-EEEEcchhhCCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 56677888887765 343322 1111222221 24799998543 1 378999999999999987544
Q ss_pred CCCC---ce----EEEE--eecHHHHHHHHHHHHC-CCceeecCCCcccchhhHHHHHHHH--HhCCCCeeEE
Q 023556 215 VTPP---GF----RFVV--TSNGEVLKKLNPYLES-GKVKPIIDPKGPFPFSQVVEAFSYI--ETNKATGKVV 275 (280)
Q Consensus 215 ~~~~---~~----~~~~--~~~~~~l~~l~~ll~~-G~l~~~~~~~~~~~l~~v~~A~~~l--~~~~~~gkvV 275 (280)
.... .+ .+.. .......+++.+++++ |-....+.....+.++++.++++.+ ..++..++.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 258 (272)
T PRK11873 186 LRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQPKREYRIPDAREFLEDWGIAPGRQLDGYI 258 (272)
T ss_pred ccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEeccceecccHHHHHHHhccccccccCceE
Confidence 3211 00 0000 0001123456666665 4333223222468899999999988 5555444444
No 133
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=91.42 E-value=2.1 Score=35.68 Aligned_cols=111 Identities=20% Similarity=0.157 Sum_probs=67.6
Q ss_pred CCCCCcEEEEEEEEe-cChHHHHHHcCCCCCCCCCCCcccCceEEEecChhhHHHHHh----CCCCE--EEeCCCCCccc
Q 023556 108 QVKEDQVLIKVVAAA-LNPVDGKRRQGKFKATDSPLPTVPGYDVAATSSTRNLEFLKS----LGADL--AIDYTKDNFED 180 (280)
Q Consensus 108 ~~~~~eVlVkV~aag-l~~~D~~~~~g~~~~~~~~~P~i~G~e~~~~~s~~~~~~l~~----lga~~--vid~~~~~~~~ 180 (280)
.|.+|++++.|-+.+ -=..+|. +.+.. |+=++...+++..+..++ +|.+. ++....+..-.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a-~~~p~-----------~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWA-LAGPS-----------GRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP 98 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHH-HhCCC-----------ceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc
Confidence 577899999986543 2223343 22211 222366777777776644 78774 44443333322
Q ss_pred cCCCccEEEeCCC-C----HHHHHhccccCCEEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCc
Q 023556 181 LPEKFDVVYDAIG-Q----CDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKV 243 (280)
Q Consensus 181 ~~~g~DvV~d~~g-~----~~~~l~~l~~gG~vV~~g~~~~~~~~~~~~~~~~~~l~~l~~ll~~G~l 243 (280)
....+|.+|-.-| . ++.++..|++||++|.-.. .-+-+..+++++++-..
T Consensus 99 ~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nai-------------tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 99 DLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAI-------------TLETLAKALEALEQLGG 153 (187)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEee-------------cHHHHHHHHHHHHHcCC
Confidence 2347999997655 2 7899999999999996432 23556666666665444
No 134
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.28 E-value=0.92 Score=43.80 Aligned_cols=65 Identities=22% Similarity=0.466 Sum_probs=47.2
Q ss_pred EEecChhhHHHHHhCCCCEE-EeCCCC-------------C--------ccccCCCccEEEeCC---C--C----HHHHH
Q 023556 151 AATSSTRNLEFLKSLGADLA-IDYTKD-------------N--------FEDLPEKFDVVYDAI---G--Q----CDRAV 199 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~v-id~~~~-------------~--------~~~~~~g~DvV~d~~---g--~----~~~~l 199 (280)
+.+.++++++.++++|++.+ ++..+. + +.+..+++|+||+|+ | . .++.+
T Consensus 192 v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv 271 (511)
T TIGR00561 192 AFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMV 271 (511)
T ss_pred EEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHH
Confidence 56788889999999998763 332110 1 112246899999998 5 1 47889
Q ss_pred hccccCCEEEEEcCCC
Q 023556 200 KAIKEGGTVVALTGAV 215 (280)
Q Consensus 200 ~~l~~gG~vV~~g~~~ 215 (280)
+.+++|+.+|+++...
T Consensus 272 ~~MKpGsvIVDlA~d~ 287 (511)
T TIGR00561 272 DSMKAGSVIVDLAAEQ 287 (511)
T ss_pred hhCCCCCEEEEeeeCC
Confidence 9999999999996654
No 135
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=87.72 E-value=0.53 Score=25.16 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=13.6
Q ss_pred eeEEEEcccCCCccEEEeeeccCCCC
Q 023556 84 MKAWLYGEYGGVDVLKFDEKVTVPQV 109 (280)
Q Consensus 84 mka~~~~~~g~~~~l~l~~~~~~p~~ 109 (280)
|||++|.+.++ ++++ ++|.|.+
T Consensus 1 MkAv~y~G~~~---v~ve-~VpdP~I 22 (23)
T PF13823_consen 1 MKAVVYHGPKD---VRVE-EVPDPKI 22 (23)
T ss_dssp -EEEEEEETTE---EEEE-EE----S
T ss_pred CcceEEeCCCc---eEEE-ECCCccc
Confidence 89999987654 7888 8887764
No 136
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=82.31 E-value=17 Score=33.48 Aligned_cols=98 Identities=26% Similarity=0.305 Sum_probs=59.6
Q ss_pred CCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCce-EEEecChhhHHHHH----hCCCCE--EEeCCCCCccc
Q 023556 108 QVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYD-VAATSSTRNLEFLK----SLGADL--AIDYTKDNFED 180 (280)
Q Consensus 108 ~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e-~~~~~s~~~~~~l~----~lga~~--vid~~~~~~~~ 180 (280)
.|.+|+.++.+.|+.=..+-........ .|.- ++.+.++.++..++ .+|... ++..++..+..
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~----------~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~ 222 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMEN----------EGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAE 222 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCC----------CCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccc
Confidence 5778888888877765544332221111 1222 37777888877664 489874 44444433333
Q ss_pred cC---CCccEEE-e--CCC-C---------------------------HHHHHhccccCCEEEEEcCCC
Q 023556 181 LP---EKFDVVY-D--AIG-Q---------------------------CDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 181 ~~---~g~DvV~-d--~~g-~---------------------------~~~~l~~l~~gG~vV~~g~~~ 215 (280)
.. ..||.|+ | |+| + +..+++.|++||++|.....-
T Consensus 223 ~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 223 LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 22 2488775 4 555 1 478889999999999876544
No 137
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=81.76 E-value=4.2 Score=36.44 Aligned_cols=65 Identities=9% Similarity=0.227 Sum_probs=45.2
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCccccCCCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCC
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP 218 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~ 218 (280)
+...++++.+.++++|+..+ .+ +++.+...++|+||+|++ .-+..++.+++++.+|+++..+...
T Consensus 180 v~~r~~~~~~~~~~~G~~~~-~~--~~l~~~l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggt 247 (296)
T PRK08306 180 VGARKSAHLARITEMGLSPF-HL--SELAEEVGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGT 247 (296)
T ss_pred EEECCHHHHHHHHHcCCeee-cH--HHHHHHhCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCc
Confidence 45556666677777776532 22 233344578999999987 2367788899999999998877543
No 138
>PLN02494 adenosylhomocysteinase
Probab=80.67 E-value=2.7 Score=40.14 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=29.1
Q ss_pred CCCccEEEeCCC--C--HHHHHhccccCCEEEEEcCCC
Q 023556 182 PEKFDVVYDAIG--Q--CDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 182 ~~g~DvV~d~~g--~--~~~~l~~l~~gG~vV~~g~~~ 215 (280)
.+..|+|+.|+| . ....++.+++||.++.+|...
T Consensus 307 l~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~ 344 (477)
T PLN02494 307 VSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFD 344 (477)
T ss_pred HhhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCC
Confidence 467899999998 2 378999999999999998854
No 139
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=78.10 E-value=4.9 Score=32.20 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=32.1
Q ss_pred CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCceEEEEeecHHH
Q 023556 183 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEV 230 (280)
Q Consensus 183 ~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~~~~~~~~~~~ 230 (280)
-|+|+|+||+| ..+.+...|+.|-+-|.++.........+.+..+.+.
T Consensus 86 ~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~~~~t~V~GvN~~~ 136 (149)
T smart00846 86 LGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKDADKTFVYGVNHDE 136 (149)
T ss_pred cCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCCCCceEEEeechHH
Confidence 48999999999 3456667888887778777765433334555544443
No 140
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=71.86 E-value=7.2 Score=32.58 Aligned_cols=67 Identities=24% Similarity=0.317 Sum_probs=41.2
Q ss_pred cCceE-EEecChhhHHHHHh---CCCCEEEeCCCCCccccCCCccEEEeCCCC------------HHHHHhccccC--CE
Q 023556 146 PGYDV-AATSSTRNLEFLKS---LGADLAIDYTKDNFEDLPEKFDVVYDAIGQ------------CDRAVKAIKEG--GT 207 (280)
Q Consensus 146 ~G~e~-~~~~s~~~~~~l~~---lga~~vid~~~~~~~~~~~g~DvV~d~~g~------------~~~~l~~l~~g--G~ 207 (280)
=|||+ +.++++.|....+. +..| ++|.. ...+.+.|+|+||++.|. .+..+..|+.- -|
T Consensus 23 RGHeVTAivRn~~K~~~~~~~~i~q~D-ifd~~--~~a~~l~g~DaVIsA~~~~~~~~~~~~~k~~~~li~~l~~agv~R 99 (211)
T COG2910 23 RGHEVTAIVRNASKLAARQGVTILQKD-IFDLT--SLASDLAGHDAVISAFGAGASDNDELHSKSIEALIEALKGAGVPR 99 (211)
T ss_pred CCCeeEEEEeChHhccccccceeeccc-ccChh--hhHhhhcCCceEEEeccCCCCChhHHHHHHHHHHHHHHhhcCCee
Confidence 37888 77777777654322 1121 33322 223456899999999871 23456666663 48
Q ss_pred EEEEcCCC
Q 023556 208 VVALTGAV 215 (280)
Q Consensus 208 vV~~g~~~ 215 (280)
++.+|+.+
T Consensus 100 llVVGGAG 107 (211)
T COG2910 100 LLVVGGAG 107 (211)
T ss_pred EEEEcCcc
Confidence 88888877
No 141
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=69.75 E-value=29 Score=28.74 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=48.5
Q ss_pred EEecChhhHHHHH----hCC-CCE--EEeCCCCCcccc-CCCccEEEeCCC------CHHHHHhccccCCEEEEEcCCCC
Q 023556 151 AATSSTRNLEFLK----SLG-ADL--AIDYTKDNFEDL-PEKFDVVYDAIG------QCDRAVKAIKEGGTVVALTGAVT 216 (280)
Q Consensus 151 ~~~~s~~~~~~l~----~lg-a~~--vid~~~~~~~~~-~~g~DvV~d~~g------~~~~~l~~l~~gG~vV~~g~~~~ 216 (280)
+++.+++..+.++ .+| .+. ++..+..++... ...+|.||...+ .++.+.++|++||+++....
T Consensus 70 avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~--- 146 (198)
T PRK00377 70 AVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI--- 146 (198)
T ss_pred EEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee---
Confidence 5667777766554 356 332 222222222222 257999998654 26788889999999985321
Q ss_pred CCceEEEEeecHHHHHHHHHHHHCCCce
Q 023556 217 PPGFRFVVTSNGEVLKKLNPYLESGKVK 244 (280)
Q Consensus 217 ~~~~~~~~~~~~~~l~~l~~ll~~G~l~ 244 (280)
.-+.++++.+.+++..+.
T Consensus 147 ----------~~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 147 ----------LLETVNNALSALENIGFN 164 (198)
T ss_pred ----------cHHHHHHHHHHHHHcCCC
Confidence 235567777777654443
No 142
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=69.11 E-value=15 Score=31.30 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=45.1
Q ss_pred CCCcccCceEE-EecChhhHHHHHh-------CCCCEEEeCCCCCccccC-CCccEEEeCCC---------CHHHHHhcc
Q 023556 141 PLPTVPGYDVA-ATSSTRNLEFLKS-------LGADLAIDYTKDNFEDLP-EKFDVVYDAIG---------QCDRAVKAI 202 (280)
Q Consensus 141 ~~P~i~G~e~~-~~~s~~~~~~l~~-------lga~~vid~~~~~~~~~~-~g~DvV~d~~g---------~~~~~l~~l 202 (280)
-+|.++|..+. .+.++.-.+++.. +.....+....++..+.. +.+|.|+.+.+ .++..-++|
T Consensus 93 fy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlL 172 (252)
T KOG4300|consen 93 FYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLL 172 (252)
T ss_pred cccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhc
Confidence 45677888884 4444443344432 233333444444544332 56899988654 267888899
Q ss_pred ccCCEEEEEcC
Q 023556 203 KEGGTVVALTG 213 (280)
Q Consensus 203 ~~gG~vV~~g~ 213 (280)
+|||+++.+.-
T Consensus 173 RpgG~iifiEH 183 (252)
T KOG4300|consen 173 RPGGRIIFIEH 183 (252)
T ss_pred CCCcEEEEEec
Confidence 99999998843
No 143
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=67.84 E-value=9.7 Score=36.02 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=28.6
Q ss_pred CCCccEEEeCCCC---HH-HHHhccccCCEEEEEcCCC
Q 023556 182 PEKFDVVYDAIGQ---CD-RAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 182 ~~g~DvV~d~~g~---~~-~~l~~l~~gG~vV~~g~~~ 215 (280)
.+++|+||+|+|. +. ..+..+++|+.++.+|...
T Consensus 265 l~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 265 AELGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred HhCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 4689999999982 44 6889999999999998766
No 144
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=65.99 E-value=7.8 Score=27.11 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=36.0
Q ss_pred EEecChhhHHHHHhCCCCE---EEeCCCCCccccCCCccEEEeCCC---------CHHHHHhccccCCEEEE
Q 023556 151 AATSSTRNLEFLKSLGADL---AIDYTKDNFEDLPEKFDVVYDAIG---------QCDRAVKAIKEGGTVVA 210 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~---vid~~~~~~~~~~~g~DvV~d~~g---------~~~~~l~~l~~gG~vV~ 210 (280)
+++.+++..+.+++..... ++..+..++.-..+.+|+|+.... .++++.++|++||+++.
T Consensus 24 ~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 24 GIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 6677777777776632211 333332333212267999987644 26899999999999873
No 145
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=63.72 E-value=14 Score=32.16 Aligned_cols=65 Identities=23% Similarity=0.388 Sum_probs=43.9
Q ss_pred EEecChhhHHHHHh----CCCCEEEeCCCCCccccC---CCccEEEeCCC---------CHHHHHhccccCCEEEEEcCC
Q 023556 151 AATSSTRNLEFLKS----LGADLAIDYTKDNFEDLP---EKFDVVYDAIG---------QCDRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 151 ~~~~s~~~~~~l~~----lga~~vid~~~~~~~~~~---~g~DvV~d~~g---------~~~~~l~~l~~gG~vV~~g~~ 214 (280)
+++.|+.-++.+++ .|... +.+-..+.+... ..||+|.-+.| .+.++.++|+|||+++.+...
T Consensus 80 ~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 80 GLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred EEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 78888887776654 34332 333223333322 57899988777 278899999999999998766
Q ss_pred CC
Q 023556 215 VT 216 (280)
Q Consensus 215 ~~ 216 (280)
..
T Consensus 159 ~p 160 (238)
T COG2226 159 KP 160 (238)
T ss_pred CC
Confidence 53
No 146
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=63.51 E-value=6.6 Score=31.54 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=29.1
Q ss_pred CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCC-ceEEEE
Q 023556 183 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPP-GFRFVV 224 (280)
Q Consensus 183 ~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~-~~~~~~ 224 (280)
-++|+|+||+| ..+.+...+..|-+-|.++...... ...+.+
T Consensus 87 ~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~~~~~t~V~ 132 (151)
T PF00044_consen 87 LGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKDDADPTFVM 132 (151)
T ss_dssp HTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SSSSSEEE-T
T ss_pred ccccEEEeccccceecccccccccccccceeeccccccccCCeEEe
Confidence 48999999999 4567777888887777777666443 444433
No 147
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=62.30 E-value=15 Score=33.96 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=26.6
Q ss_pred CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCC
Q 023556 183 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 183 ~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~ 215 (280)
-|+|+|+||+| ..+.+...|+.|.+-|.+....
T Consensus 103 ~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~ 138 (361)
T PTZ00434 103 LGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPA 138 (361)
T ss_pred cCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCC
Confidence 38999999999 5678888999887777775554
No 148
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=61.27 E-value=18 Score=32.92 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=28.4
Q ss_pred CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCC
Q 023556 183 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 183 ~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~ 215 (280)
.++|+||+|+| ..+.+...++.|++.|.++...
T Consensus 88 ~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~ 123 (325)
T TIGR01532 88 LGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPG 123 (325)
T ss_pred cCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCC
Confidence 48999999999 4678888999999999998764
No 149
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=60.94 E-value=18 Score=34.08 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=28.6
Q ss_pred cCCCccEEEeCCCC---HH-HHHhccccCCEEEEEcCCC
Q 023556 181 LPEKFDVVYDAIGQ---CD-RAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 181 ~~~g~DvV~d~~g~---~~-~~l~~l~~gG~vV~~g~~~ 215 (280)
..++.|+||+++|. +. ..+..+++|+.++..|...
T Consensus 247 al~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 247 AAKIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred HHhcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 34678999999982 44 5889999999999998765
No 150
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=60.54 E-value=41 Score=24.75 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=36.9
Q ss_pred EEecChhhHHHHHh----CCCC--EEEeCCCCC-ccccCCCccEEEeCCC------CHHHHHhccccCCEEEEEc
Q 023556 151 AATSSTRNLEFLKS----LGAD--LAIDYTKDN-FEDLPEKFDVVYDAIG------QCDRAVKAIKEGGTVVALT 212 (280)
Q Consensus 151 ~~~~s~~~~~~l~~----lga~--~vid~~~~~-~~~~~~g~DvV~d~~g------~~~~~l~~l~~gG~vV~~g 212 (280)
+++.++...+.+++ ++.. .++..+-.. +....+.+|+|+...+ .++.+.+.|++||+++.-.
T Consensus 48 ~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 48 AIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 55566666665543 4433 233222111 1122358999997653 2688999999999998653
No 151
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=58.87 E-value=23 Score=30.12 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=34.6
Q ss_pred HHHhCCCCEEEeCCCCCcc--ccCCCccEEEeCCC--CH-HHHHhccccCCEEEEEcC
Q 023556 161 FLKSLGADLAIDYTKDNFE--DLPEKFDVVYDAIG--QC-DRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 161 ~l~~lga~~vid~~~~~~~--~~~~g~DvV~d~~g--~~-~~~l~~l~~gG~vV~~g~ 213 (280)
.++.+|-+.|.......+. .....+|.|+-+.+ .+ +..++.|++||++|.--+
T Consensus 113 ~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 113 NLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred HHHHcCCCceEEEECCcccCCCCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence 3556887544322222211 12268999998766 34 688999999999998866
No 152
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=58.85 E-value=19 Score=33.05 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=26.4
Q ss_pred CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCC
Q 023556 183 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 183 ~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~ 215 (280)
.++|+||+|+| ..+.+-..++.|.+.|.+....
T Consensus 88 ~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~ 123 (343)
T PRK07729 88 LGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPG 123 (343)
T ss_pred cCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCC
Confidence 48999999999 3467777788888888888554
No 153
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=57.15 E-value=22 Score=33.31 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=27.9
Q ss_pred CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCC
Q 023556 183 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVT 216 (280)
Q Consensus 183 ~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~ 216 (280)
.|+|+||+|+| .-+.+...++.|.+.|.+.....
T Consensus 149 ~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~ 185 (395)
T PLN03096 149 LGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK 185 (395)
T ss_pred cCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCC
Confidence 48999999999 45677788889999999987643
No 154
>COG0081 RplA Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]
Probab=54.84 E-value=11 Score=32.47 Aligned_cols=92 Identities=22% Similarity=0.217 Sum_probs=59.1
Q ss_pred CCCcccCceE--EEecChhhHHHHHhCCCCEEEeCCCCCcccc---C--CCccEEEeCCCC---HHHHHhccccCCEEEE
Q 023556 141 PLPTVPGYDV--AATSSTRNLEFLKSLGADLAIDYTKDNFEDL---P--EKFDVVYDAIGQ---CDRAVKAIKEGGTVVA 210 (280)
Q Consensus 141 ~~P~i~G~e~--~~~~s~~~~~~l~~lga~~vid~~~~~~~~~---~--~g~DvV~d~~g~---~~~~l~~l~~gG~vV~ 210 (280)
.+|.-.|-+. ++....++.+.+++.|+|.++. +++.+. . ..||++|-+... +...-+.|.|.|.+-.
T Consensus 64 vLP~g~gk~vrV~Vfa~g~~~~~A~~AGad~Vg~---edl~e~ik~~r~~~fD~~IAtpdmM~~v~~LG~vLGPRGlMP~ 140 (228)
T COG0081 64 VLPNGTGKTVRVAVFADGEKAEEAKAAGADYVGG---EDLIELIKNGRAKDFDVFIATPDMMPLVGKLGKVLGPRGLMPN 140 (228)
T ss_pred ECCCCCCCccEEEEEcChHhHHHHHHcCCCEecH---HHHHHHHhCcchhcCCEEEECchHHHHHHHHhhhcCCCCCCCC
Confidence 5777778887 6667888999999999999876 233332 2 468999988762 4455666677665422
Q ss_pred EcCCCCCCceEEEEeecHHHHHHHHHHHHCCCceee
Q 023556 211 LTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPI 246 (280)
Q Consensus 211 ~g~~~~~~~~~~~~~~~~~~l~~l~~ll~~G~l~~~ 246 (280)
--.. ....++..+++-+..|.+...
T Consensus 141 Pk~g-----------Tvt~Dv~~av~~~K~g~v~~R 165 (228)
T COG0081 141 PKTG-----------TVTDDVAKAVEELKKGTVEFR 165 (228)
T ss_pred CCCC-----------CCCcCHHHHHHHHhcCcEEEE
Confidence 1000 022466666666677766543
No 155
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=54.10 E-value=41 Score=24.44 Aligned_cols=64 Identities=27% Similarity=0.361 Sum_probs=38.3
Q ss_pred CceE-EEecChhhHHHHHh-C---CCCEEEeCCCCCc---cccCCCccEEEeCC-C------C------HHHHHhccccC
Q 023556 147 GYDV-AATSSTRNLEFLKS-L---GADLAIDYTKDNF---EDLPEKFDVVYDAI-G------Q------CDRAVKAIKEG 205 (280)
Q Consensus 147 G~e~-~~~~s~~~~~~l~~-l---ga~~vid~~~~~~---~~~~~g~DvV~d~~-g------~------~~~~l~~l~~g 205 (280)
|.++ +++.+++-.+.+++ . +...-+.....++ .+..+++|+|+... . . ++.+.+.|+||
T Consensus 25 ~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 104 (112)
T PF12847_consen 25 GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPG 104 (112)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCC
Confidence 3444 66777777776654 2 2211111112233 22346799999877 3 1 57788899999
Q ss_pred CEEEE
Q 023556 206 GTVVA 210 (280)
Q Consensus 206 G~vV~ 210 (280)
|+++.
T Consensus 105 G~lvi 109 (112)
T PF12847_consen 105 GRLVI 109 (112)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 99985
No 156
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=53.57 E-value=30 Score=32.01 Aligned_cols=65 Identities=20% Similarity=0.349 Sum_probs=40.1
Q ss_pred EEecChhhHHHHHh-CCCCEEEeCCC-CCccccCCCccEEEeCC---CC------HHHHHhccccCCEEEEEcCCC
Q 023556 151 AATSSTRNLEFLKS-LGADLAIDYTK-DNFEDLPEKFDVVYDAI---GQ------CDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 151 ~~~~s~~~~~~l~~-lga~~vid~~~-~~~~~~~~g~DvV~d~~---g~------~~~~l~~l~~gG~vV~~g~~~ 215 (280)
+.+.++++++.+.. +|......+.+ +.+.+.++++|+||+|+ |. ....++.+++++.+|+++...
T Consensus 195 v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~ 270 (370)
T TIGR00518 195 ILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQ 270 (370)
T ss_pred EEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCC
Confidence 34445555555543 45432222222 12334457899999997 31 378888999999999997554
No 157
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=53.12 E-value=1e+02 Score=26.30 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=39.7
Q ss_pred EEecChhhHHHHHhCC-CCEEEeCCCCCccccCCCccEEEeCCC---------CHHHHHhccccCCEEEEEcCC
Q 023556 151 AATSSTRNLEFLKSLG-ADLAIDYTKDNFEDLPEKFDVVYDAIG---------QCDRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lg-a~~vid~~~~~~~~~~~g~DvV~d~~g---------~~~~~l~~l~~gG~vV~~g~~ 214 (280)
+++.+++.++.+++.. ...++..+.+++.-..+.+|+|+.... .+..+.++|++||.++.....
T Consensus 69 ~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 69 ALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred EEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 6777788888777643 222332222222111246999987543 267888899999999977543
No 158
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=51.22 E-value=77 Score=28.33 Aligned_cols=64 Identities=20% Similarity=0.339 Sum_probs=42.8
Q ss_pred CceE-EEecChhh-HHHHHhCCCCEEEeCCCCCccccCCCccEEEeCCCC---H-------HHHHhccccCCEEEEEcCC
Q 023556 147 GYDV-AATSSTRN-LEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ---C-------DRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 147 G~e~-~~~~s~~~-~~~l~~lga~~vid~~~~~~~~~~~g~DvV~d~~g~---~-------~~~l~~l~~gG~vV~~g~~ 214 (280)
||++ +...++++ .++++..|+...- +..+.....|+||-|++. + +-.++.+++|..+|++...
T Consensus 23 G~~v~v~~r~~~ka~~~~~~~Ga~~a~-----s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTi 97 (286)
T COG2084 23 GHEVTVYNRTPEKAAELLAAAGATVAA-----SPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTI 97 (286)
T ss_pred CCEEEEEeCChhhhhHHHHHcCCcccC-----CHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCC
Confidence 5666 66677788 7888888876431 223445678899888772 2 2344556778888888766
Q ss_pred C
Q 023556 215 V 215 (280)
Q Consensus 215 ~ 215 (280)
.
T Consensus 98 s 98 (286)
T COG2084 98 S 98 (286)
T ss_pred C
Confidence 5
No 159
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=50.82 E-value=80 Score=27.97 Aligned_cols=49 Identities=18% Similarity=0.140 Sum_probs=35.1
Q ss_pred CCccEEEeCCC------CHHHHHhccccCCEEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcee
Q 023556 183 EKFDVVYDAIG------QCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKP 245 (280)
Q Consensus 183 ~g~DvV~d~~g------~~~~~l~~l~~gG~vV~~g~~~~~~~~~~~~~~~~~~l~~l~~ll~~G~l~~ 245 (280)
+++|+|+.... .+..+.++|++||.++..|.. .+...++.+.++++ ++.
T Consensus 224 ~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~-------------~~~~~~v~~~~~~~-f~~ 278 (288)
T TIGR00406 224 GKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL-------------ETQAQSVCDAYEQG-FTV 278 (288)
T ss_pred CCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc-------------HhHHHHHHHHHHcc-Cce
Confidence 57999997654 256778999999999976542 35566777777766 543
No 160
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=50.55 E-value=55 Score=26.12 Aligned_cols=32 Identities=25% Similarity=0.294 Sum_probs=25.0
Q ss_pred CCccEEEeCCC---------CHHHHHhccccCCEEEEEcCC
Q 023556 183 EKFDVVYDAIG---------QCDRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 183 ~g~DvV~d~~g---------~~~~~l~~l~~gG~vV~~g~~ 214 (280)
+.+|+|+-..+ .++++.++|+|||+++.+...
T Consensus 43 ~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 43 CEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred CCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 46899987655 167889999999999877544
No 161
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=49.94 E-value=28 Score=29.98 Aligned_cols=65 Identities=20% Similarity=0.229 Sum_probs=37.2
Q ss_pred EEecChhhHHHHHh----CCCC--EEEeCCCCCccccCCCccEEEeCCC---------CHHHHHhccccCCEEEEEcCCC
Q 023556 151 AATSSTRNLEFLKS----LGAD--LAIDYTKDNFEDLPEKFDVVYDAIG---------QCDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 151 ~~~~s~~~~~~l~~----lga~--~vid~~~~~~~~~~~g~DvV~d~~g---------~~~~~l~~l~~gG~vV~~g~~~ 215 (280)
+++.+++-++.+++ .|.. ..+..+.+++.-.-+.+|+|.-+-| .+.+..++|+|||+++.+....
T Consensus 77 ~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 77 GVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp EEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred EecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence 67788887777754 3332 1222222222111257999998776 2688999999999998875433
No 162
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=49.53 E-value=1.3e+02 Score=25.97 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=33.1
Q ss_pred CccEEEeCCC------CHHHHHhccccCCEEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCce
Q 023556 184 KFDVVYDAIG------QCDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVK 244 (280)
Q Consensus 184 g~DvV~d~~g------~~~~~l~~l~~gG~vV~~g~~~~~~~~~~~~~~~~~~l~~l~~ll~~G~l~ 244 (280)
.+|+|+-+.. .+..+.++|++||+++..|... ...+.+.+.+++..+.
T Consensus 179 ~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~-------------~~~~~v~~~l~~~Gf~ 232 (250)
T PRK00517 179 KADVIVANILANPLLELAPDLARLLKPGGRLILSGILE-------------EQADEVLEAYEEAGFT 232 (250)
T ss_pred CcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcH-------------hhHHHHHHHHHHCCCE
Confidence 5899987654 2578889999999999865432 3455666666655454
No 163
>PRK14967 putative methyltransferase; Provisional
Probab=49.43 E-value=1.6e+02 Score=24.77 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=29.1
Q ss_pred HHHHhccccCCEEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHH
Q 023556 196 DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVV 259 (280)
Q Consensus 196 ~~~l~~l~~gG~vV~~g~~~~~~~~~~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~ 259 (280)
..+.+.|++||+++.+.... ..+.+++++++++.+.......+.+++....
T Consensus 143 ~~a~~~Lk~gG~l~~~~~~~-------------~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 193 (223)
T PRK14967 143 DAAPALLAPGGSLLLVQSEL-------------SGVERTLTRLSEAGLDAEVVASQWIPFGPVL 193 (223)
T ss_pred HHHHHhcCCCcEEEEEEecc-------------cCHHHHHHHHHHCCCCeEEEEeeccCccHHH
Confidence 45778999999998653221 1234566666665554433222355665543
No 164
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=48.43 E-value=93 Score=25.91 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=35.6
Q ss_pred EEecChhhHHHHH----hCCCC---EEEeCCCCCccccCCCccEEEeCCC--C-HHHHHhccccCCEEEEEc
Q 023556 151 AATSSTRNLEFLK----SLGAD---LAIDYTKDNFEDLPEKFDVVYDAIG--Q-CDRAVKAIKEGGTVVALT 212 (280)
Q Consensus 151 ~~~~s~~~~~~l~----~lga~---~vid~~~~~~~~~~~g~DvV~d~~g--~-~~~~l~~l~~gG~vV~~g 212 (280)
.++.+++-.+.++ ..|.. .++..+..+.....+.+|+|+-+.. . .+..++.|++||+++...
T Consensus 102 ~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 102 TVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCcchhhHHHHHhcCcCcEEEEEE
Confidence 4555655554443 35532 2333222221112357999987644 2 467789999999998643
No 165
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=48.13 E-value=38 Score=30.96 Aligned_cols=33 Identities=36% Similarity=0.465 Sum_probs=27.5
Q ss_pred CccEEEeCCC---CHHHHHhccccCCEEEEEcCCCC
Q 023556 184 KFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVT 216 (280)
Q Consensus 184 g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~ 216 (280)
|+|+||+|+| .-+.+-..++.|.+.|.+.....
T Consensus 89 gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~ 124 (331)
T PRK15425 89 GVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSK 124 (331)
T ss_pred CCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCC
Confidence 8999999999 45677888888989999887643
No 166
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=47.85 E-value=31 Score=31.59 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=26.5
Q ss_pred CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCC
Q 023556 183 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 183 ~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~ 215 (280)
+|+|+||+|+| ..+.+-..+..|.+.|.+....
T Consensus 87 ~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~ 122 (334)
T PRK08955 87 SGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPV 122 (334)
T ss_pred cCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCC
Confidence 48999999999 4567777888888888887663
No 167
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=47.80 E-value=60 Score=26.89 Aligned_cols=61 Identities=28% Similarity=0.437 Sum_probs=37.0
Q ss_pred EEecChhhHHHHHh----CCCCE--EEeCCCCCccccCCCccEEEeCCC-----CHHHHHhccccCCEEEEEc
Q 023556 151 AATSSTRNLEFLKS----LGADL--AIDYTKDNFEDLPEKFDVVYDAIG-----QCDRAVKAIKEGGTVVALT 212 (280)
Q Consensus 151 ~~~~s~~~~~~l~~----lga~~--vid~~~~~~~~~~~g~DvV~d~~g-----~~~~~l~~l~~gG~vV~~g 212 (280)
+++.+++..+++++ .|.+. ++..+-.++.. .+.+|+|+-... .+..+.++|++||+++.+-
T Consensus 74 giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 74 LVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAVASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred EEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 55566666655543 55543 22222222222 357999996432 2577889999999999773
No 168
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=47.78 E-value=2e+02 Score=25.61 Aligned_cols=109 Identities=24% Similarity=0.309 Sum_probs=60.4
Q ss_pred EEecChhhHH-HHHhCCCCEEEeCCCCCccccC--CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCCCCCceEEEE
Q 023556 151 AATSSTRNLE-FLKSLGADLAIDYTKDNFEDLP--EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAVTPPGFRFVV 224 (280)
Q Consensus 151 ~~~~s~~~~~-~l~~lga~~vid~~~~~~~~~~--~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~~~~~~~~~~ 224 (280)
+.+.++++.+ +++++|...++ .++.+.+ ..+|+|+.|+. ..+.++++|+.|=.++. . +|..
T Consensus 35 v~d~~~~~a~~~a~~~~~~~~~----~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~-E---KPla----- 101 (342)
T COG0673 35 VVDRDPERAEAFAEEFGIAKAY----TDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLC-E---KPLA----- 101 (342)
T ss_pred EecCCHHHHHHHHHHcCCCccc----CCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEE-c---CCCC-----
Confidence 4457777764 55678876332 2344443 45999999987 47788888877665443 1 1211
Q ss_pred eecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCCCeeEE
Q 023556 225 TSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKATGKVV 275 (280)
Q Consensus 225 ~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~~gkvV 275 (280)
.+-+..+++.++.++..++..+.. .+-+...-..++.+-+....|+++
T Consensus 102 -~t~~ea~~l~~~a~~~~~~l~v~~--~~Rf~p~~~~~k~li~~g~lG~v~ 149 (342)
T COG0673 102 -LTLEEAEELVELARKAGVKLMVGF--NRRFDPAVQALKELIDSGALGEVV 149 (342)
T ss_pred -CCHHHHHHHHHHHHHcCCceeeeh--hhhcCHHHHHHHHHHhcCCcCceE
Confidence 134666677777776655544443 344443333333333333335543
No 169
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=47.30 E-value=1e+02 Score=25.93 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=23.4
Q ss_pred CCccEEEeCCC---CHHHHHhccccCCEEEEEcC
Q 023556 183 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 183 ~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~ 213 (280)
+.+|+|+-... .....++.|++||+++..-+
T Consensus 144 ~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 144 APYDRIYVTAAGPDIPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CCcCEEEECCCcccchHHHHHhhCCCcEEEEEEc
Confidence 57999976543 35678889999999887543
No 170
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=47.00 E-value=86 Score=26.27 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=23.2
Q ss_pred CCccEEEeCCC---CHHHHHhccccCCEEEEEcC
Q 023556 183 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 183 ~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~ 213 (280)
..||+|+-... ..+..++.|++||+++..-.
T Consensus 145 ~~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 145 APYDRIYVTAAGPKIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred CCCCEEEEcCCcccccHHHHHhcCcCcEEEEEEc
Confidence 57998875433 35678899999999887644
No 171
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=46.94 E-value=91 Score=27.21 Aligned_cols=64 Identities=11% Similarity=0.175 Sum_probs=38.5
Q ss_pred EEecChhhHHHHHh-CCCCEEEeCCCCCccccCCCccEEEeCCC--CHHHHHhccccCCEEEEEcCC
Q 023556 151 AATSSTRNLEFLKS-LGADLAIDYTKDNFEDLPEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 151 ~~~~s~~~~~~l~~-lga~~vid~~~~~~~~~~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~ 214 (280)
.++.+++-.+.+++ .+...++..+..++.-..+.+|+|+.... .+....++|++||.++.+...
T Consensus 117 giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 117 GLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAPCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred EECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCCCCHHHHHhhccCCCEEEEEeCC
Confidence 55667766676654 23222222221111111246999987543 578899999999999987543
No 172
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=46.46 E-value=41 Score=30.80 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=26.8
Q ss_pred CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCC
Q 023556 183 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 183 ~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~ 215 (280)
.|+|+||+|+| ..+.+-..+..|.+.|.+....
T Consensus 94 ~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~ 129 (338)
T PLN02358 94 AGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 129 (338)
T ss_pred cCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCC
Confidence 48999999999 4567778888888888887554
No 173
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=45.95 E-value=79 Score=28.72 Aligned_cols=60 Identities=23% Similarity=0.268 Sum_probs=36.9
Q ss_pred EEecChhhHHHHH----hCCCCEEEeCCCCCccc---cCCCccEEEeCCC---CHHHHHhccccCCEEEEE
Q 023556 151 AATSSTRNLEFLK----SLGADLAIDYTKDNFED---LPEKFDVVYDAIG---QCDRAVKAIKEGGTVVAL 211 (280)
Q Consensus 151 ~~~~s~~~~~~l~----~lga~~vid~~~~~~~~---~~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~ 211 (280)
++..+++..+.++ .+|.+.+.... .+..+ ..+.+|+|+.+.| .....++.|++||+++..
T Consensus 110 gVDis~~~l~~Ar~~l~~~g~~nV~~i~-gD~~~~~~~~~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 110 SVEYSRKICEIAKRNVRRLGIENVIFVC-GDGYYGVPEFAPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred EEECCHHHHHHHHHHHHHcCCCcEEEEe-CChhhcccccCCccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence 4556666555443 46765432221 12211 1257999999877 346788999999998874
No 174
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=45.86 E-value=49 Score=30.32 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=27.2
Q ss_pred CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCC
Q 023556 183 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 183 ~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~ 215 (280)
.|+|+||+|+| .-+.+-..++.|.+.|.+....
T Consensus 89 ~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~ 124 (337)
T PTZ00023 89 NGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPP 124 (337)
T ss_pred cCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCC
Confidence 48999999999 4567777888888999988754
No 175
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=45.70 E-value=80 Score=27.68 Aligned_cols=75 Identities=19% Similarity=0.217 Sum_probs=45.3
Q ss_pred cChhhHHHHHh----CCCCEEEeCCCCCccccC--CCccEEEeCCC----CHHHHHhccccCCEEEEEcCCCCCCceEEE
Q 023556 154 SSTRNLEFLKS----LGADLAIDYTKDNFEDLP--EKFDVVYDAIG----QCDRAVKAIKEGGTVVALTGAVTPPGFRFV 223 (280)
Q Consensus 154 ~s~~~~~~l~~----lga~~vid~~~~~~~~~~--~g~DvV~d~~g----~~~~~l~~l~~gG~vV~~g~~~~~~~~~~~ 223 (280)
..++..+.+++ +|....+.....|..+.. ..+|.||--.. .++.+.+.|++||.++.+....
T Consensus 127 ~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~v-------- 198 (256)
T COG2519 127 IREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTV-------- 198 (256)
T ss_pred ecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCH--------
Confidence 44454444433 454443444434433322 47888876555 4789999999999999876533
Q ss_pred EeecHHHHHHHHHHHHCC
Q 023556 224 VTSNGEVLKKLNPYLESG 241 (280)
Q Consensus 224 ~~~~~~~l~~l~~ll~~G 241 (280)
+.++++.+.+++.
T Consensus 199 -----eQv~kt~~~l~~~ 211 (256)
T COG2519 199 -----EQVEKTVEALRER 211 (256)
T ss_pred -----HHHHHHHHHHHhc
Confidence 5666666655543
No 176
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=44.87 E-value=71 Score=27.15 Aligned_cols=52 Identities=23% Similarity=0.324 Sum_probs=40.3
Q ss_pred CEEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCC
Q 023556 206 GTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKA 270 (280)
Q Consensus 206 G~vV~~g~~~~~~~~~~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~ 270 (280)
|.++.+|..+ ..+-++++++++|.++|....-.+.+|-+..++=+.|.+...
T Consensus 129 ~~ivvIGNAP-------------TAL~~l~elie~~~~~palvIg~PVGFv~AaesKe~L~~~~i 180 (210)
T COG2082 129 GAIVVIGNAP-------------TALFELLELIEEGGIKPALVIGVPVGFVGAAESKEALRESPI 180 (210)
T ss_pred ceEEEEeCCH-------------HHHHHHHHHHHccCCCCcEEEEcCCcccchHHHHHHHHhCCC
Confidence 4788887754 899999999999988875433247888888888888887654
No 177
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=44.78 E-value=72 Score=29.22 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=26.6
Q ss_pred CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCC
Q 023556 183 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 183 ~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~ 215 (280)
.|+|+||+|+| .-+.+-..+..|.+.|.+....
T Consensus 90 ~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~ 125 (336)
T PRK13535 90 LGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPG 125 (336)
T ss_pred cCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCc
Confidence 48999999999 3466777888888888887664
No 178
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=44.71 E-value=29 Score=31.67 Aligned_cols=32 Identities=16% Similarity=0.345 Sum_probs=26.1
Q ss_pred CccEEEeCCC---CHHHHHhccccCCEEEEEcCCC
Q 023556 184 KFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 184 g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~ 215 (280)
|+|+||+|+| .-+.+...++.|.+.|.+....
T Consensus 90 gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~ 124 (327)
T TIGR01534 90 GVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPS 124 (327)
T ss_pred CCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCC
Confidence 8999999999 4567777888888888887553
No 179
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=44.44 E-value=46 Score=30.29 Aligned_cols=65 Identities=25% Similarity=0.314 Sum_probs=45.5
Q ss_pred EEecChhhHHHHHh-CCCC-EEEeCCCCCccccCCCccEEEeCC---C------CHHHHHhccccCCEEEEEcCCC
Q 023556 151 AATSSTRNLEFLKS-LGAD-LAIDYTKDNFEDLPEKFDVVYDAI---G------QCDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 151 ~~~~s~~~~~~l~~-lga~-~vid~~~~~~~~~~~g~DvV~d~~---g------~~~~~l~~l~~gG~vV~~g~~~ 215 (280)
+.+.+.+|+..+.. ++-. ++.-.+..++++...+.|+++.++ | ..++.++.|+||+.+|++.-..
T Consensus 196 ild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDq 271 (371)
T COG0686 196 ILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQ 271 (371)
T ss_pred EEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcC
Confidence 66677777777765 3443 333233345666778999999974 3 2578899999999999996544
No 180
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=44.01 E-value=51 Score=30.20 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.3
Q ss_pred CccEEEeCCC---CHHHHHhccccCCEEEEEcCCC
Q 023556 184 KFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 184 g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~ 215 (280)
|+|+||+|+| ..+.+...++.|.+.|.+....
T Consensus 90 gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~ 124 (337)
T PRK07403 90 GIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPG 124 (337)
T ss_pred CCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCC
Confidence 8999999999 3566777888888888887653
No 181
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=42.61 E-value=96 Score=29.82 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=53.9
Q ss_pred CCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceEEEecChhhHHHH----HhCCCCEE--EeCCCCCcccc
Q 023556 108 QVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAATSSTRNLEFL----KSLGADLA--IDYTKDNFEDL 181 (280)
Q Consensus 108 ~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~~~~~s~~~~~~l----~~lga~~v--id~~~~~~~~~ 181 (280)
.|.+|+.++.+-|+.=..+ .++..- +.. -|.=++.+.+..|.+.+ +++|...+ ++.+...+...
T Consensus 110 ~~~pg~~VLD~CAAPGgKT-t~la~~-l~~--------~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~ 179 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKT-TQIAAL-MNN--------QGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA 179 (470)
T ss_pred CCCCCCEEEEeCCCccHHH-HHHHHH-cCC--------CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh
Confidence 5678887777766543332 333321 100 12212566667776655 34787653 33332222222
Q ss_pred -CCCccEEE-e--CCC-C---------------------------HHHHHhccccCCEEEEEcCC
Q 023556 182 -PEKFDVVY-D--AIG-Q---------------------------CDRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 182 -~~g~DvV~-d--~~g-~---------------------------~~~~l~~l~~gG~vV~~g~~ 214 (280)
.+.||.|+ | |+| + +..++++|++||++|.....
T Consensus 180 ~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 180 LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 24688876 4 665 1 36778899999999876554
No 182
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=41.26 E-value=85 Score=27.42 Aligned_cols=64 Identities=27% Similarity=0.311 Sum_probs=37.4
Q ss_pred EEecChhhHHHHHh----CCCCEE--EeCCCCCccccCCCccEEEe---CCCC---------------------------
Q 023556 151 AATSSTRNLEFLKS----LGADLA--IDYTKDNFEDLPEKFDVVYD---AIGQ--------------------------- 194 (280)
Q Consensus 151 ~~~~s~~~~~~l~~----lga~~v--id~~~~~~~~~~~g~DvV~d---~~g~--------------------------- 194 (280)
+++.++.+.+.+++ +|.+.+ +..+...+....+.+|+|+- |.|.
T Consensus 101 a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~ 180 (264)
T TIGR00446 101 ANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKE 180 (264)
T ss_pred EEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHH
Confidence 66677777766643 665432 22222222222346998864 3331
Q ss_pred -HHHHHhccccCCEEEEEcCC
Q 023556 195 -CDRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 195 -~~~~l~~l~~gG~vV~~g~~ 214 (280)
+..++++|++||++|.....
T Consensus 181 iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 181 LIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred HHHHHHHhcCCCCEEEEEeCC
Confidence 35677889999999866443
No 183
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=41.25 E-value=48 Score=29.54 Aligned_cols=38 Identities=11% Similarity=0.195 Sum_probs=29.3
Q ss_pred cCCCccEEEeCCC-CH--HHHHhccccCCEEEEEcCCCCCC
Q 023556 181 LPEKFDVVYDAIG-QC--DRAVKAIKEGGTVVALTGAVTPP 218 (280)
Q Consensus 181 ~~~g~DvV~d~~g-~~--~~~l~~l~~gG~vV~~g~~~~~~ 218 (280)
..+++|+||+|++ .+ ...++.++++.-+|+++..+...
T Consensus 206 ~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~t 246 (287)
T TIGR02853 206 KVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGT 246 (287)
T ss_pred HhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCC
Confidence 3478999999987 22 46778899999999998876443
No 184
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=41.23 E-value=50 Score=28.27 Aligned_cols=85 Identities=20% Similarity=0.189 Sum_probs=52.2
Q ss_pred EEecChHHHHHHcCCCCCCCCCCCcccCceEEEecChhhHHHHHh----CCCCEEEeCCC-CCccc-----cCCCccEEE
Q 023556 120 AAALNPVDGKRRQGKFKATDSPLPTVPGYDVAATSSTRNLEFLKS----LGADLAIDYTK-DNFED-----LPEKFDVVY 189 (280)
Q Consensus 120 aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~~~~~s~~~~~~l~~----lga~~vid~~~-~~~~~-----~~~g~DvV~ 189 (280)
.+++.++-+++..+... -|.=..+..++++.+.+++ .|.+..|.--- .+..+ .-+.||+||
T Consensus 67 GT~~GySal~mA~~l~~---------~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 67 GTAIGYSALWMALALPD---------DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred ecccCHHHHHHHhhCCC---------CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 45777888887776432 1211145566777666655 67766332222 23222 126799997
Q ss_pred eCCC------CHHHHHhccccCCEEEEEcC
Q 023556 190 DAIG------QCDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 190 d~~g------~~~~~l~~l~~gG~vV~~g~ 213 (280)
--.. -++.+++.|++||-+|.=..
T Consensus 138 IDadK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 138 IDADKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred EeCChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 6544 27999999999999887543
No 185
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=39.05 E-value=81 Score=27.90 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=25.0
Q ss_pred CCccEEEeCCC---------CHHHHHhccccCCEEEEEcCCC
Q 023556 183 EKFDVVYDAIG---------QCDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 183 ~g~DvV~d~~g---------~~~~~l~~l~~gG~vV~~g~~~ 215 (280)
..+|.+--+.| .+.++.++|+|||++..+...-
T Consensus 176 ~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred CcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 45676665555 3789999999999999876654
No 186
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=39.01 E-value=44 Score=32.12 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=29.0
Q ss_pred CCCccEEEeCCC---CH-HHHHhccccCCEEEEEcCCC
Q 023556 182 PEKFDVVYDAIG---QC-DRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 182 ~~g~DvV~d~~g---~~-~~~l~~l~~gG~vV~~g~~~ 215 (280)
.+..|+|+.|+| .+ ...++.+++|+.++.+|...
T Consensus 307 l~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 307 VETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred HhcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCCc
Confidence 468999999998 24 48999999999999998765
No 187
>PRK10206 putative oxidoreductase; Provisional
Probab=38.82 E-value=1.6e+02 Score=26.85 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=35.1
Q ss_pred cCceEEEec--ChhhHHHHHhCCCCEEEeCCCCCccccC--CCccEEEeCCC---CHHHHHhccccCCEEEEE
Q 023556 146 PGYDVAATS--STRNLEFLKSLGADLAIDYTKDNFEDLP--EKFDVVYDAIG---QCDRAVKAIKEGGTVVAL 211 (280)
Q Consensus 146 ~G~e~~~~~--s~~~~~~l~~lga~~vid~~~~~~~~~~--~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~ 211 (280)
.+.+.+.+. ++++.+..++++...++ .++.+.+ .++|+|+.|+. ..+.+.++|+.| +=|.+
T Consensus 26 ~~~~l~av~d~~~~~~~~~~~~~~~~~~----~~~~ell~~~~iD~V~I~tp~~~H~~~~~~al~aG-khVl~ 93 (344)
T PRK10206 26 DSWHVAHIFRRHAKPEEQAPIYSHIHFT----SDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAG-KNVLV 93 (344)
T ss_pred CCEEEEEEEcCChhHHHHHHhcCCCccc----CCHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHcC-CcEEE
Confidence 356664333 33444455556532222 2344433 57999999987 467888888776 43433
No 188
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=38.40 E-value=1.3e+02 Score=28.43 Aligned_cols=63 Identities=27% Similarity=0.346 Sum_probs=37.8
Q ss_pred EEecChhhHHHHH----hCCCCE--EEeCCCCCccc----cCCCccEEE-e--CCC--C---------------------
Q 023556 151 AATSSTRNLEFLK----SLGADL--AIDYTKDNFED----LPEKFDVVY-D--AIG--Q--------------------- 194 (280)
Q Consensus 151 ~~~~s~~~~~~l~----~lga~~--vid~~~~~~~~----~~~g~DvV~-d--~~g--~--------------------- 194 (280)
+.+.++.+.+.++ .+|.+. ++..+...+.. ..+.||.|+ | |.| .
T Consensus 282 a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~ 361 (434)
T PRK14901 282 AVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAP 361 (434)
T ss_pred EEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHH
Confidence 5667777776664 367654 33322222221 124689886 4 444 1
Q ss_pred -----HHHHHhccccCCEEEEEcC
Q 023556 195 -----CDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 195 -----~~~~l~~l~~gG~vV~~g~ 213 (280)
+..++++|++||++|....
T Consensus 362 ~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 362 LQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4677889999999987544
No 189
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=37.61 E-value=94 Score=26.78 Aligned_cols=114 Identities=14% Similarity=0.199 Sum_probs=61.9
Q ss_pred cEEEEEEEEecChHH-HHHHcCCCCCCCCCCCcccCceE--EEecChhhHHHHHhCCCCEEEeCCCCCccccC----CCc
Q 023556 113 QVLIKVVAAALNPVD-GKRRQGKFKATDSPLPTVPGYDV--AATSSTRNLEFLKSLGADLAIDYTKDNFEDLP----EKF 185 (280)
Q Consensus 113 eVlVkV~aagl~~~D-~~~~~g~~~~~~~~~P~i~G~e~--~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~----~g~ 185 (280)
.|.|.+.- ++++.. -..+.|. ..+|...|-+. ++.+..+..+.+++.|++. +... ++.+.+ ..|
T Consensus 40 svel~i~L-~id~kk~~~~irg~-----v~LP~~~gk~~kV~Vfa~~~~~~eAk~aGad~-vg~e--dLi~~ik~~~~~f 110 (229)
T CHL00129 40 TAEAHISL-NIDPKYADQQLRTT-----VTLPKGTGKTIRIAVLTNEEKITEAKNAGADI-VGSD--DLIEEITKGNLDF 110 (229)
T ss_pred cEEEEEEE-CCCCCCCCCceeeE-----EECCCCCCCCcEEEEECChHhHHHHHHcCCCE-eCHH--HHHHHHHcCcccC
Confidence 36666655 776541 1123332 35777777776 6666777888899999984 3322 222221 368
Q ss_pred cEEEeCCCC---HHHHHhccccCCEEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCceee
Q 023556 186 DVVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPI 246 (280)
Q Consensus 186 DvV~d~~g~---~~~~l~~l~~gG~vV~~g~~~~~~~~~~~~~~~~~~l~~l~~ll~~G~l~~~ 246 (280)
|+++-.... +...-+.|.|.|.+- .+.. ....+++..+++-+..|.+...
T Consensus 111 d~~iAt~d~m~~l~kLgriLGprGlMP------~pk~-----gTvt~di~~~V~~~k~G~v~~r 163 (229)
T CHL00129 111 DLLIATPDMMPKLAKLGRVLGPRGLMP------SPKS-----GTVTTDLASAINEFKKGKLEYR 163 (229)
T ss_pred CEEEECHHHHHHHHHhcCcccccCCCC------CCCC-----CCccccHHHHHHHHhcCcEEEE
Confidence 888866542 333334455544431 1110 0012456777777777765443
No 190
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=37.22 E-value=1.1e+02 Score=24.28 Aligned_cols=64 Identities=23% Similarity=0.401 Sum_probs=35.9
Q ss_pred CceE-EEecChhhHHHHHhCCCCEEEeCCCCCccccCCCccEEEeCCCC---HHH------HHhccccCCEEEEEcCCC
Q 023556 147 GYDV-AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIGQ---CDR------AVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 147 G~e~-~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~~g~DvV~d~~g~---~~~------~l~~l~~gG~vV~~g~~~ 215 (280)
||++ +-..++++.+.+.+.|+..+ .+..+..+..|+||-|+.. .+. .+..+++|..+|.++...
T Consensus 24 g~~v~~~d~~~~~~~~~~~~g~~~~-----~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~ 97 (163)
T PF03446_consen 24 GYEVTVYDRSPEKAEALAEAGAEVA-----DSPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTIS 97 (163)
T ss_dssp TTEEEEEESSHHHHHHHHHTTEEEE-----SSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--
T ss_pred CCeEEeeccchhhhhhhHHhhhhhh-----hhhhhHhhcccceEeecccchhhhhhhhhhHHhhccccceEEEecCCcc
Confidence 5555 55567788888887774332 1233334567999998762 222 455566667777765543
No 191
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=36.63 E-value=53 Score=30.55 Aligned_cols=62 Identities=19% Similarity=0.343 Sum_probs=38.0
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCccccCCCccEEEeC-----CC------CHHHHHhccccCCEEEEEc
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDA-----IG------QCDRAVKAIKEGGTVVALT 212 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~~g~DvV~d~-----~g------~~~~~l~~l~~gG~vV~~g 212 (280)
+++.+++..+++++......+.....++.+..+.+|.|+.. +| .++.+.++|+|||+++...
T Consensus 195 giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 195 GVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 56778888888876322211222222332223578988753 33 2577888999999998754
No 192
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=35.98 E-value=45 Score=28.22 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=24.5
Q ss_pred CCccEEEeCCC--C---------HHHHHhccccCCEEEEEcCC
Q 023556 183 EKFDVVYDAIG--Q---------CDRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 183 ~g~DvV~d~~g--~---------~~~~l~~l~~gG~vV~~g~~ 214 (280)
+.+|.|+|+.. . ++...++|++||+++.++..
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 46899999754 1 57888999999987766543
No 193
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=35.53 E-value=1.4e+02 Score=25.09 Aligned_cols=63 Identities=21% Similarity=0.185 Sum_probs=36.1
Q ss_pred EEecChhhHHHHHh----CCCC--EEEeCCCCCccccCCCccEEEeCCC---------CHHHHHhccccCCEEEEEcC
Q 023556 151 AATSSTRNLEFLKS----LGAD--LAIDYTKDNFEDLPEKFDVVYDAIG---------QCDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 151 ~~~~s~~~~~~l~~----lga~--~vid~~~~~~~~~~~g~DvV~d~~g---------~~~~~l~~l~~gG~vV~~g~ 213 (280)
.++.++...+.+++ .+.+ .++..+..++.-..+.+|+|+-+.+ .+..+.+.|++||+++.+..
T Consensus 75 gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 75 GLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred EEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 55566666555543 3332 2232222222111257999986433 15778899999999987644
No 194
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=35.43 E-value=1.5e+02 Score=25.74 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=24.7
Q ss_pred CCccEEEeCCC---------CHHHHHhccccCCEEEEEcCC
Q 023556 183 EKFDVVYDAIG---------QCDRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 183 ~g~DvV~d~~g---------~~~~~l~~l~~gG~vV~~g~~ 214 (280)
+.+|+|+-..+ .+.++.++|+|||+++.+...
T Consensus 144 ~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 144 CYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred CCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 46999986544 268899999999999887544
No 195
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=34.98 E-value=82 Score=29.96 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=26.4
Q ss_pred CCccEEEeCCC---CHHHHHhccccCCEEEEEcCC
Q 023556 183 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 183 ~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~ 214 (280)
.|+|+||+|+| ..+.+-..+..|.+.|.+...
T Consensus 164 ~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP 198 (442)
T PLN02237 164 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 198 (442)
T ss_pred cCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCC
Confidence 48999999999 456777888889899998844
No 196
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=34.84 E-value=83 Score=26.86 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=38.2
Q ss_pred cCCEEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhC
Q 023556 204 EGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETN 268 (280)
Q Consensus 204 ~gG~vV~~g~~~~~~~~~~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~ 268 (280)
.+|.++.+|..+ ..|-++++++++|.++|....-.+.+|=++.|+=+.|.+.
T Consensus 131 ~~~~IvvIGNAP-------------TAL~~l~~li~~g~~~PalVIG~PVGFV~AaEsKe~L~~~ 182 (214)
T PRK08286 131 EGPKLFVFGNAP-------------TALFRLLEMVEHGQLQVDAVVGVPVGFVGAAESKEALTES 182 (214)
T ss_pred cCCcEEEEeCcH-------------HHHHHHHHHHHcCCCCCcEEEEeCCccccHHHHHHHHHhC
Confidence 566688887754 8999999999999988754332367777777777777654
No 197
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=33.96 E-value=1.3e+02 Score=24.41 Aligned_cols=78 Identities=23% Similarity=0.209 Sum_probs=43.4
Q ss_pred EEecChhhHHHHHh----CCCC--EEEeCCCCCccccCCCccEEEeCCC------CHHHHHhccccCCEEEEEcCCCCCC
Q 023556 151 AATSSTRNLEFLKS----LGAD--LAIDYTKDNFEDLPEKFDVVYDAIG------QCDRAVKAIKEGGTVVALTGAVTPP 218 (280)
Q Consensus 151 ~~~~s~~~~~~l~~----lga~--~vid~~~~~~~~~~~g~DvV~d~~g------~~~~~l~~l~~gG~vV~~g~~~~~~ 218 (280)
+++.+++..+.+++ ++.. .++..+.. ....+.+|+|+.... .++.+.++|++||+++....
T Consensus 60 ~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~--~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~----- 132 (187)
T PRK08287 60 AIERNPDALRLIKENRQRFGCGNIDIIPGEAP--IELPGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI----- 132 (187)
T ss_pred EEECCHHHHHHHHHHHHHhCCCCeEEEecCch--hhcCcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe-----
Confidence 55666666555543 4432 22221111 111257999986532 25778899999999876321
Q ss_pred ceEEEEeecHHHHHHHHHHHHCCCc
Q 023556 219 GFRFVVTSNGEVLKKLNPYLESGKV 243 (280)
Q Consensus 219 ~~~~~~~~~~~~l~~l~~ll~~G~l 243 (280)
......++.+++++..+
T Consensus 133 --------~~~~~~~~~~~l~~~g~ 149 (187)
T PRK08287 133 --------LLENLHSALAHLEKCGV 149 (187)
T ss_pred --------cHhhHHHHHHHHHHCCC
Confidence 12345566666665444
No 198
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=33.90 E-value=79 Score=27.10 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=36.2
Q ss_pred EEecChhhHHHHHh----CCCCEEEeCCCCCcccc---------CCCccEEEeCCC------CHHHHHhccccCCEEEEE
Q 023556 151 AATSSTRNLEFLKS----LGADLAIDYTKDNFEDL---------PEKFDVVYDAIG------QCDRAVKAIKEGGTVVAL 211 (280)
Q Consensus 151 ~~~~s~~~~~~l~~----lga~~vid~~~~~~~~~---------~~g~DvV~d~~g------~~~~~l~~l~~gG~vV~~ 211 (280)
.+..+++..+.+++ .|.+.-|.....+..+. .+.||+||-... .++.++++|++||.++.-
T Consensus 98 tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 98 AIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 55566666665544 56443233222222211 257999986542 368889999999988753
No 199
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=33.62 E-value=2.4e+02 Score=26.76 Aligned_cols=95 Identities=24% Similarity=0.318 Sum_probs=55.6
Q ss_pred CCCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceE---EEecChhhHHHHH----hCCCCE--EEeCCCCCc
Q 023556 108 QVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV---AATSSTRNLEFLK----SLGADL--AIDYTKDNF 178 (280)
Q Consensus 108 ~~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~---~~~~s~~~~~~l~----~lga~~--vid~~~~~~ 178 (280)
.|++||-.+.+.|+.-+.+. ++.. .+...+ +.+.+..+...++ ++|.+. +.+++...+
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt-~IAa------------lMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef 304 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTT-HIAA------------LMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREF 304 (460)
T ss_pred CCCCCCeecchhcCCCchHH-HHHH------------HHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccc
Confidence 57888888888877765552 2211 112222 4445555555443 378765 445665544
Q ss_pred cc-c-CCCccEE-Ee--CCCC----------------------------HHHHHhccccCCEEEEEcCCC
Q 023556 179 ED-L-PEKFDVV-YD--AIGQ----------------------------CDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 179 ~~-~-~~g~DvV-~d--~~g~----------------------------~~~~l~~l~~gG~vV~~g~~~ 215 (280)
.. . ++.||-| +| |.|+ +..|++++++||-+|......
T Consensus 305 ~~~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 305 PEKEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred cccccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 32 2 2468866 45 5551 467888999999888765443
No 200
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=33.45 E-value=55 Score=29.83 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=25.5
Q ss_pred CccEEEeCCC---CHHHHHhccccC-CEEEEEcCCCCC
Q 023556 184 KFDVVYDAIG---QCDRAVKAIKEG-GTVVALTGAVTP 217 (280)
Q Consensus 184 g~DvV~d~~g---~~~~~l~~l~~g-G~vV~~g~~~~~ 217 (280)
|+|+|+||+| ..+.+-+.+..| -+-|.+++....
T Consensus 89 gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~ 126 (335)
T COG0057 89 GVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKD 126 (335)
T ss_pred CccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCC
Confidence 6999999999 456777778775 677777766643
No 201
>PRK05424 rplA 50S ribosomal protein L1; Validated
Probab=32.64 E-value=1.3e+02 Score=25.90 Aligned_cols=112 Identities=21% Similarity=0.233 Sum_probs=59.0
Q ss_pred EEEEEEEEecChHH-HHHHcCCCCCCCCCCCcccCceE--EEecChhhHHHHHhCCCCEEEeCCCCCccccC----CCcc
Q 023556 114 VLIKVVAAALNPVD-GKRRQGKFKATDSPLPTVPGYDV--AATSSTRNLEFLKSLGADLAIDYTKDNFEDLP----EKFD 186 (280)
Q Consensus 114 VlVkV~aagl~~~D-~~~~~g~~~~~~~~~P~i~G~e~--~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~----~g~D 186 (280)
|.|.+.- ++++.- -..+.| ...+|..+|-+. ++.+..+..+.+++.|++.+ .. +++.+.+ -.+|
T Consensus 41 vel~v~L-~id~kK~~~~irg-----~v~LP~~~gk~~kI~Vfa~~~~~~~Ak~aGa~~v-g~--eeLi~~ik~~~~~fd 111 (230)
T PRK05424 41 VDVAVNL-GVDPRKADQQVRG-----AVVLPHGTGKTVRVAVFAKGEKAEEAKAAGADIV-GG--EDLIEKIKGGWLDFD 111 (230)
T ss_pred EEEEEEe-CCCCCCCCCeeeE-----EEECCCCCCCCcEEEEECChHhHHHHHHcCCCEe-CH--HHHHHHHhcCCCcCC
Confidence 5566655 665431 111223 235777777776 55566677889999999843 22 1222211 2588
Q ss_pred EEEeCCCC---HHHHHhccccCCEEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcee
Q 023556 187 VVYDAIGQ---CDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKP 245 (280)
Q Consensus 187 vV~d~~g~---~~~~l~~l~~gG~vV~~g~~~~~~~~~~~~~~~~~~l~~l~~ll~~G~l~~ 245 (280)
+++-.... +...-+.|.|.|.+- .+.. ....+++.++.+-+.+|.++.
T Consensus 112 ~~iat~~~m~~l~~Lg~iLGPrGlMP------~pk~-----gTv~~di~~~I~~~k~g~v~~ 162 (230)
T PRK05424 112 VVIATPDMMGKVGKLGRILGPRGLMP------NPKT-----GTVTMDVAKAVKEAKAGKVEF 162 (230)
T ss_pred EEEECHHHHHHHHHhccccccccCCC------CCCC-----CCcchhHHHHHHHHhcCcEEE
Confidence 88765442 233344445544431 1100 012256777777777776543
No 202
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=32.39 E-value=73 Score=29.21 Aligned_cols=63 Identities=19% Similarity=0.128 Sum_probs=36.2
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCcccc---CCCccEEEeCCC---------CHHHHHhccccCCEEEEEcC
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDL---PEKFDVVYDAIG---------QCDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~---~~g~DvV~d~~g---------~~~~~l~~l~~gG~vV~~g~ 213 (280)
+++.+++-.+.+++.....-+.....+..+. .+.+|+|+.+.. .++++.+.|++||+++.++.
T Consensus 142 gVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 142 ILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred EEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 5666776666665532110011111222221 246999887532 26789999999999987753
No 203
>PRK08285 cobH precorrin-8X methylmutase; Reviewed
Probab=32.16 E-value=1e+02 Score=26.15 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHh
Q 023556 228 GEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIET 267 (280)
Q Consensus 228 ~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~ 267 (280)
...|-++++++++|.++|....-.+.+|-++.|+=+.|.+
T Consensus 137 PTAL~~l~~li~~g~~~PalVIG~PVGFV~a~ESKe~L~~ 176 (208)
T PRK08285 137 PTALFRLLEMLDAGAPRPAAILGFPVGFVGAAESKDALAA 176 (208)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCCccccHHHHHHHHHh
Confidence 3899999999999998875432236778777777777765
No 204
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=31.77 E-value=73 Score=27.73 Aligned_cols=61 Identities=30% Similarity=0.378 Sum_probs=42.1
Q ss_pred EEecChhhHHHHHh----CCCCEEEeCCCCCccc---cCCCccEEEeC-----CC----CHHHHHhccccCCEEEEEcC
Q 023556 151 AATSSTRNLEFLKS----LGADLAIDYTKDNFED---LPEKFDVVYDA-----IG----QCDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 151 ~~~~s~~~~~~l~~----lga~~vid~~~~~~~~---~~~g~DvV~d~-----~g----~~~~~l~~l~~gG~vV~~g~ 213 (280)
+.+.+++..+.++. -|.. +||.....++ ..+.||+|+.- +. -+..+.++++|||.++.-.-
T Consensus 86 giD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 86 GIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred EecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence 67777887777764 3443 7787755444 34689999763 22 26789999999999886533
No 205
>PRK08317 hypothetical protein; Provisional
Probab=31.69 E-value=1.5e+02 Score=24.54 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=36.6
Q ss_pred EEecChhhHHHHHhC----CCC-EEEeCCCCCccccCCCccEEEeCCC---------CHHHHHhccccCCEEEEEcC
Q 023556 151 AATSSTRNLEFLKSL----GAD-LAIDYTKDNFEDLPEKFDVVYDAIG---------QCDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 151 ~~~~s~~~~~~l~~l----ga~-~vid~~~~~~~~~~~g~DvV~d~~g---------~~~~~l~~l~~gG~vV~~g~ 213 (280)
+++.++...+.+++. +.. .++..+...+....+.+|+|+-... .+..+.++|++||.++....
T Consensus 49 ~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 49 GIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred EEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 566677767776553 211 1221111111112257898876432 26888999999999987754
No 206
>PRK04266 fibrillarin; Provisional
Probab=31.45 E-value=1.6e+02 Score=25.19 Aligned_cols=61 Identities=28% Similarity=0.370 Sum_probs=36.1
Q ss_pred CCccEEEeCCCC-------HHHHHhccccCCEEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCceeec
Q 023556 183 EKFDVVYDAIGQ-------CDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPII 247 (280)
Q Consensus 183 ~g~DvV~d~~g~-------~~~~l~~l~~gG~vV~~g~~~~~~~~~~~~~~~~~~l~~l~~ll~~G~l~~~~ 247 (280)
..+|+|+..... ++.+.++|++||+++..-.. .+ ++.... ..+.+++..+++++..++...
T Consensus 140 ~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~-~~--~d~~~~-~~~~~~~~~~~l~~aGF~~i~ 207 (226)
T PRK04266 140 EKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKA-RS--IDVTKD-PKEIFKEEIRKLEEGGFEILE 207 (226)
T ss_pred ccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEec-cc--ccCcCC-HHHHHHHHHHHHHHcCCeEEE
Confidence 569999954431 57888899999999984111 11 111111 124456666778776666543
No 207
>PRK11579 putative oxidoreductase; Provisional
Probab=31.33 E-value=3.9e+02 Score=24.06 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=33.9
Q ss_pred cCceEEEecChhhHHHHHhCCCCEEEeCCCCCccccC--CCccEEEeCCC---CHHHHHhccccCCEEEEE
Q 023556 146 PGYDVAATSSTRNLEFLKSLGADLAIDYTKDNFEDLP--EKFDVVYDAIG---QCDRAVKAIKEGGTVVAL 211 (280)
Q Consensus 146 ~G~e~~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~--~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~ 211 (280)
++.+.+.+++.........++...++ .++.+.+ .++|+|+.|+. ..+.+..+|+.|=. |.+
T Consensus 28 ~~~~l~av~d~~~~~~~~~~~~~~~~----~~~~ell~~~~vD~V~I~tp~~~H~~~~~~al~aGkh-Vl~ 93 (346)
T PRK11579 28 PGLELAAVSSSDATKVKADWPTVTVV----SEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKH-VVV 93 (346)
T ss_pred CCCEEEEEECCCHHHHHhhCCCCcee----CCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCe-EEE
Confidence 45666544443322222344332222 2344443 57999999987 46788888877544 444
No 208
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=31.31 E-value=38 Score=28.84 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=22.5
Q ss_pred CCccEEEeCCC--C---------HHHHHhccccCCEEEEE
Q 023556 183 EKFDVVYDAIG--Q---------CDRAVKAIKEGGTVVAL 211 (280)
Q Consensus 183 ~g~DvV~d~~g--~---------~~~~l~~l~~gG~vV~~ 211 (280)
+.||+|+|++. . .+...++|++||+++.+
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 47999999876 2 47888899999994433
No 209
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.17 E-value=84 Score=28.09 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=39.9
Q ss_pred HHHHhCCCCEEE-eCCCCCccccCCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCC
Q 023556 160 EFLKSLGADLAI-DYTKDNFEDLPEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 160 ~~l~~lga~~vi-d~~~~~~~~~~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~ 215 (280)
.+|...|++..+ +.+..++.+..+..|+|+.++| .+-. -+.+++|-.+|.+|...
T Consensus 177 ~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~avG~p~~v~-~~~vk~gavVIDvGin~ 234 (285)
T PRK10792 177 LELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGFIP-GEWIKPGAIVIDVGINR 234 (285)
T ss_pred HHHHHCCCeEEEEECCCCCHHHHHhhCCEEEEcCCCccccc-HHHcCCCcEEEEccccc
Confidence 455667776554 5555667777789999999999 3322 27889999999998654
No 210
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.00 E-value=81 Score=28.19 Aligned_cols=54 Identities=17% Similarity=0.370 Sum_probs=39.0
Q ss_pred HHHHhCCCCEE-EeCCCCCccccCCCccEEEeCCC--C-HHHHHhccccCCEEEEEcCCC
Q 023556 160 EFLKSLGADLA-IDYTKDNFEDLPEKFDVVYDAIG--Q-CDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 160 ~~l~~lga~~v-id~~~~~~~~~~~g~DvV~d~~g--~-~~~~l~~l~~gG~vV~~g~~~ 215 (280)
.+|...|++.+ ++.+..++.+..+..|+||.++| . +.. +.+++|-.+|.+|...
T Consensus 176 ~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg~p~~i~~--~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 176 KLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGKPGLVTK--DVVKEGAVIIDVGNTP 233 (286)
T ss_pred HHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECCCCCcccCH--HHcCCCcEEEEcCCCc
Confidence 45566787764 45555566666789999999999 2 333 4689999999998765
No 211
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=30.67 E-value=2.3e+02 Score=26.36 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=53.8
Q ss_pred CCCCcEEEEEEEEecChHHHHHHcCCCCCCCCCCCcccCceEEEe--cChhhHHHH-HhCC--CCEEEeCCCCC------
Q 023556 109 VKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAAT--SSTRNLEFL-KSLG--ADLAIDYTKDN------ 177 (280)
Q Consensus 109 ~~~~eVlVkV~aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~~~~--~s~~~~~~l-~~lg--a~~vid~~~~~------ 177 (280)
-...-|+|-+..+|--+++....- -.++|.+++++ .+.++...+ ...| -.++++..+..
T Consensus 13 a~G~PiRVGlIGAG~mG~~ivtQi----------~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai 82 (438)
T COG4091 13 AEGKPIRVGLIGAGEMGTGIVTQI----------ASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAI 82 (438)
T ss_pred ccCCceEEEEecccccchHHHHHH----------hhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHH
Confidence 344557777777777666654221 14678887333 333333332 2222 12233332211
Q ss_pred ------------ccccCCCccEEEeCCC----CHHHHHhccccCCEEEEEcC
Q 023556 178 ------------FEDLPEKFDVVYDAIG----QCDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 178 ------------~~~~~~g~DvV~d~~g----~~~~~l~~l~~gG~vV~~g~ 213 (280)
..-....+|+|+|++| +.+.+|..+..+-++|.+..
T Consensus 83 ~aGKi~vT~D~~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNV 134 (438)
T COG4091 83 EAGKIAVTDDAELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNV 134 (438)
T ss_pred hcCcEEEecchhhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEe
Confidence 1111257999999999 46788888888888887743
No 212
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.96 E-value=78 Score=28.18 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=37.8
Q ss_pred HHHhCCCCE-EEeCCCCCccccCCCccEEEeCCC-C-HHHHHhccccCCEEEEEcCCC
Q 023556 161 FLKSLGADL-AIDYTKDNFEDLPEKFDVVYDAIG-Q-CDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 161 ~l~~lga~~-vid~~~~~~~~~~~g~DvV~d~~g-~-~~~~l~~l~~gG~vV~~g~~~ 215 (280)
++...|++. +...+..++.+..+..|+|+.++| . + ---+++++|..+|++|...
T Consensus 171 lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~~l-v~~~~vk~GavVIDVgi~~ 227 (279)
T PRK14178 171 LLLNADATVTICHSKTENLKAELRQADILVSAAGKAGF-ITPDMVKPGATVIDVGINQ 227 (279)
T ss_pred HHHhCCCeeEEEecChhHHHHHHhhCCEEEECCCcccc-cCHHHcCCCcEEEEeeccc
Confidence 445678764 345555667777789999999999 2 2 1123379999999998764
No 213
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=29.91 E-value=1.2e+02 Score=24.82 Aligned_cols=60 Identities=23% Similarity=0.442 Sum_probs=34.9
Q ss_pred EEecChhhHHHHH----hCCCCE--EEeCCCCCccccCCCccEEEeCC-C----CHHHHHhccccCCEEEEE
Q 023556 151 AATSSTRNLEFLK----SLGADL--AIDYTKDNFEDLPEKFDVVYDAI-G----QCDRAVKAIKEGGTVVAL 211 (280)
Q Consensus 151 ~~~~s~~~~~~l~----~lga~~--vid~~~~~~~~~~~g~DvV~d~~-g----~~~~~l~~l~~gG~vV~~ 211 (280)
+++.+++..++++ +.|.+. ++..+-.++. ..+.+|+|+-.. . .++.+.++|++||+++..
T Consensus 71 ~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 71 LLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRALASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred EEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehhhhCHHHHHHHHHHhcCCCCEEEEE
Confidence 5566666555443 355432 3333322221 235799887643 2 246778889999999976
No 214
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=29.62 E-value=1.7e+02 Score=24.04 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=24.1
Q ss_pred CCccEEEeCCC---------CHHHHHhccccCCEEEEEcCC
Q 023556 183 EKFDVVYDAIG---------QCDRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 183 ~g~DvV~d~~g---------~~~~~l~~l~~gG~vV~~g~~ 214 (280)
+.+|+|+-..+ .++.+.+.|++||+++.+...
T Consensus 105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 56998876433 267888899999999987653
No 215
>CHL00194 ycf39 Ycf39; Provisional
Probab=29.59 E-value=1.2e+02 Score=26.91 Aligned_cols=68 Identities=22% Similarity=0.271 Sum_probs=39.0
Q ss_pred CceE-EEecChhhHHHHHhCCCCEEE-eCCCC-CccccCCCccEEEeCCCC---------------HHHHHhccccCC--
Q 023556 147 GYDV-AATSSTRNLEFLKSLGADLAI-DYTKD-NFEDLPEKFDVVYDAIGQ---------------CDRAVKAIKEGG-- 206 (280)
Q Consensus 147 G~e~-~~~~s~~~~~~l~~lga~~vi-d~~~~-~~~~~~~g~DvV~d~~g~---------------~~~~l~~l~~gG-- 206 (280)
||++ +.+++.++...+...|.+.+. |..+. .+.....++|+||++++. ....+++++..|
T Consensus 24 g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvk 103 (317)
T CHL00194 24 GYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIK 103 (317)
T ss_pred CCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCC
Confidence 6666 455555555555555654332 33332 234446789999998651 123455555444
Q ss_pred EEEEEcCC
Q 023556 207 TVVALTGA 214 (280)
Q Consensus 207 ~vV~~g~~ 214 (280)
++|.++..
T Consensus 104 r~I~~Ss~ 111 (317)
T CHL00194 104 RFIFFSIL 111 (317)
T ss_pred EEEEeccc
Confidence 88887764
No 216
>PLN02244 tocopherol O-methyltransferase
Probab=29.28 E-value=1.2e+02 Score=27.51 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=23.8
Q ss_pred CCccEEEeCCC---------CHHHHHhccccCCEEEEEcC
Q 023556 183 EKFDVVYDAIG---------QCDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 183 ~g~DvV~d~~g---------~~~~~l~~l~~gG~vV~~g~ 213 (280)
+.||+|+-.-. .+.++.++|++||+++....
T Consensus 185 ~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 185 GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred CCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 57999986432 25788899999999998643
No 217
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=29.21 E-value=2.1e+02 Score=26.93 Aligned_cols=20 Identities=40% Similarity=0.456 Sum_probs=15.4
Q ss_pred HHHHhccccCCEEEEEcCCC
Q 023556 196 DRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 196 ~~~l~~l~~gG~vV~~g~~~ 215 (280)
..++++|++||++|.....-
T Consensus 352 ~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 352 DAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred HHHHHhcCCCcEEEEEeCCC
Confidence 45788899999999765443
No 218
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=28.98 E-value=2.2e+02 Score=26.06 Aligned_cols=110 Identities=23% Similarity=0.248 Sum_probs=53.8
Q ss_pred CEEEeCCCCCccccC---CCccEEEeCCC--CHHHHHhccccCCEEEEEcCCC-----------------CCCceEEEEe
Q 023556 168 DLAIDYTKDNFEDLP---EKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAV-----------------TPPGFRFVVT 225 (280)
Q Consensus 168 ~~vid~~~~~~~~~~---~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~-----------------~~~~~~~~~~ 225 (280)
.++||..+.+....+ .+.|+++--+- ..+..++.=..|.++|-..... .-....+.+.
T Consensus 56 s~Vi~MlD~~al~avv~rekPd~IVpEiEAI~td~L~elE~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa 135 (394)
T COG0027 56 SYVIDMLDGDALRAVVEREKPDYIVPEIEAIATDALVELEEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFA 135 (394)
T ss_pred eeeeeccCHHHHHHHHHhhCCCeeeehhhhhhHHHHHHHHhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCcccccc
Confidence 456666654432221 46777765433 2344444445566655433222 0011122333
Q ss_pred ecHHHHHHHHHHHHCC-CceeecCC-----CcccchhhHHHHHHHHHhCCC--CeeEEEE
Q 023556 226 SNGEVLKKLNPYLESG-KVKPIIDP-----KGPFPFSQVVEAFSYIETNKA--TGKVVIH 277 (280)
Q Consensus 226 ~~~~~l~~l~~ll~~G-~l~~~~~~-----~~~~~l~~v~~A~~~l~~~~~--~gkvVv~ 277 (280)
.+-+.|.++.+-+.-- .+||.... ..+-+-+|+++|+++..++.. .+|++++
T Consensus 136 ~s~~e~~~a~~~iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE 195 (394)
T COG0027 136 DSLEELRAAVEKIGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVE 195 (394)
T ss_pred ccHHHHHHHHHHcCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEE
Confidence 3334455554443322 23333221 123568999999999988754 3666553
No 219
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=28.78 E-value=2.8e+02 Score=22.94 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=23.6
Q ss_pred CCccEEEeCCC---CHHHHHhccccCCEEEEEcC
Q 023556 183 EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 183 ~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~ 213 (280)
+.+|+|+-... .....++.|++||+++..-.
T Consensus 143 ~~fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 143 APFDRILVTAAAPEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCEEEEccCchhhhHHHHHhcCCCcEEEEEEc
Confidence 57999886544 34677889999999887655
No 220
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=28.71 E-value=2.5e+02 Score=26.59 Aligned_cols=64 Identities=27% Similarity=0.391 Sum_probs=38.5
Q ss_pred EEecChhhHHHHH----hCCCCE--EEeCCCCCccccCCCccEEEe---CCC--C-------------------------
Q 023556 151 AATSSTRNLEFLK----SLGADL--AIDYTKDNFEDLPEKFDVVYD---AIG--Q------------------------- 194 (280)
Q Consensus 151 ~~~~s~~~~~~l~----~lga~~--vid~~~~~~~~~~~g~DvV~d---~~g--~------------------------- 194 (280)
+++.++.+.+.++ ++|.+. ++..+...+. ....||+|+- |+| .
T Consensus 280 avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~ 358 (445)
T PRK14904 280 AVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAE 358 (445)
T ss_pred EEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHH
Confidence 6777777776664 367653 2222222221 1246998874 444 1
Q ss_pred -HHHHHhccccCCEEEEEcCCC
Q 023556 195 -CDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 195 -~~~~l~~l~~gG~vV~~g~~~ 215 (280)
+..+.++|++||++|......
T Consensus 359 iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 359 LLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred HHHHHHHhcCCCcEEEEEeCCC
Confidence 456777899999999865544
No 221
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=28.71 E-value=2.2e+02 Score=24.39 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=37.5
Q ss_pred EEecChhhHHHHHhC-CCCEEEeCCCCCccccCCCccEEEeCCC---------CHHHHHhccccCCEEEEEc
Q 023556 151 AATSSTRNLEFLKSL-GADLAIDYTKDNFEDLPEKFDVVYDAIG---------QCDRAVKAIKEGGTVVALT 212 (280)
Q Consensus 151 ~~~~s~~~~~~l~~l-ga~~vid~~~~~~~~~~~g~DvV~d~~g---------~~~~~l~~l~~gG~vV~~g 212 (280)
+++.++.-.+.+++. ....++..+-..+. ....+|+|+-... .+..+.++|++||+++...
T Consensus 60 gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 60 GIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 566777767777653 22223332222222 1247999986543 2678889999999998753
No 222
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=28.34 E-value=1.2e+02 Score=27.04 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=35.5
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCccccCCCccEEEeCCC--C----HHHHHhccccCCEEEEEcC
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG--Q----CDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~~g~DvV~d~~g--~----~~~~l~~l~~gG~vV~~g~ 213 (280)
+.+.++++.+.+++.|....+. .+..+..++.|+||.|+. . +......++++..++.+|.
T Consensus 36 ~~dr~~~~~~~a~~~g~~~~~~---~~~~~~~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~dvgs 101 (307)
T PRK07502 36 GADRSAETRARARELGLGDRVT---TSAAEAVKGADLVILCVPVGASGAVAAEIAPHLKPGAIVTDVGS 101 (307)
T ss_pred EEECCHHHHHHHHhCCCCceec---CCHHHHhcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEEeCcc
Confidence 4556677778887777532221 122333467899999987 2 2333345666766666654
No 223
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=28.25 E-value=1.8e+02 Score=22.52 Aligned_cols=62 Identities=23% Similarity=0.328 Sum_probs=41.0
Q ss_pred EEecChhhHHHHHh----CCCC--EEEeCCCCCccccC-CCccEEEeCCC---------CHHHHHhccccCCEEEEEc
Q 023556 151 AATSSTRNLEFLKS----LGAD--LAIDYTKDNFEDLP-EKFDVVYDAIG---------QCDRAVKAIKEGGTVVALT 212 (280)
Q Consensus 151 ~~~~s~~~~~~l~~----lga~--~vid~~~~~~~~~~-~g~DvV~d~~g---------~~~~~l~~l~~gG~vV~~g 212 (280)
.++.+++-.+++++ ++.+ .++..+-.++.... +.+|+|+.... .++.+.++|+++|.++...
T Consensus 33 gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~ 110 (152)
T PF13847_consen 33 GVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISD 110 (152)
T ss_dssp EEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEE
Confidence 67778877777755 5655 44433333332112 68999998743 2678899999999988653
No 224
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=27.71 E-value=1.2e+02 Score=22.21 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=25.2
Q ss_pred ccccCCCccEEEeCCC--CHH-HHHhccccCCEEEEEcCCCCC
Q 023556 178 FEDLPEKFDVVYDAIG--QCD-RAVKAIKEGGTVVALTGAVTP 217 (280)
Q Consensus 178 ~~~~~~g~DvV~d~~g--~~~-~~l~~l~~gG~vV~~g~~~~~ 217 (280)
+...+.++|+||-+++ .+. ...+..+.-|.++.....+..
T Consensus 54 ~~~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D~p~~ 96 (103)
T PF13241_consen 54 FEEDLDGADLVFAATDDPELNEAIYADARARGILVNVVDDPEL 96 (103)
T ss_dssp -GGGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT-CCC
T ss_pred HHHHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECCCcCC
Confidence 3334578999999998 344 444444668999888766533
No 225
>PLN02476 O-methyltransferase
Probab=27.51 E-value=94 Score=27.65 Aligned_cols=61 Identities=15% Similarity=0.275 Sum_probs=36.6
Q ss_pred EEecChhhHHHHH----hCCCCEEEeCCCCCccc----c-----CCCccEEEeCCC------CHHHHHhccccCCEEEEE
Q 023556 151 AATSSTRNLEFLK----SLGADLAIDYTKDNFED----L-----PEKFDVVYDAIG------QCDRAVKAIKEGGTVVAL 211 (280)
Q Consensus 151 ~~~~s~~~~~~l~----~lga~~vid~~~~~~~~----~-----~~g~DvV~d~~g------~~~~~l~~l~~gG~vV~~ 211 (280)
.+..+++..+.++ +.|..+-|.....+..+ . .+.||+||--.. .++.+++.|++||.+|.=
T Consensus 148 TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 148 ACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 4455566555554 46765433332222211 1 147999876544 268899999999998864
No 226
>TIGR01169 rplA_bact ribosomal protein L1, bacterial/chloroplast. This model describes bacterial (and chloroplast) ribosomal protein L1. The apparent mitochondrial L1 is sufficiently diverged to be the subject of a separate model.
Probab=27.45 E-value=1.5e+02 Score=25.51 Aligned_cols=91 Identities=22% Similarity=0.218 Sum_probs=49.3
Q ss_pred CCCcccCceE--EEecChhhHHHHHhCCCCEEEeCCCCCccccC----CCccEEEeCCCC---HHHHHhccccCCEEEEE
Q 023556 141 PLPTVPGYDV--AATSSTRNLEFLKSLGADLAIDYTKDNFEDLP----EKFDVVYDAIGQ---CDRAVKAIKEGGTVVAL 211 (280)
Q Consensus 141 ~~P~i~G~e~--~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~----~g~DvV~d~~g~---~~~~l~~l~~gG~vV~~ 211 (280)
.+|...|-+. ++.+..+..+.+++.|++.+ .. +++.+.+ ..+|+++-.... +...-+.|.|.|.+-.
T Consensus 62 ~LP~~~gk~~kV~Vfa~~~~~~~Ak~aGa~~v-g~--~eLi~~ik~~~~~fd~~iat~~~m~~l~~Lg~iLGPrGlMP~- 137 (227)
T TIGR01169 62 VLPHGTGKTVRVAVFAKGEKAEEAKAAGADYV-GS--DDLIEKIKKGWLDFDVVIATPDMMRVVGKLGRILGPRGLMPN- 137 (227)
T ss_pred ECCCCCCCCcEEEEEcCchhHHHHHHcCCCEe-CH--HHHHHHHHcCCccCCEEEECHHHHHHHHHhccccccccCCCC-
Confidence 5677677666 55556677888999999843 22 2222222 368888765442 2333344555554311
Q ss_pred cCCCCCCceEEEEeecHHHHHHHHHHHHCCCcee
Q 023556 212 TGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKP 245 (280)
Q Consensus 212 g~~~~~~~~~~~~~~~~~~l~~l~~ll~~G~l~~ 245 (280)
+. . ....+++.++++-+.+|.++.
T Consensus 138 -----~k--~---gtv~~di~~~I~~~k~g~v~~ 161 (227)
T TIGR01169 138 -----PK--T---GTVTADVAKAVKNAKKGQVEF 161 (227)
T ss_pred -----CC--C---CCccccHHHHHHHHHcCcEEE
Confidence 10 0 001246777777777775543
No 227
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=26.69 E-value=2.5e+02 Score=26.61 Aligned_cols=65 Identities=17% Similarity=0.268 Sum_probs=40.1
Q ss_pred EEecChhhHHHHHh----CCCCE--EEeCCCCCccc-cCCCccEEEe---CCC--C------------------------
Q 023556 151 AATSSTRNLEFLKS----LGADL--AIDYTKDNFED-LPEKFDVVYD---AIG--Q------------------------ 194 (280)
Q Consensus 151 ~~~~s~~~~~~l~~----lga~~--vid~~~~~~~~-~~~g~DvV~d---~~g--~------------------------ 194 (280)
+.+.++.+++.+++ +|.+. ++..+...+.. ..+.||.|+- |+| .
T Consensus 267 a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~ 346 (431)
T PRK14903 267 AVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQL 346 (431)
T ss_pred EEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHH
Confidence 67788888877754 67653 23222222221 1246998874 444 1
Q ss_pred --HHHHHhccccCCEEEEEcCCC
Q 023556 195 --CDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 195 --~~~~l~~l~~gG~vV~~g~~~ 215 (280)
+..+++.|++||++|......
T Consensus 347 ~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 347 RIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred HHHHHHHHhcCCCCEEEEEECCC
Confidence 457888999999988765543
No 228
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=26.61 E-value=2.3e+02 Score=23.39 Aligned_cols=82 Identities=27% Similarity=0.360 Sum_probs=49.5
Q ss_pred EEecChhhHHHHHh----CCCC--EEEeCCCCCccccCCCccEEEe-CCCC----HHHHHhccccCCEEEEEcCCCCCCc
Q 023556 151 AATSSTRNLEFLKS----LGAD--LAIDYTKDNFEDLPEKFDVVYD-AIGQ----CDRAVKAIKEGGTVVALTGAVTPPG 219 (280)
Q Consensus 151 ~~~~s~~~~~~l~~----lga~--~vid~~~~~~~~~~~g~DvV~d-~~g~----~~~~l~~l~~gG~vV~~g~~~~~~~ 219 (280)
.+.++..|..+++. +|-+ .++..+.++ ......+|+|+- +++. +..+...++++|+++.+-+..
T Consensus 77 LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~~l~~l~~~~~~~l~~~G~~l~~KG~~---- 151 (184)
T PF02527_consen 77 LVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVAPLDKLLELARPLLKPGGRLLAYKGPD---- 151 (184)
T ss_dssp EEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSSSHHHHHHHHGGGEEEEEEEEEEESS-----
T ss_pred EEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhcCHHHHHHHHHHhcCCCCEEEEEcCCC----
Confidence 56677788888865 5644 455555444 223467999987 4553 566777789999999885533
Q ss_pred eEEEEeecHHHHHHHHHHHHCCCce
Q 023556 220 FRFVVTSNGEVLKKLNPYLESGKVK 244 (280)
Q Consensus 220 ~~~~~~~~~~~l~~l~~ll~~G~l~ 244 (280)
..+.++++.+-+..-.++
T Consensus 152 -------~~~El~~~~~~~~~~~~~ 169 (184)
T PF02527_consen 152 -------AEEELEEAKKAWKKLGLK 169 (184)
T ss_dssp --------HHHHHTHHHHHHCCCEE
T ss_pred -------hHHHHHHHHhHHHHhCCE
Confidence 345555555555544443
No 229
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=26.60 E-value=1.8e+02 Score=24.97 Aligned_cols=59 Identities=19% Similarity=0.132 Sum_probs=38.4
Q ss_pred EEecChhhHHHHHhCCCCEEEeCCCCCccccCCCccEEEeCCC---------CHHHHHhccccCCEEEEE
Q 023556 151 AATSSTRNLEFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG---------QCDRAVKAIKEGGTVVAL 211 (280)
Q Consensus 151 ~~~~s~~~~~~l~~lga~~vid~~~~~~~~~~~g~DvV~d~~g---------~~~~~l~~l~~gG~vV~~ 211 (280)
.++.++.-.+.+++-+.+. +..+-.++. ..+.+|+|+-... .+..+.+.|+|||+++..
T Consensus 58 gvD~s~~~~~~a~~~~~~~-~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 58 ALDSSPEMVAAARERGVDA-RTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred EEECCHHHHHHHHhcCCcE-EEcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 5667777777777766543 322222231 1257999987543 257888899999999875
No 230
>PRK05954 precorrin-8X methylmutase; Provisional
Probab=26.26 E-value=1.6e+02 Score=24.90 Aligned_cols=59 Identities=22% Similarity=0.243 Sum_probs=39.4
Q ss_pred HHHHHhccccCCEEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhC
Q 023556 195 CDRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETN 268 (280)
Q Consensus 195 ~~~~l~~l~~gG~vV~~g~~~~~~~~~~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~ 268 (280)
++.+++.+ ++| ++.+|..+ ..|-++++++++|.++|....-.+.+|-+..|+=+.|.+.
T Consensus 113 m~~a~~~~-~~~-IvvIGNAP-------------TAL~~l~eli~~g~~~PalVIg~PVGFV~A~ESKe~L~~~ 171 (203)
T PRK05954 113 LLKCAQQY-PEA-IYVIGNAP-------------TALLALCQQIRAGRVKPSLVIGVPVGFVSVVEAKQALAQL 171 (203)
T ss_pred HHHHHHHC-CCC-EEEEeCCH-------------HHHHHHHHHHHcCCCCCCEEEEECCcccCHHHHHHHHHhC
Confidence 34444432 445 77777644 8999999999999888754322367777777777777554
No 231
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=26.10 E-value=50 Score=27.84 Aligned_cols=61 Identities=26% Similarity=0.280 Sum_probs=35.6
Q ss_pred EEecChhhHHHHHh-CC-CCEE--EeCCCCCccccCCCccEEEeC-CC----C-------HHHHHhccccCCEEEEEc
Q 023556 151 AATSSTRNLEFLKS-LG-ADLA--IDYTKDNFEDLPEKFDVVYDA-IG----Q-------CDRAVKAIKEGGTVVALT 212 (280)
Q Consensus 151 ~~~~s~~~~~~l~~-lg-a~~v--id~~~~~~~~~~~g~DvV~d~-~g----~-------~~~~l~~l~~gG~vV~~g 212 (280)
+++.++.-.+.+++ ++ ..+| +-..-+.+. -.++||+|+.. ++ . +......|+|||.+|...
T Consensus 70 avDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~-P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 70 AVDISPRALARARERLAGLPHVEWIQADVPEFW-PEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC-CCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 78888888888875 43 2222 222112211 12689999986 44 1 466777899999999853
No 232
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=25.93 E-value=1.4e+02 Score=28.32 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=22.5
Q ss_pred CccEEEeCCC---CHHHHHhccccCCEEEEEcCC
Q 023556 184 KFDVVYDAIG---QCDRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 184 g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~ 214 (280)
|+|+||+|+| ..+.+...++.|.+-|.+...
T Consensus 174 gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap 207 (421)
T PLN02272 174 GAEYVVESSGVFTTVEKASAHLKGGAKKVVISAP 207 (421)
T ss_pred CCCEEEEcCchhccHHHHHHHhhCCCCEEEECCC
Confidence 8999999999 456777788877644444433
No 233
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=25.66 E-value=1.1e+02 Score=27.34 Aligned_cols=51 Identities=25% Similarity=0.385 Sum_probs=31.9
Q ss_pred HHHHHhCCCCEEEeCCCCCcccc--CCCccEEEeCCC---CHHHHHhccccCCEEEEEcC
Q 023556 159 LEFLKSLGADLAIDYTKDNFEDL--PEKFDVVYDAIG---QCDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 159 ~~~l~~lga~~vid~~~~~~~~~--~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~ 213 (280)
+++.+++|.....+ ++.+. ..++|+||+|++ ..+.+..+++.|=.++....
T Consensus 41 la~A~~~Gi~~~~~----~~e~ll~~~dIDaV~iaTp~~~H~e~a~~al~aGk~VIdekP 96 (285)
T TIGR03215 41 LARARELGVKTSAE----GVDGLLANPDIDIVFDATSAKAHARHARLLAELGKIVIDLTP 96 (285)
T ss_pred HHHHHHCCCCEEEC----CHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHcCCEEEECCc
Confidence 46778888765442 12222 247999999998 35666666666656655433
No 234
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.48 E-value=1.1e+02 Score=27.44 Aligned_cols=55 Identities=22% Similarity=0.295 Sum_probs=40.1
Q ss_pred HHHHhCCCCEE-EeCCCCCccccCCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCC
Q 023556 160 EFLKSLGADLA-IDYTKDNFEDLPEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 160 ~~l~~lga~~v-id~~~~~~~~~~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~ 215 (280)
.+|...|++.. .+.+..++.+..+..|+|+-++| .+-.. +++++|-.+|.+|...
T Consensus 176 ~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG~~~~i~~-~~ik~gavVIDVGin~ 233 (285)
T PRK14189 176 MLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNVLTA-DMVKPGATVIDVGMNR 233 (285)
T ss_pred HHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCCCcCccCH-HHcCCCCEEEEccccc
Confidence 45566787764 34555566666789999999999 33222 8899999999998765
No 235
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=25.48 E-value=2.3e+02 Score=26.73 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=14.1
Q ss_pred HHHHHhccccCCEEEEEc
Q 023556 195 CDRAVKAIKEGGTVVALT 212 (280)
Q Consensus 195 ~~~~l~~l~~gG~vV~~g 212 (280)
+..++++|++||++|...
T Consensus 362 L~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 362 LESVAQYLKKGGILVYST 379 (444)
T ss_pred HHHHHHHcCCCCEEEEEc
Confidence 456778899999998643
No 236
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=25.19 E-value=92 Score=28.09 Aligned_cols=54 Identities=26% Similarity=0.402 Sum_probs=33.1
Q ss_pred hHHHHHhCCCCEEEeCCCCCccccC-----CCccEEEeCCC---CHHHHHhccccCCEEEEEcCCC
Q 023556 158 NLEFLKSLGADLAIDYTKDNFEDLP-----EKFDVVYDAIG---QCDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 158 ~~~~l~~lga~~vid~~~~~~~~~~-----~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~g~~~ 215 (280)
.+++++++|....++ ++.+.+ .++|+||++++ ..+.+.++++.|-.+|......
T Consensus 43 gla~A~~~Gi~~~~~----~ie~LL~~~~~~dIDiVf~AT~a~~H~e~a~~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 43 GLARARRLGVATSAE----GIDGLLAMPEFDDIDIVFDATSAGAHVRHAAKLREAGIRAIDLTPAA 104 (302)
T ss_pred HHHHHHHcCCCcccC----CHHHHHhCcCCCCCCEEEECCCHHHHHHHHHHHHHcCCeEEECCccc
Confidence 346677888654322 222221 57999999998 3566666666666666664433
No 237
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=24.86 E-value=4e+02 Score=23.17 Aligned_cols=60 Identities=20% Similarity=0.284 Sum_probs=34.0
Q ss_pred CceE--EEecChhhHHHH-HhCCCCEEEeCCCCCccccCCCccEEEeCCC---CHHHHHhccccCCEEEEE
Q 023556 147 GYDV--AATSSTRNLEFL-KSLGADLAIDYTKDNFEDLPEKFDVVYDAIG---QCDRAVKAIKEGGTVVAL 211 (280)
Q Consensus 147 G~e~--~~~~s~~~~~~l-~~lga~~vid~~~~~~~~~~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~ 211 (280)
+++. +.+.+.++.+.+ +.+|.. ++ .++.+...++|+|++|++ ..+.+..+++.|-.++.+
T Consensus 26 ~~elv~v~d~~~~~a~~~a~~~~~~-~~----~~~~ell~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~ 91 (265)
T PRK13304 26 NAELYAFYDRNLEKAENLASKTGAK-AC----LSIDELVEDVDLVVECASVNAVEEVVPKSLENGKDVIIM 91 (265)
T ss_pred CeEEEEEECCCHHHHHHHHHhcCCe-eE----CCHHHHhcCCCEEEEcCChHHHHHHHHHHHHcCCCEEEE
Confidence 4444 444555555544 445542 22 233444468999999988 245666677765555543
No 238
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=24.71 E-value=1.4e+02 Score=28.61 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=23.8
Q ss_pred Ccc--EEEeCCC---CHHHHHhccc-cCCEEEEEcCCC
Q 023556 184 KFD--VVYDAIG---QCDRAVKAIK-EGGTVVALTGAV 215 (280)
Q Consensus 184 g~D--vV~d~~g---~~~~~l~~l~-~gG~vV~~g~~~ 215 (280)
|+| +|+||+| .-+.+...|+ .|.+-|.+....
T Consensus 224 Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~ 261 (477)
T PRK08289 224 GINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPG 261 (477)
T ss_pred CCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCC
Confidence 899 9999999 3467778888 676666665544
No 239
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=24.46 E-value=1.2e+02 Score=26.16 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=39.3
Q ss_pred CceE-EEecChhhHHHHHh----CCCC---EEEeCCCCCccc-cCCCccEEEeCCC---------CHHHHHhccccCCEE
Q 023556 147 GYDV-AATSSTRNLEFLKS----LGAD---LAIDYTKDNFED-LPEKFDVVYDAIG---------QCDRAVKAIKEGGTV 208 (280)
Q Consensus 147 G~e~-~~~~s~~~~~~l~~----lga~---~vid~~~~~~~~-~~~g~DvV~d~~g---------~~~~~l~~l~~gG~v 208 (280)
|+++ +++.+++..+.+++ .|.. .++...-.++.. ..+.+|+|+-... .+..+.++|++||.+
T Consensus 66 g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l 145 (255)
T PRK11036 66 GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGAL 145 (255)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEE
Confidence 3444 66777777776654 3432 233222222221 1257999986432 267889999999999
Q ss_pred EEEc
Q 023556 209 VALT 212 (280)
Q Consensus 209 V~~g 212 (280)
+.+-
T Consensus 146 ~i~~ 149 (255)
T PRK11036 146 SLMF 149 (255)
T ss_pred EEEE
Confidence 8653
No 240
>PRK05575 cbiC precorrin-8X methylmutase; Validated
Probab=23.99 E-value=1.8e+02 Score=24.56 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=37.0
Q ss_pred CCEEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhC
Q 023556 205 GGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETN 268 (280)
Q Consensus 205 gG~vV~~g~~~~~~~~~~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~ 268 (280)
+|.++.+|..+ ..|-++++++++|.++|....-.+.+|=++.|+=+.|.+.
T Consensus 126 ~~~IvvIGNAP-------------TAL~~l~~li~~g~~~PalVIG~PVGFV~A~ESKe~L~~~ 176 (204)
T PRK05575 126 GVEFFVFGNAP-------------TALYKLKELIKEGKANPKFIIAVPVGFVGAAESKEELEKL 176 (204)
T ss_pred CCcEEEEeCcH-------------HHHHHHHHHHHcCCCCCCEEEEeCCccccHHHHHHHHHhC
Confidence 55577777754 7999999999999887654322367787777777777654
No 241
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=23.94 E-value=95 Score=27.08 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=25.4
Q ss_pred CCccEEEeCCC----CHHHHHhcc-ccCCEEEEEcCCC
Q 023556 183 EKFDVVYDAIG----QCDRAVKAI-KEGGTVVALTGAV 215 (280)
Q Consensus 183 ~g~DvV~d~~g----~~~~~l~~l-~~gG~vV~~g~~~ 215 (280)
..+|.||--.. .+..+.++| ++||+++.+....
T Consensus 112 ~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 112 SDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp TSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred CcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 56888865544 578999999 8999999886543
No 242
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=23.91 E-value=90 Score=26.82 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=25.1
Q ss_pred CCccEEEeCCC--C---------HHHHHhccccCCEEEEEcCC
Q 023556 183 EKFDVVYDAIG--Q---------CDRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 183 ~g~DvV~d~~g--~---------~~~~l~~l~~gG~vV~~g~~ 214 (280)
+.+|.|+|++- . .+...+.|++||+++.+...
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 57999999755 2 46777789999999988653
No 243
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=23.50 E-value=91 Score=25.24 Aligned_cols=56 Identities=23% Similarity=0.359 Sum_probs=34.3
Q ss_pred HHHHhCCCCEEE-eCCCCCccccCCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCCC
Q 023556 160 EFLKSLGADLAI-DYTKDNFEDLPEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAVT 216 (280)
Q Consensus 160 ~~l~~lga~~vi-d~~~~~~~~~~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~~ 216 (280)
.+|.+-|++..+ +.+..++.+..+..|+|+-++| .+ ---+.+++|..+|++|....
T Consensus 54 ~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G~~~~-i~~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 54 MLLLNKGATVTICHSKTKNLQEITRRADIVVSAVGKPNL-IKADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp HHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-SSSTT--B-GGGS-TTEEEEE--CEEE
T ss_pred HHHHhCCCeEEeccCCCCcccceeeeccEEeeeeccccc-cccccccCCcEEEecCCccc
Confidence 445566877544 4455667777789999999999 23 22457899999999887654
No 244
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.41 E-value=1.1e+02 Score=27.12 Aligned_cols=56 Identities=21% Similarity=0.219 Sum_probs=38.3
Q ss_pred HHHHhCCCCEE-EeCCCCCccccCCCccEEEeCCCC-HHHHHhccccCCEEEEEcCCC
Q 023556 160 EFLKSLGADLA-IDYTKDNFEDLPEKFDVVYDAIGQ-CDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 160 ~~l~~lga~~v-id~~~~~~~~~~~g~DvV~d~~g~-~~~~l~~l~~gG~vV~~g~~~ 215 (280)
.+|.+.|++.. .+.+..++.+..+++|+|+.++|. ----.+.+++|-.++++|...
T Consensus 177 ~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG~~~~v~~~~lk~gavViDvg~n~ 234 (283)
T PRK14192 177 MMLLNANATVTICHSRTQNLPELVKQADIIVGAVGKPELIKKDWIKQGAVVVDAGFHP 234 (283)
T ss_pred HHHHhCCCEEEEEeCCchhHHHHhccCCEEEEccCCCCcCCHHHcCCCCEEEEEEEee
Confidence 44566788543 355555666667899999999981 111135689999999988765
No 245
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=23.09 E-value=3.1e+02 Score=22.70 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=23.6
Q ss_pred CCccEEEeCCC---------CHHHHHhccccCCEEEEEcCC
Q 023556 183 EKFDVVYDAIG---------QCDRAVKAIKEGGTVVALTGA 214 (280)
Q Consensus 183 ~g~DvV~d~~g---------~~~~~l~~l~~gG~vV~~g~~ 214 (280)
+.+|+|+-..+ .+..+.++|++||+++.+...
T Consensus 120 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred CCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence 56898875322 267888999999999887543
No 246
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=22.95 E-value=4e+02 Score=23.37 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=35.8
Q ss_pred cCceE--EEecChhhHH-HHHhCCCCEEEeCCCCCccccCCCccEEEeCCC---CHHHHHhccccCCEEEEE
Q 023556 146 PGYDV--AATSSTRNLE-FLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG---QCDRAVKAIKEGGTVVAL 211 (280)
Q Consensus 146 ~G~e~--~~~~s~~~~~-~l~~lga~~vid~~~~~~~~~~~g~DvV~d~~g---~~~~~l~~l~~gG~vV~~ 211 (280)
+|++. +.+.++++.+ ++.++|....+ .++.+....+|+|+.|++ ..+.+..+|+.|-.++..
T Consensus 30 ~~~el~aV~dr~~~~a~~~a~~~g~~~~~----~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~ 97 (271)
T PRK13302 30 PGLTLSAVAVRDPQRHADFIWGLRRPPPV----VPLDQLATHADIVVEAAPASVLRAIVEPVLAAGKKAIVL 97 (271)
T ss_pred CCeEEEEEECCCHHHHHHHHHhcCCCccc----CCHHHHhcCCCEEEECCCcHHHHHHHHHHHHcCCcEEEe
Confidence 35565 3344455543 44556643222 233444467899999988 245667777777666643
No 247
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=22.81 E-value=67 Score=27.18 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=24.3
Q ss_pred CCccEEEeCCC--C-HHHHHhccccCCEEEEEcC
Q 023556 183 EKFDVVYDAIG--Q-CDRAVKAIKEGGTVVALTG 213 (280)
Q Consensus 183 ~g~DvV~d~~g--~-~~~~l~~l~~gG~vV~~g~ 213 (280)
..||.|+-+.+ . -...++.|++||++|.--.
T Consensus 140 apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS--HHHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEc
Confidence 57999998876 3 3688899999999998544
No 248
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=22.75 E-value=2.4e+02 Score=22.26 Aligned_cols=66 Identities=29% Similarity=0.283 Sum_probs=40.8
Q ss_pred CceE-EEecChhhHHHHHhCCCCEEEeCCCCC---ccccCCCccEEEeCCCC-------HHHHHhccccCC--EEEEEcC
Q 023556 147 GYDV-AATSSTRNLEFLKSLGADLAIDYTKDN---FEDLPEKFDVVYDAIGQ-------CDRAVKAIKEGG--TVVALTG 213 (280)
Q Consensus 147 G~e~-~~~~s~~~~~~l~~lga~~vid~~~~~---~~~~~~g~DvV~d~~g~-------~~~~l~~l~~gG--~vV~~g~ 213 (280)
|+++ +.++++++.+. ..+.+ ++..+-.+ +.+.++++|+||++.|. +...++.++..| ++|.++.
T Consensus 22 ~~~V~~~~R~~~~~~~--~~~~~-~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~ 98 (183)
T PF13460_consen 22 GHEVTALVRSPSKAED--SPGVE-IIQGDLFDPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSS 98 (183)
T ss_dssp TSEEEEEESSGGGHHH--CTTEE-EEESCTTCHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CCEEEEEecCchhccc--ccccc-cceeeehhhhhhhhhhhhcchhhhhhhhhcccccccccccccccccccccceeeec
Confidence 3555 67777777766 44443 33322222 33345799999999882 456666665554 8888776
Q ss_pred CC
Q 023556 214 AV 215 (280)
Q Consensus 214 ~~ 215 (280)
..
T Consensus 99 ~~ 100 (183)
T PF13460_consen 99 AG 100 (183)
T ss_dssp TT
T ss_pred cc
Confidence 55
No 249
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.73 E-value=1.3e+02 Score=26.06 Aligned_cols=53 Identities=23% Similarity=0.422 Sum_probs=35.8
Q ss_pred HHHHhCCCCEEEeCCCCCccc----c-----CCCccEEEeCCC------CHHHHHhccccCCEEEEEc
Q 023556 160 EFLKSLGADLAIDYTKDNFED----L-----PEKFDVVYDAIG------QCDRAVKAIKEGGTVVALT 212 (280)
Q Consensus 160 ~~l~~lga~~vid~~~~~~~~----~-----~~g~DvV~d~~g------~~~~~l~~l~~gG~vV~~g 212 (280)
++.+..|+++-|+.......+ . .+.+|.+|--.- -++.+++++++||.++.=.
T Consensus 116 ~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 116 ELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEec
Confidence 444557888887765543222 1 256999975443 2689999999999888654
No 250
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=21.94 E-value=95 Score=27.42 Aligned_cols=61 Identities=25% Similarity=0.485 Sum_probs=33.8
Q ss_pred EEecChhhHHHHHh----CCCCEEEeCCCCCccccCCCccEEEeC-----CC--C----HHHHHhccccCCEEEEE
Q 023556 151 AATSSTRNLEFLKS----LGADLAIDYTKDNFEDLPEKFDVVYDA-----IG--Q----CDRAVKAIKEGGTVVAL 211 (280)
Q Consensus 151 ~~~~s~~~~~~l~~----lga~~vid~~~~~~~~~~~g~DvV~d~-----~g--~----~~~~l~~l~~gG~vV~~ 211 (280)
.++.|++..+++++ .|...-+.....++.+....+|.|+-. +| . ++.+-+.|+|||+++.-
T Consensus 90 gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 90 GITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred EEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 56677777777653 553211111122444444589988653 44 1 67888899999998753
No 251
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=21.82 E-value=1.5e+02 Score=26.64 Aligned_cols=40 Identities=30% Similarity=0.425 Sum_probs=26.0
Q ss_pred EEecChhhH-HHHHhCCCCEEEeCCCCCccccCCCccEEEeCCC
Q 023556 151 AATSSTRNL-EFLKSLGADLAIDYTKDNFEDLPEKFDVVYDAIG 193 (280)
Q Consensus 151 ~~~~s~~~~-~~l~~lga~~vid~~~~~~~~~~~g~DvV~d~~g 193 (280)
++..++++. ++++++|+. ++++. ++.+....+|+||.|++
T Consensus 207 v~~r~~~ra~~la~~~g~~-~~~~~--~~~~~l~~aDvVi~at~ 247 (311)
T cd05213 207 IANRTYERAEELAKELGGN-AVPLD--ELLELLNEADVVISATG 247 (311)
T ss_pred EEeCCHHHHHHHHHHcCCe-EEeHH--HHHHHHhcCCEEEECCC
Confidence 455555665 566778874 44432 34444577999999998
No 252
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=21.64 E-value=1.9e+02 Score=20.22 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=25.4
Q ss_pred CccEEEeCCC-C-------HHHHHhccccCCEEEEEcCCC
Q 023556 184 KFDVVYDAIG-Q-------CDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 184 g~DvV~d~~g-~-------~~~~l~~l~~gG~vV~~g~~~ 215 (280)
.+|..+|+.| . +.++++-+.+|+.+..+...+
T Consensus 7 ~~~~~lD~~Gl~CP~Pll~~kk~l~~l~~G~~l~V~~dd~ 46 (81)
T PRK00299 7 SPDHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIIADDP 46 (81)
T ss_pred CcCeEEecCCCCCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence 4788999988 2 588999999999888776644
No 253
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.40 E-value=1.4e+02 Score=26.85 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=37.1
Q ss_pred HHHHhCCCCEEEe-CCCCCccccCCCccEEEeCCCC---HHHHHhccccCCEEEEEcCCC
Q 023556 160 EFLKSLGADLAID-YTKDNFEDLPEKFDVVYDAIGQ---CDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 160 ~~l~~lga~~vid-~~~~~~~~~~~g~DvV~d~~g~---~~~~l~~l~~gG~vV~~g~~~ 215 (280)
.+|.+-|++..+- .+..++.+..+..|+|+-|+|. +... .+++|..+|.+|...
T Consensus 176 ~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~~~v~~~--~lk~GavVIDvGin~ 233 (296)
T PRK14188 176 QLLLAANATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGD--WIKPGATVIDVGINR 233 (296)
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEecCChhhcchh--eecCCCEEEEcCCcc
Confidence 3444557765443 4555666666889999999993 3332 389999999998765
No 254
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=21.23 E-value=3.5e+02 Score=22.15 Aligned_cols=30 Identities=13% Similarity=0.344 Sum_probs=21.4
Q ss_pred CCccEEEeCCC-----------CHHHHHhccccCCEEEEEc
Q 023556 183 EKFDVVYDAIG-----------QCDRAVKAIKEGGTVVALT 212 (280)
Q Consensus 183 ~g~DvV~d~~g-----------~~~~~l~~l~~gG~vV~~g 212 (280)
+.+|+|+.+.. .+..+.++|++||.++.+.
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 46999986522 2567788899999966553
No 255
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=21.09 E-value=80 Score=23.50 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=19.7
Q ss_pred CccEEEeCCCC---HHHHHhccccCCEEEEE
Q 023556 184 KFDVVYDAIGQ---CDRAVKAIKEGGTVVAL 211 (280)
Q Consensus 184 g~DvV~d~~g~---~~~~l~~l~~gG~vV~~ 211 (280)
..|+|+||++. .+...++|+.|=.+|..
T Consensus 59 ~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~ 89 (117)
T PF03447_consen 59 DIDVVVECTSSEAVAEYYEKALERGKHVVTA 89 (117)
T ss_dssp T-SEEEE-SSCHHHHHHHHHHHHTTCEEEES
T ss_pred CCCEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 79999999772 45677778888787765
No 256
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.59 E-value=1.4e+02 Score=26.63 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=39.9
Q ss_pred HHHHhCCCCEEE-eCCCCCccccCCCccEEEeCCC--CHHHHHhccccCCEEEEEcCCC
Q 023556 160 EFLKSLGADLAI-DYTKDNFEDLPEKFDVVYDAIG--QCDRAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 160 ~~l~~lga~~vi-d~~~~~~~~~~~g~DvV~d~~g--~~~~~l~~l~~gG~vV~~g~~~ 215 (280)
.+|.+-|++..+ +.+..++.+..+..|+|+-++| .+ ---+++++|..+|.+|...
T Consensus 177 ~lL~~~~atVt~chs~T~~l~~~~~~ADIvIsAvGk~~~-i~~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 177 MLLTEMNATVTLCHSKTQNLPSIVRQADIIVGAVGKPEF-IKADWISEGAVLLDAGYNP 234 (284)
T ss_pred HHHHHCCCEEEEeCCCCCCHHHHHhhCCEEEEeCCCcCc-cCHHHcCCCCEEEEecCcc
Confidence 444555776554 5566667666789999999999 33 2267799999999998754
No 257
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=20.49 E-value=4.6e+02 Score=23.81 Aligned_cols=110 Identities=17% Similarity=0.246 Sum_probs=62.1
Q ss_pred cChHHHHHHcCCCCCCCCCCCcccCceE----EEe---cChhh--HHHHHhCCCCEEE-eCCCCC------------ccc
Q 023556 123 LNPVDGKRRQGKFKATDSPLPTVPGYDV----AAT---SSTRN--LEFLKSLGADLAI-DYTKDN------------FED 180 (280)
Q Consensus 123 l~~~D~~~~~g~~~~~~~~~P~i~G~e~----~~~---~s~~~--~~~l~~lga~~vi-d~~~~~------------~~~ 180 (280)
+...+.++..|+|.... .....+|++. +.+ .+-.+ ..+++.+|...++ +.+... +.+
T Consensus 118 ~~~~~~~~r~g~w~~~~-~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~e 196 (324)
T COG1052 118 IHEGDRRVREGNWSLSG-GPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDE 196 (324)
T ss_pred hHHHHHHHhcCcccccC-CcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHH
Confidence 34456666778775321 2233555555 222 22222 2455667776433 222100 112
Q ss_pred cCCCccEEEeCCC-C------H-HHHHhccccCCEEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCcee
Q 023556 181 LPEKFDVVYDAIG-Q------C-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKP 245 (280)
Q Consensus 181 ~~~g~DvV~d~~g-~------~-~~~l~~l~~gG~vV~~g~~~~~~~~~~~~~~~~~~l~~l~~ll~~G~l~~ 245 (280)
..+..|+|.-..+ + + .+.++.+++|+.+|..+.... -+-+.+.+.+++|++..
T Consensus 197 ll~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~------------VDe~ALi~AL~~g~i~g 257 (324)
T COG1052 197 LLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGL------------VDEQALIDALKSGKIAG 257 (324)
T ss_pred HHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccc------------cCHHHHHHHHHhCCcce
Confidence 2367898877654 1 2 688999999999999866441 13456777778888764
No 258
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=20.46 E-value=3.1e+02 Score=23.99 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=16.3
Q ss_pred HHHHhccccCCEEEEEcCCCC
Q 023556 196 DRAVKAIKEGGTVVALTGAVT 216 (280)
Q Consensus 196 ~~~l~~l~~gG~vV~~g~~~~ 216 (280)
..+..+|.+||.++.+...+.
T Consensus 128 k~a~~lM~~ggSiltLtYlgs 148 (259)
T COG0623 128 KAARPLMNNGGSILTLTYLGS 148 (259)
T ss_pred HHHHHhcCCCCcEEEEEeccc
Confidence 455667899999999987763
No 259
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=20.45 E-value=96 Score=28.49 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=18.6
Q ss_pred CccEEEeCCC---CHHHHHhccccCC
Q 023556 184 KFDVVYDAIG---QCDRAVKAIKEGG 206 (280)
Q Consensus 184 g~DvV~d~~g---~~~~~l~~l~~gG 206 (280)
++|+||+|+| ....++..++.|.
T Consensus 92 gvDiVie~TG~f~~~~~a~~hl~~Ga 117 (342)
T PTZ00353 92 GVQYVVECTGLYSTRSRCWGHVTGGA 117 (342)
T ss_pred CCCEEEEcccccccHhhhhhhhhcCC
Confidence 8999999999 3677788887653
No 260
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=20.42 E-value=6.1e+02 Score=23.72 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=16.7
Q ss_pred EEeCCC--CHHHHHhc-cccCCEEEEEcCC
Q 023556 188 VYDAIG--QCDRAVKA-IKEGGTVVALTGA 214 (280)
Q Consensus 188 V~d~~g--~~~~~l~~-l~~gG~vV~~g~~ 214 (280)
++...| .++.++.. +.||++++.+...
T Consensus 60 ll~gsGt~amEAav~sl~~pgdkVLv~~nG 89 (383)
T COG0075 60 LLSGSGTLAMEAAVASLVEPGDKVLVVVNG 89 (383)
T ss_pred EEcCCcHHHHHHHHHhccCCCCeEEEEeCC
Confidence 344455 46655554 5788888887443
No 261
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=20.36 E-value=1.5e+02 Score=25.84 Aligned_cols=82 Identities=16% Similarity=0.122 Sum_probs=45.6
Q ss_pred EEecChHHHHHHcCCCCCCCCCCCcccCceEEEecChhhHHHHH----hCCCCEEEeCCCCCcccc----------CCCc
Q 023556 120 AAALNPVDGKRRQGKFKATDSPLPTVPGYDVAATSSTRNLEFLK----SLGADLAIDYTKDNFEDL----------PEKF 185 (280)
Q Consensus 120 aagl~~~D~~~~~g~~~~~~~~~P~i~G~e~~~~~s~~~~~~l~----~lga~~vid~~~~~~~~~----------~~g~ 185 (280)
.+++.++-+++..+..+ -|+=..+..+++..+.++ +.|...-|.....+..+. .+.|
T Consensus 87 GT~~GySal~la~al~~---------~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 87 GVYTGYSLLATALALPE---------DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred eChhhHHHHHHHhhCCC---------CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 34555666666655321 022114445555555554 457544444433332221 1479
Q ss_pred cEEEeCCC------CHHHHHhccccCCEEEE
Q 023556 186 DVVYDAIG------QCDRAVKAIKEGGTVVA 210 (280)
Q Consensus 186 DvV~d~~g------~~~~~l~~l~~gG~vV~ 210 (280)
|+||--.. -++.+++.|++||-+|.
T Consensus 158 D~iFiDadK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 158 DFIFVDADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 99976543 26888999999999775
No 262
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=20.28 E-value=1.5e+02 Score=23.34 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=37.0
Q ss_pred HHHHhCCCCEEE-eCCCCCccccCCCccEEEeCCCCHH-HHHhccccCCEEEEEcCCC
Q 023556 160 EFLKSLGADLAI-DYTKDNFEDLPEKFDVVYDAIGQCD-RAVKAIKEGGTVVALTGAV 215 (280)
Q Consensus 160 ~~l~~lga~~vi-d~~~~~~~~~~~g~DvV~d~~g~~~-~~l~~l~~gG~vV~~g~~~ 215 (280)
.+|.+-|++..+ +.+..++.+..+..|+|+-++|.-. ---+.+++|-.++.+|...
T Consensus 46 ~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~i~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 46 CLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATVINCSPTK 103 (140)
T ss_pred HHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCCccCHHHcCCCCEEEEcCCCc
Confidence 344455776543 4445566667789999999999211 1245589999999877544
No 263
>PLN02928 oxidoreductase family protein
Probab=20.27 E-value=3.5e+02 Score=24.74 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=36.4
Q ss_pred CCCccEEEeCCC-C------H-HHHHhccccCCEEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCce
Q 023556 182 PEKFDVVYDAIG-Q------C-DRAVKAIKEGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVK 244 (280)
Q Consensus 182 ~~g~DvV~d~~g-~------~-~~~l~~l~~gG~vV~~g~~~~~~~~~~~~~~~~~~l~~l~~ll~~G~l~ 244 (280)
....|+|+.+.. + + ...+..|++|..+|.++.... -+-+.+.+.+++|++.
T Consensus 224 l~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~l------------Vde~AL~~AL~~g~i~ 282 (347)
T PLN02928 224 AGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGL------------LDYDAVLAALESGHLG 282 (347)
T ss_pred HhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccc------------cCHHHHHHHHHcCCee
Confidence 357899999875 1 2 688999999999999865431 1335566677788775
No 264
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=20.12 E-value=95 Score=26.15 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=36.5
Q ss_pred cCCEEEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCCC
Q 023556 204 EGGTVVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNKA 270 (280)
Q Consensus 204 ~gG~vV~~g~~~~~~~~~~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~~ 270 (280)
.+|.++.+|.. ...|-++++++++|.++|....-.+.+|=++.|+-+.|.+...
T Consensus 118 ~~~~I~vIGNA-------------PTAL~~ll~li~~~~~~PalVIg~PVGFV~A~ESKe~L~~~~v 171 (198)
T PF02570_consen 118 LPGAIVVIGNA-------------PTALFELLELIEEGGVRPALVIGVPVGFVGAAESKEALMQSGV 171 (198)
T ss_dssp TTTCEEEESS--------------HHHHHHHHHHHHTTT-TTSEEEE---SSSSHHHHHHHHHHSTS
T ss_pred cCCcEEEEeCc-------------HHHHHHHHHHHHhcCCCCcEEEECCCcccCcHHHHHHHHhCCC
Confidence 45666666664 4899999999999998875432236788888888888877643
No 265
>PRK05953 precorrin-8X methylmutase; Validated
Probab=20.02 E-value=2.1e+02 Score=24.29 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=36.0
Q ss_pred EEEEcCCCCCCceEEEEeecHHHHHHHHHHHHCCCceeecCCCcccchhhHHHHHHHHHhCC
Q 023556 208 VVALTGAVTPPGFRFVVTSNGEVLKKLNPYLESGKVKPIIDPKGPFPFSQVVEAFSYIETNK 269 (280)
Q Consensus 208 vV~~g~~~~~~~~~~~~~~~~~~l~~l~~ll~~G~l~~~~~~~~~~~l~~v~~A~~~l~~~~ 269 (280)
++.+|..+ ..|-++++++++|.++|....-.+.+|-.+.|+=+.|.+..
T Consensus 122 IvvIGNAP-------------TAL~~l~~li~~g~~~PalVIG~PVGFV~AaESKe~L~~~~ 170 (208)
T PRK05953 122 IFVIGQSQ-------------TALTALVELVEAEEIRPALVIATPAGFIDADDAKERLQDSL 170 (208)
T ss_pred EEEEeCcH-------------HHHHHHHHHHHhcCCCCCEEEEeCCcccCcHHHHHHHHhCC
Confidence 77777644 78999999999998887543323677877777777776543
Done!