BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023557
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 113/259 (43%), Gaps = 17/259 (6%)
Query: 25 ALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTN 84
A++D +AR D S L++ +G + + E + S P +GGS N
Sbjct: 14 AIVDIIARCDDSFLEENGIIKGAXNLINADRAELLYSRX--------GPAVEASGGSAGN 65
Query: 85 TIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RGPTGQCVCLVDAS 143
T G++ G G DDQ G++F +++ GV + PT + V
Sbjct: 66 TAAGVA-SLGGRAAYFGKVADDQLGEIFTHDIRAQGVHFQTKPLDGHPPTARSXIFVTED 124
Query: 144 GNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFN----FEVIQAAIRIAKQEGLS 199
G R+ L V++ +++ + V SK +++ + I+ A RIA G
Sbjct: 125 GERSXNTYLGACVELGPEDVEDDVVAQSKVTYFEGYLWDPPRAKDAIREAARIAHAHGRE 184
Query: 200 VSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFLAKRC 259
+ L+ V +R+ L+L SG VD+ FAN EA L E D + ALE LA+ C
Sbjct: 185 TAXTLSDSFCVHRYRSEFLELXRSGTVDIVFANRQEALALY---ETEDFDRALELLARDC 241
Query: 260 QWAVVTLGPNGCIAKHGKE 278
+ A VTL G + G E
Sbjct: 242 KLAAVTLSEEGSVVVRGAE 260
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 119/284 (41%), Gaps = 22/284 (7%)
Query: 1 MGAEHLIINREASQAALILGLQPAALIDHVARV-DWSLLDQIPGERGGSIPVAIEELEHI 59
+G E+L L +G A++D ++R D L+D I A L I
Sbjct: 13 LGTENLYFQSXTRFDVLTVG---NAIVDIISRCNDQFLIDN-------QITKAAXNL--I 60
Query: 60 LSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFS 119
+E + P +GGS NT G++ G G DQ G +F +++
Sbjct: 61 DAERAELLYSRXGPALEASGGSAGNTAAGVA-NLGGKAAYFGNVAADQLGDIFTHDIRAQ 119
Query: 120 GVDV-SRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRF 178
GV ++ + PT + V G R+ L V++ +++ A+ V +K
Sbjct: 120 GVHYQTKPKGAFPPTARSXIFVTEDGERSXNTYLGACVELGPEDVEADVVADAKVTYFEG 179
Query: 179 GMFNFEVIQAAI----RIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANED 234
+++ + AI RIA Q G S L+ V +R L L SG VD+ FAN
Sbjct: 180 YLWDPPRAKEAILDCARIAHQHGREXSXTLSDSFCVDRYRGEFLDLXRSGKVDIVFANRQ 239
Query: 235 EAAELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKE 278
EA L + + D E AL +A C+ A VT NG + G+E
Sbjct: 240 EALSLYQTD---DFEEALNRIAADCKIAAVTXSENGAVILKGRE 280
>pdb|3B3L|A Chain A, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|B Chain B, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|C Chain C, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|D Chain D, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
Length = 298
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 34/212 (16%)
Query: 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RGPTGQCV 137
GG+ +N+ LS+ G PC +G+ V++ + GVDVS++ + +G T
Sbjct: 40 GGNASNSCTVLSL-LGAPCAFMGSMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTPSSC 98
Query: 138 CLVDAS-GNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRI---- 192
C+++ S GNRT+ ++ + A + D+ KW+ + G E ++ RI
Sbjct: 99 CIINNSNGNRTIVLHDTSLPDVSATDFEKVDLTQFKWIHIE-GRNASEQVKMLQRIDAHN 157
Query: 193 ---AKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSE 249
++ + VS++ V R L QL GDV F ++D A L G ++A E
Sbjct: 158 TRQPPEQKIRVSVE------VEKPREELFQLFGYGDV--VFVSKDVAKHL--GFQSA--E 205
Query: 250 AALEFLAKR--------CQWA---VVTLGPNG 270
AL L R C WA LGP+G
Sbjct: 206 EALRGLYGRVRKGAVLVCAWAEEGADALGPDG 237
>pdb|3NBV|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBV|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBW|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NBW|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NC2|A Chain A, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC2|B Chain B, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC9|A Chain A, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NC9|B Chain B, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NCA|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3NCA|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3RO4|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3RO4|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3Q92|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3Q92|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3QA2|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QA2|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QAI|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
pdb|3QAI|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
Length = 313
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 34/212 (16%)
Query: 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RGPTGQCV 137
GG+ +N+ LS+ G PC +G+ V++ + GVDVS++ + +G T
Sbjct: 55 GGNASNSCTVLSL-LGAPCAFMGSMAPGHVADFLVADFRRRGVDVSQVAWQSKGDTPSSC 113
Query: 138 CLVDAS-GNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRI---- 192
C+++ S GNRT+ ++ + A + D+ KW+ + G E ++ RI
Sbjct: 114 CIINNSNGNRTIVLHDTSLPDVSATDFEKVDLTQFKWIHIE-GRNASEQVKMLQRIDAHN 172
Query: 193 ---AKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSE 249
++ + VS++ V R L QL GDV F ++D A L G ++A E
Sbjct: 173 TRQPPEQKIRVSVE------VEKPREELFQLFGYGDV--VFVSKDVAKHL--GFQSA--E 220
Query: 250 AALEFLAKR--------CQWA---VVTLGPNG 270
AL L R C WA LGP+G
Sbjct: 221 EALRGLYGRVRKGAVLVCAWAEEGADALGPDG 252
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 103/225 (45%), Gaps = 19/225 (8%)
Query: 26 LIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNT 85
L+D A V+ LL++ + +I +A E+ + E L E + IAGGSV N+
Sbjct: 33 LLDISAVVEKDLLNKYDMQPNNAI-LAEEKHMPMYQE-----LIEKYQAEYIAGGSVQNS 86
Query: 86 IRGLSVGFGVPCGLI--GAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDAS 143
+R P I G G D+ ++ +GV+V R PTG C LV +
Sbjct: 87 LRVAQWILQRPRTAIFFGCVGQDEYARILEERATSNGVNVQYQRSATSPTGTCAVLVTGT 146
Query: 144 GNRTMRPCLSNAVKIQADELIAED----VKGSKWLVLRFGMFNFEVIQAAIRIAKQ---E 196
R++ L+ A + L ++ ++G+++ + G F ++A+ +AK+
Sbjct: 147 -QRSLCANLAAANDFTPEHLRSDGNRAYLQGAQFFYVS-GFFFTVSFESALSVAKEAAAT 204
Query: 197 GLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241
G M+L++ + + ++ L ++ VD+ F NE EA L +
Sbjct: 205 GRMFMMNLSAPFVPQFYKNNLEEIFPY--VDVLFGNETEAIALAK 247
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 106/266 (39%), Gaps = 41/266 (15%)
Query: 26 LIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNT 85
++D VA V S LD+ +RG + +A E I S LD+ +P ++ GGS N+
Sbjct: 22 ILDLVAEVPSSFLDEFFLKRGDAT-LATPEQMRIYS-----TLDQFNP-TSLPGGSALNS 74
Query: 86 IRGLSVGFGVP--CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDAS 143
+R + P G +GA GDD +GQ+ G+ + TG C L++
Sbjct: 75 VRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGTCAVLINEK 134
Query: 144 GNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSV--- 200
RT+ L + I ED W G F + + L V
Sbjct: 135 -ERTLCTHLGACGSFR----IPED-----WTTFASGALIFYATAYTLTATPKNALEVAGY 184
Query: 201 ---------SMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAE------LVRGEEN 245
+++L++ V ++ + LL ++ F NE+E A LV ++
Sbjct: 185 AHGIPNAIFTLNLSAPFCVELYKDAMQSLLL--HTNILFGNEEEFAHLAKVHNLVAADKT 242
Query: 246 ADSEAALEFLAKRCQWA--VVTLGPN 269
A S A E + C A ++T G N
Sbjct: 243 ALSTANKEHAVEVCTGALRLLTAGQN 268
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 107/271 (39%), Gaps = 41/271 (15%)
Query: 26 LIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNT 85
++D VA V S LD+ +RG + +A E I S LD+ +P ++ GGS N+
Sbjct: 42 ILDLVAEVPSSFLDEFFLKRGDAT-LATPEQMRIYS-----TLDQFNPT-SLPGGSALNS 94
Query: 86 IRGLSVGFGVP--CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDAS 143
+R + P G +GA GDD +GQ+ G+ + TG C L++
Sbjct: 95 VRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLINEK 154
Query: 144 GNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSV--- 200
RT+ L + + ED W G F + + L V
Sbjct: 155 -ERTLCTHLGACGSFR----LPED-----WTTFASGALIFYATAYTLTATPKNALEVAGY 204
Query: 201 ---------SMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAE------LVRGEEN 245
+++L++ V ++ + LL ++ F NE+E A LV E+
Sbjct: 205 AHGIPNAIFTLNLSAPFCVELYKDAMQSLLL--HTNILFGNEEEFAHLAKVHNLVAAEKT 262
Query: 246 ADSEAALEFLAKRCQWA--VVTLGPNGCIAK 274
A S A E + C A ++T G N K
Sbjct: 263 ALSTANKEHAVEVCTGALRLLTAGQNTSATK 293
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 90/230 (39%), Gaps = 33/230 (14%)
Query: 26 LIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNT 85
++D VA V S LD+ +RG + +A E I S LD+ +P ++ GGS N+
Sbjct: 22 ILDLVAEVPSSFLDEFFLKRGDAT-LATPEQMRIYS-----TLDQFNP-TSLPGGSALNS 74
Query: 86 IRGLSVGFGVP--CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDAS 143
+R + P G +GA GDD +GQ+ G+ + TG C L++
Sbjct: 75 VRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGTCAVLINEK 134
Query: 144 GNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSV--- 200
RT+ L + E W G F + + L V
Sbjct: 135 -ERTLCTHLGACGSFRIPE---------NWTTFASGALIFYATAYTLTATPKNALEVAGY 184
Query: 201 ---------SMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241
+++L++ V ++ + LL ++ F NE+E A L +
Sbjct: 185 AHGIPNAIFTLNLSAPFCVELYKDAMQSLLL--HTNILFGNEEEFAHLAK 232
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 105/266 (39%), Gaps = 41/266 (15%)
Query: 26 LIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNT 85
++D VA V S LD+ +RG + +A E I S LD+ +P ++ GGS N+
Sbjct: 22 ILDLVAEVPSSFLDEFFLKRGDAT-LATPEQMRIYS-----TLDQFNP-TSLPGGSALNS 74
Query: 86 IRGLSVGFGVP--CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDAS 143
+R + P G +GA GDD +GQ+ G+ + TG C L++
Sbjct: 75 VRVVQKLLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLINEK 134
Query: 144 GNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSV--- 200
RT+ L + + ED W G F + + V
Sbjct: 135 -ERTLCTHLGACGSFR----LPED-----WTTFASGALIFYATAYTLTATPKNAFEVAGY 184
Query: 201 ---------SMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAE------LVRGEEN 245
+++L++ V ++ + LL ++ F NE+E A LV E+
Sbjct: 185 AHGIPNAIFTLNLSAPFCVELYKDAMQSLLL--HTNILFGNEEEFAHLAKVHNLVAAEKT 242
Query: 246 ADSEAALEFLAKRCQWA--VVTLGPN 269
A S A E + C A ++T G N
Sbjct: 243 ALSTANKEHAVEVCTGALRLLTAGQN 268
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 18/142 (12%)
Query: 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLR-MKRGPTGQCVCLVDASGNRTMRPC 151
GVPCG+I G+D G + + + GVD+ + + TG SG+R
Sbjct: 50 LGVPCGIISCVGNDGFGDINIHRLAADGVDIRGISVLPLEATGSAFVTYHNSGDRDFIFN 109
Query: 152 LSNAV--KIQA---DELIAEDVKGSKWLVLRFGMFNFEVIQA---AIRIAKQEGLSVSMD 203
+ NA K+ A DE I +D + + + +F+F + A A+ I K G +S D
Sbjct: 110 IKNAACGKLSAQHVDENILKDC--THFHIXGSSLFSFHXVDAVKKAVTIVKANGGVISFD 167
Query: 204 LASFEMVRNFRTPLLQLLESGD 225
N R L + E D
Sbjct: 168 -------PNIRKEXLDIPEXRD 182
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 78/192 (40%), Gaps = 14/192 (7%)
Query: 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RGPTG----QCVCLVDASGNRTM 148
G CG+I GDD+ G + ++ GVDVS +++ PTG Q V
Sbjct: 47 GNECGIIAKVGDDEFGYNAIEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVPLKSESIY 106
Query: 149 RPCLSNAVKIQADELIAEDVKG-----SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMD 203
S K+ +++ E VK S + L E + A IA ++
Sbjct: 107 YRKGSAGSKLSPEDVDEEYVKSADLVHSSGITLAISSTAKEAVYKAFEIASNRSFDTNIR 166
Query: 204 LASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFLAKRCQWAV 263
L + + +L+LL + + D+ ++++ GE +D + A + + + V
Sbjct: 167 LKLWS-AEEAKREILKLLSKFHLKFLITDTDD-SKIILGE--SDPDKAAKAFSDYAEIIV 222
Query: 264 VTLGPNGCIAKH 275
+ LGP G I +
Sbjct: 223 MKLGPKGAIVYY 234
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 87/233 (37%), Gaps = 45/233 (19%)
Query: 69 DEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM 128
+E GGS N + G S G+ G IG DDQ G+ S + GVD S L
Sbjct: 34 EETXTFSKYVGGSPANIVIG-SSKLGLKAGFIGKIADDQHGRFIESYXRGVGVDTSNL-- 90
Query: 129 KRGPTGQCVCLVDASGNRT-----------------MRPCLSNAVKIQADELIAEDVKGS 171
+VD G++T R +++ + + +E+ ++ S
Sbjct: 91 ----------VVDQEGHKTGLAFTEIKSPEECSILXYRQDVAD-LYLSPEEVNEAYIRRS 139
Query: 172 KWLVLRFGMF----NFEVIQAAIRIAKQEGLSV--SMDLASFEMVRNFRTPLLQLLESGD 225
K L++ + E + AIR+AK+ + V +D + T + L +
Sbjct: 140 KLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFELDYRPYSWETPEETAVYYSLVAEQ 199
Query: 226 VDLCFANEDEAAELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKE 278
D+ +E L E D++ + +L K P + KHG E
Sbjct: 200 SDIVIGTREEFDVLENRTEKGDNDETIRYLFKHS--------PELIVIKHGVE 244
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 114/279 (40%), Gaps = 40/279 (14%)
Query: 26 LIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVK-THILDE---PSPIKTIAGGS 81
L+D A VD LD+ +++ + IL+E K + DE ++ AGGS
Sbjct: 16 LLDISAVVDKDFLDK----------YSLKPNDQILAEDKHKELFDELVKKFKVEYHAGGS 65
Query: 82 VTNTIRGLSVGFGVP---CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVC 138
N+I+ P G G D+ G++ + VD PTG C
Sbjct: 66 TQNSIKVAQWMIQQPHKAATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCAA 125
Query: 139 LVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLR---------FGMFNFEVIQAA 189
+ NR++ L+ A + ++ + D++ + LV + F + E +
Sbjct: 126 CI-TGDNRSLIANLAAANCYKKEKHL--DLEKNWMLVEKARVCYIAGFFLTVSPESVLKV 182
Query: 190 IRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR--GEENAD 247
A + +++L++ + + ++ L++++ VD+ F NE EAA R G E D
Sbjct: 183 AHHASENNRIFTLNLSAPFISQFYKESLMKVMPY--VDILFGNETEAATFAREQGFETKD 240
Query: 248 -------SEAALEFLAKRCQWAVVTLGPNGCIAKHGKEV 279
++A + +KR + + T G + I EV
Sbjct: 241 IKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATESEV 279
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 78/195 (40%), Gaps = 25/195 (12%)
Query: 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCL-VDASGNRTMRPC 151
G CG IG GDD G+ Q +GVDV+ LR+ T + + + A G R+
Sbjct: 63 LGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERS---- 118
Query: 152 LSNAVKIQADELIA-EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQ---EGLSVSMDLASF 207
+ V AD ++ +D+ + ++ F F I R A++ EG + +
Sbjct: 119 FTYLVHPGADTYVSPQDLPPFR----QYEWFYFSSIGLTDRPAREACLEGARRXREAGGY 174
Query: 208 EMVR-NFRT---------PLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFLAK 257
+ N R+ P L + +C + DE +L D+ L L
Sbjct: 175 VLFDVNLRSKXWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQDARYYLRDLG- 233
Query: 258 RCQWAVVTLGPNGCI 272
C +++LG +G +
Sbjct: 234 -CDTTIISLGADGAL 247
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 78/195 (40%), Gaps = 25/195 (12%)
Query: 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCL-VDASGNRTMRPC 151
G CG IG GDD G+ Q +GVDV+ LR+ T + + + A G R+
Sbjct: 63 LGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERS---- 118
Query: 152 LSNAVKIQADELIA-EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQ---EGLSVSMDLASF 207
+ V AD ++ +D+ + ++ F F I R A++ EG + +
Sbjct: 119 FTYLVHPGADTYVSPQDLPPFR----QYEWFYFSSIGLTDRPAREACLEGARRMREAGGY 174
Query: 208 EMVR-NFRT---------PLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFLAK 257
+ N R+ P L + +C + DE +L D+ L L
Sbjct: 175 VLFDVNLRSKMWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQDARYYLRDLG- 233
Query: 258 RCQWAVVTLGPNGCI 272
C +++LG +G +
Sbjct: 234 -CDTTIISLGADGAL 247
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 87/209 (41%), Gaps = 25/209 (11%)
Query: 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPT 133
++ GG+ N L+ GV G +G G+D+ G + ++ GVD++ R G T
Sbjct: 28 LEVYVGGAEVNVAVALAR-LGVKVGFVGRVGEDELGAMVEERLRAEGVDLTHFRRAPGFT 86
Query: 134 GQCV--CLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQA--- 188
G + L G S + + ++G ++L L G+ +A
Sbjct: 87 GLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDYLEGVRFLHLS-GITPALSPEARAF 145
Query: 189 ---AIRIAKQEGLSVSMD------LASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAEL 239
A+ AK+ G+ VS+D L S E R F L VDL F +E+EA L
Sbjct: 146 SLWAMEEAKRRGVRVSLDVNYRQTLWSPEEARGFLERALP-----GVDLLFLSEEEAELL 200
Query: 240 V-RGEENADSEAALEFLAKR---CQWAVV 264
R EE + +A E + KR WA V
Sbjct: 201 FGRVEEALRALSAPEVVLKRGAKGAWAFV 229
>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO6|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO7|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
pdb|3GO7|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
Length = 310
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 101 GAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTM 148
GA+GDD ++++ + V + R GP+G + +VDAS T+
Sbjct: 77 GAFGDDPAAAQLRAHLRANAVGLDRTVTVPGPSGTAIIVVDASAENTV 124
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 219 QLLESGDVDLCFANEDEA---AELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCI 272
Q DV C NE EA L G EAAL L + CQ ++TLG GC+
Sbjct: 197 QFYTLSDVFCC--NESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCV 251
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 92/226 (40%), Gaps = 14/226 (6%)
Query: 60 LSEVKTHILDEPS-PIKTIA---GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSN 115
L V +I D S P++ IA GG N +S G L G D GQ + +
Sbjct: 20 LQPVSKNIFDVDSYPLERIAXTTGGDAINEATIIS-RLGHRTALXSRIGKDAAGQFILDH 78
Query: 116 MQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAV-KIQADELIAEDVKGSKW 173
+ +D+ L+ T V LV G RT + ++ K+ D++ +K
Sbjct: 79 CRKENIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWKLNIDDVDFARFSQAKL 138
Query: 174 LVLRFGMFNFEVI--QAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLES-GDVDLCF 230
L L +FN ++ +A I Q + A R L + E+ VD F
Sbjct: 139 LSLA-SIFNSPLLDGKALTEIFTQAKARQXIICADXIKPR-LNETLDDICEALSYVDYLF 196
Query: 231 ANEDEAAELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHG 276
N EA +L+ G+E D E A FLA + V+ G +GC K G
Sbjct: 197 PNFAEA-KLLTGKETLD-EIADCFLACGVKTVVIKTGKDGCFIKRG 240
>pdb|2RBC|A Chain A, Crystal Structure Of A Putative Ribokinase From
Agrobacterium Tumefaciens
Length = 343
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGP-TGQCVCLVDASGNRTMRPCLSNAVK 157
L GA GDD+ G + ++ SG+D S + G + ++D G R + P + +
Sbjct: 85 LWGAVGDDETGTRILRDLSESGIDTSGXTVAPGARSALSTIIIDNRGERLIVPFYDHRLH 144
Query: 158 IQADELIAEDV 168
+ ED+
Sbjct: 145 EKKRACTPEDI 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,024,611
Number of Sequences: 62578
Number of extensions: 315722
Number of successful extensions: 722
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 708
Number of HSP's gapped (non-prelim): 24
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)