Query 023557
Match_columns 280
No_of_seqs 159 out of 2105
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 04:57:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02379 pfkB-type carbohydrat 100.0 4.1E-40 8.9E-45 293.5 29.9 266 13-278 17-285 (367)
2 PRK15074 inosine/guanosine kin 100.0 2.4E-39 5.2E-44 291.6 29.4 257 8-275 25-294 (434)
3 PLN02813 pfkB-type carbohydrat 100.0 1.6E-36 3.6E-41 274.6 29.8 254 15-278 69-335 (426)
4 cd01168 adenosine_kinase Adeno 100.0 8.5E-34 1.8E-38 248.8 29.2 249 16-278 2-253 (312)
5 PTZ00247 adenosine kinase; Pro 100.0 3.4E-33 7.4E-38 248.1 28.6 255 13-278 3-276 (345)
6 PRK11142 ribokinase; Provision 100.0 3.2E-31 6.9E-36 231.8 23.8 225 17-278 4-234 (306)
7 cd01174 ribokinase Ribokinase 100.0 6.4E-31 1.4E-35 228.3 24.3 225 17-278 1-231 (292)
8 KOG2854 Possible pfkB family c 100.0 2.6E-31 5.7E-36 223.1 20.5 255 14-279 5-277 (343)
9 PTZ00292 ribokinase; Provision 100.0 1.5E-30 3.2E-35 229.6 24.2 236 11-278 11-254 (326)
10 PLN02548 adenosine kinase 100.0 6E-30 1.3E-34 226.3 26.9 247 21-278 1-265 (332)
11 PLN02323 probable fructokinase 100.0 3.7E-30 8E-35 227.4 24.0 232 12-278 7-249 (330)
12 cd01944 YegV_kinase_like YegV- 100.0 8.4E-30 1.8E-34 221.1 24.7 226 17-277 1-233 (289)
13 PLN02967 kinase 100.0 5.3E-30 1.2E-34 236.0 24.6 202 73-277 237-463 (581)
14 PLN02543 pfkB-type carbohydrat 100.0 8E-30 1.7E-34 232.7 22.7 242 15-276 125-404 (496)
15 COG0524 RbsK Sugar kinases, ri 100.0 3.3E-29 7.2E-34 219.6 23.9 230 17-278 1-235 (311)
16 cd01166 KdgK 2-keto-3-deoxyglu 100.0 3.4E-29 7.4E-34 217.6 21.6 227 17-278 1-238 (294)
17 cd01945 ribokinase_group_B Rib 100.0 1.2E-28 2.7E-33 213.2 23.5 220 17-278 1-223 (284)
18 cd01942 ribokinase_group_A Rib 100.0 1.3E-28 2.8E-33 212.5 23.4 218 17-278 1-222 (279)
19 PRK09850 pseudouridine kinase; 100.0 1.4E-28 3.1E-33 215.7 23.0 226 14-277 3-235 (313)
20 PLN02341 pfkB-type carbohydrat 100.0 2.2E-28 4.9E-33 224.5 24.9 243 13-278 70-338 (470)
21 cd01167 bac_FRK Fructokinases 100.0 3.4E-28 7.3E-33 211.5 23.6 222 17-279 1-233 (295)
22 cd01939 Ketohexokinase Ketohex 100.0 2.3E-28 5.1E-33 212.2 22.2 219 17-277 1-230 (290)
23 TIGR02152 D_ribokin_bact ribok 100.0 7.5E-28 1.6E-32 209.2 24.3 222 23-279 1-228 (293)
24 cd01947 Guanosine_kinase_like 100.0 2.8E-27 6E-32 202.8 23.5 209 17-278 1-209 (265)
25 COG1105 FruK Fructose-1-phosph 100.0 1.1E-27 2.4E-32 203.5 20.7 223 17-280 1-236 (310)
26 TIGR03828 pfkB 1-phosphofructo 100.0 1.6E-27 3.4E-32 208.2 21.8 219 19-278 2-232 (304)
27 PRK13508 tagatose-6-phosphate 100.0 9.9E-27 2.2E-31 203.7 24.1 220 18-278 2-234 (309)
28 PRK09954 putative kinase; Prov 100.0 1E-26 2.2E-31 207.9 24.5 223 15-277 57-288 (362)
29 PF00294 PfkB: pfkB family car 100.0 1.1E-27 2.4E-32 208.6 17.9 225 17-278 3-238 (301)
30 cd01941 YeiC_kinase_like YeiC- 100.0 7.8E-27 1.7E-31 202.3 22.2 223 18-276 2-230 (288)
31 PRK09434 aminoimidazole ribosi 100.0 1.7E-26 3.7E-31 201.8 22.8 217 17-279 4-233 (304)
32 TIGR01231 lacC tagatose-6-phos 100.0 1.9E-26 4E-31 202.0 22.7 222 19-278 2-234 (309)
33 PRK10294 6-phosphofructokinase 100.0 4.8E-26 1E-30 199.4 24.0 224 16-278 2-237 (309)
34 cd01940 Fructoselysine_kinase_ 99.9 2.9E-26 6.4E-31 196.3 21.5 206 17-279 1-208 (264)
35 cd01172 RfaE_like RfaE encodes 99.9 4.3E-26 9.4E-31 199.1 22.8 224 17-277 1-238 (304)
36 PRK09513 fruK 1-phosphofructok 99.9 5.9E-26 1.3E-30 199.1 23.4 222 16-278 3-236 (312)
37 KOG2855 Ribokinase [Carbohydra 99.9 3E-26 6.6E-31 194.9 19.0 231 14-278 8-249 (330)
38 cd01943 MAK32 MAK32 kinase. M 99.9 1.9E-26 4.2E-31 203.2 16.8 218 17-276 1-242 (328)
39 cd01164 FruK_PfkB_like 1-phosp 99.9 2.2E-25 4.7E-30 193.5 21.3 217 19-278 4-233 (289)
40 TIGR02198 rfaE_dom_I rfaE bifu 99.9 6.5E-25 1.4E-29 192.7 23.9 225 14-276 6-244 (315)
41 TIGR03168 1-PFK hexose kinase, 99.9 4E-25 8.7E-30 193.0 22.4 215 23-278 6-232 (303)
42 PRK09813 fructoselysine 6-kina 99.9 1.1E-24 2.5E-29 186.2 19.3 202 16-278 1-204 (260)
43 PRK11316 bifunctional heptose 99.9 5.5E-24 1.2E-28 196.7 21.0 228 14-278 9-244 (473)
44 cd01937 ribokinase_group_D Rib 99.9 1.3E-22 2.8E-27 172.8 20.8 202 17-279 1-204 (254)
45 cd01946 ribokinase_group_C Rib 99.9 3E-22 6.6E-27 172.7 20.1 192 74-279 20-215 (277)
46 PLN02630 pfkB-type carbohydrat 99.9 9.6E-22 2.1E-26 173.0 19.7 206 10-279 6-223 (335)
47 COG2870 RfaE ADP-heptose synth 99.9 1.3E-21 2.9E-26 168.3 19.2 227 15-278 10-244 (467)
48 cd00287 ribokinase_pfkB_like r 99.8 2.4E-19 5.2E-24 146.5 18.6 162 17-278 1-166 (196)
49 KOG2947 Carbohydrate kinase [C 99.7 1.1E-15 2.4E-20 123.4 19.3 221 15-277 4-239 (308)
50 KOG3009 Predicted carbohydrate 99.1 2.5E-09 5.3E-14 94.3 13.7 193 9-277 334-540 (614)
51 cd01173 pyridoxal_pyridoxamine 98.5 5.9E-07 1.3E-11 76.4 9.4 109 169-278 71-198 (254)
52 PRK08176 pdxK pyridoxal-pyrido 98.5 2.4E-06 5.3E-11 73.8 12.0 108 168-278 86-215 (281)
53 TIGR00196 yjeF_cterm yjeF C-te 98.3 5.2E-06 1.1E-10 71.5 10.8 106 166-277 88-195 (272)
54 PRK12412 pyridoxal kinase; Rev 98.3 8.2E-06 1.8E-10 70.1 11.9 98 171-271 73-181 (268)
55 cd01169 HMPP_kinase 4-amino-5- 98.3 7.7E-06 1.7E-10 69.0 11.6 105 170-277 68-188 (242)
56 PRK07105 pyridoxamine kinase; 98.3 5.1E-06 1.1E-10 71.9 10.1 104 170-276 75-200 (284)
57 PRK06427 bifunctional hydroxy- 98.3 1.3E-05 2.8E-10 68.7 11.7 105 170-277 73-195 (266)
58 TIGR00687 pyridox_kin pyridoxa 98.2 5E-06 1.1E-10 72.1 8.8 103 167-271 71-188 (286)
59 TIGR00097 HMP-P_kinase phospho 98.2 2.1E-05 4.6E-10 66.9 11.5 105 170-277 67-187 (254)
60 PRK12413 phosphomethylpyrimidi 98.2 1.4E-05 3.1E-10 67.9 10.3 162 97-270 4-177 (253)
61 PRK05756 pyridoxamine kinase; 98.2 1.3E-05 2.8E-10 69.5 9.7 109 168-278 72-202 (286)
62 PRK12616 pyridoxal kinase; Rev 98.1 2E-05 4.3E-10 67.7 10.3 98 170-270 74-183 (270)
63 cd01171 YXKO-related B.subtili 98.0 3.9E-05 8.5E-10 65.3 10.1 106 167-277 74-182 (254)
64 cd01170 THZ_kinase 4-methyl-5- 98.0 6.9E-05 1.5E-09 63.3 10.0 110 165-277 44-169 (242)
65 PRK08573 phosphomethylpyrimidi 97.8 0.00012 2.6E-09 67.4 9.5 94 172-268 73-177 (448)
66 PF08543 Phos_pyr_kin: Phospho 97.7 0.00016 3.4E-09 61.3 8.4 96 170-268 60-165 (246)
67 PTZ00344 pyridoxal kinase; Pro 97.7 0.00057 1.2E-08 59.6 10.9 98 170-270 77-190 (296)
68 COG0351 ThiD Hydroxymethylpyri 97.5 0.00055 1.2E-08 57.7 7.9 97 171-270 73-181 (263)
69 PLN02898 HMP-P kinase/thiamin- 97.4 0.0014 3E-08 61.4 10.8 98 170-270 78-187 (502)
70 PLN02978 pyridoxal kinase 97.4 0.0014 2.9E-08 57.5 10.0 96 171-268 87-195 (308)
71 PRK14039 ADP-dependent glucoki 97.4 0.028 6.1E-07 51.3 18.3 162 73-242 85-295 (453)
72 PTZ00347 phosphomethylpyrimidi 97.3 0.0027 5.8E-08 59.6 11.4 99 167-270 294-409 (504)
73 TIGR00694 thiM hydroxyethylthi 97.3 0.0017 3.6E-08 55.2 8.8 109 166-277 45-168 (249)
74 PRK09355 hydroxyethylthiazole 97.2 0.003 6.5E-08 54.1 9.8 100 166-266 50-164 (263)
75 PRK09517 multifunctional thiam 97.1 0.0031 6.8E-08 61.9 9.5 103 171-276 311-430 (755)
76 PF02110 HK: Hydroxyethylthiaz 97.0 0.0055 1.2E-07 51.5 9.1 77 166-243 45-125 (246)
77 COG2240 PdxK Pyridoxal/pyridox 96.9 0.0039 8.4E-08 53.0 7.6 102 166-269 69-183 (281)
78 PRK14713 multifunctional hydro 96.8 0.0089 1.9E-07 56.4 10.0 97 170-269 98-205 (530)
79 COG2145 ThiM Hydroxyethylthiaz 96.7 0.019 4E-07 48.2 9.5 77 166-243 51-131 (265)
80 PRK03979 ADP-specific phosphof 96.5 0.25 5.4E-06 45.4 16.3 210 15-241 12-306 (463)
81 KOG2599 Pyridoxal/pyridoxine/p 96.4 0.012 2.5E-07 49.5 6.6 98 168-270 79-192 (308)
82 cd01938 ADPGK_ADPPFK ADP-depen 95.9 0.11 2.5E-06 47.6 11.3 161 73-241 100-286 (445)
83 PTZ00493 phosphomethylpyrimidi 95.9 0.038 8.3E-07 48.5 7.8 95 171-268 74-190 (321)
84 PF04587 ADP_PFK_GK: ADP-speci 95.2 0.037 8.1E-07 50.9 5.6 158 75-241 91-292 (444)
85 PRK14038 ADP-dependent glucoki 95.2 1.6 3.5E-05 40.1 15.7 161 73-241 104-300 (453)
86 TIGR02045 P_fruct_ADP ADP-spec 94.6 1.8 4E-05 39.7 14.5 156 76-240 86-291 (446)
87 KOG3974 Predicted sugar kinase 93.6 0.58 1.3E-05 39.4 8.5 106 165-273 96-207 (306)
88 PF01256 Carb_kinase: Carbohyd 91.3 0.87 1.9E-05 38.4 7.0 84 166-255 63-148 (242)
89 PRK10565 putative carbohydrate 91.0 2.1 4.5E-05 40.4 9.8 69 168-243 318-386 (508)
90 PRK10076 pyruvate formate lyas 90.0 4.1 8.8E-05 33.7 9.8 69 170-242 38-111 (213)
91 KOG2598 Phosphomethylpyrimidin 87.6 3.1 6.8E-05 37.7 7.8 98 170-270 92-206 (523)
92 COG0063 Predicted sugar kinase 82.6 14 0.00029 32.1 9.3 71 167-242 98-169 (284)
93 COG1618 Predicted nucleotide k 81.7 14 0.0003 29.2 8.1 108 97-205 8-138 (179)
94 COG1180 PflA Pyruvate-formate 79.0 24 0.00053 30.1 9.7 81 170-257 83-170 (260)
95 PF01118 Semialdhyde_dh: Semia 78.6 4.7 0.0001 29.8 4.7 94 100-207 2-99 (121)
96 PRK00278 trpC indole-3-glycero 76.9 35 0.00077 29.0 10.1 64 163-234 126-189 (260)
97 PF10087 DUF2325: Uncharacteri 76.5 7.3 0.00016 27.6 5.0 78 102-204 4-82 (97)
98 PRK06702 O-acetylhomoserine am 72.5 52 0.0011 30.4 10.7 115 53-205 63-185 (432)
99 PRK06444 prephenate dehydrogen 71.9 22 0.00048 28.9 7.3 25 97-123 3-27 (197)
100 PRK05967 cystathionine beta-ly 68.6 85 0.0019 28.6 11.1 36 170-205 149-187 (395)
101 PRK08114 cystathionine beta-ly 67.8 54 0.0012 29.9 9.6 69 52-126 63-132 (395)
102 PRK08133 O-succinylhomoserine 63.8 86 0.0019 28.4 10.2 20 186-205 165-184 (390)
103 PRK06728 aspartate-semialdehyd 63.5 66 0.0014 28.8 9.1 94 94-207 5-101 (347)
104 KOG4184 Predicted sugar kinase 63.4 18 0.0004 32.1 5.4 157 73-241 137-317 (478)
105 PRK05671 aspartate-semialdehyd 62.3 76 0.0016 28.2 9.3 95 95-207 5-99 (336)
106 PRK07050 cystathionine beta-ly 61.5 1.3E+02 0.0028 27.3 10.9 36 170-205 150-188 (394)
107 PRK05968 hypothetical protein; 61.0 1.3E+02 0.0028 27.2 11.5 37 169-205 146-185 (389)
108 TIGR00334 5S_RNA_mat_M5 ribonu 61.0 36 0.00079 27.1 6.2 63 171-237 23-85 (174)
109 PRK08247 cystathionine gamma-s 60.5 1.3E+02 0.0027 27.0 11.4 36 170-205 136-174 (366)
110 PLN02383 aspartate semialdehyd 59.8 59 0.0013 29.0 8.2 95 93-207 6-102 (344)
111 PRK06598 aspartate-semialdehyd 59.3 72 0.0016 28.8 8.6 95 96-207 3-100 (369)
112 PRK09028 cystathionine beta-ly 59.0 72 0.0016 29.0 8.8 38 169-206 145-185 (394)
113 PRK13957 indole-3-glycerol-pho 53.0 59 0.0013 27.6 6.6 72 160-239 114-185 (247)
114 PRK08040 putative semialdehyde 52.9 1.3E+02 0.0029 26.7 9.2 94 94-208 4-100 (336)
115 TIGR02494 PFLE_PFLC glycyl-rad 52.5 1.5E+02 0.0033 25.4 9.5 65 172-242 127-198 (295)
116 PRK07810 O-succinylhomoserine 52.4 1.7E+02 0.0037 26.6 10.2 36 170-205 155-193 (403)
117 PRK14874 aspartate-semialdehyd 51.8 1.3E+02 0.0029 26.5 9.2 92 95-207 2-96 (334)
118 PF00919 UPF0004: Uncharacteri 51.7 82 0.0018 22.4 6.4 58 168-230 34-97 (98)
119 COG0136 Asd Aspartate-semialde 51.7 1.5E+02 0.0033 26.3 9.2 96 95-207 2-99 (334)
120 PF00070 Pyr_redox: Pyridine n 51.5 37 0.0008 22.7 4.5 43 81-124 10-58 (80)
121 PRK08134 O-acetylhomoserine am 50.3 1.7E+02 0.0038 26.9 9.9 38 169-206 148-188 (433)
122 TIGR02826 RNR_activ_nrdG3 anae 49.7 90 0.0019 24.0 6.8 58 171-236 62-120 (147)
123 cd00614 CGS_like CGS_like: Cys 49.4 1.8E+02 0.0039 25.9 9.8 20 186-205 144-163 (369)
124 KOG0257 Kynurenine aminotransf 49.3 43 0.00093 30.5 5.5 50 156-205 158-213 (420)
125 COG0169 AroE Shikimate 5-dehyd 49.1 1.4E+02 0.0031 25.8 8.5 46 74-121 130-175 (283)
126 PRK06901 aspartate-semialdehyd 48.9 1.9E+02 0.0041 25.6 9.8 92 97-207 6-97 (322)
127 TIGR01745 asd_gamma aspartate- 48.1 2.1E+02 0.0046 25.8 10.1 94 96-207 2-99 (366)
128 PF00218 IGPS: Indole-3-glycer 47.9 41 0.00088 28.6 5.0 73 159-239 120-192 (254)
129 TIGR01328 met_gam_lyase methio 47.4 2E+02 0.0043 26.0 9.7 37 170-206 144-183 (391)
130 TIGR01325 O_suc_HS_sulf O-succ 47.3 2.1E+02 0.0046 25.6 10.1 20 186-205 158-177 (380)
131 PRK08248 O-acetylhomoserine am 46.8 2.2E+02 0.0048 26.2 10.0 36 170-205 149-187 (431)
132 PRK03659 glutathione-regulated 46.6 1.4E+02 0.003 28.9 9.0 121 99-238 402-524 (601)
133 cd03112 CobW_like The function 45.5 71 0.0015 24.7 5.8 8 170-177 86-93 (158)
134 TIGR01324 cysta_beta_ly_B cyst 44.9 2.4E+02 0.0051 25.5 11.2 36 170-205 135-173 (377)
135 PRK07582 cystathionine gamma-l 44.7 1.7E+02 0.0036 26.2 8.7 55 73-128 67-122 (366)
136 PRK08249 cystathionine gamma-s 43.3 2E+02 0.0043 26.1 9.1 36 170-205 149-187 (398)
137 PF03129 HGTP_anticodon: Antic 41.9 1.1E+02 0.0024 20.9 6.3 51 183-237 15-65 (94)
138 COG1712 Predicted dinucleotide 41.9 62 0.0014 27.1 4.9 105 99-205 2-120 (255)
139 cd00858 GlyRS_anticodon GlyRS 41.6 1E+02 0.0022 22.5 5.9 66 167-237 23-90 (121)
140 PRK11863 N-acetyl-gamma-glutam 41.5 2.1E+02 0.0045 25.2 8.5 81 95-207 3-83 (313)
141 TIGR01296 asd_B aspartate-semi 41.5 2.1E+02 0.0045 25.4 8.7 91 97-207 2-94 (339)
142 TIGR01329 cysta_beta_ly_E cyst 41.4 2.7E+02 0.0057 25.1 9.9 36 170-205 131-169 (378)
143 COG0269 SgbH 3-hexulose-6-phos 41.4 2E+02 0.0044 23.8 10.0 39 168-207 78-116 (217)
144 PF10649 DUF2478: Protein of u 41.0 1.8E+02 0.0038 22.9 8.3 97 110-206 17-132 (159)
145 PRK05613 O-acetylhomoserine am 40.2 3E+02 0.0066 25.4 10.0 20 186-205 174-193 (437)
146 PRK08818 prephenate dehydrogen 40.0 2.3E+02 0.005 25.6 8.8 78 100-208 7-91 (370)
147 COG2518 Pcm Protein-L-isoaspar 39.1 1.8E+02 0.0038 24.0 7.2 46 73-122 75-120 (209)
148 PRK15447 putative protease; Pr 38.9 1.4E+02 0.003 26.1 7.0 70 169-239 27-103 (301)
149 PF13460 NAD_binding_10: NADH( 38.4 1.2E+02 0.0027 23.4 6.3 91 105-207 7-99 (183)
150 TIGR03128 RuMP_HxlA 3-hexulose 38.4 1.5E+02 0.0032 23.9 6.8 60 168-232 74-133 (206)
151 COG0373 HemA Glutamyl-tRNA red 37.5 66 0.0014 29.5 4.9 131 85-241 164-302 (414)
152 cd00562 NifX_NifB This CD repr 37.4 71 0.0015 22.2 4.3 40 79-124 47-86 (102)
153 PF09673 TrbC_Ftype: Type-F co 37.3 68 0.0015 23.5 4.2 30 174-204 2-31 (113)
154 PRK13397 3-deoxy-7-phosphohept 36.7 1.4E+02 0.0031 25.3 6.5 79 183-270 65-162 (250)
155 PF00265 TK: Thymidine kinase; 36.6 2.2E+02 0.0047 22.6 9.4 100 98-202 5-108 (176)
156 PRK07504 O-succinylhomoserine 36.6 3.1E+02 0.0066 24.9 9.2 37 169-205 149-188 (398)
157 TIGR02742 TrbC_Ftype type-F co 36.2 87 0.0019 23.7 4.7 30 174-204 3-32 (130)
158 PF04127 DFP: DNA / pantothena 36.1 64 0.0014 25.9 4.2 24 78-102 28-51 (185)
159 PRK13018 cell division protein 35.1 1.8E+02 0.0038 26.5 7.2 33 74-107 32-64 (378)
160 PRK11537 putative GTP-binding 34.9 2.3E+02 0.005 24.9 7.8 65 170-236 90-162 (318)
161 PF02254 TrkA_N: TrkA-N domain 34.8 1.7E+02 0.0036 20.8 6.4 95 102-207 3-99 (116)
162 PRK05939 hypothetical protein; 34.1 3.6E+02 0.0078 24.5 11.1 36 170-205 131-169 (397)
163 PLN02242 methionine gamma-lyas 33.9 3.3E+02 0.0072 24.9 9.0 35 171-205 164-201 (418)
164 COG1058 CinA Predicted nucleot 33.4 1.3E+02 0.0028 25.6 5.7 49 80-131 21-69 (255)
165 TIGR01326 OAH_OAS_sulfhy OAH/O 32.8 3.9E+02 0.0083 24.4 10.1 20 186-205 161-180 (418)
166 PLN00203 glutamyl-tRNA reducta 32.2 77 0.0017 30.1 4.6 38 84-121 249-290 (519)
167 PRK07811 cystathionine gamma-s 31.9 3.6E+02 0.0078 24.3 8.9 37 169-205 145-184 (388)
168 PRK13802 bifunctional indole-3 31.6 1.1E+02 0.0023 30.3 5.6 71 161-239 124-194 (695)
169 TIGR00978 asd_EA aspartate-sem 31.4 3E+02 0.0064 24.4 8.1 37 167-207 70-106 (341)
170 COG0075 Serine-pyruvate aminot 31.2 4.1E+02 0.0089 24.2 10.8 83 97-205 82-169 (383)
171 COG1646 Predicted phosphate-bi 30.9 80 0.0017 26.4 4.0 41 168-208 39-81 (240)
172 PRK04169 geranylgeranylglycery 30.7 1.2E+02 0.0027 25.4 5.2 41 168-208 30-71 (232)
173 PF02492 cobW: CobW/HypB/UreG, 30.6 83 0.0018 24.8 4.1 66 170-237 84-154 (178)
174 smart00642 Aamy Alpha-amylase 30.0 71 0.0015 25.1 3.5 25 182-206 68-92 (166)
175 cd04915 ACT_AK-Ectoine_2 ACT d 29.6 1.6E+02 0.0034 18.9 5.1 45 97-141 2-50 (66)
176 COG0240 GpsA Glycerol-3-phosph 29.6 1.5E+02 0.0032 26.3 5.7 24 100-123 4-27 (329)
177 cd07242 Glo_EDI_BRP_like_6 Thi 29.3 1.5E+02 0.0033 21.2 5.1 42 109-150 82-126 (128)
178 COG2099 CobK Precorrin-6x redu 28.9 2E+02 0.0043 24.5 6.0 28 247-274 116-143 (257)
179 PRK13307 bifunctional formalde 28.8 2.2E+02 0.0047 26.0 6.8 37 169-206 249-285 (391)
180 PRK05994 O-acetylhomoserine am 28.7 4.6E+02 0.01 24.0 10.0 37 170-206 148-187 (427)
181 PRK09427 bifunctional indole-3 28.6 84 0.0018 29.3 4.2 70 162-239 124-193 (454)
182 cd08345 Fosfomycin_RP Fosfomyc 28.4 1.6E+02 0.0036 20.4 5.1 42 108-149 67-108 (113)
183 PRK13730 conjugal transfer pil 27.6 1.3E+02 0.0027 24.8 4.5 31 173-204 92-123 (212)
184 cd04924 ACT_AK-Arch_2 ACT doma 27.6 1.1E+02 0.0024 19.0 3.6 44 98-141 2-50 (66)
185 PRK07324 transaminase; Validat 27.5 4.4E+02 0.0096 23.4 9.9 36 169-204 152-193 (373)
186 PF02579 Nitro_FeMo-Co: Dinitr 27.5 43 0.00094 23.0 1.7 42 77-124 37-78 (94)
187 TIGR01125 MiaB-like tRNA modif 27.5 2.1E+02 0.0046 26.2 6.7 59 169-232 35-96 (430)
188 TIGR01851 argC_other N-acetyl- 27.4 3.5E+02 0.0075 23.8 7.6 38 166-207 45-82 (310)
189 COG0436 Aspartate/tyrosine/aro 27.3 96 0.0021 28.2 4.3 46 160-205 153-204 (393)
190 PRK08574 cystathionine gamma-s 27.2 4.7E+02 0.01 23.6 10.0 36 170-205 137-175 (385)
191 cd07266 HPCD_N_class_II N-term 27.1 1.6E+02 0.0035 20.8 4.9 44 107-150 72-116 (121)
192 PRK06234 methionine gamma-lyas 26.8 4.8E+02 0.01 23.6 9.8 18 73-90 81-98 (400)
193 PRK10669 putative cation:proto 26.7 2.8E+02 0.0061 26.4 7.6 118 100-236 420-539 (558)
194 cd04726 KGPDC_HPS 3-Keto-L-gul 26.6 3.2E+02 0.0069 21.7 7.0 57 169-232 76-133 (202)
195 PLN02968 Probable N-acetyl-gam 26.6 3.1E+02 0.0068 24.8 7.4 100 93-208 37-137 (381)
196 PF15632 ATPgrasp_Ter: ATP-gra 26.5 4.6E+02 0.0099 23.3 9.5 18 259-276 145-166 (329)
197 PRK03562 glutathione-regulated 26.3 4.1E+02 0.0089 25.9 8.6 120 99-237 402-523 (621)
198 PF00128 Alpha-amylase: Alpha 26.1 88 0.0019 26.5 3.8 24 182-205 50-73 (316)
199 PF02593 dTMP_synthase: Thymid 25.8 1.9E+02 0.004 24.1 5.3 38 168-207 49-86 (217)
200 PRK04296 thymidine kinase; Pro 25.6 2.2E+02 0.0048 22.7 5.8 35 170-204 78-113 (190)
201 PRK04148 hypothetical protein; 25.5 1.5E+02 0.0032 22.6 4.3 37 166-204 73-109 (134)
202 PF12681 Glyoxalase_2: Glyoxal 25.5 2E+02 0.0044 19.6 5.1 39 109-147 67-105 (108)
203 cd08364 FosX FosX, a fosfomyci 25.2 2E+02 0.0043 21.0 5.2 43 108-150 78-120 (131)
204 cd07265 2_3_CTD_N N-terminal d 25.0 2E+02 0.0043 20.4 5.0 41 109-149 75-116 (122)
205 cd00331 IGPS Indole-3-glycerol 24.4 3.9E+02 0.0084 21.7 11.0 58 167-232 91-148 (217)
206 cd00861 ProRS_anticodon_short 24.2 2.1E+02 0.0046 19.3 4.8 50 184-237 18-67 (94)
207 cd02068 radical_SAM_B12_BD B12 24.2 2.5E+02 0.0055 20.5 5.5 64 169-236 38-101 (127)
208 PRK11145 pflA pyruvate formate 23.9 4.2E+02 0.0091 21.9 8.4 57 172-232 72-130 (246)
209 cd07241 Glo_EDI_BRP_like_3 Thi 23.6 2E+02 0.0044 20.2 4.9 46 102-147 77-122 (125)
210 PF03102 NeuB: NeuB family; I 23.6 4.1E+02 0.0089 22.4 7.1 47 181-235 53-99 (241)
211 cd04918 ACT_AK1-AT_2 ACT domai 23.5 2E+02 0.0044 18.2 4.6 33 109-141 17-49 (65)
212 PRK10537 voltage-gated potassi 23.5 5.7E+02 0.012 23.3 9.2 118 98-236 241-360 (393)
213 TIGR00089 RNA modification enz 23.3 2.5E+02 0.0054 25.8 6.3 63 168-235 34-102 (429)
214 PRK06767 methionine gamma-lyas 23.3 5.5E+02 0.012 23.1 9.1 36 170-205 146-184 (386)
215 PLN02520 bifunctional 3-dehydr 23.3 2.8E+02 0.006 26.4 6.7 90 170-272 110-206 (529)
216 PF03841 SelA: L-seryl-tRNA se 23.3 1E+02 0.0022 27.7 3.6 50 184-234 157-212 (367)
217 TIGR03569 NeuB_NnaB N-acetylne 23.3 3.5E+02 0.0076 24.0 6.9 48 181-236 73-120 (329)
218 COG1889 NOP1 Fibrillarin-like 23.1 2.6E+02 0.0057 23.1 5.5 69 151-232 82-152 (231)
219 PRK00436 argC N-acetyl-gamma-g 23.0 5.1E+02 0.011 23.0 8.0 38 167-208 65-102 (343)
220 PRK00125 pyrF orotidine 5'-pho 22.9 3.8E+02 0.0082 23.2 6.9 47 184-232 73-122 (278)
221 PRK14106 murD UDP-N-acetylmura 22.6 3E+02 0.0064 25.2 6.7 45 76-122 11-55 (450)
222 cd07251 Glo_EDI_BRP_like_10 Th 22.6 2.3E+02 0.0051 19.7 5.0 42 108-150 77-119 (121)
223 COG0489 Mrp ATPases involved i 22.4 2E+02 0.0044 24.5 5.2 33 82-118 75-107 (265)
224 PF03853 YjeF_N: YjeF-related 22.3 1.4E+02 0.0031 23.4 3.9 20 185-204 119-139 (169)
225 PRK08861 cystathionine gamma-s 22.3 5.9E+02 0.013 23.0 9.5 38 169-206 137-177 (388)
226 PF10678 DUF2492: Protein of u 22.3 1.9E+02 0.0041 19.7 3.9 36 83-120 25-60 (78)
227 cd07238 Glo_EDI_BRP_like_5 Thi 22.3 2.5E+02 0.0054 19.5 5.0 40 110-149 69-108 (112)
228 cd00851 MTH1175 This uncharact 22.2 1.6E+02 0.0034 20.5 3.9 39 80-124 50-88 (103)
229 cd08363 FosB FosB, a fosfomyci 22.2 2.5E+02 0.0054 20.5 5.2 44 108-151 71-114 (131)
230 PF13986 DUF4224: Domain of un 21.9 1.8E+02 0.0039 17.6 3.4 25 230-257 2-26 (47)
231 cd04922 ACT_AKi-HSDH-ThrA_2 AC 21.2 1.9E+02 0.0041 17.9 3.8 34 108-141 17-50 (66)
232 PRK15394 4-deoxy-4-formamido-L 21.2 1.5E+02 0.0032 25.9 4.1 36 80-117 19-54 (296)
233 cd04868 ACT_AK-like ACT domain 21.0 1.9E+02 0.0041 16.9 5.1 33 108-140 16-48 (60)
234 PRK07121 hypothetical protein; 21.0 1.3E+02 0.0028 28.2 4.0 23 78-101 28-50 (492)
235 PRK09276 LL-diaminopimelate am 20.6 1.6E+02 0.0035 26.3 4.4 37 169-205 165-207 (385)
236 COG1249 Lpd Pyruvate/2-oxoglut 20.6 2.4E+02 0.0052 26.3 5.6 52 72-124 173-232 (454)
237 PRK05957 aspartate aminotransf 20.6 2.8E+02 0.006 24.9 6.0 36 170-205 160-201 (389)
238 COG2248 Predicted hydrolase (m 20.5 5.3E+02 0.012 22.2 6.9 90 132-222 163-263 (304)
239 PF04131 NanE: Putative N-acet 20.5 4.7E+02 0.01 21.2 8.9 41 167-207 61-102 (192)
240 COG0520 csdA Selenocysteine ly 20.4 2.6E+02 0.0056 25.6 5.7 38 169-206 161-201 (405)
241 PRK11199 tyrA bifunctional cho 20.3 4.8E+02 0.01 23.5 7.4 75 100-207 101-177 (374)
242 TIGR01579 MiaB-like-C MiaB-lik 20.3 3.3E+02 0.0071 24.8 6.4 62 169-236 32-98 (414)
243 cd07240 ED_TypeI_classII_N N-t 20.3 2.7E+02 0.0058 19.3 4.9 43 108-150 70-112 (117)
244 PRK03673 hypothetical protein; 20.3 3.3E+02 0.0071 24.9 6.3 48 81-131 22-69 (396)
245 PRK06545 prephenate dehydrogen 20.1 3.9E+02 0.0085 23.8 6.7 92 100-207 3-97 (359)
No 1
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=4.1e-40 Score=293.51 Aligned_cols=266 Identities=79% Similarity=1.267 Sum_probs=230.4
Q ss_pred CCCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCC---CCCCCceeecCchHHHHHHHH
Q 023557 13 SQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHIL---DEPSPIKTIAGGSVTNTIRGL 89 (280)
Q Consensus 13 ~~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~GG~~~N~a~~l 89 (280)
.++++|++||||++||+.++++++||+++.+++|.+++++.++...++.++..+.. +...+....+||+++|+++++
T Consensus 17 ~~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~l 96 (367)
T PLN02379 17 PRPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRGL 96 (367)
T ss_pred CCCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999875432 112246788999999999999
Q ss_pred HhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccC
Q 023557 90 SVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVK 169 (280)
Q Consensus 90 a~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~ 169 (280)
+++||.++.++|.+|+|.+|+++++.|++.||++.++...+++|++|+++++++|+|++..+.+....++++++..+.++
T Consensus 97 a~~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~~~Tg~~~v~v~~dgert~~~~lg~~~~l~~~~~~~~~~~ 176 (367)
T PLN02379 97 SAGFGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAKKGPTAQCVCLVDALGNRTMRPCLSSAVKLQADELTKEDFK 176 (367)
T ss_pred HHhcCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCcccCCCCCceEEEEECCCCCccccCCccccccCChhHCCHHHHh
Confidence 82399999999999999999999999999999988886655689999999999999999877777777777788777889
Q ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHH
Q 023557 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSE 249 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~ 249 (280)
+++++|+++...+++.+.++++.+++.|+++++|+++..++.++++.+++++...++|++++|++|++.+++....++.+
T Consensus 177 ~~~~v~v~~~~~~~~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~~~~~~~~~~ 256 (367)
T PLN02379 177 GSKWLVLRYGFYNLEVIEAAIRLAKQEGLSVSLDLASFEMVRNFRSPLLQLLESGKIDLCFANEDEARELLRGEQESDPE 256 (367)
T ss_pred cCCEEEEEcccCCHHHHHHHHHHHHHcCCEEEEeccchhhhhhhhHHHHHHhhcCCccEEEcCHHHHHHHhcCCCCCCHH
Confidence 99999999654578889999999999999999999988777788888998874227999999999999998743335677
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEeCCc
Q 023557 250 AALEFLAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 250 ~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++.+.+.++++.++||+|++|++++++++
T Consensus 257 ~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~ 285 (367)
T PLN02379 257 AALEFLAKYCNWAVVTLGSKGCIARHGKE 285 (367)
T ss_pred HHHHHHHhcCCEEEEEECCCCeEEEECCE
Confidence 77788888899999999999999998765
No 2
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=2.4e-39 Score=291.56 Aligned_cols=257 Identities=25% Similarity=0.334 Sum_probs=217.9
Q ss_pred eeecc-CCCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHH
Q 023557 8 INREA-SQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTI 86 (280)
Q Consensus 8 ~~~~~-~~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a 86 (280)
|+++- +++.+|+++| |++||+.+.++++||+++.+++|.+++++.++...++.++...+. .....+||+++|+|
T Consensus 25 ~~~~~~~~~~~v~g~G-NaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~~~~~----~~~~~~GGsaaNtA 99 (434)
T PRK15074 25 IQPENETSRTYIVGID-QTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELKQNNL----ITHEFAGGTIGNTL 99 (434)
T ss_pred cccccCCCCCcEEEeC-CceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHhhccc----cccccCCCHHHHHH
Confidence 55554 3478999999 999999999999999999999999999999999999999864320 13566999999999
Q ss_pred HHHHhhcC-CcEEEEEeecCC-hhHHHHHHHHH--hCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCccc
Q 023557 87 RGLSVGFG-VPCGLIGAYGDD-QQGQLFVSNMQ--FSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADE 162 (280)
Q Consensus 87 ~~la~~lG-~~~~~~~~vG~D-~~g~~i~~~L~--~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~ 162 (280)
+++++ || .++.|+|.||+| .+|+++++.|+ +.||++.++...+++|++|+++++++|+|+++.+.++...+++++
T Consensus 100 ~~lAr-LGG~~~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~~~TG~~~VlV~~dGeRt~~t~~GA~~~Lt~ed 178 (434)
T PRK15074 100 HNYSV-LADDRSVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLISEDGERTFAISPGHMNQLRPES 178 (434)
T ss_pred HHHHH-cCCCCeEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcCCCCEEEEEEECCCCCEEEEEecChhhcCChhH
Confidence 99997 96 999999999999 79999999997 589999988766558999999999999999999999988899998
Q ss_pred CcccccCCCcEEEEE-ecCC------CHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHh-hccCCCceEEEcCHH
Q 023557 163 LIAEDVKGSKWLVLR-FGMF------NFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQ-LLESGDVDLCFANED 234 (280)
Q Consensus 163 l~~~~~~~~~~v~i~-~~~~------~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~-~l~~~~~dil~~N~~ 234 (280)
++.+.+++++++|++ +.+. .++...++++.|++.|+++++|++....+..+++.+.+ +++ ++|++++|++
T Consensus 179 ld~~~i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~~~~~~e~l~~--~vDILf~Nee 256 (434)
T PRK15074 179 IPEDVIAGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDNPQWWQEFLKE--HVSILAMNED 256 (434)
T ss_pred CCHhHhccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccccHHHHHHHHHh--cCCEEEcCHH
Confidence 888889999999998 4322 25778899999999999999999987544333333333 334 8999999999
Q ss_pred HHHHHhcCCCCCcHHHHHHHHhcCCCEEEEEcCCCceEEEe
Q 023557 235 EAAELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKH 275 (280)
Q Consensus 235 E~~~l~~~~~~~~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~ 275 (280)
|+..+++. .+++++++.+..+++.||||+|++|++++.
T Consensus 257 Ea~~LtG~---~d~eea~~~L~~~~~~VVVTlG~~Ga~v~~ 294 (434)
T PRK15074 257 EAEALTGE---SDPLLASDKALDWVDLVLCTAGPIGLYMAG 294 (434)
T ss_pred HHHHHhCC---CCHHHHHHHHHcCCCEEEEEECCCCEEEEe
Confidence 99999985 467778877777789999999999999975
No 3
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.6e-36 Score=274.62 Aligned_cols=254 Identities=25% Similarity=0.382 Sum_probs=217.9
Q ss_pred CCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcC
Q 023557 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (280)
Q Consensus 15 ~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG 94 (280)
..+|+++| ++++|+++.++++||+++..+++++++++.++...+++++... +....+||+++|+|+++++ ||
T Consensus 69 ~~~vl~iG-~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~------~~~~~~GG~~~N~Avalar-LG 140 (426)
T PLN02813 69 RWDVLGLG-QAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGC------SYKASAGGSLSNTLVALAR-LG 140 (426)
T ss_pred cceEEEeC-CceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhcc------CceEecCcHHHHHHHHHHH-hc
Confidence 66899999 9999999999999999999999999999999999998887543 5788999999999999997 99
Q ss_pred --------CcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCccc
Q 023557 95 --------VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAE 166 (280)
Q Consensus 95 --------~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~ 166 (280)
.++.++|.+|+|.+|+++++.|++.||++.++...+.+|++++++++++|+|+++.+.+++..++.+++..+
T Consensus 141 ~~~~~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~~~~Tg~~~ilv~~~gertii~~~Ga~~~l~~~~~~~~ 220 (426)
T PLN02813 141 SQSAAGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVKDGTTGTVIVLTTPDAQRTMLSYQGTSSTVNYDSCLAS 220 (426)
T ss_pred cccccCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecCCCCceEEEEEEcCCCCceeeeccCchhhCCccccCHH
Confidence 799999999999999999999999999998877655589999999999999999988888777777666667
Q ss_pred ccCCCcEEEEE-ecC-CC--HHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhc-cCCCceEEEcCHHHHHHHhc
Q 023557 167 DVKGSKWLVLR-FGM-FN--FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLL-ESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 167 ~~~~~~~v~i~-~~~-~~--~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l-~~~~~dil~~N~~E~~~l~~ 241 (280)
.+++++++|++ +.. .+ .+.+.++++.+++.|+++++|+++.....++++.+++.+ + ++|++++|++|+..+++
T Consensus 221 ~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~~~~~~l~~~ll~--~vDil~~Ne~Ea~~l~g 298 (426)
T PLN02813 221 AISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIERHRDDFWDVMGN--YADILFANSDEARALCG 298 (426)
T ss_pred HHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhhhhHHHHHHHHHh--cCCEEEeCHHHHHHHhC
Confidence 78999999998 331 23 367888999999999999999987654445666676655 5 89999999999999988
Q ss_pred CCCCCcHHHHHHHHhcCCCEEEEEcCCCceEEEeCCc
Q 023557 242 GEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 242 ~~~~~~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
....++..++.+.+.++++.+|||+|++|++++++++
T Consensus 299 ~~~~~~~~~a~~~L~~~~~~VVVT~G~~Ga~~~~~~~ 335 (426)
T PLN02813 299 LGSEESPESATRYLSHFCPLVSVTDGARGSYIGVKGE 335 (426)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEEEeCCCCeEEEECCE
Confidence 6433567778888878899999999999999987764
No 4
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=8.5e-34 Score=248.77 Aligned_cols=249 Identities=36% Similarity=0.575 Sum_probs=202.3
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~ 95 (280)
.+|+++| ++++|+++.+++..+......+|++...+.+......... +....+||+++|+|++|++ ||.
T Consensus 2 ~~v~~vG-~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~GG~~~N~A~~la~-LG~ 70 (312)
T cd01168 2 YDVLGLG-NALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAKL---------PVKYIAGGSAANTIRGAAA-LGG 70 (312)
T ss_pred ceEEEEC-CCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHhc---------CccccCCCHHHHHHHHHHH-hcC
Confidence 4799999 9999999999776556555566777776555555443321 3678899999999999997 999
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEE
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 175 (280)
++.++|.+|+|.+|+.+++.|++.||+++++...+.+|+.++++++++|+|+++.+.++...++++++..+.+++++++|
T Consensus 71 ~~~~i~~vG~D~~g~~i~~~l~~~GV~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 150 (312)
T cd01168 71 SAAFIGRVGDDKLGDFLLKDLRAAGVDTRYQVQPDGPTGTCAVLVTPDAERTMCTYLGAANELSPDDLDWSLLAKAKYLY 150 (312)
T ss_pred CeEEEEEeccChhHHHHHHHHHHCCCccccccCCCCCceEEEEEEcCCCceeeecccchhhcCChhHCCHHHHccCCEEE
Confidence 99999999999999999999999999999887654589999999998899999888888888888888777889999999
Q ss_pred EE-ecC-CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHHHHH-
Q 023557 176 LR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAAL- 252 (280)
Q Consensus 176 i~-~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~~~~- 252 (280)
++ +.. .+.+.+..+++.+++.|.++++|++++.....+++.+.++++ ++|++++|++|++.+++... .+..+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~--~~d~l~~n~~E~~~l~~~~~-~~~~~~a~ 227 (312)
T cd01168 151 LEGYLLTVPPEAILLAAEHAKENGVKIALNLSAPFIVQRFKEALLELLP--YVDILFGNEEEAEALAEAET-TDDLEAAL 227 (312)
T ss_pred EEEEecCCCHHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHHh--hCCEEEeCHHHHHHHhCCCC-CChHHHHH
Confidence 99 322 355888999999999999999999765333344555777887 89999999999999988421 2333444
Q ss_pred HHHhcCCCEEEEEcCCCceEEEeCCc
Q 023557 253 EFLAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 253 ~~l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++++.+++.+|||+|++|++++++++
T Consensus 228 ~l~~~g~~~vvvt~G~~G~~~~~~~~ 253 (312)
T cd01168 228 KLLALRCRIVVITQGAKGAVVVEGGE 253 (312)
T ss_pred HHHhcCCCEEEEecCCCCeEEEECCE
Confidence 45567889999999999999987654
No 5
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=3.4e-33 Score=248.14 Aligned_cols=255 Identities=24% Similarity=0.325 Sum_probs=201.3
Q ss_pred CCCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhh
Q 023557 13 SQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (280)
Q Consensus 13 ~~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~ 92 (280)
+..++|+++| ++++|+++.++++||.++...+|++.+.+. .......+.... .+....+||+++|+|+++++
T Consensus 3 ~~~~~i~~iG-~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~-----~~~~~~~GG~~~N~A~~la~- 74 (345)
T PTZ00247 3 SAPKKLLGFG-NPLLDISAHVSDEFLEKYGLELGSAILAEE-KQLPIFEELESI-----PNVSYVPGGSALNTARVAQW- 74 (345)
T ss_pred CCCceEEEEC-CceEEEEEeeCHHHHHHcCCCCCceeechH-HHHHHHHHHHhc-----cCceecCCCHHHHHHHHHHH-
Confidence 4578899999 999999999999999997337888777653 222222222211 35788999999999999996
Q ss_pred cC---C-cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcc---
Q 023557 93 FG---V-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA--- 165 (280)
Q Consensus 93 lG---~-~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~--- 165 (280)
|| . ++.++|.+|+|.+|+.+++.|+++||++.++...+.+|++++++++ +++|+++.+.+++..+++++++.
T Consensus 75 lg~~g~~~v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~~~~~~Tg~~~i~v~-~~~r~~~~~~ga~~~l~~~~i~~~~~ 153 (345)
T PTZ00247 75 MLQAPKGFVCYVGCVGDDRFAEILKEAAEKDGVEMLFEYTTKAPTGTCAVLVC-GKERSLVANLGAANHLSAEHMQSHAV 153 (345)
T ss_pred HhcCCCCcEEEEEEeccchhHHHHHHHHHHcCCeeeccccCCCCcEEEEEEEc-CCCcccccCcchhhcCChHHcCcHHH
Confidence 75 5 8999999999999999999999999999877644448999999987 47999988888888888877764
Q ss_pred -cccCCCcEEEEE-ec-CCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcC
Q 023557 166 -EDVKGSKWLVLR-FG-MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRG 242 (280)
Q Consensus 166 -~~~~~~~~v~i~-~~-~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~ 242 (280)
+.++++++||++ +. ..+.+.+.++++.+++.|+++++|++.+.....+.+.+.++++ ++|++++|++|++.+++.
T Consensus 154 ~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~--~~Dil~~N~~Ea~~l~g~ 231 (345)
T PTZ00247 154 QEAIKTAQLYYLEGFFLTVSPNNVLQVAKHARESGKLFCLNLSAPFISQFFFERLLQVLP--YVDILFGNEEEAKTFAKA 231 (345)
T ss_pred HHHHhhCCEEEEEEEEecccHHHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHHHh--hCCEEEeCHHHHHHHhhc
Confidence 267899999999 32 2467889999999999999999998765322233455777887 899999999999999883
Q ss_pred C--CCCcHHHHHHHHh-------cCCCEEEEEcCCCceEEEeCCc
Q 023557 243 E--ENADSEAALEFLA-------KRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 243 ~--~~~~~~~~~~~l~-------~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
. ..++..++.+.+. .+.+.+|||+|++|++++++++
T Consensus 232 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~ 276 (345)
T PTZ00247 232 MKWDTEDLKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDG 276 (345)
T ss_pred cCCCccCHHHHHHHHHhccccccCCCCEEEEecCCCceEEEECCE
Confidence 1 1235666665543 1467999999999999998765
No 6
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=3.2e-31 Score=231.77 Aligned_cols=225 Identities=23% Similarity=0.334 Sum_probs=182.0
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| ++++|+++.+ +++| .+|..... .+....+||+++|+|++|++ ||.+
T Consensus 4 ~i~~iG-~~~~D~~~~~-----~~~p-~~~~~~~~--------------------~~~~~~~GG~~~Nva~~la~-lG~~ 55 (306)
T PRK11142 4 KLVVLG-SINADHVLNL-----ESFP-RPGETLTG--------------------RHYQVAFGGKGANQAVAAAR-LGAD 55 (306)
T ss_pred cEEEEC-CceeeEEEEe-----CCCC-CCCCeeEe--------------------ccceecCCCcHHHHHHHHHh-cCCc
Confidence 699999 9999999998 7777 34443332 25778899999999999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcccCc--ccccCCCcE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELI--AEDVKGSKW 173 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~--~~~~~~~~~ 173 (280)
+.++|.+|+|.+|+.+++.|++.||+++++...++ +|++++++++++|+|+++.+.++...+++++++ .+.++++++
T Consensus 56 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 135 (306)
T PRK11142 56 IAFIACVGDDSIGESMRQQLAKDGIDTAPVSVIKGESTGVALIFVNDEGENSIGIHAGANAALTPALVEAHRELIANADA 135 (306)
T ss_pred EEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHHHHHhhhccCCE
Confidence 99999999999999999999999999999886655 799999999988999988888877777776665 256889999
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC--CcHHHH
Q 023557 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN--ADSEAA 251 (280)
Q Consensus 174 v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~--~~~~~~ 251 (280)
+|++.. .+.+.+.++++.+++.|.++++|++... ... ..+++ ++|++++|++|+..+++.... .+..++
T Consensus 136 v~~~~~-~~~~~~~~~~~~a~~~g~~v~~d~~~~~---~~~---~~~~~--~~dil~~n~~Ea~~l~g~~~~~~~~~~~~ 206 (306)
T PRK11142 136 LLMQLE-TPLETVLAAAKIAKQHGTKVILNPAPAR---ELP---DELLA--LVDIITPNETEAEKLTGIRVEDDDDAAKA 206 (306)
T ss_pred EEEeCC-CCHHHHHHHHHHHHHcCCEEEEECCCCc---ccC---HHHHh--hCCEEcCCHHHHHHHhCCCCCChHHHHHH
Confidence 999843 2567888999999999999999997431 112 23555 899999999999999885421 234445
Q ss_pred HHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 252 LEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 252 ~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
.+.+ +.+++.+|||+|++|++++++++
T Consensus 207 ~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 234 (306)
T PRK11142 207 AQVLHQKGIETVLITLGSRGVWLSENGE 234 (306)
T ss_pred HHHHHHhCCCeEEEEECCCcEEEEeCCc
Confidence 5555 45899999999999999987654
No 7
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=6.4e-31 Score=228.31 Aligned_cols=225 Identities=31% Similarity=0.431 Sum_probs=181.1
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| .+++|++..+ +++| ..++.... .+....+||++.|+|.+|++ ||.+
T Consensus 1 ~il~iG-~~~~D~~~~~-----~~~~-~~~~~~~~--------------------~~~~~~~GG~~~NvA~~l~~-lG~~ 52 (292)
T cd01174 1 KVVVVG-SINVDLVTRV-----DRLP-KPGETVLG--------------------SSFETGPGGKGANQAVAAAR-LGAR 52 (292)
T ss_pred CEEEEe-eceeEEEEEe-----cCCC-CCCCcEEe--------------------ccceecCCCcHHHHHHHHHH-cCCc
Confidence 589999 9999999998 6666 33333332 25678999999999999996 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCC-CCceeEEEEEcCCCceeeeecCCcCCCCCcccCcc--cccCCCcE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA--EDVKGSKW 173 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~-~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 173 (280)
+.++|.+|+|.+|+.+++.|++.||+++++...+ .+|+.++++++++|+|+++.+.++...+++++++. +.++++++
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T cd01174 53 VAMIGAVGDDAFGDELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVVVPGANGELTPADVDAALELIAAADV 132 (292)
T ss_pred eEEEEEEcCCccHHHHHHHHHHcCCCceEEEEcCCCCceeEEEEEcCCCceEEEEeCCCCCCCCHHHHHHHHHhcccCCE
Confidence 9999999999999999999999999999986654 47999999999889999888877766666655543 56789999
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC--CcHHHH
Q 023557 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN--ADSEAA 251 (280)
Q Consensus 174 v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~--~~~~~~ 251 (280)
+|++.. .+.+.+..+++.+++.|.++++|++... ....++++ .+|++++|++|++.+++.... ++..++
T Consensus 133 v~~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~------~~~~~~~~--~~dil~~n~~E~~~l~~~~~~~~~~~~~~ 203 (292)
T cd01174 133 LLLQLE-IPLETVLAALRAARRAGVTVILNPAPAR------PLPAELLA--LVDILVPNETEAALLTGIEVTDEEDAEKA 203 (292)
T ss_pred EEEeCC-CCHHHHHHHHHHHHhcCCEEEEeCCCcC------cCcHHHHh--hCCEEeeCHHHHHHHhCCCCCCHHHHHHH
Confidence 999854 3677888999999999999999997541 12234555 899999999999999886422 223345
Q ss_pred HHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 252 LEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 252 ~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++.+ +.+++.++||+|++|++++++++
T Consensus 204 ~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 231 (292)
T cd01174 204 ARLLLAKGVKNVIVTLGAKGALLASGGE 231 (292)
T ss_pred HHHHHHcCCCEEEEEeCCCceEEEeCCc
Confidence 5544 56899999999999999988654
No 8
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-31 Score=223.05 Aligned_cols=255 Identities=27% Similarity=0.341 Sum_probs=212.2
Q ss_pred CCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhc
Q 023557 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (280)
Q Consensus 14 ~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~l 93 (280)
++.-.+++| ||++|+...+|++||++|++..|...+++.+.....-+... ..+....+||+.-|+++++++ +
T Consensus 5 ~E~il~G~g-npLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~------~~~~~~~AGGs~qNt~R~aq~-~ 76 (343)
T KOG2854|consen 5 PEGILVGLG-NPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELME------GFNVKYSAGGSAQNTLRIAQW-L 76 (343)
T ss_pred ccceeeccC-ccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhh------cccEEecCCchhHHHHHHHHH-H
Confidence 355577899 99999999999999999999999999988664444333322 237899999999999999997 6
Q ss_pred CC---cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCc----cc
Q 023557 94 GV---PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI----AE 166 (280)
Q Consensus 94 G~---~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~----~~ 166 (280)
+. ++.|+|.+|.|.+|+.+.+.+++.||++++....+.+|++|.+++++++ |+++.+.+++..++.+++. +.
T Consensus 77 ~~~p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGtCavli~~~n-RSL~anLgAAn~f~~dhl~~~~~~~ 155 (343)
T KOG2854|consen 77 LQQPGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGTCAVLITGDN-RSLCANLGAANCFKVDHLDKEENWA 155 (343)
T ss_pred ccCCCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCceEEEEEeCCC-cchhhccchhhccCHHHhcchhhhh
Confidence 65 7999999999999999999999999999988877779999999999665 9999999999999998884 34
Q ss_pred ccCCCcEEEEE-ec-CCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCC
Q 023557 167 DVKGSKWLVLR-FG-MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE 244 (280)
Q Consensus 167 ~~~~~~~v~i~-~~-~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~ 244 (280)
.++++.++|+. +. .+.++.++.+.+.+.+.+++..++++.+.+.+.+.+.+.++++ ++|++|.|++|++.+.....
T Consensus 156 lveka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~--y~DiifgNe~EA~af~~~~~ 233 (343)
T KOG2854|consen 156 LVEKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLP--YADIIFGNEDEAAAFARAHG 233 (343)
T ss_pred hhhheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcC--cceEEEcCHHHHHHHHHhhC
Confidence 78999999999 33 3679999999999999999999999999888888888999998 89999999999999875431
Q ss_pred --CCcHHH-HHH--HH---h-cCCCEEEEEcCCCceEEEeCCcc
Q 023557 245 --NADSEA-ALE--FL---A-KRCQWAVVTLGPNGCIAKHGKEV 279 (280)
Q Consensus 245 --~~~~~~-~~~--~l---~-~~~~~vvvT~G~~Ga~~~~~~~~ 279 (280)
..+..+ +.. .+ . ...++++||.|..++++..++.+
T Consensus 234 ~~t~dv~eia~~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~~v 277 (343)
T KOG2854|consen 234 WETKDVKEIALKLSALPKVNGTRPRTVVITQGPDPVIVAEDGKV 277 (343)
T ss_pred CcccchHHHhhHhhccccccccccceEEEccCCCceEEecCCce
Confidence 223322 222 12 2 35689999999999999887654
No 9
>PTZ00292 ribokinase; Provisional
Probab=99.98 E-value=1.5e-30 Score=229.58 Aligned_cols=236 Identities=21% Similarity=0.275 Sum_probs=186.1
Q ss_pred ccCCCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHH
Q 023557 11 EASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLS 90 (280)
Q Consensus 11 ~~~~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la 90 (280)
-.+++++|+++| .+++|+++.+ +++| .+|..... ......+||++.|+|++|+
T Consensus 11 ~~~~~~~vlviG-~~~vD~~~~~-----~~~~-~~~~~~~~--------------------~~~~~~~GG~~~NvA~~la 63 (326)
T PTZ00292 11 GGEAEPDVVVVG-SSNTDLIGYV-----DRMP-QVGETLHG--------------------TSFHKGFGGKGANQAVMAS 63 (326)
T ss_pred cCCCCCCEEEEc-cceeeEEEec-----CCCC-CCCCceee--------------------cCceeCCCCcHHHHHHHHH
Confidence 345678899999 9999999999 6776 33433332 2567889999999999999
Q ss_pred hhcCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCC-CCceeEEEEEc-CCCceeeeecCCcCCCCCcccCcc--c
Q 023557 91 VGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVD-ASGNRTMRPCLSNAVKIQADELIA--E 166 (280)
Q Consensus 91 ~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~-~~T~~~~~~~~-~~g~r~~~~~~~~~~~~~~~~l~~--~ 166 (280)
+ ||.++.++|.+|+|.+|+.+++.|++.||+++++...+ .+|++++++++ ++|+|+++.+.++...+++++++. +
T Consensus 64 ~-lG~~~~~is~vG~D~~g~~i~~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 142 (326)
T PTZ00292 64 K-LGAKVAMVGMVGTDGFGSDTIKNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVIIPGANNALTPQMVDAQTD 142 (326)
T ss_pred H-cCCCeEEEEEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEeCCccccCCHHHHHHHHH
Confidence 7 99999999999999999999999999999999996654 47999999998 688999888878777777766653 3
Q ss_pred ccCC-CcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCC-
Q 023557 167 DVKG-SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE- 244 (280)
Q Consensus 167 ~~~~-~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~- 244 (280)
.+.. +++++++.. .+.+...++++.+++.|.++++|+++..... ..+.+.++++ ++|++++|++|++.+++...
T Consensus 143 ~i~~~~~~~~~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~-~~~~~~~~l~--~~dii~~n~~E~~~l~g~~~~ 218 (326)
T PTZ00292 143 NIQNICKYLICQNE-IPLETTLDALKEAKERGCYTVFNPAPAPKLA-EVEIIKPFLK--YVSLFCVNEVEAALITGMEVT 218 (326)
T ss_pred HhhhhCCEEEECCC-CCHHHHHHHHHHHHHcCCEEEEECCCCcccc-ccccHHHHHh--cCCEEcCCHHHHHHHhCCCCC
Confidence 4667 899998743 3667788899999999999999997542100 1145667777 89999999999999987532
Q ss_pred -CCcHHHHHHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 245 -NADSEAALEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 245 -~~~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
.++..++.+.+ ..+++.+|||+|++|++++++++
T Consensus 219 ~~~~~~~~~~~l~~~g~~~vvvT~G~~Ga~~~~~~~ 254 (326)
T PTZ00292 219 DTESAFKASKELQQLGVENVIITLGANGCLIVEKEN 254 (326)
T ss_pred ChhHHHHHHHHHHHcCCCeEEEEeCCCcEEEEeCCC
Confidence 12233444544 45889999999999999988653
No 10
>PLN02548 adenosine kinase
Probab=99.98 E-value=6e-30 Score=226.27 Aligned_cols=247 Identities=23% Similarity=0.283 Sum_probs=187.2
Q ss_pred ecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHH---HhhcCCcE
Q 023557 21 LQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGL---SVGFGVPC 97 (280)
Q Consensus 21 iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~l---a~~lG~~~ 97 (280)
+| |+++|+++.+++++|+++.+++|++++........ ..+. ....+....+||+++|+|..+ ++ +|.++
T Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~-----~~~~~~~~~~GG~~~Nva~~a~~l~~-lg~~~ 72 (332)
T PLN02548 1 MG-NPLLDISAVVDQDFLDKYDVKLNNAILAEEKHLPM-YDEL-----ASKYNVEYIAGGATQNSIRVAQWMLQ-IPGAT 72 (332)
T ss_pred CC-CceeEEEEecCHHHHHHcCCCCCceeechHHHHHH-HHHH-----hccCCceecCCcHHHHHHHHHHHHhc-CCCcE
Confidence 58 99999999999999999999999999543222111 1111 112467899999999986544 54 79999
Q ss_pred EEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCc----ccccCCCcE
Q 023557 98 GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI----AEDVKGSKW 173 (280)
Q Consensus 98 ~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~----~~~~~~~~~ 173 (280)
.|+|.+|+|.+|+.+++.|++.||+++++...+.+|++++++++ +|+|+++.+.++...++.+++. .+.++++++
T Consensus 73 ~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~~~~~~T~~~~i~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (332)
T PLN02548 73 SYMGCIGKDKFGEEMKKCATAAGVNVHYYEDESTPTGTCAVLVV-GGERSLVANLSAANCYKVEHLKKPENWALVEKAKF 151 (332)
T ss_pred EEEEEEcCChhHHHHHHHHHHcCCceeeeccCCCCCceEEEEEe-cCCceeeeccchhhcCCHHHhcChhhHhHHhhCCE
Confidence 99999999999999999999999999987654457999999886 7899987776665555554442 235788999
Q ss_pred EEEEe--cCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCC--CCcHH
Q 023557 174 LVLRF--GMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE--NADSE 249 (280)
Q Consensus 174 v~i~~--~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~--~~~~~ 249 (280)
+|++. ...+.+.+..+++.+++.+.++.+|++.+......++.+.++++ .+|++++|++|+..+++... .++..
T Consensus 152 v~~~g~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~l~--~~dil~~n~~E~~~l~g~~~~~~~~~~ 229 (332)
T PLN02548 152 YYIAGFFLTVSPESIMLVAEHAAANNKTFMMNLSAPFICEFFKDQLMEALP--YVDFLFGNETEARTFAKVQGWETEDVE 229 (332)
T ss_pred EEEEEEEccCCHHHHHHHHHHHHHcCCEEEEECCChhHHHHhHHHHHHHHh--hCCEEEecHHHHHHHhCccCCCcccHH
Confidence 99992 22467888888999999999999999754322233456778887 89999999999999987532 13444
Q ss_pred HHHHHHhc-------CCCEEEEEcCCCceEEEeCCc
Q 023557 250 AALEFLAK-------RCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 250 ~~~~~l~~-------~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++.+.+.+ +++.+|||+|++|++++++++
T Consensus 230 ~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~~ 265 (332)
T PLN02548 230 EIALKISALPKASGTHKRTVVITQGADPTVVAEDGK 265 (332)
T ss_pred HHHHHHHHhhhhccccCCEEEEEeCCCcEEEEECCe
Confidence 54433321 478999999999999987664
No 11
>PLN02323 probable fructokinase
Probab=99.97 E-value=3.7e-30 Score=227.42 Aligned_cols=232 Identities=21% Similarity=0.334 Sum_probs=181.9
Q ss_pred cCCCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHh
Q 023557 12 ASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSV 91 (280)
Q Consensus 12 ~~~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~ 91 (280)
-+++.+|+++| +.++|++..+ +.+|... .......+||+++|+|++|++
T Consensus 7 ~~~~~~i~~iG-~~~vD~~~~~-----~~~~~~~-------------------------~~~~~~~~GG~~~NvA~~la~ 55 (330)
T PLN02323 7 TAESSLVVCFG-EMLIDFVPTV-----SGVSLAE-------------------------APAFKKAPGGAPANVAVGISR 55 (330)
T ss_pred cCCCCcEEEec-hhhhhhccCC-----CCCCccc-------------------------ccceeecCCChHHHHHHHHHh
Confidence 34577899999 9999999877 4444110 024678899999999999997
Q ss_pred hcCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecC--CcCCCCCcccCccccc
Q 023557 92 GFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCL--SNAVKIQADELIAEDV 168 (280)
Q Consensus 92 ~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~l~~~~~ 168 (280)
||.++.++|.+|+|.+|+++++.|++.||+++++.+.++ +|++++++++++|+|++..+. ++...+++++++.+.+
T Consensus 56 -LG~~~~~i~~vG~D~~g~~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (330)
T PLN02323 56 -LGGSSAFIGKVGDDEFGHMLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDLDLI 134 (330)
T ss_pred -cCCceeEEEEecCChhHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCChHHH
Confidence 999999999999999999999999999999999887665 799999999888999987664 4445677777777778
Q ss_pred CCCcEEEEEe-cCC---CHHHHHHHHHHHHHCCCeEEEECCChHHH----hhhhhHHHhhccCCCceEEEcCHHHHHHHh
Q 023557 169 KGSKWLVLRF-GMF---NFEVIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLESGDVDLCFANEDEAAELV 240 (280)
Q Consensus 169 ~~~~~v~i~~-~~~---~~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~~~l~~~l~~~~~dil~~N~~E~~~l~ 240 (280)
++++++|++. ... ....+..+++.+++.|.++++|++..... ...++.+.++++ .+|++++|++|+..++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dil~~n~~E~~~l~ 212 (330)
T PLN02323 135 RKAKIFHYGSISLITEPCRSAHLAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWD--EADIIKVSDEEVEFLT 212 (330)
T ss_pred ccCCEEEEechhccCchHHHHHHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHH--hCCEEEcCHHHHHHHh
Confidence 8999999882 211 22456788889999999999999743210 123445666777 8999999999999998
Q ss_pred cCCCCCcHHHHHHHHhcCCCEEEEEcCCCceEEEeCCc
Q 023557 241 RGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 241 ~~~~~~~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+... .+..++.+.+..+.+.+|||+|++|++++++++
T Consensus 213 g~~~-~~~~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~ 249 (330)
T PLN02323 213 GGDD-PDDDTVVKLWHPNLKLLLVTEGEEGCRYYTKDF 249 (330)
T ss_pred CCCC-ccHHHHHHHHhcCCCEEEEecCCCceEEEeCCC
Confidence 8542 223344455667889999999999999988764
No 12
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.97 E-value=8.4e-30 Score=221.08 Aligned_cols=226 Identities=21% Similarity=0.283 Sum_probs=173.7
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| ++++|++.++ +++| ..|..... .+....+|| ++|+|++|++ ||.+
T Consensus 1 ~i~~iG-~~~~D~i~~~-----~~~~-~~~~~~~~--------------------~~~~~~~GG-~~Nva~~l~~-lG~~ 51 (289)
T cd01944 1 KVLVIG-AAVVDIVLDV-----DKLP-ASGGDIEA--------------------KSKSYVIGG-GFNVMVAASR-LGIP 51 (289)
T ss_pred CeEEEc-ceeEEEEeec-----ccCC-CCCCcccc--------------------ceeeeccCc-HHHHHHHHHH-cCCC
Confidence 589999 9999999999 7776 33433322 257889999 9999999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i 176 (280)
+.++|.+|+|.+|+++++.|++.||+++++......|+.++++++++|+|+++.+.++...+++++++...+.+++++|+
T Consensus 52 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (289)
T cd01944 52 TVNAGPLGNGNWADQIRQAMRDEGIEILLPPRGGDDGGCLVALVEPDGERSFISISGAEQDWSTEWFATLTVAPYDYVYL 131 (289)
T ss_pred eEEEEEecCChHHHHHHHHHHHcCCccccccccCCCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhccccCCCCCEEEE
Confidence 99999999999999999999999999998877644788888888888999988887777666666665445788999999
Q ss_pred E-ecCC----CHHHHHHHHHHHHHCCCeEEEECCChHHHhhh-hhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHHH
Q 023557 177 R-FGMF----NFEVIQAAIRIAKQEGLSVSMDLASFEMVRNF-RTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEA 250 (280)
Q Consensus 177 ~-~~~~----~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~-~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~~ 250 (280)
+ +.+. ..+.+.++++.+ +.+.++++|++.... .+ .+.+.++++ ++|++++|++|+..+++.... +...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~D~~~~~~--~~~~~~~~~~l~--~~d~~~~n~~E~~~l~g~~~~-~~~~ 205 (289)
T cd01944 132 SGYTLASENASKVILLEWLEAL-PAGTTLVFDPGPRIS--DIPDTILQALMA--KRPIWSCNREEAAIFAERGDP-AAEA 205 (289)
T ss_pred eCccccCcchhHHHHHHHHHhc-cCCCEEEEcCccccc--ccCHHHHHHHHh--cCCEEccCHHHHHHHhCCCCc-chHH
Confidence 8 3221 244555566554 357899999975421 11 344667777 899999999999999986422 2223
Q ss_pred HH-HHHhcCCCEEEEEcCCCceEEEeCC
Q 023557 251 AL-EFLAKRCQWAVVTLGPNGCIAKHGK 277 (280)
Q Consensus 251 ~~-~~l~~~~~~vvvT~G~~Ga~~~~~~ 277 (280)
++ ++...+.+.++||+|++|+++++++
T Consensus 206 ~~~~~~~~~~~~vvvt~G~~Ga~~~~~~ 233 (289)
T cd01944 206 SALRIYAKTAAPVVVRLGSNGAWIRLPD 233 (289)
T ss_pred HHHHHHhccCCeEEEEECCCcEEEEecC
Confidence 23 3445678899999999999998843
No 13
>PLN02967 kinase
Probab=99.97 E-value=5.3e-30 Score=236.03 Aligned_cols=202 Identities=16% Similarity=0.155 Sum_probs=163.8
Q ss_pred CceeecCchHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeee-e
Q 023557 73 PIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMR-P 150 (280)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~-~ 150 (280)
.+...+||+++|+|++|++ ||.++.|+|.+|+|.+|+++++.|++.||+++++...+. +|++++++++++|+++++ .
T Consensus 237 ~~~~~~GGa~aNVAvaLAR-LG~~v~fIg~VGdD~~G~~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~~ 315 (581)
T PLN02967 237 KFVRAPGGSAGGVAIALAS-LGGKVAFMGKLGDDDYGQAMLYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTCV 315 (581)
T ss_pred ceeeecCcHHHHHHHHHHH-CCCCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEEEe
Confidence 5788899999999999997 999999999999999999999999999999999987665 799999999988987775 4
Q ss_pred cCCcCCCCCcccCcccccCCCcEEEEE-ecCC---CHHHHHHHHHHHHHCCCeEEEECCChHHH----hhhhhHHHhhcc
Q 023557 151 CLSNAVKIQADELIAEDVKGSKWLVLR-FGMF---NFEVIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLE 222 (280)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~~~~~~v~i~-~~~~---~~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~~~l~~~l~ 222 (280)
++++...++.++++.+.++++++||++ +.++ ....+.++++.+++.|++|+||++.+... ..+.+.+.++++
T Consensus 316 ~~gAd~~L~~~di~~~~l~~A~i~hfgg~~ll~e~~~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~ 395 (581)
T PLN02967 316 KPCAEDSLSKSEINIDVLKEAKMFYFNTHSLLDPTMRSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWN 395 (581)
T ss_pred cCChhhhCChhhcCHhHhcCCCEEEEeCchhcccchHHHHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHH
Confidence 567777788888877788999999999 3222 24778899999999999999999744211 123345667787
Q ss_pred CCCceEEEcCHHHHHHHhcCCCCC---------------cHHHHHHHHhcCCCEEEEEcCCCceEEEeCC
Q 023557 223 SGDVDLCFANEDEAAELVRGEENA---------------DSEAALEFLAKRCQWAVVTLGPNGCIAKHGK 277 (280)
Q Consensus 223 ~~~~dil~~N~~E~~~l~~~~~~~---------------~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~~ 277 (280)
++|+|++|++|+..++|..... ..+.+..++..+++.||||+|++|+++++++
T Consensus 396 --~aDILk~NeeEl~~LtG~~~~~e~~~~~~~~~~~~~~~~e~a~~l~~~g~k~VVVTlG~~Ga~~~~~~ 463 (581)
T PLN02967 396 --LADIIEVTKQELEFLCGIEPTEEFDTKDNDKSKFVHYSPEVVAPLWHENLKVLFVTNGTSKIHYYTKE 463 (581)
T ss_pred --hCCEEEECHHHHHHHhCCCccccccccccchhccccchHHHHHHHHhCCCCEEEEEECccceEEEECC
Confidence 8999999999999998853110 1122334455688999999999999998864
No 14
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.97 E-value=8e-30 Score=232.69 Aligned_cols=242 Identities=17% Similarity=0.119 Sum_probs=176.6
Q ss_pred CCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcC
Q 023557 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (280)
Q Consensus 15 ~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG 94 (280)
+++|+|+| .+++|++-..... +..+. ++=-+++-. ++ -....+...+||+++|+|++++| ||
T Consensus 125 ~~~v~~~G-e~liDf~~~~~~~-~~~~~-~~~~~~~~~-------~~-------~~~~~f~~~~GGa~aNVAvaLAR-LG 186 (496)
T PLN02543 125 PPLVCCFG-AVQKEFVPTVRVH-DNQMH-PDMYSQWKM-------LQ-------WDPPEFARAPGGPPSNVAISHVR-LG 186 (496)
T ss_pred CCeEEEeC-hhhhhhcCCCccc-ccccc-ccccccccc-------cc-------ccCCeeEeccCcHHHHHHHHHHH-CC
Confidence 56799999 9999999864110 11000 000000000 00 01236788999999999999997 99
Q ss_pred CcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEc--CCCceeee-ecCCcCCCCCcccCcccccCC
Q 023557 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVD--ASGNRTMR-PCLSNAVKIQADELIAEDVKG 170 (280)
Q Consensus 95 ~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~--~~g~r~~~-~~~~~~~~~~~~~l~~~~~~~ 170 (280)
.++.|+|.||+|.+|+++++.|+++|||++++.+.++ +|+++++.++ .+|++.++ ...++...+++++++.+.+++
T Consensus 187 ~~vafIG~VGdD~fG~~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~gr~~~~~~~~gA~~~L~~~di~~~~l~~ 266 (496)
T PLN02543 187 GRAAFMGKVGDDDFGEELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGGKMVAETVKEAAEDSLLASELNLAVLKE 266 (496)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCCCEEEEecCCCHHHhCChhhcCHhHhCC
Confidence 9999999999999999999999999999999998765 7999999874 34544332 334555677888888778899
Q ss_pred CcEEEEE-ecCCC---HHHHHHHHHHHHHCCCeEEEECCChHHH----hhhhhHHHhhccCCCceEEEcCHHHHHHHhcC
Q 023557 171 SKWLVLR-FGMFN---FEVIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLESGDVDLCFANEDEAAELVRG 242 (280)
Q Consensus 171 ~~~v~i~-~~~~~---~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~ 242 (280)
+++||++ ..+.. .+...++++.+++.|++|+||++.+... ...++.+.++++ .+|++++|++|++.+++.
T Consensus 267 a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~--~aDIl~~SeeEa~~Ltg~ 344 (496)
T PLN02543 267 ARMFHFNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWN--EADIIEVSRQELEFLLDE 344 (496)
T ss_pred CceEEECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHH--hCCEEEecHHHHHHHhCC
Confidence 9999999 32222 4678889999999999999999843211 122334566777 899999999999999875
Q ss_pred CC--------------------------CCcHHHHHHHHhcCCCEEEEEcCCCceEEEeC
Q 023557 243 EE--------------------------NADSEAALEFLAKRCQWAVVTLGPNGCIAKHG 276 (280)
Q Consensus 243 ~~--------------------------~~~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~ 276 (280)
.. ..+.+.+..++..+.+.||||+|++|++++++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~VVVT~G~~Ga~~~t~ 404 (496)
T PLN02543 345 DYYERKRNYPPQYYAESFEQTKNWRDYYHYTPEEIAPLWHDGLKLLLVTDGTLRIHYYTP 404 (496)
T ss_pred CcccccccccchhhhhhhhhhhcccccccCCHHHHHHHHHCCCCEEEEEcCCCcEEEEEC
Confidence 30 01234444455668899999999999999875
No 15
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.3e-29 Score=219.57 Aligned_cols=230 Identities=32% Similarity=0.475 Sum_probs=185.8
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| ++++|++... .+.+| ..++.... ......+||+++|+|+++++ ||.+
T Consensus 1 ~v~~iG-~~~vD~~~~~----~~~~~-~~~~~~~~--------------------~~~~~~~GG~~~N~A~~~a~-lG~~ 53 (311)
T COG0524 1 DVVVIG-EANVDLIAQV----VDRLP-EPGETVLG--------------------DFFKVAGGGKGANVAVALAR-LGAK 53 (311)
T ss_pred CEEEEC-chhhheehhh----ccCCC-CCcccccc--------------------cceeecCCchHHHHHHHHHH-cCCc
Confidence 589999 9999999974 15555 33322221 13578899999999999996 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCC-cCCCCCcccCcccccCCCcEE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLS-NAVKIQADELIAEDVKGSKWL 174 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~-~~~~~~~~~l~~~~~~~~~~v 174 (280)
+.++|.+|+|.+|+.+++.|++.|||++++..... +|+.+++.++++|+|++..+.+ +...++++++++..+...+++
T Consensus 54 ~~~~~~vG~D~~g~~~~~~l~~~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (311)
T COG0524 54 VALIGAVGDDDFGEFLLEELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDEDELAGADVL 133 (311)
T ss_pred eEEEEEecCcHHHHHHHHHHHHcCCccceEEEcCCCcceEEEEEEcCCCceeEEEECCcccccCChHHcChHHHhhcCee
Confidence 99999999999999999999999999999988776 7999999999889999998887 456677777776678899999
Q ss_pred EEE-ecC-CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHHHHH
Q 023557 175 VLR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAAL 252 (280)
Q Consensus 175 ~i~-~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~~~~ 252 (280)
|++ +.+ .+++....+++.+++.|..+++|++....... ++.+.++++ .+|++++|++|++.+++. ..+...+.
T Consensus 134 ~~~~~~l~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~-~~~~~~~l~--~~d~~~~n~~E~~~l~g~--~~~~~~~~ 208 (311)
T COG0524 134 HISGIQLEIPPEALLAALELAKAAGVTVSFDLNPRPALWD-RELLEELLA--LADILFPNEEEAELLTGL--EEDAEAAA 208 (311)
T ss_pred eEEEeecCCChHHHHHHHHHHHHcCCeEEEecCCCccccc-hhhHHHHHh--hCCEEeCCHHHHHHHhCC--CccHHHHH
Confidence 999 332 34588999999999999999999987642111 355677887 999999999999999884 12444443
Q ss_pred H-HHhcCCCEEEEEcCCCceEEEeCCc
Q 023557 253 E-FLAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 253 ~-~l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
. ++..+.+.+|||+|++|++++++++
T Consensus 209 ~~~~~~~~~~vvvt~G~~Ga~~~~~~~ 235 (311)
T COG0524 209 ALLLAKGVKTVVVTLGAEGAVVFTGGG 235 (311)
T ss_pred HHHhhcCCCEEEEEeCCCcEEEEeCCC
Confidence 3 4456899999999999999999753
No 16
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.97 E-value=3.4e-29 Score=217.60 Aligned_cols=227 Identities=26% Similarity=0.377 Sum_probs=173.2
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| +.++|++...+.. ... ..+....+||+++|+|++|++ ||.+
T Consensus 1 ~i~~iG-~~~iD~~~~~~~~-----------~~~--------------------~~~~~~~~GG~~~N~a~~la~-lg~~ 47 (294)
T cd01166 1 DVVTIG-EVMVDLSPPGGGR-----------LEQ--------------------ADSFRKFFGGAEANVAVGLAR-LGHR 47 (294)
T ss_pred CeEEec-hhheeeecCCCCc-----------cch--------------------hhccccccCChHHHHHHHHHh-cCCc
Confidence 589999 9999999876211 000 025678899999999999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCC--cCCCCCcccCcccccCCCcE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLS--NAVKIQADELIAEDVKGSKW 173 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 173 (280)
+.++|.+|+|.+|+.+++.|++.||+++++...+. +|+.+++.++++|+|++..+.+ +...++.++++.+.++++++
T Consensus 48 ~~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (294)
T cd01166 48 VALVTAVGDDPFGRFILAELRREGVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDEAALAGADH 127 (294)
T ss_pred eEEEEecCCCHHHHHHHHHHHHcCCCCceEEEeCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCCHHHHhCCCE
Confidence 99999999999999999999999999999966544 7999999998778888776643 33456666665567889999
Q ss_pred EEEEe-cC--CC--HHHHHHHHHHHHHCCCeEEEECCChHHH---hhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC
Q 023557 174 LVLRF-GM--FN--FEVIQAAIRIAKQEGLSVSMDLASFEMV---RNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN 245 (280)
Q Consensus 174 v~i~~-~~--~~--~~~~~~~~~~a~~~g~~v~~D~~~~~~~---~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~ 245 (280)
||++. .. .+ .+.+.++++.+++.+.++++|++..... ....+.+.++++ ++|++++|+.|++.+++....
T Consensus 128 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~--~~dil~~n~~E~~~l~~~~~~ 205 (294)
T cd01166 128 LHLSGITLALSESAREALLEALEAAKARGVTVSFDLNYRPKLWSAEEAREALEELLP--YVDIVLPSEEEAEALLGDEDP 205 (294)
T ss_pred EEEcCcchhhCHHHHHHHHHHHHHHHHcCCEEEECCCCcchhcChHHHHHHHHHHHH--hCCEEEcCHHHHHHHhCCCCc
Confidence 99993 21 12 2678889999999999999999753210 112344556676 899999999999999885321
Q ss_pred CcHHHHHHHHhcCCCEEEEEcCCCceEEEeCCc
Q 023557 246 ADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 246 ~~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
.+..+.++.+..+++.++||+|++|++++++++
T Consensus 206 ~~~~~~~~~l~~g~~~viit~G~~G~~~~~~~~ 238 (294)
T cd01166 206 TDAAERALALALGVKAVVVKLGAEGALVYTGGG 238 (294)
T ss_pred hhHHHHHHhhcCCccEEEEEEcCCceEEEECCc
Confidence 223333332245889999999999999988764
No 17
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.97 E-value=1.2e-28 Score=213.17 Aligned_cols=220 Identities=25% Similarity=0.358 Sum_probs=173.6
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| ++++|++..+ +++| ..|+.... .+....+||+++|+|.+|++ ||.+
T Consensus 1 ~i~~iG-~~~iD~~~~~-----~~~p-~~~~~~~~--------------------~~~~~~~GG~~~NvA~~l~~-lG~~ 52 (284)
T cd01945 1 RVLGVG-LAVLDLIYLV-----ASFP-GGDGKIVA--------------------TDYAVIGGGNAANAAVAVAR-LGGQ 52 (284)
T ss_pred CEEEEC-cceeEEEEEe-----ccCC-CCCCeEEE--------------------eEEEEecCCHHHHHHHHHHH-cCCC
Confidence 589999 9999999999 7777 33332221 25789999999999999996 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 175 (280)
+.++|.+|+|.+|+++++.|++.||++.++...++ +|+++++ +..++++++..+.+....++.++++++.+++++++|
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 131 (284)
T cd01945 53 ARLIGVVGDDAIGRLILAELAAEGVDTSFIVVAPGARSPISSI-TDITGDRATISITAIDTQAAPDSLPDAILGGADAVL 131 (284)
T ss_pred eEEEEEecCchHHHHHHHHHHHcCCCccceeecCCCCCccEEE-EccCCCceEEEecCCCCCCCcccCCHHHhCcCCEEE
Confidence 99999999999999999999999999999987654 6787776 344677776666666666777777776789999999
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHHHHHHHH
Q 023557 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFL 255 (280)
Q Consensus 176 i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~l 255 (280)
++.. .++...++++.+++.|.++++|+.... ..+ +.++++ .+|++++|++|++.+++.. +. ++.+.+
T Consensus 132 i~~~--~~~~~~~~~~~~~~~g~~v~~~~~~~~----~~~-~~~~~~--~~dil~~n~~e~~~l~~~~---~~-~~~~~l 198 (284)
T cd01945 132 VDGR--QPEAALHLAQEARARGIPIPLDLDGGG----LRV-LEELLP--LADHAICSENFLRPNTGSA---DD-EALELL 198 (284)
T ss_pred EcCC--CHHHHHHHHHHHHHcCCCeeEeccCCc----ccc-hHHHhc--cCCEEEeChhHHhhhcCCC---HH-HHHHHH
Confidence 9943 356778899999999987777665431 122 556776 8999999999999988752 22 455544
Q ss_pred -hcCCCEEEEEcCCCceEEEe-CCc
Q 023557 256 -AKRCQWAVVTLGPNGCIAKH-GKE 278 (280)
Q Consensus 256 -~~~~~~vvvT~G~~Ga~~~~-~~~ 278 (280)
+.+++.++||+|++|+++++ +++
T Consensus 199 ~~~~~~~vivt~G~~G~~~~~~~~~ 223 (284)
T cd01945 199 ASLGIPFVAVTLGEAGCLWLERDGE 223 (284)
T ss_pred HhcCCcEEEEEECCCCeEEEcCCCC
Confidence 45889999999999999998 443
No 18
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.97 E-value=1.3e-28 Score=212.52 Aligned_cols=218 Identities=27% Similarity=0.326 Sum_probs=171.4
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| ++++|+++.+ +++| ..++.... .+....+||++.|+|.++++ ||.+
T Consensus 1 ~v~~iG-~~~~D~~~~v-----~~~p-~~~~~~~~--------------------~~~~~~~GG~~~Nva~~l~~-lg~~ 52 (279)
T cd01942 1 DVAVVG-HLNYDIILKV-----ESFP-GPFESVLV--------------------KDLRREFGGSAGNTAVALAK-LGLS 52 (279)
T ss_pred CEEEEe-cceeeeEeec-----ccCC-CCCceEec--------------------ceeeecCCcHHHHHHHHHHH-cCCC
Confidence 589999 9999999999 7777 23322221 26789999999999999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCC-CCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~-~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 175 (280)
+.++|.+|+|.+|+.+++.|++.||+++++...+ .+|++++++++++++|++...+++...+++++ ....+++++++|
T Consensus 53 ~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 131 (279)
T cd01942 53 PGLVAAVGEDFHGRLYLEELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAYFYPGAMDELEPND-EADPDGLADIVH 131 (279)
T ss_pred ceEEEEecCCcchHHHHHHHHHcCCCccceEEcCCCCcceEEEEEcCCCCEEEEecCCcccccccCC-chhhhcccCEEE
Confidence 9999999999999999999999999999996544 47999999998888888876777666666554 445778999999
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHH---HHHhcCCCCCcHHHHH
Q 023557 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEA---AELVRGEENADSEAAL 252 (280)
Q Consensus 176 i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~---~~l~~~~~~~~~~~~~ 252 (280)
++.. . .+.++++.+++.|.++++|+++.... ...+.+.++++ ++|++++|++|+ ..+++.. +..
T Consensus 132 ~~~~--~--~~~~~~~~~~~~g~~v~~D~~~~~~~-~~~~~~~~~l~--~~dil~~n~~E~~~l~~~~~~~---~~~--- 198 (279)
T cd01942 132 LSSG--P--GLIELARELAAGGITVSFDPGQELPR-LSGEELEEILE--RADILFVNDYEAELLKERTGLS---EAE--- 198 (279)
T ss_pred eCCc--h--HHHHHHHHHHHcCCeEEEcchhhhhh-ccHHHHHHHHh--hCCEEecCHHHHHHHHhhcCCC---hHH---
Confidence 9943 1 46677778888899999999864211 11244666777 899999999999 4555531 211
Q ss_pred HHHhcCCCEEEEEcCCCceEEEeCCc
Q 023557 253 EFLAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 253 ~~l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
...+.+.++||+|++|++++++++
T Consensus 199 --~~~~~~~vvvt~G~~G~~~~~~~~ 222 (279)
T cd01942 199 --LASGVRVVVVTLGPKGAIVFEDGE 222 (279)
T ss_pred --HhcCCCEEEEEECCCceEEEECCc
Confidence 126789999999999999998664
No 19
>PRK09850 pseudouridine kinase; Provisional
Probab=99.97 E-value=1.4e-28 Score=215.74 Aligned_cols=226 Identities=21% Similarity=0.209 Sum_probs=171.9
Q ss_pred CCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhc
Q 023557 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (280)
Q Consensus 14 ~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~l 93 (280)
..+.|+++| ++++|+++.+ +. |.+.+.+.. ......+||+++|+|.++++ |
T Consensus 3 ~~~~i~~iG-~~~vD~~~~~-----~~-~~~~~~~~~---------------------~~~~~~~GG~~~NvA~~l~~-l 53 (313)
T PRK09850 3 EKDYVVIIG-SANIDVAGYS-----HE-SLNYADSNP---------------------GKIKFTPGGVGRNIAQNLAL-L 53 (313)
T ss_pred CCCcEEEEC-cEEEeeeccC-----CC-cCcCCCCCc---------------------eEEEEeCCcHHHHHHHHHHH-c
Confidence 456899999 9999999886 33 323333222 14678899999999999997 9
Q ss_pred CCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeec-CCcCCCCCcccCc--ccccC
Q 023557 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPC-LSNAVKIQADELI--AEDVK 169 (280)
Q Consensus 94 G~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~-~~~~~~~~~~~l~--~~~~~ 169 (280)
|.++.++|.+|+|.+|+.+++.|++.||+++++...++ +|++++++++++|+|++..+ .++...++.+.+. .+.++
T Consensus 54 G~~~~~ig~vG~D~~g~~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (313)
T PRK09850 54 GNKAWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLAQHREFIQ 133 (313)
T ss_pred CCCeEEEEEecCchhHHHHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999998876655 69999999998899987654 2334444444332 24578
Q ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCC--CCc
Q 023557 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE--NAD 247 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~--~~~ 247 (280)
+++++|++.. .+.+.+..+++.+ .++++++|+++.. ....+.++++ ++|++++|++|+..+++... ..+
T Consensus 134 ~~~~v~~~~~-~~~~~~~~~~~~~--~g~~v~~D~~~~~----~~~~~~~~l~--~~dil~~N~~Ea~~l~g~~~~~~~~ 204 (313)
T PRK09850 134 RAKVIVADCN-ISEEALAWILDNA--ANVPVFVDPVSAW----KCVKVRDRLN--QIHTLKPNRLEAETLSGIALSGRED 204 (313)
T ss_pred cCCEEEEeCC-CCHHHHHHHHHhc--cCCCEEEEcCCHH----HHHHHHhhhc--cceEEccCHHHHHHHhCCCCCCHHH
Confidence 8999999854 3666666666543 4889999998642 1234556676 89999999999999988532 124
Q ss_pred HHHHHHHH-hcCCCEEEEEcCCCceEEEeCC
Q 023557 248 SEAALEFL-AKRCQWAVVTLGPNGCIAKHGK 277 (280)
Q Consensus 248 ~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~ 277 (280)
..++.+.+ +.+.+.+|||+|++|+++++++
T Consensus 205 ~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~ 235 (313)
T PRK09850 205 VAKVAAWFHQHGLNRLVLSMGGDGVYYSDIS 235 (313)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCceEEEEcCC
Confidence 55566655 4578999999999999998753
No 20
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.97 E-value=2.2e-28 Score=224.52 Aligned_cols=243 Identities=22% Similarity=0.235 Sum_probs=176.5
Q ss_pred CCCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhh
Q 023557 13 SQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (280)
Q Consensus 13 ~~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~ 92 (280)
...++|+++| ++++|+++.+ +++| ..|+ .....+.......+. ......+|| ++|+|++|++
T Consensus 70 ~~~~~vl~lG-~~~vD~i~~V-----~~lP-~~~~------~~~~~~~~~~~~~~~---~~~~~~~GG-~~NvAvaLar- 131 (470)
T PLN02341 70 GKEIDVATLG-NLCVDIVLPV-----PELP-PPSR------EERKAYMEELAASPP---DKKSWEAGG-NCNFAIAAAR- 131 (470)
T ss_pred cccccEEEEC-CcceeEEEec-----CCCC-CCCH------HHHHHHHHhhccccc---ccceecCCh-HHHHHHHHHH-
Confidence 3456899999 9999999999 7787 3332 111111111110000 134455788 6899999997
Q ss_pred cCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCC---------CCceeEEEEEcCCCceeeeecCCcCCCCCcc--
Q 023557 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR---------GPTGQCVCLVDASGNRTMRPCLSNAVKIQAD-- 161 (280)
Q Consensus 93 lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~---------~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~-- 161 (280)
||.++.++|.+|+|.+|+++++.|++.||++.++...+ .+|+.++++++++|+|++.............
T Consensus 132 LG~~v~lig~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~ 211 (470)
T PLN02341 132 LGLRCSTIGHVGDEIYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWI 211 (470)
T ss_pred cCCCeEEEEEecCcHHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhh
Confidence 99999999999999999999999999999999887653 2599999999988888765433222111111
Q ss_pred -cC---cccccCCCcEEEEE-ec--CCCHHHHHHHHHHHHHCCCeEEEECCChHH-----HhhhhhHHHhhccCCCceEE
Q 023557 162 -EL---IAEDVKGSKWLVLR-FG--MFNFEVIQAAIRIAKQEGLSVSMDLASFEM-----VRNFRTPLLQLLESGDVDLC 229 (280)
Q Consensus 162 -~l---~~~~~~~~~~v~i~-~~--~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-----~~~~~~~l~~~l~~~~~dil 229 (280)
.+ ..+.++++++||++ +. ..+.+.+.++++.+++.|.++++|++.... .+..++.+.++++ ++|++
T Consensus 212 ~~l~~~~~~~l~~adiv~lsg~~~~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~--~~Dil 289 (470)
T PLN02341 212 SKLSAEAKMAIRQSKALFCNGYVFDELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLR--MSDVL 289 (470)
T ss_pred hcccHHHHhhhhcCCEEEEeceeCCcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHh--hCCEE
Confidence 11 12467899999999 42 246788899999999999999999975310 0112345677887 89999
Q ss_pred EcCHHHHHHHhcCCCCCcHHHHHHHH-hcC--CCEEEEEcCCCceEEEeCCc
Q 023557 230 FANEDEAAELVRGEENADSEAALEFL-AKR--CQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 230 ~~N~~E~~~l~~~~~~~~~~~~~~~l-~~~--~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++|++|+..+++. ++.+++++.+ ..+ .+.||||+|++|++++++++
T Consensus 290 ~~Ne~Ea~~l~g~---~~~~~a~~~l~~~g~~~k~VVVTlG~~Ga~~~~~~~ 338 (470)
T PLN02341 290 LLTSEEAEALTGI---RNPILAGQELLRPGIRTKWVVVKMGSKGSILVTRSS 338 (470)
T ss_pred EecHHHHHHHhCC---CCHHHHHHHHHhcCCCCCEEEEeeCCCCeEEEECCe
Confidence 9999999999885 3566666655 445 48999999999999998765
No 21
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.96 E-value=3.4e-28 Score=211.53 Aligned_cols=222 Identities=23% Similarity=0.328 Sum_probs=173.1
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| +.++|++...+. .+ .+....+||+++|+|.++++ ||.+
T Consensus 1 ~ilviG-~~~~D~~~~~~~-----~~-----------------------------~~~~~~~GG~~~n~a~~l~~-lg~~ 44 (295)
T cd01167 1 KVVCFG-EALIDFIPEGSG-----AP-----------------------------ETFTKAPGGAPANVAVALAR-LGGK 44 (295)
T ss_pred CEEEEc-ceeEEEecCCCC-----CC-----------------------------ccccccCCCcHHHHHHHHHh-cCCC
Confidence 589999 999999987622 11 15678899999999999996 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeC-CCCceeEEEEEcCCCceeeeecCCcCCCCCccc-CcccccCCCcEE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK-RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADE-LIAEDVKGSKWL 174 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~-~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~-l~~~~~~~~~~v 174 (280)
+.++|.+|+|.+|+.+++.|++.||++.++.+. +.+|++++++++++|+|++..+.+.......+. +..+.+++++++
T Consensus 45 v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 124 (295)
T cd01167 45 AAFIGKVGDDEFGDFLLETLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAADLLLDTELNPDLLSEADIL 124 (295)
T ss_pred eEEEEeecCcHHHHHHHHHHHHcCCCchheeecCCCCceEEEEEECCCCCEeEEeecCCcHhhhcCccCChhHhccCCEE
Confidence 999999999999999999999999999988754 448999999998889999887665543322221 344678899999
Q ss_pred EEE-ecCC---CHHHHHHHHHHHHHCCCeEEEECCChHHH----hhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCC
Q 023557 175 VLR-FGMF---NFEVIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENA 246 (280)
Q Consensus 175 ~i~-~~~~---~~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~ 246 (280)
|++ +... ..+.+.++++.+++.|.++++|++..... ...++.+.++++ ++|++++|++|+..+++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~--~~d~l~~n~~E~~~l~~~~--- 199 (295)
T cd01167 125 HFGSIALASEPSRSALLELLEAAKKAGVLISFDPNLRPPLWRDEEEARERIAELLE--LADIVKLSDEELELLFGEE--- 199 (295)
T ss_pred EEechhhccchHHHHHHHHHHHHHHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHH--hCCEEEecHHHHHHHhCCC---
Confidence 998 3221 23567888999999999999999743210 112344667777 8999999999999998853
Q ss_pred cHHHHHHHH-hcCCCEEEEEcCCCceEEEeCCcc
Q 023557 247 DSEAALEFL-AKRCQWAVVTLGPNGCIAKHGKEV 279 (280)
Q Consensus 247 ~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~~~ 279 (280)
..+++.+.+ +.+++.++||+|++|++++++++.
T Consensus 200 ~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~ 233 (295)
T cd01167 200 DPEEIAALLLLFGLKLVLVTRGADGALLYTKGGV 233 (295)
T ss_pred CHHHHHHHHhhcCCCEEEEecCCcceEEEECCcc
Confidence 444555544 568899999999999999987653
No 22
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.96 E-value=2.3e-28 Score=212.17 Aligned_cols=219 Identities=20% Similarity=0.268 Sum_probs=169.7
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
.|+++| ++++|+++.+ +++| ..|+.... .+....+||+++|+|.+|++ ||.+
T Consensus 1 ~v~~iG-~~~vD~~~~v-----~~~p-~~~~~~~~--------------------~~~~~~~GG~a~NvA~~la~-lG~~ 52 (290)
T cd01939 1 AVLCVG-LTVLDFITTV-----DKYP-FEDSDQRT--------------------TNGRWQRGGNASNSCTVLRL-LGLS 52 (290)
T ss_pred CEEEEe-eeeeEEEeee-----cCCC-CCCcceEe--------------------eeeeEecCCCHHHHHHHHHH-cCCc
Confidence 489999 9999999999 7777 33333322 14678899999999999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 175 (280)
+.++|.+|+|++|+.+++.|++.||++.++...+. .++.++++++++|+|+++.+.++...++.++++...+++++++|
T Consensus 53 ~~~~~~vG~D~~g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (290)
T cd01939 53 CEFLGVLSRGPVFESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVNDNNLPEVTYDDFSKIDLTQYGWIH 132 (290)
T ss_pred eEEEEeecCCHHHHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHhhhhhccCCEEE
Confidence 99999999999999999999999999998865544 46667777777888988877776667777766655568999999
Q ss_pred EEecCCCHHHHHHHHHHHHHCC-------CeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcH
Q 023557 176 LRFGMFNFEVIQAAIRIAKQEG-------LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADS 248 (280)
Q Consensus 176 i~~~~~~~~~~~~~~~~a~~~g-------~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~ 248 (280)
++.. .++...++++.+++.+ .++++|+... .+.+.++++ ++|++++|++|++.+ +. .+.
T Consensus 133 ~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~------~~~~~~~l~--~~di~~~n~~~~~~~-~~---~~~ 198 (290)
T cd01939 133 FEGR--NPDETLRMMQHIEEHNNRRPEIRITISVEVEKP------REELLELAA--YCDVVFVSKDWAQSR-GY---KSP 198 (290)
T ss_pred Eecc--CHHHHHHHHHHHHHhcCcCCCcceEEEEEeccC------chhhhhHHh--hCCEEEEEhHHHHhc-Cc---CCH
Confidence 9953 2345567777777766 6888998642 345667777 899999999998764 53 244
Q ss_pred HHHHHHH---hcCCCEEEEEcCCCceEEEeCC
Q 023557 249 EAALEFL---AKRCQWAVVTLGPNGCIAKHGK 277 (280)
Q Consensus 249 ~~~~~~l---~~~~~~vvvT~G~~Ga~~~~~~ 277 (280)
++++..+ .++.+.+|||+|++|+++++++
T Consensus 199 ~~~~~~~~~~~~~~~~vvvt~G~~G~~~~~~~ 230 (290)
T cd01939 199 EECLRGEGPRAKKAALLVCTWGDQGAGALGPD 230 (290)
T ss_pred HHHHHhhhhhccCCcEEEEEcccCCeEEEcCC
Confidence 4444332 2468899999999999998764
No 23
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.96 E-value=7.5e-28 Score=209.21 Aligned_cols=222 Identities=25% Similarity=0.377 Sum_probs=177.4
Q ss_pred CCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCcEEEEEe
Q 023557 23 PAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGA 102 (280)
Q Consensus 23 ~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~~~~~~~ 102 (280)
+++++|+++.+ +++| ..|+.... .++...+||++.|+|++|++ ||.++.+++.
T Consensus 1 G~~~~D~~~~~-----~~~p-~~~~~~~~--------------------~~~~~~~GG~~~Nva~~l~~-lg~~~~~~~~ 53 (293)
T TIGR02152 1 GSINMDLVLRT-----DRLP-KPGETVHG--------------------HSFQIGPGGKGANQAVAAAR-LGAEVSMIGK 53 (293)
T ss_pred CCceEeEEEEe-----CCCC-CCCCcEec--------------------CCceecCCCcHHHHHHHHHH-CCCCEEEEEE
Confidence 18999999999 7777 33443332 26789999999999999996 9999999999
Q ss_pred ecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcccCc--ccccCCCcEEEEEec
Q 023557 103 YGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELI--AEDVKGSKWLVLRFG 179 (280)
Q Consensus 103 vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~--~~~~~~~~~v~i~~~ 179 (280)
+|+|.+|+.+++.|++.||++.++...+. +|++++++++++|+|+++.+.++...+++++++ .+.++.+++++++..
T Consensus 54 vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (293)
T TIGR02152 54 VGDDAFGDELLENLKSNGIDTEYVGTVKDTPTGTAFITVDDTGENRIVVVAGANAELTPEDIDAAEALIAESDIVLLQLE 133 (293)
T ss_pred ecCCccHHHHHHHHHHcCCCeeEEEEcCCCCCceEEEEEcCCCCEEEEEECCcCCcCCHHHHHHHHhhhccCCEEEEecC
Confidence 99999999999999999999999987654 799999999988999988777776667766665 346789999999853
Q ss_pred CCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCC--CCcHHHHHHHH-h
Q 023557 180 MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE--NADSEAALEFL-A 256 (280)
Q Consensus 180 ~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~--~~~~~~~~~~l-~ 256 (280)
.+.+.+.++++.+++.+.++++|++... ... ..++++ ++|++++|++|+..+++... ..+..++.+.+ +
T Consensus 134 -~~~~~~~~~~~~~~~~~~~v~~D~~~~~--~~~---~~~~~~--~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~ 205 (293)
T TIGR02152 134 -IPLETVLEAAKIAKKHGVKVILNPAPAI--KDL---DDELLS--LVDIITPNETEAEILTGIEVTDEEDAEKAAEKLLE 205 (293)
T ss_pred -CCHHHHHHHHHHHHHcCCEEEEECCcCc--ccc---hHHHHh--cCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHHH
Confidence 3678888999999999999999997531 011 134555 89999999999999987642 22455555555 4
Q ss_pred cCCCEEEEEcCCCceEEEeCCcc
Q 023557 257 KRCQWAVVTLGPNGCIAKHGKEV 279 (280)
Q Consensus 257 ~~~~~vvvT~G~~Ga~~~~~~~~ 279 (280)
.+++.++||+|++|+++++++++
T Consensus 206 ~g~~~vvvt~G~~g~~~~~~~~~ 228 (293)
T TIGR02152 206 KGVKNVIITLGSKGALLVSKDES 228 (293)
T ss_pred cCCCeEEEEeCCCceEEEeCCce
Confidence 57899999999999999887643
No 24
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.96 E-value=2.8e-27 Score=202.82 Aligned_cols=209 Identities=21% Similarity=0.230 Sum_probs=162.3
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| ++++|+++.+ +++| ..|+.... .+....+||+++|+|.+|++ ||.+
T Consensus 1 ~il~iG-~~~iD~~~~~-----~~~~-~~~~~~~~--------------------~~~~~~~GG~~~Nva~~l~~-lG~~ 52 (265)
T cd01947 1 KIAVVG-HVEWDIFLSL-----DAPP-QPGGISHS--------------------SDSRESPGGGGANVAVQLAK-LGND 52 (265)
T ss_pred CEEEEe-eeeEEEEEEe-----cCCC-CCCceeec--------------------ccceeecCchHHHHHHHHHH-cCCc
Confidence 589999 9999999999 6666 33333332 26889999999999999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i 176 (280)
+.++|.+|+|.+|+.+++.|++ +++...+...+..|+.++++++++|+|+++...+.. .++++.+.+++++++|+
T Consensus 53 ~~~i~~vG~D~~g~~i~~~l~~-~~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~----~~~~~~~~~~~~~~~~~ 127 (265)
T cd01947 53 VRFFSNLGRDEIGIQSLEELES-GGDKHTVAWRDKPTRKTLSFIDPNGERTITVPGERL----EDDLKWPILDEGDGVFI 127 (265)
T ss_pred eEEEEEecCChHHHHHHHHHHh-cCCcceEEecCCCCceEEEEECCCCcceEEecCCCC----cccCCHhHhccCCEEEE
Confidence 9999999999999999999999 999888776655899999999988999887653322 23444556789999999
Q ss_pred EecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHHHHHHHHh
Q 023557 177 RFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFLA 256 (280)
Q Consensus 177 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~l~ 256 (280)
+... ...++++.+++.+ .+++|++... ....+.++++ ++|++++|++|+..+++ +...+.
T Consensus 128 ~~~~----~~~~~~~~a~~~~-~~~~d~~~~~----~~~~~~~~~~--~~d~~~~n~~e~~~l~~---------~~~~~~ 187 (265)
T cd01947 128 TAAA----VDKEAIRKCRETK-LVILQVTPRV----RVDELNQALI--PLDILIGSRLDPGELVV---------AEKIAG 187 (265)
T ss_pred eccc----ccHHHHHHHHHhC-CeEeccCccc----cchhHHHHhh--hCCEEEeCHHHHHHhhh---------HHHHHh
Confidence 9432 1245566677665 5778887542 1134566776 89999999999988753 223445
Q ss_pred cCCCEEEEEcCCCceEEEeCCc
Q 023557 257 KRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 257 ~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
.+.+.++||+|++|+++++++.
T Consensus 188 ~~~~~viit~G~~Ga~~~~~~~ 209 (265)
T cd01947 188 PFPRYLIVTEGELGAILYPGGR 209 (265)
T ss_pred ccCCEEEEEeCCCCeEEEECCe
Confidence 6889999999999999998664
No 25
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.1e-27 Score=203.52 Aligned_cols=223 Identities=26% Similarity=0.327 Sum_probs=181.1
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
||+.+-+||.+|+++.+ +.+ ..|+..++ .+....+||+|.|||+.|+. ||.+
T Consensus 1 mI~TvTLNPaiD~~~~l-----~~l--~~g~vNr~--------------------~~~~~~aGGKGINVa~vL~~-lG~~ 52 (310)
T COG1105 1 MIYTVTLNPALDYTVFL-----DEL--ELGEVNRV--------------------RAVTKTAGGKGINVARVLKD-LGIP 52 (310)
T ss_pred CeEEEecChhHhheeec-----ccc--cccceeee--------------------ccceecCCCCceeHHHHHHH-cCCC
Confidence 57888889999999999 444 34443332 37889999999999999996 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcC-CCceeeeecCCcCCCCCcccCcc------cccC
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDA-SGNRTMRPCLSNAVKIQADELIA------EDVK 169 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~-~g~r~~~~~~~~~~~~~~~~l~~------~~~~ 169 (280)
++.+|.+|.+ .|+.|.+.|++.||...++.+. +.|+.++.+.+. +++.|-+.. +.+.++++++.. ..++
T Consensus 53 ~~a~GflGg~-tg~~~~~~l~~~gi~~~fv~v~-g~TRinvki~~~~~~~~Tein~--~Gp~is~~~~~~~l~~~~~~l~ 128 (310)
T COG1105 53 VTALGFLGGF-TGEFFVALLKDEGIPDAFVEVK-GDTRINVKILDEEDGEETEINF--PGPEISEAELEQFLEQLKALLE 128 (310)
T ss_pred ceEEEecCCc-cHHHHHHHHHhcCCCceEEEcc-CCCeeeEEEEecCCCcEEEecC--CCCCCCHHHHHHHHHHHHHhcc
Confidence 9999999998 8999999999999999988886 579999999986 455666544 445677766652 3478
Q ss_pred CCcEEEEEecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCC
Q 023557 170 GSKWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENA 246 (280)
Q Consensus 170 ~~~~v~i~~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~ 246 (280)
+.|+|+++.++ ++.+.+.++++.+++.|+++++|.++. .|.+.+++ .+++|+||.+|++.++|.....
T Consensus 129 ~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~--------~L~~~L~~-~P~lIKPN~~EL~~~~g~~~~~ 199 (310)
T COG1105 129 SDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGE--------ALLAALEA-KPWLIKPNREELEALFGRELTT 199 (310)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChH--------HHHHHHcc-CCcEEecCHHHHHHHhCCCCCC
Confidence 89999999432 678999999999999999999999863 45556663 7999999999999999986432
Q ss_pred --cHHHHH-HHHhcCCCEEEEEcCCCceEEEeCCccC
Q 023557 247 --DSEAAL-EFLAKRCQWAVVTLGPNGCIAKHGKEVG 280 (280)
Q Consensus 247 --~~~~~~-~~l~~~~~~vvvT~G~~Ga~~~~~~~~~ 280 (280)
+...++ +++.+++++|+|++|++|+++++++++|
T Consensus 200 ~~d~i~~a~~l~~~g~~~ViVSlG~~Gal~~~~~~~~ 236 (310)
T COG1105 200 LEDVIKAARELLAEGIENVIVSLGADGALLVTAEGVY 236 (310)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEecCcccEEEccCCeE
Confidence 333344 4467799999999999999999988764
No 26
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.96 E-value=1.6e-27 Score=208.23 Aligned_cols=219 Identities=23% Similarity=0.262 Sum_probs=169.2
Q ss_pred EEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCcEE
Q 023557 19 LGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCG 98 (280)
Q Consensus 19 ~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~~~ 98 (280)
+.+++|+++|+++.+ +++| +|+.... .+....+||+++|+|.++++ ||.++.
T Consensus 2 ~~~~~~~~~D~~~~~-----~~~~--~g~~~~~--------------------~~~~~~~GG~~~NvA~~la~-lG~~v~ 53 (304)
T TIGR03828 2 YTVTLNPAIDLTIEL-----DGLT--LGEVNRV--------------------ESTRIDAGGKGINVSRVLKN-LGVDVV 53 (304)
T ss_pred EEEEcchHHeEEEEc-----cccc--cCceeec--------------------ccccccCCccHHHHHHHHHH-cCCCeE
Confidence 456679999999999 7765 4543332 26788999999999999997 999999
Q ss_pred EEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcc------cccCCCc
Q 023557 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------EDVKGSK 172 (280)
Q Consensus 99 ~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~------~~~~~~~ 172 (280)
++|.+|+| +|+.+++.|++.||+++++... ..|++++++++++|+++.+.+.+. .+++.+++. +.+++++
T Consensus 54 ~is~vG~D-~g~~~~~~L~~~gId~~~~~~~-~~t~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~ 129 (304)
T TIGR03828 54 ALGFLGGF-TGDFIEALLREEGIKTDFVRVP-GETRINVKIKEPSGTETKLNGPGP--EISEEELEALLEKLRAQLAEGD 129 (304)
T ss_pred EEEEecCc-hhHHHHHHHHHCCCcceEEECC-CCCeeeEEEEeCCCCEEEEECCCC--CCCHHHHHHHHHHHHHhccCCC
Confidence 99999999 6999999999999999988876 468888888887888887765543 244443321 3578999
Q ss_pred EEEEE-ec--CCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC--Cc
Q 023557 173 WLVLR-FG--MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN--AD 247 (280)
Q Consensus 173 ~v~i~-~~--~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~--~~ 247 (280)
++|++ +. ..+++.+..+++.+++.+.++++|++.. .+++.+. ..+|++++|++|++.+++.... ++
T Consensus 130 ~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~--------~~~~~~~-~~~~i~~~n~~E~~~l~g~~~~~~~~ 200 (304)
T TIGR03828 130 WLVLSGSLPPGVPPDFYAELIALAREKGAKVILDTSGE--------ALRDGLK-AKPFLIKPNDEELEELFGRELKTLEE 200 (304)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECChH--------HHHHHHh-cCCcEECcCHHHHHHHhCCCCCCHHH
Confidence 99998 32 2357888899999999999999999753 2233333 1679999999999999886421 23
Q ss_pred HHHHHHH-HhcCCCEEEEEcCCCceEEEeCCc
Q 023557 248 SEAALEF-LAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 248 ~~~~~~~-l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+.++.+. ++.+.+.+|||+|++|++++++++
T Consensus 201 ~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~ 232 (304)
T TIGR03828 201 IIEAARELLDLGAENVLISLGADGALLVTKEG 232 (304)
T ss_pred HHHHHHHHHHcCCCEEEEccCCCCcEEEcCCc
Confidence 3344444 456889999999999999988764
No 27
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.96 E-value=9.9e-27 Score=203.74 Aligned_cols=220 Identities=22% Similarity=0.311 Sum_probs=165.8
Q ss_pred EEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCcE
Q 023557 18 ILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPC 97 (280)
Q Consensus 18 i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~~ 97 (280)
|+.+.+||++|+++.+ ++++ .+++..+. +....+||+++|+|+++++ ||.++
T Consensus 2 ~~~~t~np~~D~~~~~-----~~~~--~~~~~~~~--------------------~~~~~~GG~~~NvA~~la~-LG~~~ 53 (309)
T PRK13508 2 ILTVTLNPSIDISYPL-----DELK--LDTVNRVV--------------------DVSKTAGGKGLNVTRVLSE-FGENV 53 (309)
T ss_pred EEEEecChHHeEEEEe-----CCee--eCCeEEec--------------------ceeecCCchHHHHHHHHHH-cCCCe
Confidence 5556669999999999 7665 33343332 5788899999999999997 99999
Q ss_pred EEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCc------ccccCCC
Q 023557 98 GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI------AEDVKGS 171 (280)
Q Consensus 98 ~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~------~~~~~~~ 171 (280)
.++|.+|+ .+|+.+++.|++ ||++.++... +.|++++++++ +|+|+++.+.++. ++.++.. .+.++++
T Consensus 54 ~~~~~vGd-~~G~~i~~~l~~-gI~~~~~~~~-~~t~~~~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 127 (309)
T PRK13508 54 LATGLIGG-ELGQFIAEHLDD-QIKHAFYKIK-GETRNCIAILH-EGQQTEILEKGPE--ISVQEADGFLHHFKQLLESV 127 (309)
T ss_pred EEEEEecC-hhHHHHHHHHHc-CCCceEEECC-CCCeeeEEEEe-CCCEEEEECCCCC--CCHHHHHHHHHHHHHhccCC
Confidence 99999996 689999999999 9999876653 46888888876 7889887766543 3332221 2457899
Q ss_pred cEEEEEecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcH
Q 023557 172 KWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADS 248 (280)
Q Consensus 172 ~~v~i~~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~ 248 (280)
|++|++... .+.+.+.++++.+++.|+++++|++... ...+...+. .+|++++|++|+..+++.....+.
T Consensus 128 ~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~~~~--~~dii~~n~~E~~~l~g~~~~~~~ 200 (309)
T PRK13508 128 EVVAISGSLPAGLPVDYYAQLIELANQAGKPVVLDCSGAA-----LQAVLESPY--KPTVIKPNIEELSQLLGKEVSEDL 200 (309)
T ss_pred CEEEEeCCCCCCcCHHHHHHHHHHHHHCCCEEEEECCcHH-----HHHHHhccC--CceEEccCHHHHHHHhCCCCCCCH
Confidence 999999321 2457788899999999999999998642 123333344 799999999999999986422233
Q ss_pred HH---HHH-HHhcCCCEEEEEcCCCceEEEeCCc
Q 023557 249 EA---ALE-FLAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 249 ~~---~~~-~l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++ +++ ++..+++.++||+|++|++++++++
T Consensus 201 ~~~~~~~~~~~~~g~~~vvvT~G~~G~~~~~~~~ 234 (309)
T PRK13508 201 DELKEVLQQPLFEGIEWIIVSLGADGAFAKHNDT 234 (309)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCceEEEeCCc
Confidence 33 332 3346899999999999999987664
No 28
>PRK09954 putative kinase; Provisional
Probab=99.96 E-value=1e-26 Score=207.91 Aligned_cols=223 Identities=18% Similarity=0.206 Sum_probs=166.0
Q ss_pred CCeEEEecCCeeEeEEeecChhHHH-hCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhc
Q 023557 15 AALILGLQPAALIDHVARVDWSLLD-QIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (280)
Q Consensus 15 ~~~i~~iG~~~~vD~~~~~~~~~l~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~l 93 (280)
...|+++| ++++|+++.+ + ++| ..++ .. .+....+||+++|+|+++++ |
T Consensus 57 ~~~v~viG-~~~vD~~~~~-----~~~~p-~~~~-~~---------------------~~~~~~~GG~~~NvA~~lar-L 106 (362)
T PRK09954 57 QEYCVVVG-AINMDIRGMA-----DIRYP-QAAS-HP---------------------GTIHCSAGGVGRNIAHNLAL-L 106 (362)
T ss_pred CccEEEEE-EEEEEEEEee-----CCcCc-CCCC-CC---------------------ceEEEecCcHHHHHHHHHHH-c
Confidence 34899999 9999999988 4 555 2221 11 25778899999999999997 9
Q ss_pred CCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCC--cCCCCCcccCc--cccc
Q 023557 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLS--NAVKIQADELI--AEDV 168 (280)
Q Consensus 94 G~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~--~~~~~~~~~l~--~~~~ 168 (280)
|.++.++|.+|+|.+|+++++.|++.||+++++...++ +|+.++++.++++++ ++...+ ....++++.+. .+.+
T Consensus 107 G~~v~~ig~VG~D~~G~~i~~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (362)
T PRK09954 107 GRDVHLLSAIGDDFYGETLLEETRRAGVNVSGCIRLHGQSTSTYLAIANRQDET-VLAINDTHILQQLTPQLLNGSRDLI 185 (362)
T ss_pred CCCeEEEEEECCCHHHHHHHHHHHHcCCCccceEEcCCCCCeEEEEEEcCCCCE-EEEEcCchhhhcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999998887665 688888887755544 443333 22345554443 2446
Q ss_pred CCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC--C
Q 023557 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN--A 246 (280)
Q Consensus 169 ~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~--~ 246 (280)
..+++++++.. .+.+....+++.+ .++++++|+++.. ....+.++++ ++|++++|++|++.+++.... +
T Consensus 186 ~~~~~v~~~~~-~~~~~~~~~~~~a--~~~~v~~D~~~~~----~~~~~~~~l~--~~dil~~n~~Ea~~l~g~~~~~~~ 256 (362)
T PRK09954 186 RHAGVVLADCN-LTAEALEWVFTLA--DEIPVFVDTVSEF----KAGKIKHWLA--HIHTLKPTQPELEILWGQAITSDA 256 (362)
T ss_pred hcCCEEEEECC-CCHHHHHHHHHhC--CCCcEEEECCCHH----Hhhhhhhhhc--cccEEecCHHHHHHHcCCCCCCHH
Confidence 78899998854 3566666666554 4789999998642 1233556777 899999999999999885322 2
Q ss_pred cHHHHHHHH-hcCCCEEEEEcCCCceEEEeCC
Q 023557 247 DSEAALEFL-AKRCQWAVVTLGPNGCIAKHGK 277 (280)
Q Consensus 247 ~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~ 277 (280)
+..++.+.+ +.+++.+|||+|++|+++++++
T Consensus 257 ~~~~~~~~l~~~g~~~Vvvt~G~~G~~~~~~~ 288 (362)
T PRK09954 257 DRNAAVNALHQQGVQQIFVYLPDESVFCSEKD 288 (362)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCccEEEEeCC
Confidence 344555555 5688999999999999988754
No 29
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.96 E-value=1.1e-27 Score=208.62 Aligned_cols=225 Identities=30% Similarity=0.427 Sum_probs=179.4
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| .+++|++..++. + .+..... .+....+||++.|+|.+|++ ||.+
T Consensus 3 ~v~~iG-~~~iD~~~~~~~-----~---~~~~~~~--------------------~~~~~~~GG~~~n~a~~l~~-LG~~ 52 (301)
T PF00294_consen 3 KVLVIG-EVNIDIIGYVDR-----F---KGDLVRV--------------------SSVKRSPGGAGANVAIALAR-LGAD 52 (301)
T ss_dssp EEEEES-EEEEEEEEESSS-----H---TTSEEEE--------------------SEEEEEEESHHHHHHHHHHH-TTSE
T ss_pred cEEEEC-ccceEEEeecCC-----c---CCcceec--------------------ceEEEecCcHHHHHHHHHHh-ccCc
Confidence 699999 999999999933 2 1221221 26889999999999999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 175 (280)
+.++|.+|+|.+|+.+++.|++.||+++++.+.++ +|++++++++++|+|++..+.+....++.+++.++.+.+++++|
T Consensus 53 v~~i~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (301)
T PF00294_consen 53 VALIGKVGDDFFGEIILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSPGANSDLTPDELDEEAIDEADILH 132 (301)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEEGGGGGGGHHHHHHHHHHTESEEE
T ss_pred ceEEeeccCcchhhhhhhccccccccccccccccccccceeEeeecccccceeeecccccccccccccccccccccccee
Confidence 99999999999999999999999999999986655 79999999998899999888777766666655667889999999
Q ss_pred EEe-cC---CCHHHHHHHHHHHHHCC--CeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHH
Q 023557 176 LRF-GM---FNFEVIQAAIRIAKQEG--LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSE 249 (280)
Q Consensus 176 i~~-~~---~~~~~~~~~~~~a~~~g--~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~ 249 (280)
++. .. .+.+.+..+.+.+++.+ .+++.++... .+++.+.++++ .+|++++|++|+..+++... .+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~--~~dil~~n~~E~~~l~~~~~-~~~~ 205 (301)
T PF00294_consen 133 LSGVSLPEGIPEDLLEALAKAAKKNGPFDPVFRDPSWD----DLREDLKELLP--YADILKPNEEEAEALTGSKI-DDPE 205 (301)
T ss_dssp EESGHCSTTSHHHHHHHHHHHHHHTTEEEEEEEGGGSH----HHHHHHHHHHH--TSSEEEEEHHHHHHHHTCST-SSHH
T ss_pred ecccccccccccceeeeccccccccccccccccccccc----ccchhhhhhcc--ccchhccccccccccccccc-cchh
Confidence 996 22 34567777777777777 3455555443 14567777777 89999999999999998642 2455
Q ss_pred HHHHHH----hcCCCEEEEEcCCCceEEEeCCc
Q 023557 250 AALEFL----AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 250 ~~~~~l----~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++.+.+ ..+.+.++||+|++|++++++++
T Consensus 206 ~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~ 238 (301)
T PF00294_consen 206 DALAALRELQARGVKIVIVTLGEDGALYYTNDE 238 (301)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTE
T ss_pred hhhccccccchhhhhhhhccccccCcccccccc
Confidence 554433 36889999999999999997654
No 30
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.95 E-value=7.8e-27 Score=202.27 Aligned_cols=223 Identities=24% Similarity=0.335 Sum_probs=168.7
Q ss_pred EEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCcE
Q 023557 18 ILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPC 97 (280)
Q Consensus 18 i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~~ 97 (280)
|+++| .+++|+++.+ ++.| ..++... ......+||+++|+|.++++ ||.++
T Consensus 2 v~~~G-~~~~D~~~~~-----~~~~-~~~~~~~---------------------~~~~~~~GG~~~Nva~~l~~-lG~~~ 52 (288)
T cd01941 2 IVVIG-AANIDLRGKV-----SGSL-VPGTSNP---------------------GHVKQSPGGVGRNIAENLAR-LGVSV 52 (288)
T ss_pred eEEEE-eEEEeeeecc-----cCcc-ccCCCCC---------------------eeEEEccCcHHHHHHHHHHH-hCCCc
Confidence 79999 9999999998 5555 2332221 13678899999999999997 99999
Q ss_pred EEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeee-cCCcCCCCCcccCc--ccccCCCcEE
Q 023557 98 GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP-CLSNAVKIQADELI--AEDVKGSKWL 174 (280)
Q Consensus 98 ~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~-~~~~~~~~~~~~l~--~~~~~~~~~v 174 (280)
.++|.+|+|.+|+.+++.|++.||++.++.....+|+.++++++++|+|++.. ..+....++++.++ .+.+++++++
T Consensus 53 ~~~~~lG~D~~g~~i~~~L~~~gI~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 132 (288)
T cd01941 53 ALLSAVGDDSEGESILEESEKAGLNVRGIVFEGRSTASYTAILDKDGDLVVALADMDIYELLTPDFLRKIREALKEAKPI 132 (288)
T ss_pred EEEEEEecCccHHHHHHHHHHcCCccceeeeCCCCcceEEEEECCCCCEEEEEechHhhhhCCHHHHHHHHHHHhcCCEE
Confidence 99999999999999999999999999988754457999999998889988732 23333333332221 3467899999
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCC--cHHHHH
Q 023557 175 VLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENA--DSEAAL 252 (280)
Q Consensus 175 ~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~--~~~~~~ 252 (280)
+++.. .+++.+..+++.+++.+.++++|++... .+. .+.++++ ++|++++|++|+..+++....+ ....+.
T Consensus 133 ~~~~~-~~~~~~~~~~~~a~~~~~~v~~d~~~~~---~~~-~~~~~~~--~~dii~~n~~E~~~~~~~~~~~~~~~~~~~ 205 (288)
T cd01941 133 VVDAN-LPEEALEYLLALAAKHGVPVAFEPTSAP---KLK-KLFYLLH--AIDLLTPNRAELEALAGALIENNEDENKAA 205 (288)
T ss_pred EEeCC-CCHHHHHHHHHhhhhcCCcEEEEccchH---Hhc-cchhhcc--cceEEeCCHHHHHHHhCcccCCchhHHHHH
Confidence 98843 3677788889999999999999986531 111 1224666 8999999999999998864211 122333
Q ss_pred H-HHhcCCCEEEEEcCCCceEEEeC
Q 023557 253 E-FLAKRCQWAVVTLGPNGCIAKHG 276 (280)
Q Consensus 253 ~-~l~~~~~~vvvT~G~~Ga~~~~~ 276 (280)
+ ++..+++.++||+|++|++++++
T Consensus 206 ~~~~~~~~~~vvit~G~~Ga~~~~~ 230 (288)
T cd01941 206 KILLLPGIKNVIVTLGAKGVLLSSR 230 (288)
T ss_pred HHHHHcCCcEEEEEeCCCcEEEEec
Confidence 3 34458899999999999999886
No 31
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.95 E-value=1.7e-26 Score=201.80 Aligned_cols=217 Identities=27% Similarity=0.330 Sum_probs=168.1
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| +.++|++..- + ......+||+++|+|+++++ ||.+
T Consensus 4 ~il~iG-~~~iD~~~~~------------~-------------------------~~~~~~~GG~~~N~a~~l~~-LG~~ 44 (304)
T PRK09434 4 KVWVLG-DAVVDLIPEG------------E-------------------------NRYLKCPGGAPANVAVGIAR-LGGE 44 (304)
T ss_pred cEEEec-chheeeecCC------------C-------------------------CceeeCCCChHHHHHHHHHH-cCCC
Confidence 799999 9999997211 0 03456799999999999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeec--CCcCCCCCcccCcccccCCCcE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPC--LSNAVKIQADELIAEDVKGSKW 173 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 173 (280)
+.++|.+|+|.+|+.+++.|++.||++.++...++ +|+.+++.++++|+|++... .++...++.++++ .++++++
T Consensus 45 ~~~v~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 122 (304)
T PRK09434 45 SGFIGRVGDDPFGRFMQQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLP--PFRQGEW 122 (304)
T ss_pred ceEEEEecCchHHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhh--hhcCCCE
Confidence 99999999999999999999999999998877654 79999999987788986433 2333334444443 3677999
Q ss_pred EEEE-ecC-CC--HHHHHHHHHHHHHCCCeEEEECCChHHH----hhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC
Q 023557 174 LVLR-FGM-FN--FEVIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN 245 (280)
Q Consensus 174 v~i~-~~~-~~--~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~ 245 (280)
+|++ +.. .+ +....++++.+++.+.++++|++..... ..+++.+.++++ ++|++++|++|+..+++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dil~~n~~e~~~l~g~--- 197 (304)
T PRK09434 123 LHLCSIALSAEPSRSTTFEAMRRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALA--LADVVKLSEEELCFLSGT--- 197 (304)
T ss_pred EEEccccccCchHHHHHHHHHHHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHHH--hcceeeCCHHHHHHHhCC---
Confidence 9998 221 12 3566788899999999999999753211 123445566677 899999999999999885
Q ss_pred CcHHHHHHHHh--cCCCEEEEEcCCCceEEEeCCcc
Q 023557 246 ADSEAALEFLA--KRCQWAVVTLGPNGCIAKHGKEV 279 (280)
Q Consensus 246 ~~~~~~~~~l~--~~~~~vvvT~G~~Ga~~~~~~~~ 279 (280)
++.+++++.+. .+.+.+|||+|++|++++++++.
T Consensus 198 ~~~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~ 233 (304)
T PRK09434 198 SQLEDAIYALADRYPIALLLVTLGAEGVLVHTRGQV 233 (304)
T ss_pred CCHHHHHHHHHhhcCCcEEEEEecCCceEEEeCCce
Confidence 35667777664 36889999999999999987653
No 32
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.95 E-value=1.9e-26 Score=202.02 Aligned_cols=222 Identities=20% Similarity=0.286 Sum_probs=166.7
Q ss_pred EEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCcEE
Q 023557 19 LGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCG 98 (280)
Q Consensus 19 ~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~~~ 98 (280)
+.+-+||.+|+++.+ +++| .|++...+ +....+||+++|+|++|++ ||.++.
T Consensus 2 ~~~~~~p~~d~~~~~-----~~~~--~~~~~~~~--------------------~~~~~~GG~~~NvA~~la~-LG~~v~ 53 (309)
T TIGR01231 2 LTVTLNPSVDISYPL-----TALK--LDTVNRVQ--------------------EVSKTAGGKGLNVTRVLAQ-VGDPVL 53 (309)
T ss_pred EEEEcchHHeEEEEc-----CCee--eCceEeec--------------------eeeecCCccHHHHHHHHHH-cCCCeE
Confidence 334479999999999 7765 44444432 6889999999999999997 999999
Q ss_pred EEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCc--ccC--cccccCCCcEE
Q 023557 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQA--DEL--IAEDVKGSKWL 174 (280)
Q Consensus 99 ~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~--~~l--~~~~~~~~~~v 174 (280)
++|.+|+| +|+++++.|++.||++.++... ..|++++.++. +|+|+++.+.++...... ..+ ..+.++++++|
T Consensus 54 ~i~~vG~~-~G~~i~~~l~~~GV~~~~~~~~-~~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 130 (309)
T TIGR01231 54 ASGFLGGK-LGEFIEKELDHSDIKHAFYKIS-GETRNCIAILH-EGQQTEILEQGPEISNQEAAGFLKHFEQLLEKVEVV 130 (309)
T ss_pred EEEEecCh-hHHHHHHHHHHcCCceeEEECC-CCCEEeEEEEe-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhccCCEE
Confidence 99999975 9999999999999999988764 35777777775 688988776665321110 111 12457899999
Q ss_pred EEEecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHHHH
Q 023557 175 VLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAA 251 (280)
Q Consensus 175 ~i~~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~~~ 251 (280)
|++... .+...+.++++.+++.|.++++|++... ...+.+.+. ++|++++|++|+..+++.....+.+++
T Consensus 131 ~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~~~~--~~dil~~n~~E~~~l~g~~~~~~~~~~ 203 (309)
T TIGR01231 131 AISGSLPKGLPQDYYAQIIERCQNKGVPVVLDCSGAT-----LQTVLENPA--KPTVIKPNIEELSQLLNQELTEDLESL 203 (309)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHhCCCeEEEECChHH-----HHHHHhccC--CCeEEcCCHHHHHHHhCCCCCCCHHHH
Confidence 999321 3567888999999999999999998642 123344444 799999999999999985432344333
Q ss_pred ---HH-HHhcCCCEEEEEcCCCceEEEeCCc
Q 023557 252 ---LE-FLAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 252 ---~~-~l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++ ++..+.+.++||+|++|++++++++
T Consensus 204 ~~~~~~~~~~g~~~vivT~G~~G~~~~~~~~ 234 (309)
T TIGR01231 204 KQALSQPLFSGIEWIIVSLGAQGAFAKHGHT 234 (309)
T ss_pred HHHHHHHHHcCCCEEEEccCCCceEEEeCCe
Confidence 32 2346889999999999999988764
No 33
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.95 E-value=4.8e-26 Score=199.44 Aligned_cols=224 Identities=22% Similarity=0.275 Sum_probs=170.4
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~ 95 (280)
.+|++|-+||.+|+++.+ ++++ +|+..++. +....+||+++|+|++|++ ||.
T Consensus 2 ~~i~~~~~~p~~d~~~~~-----~~~~--~~~~~~~~--------------------~~~~~~GG~~~NvA~~l~~-lG~ 53 (309)
T PRK10294 2 VRIYTLTLAPSLDSATIT-----PQIY--PEGKLRCS--------------------APVFEPGGGGINVARAIAH-LGG 53 (309)
T ss_pred CeEEEEecChHHeEEEEe-----Ccee--eCCeEEec--------------------cceecCCccHHHHHHHHHH-cCC
Confidence 368888899999999999 6664 55555543 6778899999999999997 999
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcc-----cccCC
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA-----EDVKG 170 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~-----~~~~~ 170 (280)
++.+++.+|+ .+|+.+++.|++.||++.++...+..++.++++++++|+++++.+.+.. ++.+++.. +.+++
T Consensus 54 ~~~~i~~vG~-~~g~~i~~~l~~~gv~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 130 (309)
T PRK10294 54 SATAIFPAGG-ATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGEQYRFVMPGAA--LNEDEFRQLEEQVLEIES 130 (309)
T ss_pred CeEEEEEecC-ccHHHHHHHHHHcCCCceEEECCCCCeeeEEEEEcCCCcEEEEECCCCC--CCHHHHHHHHHHHHhcCC
Confidence 9999999996 7999999999999999999887654444456667777888877665543 45443332 23678
Q ss_pred CcEEEEEecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC--
Q 023557 171 SKWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN-- 245 (280)
Q Consensus 171 ~~~v~i~~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~-- 245 (280)
++++|++... .+.+.+.++++.+++.|+++++|+++.. .+. .. .++ .+|++++|++|+..+++....
T Consensus 131 ~~~~~i~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~----~~~-~~-~~~--~~~~i~~n~~E~~~l~g~~~~~~ 202 (309)
T PRK10294 131 GAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIIDSSGDA----LSA-AL-AIG--NIELVKPNQKELSALVNRDLTQP 202 (309)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCHH----HHH-HH-hcC--CCeEECCCHHHHHHHhCCCCCCH
Confidence 9999998321 2467888999999999999999997531 111 11 133 799999999999999886421
Q ss_pred CcHHHHHHHH-hcC-CCEEEEEcCCCceEEEeCCc
Q 023557 246 ADSEAALEFL-AKR-CQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 246 ~~~~~~~~~l-~~~-~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+++.++++.+ ..+ .+.+|||+|++|++++++++
T Consensus 203 ~~~~~a~~~l~~~~~~~~vvvT~G~~G~~~~~~~~ 237 (309)
T PRK10294 203 DDVRKAAQELVNSGKAKRVVVSLGPQGALGVDSEN 237 (309)
T ss_pred HHHHHHHHHHHHcCCCCEEEEecCCCceEEEcCCc
Confidence 2344555544 445 78999999999999988654
No 34
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.95 E-value=2.9e-26 Score=196.30 Aligned_cols=206 Identities=20% Similarity=0.240 Sum_probs=158.3
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| ..++|++... ....+||+++|+|.+|++ ||.+
T Consensus 1 ~v~~iG-~~~~D~~~~~----------------------------------------~~~~~GG~~~Nva~~la~-lG~~ 38 (264)
T cd01940 1 RLAAIG-DNVVDKYLHL----------------------------------------GKMYPGGNALNVAVYAKR-LGHE 38 (264)
T ss_pred CeEEEc-ceEEEEeccC----------------------------------------ceecCCCcHHHHHHHHHH-cCCC
Confidence 589999 9999998431 346699999999999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecC-CcCCCCCcccCcccccCCCcEEE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL-SNAVKIQADELIAEDVKGSKWLV 175 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~-~~~~~~~~~~l~~~~~~~~~~v~ 175 (280)
+.++|.+|+|.+|+.+++.|++.||+++++...+++|+.+++.. ++|+|++..+. ++.....+.+...+.+++++++|
T Consensus 39 ~~~~~~vG~D~~g~~i~~~l~~~gI~~~~v~~~~~~t~~~~~~~-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 117 (264)
T cd01940 39 SAYIGAVGNDDAGAHVRSTLKRLGVDISHCRVKEGENAVADVEL-VDGDRIFGLSNKGGVAREHPFEADLEYLSQFDLVH 117 (264)
T ss_pred eeEEecccCchhHHHHHHHHHHcCCChhheEEcCCCCceEEEEe-cCCceEEEeecCCcHHhcccCcccHhHHhcCCEEE
Confidence 99999999999999999999999999999887656788888554 57888876543 43332222222335678999999
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHHHHHH-H
Q 023557 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALE-F 254 (280)
Q Consensus 176 i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~~~~~-~ 254 (280)
++.. .+.+.+.++++.+++.++++++|++... ..+.+.++++ ++|++++|++|... .+..++++ +
T Consensus 118 ~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~----~~~~~~~~~~--~~d~~~~~~~~~~~-------~~~~~~~~~l 183 (264)
T cd01940 118 TGIY-SHEGHLEKALQALVGAGALISFDFSDRW----DDDYLQLVCP--YVDFAFFSASDLSD-------EEVKAKLKEA 183 (264)
T ss_pred Eccc-ccHHHHHHHHHHHHHcCCEEEEcCcccC----CHHHHHhhcc--cCCEEEechhhcCc-------chHHHHHHHH
Confidence 9932 1356788899999999999999998641 1123456676 89999999876521 23444444 4
Q ss_pred HhcCCCEEEEEcCCCceEEEeCCcc
Q 023557 255 LAKRCQWAVVTLGPNGCIAKHGKEV 279 (280)
Q Consensus 255 l~~~~~~vvvT~G~~Ga~~~~~~~~ 279 (280)
++.+++.+|||+|++|++++++++.
T Consensus 184 ~~~~~~~vvvT~G~~G~~~~~~~~~ 208 (264)
T cd01940 184 VSRGAKLVIVTRGEDGAIAYDGAVF 208 (264)
T ss_pred HHcCCCEEEEEECCCCeEEEeCCeE
Confidence 4668899999999999999886643
No 35
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.95 E-value=4.3e-26 Score=199.13 Aligned_cols=224 Identities=25% Similarity=0.306 Sum_probs=163.3
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| +.++|+++.++. +++|.+... ... ........+|| ++|+|.+|++ ||.+
T Consensus 1 ~vl~iG-~~~~D~~~~~~~---~~~~~~~~~-~~~------------------~~~~~~~~~GG-~~NvA~~la~-LG~~ 55 (304)
T cd01172 1 KVLVVG-DVILDEYLYGDV---ERISPEAPV-PVV------------------KVEREEIRLGG-AANVANNLAS-LGAK 55 (304)
T ss_pred CEEEEc-ceeEEeeEeecc---ccccCCCCc-ceE------------------EeeeEEecCcH-HHHHHHHHHH-hCCC
Confidence 589999 999999998632 344311111 000 01246678999 5899999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccC------cccccCC
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADEL------IAEDVKG 170 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l------~~~~~~~ 170 (280)
+.++|.+|+|.+|+++++.|++.||++.++.....+|+.+++++++ +++.+..+.+....++.... ..+.+++
T Consensus 56 ~~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (304)
T cd01172 56 VTLLGVVGDDEAGDLLRKLLEKEGIDTDGIVDEGRPTTTKTRVIAR-NQQLLRVDREDDSPLSAEEEQRLIERIAERLPE 134 (304)
T ss_pred eEEEEEEcCCccHHHHHHHHHhCCCCcceEecCCCCceEEEEEecC-CcEEEEEecCCCCCCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999854443468888888874 45655444433333433211 1245789
Q ss_pred CcEEEEE-ec--CCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCC--C
Q 023557 171 SKWLVLR-FG--MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE--N 245 (280)
Q Consensus 171 ~~~v~i~-~~--~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~--~ 245 (280)
+++||++ +. .++++.+.++++.+++.++++++|++... +..++ .+|++++|++|++.+++... .
T Consensus 135 ~~~v~~s~~~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~~~---------~~~~~--~~d~l~~n~~E~~~l~~~~~~~~ 203 (304)
T cd01172 135 ADVVILSDYGKGVLTPRVIEALIAAARELGIPVLVDPKGRD---------YSKYR--GATLLTPNEKEAREALGDEINDD 203 (304)
T ss_pred CCEEEEEcCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCcc---------hhhcc--CCcEeCCCHHHHHHHhCCCCCCh
Confidence 9999997 32 24678888999999999999999997641 13455 79999999999999988532 1
Q ss_pred CcHHHHHHHH-h-cCCCEEEEEcCCCceEEEe-CC
Q 023557 246 ADSEAALEFL-A-KRCQWAVVTLGPNGCIAKH-GK 277 (280)
Q Consensus 246 ~~~~~~~~~l-~-~~~~~vvvT~G~~Ga~~~~-~~ 277 (280)
.+++++.+.+ + .+++.+|||+|++|+++++ ++
T Consensus 204 ~~~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~ 238 (304)
T cd01172 204 DELEAAGEKLLELLNLEALLVTLGEEGMTLFERDG 238 (304)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEcCCCccEEEcCCC
Confidence 2344555544 3 4789999999999999998 44
No 36
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.95 E-value=5.9e-26 Score=199.12 Aligned_cols=222 Identities=16% Similarity=0.103 Sum_probs=169.4
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~ 95 (280)
.+|+.+.+||++|+++.+ +++| +|+...++ +..+.+||+++|+|.++++ ||.
T Consensus 3 ~~~~~~~~~p~~D~~~~~-----~~~~--~~~~~~~~--------------------~~~~~~GG~~~Nva~~la~-lG~ 54 (312)
T PRK09513 3 RRVATITLNPAYDLVGFC-----PEIE--RGEVNLVK--------------------TTGLHAAGKGINVAKVLKD-LGI 54 (312)
T ss_pred ceEEEEecChHHeEEEEc-----Ccee--cCCeeeec--------------------ceeecCCchHHHHHHHHHH-cCC
Confidence 358888889999999999 7776 35544432 6889999999999999997 999
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCc------ccccC
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI------AEDVK 169 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~------~~~~~ 169 (280)
++.++|.+|+|.+|+. ++.|++.||++.++.. +++|+.++.+++++|+++.+...+. .+++.+.+ .+.++
T Consensus 55 ~~~~i~~vG~D~~~~~-~~~l~~~gv~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~ 130 (312)
T PRK09513 55 DVTVGGFLGKDNQDGF-QQLFSELGIANRFQVV-QGRTRINVKLTEKDGEVTDFNFSGF--EVTPADWERFVTDSLSWLG 130 (312)
T ss_pred CeEEEEEecCccHHHH-HHHHHHcCCCccEEEC-CCCCEEEEEEEeCCCcEEEEeCCCC--CCCHHHHHHHHHHHHhhcC
Confidence 9999999999999986 6889999999876644 3578888888887888886665442 34433321 24578
Q ss_pred CCcEEEEEecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC-
Q 023557 170 GSKWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN- 245 (280)
Q Consensus 170 ~~~~v~i~~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~- 245 (280)
++|+||++... ...+.+.++++.+++.|.++++|++.. .+++.+. ..++++++|++|+..+++....
T Consensus 131 ~~d~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~--------~~~~~~~-~~~~~l~~n~~E~~~l~g~~~~~ 201 (312)
T PRK09513 131 QFDMVAVSGSLPRGVSPEAFTDWMTRLRSQCPCIIFDSSRE--------ALVAGLK-AAPWLVKPNRRELEIWAGRKLPE 201 (312)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHhcCCEEEEECChH--------HHHHHhc-cCCeEEcCCHHHHHHHhCCCCCC
Confidence 99999999321 245778888999999999999999753 1233333 2689999999999999986421
Q ss_pred -CcHHHHHHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 246 -ADSEAALEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 246 -~~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+++.++.+.+ +.+++.+|||+|++|++++++++
T Consensus 202 ~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 236 (312)
T PRK09513 202 LKDVIEAAHALREQGIAHVVISLGAEGALWVNASG 236 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCCcEEEeCCc
Confidence 1233445544 56899999999999999987654
No 37
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=3e-26 Score=194.85 Aligned_cols=231 Identities=21% Similarity=0.277 Sum_probs=168.5
Q ss_pred CCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhc
Q 023557 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (280)
Q Consensus 14 ~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~l 93 (280)
..+.|+++| ++++|++..+ +++| ..|++.. ...+.+.+||+++|+|++++| |
T Consensus 8 ~~~~vv~fG-s~~~D~V~~~-----~~~p-~~ge~~~--------------------~~~f~~~~GG~~aN~Avaaar-L 59 (330)
T KOG2855|consen 8 EPPLVVVFG-SMLIDFVPST-----RRLP-NAGETWE--------------------PPGFKTAPGGKGANQAVAAAR-L 59 (330)
T ss_pred CCceEEEec-cceeeeeecc-----ccCC-Ccccccc--------------------CCcceecCCCcchhhhhHHHh-c
Confidence 467899999 9999999999 8887 4443111 126899999999999999997 9
Q ss_pred CCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCc--ccCcccccCC
Q 023557 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQA--DELIAEDVKG 170 (280)
Q Consensus 94 G~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~--~~l~~~~~~~ 170 (280)
|.++.|+|.+|+|.||+.+...|++.+|+++++...+. +|+++.+.+..+|++.+..+.+++....+ .++..+.++.
T Consensus 60 G~~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~~~~~i~~ 139 (330)
T KOG2855|consen 60 GGRVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENARTACATITVSKDGENRIIFVRGANADMLPEDSELNLEVIKE 139 (330)
T ss_pred CcceeeeecccchhhHHHHHHHHhhCCcccccceecCCCceEEEEEEEccCCceEEEEEecCchhcCcccccccHHHHhh
Confidence 99999999999999999999999999999999998766 79999999999999998888777755544 4556788999
Q ss_pred CcEEEEEecCC-C-HHHHHHH--HHHHHHCCCeEEEECCChHHH----hhhhhHHHhhccCCCceEEEcCHHHHHHHhcC
Q 023557 171 SKWLVLRFGMF-N-FEVIQAA--IRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLESGDVDLCFANEDEAAELVRG 242 (280)
Q Consensus 171 ~~~v~i~~~~~-~-~~~~~~~--~~~a~~~g~~v~~D~~~~~~~----~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~ 242 (280)
+.++|+..... + .....++ ++.++..+..+++||..+... ..-...+..+.. .+|++....+|+..+.+.
T Consensus 140 ak~~~~q~ei~~~~~~~s~~~~~~~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~--~adv~~~s~~e~~fl~~~ 217 (330)
T KOG2855|consen 140 AKVFHCQSEILIEEPMRSLHIAAVKVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWN--MADVIKVSSQELAFLTGI 217 (330)
T ss_pred ccEEEEeeecCCcchhHHHHHhhhhhhhcccccccCCCCccccccccccccHHHHHHHhh--hhhcccccHHHHHHhccC
Confidence 99999994321 1 1111222 445666677777777543210 000111222232 566666666666665554
Q ss_pred CCCCcHHHHHHHHhcCCCEEEEEcCCCceEEEeCCc
Q 023557 243 EENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 243 ~~~~~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
. ..+..++++.+.+.||||+|++||.+|+++.
T Consensus 218 ~----~~~~~~L~~~~~k~viVTlG~kG~~y~tk~~ 249 (330)
T KOG2855|consen 218 E----DDKILKLWHMKLKLVIVTLGEKGCRYYTKDF 249 (330)
T ss_pred c----cchHHHHhccCCCEEEEEeCCCceEEEecCC
Confidence 1 1111356677779999999999999998753
No 38
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.94 E-value=1.9e-26 Score=203.21 Aligned_cols=218 Identities=20% Similarity=0.175 Sum_probs=168.8
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhc-CC
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF-GV 95 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~l-G~ 95 (280)
+++++| .+++|.+...+ .. .+...+||+++|+|+++++ | |.
T Consensus 1 ~~~~~G-~~~~d~i~~~~-----~~-------------------------------~~~~~~GG~~~N~A~~~~~-l~g~ 42 (328)
T cd01943 1 DFTTLG-MFIIDEIEYPD-----SE-------------------------------PVTNVLGGAGTYAILGARL-FLPP 42 (328)
T ss_pred CccccC-cEEeeccccCC-----CC-------------------------------ccccccCCchhhHhhceee-ecCC
Confidence 478999 99999998872 10 4667899999999999986 8 44
Q ss_pred --cE--EEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCC
Q 023557 96 --PC--GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (280)
Q Consensus 96 --~~--~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~ 170 (280)
++ .+++.+|+| +|+.+++.|++.||++++ .+.++ +|+.++++++++++|.++.+.+.+..+++++++...+..
T Consensus 43 ~~~~~~~~~~~vG~D-~G~~l~~~L~~~GVd~~~-~~~~~~~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~ 120 (328)
T cd01943 43 PLSRSISWIVDKGSD-FPKSVEDELESWGTGMVF-RRDPGRLTTRGLNIYDGNDRRFFKYLTPKKRIDVSDDLNSTPLIR 120 (328)
T ss_pred ccccceeeEEecCCC-CCHHHHHHHHhcCCceEE-EeCCCCcchhhhhhcCCCCcceeeecCcccccccccccccccccC
Confidence 66 889999999 999999999999999988 55444 799999988888899888777777778888887777889
Q ss_pred CcEEEEEecC-CCHHHHHHHHHHHHH------CCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCC
Q 023557 171 SKWLVLRFGM-FNFEVIQAAIRIAKQ------EGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGE 243 (280)
Q Consensus 171 ~~~v~i~~~~-~~~~~~~~~~~~a~~------~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~ 243 (280)
++++|++... ...+...++++.+++ .+..+++|+++........+.+.++++ ++|++++|++|+..+++..
T Consensus 121 a~~~hl~~~~~~~~~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~~~~~~~~~~l~~~l~--~~dil~~n~~Ea~~l~g~~ 198 (328)
T cd01943 121 SSCIHLICSPERCASIVDDIINLFKLLKGNSPTRPKIVWEPLPDSCDPENLEDLLQALP--RVDVFSPNLEEAARLLGLP 198 (328)
T ss_pred CCeEEEECCHHHHHHHHHHHHHHHHhhccccCCccEEEEecCCcccChhhHHHHHHHhc--cCCEECCCHHHHHHHhCCC
Confidence 9999998431 112677888888888 889999999753111112345778887 8999999999999999864
Q ss_pred CCC-c-HHH-H----HHH----HhcCCCEEEEEcCCCceEEEeC
Q 023557 244 ENA-D-SEA-A----LEF----LAKRCQWAVVTLGPNGCIAKHG 276 (280)
Q Consensus 244 ~~~-~-~~~-~----~~~----l~~~~~~vvvT~G~~Ga~~~~~ 276 (280)
... + ... . ... ...+.+.+|||+|++|++++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vvvt~G~~Ga~~~~~ 242 (328)
T cd01943 199 TSEPSSDEEKEAVLQALLFSGILQDPGGGVVLRCGKLGCYVGSA 242 (328)
T ss_pred CCCccchhhhhhhHHHHHHHhhhccCCCEEEEEeCCCCCEEEec
Confidence 211 1 111 1 111 3457899999999999999874
No 39
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.94 E-value=2.2e-25 Score=193.47 Aligned_cols=217 Identities=24% Similarity=0.267 Sum_probs=164.7
Q ss_pred EEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCcEE
Q 023557 19 LGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCG 98 (280)
Q Consensus 19 ~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~~~ 98 (280)
.++| ++++|+++.+ +++| .++.... .+....+||+++|+|.+|++ ||.++.
T Consensus 4 ~~~~-~~~~D~~~~~-----~~~~--~~~~~~~--------------------~~~~~~~GG~~~Nva~~la~-lG~~v~ 54 (289)
T cd01164 4 TVTL-NPAIDLTIEL-----DQLQ--PGEVNRV--------------------SSTRKDAGGKGINVARVLKD-LGVEVT 54 (289)
T ss_pred EEec-ChHHeEEEEc-----Cccc--CCceeec--------------------ccccccCCcchhHHHHHHHH-cCCCeE
Confidence 4667 9999999999 6664 3332222 25778899999999999997 999999
Q ss_pred EEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcc------cccCCCc
Q 023557 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------EDVKGSK 172 (280)
Q Consensus 99 ~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~------~~~~~~~ 172 (280)
++|.+|+| +|+.+++.|++.||++.++... .+|++++++++.+++++.+...+. .+++++++. +.+++++
T Consensus 55 ~is~vG~D-~g~~i~~~l~~~gi~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 130 (289)
T cd01164 55 ALGFLGGF-TGDFFEALLKEEGIPDDFVEVA-GETRINVKIKEEDGTETEINEPGP--EISEEELEALLEKLKALLKKGD 130 (289)
T ss_pred EEEEccCc-hhHHHHHHHHHcCCCceEEECC-CCCEEEEEEEeCCCCEEEEeCCCC--CCCHHHHHHHHHHHHHhcCCCC
Confidence 99999998 8999999999999999988775 457888888886677766654433 344443321 3467899
Q ss_pred EEEEEecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhc-cCCCceEEEcCHHHHHHHhcCCCC--C
Q 023557 173 WLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLL-ESGDVDLCFANEDEAAELVRGEEN--A 246 (280)
Q Consensus 173 ~v~i~~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l-~~~~~dil~~N~~E~~~l~~~~~~--~ 246 (280)
++|++... .+.+....+++.+++.++++++|++... +.+.+ + .+|++++|++|++.+++.... +
T Consensus 131 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~--------~~~~~~~--~~dil~~n~~E~~~l~~~~~~~~~ 200 (289)
T cd01164 131 IVVLSGSLPPGVPADFYAELVRLAREKGARVILDTSGEA--------LLAALAA--KPFLIKPNREELEELFGRPLGDEE 200 (289)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHcCCeEEEECChHH--------HHHHHhc--CCcEECCCHHHHHHHhCCCCCCHH
Confidence 99998321 2246788889989999999999997532 22233 4 899999999999999885421 2
Q ss_pred cHHHHHHH-HhcCCCEEEEEcCCCceEEEeCCc
Q 023557 247 DSEAALEF-LAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 247 ~~~~~~~~-l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+..++++. .+++++.++||+|++|++++.+++
T Consensus 201 ~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~ 233 (289)
T cd01164 201 DVIAAARKLIERGAENVLVSLGADGALLVTKDG 233 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCEEEcCCc
Confidence 34455554 456889999999999999987754
No 40
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.94 E-value=6.5e-25 Score=192.70 Aligned_cols=225 Identities=21% Similarity=0.238 Sum_probs=161.2
Q ss_pred CCCeEEEecCCeeEeEEeecChhHHHhCC-CCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhh
Q 023557 14 QAALILGLQPAALIDHVARVDWSLLDQIP-GERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (280)
Q Consensus 14 ~~~~i~~iG~~~~vD~~~~~~~~~l~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~ 92 (280)
+.++|+++| ..++|+++..+. ++++ ..++... ........+|| ++|+|.++++
T Consensus 6 ~~~~il~iG-~~~iD~~~~~~~---~~~~~~~~~~~~--------------------~~~~~~~~~GG-a~NvA~~l~~- 59 (315)
T TIGR02198 6 KGAKVLVVG-DVMLDRYWYGKV---SRISPEAPVPVV--------------------KVEREEDRLGG-AANVARNIAS- 59 (315)
T ss_pred CCCcEEEEC-ceeEeeeeeecc---cccCCCCCCceE--------------------EEEEEEecCcH-HHHHHHHHHh-
Confidence 367899999 999999987311 3331 0011000 01245677899 6999999996
Q ss_pred cCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcc----cCc--c
Q 023557 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQAD----ELI--A 165 (280)
Q Consensus 93 lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~----~l~--~ 165 (280)
||.++.++|.+|+|.+|+++++.|++.||++.++...++ +|+.+++++++++ +...........++.. .+. .
T Consensus 60 lg~~v~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (315)
T TIGR02198 60 LGARVFLVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARNQ-QLLRVDFEERDPINAELEARLLAAIR 138 (315)
T ss_pred cCCceEEEEEEecchhHHHHHHHHHHCCCCcceEEECCCCCcceEEEEEcCCe-EEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999988877655 7999988888532 2222222222123321 111 2
Q ss_pred cccCCCcEEEEE-ec--CCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcC
Q 023557 166 EDVKGSKWLVLR-FG--MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRG 242 (280)
Q Consensus 166 ~~~~~~~~v~i~-~~--~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~ 242 (280)
+.++++|+||++ +. .++++.+..+++.+++.|+++++|+++. .+..++ .+|++++|++|++.+++.
T Consensus 139 ~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~---------~~~~~~--~~d~l~~n~~E~~~l~~~ 207 (315)
T TIGR02198 139 EQLASADAVVLSDYAKGVLTPRVVQEVIAAARKHGKPVLVDPKGK---------DFSRYR--GATLITPNRKEAEAAVGA 207 (315)
T ss_pred hhhhhCCEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEeCCCc---------chhhcC--CCcEECCCHHHHHHHhCC
Confidence 457899999998 32 2467888899999999999999999753 123455 799999999999999883
Q ss_pred CC-CCcHHHHHHH-Hh-cCCCEEEEEcCCCceEEEeC
Q 023557 243 EE-NADSEAALEF-LA-KRCQWAVVTLGPNGCIAKHG 276 (280)
Q Consensus 243 ~~-~~~~~~~~~~-l~-~~~~~vvvT~G~~Ga~~~~~ 276 (280)
.. ..+..++.+. +. .+.+.++||+|++|++++++
T Consensus 208 ~~~~~~~~~~~~~l~~~~g~~~vivT~G~~G~~~~~~ 244 (315)
T TIGR02198 208 CDTEAELVQAAEKLLEELDLEALLVTRSEKGMTLFTR 244 (315)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEEcCCCCeEEEec
Confidence 21 1234444443 33 47899999999999999884
No 41
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.94 E-value=4e-25 Score=193.05 Aligned_cols=215 Identities=23% Similarity=0.244 Sum_probs=164.7
Q ss_pred CCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCcEEEEEe
Q 023557 23 PAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPCGLIGA 102 (280)
Q Consensus 23 ~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~~~~~~~ 102 (280)
-|+.+|+++.+ +++ ..|+.... .+....+||++.|+|+++++ ||.++.++|.
T Consensus 6 ~~~~~D~~~~~-----~~~--~~~~~~~~--------------------~~~~~~~GG~~~N~a~~l~~-lg~~~~~i~~ 57 (303)
T TIGR03168 6 LNPAIDLTIEV-----DGL--TPGEVNRV--------------------AAVRKDAGGKGINVARVLAR-LGAEVVATGF 57 (303)
T ss_pred cchHHeEEEEc-----Ccc--ccCceeec--------------------CcccccCCcchhhHHHHHHH-cCCCeEEEEE
Confidence 48899999999 554 34443332 25778999999999999997 9999999999
Q ss_pred ecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcc------cccCCCcEEEE
Q 023557 103 YGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------EDVKGSKWLVL 176 (280)
Q Consensus 103 vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~------~~~~~~~~v~i 176 (280)
+|+| +|+.+++.|++.||++.++... ..|++++++++++|+++.+...+. .+++++++. +.+++++++|+
T Consensus 58 vG~D-~g~~i~~~l~~~gI~~~~i~~~-~~t~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~i 133 (303)
T TIGR03168 58 LGGF-TGEFIEALLAEEGIKNDFVEVK-GETRINVKIKESSGEETELNEPGP--EISEEELEQLLEKLRELLASGDIVVI 133 (303)
T ss_pred eCCc-hhHHHHHHHHHcCCCceEEECC-CCCEEeEEEEeCCCCEEEEeCcCC--CCCHHHHHHHHHHHHHhccCCCEEEE
Confidence 9999 7999999999999999988775 357788888887787776655443 355554431 34789999999
Q ss_pred Eec---CCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC--CcHHHH
Q 023557 177 RFG---MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN--ADSEAA 251 (280)
Q Consensus 177 ~~~---~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~--~~~~~~ 251 (280)
+.. ..+.+.+..+++.+++.|+++++|++.. .+++.+. .++|++++|++|+..+++.... .+..++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~g~~v~~D~~~~--------~~~~~~~-~~~dil~~n~~E~~~l~g~~~~~~~~~~~~ 204 (303)
T TIGR03168 134 SGSLPPGVPPDFYAQLIAIARKRGAKVILDTSGE--------ALREALA-AKPFLIKPNHEELEELFGRELKTEEEIIEA 204 (303)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCcH--------HHHHHHh-cCCcEECCCHHHHHHHhCCCCCCHHHHHHH
Confidence 832 2456788899999999999999999753 1223332 1799999999999999886422 234445
Q ss_pred HHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 252 LEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 252 ~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++.+ ..+.+.+|||+|++|++++++++
T Consensus 205 ~~~l~~~g~~~vviT~g~~G~~~~~~~~ 232 (303)
T TIGR03168 205 ARELLDRGAENVLVSLGADGALLVTKEG 232 (303)
T ss_pred HHHHHHcCCCEEEEeecCCCcEEEeCCc
Confidence 5544 55788999999999999998764
No 42
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.93 E-value=1.1e-24 Score=186.16 Aligned_cols=202 Identities=19% Similarity=0.209 Sum_probs=153.4
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~ 95 (280)
.+|+++| .+++|++.+. -...+||+++|+|.+|++ ||.
T Consensus 1 ~~v~~iG-~~~~D~~~~~----------------------------------------~~~~~GG~~~NvA~~l~~-lG~ 38 (260)
T PRK09813 1 KKLATIG-DNCVDIYPQL----------------------------------------GKAFSGGNAVNVAVYCTR-YGI 38 (260)
T ss_pred CeEEEec-cceeeecccC----------------------------------------CccccCccHHHHHHHHHH-cCC
Confidence 4799999 9999998654 124699999999999997 999
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecC-CcCCCCCcccCcccccCCCcEE
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL-SNAVKIQADELIAEDVKGSKWL 174 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~-~~~~~~~~~~l~~~~~~~~~~v 174 (280)
++.++|.+|+|.+|+++++.|++.||+++++.+.+++|+.+++.++ +++|++..+. +....+..++.+.+.+++++++
T Consensus 39 ~~~~is~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~t~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 117 (260)
T PRK09813 39 QPGCITWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELH-DNDRVFGDYTEGVMADFALSEEDYAWLAQYDIV 117 (260)
T ss_pred cceEEEEecCcHHHHHHHHHHHHcCCcchheeeecCCCceEEEEEe-CCcEEeeccCCCcccccccCHHHHHHHHhCCEE
Confidence 9999999999999999999999999999999876667888888876 6888876543 4333333333333567899999
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHHHHHHH
Q 023557 175 VLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEF 254 (280)
Q Consensus 175 ~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~ 254 (280)
|++... ...++++.+++.++++++|++... ..+.+.++++ ++|++++|+++.. .++.++++.
T Consensus 118 ~~~~~~----~~~~~~~~~~~~~~~v~~D~~~~~----~~~~~~~~~~--~~d~~~~~~~~~~--------~~~~~~~~~ 179 (260)
T PRK09813 118 HAAIWG----HAEDAFPQLHAAGKLTAFDFSDKW----DSPLWQTLVP--HLDYAFASAPQED--------EFLRLKMKA 179 (260)
T ss_pred EEeccc----hHHHHHHHHHHcCCeEEEEcCCCc----cHHHHHHhCC--ceeEEEecCCcch--------HHHHHHHHH
Confidence 998311 134567777889999999998642 1122445666 8999998865421 234455554
Q ss_pred H-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 255 L-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 255 l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+ +.+.+.++||+|++|++++++++
T Consensus 180 ~~~~g~~~viit~G~~Ga~~~~~~~ 204 (260)
T PRK09813 180 IVARGAGVVIVTLGENGSIAWDGAQ 204 (260)
T ss_pred HHHcCCCEEEEEECCCceEEEECCE
Confidence 4 56889999999999999988764
No 43
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.92 E-value=5.5e-24 Score=196.72 Aligned_cols=228 Identities=16% Similarity=0.186 Sum_probs=159.9
Q ss_pred CCCeEEEecCCeeEeEEeecChhHHHhCCC-CCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhh
Q 023557 14 QAALILGLQPAALIDHVARVDWSLLDQIPG-ERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (280)
Q Consensus 14 ~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~ 92 (280)
+..+|+++| ++++|+++.++- ++++- .++... ........+|| ++|+|.+|++
T Consensus 9 ~~~~ilviG-~~~lD~~~~~~~---~~~~~~~~~~~~--------------------~~~~~~~~~GG-a~NvA~~la~- 62 (473)
T PRK11316 9 ERAGVLVVG-DVMLDRYWYGPT---SRISPEAPVPVV--------------------KVNQIEERPGG-AANVAMNIAS- 62 (473)
T ss_pred CCCcEEEEC-ccEEeeeeeccc---ceeCCCCCCCEE--------------------EeeeEEecCcH-HHHHHHHHHH-
Confidence 466899999 999999998632 23210 111111 11257788999 5899999997
Q ss_pred cCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCc---ccccC
Q 023557 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI---AEDVK 169 (280)
Q Consensus 93 lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~---~~~~~ 169 (280)
||.++.++|.+|+|.+|+++++.|++.||+++++...+.+|++++++++.+++...............+.+. ++.++
T Consensus 63 LG~~v~~i~~vG~D~~g~~i~~~L~~~gI~~~~v~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 142 (473)
T PRK11316 63 LGAQARLVGLTGIDEAARALSKLLAAVGVKCDFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLLERIEQALP 142 (473)
T ss_pred cCCcEEEEEEEcCCHHHHHHHHHHHHcCCceeEEEcCCCCCCeeEEEEeCCceEEecccccCCCchhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998877544799998888754432221111111122333221 24578
Q ss_pred CCcEEEEE-ecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC-Cc
Q 023557 170 GSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN-AD 247 (280)
Q Consensus 170 ~~~~v~i~-~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~-~~ 247 (280)
++++||++ +..-..+.+..+++.+++.|.++++|+++.. ...++ .+|++++|++|++.+++.... .+
T Consensus 143 ~~~~v~is~~~~~~~~~~~~~~~~~k~~g~~vv~Dp~~~~---------~~~~~--~~dil~pN~~Ea~~l~g~~~~~~~ 211 (473)
T PRK11316 143 SIGALVLSDYAKGALASVQAMIQLARKAGVPVLIDPKGTD---------FERYR--GATLLTPNLSEFEAVVGKCKDEAE 211 (473)
T ss_pred cCCEEEEecCCccchhHHHHHHHHHHhcCCeEEEeCCCCC---------ccccC--CCeEECcCHHHHHHHhCCCCCHHH
Confidence 99999998 3221235677888899999999999997531 12344 799999999999999884211 11
Q ss_pred HHH-HHHHHh-cCCCEEEEEcCCCceEEEeCCc
Q 023557 248 SEA-ALEFLA-KRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 248 ~~~-~~~~l~-~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
..+ +.+++. .+.+.++||+|++|++++++++
T Consensus 212 ~~~~~~~l~~~~g~~~vvVT~G~~G~~~~~~~~ 244 (473)
T PRK11316 212 LVEKGMKLIADYDLSALLVTRSEQGMTLLQPGK 244 (473)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCCcEEEecCC
Confidence 222 334443 4789999999999999887653
No 44
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.91 E-value=1.3e-22 Score=172.84 Aligned_cols=202 Identities=17% Similarity=0.118 Sum_probs=145.6
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| ++++|++...+ +....+||+++|+|++|++ ||.+
T Consensus 1 ~il~iG-~~~iD~~~~~~--------------------------------------~~~~~~GG~~~Nva~~la~-lG~~ 40 (254)
T cd01937 1 KIVIIG-HVTIDEIVTNG--------------------------------------SGVVKPGGPATYASLTLSR-LGLT 40 (254)
T ss_pred CeEEEc-ceeEEEEecCC--------------------------------------ceEEecCchhhhHHHHHHH-hCCC
Confidence 589999 99999997641 2467799999999999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i 176 (280)
+.++|.+|+|.+|+ ++.|++.||++..+ ....|+.+++.++.+|+|+++.+.+........ ...+.++|++|+
T Consensus 41 ~~~i~~vG~D~~g~--~~~l~~~gv~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 113 (254)
T cd01937 41 VKLVTKVGRDYPDK--WSDLFDNGIEVISL--LSTETTTFELNYTNEGRTRTLLAKCAAIPDTES---PLSTITAEIVIL 113 (254)
T ss_pred eEEEEeeCCCchHH--HHHHHHCCcEEEEe--cCCCeEEEEEEecCCCCeeeeeccccCCccccc---ccccCcccEEEE
Confidence 99999999999999 68899999996433 223566666667767788877665544322221 235788999999
Q ss_pred EecCCCHHHHHHHHHHHHHCCCeEEEECCChHH-HhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHHHHHHHH
Q 023557 177 RFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEM-VRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFL 255 (280)
Q Consensus 177 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~l 255 (280)
+.. +.+....+.+.+ .++++|++.... .......+.++++ ++|++++|++|+..+ .+.+++.+.+
T Consensus 114 ~~~--~~~~~~~~~~~~----~~v~~D~~~~~~~~~~~~~~~~~~l~--~~di~~~n~~E~~~~------~~~~~~~~~l 179 (254)
T cd01937 114 GPV--PEEISPSLFRKF----AFISLDAQGFLRRANQEKLIKCVILK--LHDVLKLSRVEAEVI------STPTELARLI 179 (254)
T ss_pred CCC--cchhcHHHHhhh----hheeEccccceeeccccchHHHhhcc--cCcEEEEcHHHHhhc------CCHHHHHHHH
Confidence 832 344444443322 789999975310 0011111346676 899999999999873 2456666655
Q ss_pred -hcCCCEEEEEcCCCceEEEeCCcc
Q 023557 256 -AKRCQWAVVTLGPNGCIAKHGKEV 279 (280)
Q Consensus 256 -~~~~~~vvvT~G~~Ga~~~~~~~~ 279 (280)
..+++.++||+|++|++++++++.
T Consensus 180 ~~~g~~~vvvt~g~~g~~~~~~~~~ 204 (254)
T cd01937 180 KETGVKEIIVTDGEEGGYIFDGNGK 204 (254)
T ss_pred HHcCCCEEEEeeCCcceEEEECCcc
Confidence 457899999999999999987653
No 45
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.90 E-value=3e-22 Score=172.71 Aligned_cols=192 Identities=20% Similarity=0.189 Sum_probs=136.3
Q ss_pred ceeecCchHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEc--CCCceeeee
Q 023557 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVD--ASGNRTMRP 150 (280)
Q Consensus 74 ~~~~~GG~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~--~~g~r~~~~ 150 (280)
....+||+++|+|.++++ || ++.++|.+|+| +|+.+++.|++.||+++++...+. +|........ .+++++...
T Consensus 20 ~~~~~GG~a~N~a~~la~-lg-~v~~i~~vG~D-~g~~~~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~ 96 (277)
T cd01946 20 VDKALGGSATYFSLSASY-FT-DVRLVGVVGED-FPEEDYKLLNSHNIVTLGLLSKEDGKTFHWAGRYHYDLNEADTLDT 96 (277)
T ss_pred eeeccCchHHHHHHHHHH-hc-cceeEEeccCc-ChHHHHHHHHhccCcceeEEEecCCCeEEEeeEehhhcccccchhh
Confidence 346699999999999997 97 79999999999 899999999999999999987543 4422111111 122233322
Q ss_pred cCCcCCCCCcccCcccccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEE
Q 023557 151 CLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCF 230 (280)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~ 230 (280)
..+....+.+. + .+.+++++++|++. ++++...++++.+++. .++++|+..... ....+.+.++++ ++|+++
T Consensus 97 ~~~~~~~~~~~-~-~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~-~~v~~D~~~~~~-~~~~~~~~~~l~--~~d~~~ 168 (277)
T cd01946 97 DLNVFADFDPQ-L-PEHYKDSEFVFLGN--IAPELQREVLEQVKDP-KLVVMDTMNFWI-SIKPEKLKKVLA--KVDVVI 168 (277)
T ss_pred hhhHHhhcCCC-C-hHHhhcCCEEEECC--CCHHHHHHHHHHHHhC-CEEEEccHHHhh-hhhHHHHHHHhc--cCCEEe
Confidence 21211222221 2 24578899999974 3667778888888877 889999843210 112345677787 899999
Q ss_pred cCHHHHHHHhcCCCCCcHHHHHHHH-hcCCCEEEEEcCCCceEEEeCCcc
Q 023557 231 ANEDEAAELVRGEENADSEAALEFL-AKRCQWAVVTLGPNGCIAKHGKEV 279 (280)
Q Consensus 231 ~N~~E~~~l~~~~~~~~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~~~ 279 (280)
+|++|+..+++. ++..++.+.+ ..+.+.+|+|+|.+|++++++++.
T Consensus 169 ~n~~E~~~l~g~---~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~ 215 (277)
T cd01946 169 INDGEARQLTGA---ANLVKAARLILAMGPKALIIKRGEYGALLFTDDGY 215 (277)
T ss_pred CCHHHHHHHhCC---chHHHHHHHHHHcCCCEEEEecCCCcEEEEECCce
Confidence 999999999884 3566666544 458899999999999999887653
No 46
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.89 E-value=9.6e-22 Score=172.95 Aligned_cols=206 Identities=15% Similarity=0.115 Sum_probs=156.1
Q ss_pred eccCCCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHH
Q 023557 10 REASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGL 89 (280)
Q Consensus 10 ~~~~~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~l 89 (280)
.++...++|+++| +.++|+++.++. .....+||+++|+|.++
T Consensus 6 ~~~~~~~~vlvvG-~~~~D~i~~~g~-------------------------------------~~~~~~GG~a~N~A~al 47 (335)
T PLN02630 6 KRPIPQRRVLIVG-NYCHDVLIQNGS-------------------------------------VTAESLGGAASFISNVL 47 (335)
T ss_pred CCCCCCCCEEEEe-eeeeeEEEeCCc-------------------------------------EEEEecCcHHHHHHHHH
Confidence 3556678999999 999999988611 13467999999999999
Q ss_pred HhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcC-----CCceeeeecCCcCCCCCcccCc
Q 023557 90 SVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDA-----SGNRTMRPCLSNAVKIQADELI 164 (280)
Q Consensus 90 a~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~-----~g~r~~~~~~~~~~~~~~~~l~ 164 (280)
++ ||.++.++|.+|+|.. .+|+...+.....+|+.+++++++ +++++++...+++..+++++++
T Consensus 48 ar-LG~~~~lis~VG~D~~----------~~v~~~~~~~~~~~T~~~~~~~~~g~~~~~~e~~i~~~~ga~~~l~~~di~ 116 (335)
T PLN02630 48 DA-LSVECELVSKVGPDFL----------YQVSHPPIVIPDSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDIP 116 (335)
T ss_pred HH-cCCceEEEEEecCCcc----------ccccccceecCCCCceEEEEEEcCCcccCCCCeEEEEeccccCCCChHHCC
Confidence 97 9999999999999942 377765554433479998888876 5688888889999999998887
Q ss_pred ccccCCCcEEEEEecCCCHHHHHHHHHHHHH-----CCCeEEEECCChH-HHhhhh-hHHHhhccCCCceEEEcCHHHHH
Q 023557 165 AEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQ-----EGLSVSMDLASFE-MVRNFR-TPLLQLLESGDVDLCFANEDEAA 237 (280)
Q Consensus 165 ~~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~-----~g~~v~~D~~~~~-~~~~~~-~~l~~~l~~~~~dil~~N~~E~~ 237 (280)
...+..++++++... .+++....+++.++. .|..+++|+++.. ...++. ..+.++++ .+|++++|++|+.
T Consensus 117 ~~~~~~~~~~~l~~e-i~~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~~~~~~~~L~--~iDil~~ne~Ea~ 193 (335)
T PLN02630 117 DMRYEFGMAVGVAGE-ILPETLERMVEICDVVVVDIQALIRVFDPVDGTVKLVKLEETGFYDMLP--RIGFLKASSEEAL 193 (335)
T ss_pred HHHhcccceeeecCC-CcHHHHHHHHHHhhhheeccCceEEecCCcccccccchhhHHHHHHHHH--hCCEEEecHHHHh
Confidence 656778888888644 357788888988887 7899999998631 000111 12456776 8999999999998
Q ss_pred HHhcCCCCCcHHHHHHHHhcCCCEEEEEcCCCceEEEeCCcc
Q 023557 238 ELVRGEENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEV 279 (280)
Q Consensus 238 ~l~~~~~~~~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~~ 279 (280)
.+ +.+++. + ...++||+|++|++++++++.
T Consensus 194 ~l-------~~~~~~----~-~~~vvvt~G~~G~~~~~~~~~ 223 (335)
T PLN02630 194 FI-------DVEEVR----Q-KCCVIVTNGKKGCRIYWKDGE 223 (335)
T ss_pred hc-------CHHHHc----c-CCEEEEEECCCceEEEECCee
Confidence 65 122221 1 238999999999999887653
No 47
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=1.3e-21 Score=168.30 Aligned_cols=227 Identities=19% Similarity=0.233 Sum_probs=165.8
Q ss_pred CCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcC
Q 023557 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (280)
Q Consensus 15 ~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG 94 (280)
..+|+++| ..++|.++.-.- ++. +++.+.|+..+.....++||++ |||.+++. ||
T Consensus 10 ~~kVLVvG-DvmLDrY~~G~~---~RI-------------------SPEAPVPVv~v~~e~~rlGGAa-NVa~Nias-LG 64 (467)
T COG2870 10 QAKVLVVG-DVMLDRYWYGKV---SRI-------------------SPEAPVPVVKVEKEEERLGGAA-NVAKNIAS-LG 64 (467)
T ss_pred CCcEEEEc-ceeeeeeccccc---ccc-------------------CCCCCCceEEecccccccccHH-HHHHHHHH-cC
Confidence 56899999 999999998732 111 1223344455567889999975 99999997 99
Q ss_pred CcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCC-cccCc---ccccCC
Q 023557 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQ-ADELI---AEDVKG 170 (280)
Q Consensus 95 ~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~-~~~l~---~~~~~~ 170 (280)
+++.++|.+|.|..|+.++..|...+|+..++.....+|.+...++..+ ++.+........... ...+- .+.+++
T Consensus 65 a~a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~n-QQllRvD~Ee~~~~~~~~~ll~~~~~~l~~ 143 (467)
T COG2870 65 ANAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRN-QQLLRLDFEEKFPIEDENKLLEKIKNALKS 143 (467)
T ss_pred CCEEEEEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeeccc-ceEEEecccccCcchhHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999777766656899999888743 344433332221111 11111 357899
Q ss_pred CcEEEEE-ecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC-CcH
Q 023557 171 SKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN-ADS 248 (280)
Q Consensus 171 ~~~v~i~-~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~-~~~ 248 (280)
.+.+++| |..--...+..+++.|++.|++|.+||-+. ++.++ + .+..++||..|+++..|.... .++
T Consensus 144 ~~~vVLSDY~KG~L~~~q~~I~~ar~~~~pVLvDPKg~--------Df~~Y-~--GAtLiTPN~~E~~~~vg~~~~e~el 212 (467)
T COG2870 144 FDALVLSDYAKGVLTNVQKMIDLAREAGIPVLVDPKGK--------DFEKY-R--GATLITPNLKEFEEAVGKCKSEEEL 212 (467)
T ss_pred CCEEEEeccccccchhHHHHHHHHHHcCCcEEECCCCc--------chhhh-C--CCeecCCCHHHHHHHHcccccHHHH
Confidence 9999999 654122237889999999999999999764 22222 2 799999999999999886532 223
Q ss_pred HHHHHHH-hc-CCCEEEEEcCCCceEEEeCCc
Q 023557 249 EAALEFL-AK-RCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 249 ~~~~~~l-~~-~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
.+....| +. +...++||++++|..++..++
T Consensus 213 ~~~g~kL~~~~~L~alLvTRsE~GMtL~~~~~ 244 (467)
T COG2870 213 EERGQKLKEELDLSALLVTRSEKGMTLFQEGK 244 (467)
T ss_pred HHHHHHHHHhhCcceEEEEeccCCceeecCCc
Confidence 3323333 33 568999999999999998664
No 48
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.84 E-value=2.4e-19 Score=146.48 Aligned_cols=162 Identities=28% Similarity=0.381 Sum_probs=124.2
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| ++++|+++.+ +++| ..|+.... .+....+||++.|+|.++++ ||.+
T Consensus 1 ~v~~iG-~~~~D~~~~~-----~~~~-~~~~~~~~--------------------~~~~~~~GG~~~n~a~~l~~-LG~~ 52 (196)
T cd00287 1 RVLVVG-SLLVDVILRV-----DALP-LPGGLVRP--------------------GDTEERAGGGAANVAVALAR-LGVS 52 (196)
T ss_pred CEEEEc-cceEEEEEEe-----ccCC-CCCCeEEe--------------------ceeeecCCCcHHHHHHHHHH-CCCc
Confidence 489999 9999999999 7777 33443332 26788999999999999996 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i 176 (280)
+.++| +|++|+
T Consensus 53 ~~~~~---------------------------------------------------------------------~~~v~i 63 (196)
T cd00287 53 VTLVG---------------------------------------------------------------------ADAVVI 63 (196)
T ss_pred EEEEE---------------------------------------------------------------------ccEEEE
Confidence 99999 799999
Q ss_pred EecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCC--cHHHHHH-
Q 023557 177 RFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENA--DSEAALE- 253 (280)
Q Consensus 177 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~--~~~~~~~- 253 (280)
+......+.+.++++.+++.+.++++|++....... ...+.++++ ++|++++|++|++.+++....+ +..++.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~-~~~~~~~~~--~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~ 140 (196)
T cd00287 64 SGLSPAPEAVLDALEEARRRGVPVVLDPGPRAVRLD-GEELEKLLP--GVDILTPNEEEAEALTGRRDLEVKEAAEAAAL 140 (196)
T ss_pred ecccCcHHHHHHHHHHHHHcCCeEEEeCCccccccc-cchHHHHHh--hCCEECCCHHHHHHHhCCCCCChHHHHHHHHH
Confidence 943211377888999999999999999986532111 122556676 8999999999999998864211 1223443
Q ss_pred HHhcCCCEEEEEcCCCceEEEe-CCc
Q 023557 254 FLAKRCQWAVVTLGPNGCIAKH-GKE 278 (280)
Q Consensus 254 ~l~~~~~~vvvT~G~~Ga~~~~-~~~ 278 (280)
+++.+.+.+++|+|++|+++++ ++.
T Consensus 141 l~~~g~~~vvvt~G~~g~~~~~~~~~ 166 (196)
T cd00287 141 LLSKGPKVVIVTLGEKGAIVATRGGT 166 (196)
T ss_pred HHhcCCCEEEEEECCCccEEEecCCc
Confidence 4456889999999999999998 544
No 49
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.1e-15 Score=123.43 Aligned_cols=221 Identities=21% Similarity=0.303 Sum_probs=168.1
Q ss_pred CCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcC
Q 023557 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (280)
Q Consensus 15 ~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG 94 (280)
+..|+|+| ...+|++-.+ +.+|.+.-. .+ +.+...+-||.+.|++..|.. ||
T Consensus 4 ~k~VLcVG-~~~lD~iTiv-----d~~~fe~~~-~r--------------------~~~g~wqRgG~asNvcTvlrl-LG 55 (308)
T KOG2947|consen 4 PKQVLCVG-CTVLDVITIV-----DKYPFEDSE-IR--------------------CLSGRWQRGGNASNVCTVLRL-LG 55 (308)
T ss_pred cceEEEec-cEEEEEEEec-----cCCCCCccc-ee--------------------hhhhhhhcCCCcchHHHHHHH-hC
Confidence 35799999 9999999999 888744321 11 125678899999999999996 99
Q ss_pred CcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcC-CCceeeeecCCcCCCCCcccCcccccCCCcE
Q 023557 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDA-SGNRTMRPCLSNAVKIQADELIAEDVKGSKW 173 (280)
Q Consensus 95 ~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~-~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (280)
+++.|+|.+...+.-+.++..|+++|||+++....+...+.+.++++. .|.||++.+....+..+.+++..-.+.++.|
T Consensus 56 ~~cef~Gvlsr~~~f~~lLddl~~rgIdishcpftd~~pp~ssiI~~r~s~trTil~~dks~p~vT~~dF~kvdl~qy~W 135 (308)
T KOG2947|consen 56 APCEFFGVLSRGHVFRFLLDDLRRRGIDISHCPFTDHSPPFSSIIINRNSGTRTILYCDKSLPDVTATDFEKVDLTQYGW 135 (308)
T ss_pred CchheeeecccchhHHHHHHHHHhcCCCcccCccccCCCCcceEEEecCCCceEEEEecCCCccccHHHhhhcccceeee
Confidence 999999999999899999999999999999998776666777777775 5889998887777888887776556788999
Q ss_pred EEEEecCCCHHHHHHHHHHHH--------HCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC
Q 023557 174 LVLRFGMFNFEVIQAAIRIAK--------QEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN 245 (280)
Q Consensus 174 v~i~~~~~~~~~~~~~~~~a~--------~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~ 245 (280)
+||.... +++.+ ++++... +.++.+++|+- +.++.+..+.. .+|++|.+.+=++.+ |.
T Consensus 136 ihfE~Rn-p~etl-kM~~~I~~~N~r~pe~qrI~vSvd~e------n~req~~~l~a--m~DyVf~sK~~a~~~-gf--- 201 (308)
T KOG2947|consen 136 IHFEARN-PSETL-KMLQRIDAHNTRQPEEQRIRVSVDVE------NPREQLFQLFA--MCDYVFVSKDVAKHL-GF--- 201 (308)
T ss_pred EEEecCC-hHHHH-HHHHHHHHhhcCCCccceEEEEEEec------CcHHHHHHHhh--cccEEEEEHHHHhhh-cc---
Confidence 9999431 33332 3333322 24578999995 44678888887 899999999988876 43
Q ss_pred CcHHHHHHHHh----cC--CCEEEEEcCCCceEEEeCC
Q 023557 246 ADSEAALEFLA----KR--CQWAVVTLGPNGCIAKHGK 277 (280)
Q Consensus 246 ~~~~~~~~~l~----~~--~~~vvvT~G~~Ga~~~~~~ 277 (280)
.++.++++.+. ++ ...+|+-.+++||-....+
T Consensus 202 ks~rea~~~l~~r~~~~~pkpv~I~~w~~eGA~~l~ad 239 (308)
T KOG2947|consen 202 KSPREACEGLYGRVPKGKPKPVLICPWASEGAGALGAD 239 (308)
T ss_pred CCHHHHHHHHHhhcccCCCCcEEEeccccccccccCCC
Confidence 36677766432 22 2478888888888766544
No 50
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.09 E-value=2.5e-09 Score=94.29 Aligned_cols=193 Identities=20% Similarity=0.274 Sum_probs=128.2
Q ss_pred eeccCCCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHH
Q 023557 9 NREASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRG 88 (280)
Q Consensus 9 ~~~~~~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~ 88 (280)
++..+...+=+++| +..+|..+.+|+.+ + .+|.+.. ....+..||.+.|.|.+
T Consensus 334 ~~~~~~~~KPv~vG-a~i~D~~~k~d~d~--K---~dG~sy~---------------------~~~~Qa~GGVarN~A~a 386 (614)
T KOG3009|consen 334 QPTASTTRKPVSVG-ATIVDFEAKTDEDV--K---DDGGSYN---------------------GQVVQAMGGVARNHADA 386 (614)
T ss_pred CCccccccCceeec-ceEEEeEEeecccc--c---ccCCccc---------------------chhhhhccchhhhHHHH
Confidence 34444444559999 99999999996631 1 2343332 15678899999999999
Q ss_pred HHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCccccc
Q 023557 89 LSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDV 168 (280)
Q Consensus 89 la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~ 168 (280)
+++ ||.++.+++++|+|. +++ ++.. ... ..-+..++++
T Consensus 387 ~~~-lg~d~~liSavG~d~-----------------------------------n~~--~~~~--~~~--~~~e~~~dl~ 424 (614)
T KOG3009|consen 387 LAR-LGCDSVLISAVGDDN-----------------------------------NGH--FFRQ--NSH--KIVESNEDLL 424 (614)
T ss_pred HHH-hcCCeeEEEEeccCC-----------------------------------cch--hhhh--hhh--hhhhhhhhhh
Confidence 996 999999999999992 111 1000 000 1111122344
Q ss_pred CCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCC-CC--
Q 023557 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGE-EN-- 245 (280)
Q Consensus 169 ~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~-~~-- 245 (280)
++++++++.. +++..+.++++ ++++.++|+|.|.+.... .+-|.-++. ...+.++||..|+..+.... ..
T Consensus 425 -~a~~I~~DsN-iS~~~Ma~il~-ak~~k~~V~fEPTd~~k~---~K~fk~l~v-~~i~~i~PN~~Ell~a~k~~~v~~n 497 (614)
T KOG3009|consen 425 -SADFILLDSN-ISVPVMARILE-AKKHKKQVWFEPTDIDKV---KKVFKTLLV-GAITAISPNANELLKAAKLCHVSVN 497 (614)
T ss_pred -cCCEEEEcCC-CCHHHHHHHHH-hhhccCceEecCCCchhh---hhhhhhcce-eeEEeeCCCHHHHHHHhhcCceeeC
Confidence 7899999966 47888899998 999999999999865422 233333333 36899999999996654322 11
Q ss_pred C----cHH---HHH----HHHhcCCCEEEEEcCCCceEEEeCC
Q 023557 246 A----DSE---AAL----EFLAKRCQWAVVTLGPNGCIAKHGK 277 (280)
Q Consensus 246 ~----~~~---~~~----~~l~~~~~~vvvT~G~~Ga~~~~~~ 277 (280)
. ... +.. +.+.......|+|+-.+|..+..++
T Consensus 498 ps~~q~~~~~~~~~~~~~~k~~~~~s~~I~tl~~~G~l~~yr~ 540 (614)
T KOG3009|consen 498 PSVIQTADGVLELIEKEKTKLLLNTSIFIVTLANKGSLVVYRN 540 (614)
T ss_pred hhhhccchHHHHHHHHHHHHhhcccceEEEEeccCceEEEecC
Confidence 1 111 111 2234467899999999999987654
No 51
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=98.52 E-value=5.9e-07 Score=76.44 Aligned_cols=109 Identities=19% Similarity=0.084 Sum_probs=74.1
Q ss_pred CCCcEEEEEecC--CCHHHHHHHHHHHHHC--CCeEEEECCChH------HHhhhhhHHHhhccCCCceEEEcCHHHHHH
Q 023557 169 KGSKWLVLRFGM--FNFEVIQAAIRIAKQE--GLSVSMDLASFE------MVRNFRTPLLQLLESGDVDLCFANEDEAAE 238 (280)
Q Consensus 169 ~~~~~v~i~~~~--~~~~~~~~~~~~a~~~--g~~v~~D~~~~~------~~~~~~~~l~~~l~~~~~dil~~N~~E~~~ 238 (280)
...+++.+.+.. ...+.+.++++.+++. +.++++||.-.. ..+...+.+.+++. +++|++++|.+|+..
T Consensus 71 ~~~~~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~-~~~dvi~pN~~Ea~~ 149 (254)
T cd01173 71 LEYDAVLTGYLGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLV-PLADIITPNQFELEL 149 (254)
T ss_pred ccCCEEEEecCCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHH-hcCCEECCcHHHHHH
Confidence 467888666421 2356788888888876 889999994110 01223344555554 379999999999999
Q ss_pred HhcCCCC--CcHHHHHHHH-hcCCCEEEEEcCCC------ceEEEeCCc
Q 023557 239 LVRGEEN--ADSEAALEFL-AKRCQWAVVTLGPN------GCIAKHGKE 278 (280)
Q Consensus 239 l~~~~~~--~~~~~~~~~l-~~~~~~vvvT~G~~------Ga~~~~~~~ 278 (280)
+++.... ++..++++.+ +.+++.|+||.|.. |++++++++
T Consensus 150 l~g~~~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~ 198 (254)
T cd01173 150 LTGKKINDLEDAKAAARALHAKGPKTVVVTSVELADDDRIEMLGSTATE 198 (254)
T ss_pred HcCCCcCCHHHHHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEecCc
Confidence 9986422 2344555544 56899999999985 888777543
No 52
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=98.47 E-value=2.4e-06 Score=73.83 Aligned_cols=108 Identities=12% Similarity=0.096 Sum_probs=68.6
Q ss_pred cCCCcEEEEEecCCCHH---HHHHHHHHHHH--CCCeEEEECCChH------HHhhhhhHHH-hhccCCCceEEEcCHHH
Q 023557 168 VKGSKWLVLRFGMFNFE---VIQAAIRIAKQ--EGLSVSMDLASFE------MVRNFRTPLL-QLLESGDVDLCFANEDE 235 (280)
Q Consensus 168 ~~~~~~v~i~~~~~~~~---~~~~~~~~a~~--~g~~v~~D~~~~~------~~~~~~~~l~-~~l~~~~~dil~~N~~E 235 (280)
+.++|.+++++.. +.+ .+.++++..+. .+.++++||.-.. ..+...+.+. .+++ .+|+++||..|
T Consensus 86 l~~~d~i~~G~l~-s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~--~advitPN~~E 162 (281)
T PRK08176 86 LRQLRAVTTGYMG-SASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLP--LAQGLTPNIFE 162 (281)
T ss_pred cccCCEEEECCCC-CHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHh--hcCEeCCCHHH
Confidence 4578999998542 443 44444544433 4678999996111 0011222343 3566 89999999999
Q ss_pred HHHHhcCCCCC--cHHHHHHHH-hcCCCEEEEEcCCCc-------eEEEeCCc
Q 023557 236 AAELVRGEENA--DSEAALEFL-AKRCQWAVVTLGPNG-------CIAKHGKE 278 (280)
Q Consensus 236 ~~~l~~~~~~~--~~~~~~~~l-~~~~~~vvvT~G~~G-------a~~~~~~~ 278 (280)
++.|+|....+ +..++++.+ +.+++.|+||.|+.| ++++++++
T Consensus 163 a~~L~g~~~~~~~~~~~~~~~l~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~~ 215 (281)
T PRK08176 163 LEILTGKPCRTLDSAIAAAKSLLSDTLKWVVITSAAGNEENQEMQVVVVTADS 215 (281)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCCEEEEeeccCCCCCCcEEEEEEeCCc
Confidence 99999864221 333445544 568999999999998 56665543
No 53
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=98.34 E-value=5.2e-06 Score=71.47 Aligned_cols=106 Identities=17% Similarity=0.065 Sum_probs=71.1
Q ss_pred cccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC
Q 023557 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN 245 (280)
Q Consensus 166 ~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~ 245 (280)
+.++.+|+++++.++.+...+.++++.+++.+.++++|++... +.+... ... ..+++++||..|++.|++....
T Consensus 88 ~~~~~~davvig~Gl~~~~~~~~l~~~~~~~~~pvVlDa~g~~----l~~~~~-~~~-~~~~vItPN~~El~~L~g~~~~ 161 (272)
T TIGR00196 88 ELLERYDVVVIGPGLGQDPSFKKAVEEVLELDKPVVLDADALN----LLTYDK-PKR-EGEVILTPHPGEFKRLLGLVNE 161 (272)
T ss_pred hhhccCCEEEEcCCCCCCHHHHHHHHHHHhcCCCEEEEhHHHH----HHhhcc-ccc-CCCEEECCCHHHHHHHhCCchh
Confidence 3457889999995443434477888888888999999997542 222211 112 2689999999999999986421
Q ss_pred --CcHHHHHHHHhcCCCEEEEEcCCCceEEEeCC
Q 023557 246 --ADSEAALEFLAKRCQWAVVTLGPNGCIAKHGK 277 (280)
Q Consensus 246 --~~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~~ 277 (280)
++..++.+.+.+....+|++.|.++.++...+
T Consensus 162 ~~~~~~~aa~~l~~~~~~vVv~kG~~~~i~~~~~ 195 (272)
T TIGR00196 162 IQGDRLEAAQDIAQKLQAVVVLKGAADVIAAPDG 195 (272)
T ss_pred hhhhHHHHHHHHHHHhCCEEEEcCCCCEEEcCCC
Confidence 23344444444444568888999998765433
No 54
>PRK12412 pyridoxal kinase; Reviewed
Probab=98.33 E-value=8.2e-06 Score=70.07 Aligned_cols=98 Identities=16% Similarity=0.075 Sum_probs=68.1
Q ss_pred CcEEEEEecCCCHHHHHHHHHHHHHCCCe-EEEECCChH------HHhhhhhHHH-hhccCCCceEEEcCHHHHHHHhcC
Q 023557 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLS-VSMDLASFE------MVRNFRTPLL-QLLESGDVDLCFANEDEAAELVRG 242 (280)
Q Consensus 171 ~~~v~i~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~------~~~~~~~~l~-~~l~~~~~dil~~N~~E~~~l~~~ 242 (280)
.+++.+.+. .+.+.+..+++.+++.+.+ +++||.... ..+...+.+. ++++ .+|+++||..|++.|++.
T Consensus 73 ~~~ikiG~l-~~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~--~advitpN~~Ea~~L~g~ 149 (268)
T PRK12412 73 VDALKTGML-GSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVP--KALVVTPNLFEAYQLSGV 149 (268)
T ss_pred CCEEEECCC-CCHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhc--cceEEcCCHHHHHHHhCc
Confidence 788988854 3678888888888888776 999995321 0011112223 3555 899999999999999986
Q ss_pred CCC--CcHHHHHHHH-hcCCCEEEEEcCCCce
Q 023557 243 EEN--ADSEAALEFL-AKRCQWAVVTLGPNGC 271 (280)
Q Consensus 243 ~~~--~~~~~~~~~l-~~~~~~vvvT~G~~Ga 271 (280)
... ++..++++.+ ..+++.|+||.|..|+
T Consensus 150 ~~~~~~~~~~aa~~l~~~g~~~ViIt~G~~g~ 181 (268)
T PRK12412 150 KINSLEDMKEAAKKIHALGAKYVLIKGGSKLG 181 (268)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccCCCC
Confidence 422 2344555544 5689999999999864
No 55
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=98.33 E-value=7.7e-06 Score=68.99 Aligned_cols=105 Identities=20% Similarity=0.064 Sum_probs=70.5
Q ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHC-CCeEEEECCChHH------HhhhhhHHH-hhccCCCceEEEcCHHHHHHHhc
Q 023557 170 GSKWLVLRFGMFNFEVIQAAIRIAKQE-GLSVSMDLASFEM------VRNFRTPLL-QLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~~~~~~~~a~~~-g~~v~~D~~~~~~------~~~~~~~l~-~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
+++++.+.+. .+.+....+.+.+++. +.++++||..... .+.+.+.+. .+++ .+|+++||..|++.|++
T Consensus 68 ~~~~i~~G~l-~~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~--~~dvitpN~~Ea~~L~g 144 (242)
T cd01169 68 PVDAIKIGML-GSAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLP--LATLITPNLPEAELLTG 144 (242)
T ss_pred CCCEEEECCC-CCHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhc--cCeEEeCCHHHHHHHhC
Confidence 5788888754 2577788888888776 8899999963210 011222232 3445 89999999999999998
Q ss_pred CCCCC--cHHHHHHHH-hcCCCEEEEEcCCCc-----eEEEeCC
Q 023557 242 GEENA--DSEAALEFL-AKRCQWAVVTLGPNG-----CIAKHGK 277 (280)
Q Consensus 242 ~~~~~--~~~~~~~~l-~~~~~~vvvT~G~~G-----a~~~~~~ 277 (280)
....+ +..++.+.+ +.+++.++||.|++| .++++++
T Consensus 145 ~~~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~~~~~~~~ 188 (242)
T cd01169 145 LEIATEEDMMKAAKALLALGAKAVLIKGGHLPGDEAVDVLYDGG 188 (242)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEEEEECC
Confidence 64321 233444544 568899999999986 3555554
No 56
>PRK07105 pyridoxamine kinase; Validated
Probab=98.30 E-value=5.1e-06 Score=71.93 Aligned_cols=104 Identities=15% Similarity=0.077 Sum_probs=69.4
Q ss_pred CCcEEEEEecCCCHHH---HHHHHHHHHHCCCeEEEECCChHH-------HhhhhhHHHhhccCCCceEEEcCHHHHHHH
Q 023557 170 GSKWLVLRFGMFNFEV---IQAAIRIAKQEGLSVSMDLASFEM-------VRNFRTPLLQLLESGDVDLCFANEDEAAEL 239 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~---~~~~~~~a~~~g~~v~~D~~~~~~-------~~~~~~~l~~~l~~~~~dil~~N~~E~~~l 239 (280)
..|.|++.+.. +++. +.++++.+++.+.++++||..... .+...+.+.++++ .+|+++||..|++.|
T Consensus 75 ~~~aik~G~l~-~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~--~advitpN~~Ea~~L 151 (284)
T PRK07105 75 KFDAIYSGYLG-SPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQ--KADVITPNLTEACLL 151 (284)
T ss_pred ccCEEEECcCC-CHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHh--hCCEecCCHHHHHHH
Confidence 67888888542 4443 444444446668899999963210 1122344566777 899999999999999
Q ss_pred hcCCCC------CcHHHHHHHH-hcCCCEEEEEc-----CCCceEEEeC
Q 023557 240 VRGEEN------ADSEAALEFL-AKRCQWAVVTL-----GPNGCIAKHG 276 (280)
Q Consensus 240 ~~~~~~------~~~~~~~~~l-~~~~~~vvvT~-----G~~Ga~~~~~ 276 (280)
++.... ++..++++.+ ..+++.++||. |..|++++++
T Consensus 152 ~g~~~~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~ 200 (284)
T PRK07105 152 LDKPYLEKSYSEEEIKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYDR 200 (284)
T ss_pred cCCCcCcCCCCHHHHHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEeC
Confidence 986421 1233444544 45889999999 7788888764
No 57
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=98.27 E-value=1.3e-05 Score=68.69 Aligned_cols=105 Identities=21% Similarity=0.161 Sum_probs=70.9
Q ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHCCC-eEEEECCChHH------HhhhhhHHH-hhccCCCceEEEcCHHHHHHHhc
Q 023557 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGL-SVSMDLASFEM------VRNFRTPLL-QLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~~~~~~~~a~~~g~-~v~~D~~~~~~------~~~~~~~l~-~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
+.+.+.+.+. -+.+.+..+++.+++.+. ++++||..... .+...+.+. ++++ .+|+++||..|++.|++
T Consensus 73 ~~~ai~iG~l-~~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~--~~dvitpN~~Ea~~L~g 149 (266)
T PRK06427 73 RIDAVKIGML-ASAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLP--LATLITPNLPEAEALTG 149 (266)
T ss_pred CCCEEEECCc-CCHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhC--cCeEEcCCHHHHHHHhC
Confidence 5688888854 267777788888888775 79999852210 011122333 3566 89999999999999998
Q ss_pred CCCCC--c-HHHHHHHH-hcCCCEEEEEcCC--Cce----EEEeCC
Q 023557 242 GEENA--D-SEAALEFL-AKRCQWAVVTLGP--NGC----IAKHGK 277 (280)
Q Consensus 242 ~~~~~--~-~~~~~~~l-~~~~~~vvvT~G~--~Ga----~~~~~~ 277 (280)
....+ + ..++++.+ +.+++.|+||.|. +|. ++++++
T Consensus 150 ~~~~~~~~~~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~~ 195 (266)
T PRK06427 150 LPIADTEDEMKAAARALHALGCKAVLIKGGHLLDGEESVDWLFDGE 195 (266)
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCceeEEEEeCC
Confidence 64222 1 44555544 4588999999998 564 555554
No 58
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=98.25 E-value=5e-06 Score=72.08 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=67.2
Q ss_pred ccCCCcEEEEEecC--CCHHHHHHHHHHHHHCC--CeEEEECC------ChHHHhhhhhHHH-hhccCCCceEEEcCHHH
Q 023557 167 DVKGSKWLVLRFGM--FNFEVIQAAIRIAKQEG--LSVSMDLA------SFEMVRNFRTPLL-QLLESGDVDLCFANEDE 235 (280)
Q Consensus 167 ~~~~~~~v~i~~~~--~~~~~~~~~~~~a~~~g--~~v~~D~~------~~~~~~~~~~~l~-~~l~~~~~dil~~N~~E 235 (280)
.+.++|++++.+.. ...+.+.++++.+++.+ ..+++||. .....+.+.+.+. ++++ .+|++++|..|
T Consensus 71 ~~~~~d~v~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~--~adii~pN~~E 148 (286)
T TIGR00687 71 KLNQCDAVLSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIP--VADIITPNQFE 148 (286)
T ss_pred ccccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccc--cccEecCCHHH
Confidence 34688998666532 12457788888887765 66889993 1100112333343 3555 89999999999
Q ss_pred HHHHhcCCCC--CcHHHHHHH-HhcCCCEEEEE-cCCCce
Q 023557 236 AAELVRGEEN--ADSEAALEF-LAKRCQWAVVT-LGPNGC 271 (280)
Q Consensus 236 ~~~l~~~~~~--~~~~~~~~~-l~~~~~~vvvT-~G~~Ga 271 (280)
++.+++.+.. ++..++++. ++.+++.++|| .|.+|+
T Consensus 149 a~~L~g~~~~~~~~~~~~~~~l~~~g~~~Viit~~g~~g~ 188 (286)
T TIGR00687 149 LELLTGRKINTVEEALAAADALIAMGPDIVLVTHLARAGS 188 (286)
T ss_pred HHHHhCCCcCCHHHHHHHHHHHHHhCCCEEEEEeccccCC
Confidence 9999986422 233344554 45688999999 788885
No 59
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=98.20 E-value=2.1e-05 Score=66.92 Aligned_cols=105 Identities=16% Similarity=0.091 Sum_probs=70.2
Q ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHCCC-eEEEECCChH-----HH-hhhhhHHH-hhccCCCceEEEcCHHHHHHHhc
Q 023557 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGL-SVSMDLASFE-----MV-RNFRTPLL-QLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~~~~~~~~a~~~g~-~v~~D~~~~~-----~~-~~~~~~l~-~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
+.+.+.+.+. .+.+.+..+++.+++.+. ++++||.... .. +...+.+. ++++ .+|+++||..|++.|++
T Consensus 67 ~~~aikiG~l-~~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~--~~dvitpN~~Ea~~L~g 143 (254)
T TIGR00097 67 PVDAAKTGML-ASAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLP--LATLITPNLPEAEALLG 143 (254)
T ss_pred CCCEEEECCc-CCHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhccc--cccEecCCHHHHHHHhC
Confidence 3577777743 367888888888888888 6999985321 00 01112233 3556 89999999999999998
Q ss_pred CCCC--CcHHHHHHHH-hcCCCEEEEEcCC----Cce-EEEeCC
Q 023557 242 GEEN--ADSEAALEFL-AKRCQWAVVTLGP----NGC-IAKHGK 277 (280)
Q Consensus 242 ~~~~--~~~~~~~~~l-~~~~~~vvvT~G~----~Ga-~~~~~~ 277 (280)
.... ++..++.+.+ +.+++.++||.|. +|. ++++++
T Consensus 144 ~~~~~~~~~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~~ 187 (254)
T TIGR00097 144 TKIRTEQDMIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDGG 187 (254)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEECC
Confidence 5422 2344555544 5688999999997 344 556554
No 60
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=98.20 E-value=1.4e-05 Score=67.94 Aligned_cols=162 Identities=19% Similarity=0.238 Sum_probs=86.6
Q ss_pred EEEEEeecCChhH-HHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEE
Q 023557 97 CGLIGAYGDDQQG-QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (280)
Q Consensus 97 ~~~~~~vG~D~~g-~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 175 (280)
...++.-|.|..| .-+...++-. . ........+.+++...+..|.. +.. -....+ .+.+ +.+...++..
T Consensus 4 ~~vl~iag~d~~ggaG~~aD~~~~--~--~~~~~~~~~~t~~t~~~~~G~~-v~~--~~~~~l-~~~l--~~l~~~~~~~ 73 (253)
T PRK12413 4 NYILAISGNDIFSGGGLHADLATY--T--RNGLHGFVAVTCLTAMTEKGFE-VFP--VDKEIF-QQQL--DSLKDVPFSA 73 (253)
T ss_pred CeEEEEeeeCCCCHHHHHHHHHHH--H--HcCCccCeeeEEEecccCCceE-EEE--CCHHHH-HHHH--HHhhCCCCCE
Confidence 3456666777654 3455544421 1 1111222455555555555532 211 111111 1111 1123444444
Q ss_pred EEecCC-CHHHHHHHHHHHH-HCCCeEEEECCChHH------HhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC--
Q 023557 176 LRFGMF-NFEVIQAAIRIAK-QEGLSVSMDLASFEM------VRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN-- 245 (280)
Q Consensus 176 i~~~~~-~~~~~~~~~~~a~-~~g~~v~~D~~~~~~------~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~-- 245 (280)
+....+ +.+....+++..+ ..+.++++||..... .+.+++.+.++++ .+|+++||++|++.++|....
T Consensus 74 i~~G~l~~~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~--~~dli~pN~~E~~~L~g~~~~~~ 151 (253)
T PRK12413 74 IKIGLLPNVEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFP--YVTVITPNLVEAELLSGKEIKTL 151 (253)
T ss_pred EEECCcCCHHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhc--cCcEECCCHHHHHHHhCcCCCCH
Confidence 442212 4455555565555 468899999853210 1123334445666 899999999999999986432
Q ss_pred CcHHHHHHHH-hcCCCEEEEEcCCCc
Q 023557 246 ADSEAALEFL-AKRCQWAVVTLGPNG 270 (280)
Q Consensus 246 ~~~~~~~~~l-~~~~~~vvvT~G~~G 270 (280)
++..++++.+ +.+++.|+||.|++|
T Consensus 152 ~~~~~~a~~l~~~g~~~Vvvt~g~~~ 177 (253)
T PRK12413 152 EDMKEAAKKLYDLGAKAVVIKGGNRL 177 (253)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 2344555544 568899999999874
No 61
>PRK05756 pyridoxamine kinase; Validated
Probab=98.17 E-value=1.3e-05 Score=69.50 Aligned_cols=109 Identities=17% Similarity=0.016 Sum_probs=69.6
Q ss_pred cCCCcEEEEEecC--CCHHHHHHHHHHHHHCC--CeEEEECCChH------HHhhhhhHHHh-hccCCCceEEEcCHHHH
Q 023557 168 VKGSKWLVLRFGM--FNFEVIQAAIRIAKQEG--LSVSMDLASFE------MVRNFRTPLLQ-LLESGDVDLCFANEDEA 236 (280)
Q Consensus 168 ~~~~~~v~i~~~~--~~~~~~~~~~~~a~~~g--~~v~~D~~~~~------~~~~~~~~l~~-~l~~~~~dil~~N~~E~ 236 (280)
+..++++...+.. ...+.+.++++.+++.+ ..+++||.-.. ..+...+.+.+ +++ .+|+++||..|+
T Consensus 72 l~~~~~v~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~--~adiitpN~~Ea 149 (286)
T PRK05756 72 LGECDAVLSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALP--AADIITPNLFEL 149 (286)
T ss_pred cccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcc--cccEecCCHHHH
Confidence 4578877666432 13467788888877665 45888974221 00111122332 565 899999999999
Q ss_pred HHHhcCCCC--CcHHHHHHHH-hcCCCEEEEEcCCC--------ceEEEeCCc
Q 023557 237 AELVRGEEN--ADSEAALEFL-AKRCQWAVVTLGPN--------GCIAKHGKE 278 (280)
Q Consensus 237 ~~l~~~~~~--~~~~~~~~~l-~~~~~~vvvT~G~~--------Ga~~~~~~~ 278 (280)
+.|++.... ++..++++.+ ..+++.++||.|.. |++++++++
T Consensus 150 ~~L~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~ 202 (286)
T PRK05756 150 EWLSGRPVETLEDAVAAARALIARGPKIVLVTSLARAGYPADRFEMLLVTADG 202 (286)
T ss_pred HHHhCCCcCCHHHHHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEEECCc
Confidence 999986422 2333445444 56889999999986 476766654
No 62
>PRK12616 pyridoxal kinase; Reviewed
Probab=98.15 E-value=2e-05 Score=67.73 Aligned_cols=98 Identities=18% Similarity=0.112 Sum_probs=66.4
Q ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHCC-CeEEEECCChH------HHhhhhhHHHh-hccCCCceEEEcCHHHHHHHhc
Q 023557 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEG-LSVSMDLASFE------MVRNFRTPLLQ-LLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~~~~~~~~a~~~g-~~v~~D~~~~~------~~~~~~~~l~~-~l~~~~~dil~~N~~E~~~l~~ 241 (280)
..+.+.+.+. -+.+.+..+.+..++.+ .++++||.... ..+.+.+.+.+ +++ .+|+++||..|++.|++
T Consensus 74 ~~~aikiG~l-~s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~--~advitpN~~Ea~~L~g 150 (270)
T PRK12616 74 GVDAMKTGML-PTVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAP--LATVITPNLFEAGQLSG 150 (270)
T ss_pred CCCEEEECCC-CCHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhc--cceEecCCHHHHHHHcC
Confidence 4678888853 26777777888887776 46999996421 01112233444 554 89999999999999988
Q ss_pred C-CCC--CcHHHHHHHH-hcCCCEEEEEcCCCc
Q 023557 242 G-EEN--ADSEAALEFL-AKRCQWAVVTLGPNG 270 (280)
Q Consensus 242 ~-~~~--~~~~~~~~~l-~~~~~~vvvT~G~~G 270 (280)
. ... ++..++++.+ +.+++.++||.|.+|
T Consensus 151 ~~~~~~~~~~~~aa~~l~~~G~~~VvVt~G~~g 183 (270)
T PRK12616 151 MGEIKTVEQMKEAAKKIHELGAQYVVITGGGKL 183 (270)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 5 211 2344555544 568899999999886
No 63
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=98.05 E-value=3.9e-05 Score=65.26 Aligned_cols=106 Identities=15% Similarity=0.054 Sum_probs=67.3
Q ss_pred ccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCC
Q 023557 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENA 246 (280)
Q Consensus 167 ~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~ 246 (280)
.+.+.|+++++.++-..+....+++.+++.+.++++|+.+....... ... .+.+ .+++++||..|+..|++....+
T Consensus 74 ~~~~~d~v~ig~gl~~~~~~~~i~~~~~~~~~pvVlDa~~~~~~~~~-~~~-~~~~--~~~iltPn~~E~~~L~g~~~~~ 149 (254)
T cd01171 74 LLERADAVVIGPGLGRDEEAAEILEKALAKDKPLVLDADALNLLADE-PSL-IKRY--GPVVLTPHPGEFARLLGALVEE 149 (254)
T ss_pred hhccCCEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEcHHHHHhhcC-hhh-hccC--CCEEECCCHHHHHHHhCCChhh
Confidence 45678999999543233778888888888899999999754221111 111 1233 7899999999999999864211
Q ss_pred ---cHHHHHHHHhcCCCEEEEEcCCCceEEEeCC
Q 023557 247 ---DSEAALEFLAKRCQWAVVTLGPNGCIAKHGK 277 (280)
Q Consensus 247 ---~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~~ 277 (280)
+..++.+.+.+....++|+.|. +.++++++
T Consensus 150 ~~~~~~~~a~~l~~~~~~~vvlkG~-~~~i~~~~ 182 (254)
T cd01171 150 IQADRLAAAREAAAKLGATVVLKGA-VTVIADPD 182 (254)
T ss_pred hhhHHHHHHHHHHHHcCcEEEEcCC-CCEEECCC
Confidence 2233444443323455666684 56666553
No 64
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=97.97 E-value=6.9e-05 Score=63.30 Aligned_cols=110 Identities=24% Similarity=0.174 Sum_probs=67.9
Q ss_pred ccccCCCcEEEEEecCCC---HHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCC-CceEEEcCHHHHHHHh
Q 023557 165 AEDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESG-DVDLCFANEDEAAELV 240 (280)
Q Consensus 165 ~~~~~~~~~v~i~~~~~~---~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~-~~dil~~N~~E~~~l~ 240 (280)
.+.++++|++++..++.. .+.+..+++.+++.++++++|+..........+.+.+++. . .+|+++||..|+..|+
T Consensus 44 ~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~~~~~~~~~~ll~-~~~~~ilTPN~~Ea~~L~ 122 (242)
T cd01170 44 EELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGATSFRTEVAKELLA-EGQPTVIRGNASEIAALA 122 (242)
T ss_pred HHHHHHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEcccccCcchhHHHHHHHHHh-cCCCeEEcCCHHHHHHHh
Confidence 356788999999944333 2445555666788899999999632100011122234444 1 3899999999999999
Q ss_pred cCCC-----------CCcHHHHHHHH-hcCCCEEEEEcCCCceEEEeCC
Q 023557 241 RGEE-----------NADSEAALEFL-AKRCQWAVVTLGPNGCIAKHGK 277 (280)
Q Consensus 241 ~~~~-----------~~~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~ 277 (280)
+... .++..++++.+ +++...|++| |.... +++++
T Consensus 123 g~~~~~~~~~~~~~~~~~~~~aa~~l~~~~~~~Vllk-G~~d~-l~~~~ 169 (242)
T cd01170 123 GLTGLGKGVDSSSSDEEDALELAKALARKYGAVVVVT-GEVDY-ITDGE 169 (242)
T ss_pred CCCCCcCcccCCCcchHHHHHHHHHHHHHhCCEEEEE-CCCcE-EEECC
Confidence 8642 12334444444 4455578898 77664 44444
No 65
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=97.81 E-value=0.00012 Score=67.45 Aligned_cols=94 Identities=19% Similarity=0.220 Sum_probs=63.9
Q ss_pred cEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChH-----HH-hhhhhHH-HhhccCCCceEEEcCHHHHHHHhcCCC
Q 023557 172 KWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE-----MV-RNFRTPL-LQLLESGDVDLCFANEDEAAELVRGEE 244 (280)
Q Consensus 172 ~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~-~~~~~~l-~~~l~~~~~dil~~N~~E~~~l~~~~~ 244 (280)
+++.+++ +.+.+.+..+++.+++.+.++++||.... .. +...+.+ .++++ .+|+++||..|++.|+|...
T Consensus 73 ~~ik~G~-l~~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp--~adli~pN~~Ea~~L~g~~i 149 (448)
T PRK08573 73 DAAKTGM-LSNREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLLP--LATVVTPNRPEAEKLTGMKI 149 (448)
T ss_pred CEEEECC-cCCHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhc--cCEEEcCCHHHHHHHhCCCC
Confidence 4444443 23678889999999999999999985221 00 0111223 34566 89999999999999998642
Q ss_pred C--CcHHHHHHHHh--cCCCEEEEEcCC
Q 023557 245 N--ADSEAALEFLA--KRCQWAVVTLGP 268 (280)
Q Consensus 245 ~--~~~~~~~~~l~--~~~~~vvvT~G~ 268 (280)
. ++..++++.+. .+++.|+||.|.
T Consensus 150 ~~~~d~~~aa~~L~~~~G~~~VvVt~G~ 177 (448)
T PRK08573 150 RSVEDARKAAKYIVEELGAEAVVVKGGH 177 (448)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 2 23445566553 588999999985
No 66
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=97.74 E-value=0.00016 Score=61.32 Aligned_cols=96 Identities=22% Similarity=0.123 Sum_probs=59.2
Q ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh-----H-HHhhhhhHHHh-hccCCCceEEEcCHHHHHHHhcC
Q 023557 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF-----E-MVRNFRTPLLQ-LLESGDVDLCFANEDEAAELVRG 242 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~-----~-~~~~~~~~l~~-~l~~~~~dil~~N~~E~~~l~~~ 242 (280)
..+.+.+.+.. +.+.+..+.+..++.+.++++||--. . ..+...+.+.+ +++ .+|+++||..|++.|++.
T Consensus 60 ~~~aikiG~l~-~~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp--~AdiitPN~~Ea~~L~g~ 136 (246)
T PF08543_consen 60 KFDAIKIGYLG-SAEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLP--LADIITPNLTEAELLTGR 136 (246)
T ss_dssp C-SEEEE-S-S-SHHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGG--G-SEEE-BHHHHHHHHTS
T ss_pred cccEEEEcccC-CchhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCC--cCeEEeCCHHHHHHHhCC
Confidence 67899988642 66666666666677788999999311 0 11223344444 666 899999999999999995
Q ss_pred CCC--CcHHHHHHHH-hcCCCEEEEEcCC
Q 023557 243 EEN--ADSEAALEFL-AKRCQWAVVTLGP 268 (280)
Q Consensus 243 ~~~--~~~~~~~~~l-~~~~~~vvvT~G~ 268 (280)
... +++.++++.+ +.|++.|+||-+.
T Consensus 137 ~i~~~~~~~~~~~~l~~~G~~~VvItg~~ 165 (246)
T PF08543_consen 137 EINSEEDIEEAAKALLALGPKNVVITGGH 165 (246)
T ss_dssp --SSHHHHHHHHHHHHHTS-SEEEEEEEE
T ss_pred CCCChHhHHHHHHHHHHhCCceEEEeeec
Confidence 432 2344555544 5689999999887
No 67
>PTZ00344 pyridoxal kinase; Provisional
Probab=97.65 E-value=0.00057 Score=59.57 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=60.4
Q ss_pred CCcEEEEEecCCCHHHHHHHHHHH---HHCC--CeEEEECCChH-----HHhhhhhHHHhhccCCCceEEEcCHHHHHHH
Q 023557 170 GSKWLVLRFGMFNFEVIQAAIRIA---KQEG--LSVSMDLASFE-----MVRNFRTPLLQLLESGDVDLCFANEDEAAEL 239 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~~~~~~~~a---~~~g--~~v~~D~~~~~-----~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l 239 (280)
+.+++...+.. +.+.+..+++.. ++.+ .++++||.-.. ..+...+.+.++++ .+|++++|.+|++.+
T Consensus 77 ~~~~v~sG~l~-~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~ll~--~~dii~pN~~E~~~L 153 (296)
T PTZ00344 77 DYTYVLTGYIN-SADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRELIP--YADVITPNQFEASLL 153 (296)
T ss_pred cCCEEEECCCC-CHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHHHhh--hCCEEeCCHHHHHHH
Confidence 34666666432 455554444444 4454 47999954210 11233444566776 899999999999999
Q ss_pred hcCCCC--CcHHHHHHHH-hcCCCEEEEE---cCCCc
Q 023557 240 VRGEEN--ADSEAALEFL-AKRCQWAVVT---LGPNG 270 (280)
Q Consensus 240 ~~~~~~--~~~~~~~~~l-~~~~~~vvvT---~G~~G 270 (280)
+|.... ++..++++.+ +.+++.|+|| .|..|
T Consensus 154 ~g~~~~~~~~~~~~~~~l~~~g~~~VvVTg~~~~~~g 190 (296)
T PTZ00344 154 SGVEVKDLSDALEAIDWFHEQGIPVVVITSFREDEDP 190 (296)
T ss_pred hCCCCCCHHHHHHHHHHHHHhCCCEEEEEeecCCCCC
Confidence 986422 1233455544 4588999999 66666
No 68
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=97.47 E-value=0.00055 Score=57.73 Aligned_cols=97 Identities=18% Similarity=0.092 Sum_probs=64.5
Q ss_pred CcEEEEEecCCCHHHHHHHHHHHHHCC-CeEEEECC-----ChH-HHhhhhhHHH-hhccCCCceEEEcCHHHHHHHhcC
Q 023557 171 SKWLVLRFGMFNFEVIQAAIRIAKQEG-LSVSMDLA-----SFE-MVRNFRTPLL-QLLESGDVDLCFANEDEAAELVRG 242 (280)
Q Consensus 171 ~~~v~i~~~~~~~~~~~~~~~~a~~~g-~~v~~D~~-----~~~-~~~~~~~~l~-~~l~~~~~dil~~N~~E~~~l~~~ 242 (280)
++++=+.. +.+.+.+..+.+..++.+ .++++||- +.. ..+...+.+. ++++ .+++++||..|++.|.|.
T Consensus 73 v~avKtGM-L~~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP--~a~vvTPNl~EA~~L~g~ 149 (263)
T COG0351 73 VDAVKTGM-LGSAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLP--LATVVTPNLPEAEALSGL 149 (263)
T ss_pred CCEEEECC-cCCHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhc--cCeEecCCHHHHHHHcCC
Confidence 34444442 136788888888888888 77999992 221 1122333343 5666 999999999999999995
Q ss_pred -CC--CCcHHHHHHHH-hcCCCEEEEEcCCCc
Q 023557 243 -EE--NADSEAALEFL-AKRCQWAVVTLGPNG 270 (280)
Q Consensus 243 -~~--~~~~~~~~~~l-~~~~~~vvvT~G~~G 270 (280)
.. .++..++.+.+ +.|++.|+||-|...
T Consensus 150 ~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~ 181 (263)
T COG0351 150 PKIKTEEDMKEAAKLLHELGAKAVLIKGGHLE 181 (263)
T ss_pred CccCCHHHHHHHHHHHHHhCCCEEEEcCCCCC
Confidence 32 23444555555 569999999987644
No 69
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=97.42 E-value=0.0014 Score=61.45 Aligned_cols=98 Identities=17% Similarity=0.118 Sum_probs=64.2
Q ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHCCCe-EEEECCChH------HHhhhhhHHH-hhccCCCceEEEcCHHHHHHHhc
Q 023557 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLS-VSMDLASFE------MVRNFRTPLL-QLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~------~~~~~~~~l~-~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
..+.+.+.+. -+.+.+..+++..++.+.+ +++||.-.. ..+...+.+. ++++ .+|+++||..|++.|++
T Consensus 78 ~~~aik~G~l-~~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~--~adiitPN~~Ea~~L~g 154 (502)
T PLN02898 78 PVDVVKTGML-PSAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLP--LATIVTPNVKEASALLG 154 (502)
T ss_pred CCCEEEECCc-CCHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhc--cCeEEcCCHHHHHHHhC
Confidence 3566766643 2677788888888887775 999994210 0011222333 4555 89999999999999987
Q ss_pred CCCC---CcHHHHHHHH-hcCCCEEEEEcCCCc
Q 023557 242 GEEN---ADSEAALEFL-AKRCQWAVVTLGPNG 270 (280)
Q Consensus 242 ~~~~---~~~~~~~~~l-~~~~~~vvvT~G~~G 270 (280)
.... ++..++++.+ +.+++.|+||.|..+
T Consensus 155 ~~~~~~~~~~~~~a~~l~~~G~~~VvItgg~~~ 187 (502)
T PLN02898 155 GDPLETVADMRSAAKELHKLGPRYVLVKGGHLP 187 (502)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 4321 2344455544 458899999999863
No 70
>PLN02978 pyridoxal kinase
Probab=97.41 E-value=0.0014 Score=57.52 Aligned_cols=96 Identities=14% Similarity=0.034 Sum_probs=60.8
Q ss_pred CcEEEEEecC--CCHHHHHHHHHHHHH--CCCeEEEECCChH-----HHhhhhhHHH-hhccCCCceEEEcCHHHHHHHh
Q 023557 171 SKWLVLRFGM--FNFEVIQAAIRIAKQ--EGLSVSMDLASFE-----MVRNFRTPLL-QLLESGDVDLCFANEDEAAELV 240 (280)
Q Consensus 171 ~~~v~i~~~~--~~~~~~~~~~~~a~~--~g~~v~~D~~~~~-----~~~~~~~~l~-~~l~~~~~dil~~N~~E~~~l~ 240 (280)
++.+.+.+.. -..+.+.++++.+++ .+..+++||.... ..+...+.+. ++++ .+|+++||..|++.++
T Consensus 87 ~~ai~~G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~--~adiitPN~~Ea~~L~ 164 (308)
T PLN02978 87 YTHLLTGYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVP--LATMLTPNQFEAEQLT 164 (308)
T ss_pred cCEEEecccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHh--hCCeeccCHHHHHHHh
Confidence 6788777432 124566777777776 4467889996321 0111222343 3666 8999999999999999
Q ss_pred cCCCCC--cHHHHHHHH-hcCCCEEEEEcCC
Q 023557 241 RGEENA--DSEAALEFL-AKRCQWAVVTLGP 268 (280)
Q Consensus 241 ~~~~~~--~~~~~~~~l-~~~~~~vvvT~G~ 268 (280)
|....+ +..++++.+ ..+++.||||-+.
T Consensus 165 g~~~~~~~~~~~a~~~l~~~g~~~VVITs~~ 195 (308)
T PLN02978 165 GIRIVTEEDAREACAILHAAGPSKVVITSID 195 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCEEEEEEec
Confidence 864221 333455444 4588999998754
No 71
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=97.39 E-value=0.028 Score=51.31 Aligned_cols=162 Identities=17% Similarity=0.111 Sum_probs=86.6
Q ss_pred CceeecCchHHHHHHHHHhhcCCcEEE-EEeecCChhHHHHHHHHHhCCCcccee-----ee--------CCCCceeEEE
Q 023557 73 PIKTIAGGSVTNTIRGLSVGFGVPCGL-IGAYGDDQQGQLFVSNMQFSGVDVSRL-----RM--------KRGPTGQCVC 138 (280)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~~lG~~~~~-~~~vG~D~~g~~i~~~L~~~gV~~~~v-----~~--------~~~~T~~~~~ 138 (280)
....+.||.+.-.|..+++ +|.++.+ .+..- ++..++.|...+|-.-.+ .. ...+.-..++
T Consensus 85 ~~~~rmGGnAgimAn~la~-lg~~~Vi~~~~~l----sk~q~~lf~~~~i~~p~~~~~~~l~~~~~~~a~~~~~d~IH~I 159 (453)
T PRK14039 85 NSEIRMGGNAGIMANVLSE-LGASRVVPNVAVP----SKTQLSLFSKKAVYFPGMPLQASETDGEKVGASSSDQEPIHFV 159 (453)
T ss_pred CceEEeCChHHHHHHHHHh-cCCceEEEcCCCC----CHHHHHhcCCCCEEeccccccccccCccccccccCCCCCceEE
Confidence 5679999999999999996 9999655 33222 244445552222221110 00 0001222222
Q ss_pred ---------------EEcCCCceeeeecCCcCCCCCc-ccCc---ccccCCCcEEEEE-ecCC-C--------HHHH---
Q 023557 139 ---------------LVDASGNRTMRPCLSNAVKIQA-DELI---AEDVKGSKWLVLR-FGMF-N--------FEVI--- 186 (280)
Q Consensus 139 ---------------~~~~~g~r~~~~~~~~~~~~~~-~~l~---~~~~~~~~~v~i~-~~~~-~--------~~~~--- 186 (280)
++.|.-+|-++.+...+..+.. +++. .+...++|.++++ +.++ . .+.+
T Consensus 160 fEy~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~l~i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l~~~ 239 (453)
T PRK14039 160 FDFREGETFSLYGTRIRAPRENRFIATFDHLNFRLFINPAFEQYALEHAGEMDGALISGFHLLLETYPDGSTYREKLEDS 239 (453)
T ss_pred EEeCCCCEEecCCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHHHHH
Confidence 2333444555544333333322 2221 1233478999999 4433 1 1222
Q ss_pred HHHHHHHH--HCCCeEEEECCChHHHhhhhhHHH-hhccCCCceEEEcCHHHHHHHhcC
Q 023557 187 QAAIRIAK--QEGLSVSMDLASFEMVRNFRTPLL-QLLESGDVDLCFANEDEAAELVRG 242 (280)
Q Consensus 187 ~~~~~~a~--~~g~~v~~D~~~~~~~~~~~~~l~-~~l~~~~~dil~~N~~E~~~l~~~ 242 (280)
.+.++..+ ..+.++-+.+++..-. ..+..+. .+++ .+|.+=+|++|+..+...
T Consensus 240 ~~~i~~l~~~~~~i~iH~E~As~~~~-~i~~~v~~~Ilp--~VDSlGmNEqELa~l~~~ 295 (453)
T PRK14039 240 LAQLKWWKSKNEKLRIHAELGHFASK-EIANSVFLILAG--IVDSIGMNEDELAMLANL 295 (453)
T ss_pred HHHHHHHHhcCCCceEEEEecCcccH-HHHHHHHHHhhc--ccccccCCHHHHHHHHHH
Confidence 22333322 2357899998765322 3344444 4565 999999999999887654
No 72
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=97.31 E-value=0.0027 Score=59.59 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=61.0
Q ss_pred ccCCCcE--EEEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh-----HHHhh-----hhhHHH-hhccCCCceEEEcCH
Q 023557 167 DVKGSKW--LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF-----EMVRN-----FRTPLL-QLLESGDVDLCFANE 233 (280)
Q Consensus 167 ~~~~~~~--v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~-----~~~~~-----~~~~l~-~~l~~~~~dil~~N~ 233 (280)
.+++.++ +.+++. -+.+.+..+++..+ +.++++||... ..... ..+.+. ++++ .+|+++||.
T Consensus 294 l~~d~~~~~Ik~G~l-~s~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~--~advitPN~ 368 (504)
T PTZ00347 294 VMSDFNISVVKLGLV-PTARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFP--MATIITPNI 368 (504)
T ss_pred HHhCCCCCEEEECCc-CCHHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccC--cceEEeCCH
Confidence 3444444 444432 35777777777664 57899997431 11100 011222 3556 899999999
Q ss_pred HHHHHHhcCCCCC---cHHHHHHHH-hcCCCEEEEEcCCCc
Q 023557 234 DEAAELVRGEENA---DSEAALEFL-AKRCQWAVVTLGPNG 270 (280)
Q Consensus 234 ~E~~~l~~~~~~~---~~~~~~~~l-~~~~~~vvvT~G~~G 270 (280)
.|++.|+|..... +..++++.+ +.+++.|+||.|..|
T Consensus 369 ~Ea~~L~g~~~~~~~~~~~~aa~~l~~~G~~~VvVtgg~~~ 409 (504)
T PTZ00347 369 PEAERILGRKEITGVYEARAAAQALAQYGSRYVLVKGGHDL 409 (504)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 9999999863112 334455544 458899999999963
No 73
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=97.28 E-value=0.0017 Score=55.18 Aligned_cols=109 Identities=28% Similarity=0.307 Sum_probs=63.9
Q ss_pred cccCCCcEEEEEecCCC---HHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhH-HHhhccCCCceEEEcCHHHHHHHhc
Q 023557 166 EDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTP-LLQLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 166 ~~~~~~~~v~i~~~~~~---~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~-l~~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
+..+.++.+++..++.. .+.+..+++.+++.++++++||...... .++.. ..++++...+++|+||..|+..|++
T Consensus 45 ~~~~~~~al~ik~G~l~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s-~~r~~~~~~Ll~~~~~~vITpN~~E~~~L~g 123 (249)
T TIGR00694 45 ELAKIAGALVINIGTLDKESIEAMIAAGKSANELGVPVVLDPVGVGAT-KFRTETALELLSEGRFAAIRGNAGEIASLAG 123 (249)
T ss_pred HHHHHcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEEcccccccc-hhHHHHHHHHHhhcCCceeCCCHHHHHHHhC
Confidence 45678899999944333 3445566666778899999999643211 11111 2334431147999999999999988
Q ss_pred CCC----------CCcHHHHHHHH-hcCCCEEEEEcCCCceEEEeCC
Q 023557 242 GEE----------NADSEAALEFL-AKRCQWAVVTLGPNGCIAKHGK 277 (280)
Q Consensus 242 ~~~----------~~~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~ 277 (280)
... .++..++++.+ +++...|++| |..- ++++++
T Consensus 124 ~~~~~~gvd~~~~~~d~~~~a~~la~~~~~~Vllk-G~~D-~i~~~~ 168 (249)
T TIGR00694 124 ETGLMKGVDSGEGAADAIRAAQQAAQKYGTVVVIT-GEVD-YVSDGT 168 (249)
T ss_pred CCCCCCCcCCccchHHHHHHHHHHHHHhCCEEEEE-CCCc-EEEeCC
Confidence 531 11233344444 3444477776 5432 344443
No 74
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=97.22 E-value=0.003 Score=54.08 Aligned_cols=100 Identities=28% Similarity=0.254 Sum_probs=60.5
Q ss_pred cccCCCcEEEEEecCCCHHH---HHHHHHHHHHCCCeEEEECCChHHHhhhhhHH-HhhccCCCceEEEcCHHHHHHHhc
Q 023557 166 EDVKGSKWLVLRFGMFNFEV---IQAAIRIAKQEGLSVSMDLASFEMVRNFRTPL-LQLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 166 ~~~~~~~~v~i~~~~~~~~~---~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l-~~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
+.++.++.+++..++...+. +..+++.+++.++++++||...... .++.++ .++++...+++|+||..|+..|++
T Consensus 50 ~~~~~~~alvi~~G~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~-~~~~~~~~~ll~~~~~~vItPN~~E~~~L~g 128 (263)
T PRK09355 50 EMAKIAGALVINIGTLTEERIEAMLAAGKIANEAGKPVVLDPVGVGAT-SYRTEFALELLAEVKPAVIRGNASEIAALAG 128 (263)
T ss_pred HHHHhcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEECCcccCcc-hhhHHHHHHHHHhcCCcEecCCHHHHHHHhC
Confidence 46678899999944434333 4555566788899999999643211 223322 223321257999999999999988
Q ss_pred CCC----------CCcHHHHHHHH-hcCCCEEEEEc
Q 023557 242 GEE----------NADSEAALEFL-AKRCQWAVVTL 266 (280)
Q Consensus 242 ~~~----------~~~~~~~~~~l-~~~~~~vvvT~ 266 (280)
... ..+..++.+.+ +++...+++|-
T Consensus 129 ~~~~~~~vd~~~~~~~~~~~a~~la~~~~~~VvvkG 164 (263)
T PRK09355 129 EAAETKGVDSTDGSADAVEIAKAAAKKYGTVVVVTG 164 (263)
T ss_pred CCcccCCcCCCCCHHHHHHHHHHHHHHhCCEEEEEC
Confidence 531 01333444444 44455677663
No 75
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=97.07 E-value=0.0031 Score=61.91 Aligned_cols=103 Identities=14% Similarity=0.069 Sum_probs=65.5
Q ss_pred CcEEEEEecCCCHHHHHHHHHHHHHC-CCeEEEECCChH-----H-HhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCC
Q 023557 171 SKWLVLRFGMFNFEVIQAAIRIAKQE-GLSVSMDLASFE-----M-VRNFRTPLLQLLESGDVDLCFANEDEAAELVRGE 243 (280)
Q Consensus 171 ~~~v~i~~~~~~~~~~~~~~~~a~~~-g~~v~~D~~~~~-----~-~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~ 243 (280)
.+.+-+.+. .+.+.+..+++..++. +.++++||.-.. . .+...+.+.++++ .+|+|+||..|+..|+|..
T Consensus 311 ~~aiKiGmL-~s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Llp--~adlItPN~~Ea~~L~g~~ 387 (755)
T PRK09517 311 VDAVKLGML-GSADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLLDADATEALRRLAV--HVDVVTPNIPELAVLCGEA 387 (755)
T ss_pred CCEEEECCC-CCHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCCCHHHHHHHHHHhC--cccCccCCHHHHHHHhCCC
Confidence 566767642 2567777788887774 567999984221 0 0112233556776 8999999999999999853
Q ss_pred CC---CcHHHHHHHH-hcCCCEEEEEcC------CCceEEEeC
Q 023557 244 EN---ADSEAALEFL-AKRCQWAVVTLG------PNGCIAKHG 276 (280)
Q Consensus 244 ~~---~~~~~~~~~l-~~~~~~vvvT~G------~~Ga~~~~~ 276 (280)
.. ++..++++.+ +.+...||||.| ..|+++..+
T Consensus 388 ~~~~~~d~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~~ 430 (755)
T PRK09517 388 PAITMDEAIAQARGFARTHGTIVIVKGGHLTGDLADNAVVRPD 430 (755)
T ss_pred CCCCHHHHHHHHHHHHHhcCCEEEEcCCcCCCCccceEEEeCC
Confidence 11 2333444444 444458999999 356665543
No 76
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=97.01 E-value=0.0055 Score=51.54 Aligned_cols=77 Identities=26% Similarity=0.340 Sum_probs=52.1
Q ss_pred cccCCCcEEEEEecCCC---HHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhH-HHhhccCCCceEEEcCHHHHHHHhc
Q 023557 166 EDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTP-LLQLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 166 ~~~~~~~~v~i~~~~~~---~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~-l~~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
+..+.++.++++.+..+ .+.+...++.+++.++++++||-+.... .+|.+ ..+++....+++|+.|..|...|.+
T Consensus 45 e~~~~a~al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas-~~R~~~~~~LL~~~~~~vIrGN~sEI~aLag 123 (246)
T PF02110_consen 45 EFASIADALVINIGTLTDERIEAMKKAAKAANELGIPVVLDPVGVGAS-KFRTEFALELLNNYKPTVIRGNASEIAALAG 123 (246)
T ss_dssp HHHHCTSEEEEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTTB-HHHHHHHHHHHCHS--SEEEEEHHHHHHHHT
T ss_pred HHHHHcCEEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCCc-HHHHHHHHHHHHhCCCcEEEeCHHHHHHHhC
Confidence 45677899999943333 4678888899999999999999655322 33433 4455532379999999999999988
Q ss_pred CC
Q 023557 242 GE 243 (280)
Q Consensus 242 ~~ 243 (280)
..
T Consensus 124 ~~ 125 (246)
T PF02110_consen 124 ED 125 (246)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 77
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=96.93 E-value=0.0039 Score=53.05 Aligned_cols=102 Identities=16% Similarity=0.041 Sum_probs=64.0
Q ss_pred cccCCCcEEEEEecCCC--HHHHHHHHHHHHHCCC--eEEEECC--Ch---HHHhhhhhHHH-hhccCCCceEEEcCHHH
Q 023557 166 EDVKGSKWLVLRFGMFN--FEVIQAAIRIAKQEGL--SVSMDLA--SF---EMVRNFRTPLL-QLLESGDVDLCFANEDE 235 (280)
Q Consensus 166 ~~~~~~~~v~i~~~~~~--~~~~~~~~~~a~~~g~--~v~~D~~--~~---~~~~~~~~~l~-~~l~~~~~dil~~N~~E 235 (280)
..+.++|.|+..|.... -..+..+++..|+.+. .+++||- .. ...+...+.+. ++++ .+|+++||.-|
T Consensus 69 ~~~~~~davltGYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip--~AdiiTPN~fE 146 (281)
T COG2240 69 DKLGECDAVLTGYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLP--LADIITPNIFE 146 (281)
T ss_pred ccccccCEEEEccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcc--hhhEeCCCHHH
Confidence 46788999988864311 3455666666666644 4888982 11 11111122222 4666 89999999999
Q ss_pred HHHHhcCCCC--CcHHHHHHHH-hcCCCEEEEEcCCC
Q 023557 236 AAELVRGEEN--ADSEAALEFL-AKRCQWAVVTLGPN 269 (280)
Q Consensus 236 ~~~l~~~~~~--~~~~~~~~~l-~~~~~~vvvT~G~~ 269 (280)
++.|+|.... +++.++++.| +.+.+.++||.=..
T Consensus 147 Le~Ltg~~~~~~~da~~aa~~L~~~gp~~vlVTS~~~ 183 (281)
T COG2240 147 LEILTGKPLNTLDDAVKAARKLGADGPKIVLVTSLSR 183 (281)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCCCEEEEecccc
Confidence 9999987532 2344445544 45889999996544
No 78
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=96.83 E-value=0.0089 Score=56.43 Aligned_cols=97 Identities=20% Similarity=0.100 Sum_probs=58.9
Q ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHC-CCeEEEECCCh-----H-HHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcC
Q 023557 170 GSKWLVLRFGMFNFEVIQAAIRIAKQE-GLSVSMDLASF-----E-MVRNFRTPLLQLLESGDVDLCFANEDEAAELVRG 242 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~~~~~~~~a~~~-g~~v~~D~~~~-----~-~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~ 242 (280)
..+.+.+.+. -+.+....+.+..++. +.+|++||.-. . ..+...+.+.++++ .+|+|+||..|++.|+|.
T Consensus 98 ~~~aikiG~l-~s~~~i~~v~~~l~~~~~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll~--~advItPN~~Ea~~Ltg~ 174 (530)
T PRK14713 98 TVDAVKIGML-GDAEVIDAVRTWLAEHRPPVVVLDPVMVATSGDRLLEEDAEAALRELVP--RADLITPNLPELAVLLGE 174 (530)
T ss_pred CCCEEEECCc-CCHHHHHHHHHHHHhCCCCCEEECCcccCCCCCCCCCHHHHHHHHHHhh--hhheecCChHHHHHHhCC
Confidence 3567777732 1444444444444443 34689999521 1 11223344556777 899999999999999986
Q ss_pred CCC---CcHHHHHHHH-hcCCCEEEEEcCCC
Q 023557 243 EEN---ADSEAALEFL-AKRCQWAVVTLGPN 269 (280)
Q Consensus 243 ~~~---~~~~~~~~~l-~~~~~~vvvT~G~~ 269 (280)
... ++..++++.+ ..+...||||.|..
T Consensus 175 ~~~~~~~d~~~aa~~L~~~~g~~VvItgG~~ 205 (530)
T PRK14713 175 PPATTWEEALAQARRLAAETGTTVLVKGGHL 205 (530)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 421 2233344545 34557899998864
No 79
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=96.66 E-value=0.019 Score=48.17 Aligned_cols=77 Identities=26% Similarity=0.267 Sum_probs=55.4
Q ss_pred cccCCCcEEEEE-ecCCC--HHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhH-HHhhccCCCceEEEcCHHHHHHHhc
Q 023557 166 EDVKGSKWLVLR-FGMFN--FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTP-LLQLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 166 ~~~~~~~~v~i~-~~~~~--~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~-l~~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
+..+-++.++++ .-+.. .+.+..+++.+++.++++++||-+.... .+|.+ ..++|.+.++++|+.|..|...|.+
T Consensus 51 e~~kia~AL~INIGTL~~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt-~~R~~~~~~LL~~~~~~~IrGN~sEI~~Lag 129 (265)
T COG2145 51 EFAKIADALLINIGTLSAERIQAMRAAIKAANESGKPVVLDPVGVGAT-KFRTKFALELLAEVKPAAIRGNASEIAALAG 129 (265)
T ss_pred HHHHhccceEEeeccCChHHHHHHHHHHHHHHhcCCCEEecCccCCch-HHHHHHHHHHHHhcCCcEEeccHHHHHHHhc
Confidence 456677889999 22222 5778888999999999999999654322 23433 3445553359999999999999986
Q ss_pred CC
Q 023557 242 GE 243 (280)
Q Consensus 242 ~~ 243 (280)
..
T Consensus 130 ~~ 131 (265)
T COG2145 130 EA 131 (265)
T ss_pred cc
Confidence 54
No 80
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=96.48 E-value=0.25 Score=45.39 Aligned_cols=210 Identities=16% Similarity=0.171 Sum_probs=108.4
Q ss_pred CCeEEEecCCeeEeEEeecChhHHHh----------------CCC------------------CCCcceeeCHHHHHHHH
Q 023557 15 AALILGLQPAALIDHVARVDWSLLDQ----------------IPG------------------ERGGSIPVAIEELEHIL 60 (280)
Q Consensus 15 ~~~i~~iG~~~~vD~~~~~~~~~l~~----------------~~~------------------~~g~~~~~~~~~~~~~~ 60 (280)
...|++-- |.+||-+..+..+.|+. +|. -.+.+..+..++...++
T Consensus 12 ~~~~~~aY-N~NiDai~~l~~~~l~~li~~~~~~~v~~~~e~~p~~I~s~~Dl~~~l~~~mk~G~aaE~~v~n~~l~~~~ 90 (463)
T PRK03979 12 NVSIFTAY-NSNVDAIKYLNDEDIQKLIEEFNEEEIIERIEEYPREINEPLDFVARLIHAMKTGKPAEVPLKNEELHEWF 90 (463)
T ss_pred cCceEEEe-ecchhheeecCHHHHHHHHHHhChHHHHHHhhcCCcccCCHHHHHHHHHHHHhCCCceEeeecCHHHHHHH
Confidence 55678887 99999999986654433 222 11112223323333333
Q ss_pred HhccccCCCCCCCceeecCchHHHHHHHHHhhcCCcE--EEEEeecCChhHHHHHHHHHh-CCCccc------eeee---
Q 023557 61 SEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPC--GLIGAYGDDQQGQLFVSNMQF-SGVDVS------RLRM--- 128 (280)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~~--~~~~~vG~D~~g~~i~~~L~~-~gV~~~------~v~~--- 128 (280)
.. + ......+.||.+.-.|..+++ +|.+. .+...++ +..+..|.. .+|-.- .+..
T Consensus 91 ~~--~-----~~~~~~rmGGqAgimAn~la~-lg~~~vV~~~p~ls-----k~qa~lf~~~~~i~~P~~e~g~l~l~~p~ 157 (463)
T PRK03979 91 DE--H-----LKYDEERMGGQAGIISNLLAI-LDLKKVIAYTPWLS-----KKQAEMFVDSDNLLYPVVENGKLVLKKPR 157 (463)
T ss_pred HH--h-----cccceEEeCChHHHHHHHHHh-cCCceEEEeCCCCC-----HHHHHHhCCCCCeeeccccCCceeeccch
Confidence 32 0 123456899999999999996 99884 3444444 333344422 111110 0000
Q ss_pred ----CCCCceeEEEE---------------EcCCCceeeeecCCcCCCCCc-ccCc---ccccCCCcEEEEE-ecCCCH-
Q 023557 129 ----KRGPTGQCVCL---------------VDASGNRTMRPCLSNAVKIQA-DELI---AEDVKGSKWLVLR-FGMFNF- 183 (280)
Q Consensus 129 ----~~~~T~~~~~~---------------~~~~g~r~~~~~~~~~~~~~~-~~l~---~~~~~~~~~v~i~-~~~~~~- 183 (280)
...++-..+++ +.|..+|-++.....+..+.. +++. .+.-..+|.++++ +.++..
T Consensus 158 e~~~~~d~~~IH~I~Ey~~G~~~~l~~~~~~aPRaNRfI~s~D~~n~~l~~~eef~~~L~ei~~~~D~avlSG~q~i~~~ 237 (463)
T PRK03979 158 EAYKPNDPLKINRIFEFKKGLEFKLGGEKIIVPRSNRFIVSSRPEWLRIEIKDELKEFLPEIGKMVDGAILSGYQGIKEE 237 (463)
T ss_pred hhccCCCCcceEEEEEeCCCCEEEecCccEecCCCCeEEEecCCCCccceecHHHHHHHHhhccCCCEEEEechhhhhcc
Confidence 01122223332 223334444443333333322 2221 1223459999999 443321
Q ss_pred -----------HHHHHHHHHH--HHCCCeEEEECCChHHHhhhhhHHH-hhccCCCceEEEcCHHHHHHHhc
Q 023557 184 -----------EVIQAAIRIA--KQEGLSVSMDLASFEMVRNFRTPLL-QLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 184 -----------~~~~~~~~~a--~~~g~~v~~D~~~~~~~~~~~~~l~-~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
+...+.++.. +..+.++-+.+.+..- ...+..+. .+++ .+|.+=+|++|+..+..
T Consensus 238 y~dg~~~~~~l~r~~~~i~~L~~~~~~i~iH~E~As~~~-~~ir~~i~~~ilp--~vDSlGmNE~ELa~l~~ 306 (463)
T PRK03979 238 YSDGKTAEYYLKRAKEDIKLLKKKNKDIKIHVEFASIQN-REIRKKIITYILP--HVDSVGMDETEIANILN 306 (463)
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCceEEEEeccccC-HHHHHHHHHhhcc--ccccccCCHHHHHHHHH
Confidence 1222233223 2346788999876532 13444444 4555 89999999999987653
No 81
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=96.38 E-value=0.012 Score=49.49 Aligned_cols=98 Identities=21% Similarity=0.166 Sum_probs=61.7
Q ss_pred cCCCcEEEEEecC--CCHHHHHHHHHHHHHCC--CeEEEECC---------ChHHHhhhhhHHHhhccCCCceEEEcCHH
Q 023557 168 VKGSKWLVLRFGM--FNFEVIQAAIRIAKQEG--LSVSMDLA---------SFEMVRNFRTPLLQLLESGDVDLCFANED 234 (280)
Q Consensus 168 ~~~~~~v~i~~~~--~~~~~~~~~~~~a~~~g--~~v~~D~~---------~~~~~~~~~~~l~~~l~~~~~dil~~N~~ 234 (280)
+..++.|.-.|.. ...+.+..++...|+.+ ...++||- +..+.+-|++ ++. +.+|+++||.-
T Consensus 79 ~~~Y~~vLTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~----~i~-~ladiiTPNqF 153 (308)
T KOG2599|consen 79 LNKYDAVLTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRD----LII-PLADIITPNQF 153 (308)
T ss_pred ccccceeeeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHH----hhc-chhhhcCCcch
Confidence 4567787776532 11344555555555554 34568872 2223333443 333 26999999999
Q ss_pred HHHHHhcCCC--CCcHHHHHHHH-hcCCCEEEEEcCCCc
Q 023557 235 EAAELVRGEE--NADSEAALEFL-AKRCQWAVVTLGPNG 270 (280)
Q Consensus 235 E~~~l~~~~~--~~~~~~~~~~l-~~~~~~vvvT~G~~G 270 (280)
|++.|+|... .++..++++++ +++++.+|||...-|
T Consensus 154 E~EiLtg~~I~t~eda~~a~~~lhq~~v~~vVITS~~~~ 192 (308)
T KOG2599|consen 154 EAEILTGMEIRTEEDAKRAVEKLHQKGVKTVVITSFDLG 192 (308)
T ss_pred hhhhhcCCeeccHHHHHHHHHHHHHhCCCEEEEEeeeeC
Confidence 9999998763 24555666666 468999999976544
No 82
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=95.94 E-value=0.11 Score=47.61 Aligned_cols=161 Identities=17% Similarity=0.088 Sum_probs=86.1
Q ss_pred CceeecCchHHHHHHHHHhhcCC-cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEE-----------EE
Q 023557 73 PIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVC-----------LV 140 (280)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~~lG~-~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~-----------~~ 140 (280)
......||.+.-.|..++. +|. +|.+.+.+... .....+...+|-.-.......+.-..++ ++
T Consensus 100 ~~~~~mGGnAgimAn~la~-~g~~~Vil~~p~~~k----~~~~L~~d~~i~~p~~e~~~~~d~IHlIlEy~~G~~~~~~~ 174 (445)
T cd01938 100 WDELRMGGNAGLMANRLAG-EGDLKVLLGVPQSSK----LQAELFLDGPIVVPTFENLIEEDEIHLILEYPRGESWGDFV 174 (445)
T ss_pred CceEEeCChHHHHHHHHHh-cCCceEEEecCCCcH----HHHHhCCCCCeeecccccCCCCCccEEEEEcCCCCEecceE
Confidence 4568999999999999996 998 77766665433 2223222212211100000001222222 23
Q ss_pred cCCCceeeeecCCcCCCCCcccCcccccCC-CcEEEEE-ecCCC-----HHHHHHHHHHHH------HCCCeEEEECCCh
Q 023557 141 DASGNRTMRPCLSNAVKIQADELIAEDVKG-SKWLVLR-FGMFN-----FEVIQAAIRIAK------QEGLSVSMDLASF 207 (280)
Q Consensus 141 ~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~i~-~~~~~-----~~~~~~~~~~a~------~~g~~v~~D~~~~ 207 (280)
.|.-+|-++.....+.....+++..+..+. .|.++++ +.++. .....+.+++++ ...+++-|.+++.
T Consensus 175 aPraNRfI~~~d~~n~l~~~ee~~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As~ 254 (445)
T cd01938 175 APRANRFIFHDDDNNPMLMREEFFSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELAST 254 (445)
T ss_pred cCCCCeEEEecCCcchhhhhHHHHHHHhhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEeccc
Confidence 344456555443333322222222334444 8999999 44321 222333333332 2347888998765
Q ss_pred HHHhhhhhHHH-hhccCCCceEEEcCHHHHHHHhc
Q 023557 208 EMVRNFRTPLL-QLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 208 ~~~~~~~~~l~-~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
.- ..++..+. .+++ .+|.+=+|++|+..+..
T Consensus 255 ~d-~~l~~~i~~~ilp--~VDSlGmNEqEL~~l~~ 286 (445)
T cd01938 255 VD-EELREEILHEVVP--YVDSLGLNEQELANLLQ 286 (445)
T ss_pred cc-HHHHHHHHHHhcc--cccccccCHHHHHHHHH
Confidence 32 23444443 4555 89999999999988764
No 83
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=95.89 E-value=0.038 Score=48.48 Aligned_cols=95 Identities=11% Similarity=0.029 Sum_probs=56.3
Q ss_pred CcEEEEEecCCCHHHHHHHHHHHHHCC------CeEEEECC-----ChHHHh--hhhhHHH-hhccCCCceEEEcCHHHH
Q 023557 171 SKWLVLRFGMFNFEVIQAAIRIAKQEG------LSVSMDLA-----SFEMVR--NFRTPLL-QLLESGDVDLCFANEDEA 236 (280)
Q Consensus 171 ~~~v~i~~~~~~~~~~~~~~~~a~~~g------~~v~~D~~-----~~~~~~--~~~~~l~-~~l~~~~~dil~~N~~E~ 236 (280)
.+++=+... -+.+.+..+.+..++.+ .++++||- +..+.. .+.+.+. .+++ .+++|+||..|+
T Consensus 74 i~aIKiGmL-~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp--~a~viTPN~~Ea 150 (321)
T PTZ00493 74 IDVVKLGVL-YSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICP--ISCIITPNFYEC 150 (321)
T ss_pred CCEEEECCc-CCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhc--cCEEECCCHHHH
Confidence 456656622 25555555555554432 24899993 221111 1222222 3666 999999999999
Q ss_pred HHHhc-----CC-CCCcHHHHHHHH-h-cCCCEEEEEcCC
Q 023557 237 AELVR-----GE-ENADSEAALEFL-A-KRCQWAVVTLGP 268 (280)
Q Consensus 237 ~~l~~-----~~-~~~~~~~~~~~l-~-~~~~~vvvT~G~ 268 (280)
+.|++ .. ..+++.++++.+ + .|++.|+||=|.
T Consensus 151 ~~L~g~~~~~~~~~~~~~~~aA~~l~~~~G~~~VliKGGh 190 (321)
T PTZ00493 151 KVILEALDCQMDLSKANMTELCKLVTEKLNINACLFKSCN 190 (321)
T ss_pred HHHhCCCcccCCCCHHHHHHHHHHHHHhcCCCEEEECcCC
Confidence 99987 21 122344555555 4 489999999776
No 84
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=95.23 E-value=0.037 Score=50.91 Aligned_cols=158 Identities=19% Similarity=0.237 Sum_probs=75.8
Q ss_pred eeecCchHHHHHHHHHhhcCCcEEEEEe-ecCChhHHHHHHHHHhCCCcccee--------e----eCC-CCceeEEEE-
Q 023557 75 KTIAGGSVTNTIRGLSVGFGVPCGLIGA-YGDDQQGQLFVSNMQFSGVDVSRL--------R----MKR-GPTGQCVCL- 139 (280)
Q Consensus 75 ~~~~GG~~~N~a~~la~~lG~~~~~~~~-vG~D~~g~~i~~~L~~~gV~~~~v--------~----~~~-~~T~~~~~~- 139 (280)
..+.||.+.-.|..||. ++....+++. ++. +.+.+.| ..+|-.-.+ . ..+ .+.-..+++
T Consensus 91 ~~r~GGnA~imAn~la~-l~~~~Vil~~p~~s----k~~~~l~-~~~i~~P~v~~~~~~l~~~~~a~~~~~~~~iH~IlE 164 (444)
T PF04587_consen 91 EERMGGNAGIMANRLAN-LEGCPVILYAPILS----KEQAELF-NDNIYVPVVENGELKLIHPREAFKEDDEDDIHLILE 164 (444)
T ss_dssp EEEEESHHHHHHHHHCC-TT-SEEEEE-SS------HHHHTTS-SSSEEEEEEETTEEEEEEGGGS-STT----EEEEEE
T ss_pred ccccCchHHHHHHHHHh-CCCCEEEEecCcCC----HHHHHhc-ccCcccccccCCcccccCchhccccCCccceEEEEE
Confidence 34599999999999995 7665544443 554 4455555 333311100 0 000 122223332
Q ss_pred ----------EcCCCceeeeecCCcCCCCCc-ccCc---ccccCCCcEEEEE-ecCCC--------H----HHHHHHHHH
Q 023557 140 ----------VDASGNRTMRPCLSNAVKIQA-DELI---AEDVKGSKWLVLR-FGMFN--------F----EVIQAAIRI 192 (280)
Q Consensus 140 ----------~~~~g~r~~~~~~~~~~~~~~-~~l~---~~~~~~~~~v~i~-~~~~~--------~----~~~~~~~~~ 192 (280)
+.|.-+|-++.+...+..+.. +++. .+...++|.++++ +.++. . +.+.+.++.
T Consensus 165 y~~G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~~~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~ 244 (444)
T PF04587_consen 165 YKKGEKWGDITAPRANRFIVSSDPYNPRLSILEEFFEALEEIAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKL 244 (444)
T ss_dssp E-TTEEETTEE-SS-EEEEEEE-SSGGGTS--HHHHHSHHHHHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHH
T ss_pred cCCCCeecceecCcCceEEEecCCCCccccchHHHHHHHHhhccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHh
Confidence 223334555444333333332 2221 2334569999999 44322 1 122333333
Q ss_pred HH-HCCCeEEEECCChHHHhhhhhHHH-hhccCCCceEEEcCHHHHHHHhc
Q 023557 193 AK-QEGLSVSMDLASFEMVRNFRTPLL-QLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 193 a~-~~g~~v~~D~~~~~~~~~~~~~l~-~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
.+ ..+.+|-+.+++..- ..++..+. .+++ .+|.+=+|++|+..+..
T Consensus 245 l~~~~~~~iH~E~As~~d-~~l~~~i~~~ilp--~vDSlGmNEqEL~~l~~ 292 (444)
T PF04587_consen 245 LKSNPDIPIHLELASFAD-EELRKEILEKILP--HVDSLGMNEQELANLLS 292 (444)
T ss_dssp HH-HTT-EEEEE----SS-HHHHHHHHHHHGG--GSSEEEEEHHHHHHHHH
T ss_pred ccCCCCCceEEEeccccC-HHHHHHHHHHhhc--cccccccCHHHHHHHHH
Confidence 44 578999999976532 23445544 5666 99999999999988754
No 85
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=95.16 E-value=1.6 Score=40.10 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=88.5
Q ss_pred CceeecCchHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCC------------------------ccceeee
Q 023557 73 PIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGV------------------------DVSRLRM 128 (280)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV------------------------~~~~v~~ 128 (280)
......||.+.-.|..++...|.+| ++.++.. .+.-.+.+...+| +.++|..
T Consensus 104 ~~~~rmGGnAgimAn~la~~~g~~V--ia~~~~l--sk~qa~lf~~~~I~~p~~~~~~l~l~~p~e~~~~~~d~IH~I~E 179 (453)
T PRK14038 104 WDELRMGGQVGIMANLLGGVYGVPV--IAHVPQL--SKLQASLFLDGPIYVPTFEGGELKLVHPREFVGDEENCIHYIYE 179 (453)
T ss_pred cceEEeCChHHHHHHHHHhhcCCce--EEECCCc--chhhHhhccCCCEEeccccCCcceeccchhcccCCCCccEEEEE
Confidence 3468999999999999974255665 5566532 1222222222222 1111111
Q ss_pred CCCCceeEEEEEcCCCceeeeecCCcCCCCCc-ccCc---ccccCCCcEEEEE-ecCCCH-------HHHHHHHHHHHHC
Q 023557 129 KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQA-DELI---AEDVKGSKWLVLR-FGMFNF-------EVIQAAIRIAKQE 196 (280)
Q Consensus 129 ~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~-~~l~---~~~~~~~~~v~i~-~~~~~~-------~~~~~~~~~a~~~ 196 (280)
-+....+ .-++.|.-+|-++.....+..+.. +++. .+...++|.++++ +.++.. +.+.+.++..+..
T Consensus 180 y~~G~~~-~~~~aPRaNRfI~s~D~~N~~l~~~eef~~~l~ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~ 258 (453)
T PRK14038 180 FPRGFRV-FDFEAPRENRFIGAADDYNPNLYIRPEFRERFEEIAKKAELAIISGLQALTEENYREPFETVREHLKVLNER 258 (453)
T ss_pred eCCCCEE-eeeEcCCCceEEEecCCCCcceeecHHHHHHHHhhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcC
Confidence 1111111 123334445655554444444322 2221 2445689999999 544321 2223333333445
Q ss_pred CCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhc
Q 023557 197 GLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 197 g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
++++-+.+.+..- ...++.+.++++ .+|.+-+|++|+..+..
T Consensus 259 ~i~iH~EfAs~~d-~~~r~~i~~ilp--~vDSlGmNE~ELa~ll~ 300 (453)
T PRK14038 259 GIPAHLEFAFTPD-ETVREEILGLLG--KFYSVGLNEVELASIME 300 (453)
T ss_pred CceEEEEeeccch-HHHHHHHHhhCc--cccccccCHHHHHHHHH
Confidence 7888899875421 235677778887 89999999999988765
No 86
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=94.57 E-value=1.8 Score=39.67 Aligned_cols=156 Identities=15% Similarity=0.190 Sum_probs=82.7
Q ss_pred eecCchHHHHHHHHHhhcCCcEE--EEEeecCChhHHHHHHHHHhC-CCccc-----e-eee-------CCCCceeEEE-
Q 023557 76 TIAGGSVTNTIRGLSVGFGVPCG--LIGAYGDDQQGQLFVSNMQFS-GVDVS-----R-LRM-------KRGPTGQCVC- 138 (280)
Q Consensus 76 ~~~GG~~~N~a~~la~~lG~~~~--~~~~vG~D~~g~~i~~~L~~~-gV~~~-----~-v~~-------~~~~T~~~~~- 138 (280)
.+.||.+.-.|..+++ +|.++. +...++ +..+..|.+. +|-.- . +.. .+.++-..++
T Consensus 86 ~rmGGqAgimAn~la~-lg~~~vI~~~~~ls-----~~qa~lf~~~~ni~~p~~e~g~l~l~~~~e~~~e~d~~~IH~I~ 159 (446)
T TIGR02045 86 ERMGGQAGIISNLLGR-LGLKKVIAYTPFLS-----KRQAEMFVATGNILYPVVENGKLVLKPPGEAYREGDPSKVNRIF 159 (446)
T ss_pred eeeCCHHHHHHHHHHh-cCCceEEEeCCCCC-----HHHHHHhCCcCceeeccccCCceeeccchhccCCCCCCceEEEE
Confidence 5899999999999996 998853 333344 3334444432 11100 0 000 0112222222
Q ss_pred --------------EEcCCCceeeeecCCcCCCCCc-ccCc---ccccCCCcEEEEE-ecCCC------------HHHHH
Q 023557 139 --------------LVDASGNRTMRPCLSNAVKIQA-DELI---AEDVKGSKWLVLR-FGMFN------------FEVIQ 187 (280)
Q Consensus 139 --------------~~~~~g~r~~~~~~~~~~~~~~-~~l~---~~~~~~~~~v~i~-~~~~~------------~~~~~ 187 (280)
++.|.-+|-++.....+..+.. +++. ++.-+.+|.++++ +.++. .+...
T Consensus 160 Ey~~G~~~~lg~~~~~aPRaNRfI~s~D~~n~~l~~~~~l~~~~~~i~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~ 239 (446)
T TIGR02045 160 EFRKGTNFKLGGETIKVPRSGRFIVSSRPESLRIETKDQLRKFLPEIGEPVDGAILSGYQGIKEEYSDGKTAKYYLERAK 239 (446)
T ss_pred EeCCCCeeecCCceEeccCCCeEEEecCCccccceecHHHHHhhhhhhhcccEEEEEchhhhhhhccCCccHhHHHHHHH
Confidence 2233334444433322222211 1111 2444678999999 44332 12233
Q ss_pred HHHHHHH-HCCCeEEEECCChHHHhhhhhHHH-hhccCCCceEEEcCHHHHHHHh
Q 023557 188 AAIRIAK-QEGLSVSMDLASFEMVRNFRTPLL-QLLESGDVDLCFANEDEAAELV 240 (280)
Q Consensus 188 ~~~~~a~-~~g~~v~~D~~~~~~~~~~~~~l~-~~l~~~~~dil~~N~~E~~~l~ 240 (280)
+.++..+ ..+.++-+...+..- ...+..+. .+++ .+|.+=+|++|+..+.
T Consensus 240 ~~i~~L~~~~~i~iH~E~As~~~-~~l~~~i~~~ilp--~vDSlGMNE~ELa~ll 291 (446)
T TIGR02045 240 EDIELLKKNKDLKIHVEFASIQN-REIRKKVVTNIFP--HVDSVGMDEAEIANVL 291 (446)
T ss_pred HHHHHHhhCCCCeEEEEeccccc-HHHHHHHHHhhcc--ccccccCCHHHHHHHH
Confidence 3344432 357889999876532 13344444 4555 8999999999998876
No 87
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=93.60 E-value=0.58 Score=39.39 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=66.7
Q ss_pred ccccCCCcEEEEEecC-CCH---HHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHh
Q 023557 165 AEDVKGSKWLVLRFGM-FNF---EVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELV 240 (280)
Q Consensus 165 ~~~~~~~~~v~i~~~~-~~~---~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~ 240 (280)
++++++-+++++..++ .++ ..+..+++-+++.++++++|-.+-.++++..+.+..-. ..-|++||-.|+..|+
T Consensus 96 ~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~---~~viLTPNvvEFkRLc 172 (306)
T KOG3974|consen 96 EKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPERLIGGY---PKVILTPNVVEFKRLC 172 (306)
T ss_pred HHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhchhhhhccC---ceeeeCCcHHHHHHHH
Confidence 4578888999999332 233 45677788889999999999977655544444333332 3478999999999998
Q ss_pred cCC--CCCcHHHHHHHHhcCCCEEEEEcCCCceEE
Q 023557 241 RGE--ENADSEAALEFLAKRCQWAVVTLGPNGCIA 273 (280)
Q Consensus 241 ~~~--~~~~~~~~~~~l~~~~~~vvvT~G~~Ga~~ 273 (280)
+.. ..++..+...+..+-...++|-.|+.-.++
T Consensus 173 d~~l~~~d~~~~~~~L~~~l~nv~vvqKG~~D~il 207 (306)
T KOG3974|consen 173 DAELDKVDSHSQMQHLAAELMNVTVVQKGESDKIL 207 (306)
T ss_pred HHhhccccchHHHHHHHHHhcCeEEEEecCCceee
Confidence 752 122233333333233345566666665443
No 88
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=91.29 E-value=0.87 Score=38.42 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=48.1
Q ss_pred cccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCC-
Q 023557 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE- 244 (280)
Q Consensus 166 ~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~- 244 (280)
+.++++|.+.+...+-..+...++++...+...++++|-..-....... .... ..-|++|+.-|+..|++...
T Consensus 63 ~~~~~~~av~iGPGlg~~~~~~~~~~~~~~~~~p~VlDADaL~~l~~~~----~~~~--~~~IlTPH~gE~~rL~~~~~~ 136 (242)
T PF01256_consen 63 ELLEKADAVVIGPGLGRDEETEELLEELLESDKPLVLDADALNLLAENP----KKRN--APVILTPHPGEFARLLGKSVE 136 (242)
T ss_dssp HHHCH-SEEEE-TT-SSSHHHHHHHHHHHHHCSTEEEECHHHHCHHHCC----CCSS--SCEEEE-BHHHHHHHHTTTCH
T ss_pred hhhccCCEEEeecCCCCchhhHHHHHHHHhhcceEEEehHHHHHHHhcc----ccCC--CCEEECCCHHHHHHHhCCccc
Confidence 4567899999993332223334455555556778999985432111111 1222 68999999999999998753
Q ss_pred -CCcHHHHHHHH
Q 023557 245 -NADSEAALEFL 255 (280)
Q Consensus 245 -~~~~~~~~~~l 255 (280)
..+..++.+.+
T Consensus 137 ~~~~~~~~a~~~ 148 (242)
T PF01256_consen 137 IQEDRIEAAREF 148 (242)
T ss_dssp HCCSHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 23444444433
No 89
>PRK10565 putative carbohydrate kinase; Provisional
Probab=90.95 E-value=2.1 Score=40.36 Aligned_cols=69 Identities=13% Similarity=0.058 Sum_probs=44.9
Q ss_pred cCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCC
Q 023557 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGE 243 (280)
Q Consensus 168 ~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~ 243 (280)
++.++.+++..++...+...++++.+++.++++++|...-........ .. ...+++||.-|+..|++..
T Consensus 318 ~~~~~a~viGpGlg~~~~~~~~~~~~~~~~~P~VLDAdaL~ll~~~~~-----~~--~~~VLTPh~gE~~rL~~~~ 386 (508)
T PRK10565 318 LEWADVVVIGPGLGQQEWGKKALQKVENFRKPMLWDADALNLLAINPD-----KR--HNRVITPHPGEAARLLGCS 386 (508)
T ss_pred hhcCCEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEchHHHHHhhCcc-----cc--CCeEECCCHHHHHHHhCCC
Confidence 467899999943323233355556777788999999965322111110 11 3579999999999999843
No 90
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=90.03 E-value=4.1 Score=33.67 Aligned_cols=69 Identities=19% Similarity=0.188 Sum_probs=46.7
Q ss_pred CCcEEEEEec--CCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhcc---CCCceEEEcCHHHHHHHhcC
Q 023557 170 GSKWLVLRFG--MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLE---SGDVDLCFANEDEAAELVRG 242 (280)
Q Consensus 170 ~~~~v~i~~~--~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~---~~~~dil~~N~~E~~~l~~~ 242 (280)
++.-|.++++ ++.++++.++++.+++.|+.+.+|.++... .+.+.++++ .-..|+-.++.+..+.++|.
T Consensus 38 sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~----~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~ 111 (213)
T PRK10076 38 SGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAP----ASKLLPLAKLCDEVLFDLKIMDATQARDVVKM 111 (213)
T ss_pred CCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCC----HHHHHHHHHhcCEEEEeeccCCHHHHHHHHCC
Confidence 4567888843 246788999999999999999999987531 122333333 11345555577777788875
No 91
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=87.56 E-value=3.1 Score=37.72 Aligned_cols=98 Identities=12% Similarity=0.015 Sum_probs=52.9
Q ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHCC-CeEEEECC-----ChHHH-hhhhhH-HHhhccCCCceEEEcCHHHHHHHhc
Q 023557 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEG-LSVSMDLA-----SFEMV-RNFRTP-LLQLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~~~~~~~~a~~~g-~~v~~D~~-----~~~~~-~~~~~~-l~~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
+|+++-.+.. .+++...-+.+...+.+ .++++||- +..+. ..+-+- ..++++ .+|++.||..|+..|.+
T Consensus 92 ~C~VvKTGML-~~~~I~~vi~q~l~~~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P--~adiltPNI~Ea~~Ll~ 168 (523)
T KOG2598|consen 92 KCDVVKTGML-PSPEIVKVIEQSLQKFNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLP--FADILTPNIPEAFILLK 168 (523)
T ss_pred cccEEeecCc-CchHHHHHHHHHHHhhcCcceeecceEEeccCCcccCCccHHHHHHHhhh--hHHHhCCChHHHHHHHh
Confidence 3555544421 24444433333333333 46778872 22111 111122 233454 89999999999999987
Q ss_pred CCC-----CCcHH---HHHHHH-hcCCCEEEEEcCCCc
Q 023557 242 GEE-----NADSE---AALEFL-AKRCQWAVVTLGPNG 270 (280)
Q Consensus 242 ~~~-----~~~~~---~~~~~l-~~~~~~vvvT~G~~G 270 (280)
... -.+.. ..++.+ +.|++.|+|+.|.-.
T Consensus 169 ~~~~~~~~i~~v~di~~~~~~ihk~gpk~VlvkGghiP 206 (523)
T KOG2598|consen 169 KEKREISKIQSVFDIAKDAAKIHKLGPKNVLVKGGHIP 206 (523)
T ss_pred hcccCCcccccHHHHHHHHHHHHhcCcceEEEeCCCcC
Confidence 421 12333 333344 458999999987643
No 92
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=82.61 E-value=14 Score=32.08 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=41.8
Q ss_pred ccCCCcEEEEEecCCCHHHHHHHHHHHHHCC-CeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcC
Q 023557 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEG-LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRG 242 (280)
Q Consensus 167 ~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g-~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~ 242 (280)
..+++|.+++...+-..+...++++..-... +++++|...-.....+. .... ..-.|++|+.-|++.|++.
T Consensus 98 ~~~~~~avviGpGlG~~~~~~~~~~~~l~~~~~p~ViDADaL~~la~~~----~~~~-~~~~VlTPH~gEf~rL~g~ 169 (284)
T COG0063 98 LVERADAVVIGPGLGRDAEGQEALKELLSSDLKPLVLDADALNLLAELP----DLLD-ERKVVLTPHPGEFARLLGT 169 (284)
T ss_pred hhccCCEEEECCCCCCCHHHHHHHHHHHhccCCCEEEeCcHHHHHHhCc----cccc-CCcEEECCCHHHHHHhcCC
Confidence 4577899999933312222334444444444 89999996532111111 1221 1348999999999999984
No 93
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=81.69 E-value=14 Score=29.19 Aligned_cols=108 Identities=11% Similarity=0.151 Sum_probs=62.8
Q ss_pred EEEEEee--cCChhHHHHHHHHHhCCCccceeeeCC----C-CceeEEEEEcCCCceeeeecCCcC-CCC-----CcccC
Q 023557 97 CGLIGAY--GDDQQGQLFVSNMQFSGVDVSRLRMKR----G-PTGQCVCLVDASGNRTMRPCLSNA-VKI-----QADEL 163 (280)
Q Consensus 97 ~~~~~~v--G~D~~g~~i~~~L~~~gV~~~~v~~~~----~-~T~~~~~~~~~~g~r~~~~~~~~~-~~~-----~~~~l 163 (280)
...-|.. |.-..-..+.+.|++.|.++..+...+ + ++++.++-++ .|++..+.+.+.. +.. ..+.+
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~-tg~~~~la~~~~~~~rvGkY~V~v~~l 86 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLA-TGEEGILARVGFSRPRVGKYGVNVEGL 86 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEcc-CCceEEEEEcCCCCcccceEEeeHHHH
Confidence 3444433 445566778888999988877765432 2 3555554444 5887776654432 111 11222
Q ss_pred c-------ccccCCCcEEEEE--ecC-CCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 164 I-------AEDVKGSKWLVLR--FGM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 164 ~-------~~~~~~~~~v~i~--~~~-~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+ +.+++.+|++.++ ..+ ..-....+.++..-+.++++++-+.
T Consensus 87 e~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlH 138 (179)
T COG1618 87 EEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLH 138 (179)
T ss_pred HHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEe
Confidence 2 2345678999999 322 2223445666777777888887775
No 94
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=79.04 E-value=24 Score=30.06 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=50.7
Q ss_pred CCcEEEEEecC--CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEE-----EcCHHHHHHHhcC
Q 023557 170 GSKWLVLRFGM--FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLC-----FANEDEAAELVRG 242 (280)
Q Consensus 170 ~~~~v~i~~~~--~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil-----~~N~~E~~~l~~~ 242 (280)
.++.|.++++. +..+.+.++++.+|+.|..+.+|.++... .+.+.++++ ..|.+ -++++-.+.+.+.
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~----~~~~~~l~~--~~D~v~~DlK~~~~~~y~~~tg~ 156 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLP----PEALEELLP--LLDAVLLDLKAFDDELYRKLTGA 156 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCC----HHHHHHHHh--hcCeEEEeeccCChHHHHHHhCC
Confidence 67889999432 45789999999999999999999987531 112223333 34444 3445547778775
Q ss_pred CCCCcHHHHHHHHhc
Q 023557 243 EENADSEAALEFLAK 257 (280)
Q Consensus 243 ~~~~~~~~~~~~l~~ 257 (280)
.. ....+.++.+.+
T Consensus 157 ~~-~~vl~~~~~l~~ 170 (260)
T COG1180 157 DN-EPVLENLELLAD 170 (260)
T ss_pred Cc-HHHHHHHHHHHc
Confidence 42 222334444444
No 95
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=78.60 E-value=4.7 Score=29.84 Aligned_cols=94 Identities=10% Similarity=0.114 Sum_probs=52.3
Q ss_pred EEeec-CChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcC-CCceeeeecC--CcCCCCCcccCcccccCCCcEEE
Q 023557 100 IGAYG-DDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDA-SGNRTMRPCL--SNAVKIQADELIAEDVKGSKWLV 175 (280)
Q Consensus 100 ~~~vG-~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~-~g~r~~~~~~--~~~~~~~~~~l~~~~~~~~~~v~ 175 (280)
++.+| ....|..+.+.|.+ +-+...+..... .. .|++.-..++ .....+..++...+.++++|+++
T Consensus 2 V~IvGAtG~vG~~l~~lL~~-hp~~e~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf 71 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLAE-HPDFELVALVSS---------SRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVF 71 (121)
T ss_dssp EEEESTTSHHHHHHHHHHHH-TSTEEEEEEEES---------TTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEE
T ss_pred EEEECCCCHHHHHHHHHHhc-CCCccEEEeeee---------ccccCCeeehhccccccccceeEeecchhHhhcCCEEE
Confidence 35566 66789999999987 333332221111 01 1222111111 01111222223345678999999
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 176 i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
+.. +.....++.....+.|+ .++|.++.
T Consensus 72 ~a~---~~~~~~~~~~~~~~~g~-~ViD~s~~ 99 (121)
T PF01118_consen 72 LAL---PHGASKELAPKLLKAGI-KVIDLSGD 99 (121)
T ss_dssp E-S---CHHHHHHHHHHHHHTTS-EEEESSST
T ss_pred ecC---chhHHHHHHHHHhhCCc-EEEeCCHH
Confidence 883 56677788888888887 77999875
No 96
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=76.93 E-value=35 Score=29.05 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=46.9
Q ss_pred CcccccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHH
Q 023557 163 LIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANED 234 (280)
Q Consensus 163 l~~~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~ 234 (280)
+......++|++++.....+.+.+.++++.+++.|..+.+|..... ++.+... ..+|++-.|..
T Consensus 126 i~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~-------E~~~A~~-~gadiIgin~r 189 (260)
T PRK00278 126 IYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEE-------ELERALK-LGAPLIGINNR 189 (260)
T ss_pred HHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHH-------HHHHHHH-cCCCEEEECCC
Confidence 3344567899999995434678899999999999999999998652 2333333 27899987753
No 97
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=76.48 E-value=7.3 Score=27.58 Aligned_cols=78 Identities=14% Similarity=0.269 Sum_probs=52.4
Q ss_pred eecC-ChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEEecC
Q 023557 102 AYGD-DQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGM 180 (280)
Q Consensus 102 ~vG~-D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~ 180 (280)
.+|. +..-..|++.+++.|....+. ++ + ++... ....+ +..++++|+|++-...
T Consensus 4 iVGG~~~~~~~~~~~~~~~G~~~~~h----g~--------~-~~~~~-----------~~~~l-~~~i~~aD~VIv~t~~ 58 (97)
T PF10087_consen 4 IVGGREDRERRYKRILEKYGGKLIHH----GR--------D-GGDEK-----------KASRL-PSKIKKADLVIVFTDY 58 (97)
T ss_pred EEcCCcccHHHHHHHHHHcCCEEEEE----ec--------C-CCCcc-----------chhHH-HHhcCCCCEEEEEeCC
Confidence 4555 447788888888888765433 10 1 11100 00112 2467889999988666
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEEC
Q 023557 181 FNFEVIQAAIRIAKQEGLSVSMDL 204 (280)
Q Consensus 181 ~~~~~~~~~~~~a~~~g~~v~~D~ 204 (280)
++.+.+..+-+.|++.++++++--
T Consensus 59 vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 59 VSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred cChHHHHHHHHHHHHcCCcEEEEC
Confidence 789999999999999999998776
No 98
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=72.52 E-value=52 Score=30.37 Aligned_cols=115 Identities=19% Similarity=0.181 Sum_probs=60.0
Q ss_pred HHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC-cEEEEEeecCChhH---HHHHHHHHhCCCccceeee
Q 023557 53 IEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQG---QLFVSNMQFSGVDVSRLRM 128 (280)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~-~~~~~~~vG~D~~g---~~i~~~L~~~gV~~~~v~~ 128 (280)
...+++.++...+. .......+|.+++.+.-++- ++. +-.+++. +.++ ..+...+...|+++.++..
T Consensus 63 v~~lE~~la~leg~-----~~av~~~SG~aAi~~al~al-l~~GD~VI~~~---~~Y~~T~~~~~~~l~~~Gi~v~~vd~ 133 (432)
T PRK06702 63 LAAFEQKLAELEGG-----VGAVATASGQAAIMLAVLNI-CSSGDHLLCSS---TVYGGTFNLFGVSLRKLGIDVTFFNP 133 (432)
T ss_pred HHHHHHHHHHHhCC-----CcEEEECCHHHHHHHHHHHh-cCCCCEEEECC---CchHHHHHHHHHHHHHCCCEEEEECC
Confidence 34555555544322 13455677777777665552 442 2233222 3343 4444446667776554411
Q ss_pred CCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEEecCCCHH----HHHHHHHHHHHCCCeEEEEC
Q 023557 129 KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFE----VIQAAIRIAKQEGLSVSMDL 204 (280)
Q Consensus 129 ~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~~~~----~~~~~~~~a~~~g~~v~~D~ 204 (280)
..+++.+...+-++.++|++...- .+. -+.++.+.|+++|+.+++|-
T Consensus 134 ----------------------------~~d~~~l~~~I~~~Tk~I~~e~pg-nP~~~v~Di~~I~~iA~~~gi~livD~ 184 (432)
T PRK06702 134 ----------------------------NLTADEIVALANDKTKLVYAESLG-NPAMNVLNFKEFSDAAKELEVPFIVDN 184 (432)
T ss_pred ----------------------------CCCHHHHHHhCCcCCeEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEC
Confidence 012222222222345677766221 121 36778888899999999997
Q ss_pred C
Q 023557 205 A 205 (280)
Q Consensus 205 ~ 205 (280)
.
T Consensus 185 T 185 (432)
T PRK06702 185 T 185 (432)
T ss_pred C
Confidence 4
No 99
>PRK06444 prephenate dehydrogenase; Provisional
Probab=71.86 E-value=22 Score=28.94 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=18.6
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCcc
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDV 123 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~ 123 (280)
..++| |....|+++...|++.|..+
T Consensus 3 ~~iiG--~~G~mG~~~~~~~~~~g~~v 27 (197)
T PRK06444 3 EIIIG--KNGRLGRVLCSILDDNGLGV 27 (197)
T ss_pred EEEEe--cCCcHHHHHHHHHHhCCCEE
Confidence 34444 33679999999999999765
No 100
>PRK05967 cystathionine beta-lyase; Provisional
Probab=68.61 E-value=85 Score=28.59 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=27.1
Q ss_pred CCcEEEEEec---CCCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 170 GSKWLVLRFG---MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 170 ~~~~v~i~~~---~~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.++|++++. ......+.++.+.|+++|+.+++|-.
T Consensus 149 ~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t 187 (395)
T PRK05967 149 NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNT 187 (395)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECC
Confidence 4677888832 23456678889999999999999975
No 101
>PRK08114 cystathionine beta-lyase; Provisional
Probab=67.78 E-value=54 Score=29.86 Aligned_cols=69 Identities=10% Similarity=0.046 Sum_probs=37.9
Q ss_pred CHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC-cEEEEEeecCChhHHHHHHHHHhCCCcccee
Q 023557 52 AIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRL 126 (280)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~-~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v 126 (280)
+....++.++.+.+. ......+.|.++..+..++. +.. +..+++.-.-...-..+.+.|++.||++.++
T Consensus 63 t~~~le~~la~LEg~-----~~a~~~~SGmaAi~~~~~~l-l~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~v 132 (395)
T PRK08114 63 THFSLQEAMCELEGG-----AGCALYPCGAAAVANAILAF-VEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWF 132 (395)
T ss_pred hHHHHHHHHHHHhCC-----CeEEEEhHHHHHHHHHHHHH-cCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEE
Confidence 345556666655432 24556677888888777763 553 3344432222122234445678888876654
No 102
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=63.82 E-value=86 Score=28.37 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=13.8
Q ss_pred HHHHHHHHHHCCCeEEEECC
Q 023557 186 IQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 186 ~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.++.+.+++.|..+++|-.
T Consensus 165 l~~I~~la~~~gi~livD~t 184 (390)
T PRK08133 165 IAALAEIAHAAGALLVVDNC 184 (390)
T ss_pred HHHHHHHHHHcCCEEEEECC
Confidence 45666667777777777764
No 103
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=63.45 E-value=66 Score=28.75 Aligned_cols=94 Identities=18% Similarity=0.272 Sum_probs=55.8
Q ss_pred CCcEEEEEeecCChhHHHHHHHHHh-CCCccceeee--CCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCC
Q 023557 94 GVPCGLIGAYGDDQQGQLFVSNMQF-SGVDVSRLRM--KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (280)
Q Consensus 94 G~~~~~~~~vG~D~~g~~i~~~L~~-~gV~~~~v~~--~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~ 170 (280)
+.++.++|.-| ..|+.+++.|++ ..+....+.. .....+..+.+ .+. .+..+.++.+.+++
T Consensus 5 ~~~VaIvGATG--~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~------------~~~--~l~v~~~~~~~~~~ 68 (347)
T PRK06728 5 GYHVAVVGATG--AVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQF------------KGR--EIIIQEAKINSFEG 68 (347)
T ss_pred CCEEEEEeCCC--HHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeee------------CCc--ceEEEeCCHHHhcC
Confidence 45677777776 579999999994 6777543322 11112222211 111 12222233334567
Q ss_pred CcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 171 ~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
.|+++++. +.+...++...+.+.|+ +++|.++.
T Consensus 69 ~Divf~a~---~~~~s~~~~~~~~~~G~-~VID~Ss~ 101 (347)
T PRK06728 69 VDIAFFSA---GGEVSRQFVNQAVSSGA-IVIDNTSE 101 (347)
T ss_pred CCEEEECC---ChHHHHHHHHHHHHCCC-EEEECchh
Confidence 89988873 45677777877777775 77999875
No 104
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=63.37 E-value=18 Score=32.05 Aligned_cols=157 Identities=20% Similarity=0.179 Sum_probs=76.3
Q ss_pred CceeecCchHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEE-----------Ec
Q 023557 73 PIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCL-----------VD 141 (280)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~-----------~~ 141 (280)
++....||.+.-.|.-.. +.....++|..|.-...-.+-+..+-.| +.+..+ -..+++ +.
T Consensus 137 R~~~~mGGNA~LMA~R~~--~~~~~~LlG~~~~R~~~~L~P~~~R~~~---~~I~~D----diHlILEYK~Gd~~G~~VA 207 (478)
T KOG4184|consen 137 RINWYMGGNAPLMAVRFF--MEGAQVLLGAHMSRKLRPLLPKEIRLAG---DEIPND----DIHLILEYKAGDKWGPYVA 207 (478)
T ss_pred hhhhhccCCchHHHHHHH--hccceeeecccccchhccccchhhhccc---CcCcCC----ceEEEEEeccCCccccccc
Confidence 566788998777777665 4458899999886533222222211111 111111 111222 12
Q ss_pred CCCceeeeecCCcCCCCCc-ccCccccc--CCCcEEEEEec-C---CCHHHHHHHHHHHH------HCCCeEEEECCChH
Q 023557 142 ASGNRTMRPCLSNAVKIQA-DELIAEDV--KGSKWLVLRFG-M---FNFEVIQAAIRIAK------QEGLSVSMDLASFE 208 (280)
Q Consensus 142 ~~g~r~~~~~~~~~~~~~~-~~l~~~~~--~~~~~v~i~~~-~---~~~~~~~~~~~~a~------~~g~~v~~D~~~~~ 208 (280)
|..+|.+....--++.+.. +.+ .+.+ =+.|.|+++.. + .+.+.-.+-++..+ -.|+++-+.+++..
T Consensus 208 P~anR~I~~~D~~n~~m~~~E~f-~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS~~ 286 (478)
T KOG4184|consen 208 PRANRYILHNDRNNPHMRAVEQF-TDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELASMT 286 (478)
T ss_pred ccccceeeecCCCChHHHHHHHH-HHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhHHH
Confidence 2233433322111111111 111 1222 35789999921 1 22222111111111 23677778887653
Q ss_pred HHhhhhhHHHhhccCCCceEEEcCHHHHHHHhc
Q 023557 209 MVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 209 ~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
......+-...+++ ++|-+=+|++|+..|..
T Consensus 287 ~~~l~~~i~h~VlP--yVdSLGlNEQEL~fL~q 317 (478)
T KOG4184|consen 287 NRELMSSIVHQVLP--YVDSLGLNEQELLFLTQ 317 (478)
T ss_pred HHHHHHHHHHHhhh--hccccCCCHHHHHHHHH
Confidence 22222333445676 99999999999987754
No 105
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=62.31 E-value=76 Score=28.22 Aligned_cols=95 Identities=16% Similarity=0.228 Sum_probs=53.2
Q ss_pred CcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEE
Q 023557 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174 (280)
Q Consensus 95 ~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v 174 (280)
.++..+|..| ..|..+.+.|.+.+.....+...... ...|++.- ..+ ..+..+.++...++++|++
T Consensus 5 ~~IaIvGATG--~vG~eLlrlL~~~~hP~~~l~~v~s~--------~~aG~~l~--~~~--~~l~~~~~~~~~~~~vD~v 70 (336)
T PRK05671 5 LDIAVVGATG--TVGEALVQILEERDFPVGTLHLLASS--------ESAGHSVP--FAG--KNLRVREVDSFDFSQVQLA 70 (336)
T ss_pred CEEEEEccCC--HHHHHHHHHHhhCCCCceEEEEEECc--------ccCCCeec--cCC--cceEEeeCChHHhcCCCEE
Confidence 3566666666 47999999999765443322211100 00122211 111 1122222222234788999
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 175 VLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 175 ~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
++.. +.....++++.+.+.|+ .++|.++.
T Consensus 71 Fla~---p~~~s~~~v~~~~~~G~-~VIDlS~~ 99 (336)
T PRK05671 71 FFAA---GAAVSRSFAEKARAAGC-SVIDLSGA 99 (336)
T ss_pred EEcC---CHHHHHHHHHHHHHCCC-eEEECchh
Confidence 8873 45677778888888886 57999875
No 106
>PRK07050 cystathionine beta-lyase; Provisional
Probab=61.54 E-value=1.3e+02 Score=27.34 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=25.1
Q ss_pred CCcEEEEEec---CCCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 170 GSKWLVLRFG---MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 170 ~~~~v~i~~~---~~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.++|+++.. ..+...+.++.+.++++|..+++|-.
T Consensus 150 ~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a 188 (394)
T PRK07050 150 NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNT 188 (394)
T ss_pred CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECC
Confidence 4567776621 13456677888888888998998875
No 107
>PRK05968 hypothetical protein; Provisional
Probab=60.99 E-value=1.3e+02 Score=27.22 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=26.0
Q ss_pred CCCcEEEEEe--c-CCCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 169 KGSKWLVLRF--G-MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 169 ~~~~~v~i~~--~-~~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
.+.++|++.. . ......+.++.+.++++|..+++|-.
T Consensus 146 ~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a 185 (389)
T PRK05968 146 PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNS 185 (389)
T ss_pred ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 4556777772 1 23456677888888888998888874
No 108
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=60.98 E-value=36 Score=27.09 Aligned_cols=63 Identities=17% Similarity=0.164 Sum_probs=46.8
Q ss_pred CcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHH
Q 023557 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA 237 (280)
Q Consensus 171 ~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~ 237 (280)
++++......++.+.+..+.+..+++|+.|+.||..+. +..|..+.+.++ .+-..|....++.
T Consensus 23 ~~~I~T~Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~~G--ekIRk~i~~~vp--~~khafi~~~~a~ 85 (174)
T TIGR00334 23 VDVIETNGSALKDETINLIKKAQKKQGVIILTDPDFPG--EKIRKKIEQHLP--GYENCFIPKHLAK 85 (174)
T ss_pred ceEEEECCCccCHHHHHHHHHHhhcCCEEEEeCCCCch--HHHHHHHHHHCC--CCeEEeeeHHhcC
Confidence 56665554335777777777777889999999996543 456777888777 7888888888875
No 109
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=60.46 E-value=1.3e+02 Score=26.95 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=24.9
Q ss_pred CCcEEEEEe---cCCCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 170 GSKWLVLRF---GMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 170 ~~~~v~i~~---~~~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.++|++.. ...+...+.++.+.++++|..+++|-.
T Consensus 136 ~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t 174 (366)
T PRK08247 136 NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNT 174 (366)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 456777762 113456677888888888888888864
No 110
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=59.82 E-value=59 Score=28.99 Aligned_cols=95 Identities=22% Similarity=0.263 Sum_probs=54.8
Q ss_pred cCCcEEEEEeecCChhHHHHHHHHHhCCCccceeee-C-CCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCC
Q 023557 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM-K-RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (280)
Q Consensus 93 lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~-~-~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~ 170 (280)
-..++..+|.-|. .|..+.+.|.+.+-....+.. . ....+..+.. .+ ..+..++++.+.+++
T Consensus 6 ~~~kVaVvGAtG~--vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~------------~~--~~~~v~~~~~~~~~~ 69 (344)
T PLN02383 6 NGPSVAIVGVTGA--VGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF------------EG--RDYTVEELTEDSFDG 69 (344)
T ss_pred CCCeEEEEcCCCh--HHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee------------cC--ceeEEEeCCHHHHcC
Confidence 4567888888774 699999999875543332221 1 1111111111 11 112223333344578
Q ss_pred CcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 171 ~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
+|++++.. +.+...++...+.+.|+ .++|.++.
T Consensus 70 ~D~vf~a~---p~~~s~~~~~~~~~~g~-~VIDlS~~ 102 (344)
T PLN02383 70 VDIALFSA---GGSISKKFGPIAVDKGA-VVVDNSSA 102 (344)
T ss_pred CCEEEECC---CcHHHHHHHHHHHhCCC-EEEECCch
Confidence 99998873 44566777777767775 67999875
No 111
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=59.29 E-value=72 Score=28.78 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=54.5
Q ss_pred cEEEEEeecCChhHHHHHH-HHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCc-ccccCCCcE
Q 023557 96 PCGLIGAYGDDQQGQLFVS-NMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI-AEDVKGSKW 173 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~-~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~-~~~~~~~~~ 173 (280)
++.++|.-| ..|+.+.+ .|++..+....+...... . .|.+... ..+.. ....++. .+.++++|+
T Consensus 3 ~VAIVGATG--~vG~ell~llL~~~~f~~~~l~~~ss~--------~-sg~~~~~-f~g~~--~~v~~~~~~~~~~~~Di 68 (369)
T PRK06598 3 KVGFVGWRG--MVGSVLMQRMVEENDFDLIEPVFFSTS--------Q-AGGAAPS-FGGKE--GTLQDAFDIDALKKLDI 68 (369)
T ss_pred EEEEEeCCC--HHHHHHHHHHHhCCCCCcCcEEEecch--------h-hCCcccc-cCCCc--ceEEecCChhHhcCCCE
Confidence 456666666 47888887 888877764444332110 1 1111111 11111 1111111 234577899
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCe-EEEECCCh
Q 023557 174 LVLRFGMFNFEVIQAAIRIAKQEGLS-VSMDLASF 207 (280)
Q Consensus 174 v~i~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~ 207 (280)
++++. +.+...++...+.+.|.+ +++|.++.
T Consensus 69 vf~a~---~~~~s~~~~~~~~~aG~~~~VID~Ss~ 100 (369)
T PRK06598 69 IITCQ---GGDYTNEVYPKLRAAGWQGYWIDAAST 100 (369)
T ss_pred EEECC---CHHHHHHHHHHHHhCCCCeEEEECChH
Confidence 88883 556777888888888874 78999875
No 112
>PRK09028 cystathionine beta-lyase; Provisional
Probab=58.99 E-value=72 Score=29.03 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=27.5
Q ss_pred CCCcEEEEEec---CCCHHHHHHHHHHHHHCCCeEEEECCC
Q 023557 169 KGSKWLVLRFG---MFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (280)
Q Consensus 169 ~~~~~v~i~~~---~~~~~~~~~~~~~a~~~g~~v~~D~~~ 206 (280)
++.++|++++. ......+.++.+.++++|..+++|-..
T Consensus 145 ~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~ 185 (394)
T PRK09028 145 PNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTW 185 (394)
T ss_pred cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCc
Confidence 35678888822 123566788889999999999999753
No 113
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=52.98 E-value=59 Score=27.55 Aligned_cols=72 Identities=11% Similarity=0.146 Sum_probs=54.6
Q ss_pred cccCcccccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHH
Q 023557 160 ADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAEL 239 (280)
Q Consensus 160 ~~~l~~~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l 239 (280)
+.++.+...-++|.|.+-....+++.+..+++.+++.|..+.+..... +++...+.. .++++-.|-..+..+
T Consensus 114 ~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~-------~El~~a~~~-ga~iiGINnRdL~t~ 185 (247)
T PRK13957 114 EIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTE-------DEAKLALDC-GAEIIGINTRDLDTF 185 (247)
T ss_pred HHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCH-------HHHHHHHhC-CCCEEEEeCCCCccc
Confidence 344445556789999888555678889999999999999999999764 445445442 789999998877655
No 114
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=52.90 E-value=1.3e+02 Score=26.70 Aligned_cols=94 Identities=15% Similarity=0.164 Sum_probs=53.0
Q ss_pred CCcEEEEEeecCChhHHHHHHHHHhCC---CccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCC
Q 023557 94 GVPCGLIGAYGDDQQGQLFVSNMQFSG---VDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (280)
Q Consensus 94 G~~~~~~~~vG~D~~g~~i~~~L~~~g---V~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~ 170 (280)
+.++.++|.-| ..|+.+.+.|.+.. ++...+... ...+..+.+ .+. .+..+.++...+++
T Consensus 4 ~~~vaIvGATG--~vG~ellrlL~~~~hP~~~l~~laS~-~saG~~~~~------------~~~--~~~v~~~~~~~~~~ 66 (336)
T PRK08040 4 GWNIALLGATG--AVGEALLELLAERQFPVGELYALASE-ESAGETLRF------------GGK--SVTVQDAAEFDWSQ 66 (336)
T ss_pred CCEEEEEccCC--HHHHHHHHHHhcCCCCceEEEEEEcc-CcCCceEEE------------CCc--ceEEEeCchhhccC
Confidence 35667777666 57999999999842 222222111 112222221 111 11112222223367
Q ss_pred CcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChH
Q 023557 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (280)
Q Consensus 171 ~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~ 208 (280)
+|++++.. +.....++...+.+.|+ .++|.++..
T Consensus 67 ~Dvvf~a~---p~~~s~~~~~~~~~~g~-~VIDlS~~f 100 (336)
T PRK08040 67 AQLAFFVA---GREASAAYAEEATNAGC-LVIDSSGLF 100 (336)
T ss_pred CCEEEECC---CHHHHHHHHHHHHHCCC-EEEECChHh
Confidence 89988873 56677788888877777 579998753
No 115
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=52.50 E-value=1.5e+02 Score=25.45 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=41.0
Q ss_pred cEEEEEe-cC-CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEE-----cCHHHHHHHhcC
Q 023557 172 KWLVLRF-GM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCF-----ANEDEAAELVRG 242 (280)
Q Consensus 172 ~~v~i~~-~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~-----~N~~E~~~l~~~ 242 (280)
..|.++. .. +.++.+.++++.+++.|..+.++.++... .+.+.+++. ..|++. .+++....+.|.
T Consensus 127 ~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~----~~~~~~ll~--~~d~~~isl~~~~~~~~~~~~g~ 198 (295)
T TIGR02494 127 GGVTLSGGEPLLQPEFALALLQACHERGIHTAVETSGFTP----WETIEKVLP--YVDLFLFDIKHLDDERHKEVTGV 198 (295)
T ss_pred CcEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeCCCCCC----HHHHHHHHh--hCCEEEEeeccCChHHHHHHhCC
Confidence 4577773 22 45777789999999999999999987521 233444444 455543 345555556553
No 116
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=52.42 E-value=1.7e+02 Score=26.63 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=20.9
Q ss_pred CCcEEEEEec--C-CCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 170 GSKWLVLRFG--M-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 170 ~~~~v~i~~~--~-~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.++|++.+. . .....+.++.+.+++.|..+++|-.
T Consensus 155 ~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a 193 (403)
T PRK07810 155 PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNV 193 (403)
T ss_pred CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 4566666521 1 1112355666777778888888865
No 117
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=51.80 E-value=1.3e+02 Score=26.52 Aligned_cols=92 Identities=20% Similarity=0.236 Sum_probs=51.6
Q ss_pred CcEEEEEeecCChhHHHHHHHHHhCCCcc---ceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCC
Q 023557 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDV---SRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGS 171 (280)
Q Consensus 95 ~~~~~~~~vG~D~~g~~i~~~L~~~gV~~---~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (280)
.++.++|.-| ..|+.+.+.|.+.+-.. ..+.... ..+..+.+ .+....+ .++....++++
T Consensus 2 ~~V~IvGAtG--~vG~~l~~lL~~~~hp~~~l~~l~s~~-~~g~~l~~---~g~~i~v-----------~d~~~~~~~~v 64 (334)
T PRK14874 2 YNVAVVGATG--AVGREMLNILEERNFPVDKLRLLASAR-SAGKELSF---KGKELKV-----------EDLTTFDFSGV 64 (334)
T ss_pred CEEEEECCCC--HHHHHHHHHHHhCCCCcceEEEEEccc-cCCCeeee---CCceeEE-----------eeCCHHHHcCC
Confidence 4567777766 46999999999865443 3332221 12222221 1211111 11111223678
Q ss_pred cEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 172 KWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 172 ~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
|+++++. +.....++.+...+.|. +++|.++.
T Consensus 65 DvVf~A~---g~g~s~~~~~~~~~~G~-~VIDlS~~ 96 (334)
T PRK14874 65 DIALFSA---GGSVSKKYAPKAAAAGA-VVIDNSSA 96 (334)
T ss_pred CEEEECC---ChHHHHHHHHHHHhCCC-EEEECCch
Confidence 9988883 34455666666666777 78999875
No 118
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=51.68 E-value=82 Score=22.37 Aligned_cols=58 Identities=12% Similarity=0.116 Sum_probs=35.3
Q ss_pred cCCCcEEEEEe-cCC--CHHHHHHHHHHHHHCC---CeEEEECCChHHHhhhhhHHHhhccCCCceEEE
Q 023557 168 VKGSKWLVLRF-GMF--NFEVIQAAIRIAKQEG---LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCF 230 (280)
Q Consensus 168 ~~~~~~v~i~~-~~~--~~~~~~~~~~~a~~~g---~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~ 230 (280)
.+++|++++++ ... ..+.+...+..+++.+ .+|++--.-+ +.+.+.+.+..+ .+|+++
T Consensus 34 ~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~a---q~~~~~l~~~~p--~vd~v~ 97 (98)
T PF00919_consen 34 PEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMA---QRYGEELKKEFP--EVDLVV 97 (98)
T ss_pred cccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCcc---ccChHHHHhhCC--CeEEEe
Confidence 46889999992 221 2233444455555544 6666665433 356677877776 789886
No 119
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=51.65 E-value=1.5e+02 Score=26.29 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=54.1
Q ss_pred CcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCccc--CcccccCCCc
Q 023557 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADE--LIAEDVKGSK 172 (280)
Q Consensus 95 ~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~--l~~~~~~~~~ 172 (280)
.++.++|..| ..|+.+.+.|++.+.....+..-.. .. .-|++...+. +-. +...+ .+....++.|
T Consensus 2 ~~VavvGATG--~VG~~~~~~L~e~~f~~~~~~~~AS-------~r-SaG~~~~~f~-~~~--~~v~~~~~~~~~~~~~D 68 (334)
T COG0136 2 LNVAVLGATG--AVGQVLLELLEERHFPFEELVLLAS-------AR-SAGKKYIEFG-GKS--IGVPEDAADEFVFSDVD 68 (334)
T ss_pred cEEEEEeccc--hHHHHHHHHHHhcCCCcceEEEEec-------cc-ccCCcccccc-Ccc--ccCccccccccccccCC
Confidence 4577788777 4799999999997666553322111 00 1233311111 100 11111 2223455899
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 173 WLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 173 ~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
+++++. .-+...++...+.+.|+ +++|-++.
T Consensus 69 ivf~~a---g~~~s~~~~p~~~~~G~-~VIdnsSa 99 (334)
T COG0136 69 IVFFAA---GGSVSKEVEPKAAEAGC-VVIDNSSA 99 (334)
T ss_pred EEEEeC---chHHHHHHHHHHHHcCC-EEEeCCcc
Confidence 999883 23455777888889895 66777653
No 120
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=51.52 E-value=37 Score=22.67 Aligned_cols=43 Identities=19% Similarity=0.253 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhhcCCcEEEEEeec------CChhHHHHHHHHHhCCCccc
Q 023557 81 SVTNTIRGLSVGFGVPCGLIGAYG------DDQQGQLFVSNMQFSGVDVS 124 (280)
Q Consensus 81 ~~~N~a~~la~~lG~~~~~~~~vG------~D~~g~~i~~~L~~~gV~~~ 124 (280)
.|.=.|..+++ +|.+++++..-. +....+.+.+.|++.||+..
T Consensus 10 ig~E~A~~l~~-~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 10 IGIELAEALAE-LGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp HHHHHHHHHHH-TTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHH-hCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 34556777885 999999987643 33367888899999998765
No 121
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=50.27 E-value=1.7e+02 Score=26.92 Aligned_cols=38 Identities=16% Similarity=0.055 Sum_probs=24.0
Q ss_pred CCCcEEEEEecCCC---HHHHHHHHHHHHHCCCeEEEECCC
Q 023557 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLAS 206 (280)
Q Consensus 169 ~~~~~v~i~~~~~~---~~~~~~~~~~a~~~g~~v~~D~~~ 206 (280)
++.++|++.....+ ..-+.++.+.++++|+.+++|-..
T Consensus 148 ~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~ 188 (433)
T PRK08134 148 PNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTF 188 (433)
T ss_pred CCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 34567776621111 123567788888889999999753
No 122
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=49.73 E-value=90 Score=24.04 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=42.1
Q ss_pred CcEEEEE-ecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHH
Q 023557 171 SKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (280)
Q Consensus 171 ~~~v~i~-~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~ 236 (280)
.+.|.|+ .. ...+.+.++++.+++.|..+.++.+.. +.+...++++ ..|+++...-+.
T Consensus 62 ~~gVt~SGGE-l~~~~l~~ll~~lk~~Gl~i~l~Tg~~-----~~~~~~~il~--~iD~l~~g~y~~ 120 (147)
T TIGR02826 62 ISCVLFLGGE-WNREALLSLLKIFKEKGLKTCLYTGLE-----PKDIPLELVQ--HLDYLKTGRWIH 120 (147)
T ss_pred CCEEEEechh-cCHHHHHHHHHHHHHCCCCEEEECCCC-----CHHHHHHHHH--hCCEEEEChHHH
Confidence 3578888 55 667788999999999999999998742 1122334555 899999887533
No 123
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=49.45 E-value=1.8e+02 Score=25.92 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=14.7
Q ss_pred HHHHHHHHHHCCCeEEEECC
Q 023557 186 IQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 186 ~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.++.+.+++.|..+++|-.
T Consensus 144 l~~i~~la~~~g~~livD~t 163 (369)
T cd00614 144 IEAIAELAHEHGALLVVDNT 163 (369)
T ss_pred HHHHHHHHHHcCCEEEEECC
Confidence 45666777788888888875
No 124
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=49.32 E-value=43 Score=30.47 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=37.7
Q ss_pred CCCCcccCcccccCCCcEEEEEe--cC----CCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 156 VKIQADELIAEDVKGSKWLVLRF--GM----FNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 156 ~~~~~~~l~~~~~~~~~~v~i~~--~~----~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
-.+++++++...-++.++++++. +. .+++.+.++++.|+++|..++.|-.
T Consensus 158 ~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDev 213 (420)
T KOG0257|consen 158 WTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEV 213 (420)
T ss_pred ccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhH
Confidence 33455555555667899999992 21 5789999999999999998888863
No 125
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=49.06 E-value=1.4e+02 Score=25.82 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=31.9
Q ss_pred ceeecCchHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCC
Q 023557 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGV 121 (280)
Q Consensus 74 ~~~~~GG~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV 121 (280)
...-.||++.-++.+|+. +|..-..+-.--.+ -.+.+.+.+.+.+.
T Consensus 130 lilGAGGAarAv~~aL~~-~g~~~i~V~NRt~~-ra~~La~~~~~~~~ 175 (283)
T COG0169 130 LILGAGGAARAVAFALAE-AGAKRITVVNRTRE-RAEELADLFGELGA 175 (283)
T ss_pred EEECCcHHHHHHHHHHHH-cCCCEEEEEeCCHH-HHHHHHHHhhhccc
Confidence 446689999999999995 99754444333333 47788888887665
No 126
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=48.94 E-value=1.9e+02 Score=25.57 Aligned_cols=92 Identities=7% Similarity=0.047 Sum_probs=56.1
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVL 176 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i 176 (280)
+.+ |+.| ..|+.+++.|++.+.....+..-..+ +. ..|+...+ .+ ..+..+.+..+.+++.|+++|
T Consensus 6 iAi-GATg--~VG~~~l~~Leer~fpv~~l~l~~s~------~~-s~gk~i~f--~g--~~~~V~~l~~~~f~~vDia~f 71 (322)
T PRK06901 6 IAI-AAEF--ELSEKLLEALEQSDLEIEQISIVEIE------PF-GEEQGIRF--NN--KAVEQIAPEEVEWADFNYVFF 71 (322)
T ss_pred EEE-ecCc--HHHHHHHHHHHhcCCchhheeecccc------cc-cCCCEEEE--CC--EEEEEEECCccCcccCCEEEE
Confidence 444 5555 58999999999999877644432111 01 12221111 12 223444555556788999888
Q ss_pred EecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 177 RFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 177 ~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
. ..+...++...+.+.|. +++|.++.
T Consensus 72 -a---g~~~s~~~ap~a~~aG~-~VIDnSsa 97 (322)
T PRK06901 72 -A---GKMAQAEHLAQAAEAGC-IVIDLYGI 97 (322)
T ss_pred -c---CHHHHHHHHHHHHHCCC-EEEECChH
Confidence 3 34577788888888887 56888764
No 127
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=48.06 E-value=2.1e+02 Score=25.82 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=54.4
Q ss_pred cEEEEEeecCChhHHHHHHHHH-hCCCccceeee-CCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcc-cccCCCc
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQ-FSGVDVSRLRM-KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA-EDVKGSK 172 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~-~~gV~~~~v~~-~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~-~~~~~~~ 172 (280)
++.++|..| ..|+.+++.|+ +.......+.. ...+. .|+ ... ..+.. ....++.. +.+++.|
T Consensus 2 ~VavvGATG--~VG~~ll~~L~~e~~fp~~~~~~~ss~~s---------~g~-~~~-f~~~~--~~v~~~~~~~~~~~vD 66 (366)
T TIGR01745 2 NVGLVGWRG--MVGSVLMQRMQEERDFDAIRPVFFSTSQL---------GQA-APS-FGGTT--GTLQDAFDIDALKALD 66 (366)
T ss_pred eEEEEcCcC--HHHHHHHHHHHhCCCCccccEEEEEchhh---------CCC-cCC-CCCCc--ceEEcCcccccccCCC
Confidence 356666666 58999999888 65665332322 11111 111 111 11111 12222322 2567889
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHCCCe-EEEECCCh
Q 023557 173 WLVLRFGMFNFEVIQAAIRIAKQEGLS-VSMDLASF 207 (280)
Q Consensus 173 ~v~i~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~ 207 (280)
+++++. +.+...++...+++.|.. +++|.++.
T Consensus 67 ivffa~---g~~~s~~~~p~~~~aG~~~~VIDnSSa 99 (366)
T TIGR01745 67 IIITCQ---GGDYTNEIYPKLRESGWQGYWIDAASS 99 (366)
T ss_pred EEEEcC---CHHHHHHHHHHHHhCCCCeEEEECChh
Confidence 998883 446777888888999973 78999865
No 128
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=47.95 E-value=41 Score=28.64 Aligned_cols=73 Identities=14% Similarity=0.231 Sum_probs=52.1
Q ss_pred CcccCcccccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHH
Q 023557 159 QADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAE 238 (280)
Q Consensus 159 ~~~~l~~~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~ 238 (280)
++-++.+....++|.|.+-...++.+.+.++++.|++.|.-+.+..... +++...+.. .++++-+|-..+..
T Consensus 120 d~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~-------~El~~al~~-~a~iiGINnRdL~t 191 (254)
T PF00218_consen 120 DPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNE-------EELERALEA-GADIIGINNRDLKT 191 (254)
T ss_dssp SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSH-------HHHHHHHHT-T-SEEEEESBCTTT
T ss_pred CHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCH-------HHHHHHHHc-CCCEEEEeCccccC
Confidence 3444445667899999988655688889999999999999999999875 344444442 68999998766554
Q ss_pred H
Q 023557 239 L 239 (280)
Q Consensus 239 l 239 (280)
+
T Consensus 192 f 192 (254)
T PF00218_consen 192 F 192 (254)
T ss_dssp C
T ss_pred c
Confidence 4
No 129
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=47.40 E-value=2e+02 Score=26.05 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=21.4
Q ss_pred CCcEEEEEec--C-CCHHHHHHHHHHHHHCCCeEEEECCC
Q 023557 170 GSKWLVLRFG--M-FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (280)
Q Consensus 170 ~~~~v~i~~~--~-~~~~~~~~~~~~a~~~g~~v~~D~~~ 206 (280)
+.++|++... . ....-+.++.+.+++.|+.+++|-..
T Consensus 144 ~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~ 183 (391)
T TIGR01328 144 NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTF 183 (391)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 4566766521 1 11112456667777888888888753
No 130
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=47.27 E-value=2.1e+02 Score=25.65 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=14.3
Q ss_pred HHHHHHHHHHCCCeEEEECC
Q 023557 186 IQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 186 ~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.++.+.+++.|+.+++|-.
T Consensus 158 l~~I~~la~~~gi~livD~a 177 (380)
T TIGR01325 158 IAALAELAHAIGALLVVDNV 177 (380)
T ss_pred HHHHHHHHHHcCCEEEEECC
Confidence 45566667777888888875
No 131
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=46.78 E-value=2.2e+02 Score=26.23 Aligned_cols=36 Identities=22% Similarity=0.143 Sum_probs=21.3
Q ss_pred CCcEEEEEec--C-CCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 170 GSKWLVLRFG--M-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 170 ~~~~v~i~~~--~-~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.++|++... . ...--+.++.+.+++.|+.+++|-.
T Consensus 149 ~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t 187 (431)
T PRK08248 149 KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNT 187 (431)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCC
Confidence 4567777621 1 0111235667777888888888875
No 132
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=46.57 E-value=1.4e+02 Score=28.88 Aligned_cols=121 Identities=16% Similarity=0.082 Sum_probs=72.0
Q ss_pred EEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEEe
Q 023557 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRF 178 (280)
Q Consensus 99 ~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~ 178 (280)
.+-.+|-+.+|+.+.+.|++.|+++.-+..++. ... ...+.|.+.++ |... +++.+...-+++++++++..
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~--~v~--~~~~~g~~v~~---GDat--~~~~L~~agi~~A~~vv~~~ 472 (601)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMANKMRITVLERDIS--AVN--LMRKYGYKVYY---GDAT--QLELLRAAGAEKAEAIVITC 472 (601)
T ss_pred CEEEecCchHHHHHHHHHHhCCCCEEEEECCHH--HHH--HHHhCCCeEEE---eeCC--CHHHHHhcCCccCCEEEEEe
Confidence 355578889999999999999998754444322 111 11123444432 3221 33444445678899998885
Q ss_pred cCCCHHHHHHHHHHHHHCC--CeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHH
Q 023557 179 GMFNFEVIQAAIRIAKQEG--LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAE 238 (280)
Q Consensus 179 ~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~ 238 (280)
. +.+....++..+|+.. .+++.=..++ ...+.+.+ ..+|.+.+-..|...
T Consensus 473 ~--d~~~n~~i~~~~r~~~p~~~IiaRa~~~----~~~~~L~~----~Ga~~vv~e~~es~l 524 (601)
T PRK03659 473 N--EPEDTMKIVELCQQHFPHLHILARARGR----VEAHELLQ----AGVTQFSRETFSSAL 524 (601)
T ss_pred C--CHHHHHHHHHHHHHHCCCCeEEEEeCCH----HHHHHHHh----CCCCEEEccHHHHHH
Confidence 4 4555666777777653 4666655443 23334443 278999887666644
No 133
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=45.53 E-value=71 Score=24.71 Aligned_cols=8 Identities=13% Similarity=0.252 Sum_probs=5.8
Q ss_pred CCcEEEEE
Q 023557 170 GSKWLVLR 177 (280)
Q Consensus 170 ~~~~v~i~ 177 (280)
+.|.+++.
T Consensus 86 ~~d~I~IE 93 (158)
T cd03112 86 AFDRIVIE 93 (158)
T ss_pred CCCEEEEE
Confidence 56777777
No 134
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=44.94 E-value=2.4e+02 Score=25.46 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=26.2
Q ss_pred CCcEEEEEe--c-CCCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 170 GSKWLVLRF--G-MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 170 ~~~~v~i~~--~-~~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.++|++++ + ......+.++.+.+++.|..+++|-.
T Consensus 135 ~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t 173 (377)
T TIGR01324 135 NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNT 173 (377)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECC
Confidence 466777772 1 12456677888889999999999975
No 135
>PRK07582 cystathionine gamma-lyase; Validated
Probab=44.73 E-value=1.7e+02 Score=26.23 Aligned_cols=55 Identities=16% Similarity=0.015 Sum_probs=28.4
Q ss_pred CceeecCchHHHHHHHHHhhcCC-cEEEEEeecCChhHHHHHHHHHhCCCccceeee
Q 023557 73 PIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM 128 (280)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~~lG~-~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~ 128 (280)
......+|+.++.+...+. ++. +..++..-+-...-..+...++..|+.+..+..
T Consensus 67 ~~v~~~sG~~Ai~~~l~al-l~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~ 122 (366)
T PRK07582 67 EALVFPSGMAAITAVLRAL-LRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPT 122 (366)
T ss_pred CEEEECCHHHHHHHHHHHh-cCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECC
Confidence 4556667777666555552 443 334443322222223334456777887766543
No 136
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=43.34 E-value=2e+02 Score=26.15 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=21.2
Q ss_pred CCcEEEEEec--C-CCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 170 GSKWLVLRFG--M-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 170 ~~~~v~i~~~--~-~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.++|++... . ...--+.++.+.+++.|+.+++|-.
T Consensus 149 ~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t 187 (398)
T PRK08249 149 GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNT 187 (398)
T ss_pred CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECC
Confidence 4567776521 1 0111245567777888888888875
No 137
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=41.95 E-value=1.1e+02 Score=20.88 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHH
Q 023557 183 FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA 237 (280)
Q Consensus 183 ~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~ 237 (280)
.+...++.+..++.|..+.+|.....+ ...+........+.+++++++|..
T Consensus 15 ~~~a~~l~~~L~~~gi~v~~d~~~~~~----~k~~~~a~~~g~p~~iiiG~~e~~ 65 (94)
T PF03129_consen 15 IEYAQELANKLRKAGIRVELDDSDKSL----GKQIKYADKLGIPFIIIIGEKELE 65 (94)
T ss_dssp HHHHHHHHHHHHHTTSEEEEESSSSTH----HHHHHHHHHTTESEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCch----hHHHHHHhhcCCeEEEEECchhHh
Confidence 355678888889999999999866533 333333222136788999999886
No 138
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=41.93 E-value=62 Score=27.10 Aligned_cols=105 Identities=13% Similarity=0.110 Sum_probs=55.5
Q ss_pred EEEeecCChhHHHHHHHHHhCCCccceeeeCCCCce----------eE-EEEEcCCC-ceeeeecCCcCCCCCcccCccc
Q 023557 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTG----------QC-VCLVDASG-NRTMRPCLSNAVKIQADELIAE 166 (280)
Q Consensus 99 ~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~----------~~-~~~~~~~g-~r~~~~~~~~~~~~~~~~l~~~ 166 (280)
.++-+|....|+.+.+.+++.-+++..+...+.... .+ ..-++ +. .+.-+....+... -..+.-.+
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~id-e~~~~~DlvVEaAS~~-Av~e~~~~ 79 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDID-ELIAEVDLVVEAASPE-AVREYVPK 79 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHH-HHhhccceeeeeCCHH-HHHHHhHH
Confidence 367788889999999998876455554443321100 00 00011 11 0000000011110 01111123
Q ss_pred cc-CCCcEEEEE-ecCCCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 167 DV-KGSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 167 ~~-~~~~~v~i~-~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
.+ ...|++++| ..+.++....++.+.++..+.++.+=.+
T Consensus 80 ~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSG 120 (255)
T COG1712 80 ILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSG 120 (255)
T ss_pred HHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCc
Confidence 44 458999999 4445777777887888888888776554
No 139
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=41.64 E-value=1e+02 Score=22.53 Aligned_cols=66 Identities=18% Similarity=0.055 Sum_probs=39.0
Q ss_pred ccCCCcEEEEEec--CCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHH
Q 023557 167 DVKGSKWLVLRFG--MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA 237 (280)
Q Consensus 167 ~~~~~~~v~i~~~--~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~ 237 (280)
++...+++++... ........++....++.|..+.+|.. ..+..++ ...-+.....++++.+.|..
T Consensus 23 ~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~-~sl~kql----k~A~k~g~~~~iiiG~~e~~ 90 (121)
T cd00858 23 ALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS-GSIGRRY----ARQDEIGTPFCVTVDFDTLE 90 (121)
T ss_pred CcCCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC-CCHHHHH----HHhHhcCCCEEEEECcCchh
Confidence 4556677766633 11234556777777888999999987 5332222 22211124567777777764
No 140
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=41.54 E-value=2.1e+02 Score=25.22 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=48.4
Q ss_pred CcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEE
Q 023557 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174 (280)
Q Consensus 95 ~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v 174 (280)
.++.++|.-| ..|..+.+.|++.. ++........ .+. .+. ..++.++++|++
T Consensus 3 ~~VaIvGAtG--y~G~eLlrlL~~hp-~~~l~~~~s~-----------~~~-----------~~~---~~~~~~~~~Dvv 54 (313)
T PRK11863 3 PKVFIDGEAG--TTGLQIRERLAGRS-DIELLSIPEA-----------KRK-----------DAA---ARRELLNAADVA 54 (313)
T ss_pred cEEEEECCCC--HHHHHHHHHHhcCC-CeEEEEEecC-----------CCC-----------ccc---CchhhhcCCCEE
Confidence 4566777766 46999999998765 2111111100 111 000 112344678988
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 175 VLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 175 ~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
++. .+.....++...+.+.|+ .++|+++.
T Consensus 55 Fla---lp~~~s~~~~~~~~~~g~-~VIDlSad 83 (313)
T PRK11863 55 ILC---LPDDAAREAVALIDNPAT-RVIDASTA 83 (313)
T ss_pred EEC---CCHHHHHHHHHHHHhCCC-EEEECChh
Confidence 887 356777788887777776 57999875
No 141
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=41.46 E-value=2.1e+02 Score=25.42 Aligned_cols=91 Identities=19% Similarity=0.277 Sum_probs=49.3
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeee--CCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM--KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~--~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v 174 (280)
+.++|.-| ..|..+.+.|.+.+.....+.. .....+..+.+ .+.. +...+++.+.++++|++
T Consensus 2 VaIvGAtG--~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~---~~~~-----------~~~~~~~~~~~~~~D~v 65 (339)
T TIGR01296 2 VAIVGATG--AVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTF---KGKE-----------LEVNEAKIESFEGIDIA 65 (339)
T ss_pred EEEEcCCC--HHHHHHHHHHHhCCCChhhEEEEeccccCCCeeee---CCee-----------EEEEeCChHHhcCCCEE
Confidence 44555554 5799999999886555433321 11111221111 1111 11111222345788999
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 175 VLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 175 ~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
+++. +.....++++.+.+.|+ +++|.++.
T Consensus 66 ~~a~---g~~~s~~~a~~~~~~G~-~VID~ss~ 94 (339)
T TIGR01296 66 LFSA---GGSVSKEFAPKAAKCGA-IVIDNTSA 94 (339)
T ss_pred EECC---CHHHHHHHHHHHHHCCC-EEEECCHH
Confidence 9883 34455666666667787 68999874
No 142
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=41.45 E-value=2.7e+02 Score=25.06 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=23.5
Q ss_pred CCcEEEEEec--C-CCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 170 GSKWLVLRFG--M-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 170 ~~~~v~i~~~--~-~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.++|+++.. . ....-+.++.+.+++.|..+++|-.
T Consensus 131 ~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a 169 (378)
T TIGR01329 131 KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNT 169 (378)
T ss_pred CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECC
Confidence 4567777721 1 1122356777888889999999975
No 143
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=41.43 E-value=2e+02 Score=23.77 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=32.7
Q ss_pred cCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 168 ~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
-..+||+.+... .+..+....++.|++.|+.+.+|+-+.
T Consensus 78 ~aGAd~~tV~g~-A~~~TI~~~i~~A~~~~~~v~iDl~~~ 116 (217)
T COG0269 78 EAGADWVTVLGA-ADDATIKKAIKVAKEYGKEVQIDLIGV 116 (217)
T ss_pred HcCCCEEEEEec-CCHHHHHHHHHHHHHcCCeEEEEeecC
Confidence 357899988854 378899999999999999999998543
No 144
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=40.97 E-value=1.8e+02 Score=22.87 Aligned_cols=97 Identities=23% Similarity=0.356 Sum_probs=57.6
Q ss_pred HHHHHHHHhCCCccceeeeCC--C-CceeEEE-EEc-CCCceeeee-cCCc---CCCCCcccCcc-------cccCCCcE
Q 023557 110 QLFVSNMQFSGVDVSRLRMKR--G-PTGQCVC-LVD-ASGNRTMRP-CLSN---AVKIQADELIA-------EDVKGSKW 173 (280)
Q Consensus 110 ~~i~~~L~~~gV~~~~v~~~~--~-~T~~~~~-~~~-~~g~r~~~~-~~~~---~~~~~~~~l~~-------~~~~~~~~ 173 (280)
..+.+.|+..|+.+..+.... . ....|-+ +.+ .+|.+.-++ ..|. ...+++.-+.. .+-+.+|.
T Consensus 17 ~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~~~La~A~~~l~~al~~~~DL 96 (159)
T PF10649_consen 17 AAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDLGPGSRGCRLDPGALAEASAALRRALAEGADL 96 (159)
T ss_pred HHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeeccCCCCcccccCHHHHHHHHHHHHHHHhcCCCE
Confidence 445667888899988876543 1 2222222 222 367665433 2332 34567665542 33456999
Q ss_pred EEEE-ecCC--CHHHHHHHHHHHHHCCCeEEEECCC
Q 023557 174 LVLR-FGMF--NFEVIQAAIRIAKQEGLSVSMDLAS 206 (280)
Q Consensus 174 v~i~-~~~~--~~~~~~~~~~~a~~~g~~v~~D~~~ 206 (280)
++++ |... .-.-+...+..+-..|++|..-.+.
T Consensus 97 livNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~ 132 (159)
T PF10649_consen 97 LIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPP 132 (159)
T ss_pred EEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECH
Confidence 9999 6531 1223556667777889999888764
No 145
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=40.22 E-value=3e+02 Score=25.40 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=15.3
Q ss_pred HHHHHHHHHHCCCeEEEECC
Q 023557 186 IQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 186 ~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.++.+.+++.|+.+++|-.
T Consensus 174 i~~I~~la~~~gi~livD~t 193 (437)
T PRK05613 174 IPAVAEVAHRNQVPLIVDNT 193 (437)
T ss_pred HHHHHHHHHHcCCeEEEECC
Confidence 55666777788888888876
No 146
>PRK08818 prephenate dehydrogenase; Provisional
Probab=39.99 E-value=2.3e+02 Score=25.62 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=46.7
Q ss_pred EEeecC-ChhHHHHHHHHHhC-CCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEE
Q 023557 100 IGAYGD-DQQGQLFVSNMQFS-GVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLR 177 (280)
Q Consensus 100 ~~~vG~-D~~g~~i~~~L~~~-gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~ 177 (280)
++.+|- .-.|.++.+.|++. +..+.. +|.. +. ...+ ..+.++++|+|+++
T Consensus 7 I~IIGl~GliGgslA~alk~~~~~~V~g--------------~D~~-d~---------~~~~----~~~~v~~aDlVila 58 (370)
T PRK08818 7 VGIVGSAGAYGRWLARFLRTRMQLEVIG--------------HDPA-DP---------GSLD----PATLLQRADVLIFS 58 (370)
T ss_pred EEEECCCCHHHHHHHHHHHhcCCCEEEE--------------EcCC-cc---------ccCC----HHHHhcCCCEEEEe
Confidence 556666 78999999999974 332211 1110 00 0001 12457889999999
Q ss_pred ecCCCHHHHHHHHHHHHH-----CCCeEEEECCChH
Q 023557 178 FGMFNFEVIQAAIRIAKQ-----EGLSVSMDLASFE 208 (280)
Q Consensus 178 ~~~~~~~~~~~~~~~a~~-----~g~~v~~D~~~~~ 208 (280)
+|.....++++.... ..-.++.|.++..
T Consensus 59 ---vPv~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK 91 (370)
T PRK08818 59 ---APIRHTAALIEEYVALAGGRAAGQLWLDVTSIK 91 (370)
T ss_pred ---CCHHHHHHHHHHHhhhhcCCCCCeEEEECCCCc
Confidence 466666666666543 2346889998753
No 147
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=39.14 E-value=1.8e+02 Score=24.01 Aligned_cols=46 Identities=15% Similarity=0.055 Sum_probs=32.3
Q ss_pred CceeecCchHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCc
Q 023557 73 PIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVD 122 (280)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~ 122 (280)
++-..-.|+|.++|+ ||+ +..+++-+=... ...+.-++.|+..|+.
T Consensus 75 ~VLEIGtGsGY~aAv-la~-l~~~V~siEr~~--~L~~~A~~~L~~lg~~ 120 (209)
T COG2518 75 RVLEIGTGSGYQAAV-LAR-LVGRVVSIERIE--ELAEQARRNLETLGYE 120 (209)
T ss_pred eEEEECCCchHHHHH-HHH-HhCeEEEEEEcH--HHHHHHHHHHHHcCCC
Confidence 455667799988887 675 877666665554 4566777778888874
No 148
>PRK15447 putative protease; Provisional
Probab=38.89 E-value=1.4e+02 Score=26.08 Aligned_cols=70 Identities=10% Similarity=-0.033 Sum_probs=42.6
Q ss_pred CCCcEEEEE---ecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCce-EEEcCHHHHHHH
Q 023557 169 KGSKWLVLR---FGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVD-LCFANEDEAAEL 239 (280)
Q Consensus 169 ~~~~~v~i~---~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~d-il~~N~~E~~~l 239 (280)
+.+|.||++ ++. ...+.+.++++.+++.|+++.+-+..-...+...+.+.+++.. ..| ++.-|-.++..+
T Consensus 27 ~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~-~~~~v~v~d~g~l~~~ 103 (301)
T PRK15447 27 SPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVEN-GEFLVEANDLGAVRLL 103 (301)
T ss_pred CCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhc-CCCEEEEeCHHHHHHH
Confidence 379999998 222 4678889999999999999988553211001222344555552 455 444566555433
No 149
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=38.44 E-value=1.2e+02 Score=23.43 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=55.8
Q ss_pred CChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEEecC--CC
Q 023557 105 DDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGM--FN 182 (280)
Q Consensus 105 ~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~--~~ 182 (280)
+...|+.+.+.|.+.|.++..+.+.+.+... ...-.++. + ...+++.+ .+.++++|+|+..... ..
T Consensus 7 tG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-------~~~~~~~~--~--d~~d~~~~-~~al~~~d~vi~~~~~~~~~ 74 (183)
T PF13460_consen 7 TGFVGRALAKQLLRRGHEVTALVRSPSKAED-------SPGVEIIQ--G--DLFDPDSV-KAALKGADAVIHAAGPPPKD 74 (183)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-------CTTEEEEE--S--CTTCHHHH-HHHHTTSSEEEECCHSTTTH
T ss_pred CChHHHHHHHHHHHCCCEEEEEecCchhccc-------ccccccce--e--eehhhhhh-hhhhhhcchhhhhhhhhccc
Confidence 4679999999999999877766665432221 11222221 1 11222222 3467899999888321 23
Q ss_pred HHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 183 FEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 183 ~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
.+.+..+++.+++.+++-++-+++.
T Consensus 75 ~~~~~~~~~a~~~~~~~~~v~~s~~ 99 (183)
T PF13460_consen 75 VDAAKNIIEAAKKAGVKRVVYLSSA 99 (183)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEET
T ss_pred ccccccccccccccccccceeeecc
Confidence 6677888888888888666655543
No 150
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=38.36 E-value=1.5e+02 Score=23.92 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=37.5
Q ss_pred cCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcC
Q 023557 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFAN 232 (280)
Q Consensus 168 ~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N 232 (280)
-.++|++.+.+. .+.....++++.+++.|+++.+++..+. ...+....+... .+|+++.+
T Consensus 74 ~~Gad~i~vh~~-~~~~~~~~~i~~~~~~g~~~~~~~~~~~---t~~~~~~~~~~~-g~d~v~~~ 133 (206)
T TIGR03128 74 AAGADIVTVLGV-ADDATIKGAVKAAKKHGKEVQVDLINVK---DKVKRAKELKEL-GADYIGVH 133 (206)
T ss_pred HcCCCEEEEecc-CCHHHHHHHHHHHHHcCCEEEEEecCCC---ChHHHHHHHHHc-CCCEEEEc
Confidence 346888887744 2445567888999999999998853221 111233333331 68888875
No 151
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=37.50 E-value=66 Score=29.50 Aligned_cols=131 Identities=18% Similarity=0.232 Sum_probs=71.7
Q ss_pred HHHHHHh-hcC-CcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceee--eecCCcCCCCCc
Q 023557 85 TIRGLSV-GFG-VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTM--RPCLSNAVKIQA 160 (280)
Q Consensus 85 ~a~~la~-~lG-~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~--~~~~~~~~~~~~ 160 (280)
+|+.+++ .+| ..-.-+-.+|..+.|+.+.+.|.+.|+.. +.+.. +|. +|.. ....+. .-...
T Consensus 164 aAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~--i~IaN-RT~----------erA~~La~~~~~-~~~~l 229 (414)
T COG0373 164 AAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKK--ITIAN-RTL----------ERAEELAKKLGA-EAVAL 229 (414)
T ss_pred HHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCE--EEEEc-CCH----------HHHHHHHHHhCC-eeecH
Confidence 4444443 266 45555667788889999999999999843 33221 221 1111 001121 11122
Q ss_pred ccCcccccCCCcEEEEEecC----CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHH
Q 023557 161 DELIAEDVKGSKWLVLRFGM----FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (280)
Q Consensus 161 ~~l~~~~~~~~~~v~i~~~~----~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~ 236 (280)
+++ .+.+.++|+|+.+++. ++.+.+...++..+. .+++|++-|. +..+..-+ ..++...|.+++
T Consensus 230 ~el-~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~---~livDiavPR---die~~v~~-----l~~v~l~~iDDL 297 (414)
T COG0373 230 EEL-LEALAEADVVISSTSAPHPIITREMVERALKIRKR---LLIVDIAVPR---DVEPEVGE-----LPNVFLYTIDDL 297 (414)
T ss_pred HHH-HHhhhhCCEEEEecCCCccccCHHHHHHHHhcccC---eEEEEecCCC---CCCccccC-----cCCeEEEehhhH
Confidence 333 2578899999998332 345555555443222 6999998651 22222111 456777777777
Q ss_pred HHHhc
Q 023557 237 AELVR 241 (280)
Q Consensus 237 ~~l~~ 241 (280)
..+..
T Consensus 298 ~~iv~ 302 (414)
T COG0373 298 EEIVE 302 (414)
T ss_pred HHHHH
Confidence 76654
No 152
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=37.41 E-value=71 Score=22.23 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=31.2
Q ss_pred CchHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccc
Q 023557 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVS 124 (280)
Q Consensus 79 GG~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~ 124 (280)
+|.+...+..+.. .|.++.+++.+|.. ....|++.||...
T Consensus 47 ~~~~~~~~~~l~~-~~v~~vi~~~iG~~-----a~~~l~~~gI~v~ 86 (102)
T cd00562 47 GGEGKLAARLLAL-EGCDAVLVGGIGGP-----AAAKLEAAGIKPI 86 (102)
T ss_pred CccchHHHHHHHH-CCCcEEEEcccCcc-----HHHHHHHcCCEEE
Confidence 3566778888885 99999999998866 5566788898763
No 153
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=37.28 E-value=68 Score=23.47 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=24.1
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCeEEEEC
Q 023557 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDL 204 (280)
Q Consensus 174 v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~ 204 (280)
+++|++ ++.+.++++++.+.+.|..++|--
T Consensus 2 iFvS~S-MP~~~L~~l~~~a~~~~~~~V~RG 31 (113)
T PF09673_consen 2 IFVSFS-MPDASLRNLLKQAERAGVVVVFRG 31 (113)
T ss_pred EEEECC-CCHHHHHHHHHHHHhCCcEEEEEC
Confidence 456655 488999999999999998888875
No 154
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=36.75 E-value=1.4e+02 Score=25.31 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHH------HHhcCC-------C-CCcH
Q 023557 183 FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA------ELVRGE-------E-NADS 248 (280)
Q Consensus 183 ~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~------~l~~~~-------~-~~~~ 248 (280)
.+.+..+.+.+++.|.+++-++.... .+..+.+ .+|++++-..+.. .+.+.. . ..++
T Consensus 65 ~~gl~~L~~~~~~~Gl~~~Tev~d~~-------~v~~~~e--~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~ 135 (250)
T PRK13397 65 LQGIRYLHEVCQEFGLLSVSEIMSER-------QLEEAYD--YLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATI 135 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCCHH-------HHHHHHh--cCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCH
Confidence 46677777778899999999987642 2222223 6788877644432 222211 0 1233
Q ss_pred H---HHHHHHh-cCCCEEEEEc-CCCc
Q 023557 249 E---AALEFLA-KRCQWAVVTL-GPNG 270 (280)
Q Consensus 249 ~---~~~~~l~-~~~~~vvvT~-G~~G 270 (280)
+ .+++.+. .|.+.++++. |-.+
T Consensus 136 ~e~~~A~e~i~~~Gn~~i~L~eRg~~~ 162 (250)
T PRK13397 136 EEYLGALSYLQDTGKSNIILCERGVRG 162 (250)
T ss_pred HHHHHHHHHHHHcCCCeEEEEccccCC
Confidence 3 3555554 4666666665 7644
No 155
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=36.63 E-value=2.2e+02 Score=22.64 Aligned_cols=100 Identities=15% Similarity=0.084 Sum_probs=53.0
Q ss_pred EEEEeecCChhHHHHHH--HHHhCCCccceeeeCCCCceeEE-EEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEE
Q 023557 98 GLIGAYGDDQQGQLFVS--NMQFSGVDVSRLRMKRGPTGQCV-CLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174 (280)
Q Consensus 98 ~~~~~vG~D~~g~~i~~--~L~~~gV~~~~v~~~~~~T~~~~-~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v 174 (280)
...|.+......+.++. .++..|.++..+...- .|+... .+.+.+|...-... ...-...++......+.|+|
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~-D~R~~~~~I~s~~g~~~~~~~---~~~~~~~~~~~~~~~~~dvI 80 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAI-DTRYGEDKIVSHDGISLEAIV---DPIDNLFEIIDILENDYDVI 80 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEEST-SCCCCSSEEEHTTSCEEEEES---SEESSGGGGGGGCCTTCSEE
T ss_pred EEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecc-cCcCCCCeEEecCCCcccccc---cchhhHHHHHHHhccCCCEE
Confidence 45677777766666664 3566787776555432 232211 34444554332210 01111222222233349999
Q ss_pred EEE-ecCCCHHHHHHHHHHHHHCCCeEEE
Q 023557 175 VLR-FGMFNFEVIQAAIRIAKQEGLSVSM 202 (280)
Q Consensus 175 ~i~-~~~~~~~~~~~~~~~a~~~g~~v~~ 202 (280)
.++ ..+.+ +.+.++++.+...|+.|++
T Consensus 81 ~IDEaQFf~-~~i~~l~~~~~~~g~~Vi~ 108 (176)
T PF00265_consen 81 GIDEAQFFD-EQIVQLVEILANKGIPVIC 108 (176)
T ss_dssp EESSGGGST-TTHHHHHHHHHHTT-EEEE
T ss_pred EEechHhhH-HHHHHHHHHHHhCCCeEEE
Confidence 999 44456 4556788888888988874
No 156
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=36.58 E-value=3.1e+02 Score=24.89 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=22.8
Q ss_pred CCCcEEEEEec--C-CCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 169 KGSKWLVLRFG--M-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 169 ~~~~~v~i~~~--~-~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
++.++|+++.. . ...--+.++.+.++++|..+++|-.
T Consensus 149 ~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a 188 (398)
T PRK07504 149 PNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNV 188 (398)
T ss_pred cCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECC
Confidence 35677877721 1 0111245666777888888888875
No 157
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=36.22 E-value=87 Score=23.66 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=20.5
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCeEEEEC
Q 023557 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDL 204 (280)
Q Consensus 174 v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~ 204 (280)
+++|++ +|.+.+.++++.+.+.|.++++--
T Consensus 3 vFvS~S-MP~~~Lk~l~~~a~~~g~~~VlRG 32 (130)
T TIGR02742 3 VFVSFS-MPEPLLKQLLDQAEALGAPLVIRG 32 (130)
T ss_pred EEEEcC-CCHHHHHHHHHHHHHhCCeEEEeC
Confidence 444554 477777777777777777777664
No 158
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=36.11 E-value=64 Score=25.94 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=11.1
Q ss_pred cCchHHHHHHHHHhhcCCcEEEEEe
Q 023557 78 AGGSVTNTIRGLSVGFGVPCGLIGA 102 (280)
Q Consensus 78 ~GG~~~N~a~~la~~lG~~~~~~~~ 102 (280)
.|-.|...|..+.+ .|++|+++..
T Consensus 28 SG~~G~~lA~~~~~-~Ga~V~li~g 51 (185)
T PF04127_consen 28 SGKMGAALAEEAAR-RGAEVTLIHG 51 (185)
T ss_dssp -SHHHHHHHHHHHH-TT-EEEEEE-
T ss_pred cCHHHHHHHHHHHH-CCCEEEEEec
Confidence 44455555555553 5555555543
No 159
>PRK13018 cell division protein FtsZ; Provisional
Probab=35.09 E-value=1.8e+02 Score=26.46 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=24.3
Q ss_pred ceeecCchHHHHHHHHHhhcCCcEEEEEeecCCh
Q 023557 74 IKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQ 107 (280)
Q Consensus 74 ~~~~~GG~~~N~a~~la~~lG~~~~~~~~vG~D~ 107 (280)
...-.||+|.|+.-.+.+ .|.+-.-+-++-.|.
T Consensus 32 ~ViGvGGaG~N~v~~m~~-~~~~~v~~iaiNTD~ 64 (378)
T PRK13018 32 VVVGCGGAGNNTINRLYE-IGIEGAETIAINTDA 64 (378)
T ss_pred EEEEeCCcHHHHHHHHHH-cCCCCceEEEEECCH
Confidence 345679999999999996 887644445567774
No 160
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=34.89 E-value=2.3e+02 Score=24.94 Aligned_cols=65 Identities=15% Similarity=0.067 Sum_probs=34.6
Q ss_pred CCcEEEEE-ecCCCHHHHHHHHH---HH----HHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHH
Q 023557 170 GSKWLVLR-FGMFNFEVIQAAIR---IA----KQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (280)
Q Consensus 170 ~~~~v~i~-~~~~~~~~~~~~~~---~a----~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~ 236 (280)
+.|.+++. .+...+..+.+.+. .. +=.++..++|.............+.+-+. .+|+|.+|..+.
T Consensus 90 ~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~--~AD~IvlnK~Dl 162 (318)
T PRK11537 90 QFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG--YADRILLTKTDV 162 (318)
T ss_pred CCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH--hCCEEEEecccc
Confidence 48999999 44444544444331 11 11356677888543211111112222344 799999998764
No 161
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=34.78 E-value=1.7e+02 Score=20.80 Aligned_cols=95 Identities=12% Similarity=0.134 Sum_probs=52.3
Q ss_pred eecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEEecCC
Q 023557 102 AYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMF 181 (280)
Q Consensus 102 ~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~ 181 (280)
.+|.+..|+.+.+.|++.+.++..+...+... - ...+.|-..+ + |.. .+++.+...-+++++.+++...
T Consensus 3 I~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~---~-~~~~~~~~~i--~-gd~--~~~~~l~~a~i~~a~~vv~~~~-- 71 (116)
T PF02254_consen 3 IIGYGRIGREIAEQLKEGGIDVVVIDRDPERV---E-ELREEGVEVI--Y-GDA--TDPEVLERAGIEKADAVVILTD-- 71 (116)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSHHHH---H-HHHHTTSEEE--E-S-T--TSHHHHHHTTGGCESEEEEESS--
T ss_pred EEcCCHHHHHHHHHHHhCCCEEEEEECCcHHH---H-HHHhcccccc--c-ccc--hhhhHHhhcCccccCEEEEccC--
Confidence 47888999999999999775554443332110 0 0112332222 1 221 2334444456788999888854
Q ss_pred CHHHHHHHHHHHHHC--CCeEEEECCCh
Q 023557 182 NFEVIQAAIRIAKQE--GLSVSMDLASF 207 (280)
Q Consensus 182 ~~~~~~~~~~~a~~~--g~~v~~D~~~~ 207 (280)
+.+....++..+++. ..+++.-....
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 72 DDEENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp SHHHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 344455555666652 35777666554
No 162
>PRK05939 hypothetical protein; Provisional
Probab=34.08 E-value=3.6e+02 Score=24.46 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=24.0
Q ss_pred CCcEEEEEec--C-CCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 170 GSKWLVLRFG--M-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 170 ~~~~v~i~~~--~-~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.++|++... . ....-+.++.+.++++|+.+++|-.
T Consensus 131 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t 169 (397)
T PRK05939 131 NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNT 169 (397)
T ss_pred CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECC
Confidence 4567777621 1 1234467778888888999999974
No 163
>PLN02242 methionine gamma-lyase
Probab=33.94 E-value=3.3e+02 Score=24.94 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=19.6
Q ss_pred CcEEEEEec--C-CCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 171 SKWLVLRFG--M-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 171 ~~~v~i~~~--~-~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
.++|++... . .....+.++.+.++++|..+++|-.
T Consensus 164 tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea 201 (418)
T PLN02242 164 TKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNT 201 (418)
T ss_pred CEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECC
Confidence 456666621 1 1122345666667777777777754
No 164
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=33.41 E-value=1.3e+02 Score=25.65 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=35.2
Q ss_pred chHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC
Q 023557 80 GSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG 131 (280)
Q Consensus 80 G~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~ 131 (280)
-.++..|--|.. +|.++.....||||. +.|.+.|+..-=+.+.+...++
T Consensus 21 tNa~~la~~L~~-~G~~v~~~~~VgD~~--~~I~~~l~~a~~r~D~vI~tGG 69 (255)
T COG1058 21 TNAAFLADELTE-LGVDLARITTVGDNP--DRIVEALREASERADVVITTGG 69 (255)
T ss_pred chHHHHHHHHHh-cCceEEEEEecCCCH--HHHHHHHHHHHhCCCEEEECCC
Confidence 345678888885 999999999999984 6666666654333556666654
No 165
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=32.82 E-value=3.9e+02 Score=24.41 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=14.7
Q ss_pred HHHHHHHHHHCCCeEEEECC
Q 023557 186 IQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 186 ~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.++.+.+++.|+.+++|-.
T Consensus 161 l~~I~~la~~~~i~livD~t 180 (418)
T TIGR01326 161 IEAIAEVAHAHGVPLIVDNT 180 (418)
T ss_pred HHHHHHHHHHcCCEEEEECC
Confidence 45666777788888888864
No 166
>PLN00203 glutamyl-tRNA reductase
Probab=32.18 E-value=77 Score=30.08 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=25.7
Q ss_pred HHHHHHHhh-cC---CcEEEEEeecCChhHHHHHHHHHhCCC
Q 023557 84 NTIRGLSVG-FG---VPCGLIGAYGDDQQGQLFVSNMQFSGV 121 (280)
Q Consensus 84 N~a~~la~~-lG---~~~~~~~~vG~D~~g~~i~~~L~~~gV 121 (280)
.+|+.++.+ +| ....=+..+|....|+.+.+.|...|+
T Consensus 249 s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~ 290 (519)
T PLN00203 249 SAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGC 290 (519)
T ss_pred HHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCC
Confidence 455555532 44 333446667778899999999988775
No 167
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=31.94 E-value=3.6e+02 Score=24.32 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=24.7
Q ss_pred CCCcEEEEEec--C-CCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 169 KGSKWLVLRFG--M-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 169 ~~~~~v~i~~~--~-~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
++.++|+++.. . .....+.++.+.+++.|..+++|-.
T Consensus 145 ~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a 184 (388)
T PRK07811 145 PRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNT 184 (388)
T ss_pred cCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECC
Confidence 35677877621 1 1234466777788888999999974
No 168
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=31.61 E-value=1.1e+02 Score=30.32 Aligned_cols=71 Identities=10% Similarity=0.198 Sum_probs=53.9
Q ss_pred ccCcccccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHH
Q 023557 161 DELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAEL 239 (280)
Q Consensus 161 ~~l~~~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l 239 (280)
-++.+...-++|.|.+-...++.+.+.++++.+++.|..+.+..... +++...+.. .+++|=+|-..+..|
T Consensus 124 ~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~-------~el~~a~~~-ga~iiGINnRdL~tf 194 (695)
T PRK13802 124 YQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTR-------EEIERAIAA-GAKVIGINARNLKDL 194 (695)
T ss_pred HHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCH-------HHHHHHHhC-CCCEEEEeCCCCccc
Confidence 34445567789998888554577889999999999999999999764 455555552 789998887776654
No 169
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=31.40 E-value=3e+02 Score=24.42 Aligned_cols=37 Identities=16% Similarity=0.039 Sum_probs=25.9
Q ss_pred ccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 167 ~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
.+.++|++.+.. +.....++.+.+.+.|++ ++|.++.
T Consensus 70 ~~~~~DvVf~a~---p~~~s~~~~~~~~~~G~~-VIDlsg~ 106 (341)
T TIGR00978 70 ASKDVDIVFSAL---PSEVAEEVEPKLAEAGKP-VFSNASN 106 (341)
T ss_pred HhccCCEEEEeC---CHHHHHHHHHHHHHCCCE-EEECChh
Confidence 456789888873 455666666777777876 5888764
No 170
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=31.17 E-value=4.1e+02 Score=24.19 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=48.9
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCccccc--CCCcEE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDV--KGSKWL 174 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~--~~~~~v 174 (280)
-.++..-| .||+.+.+.++.+|.++..+....+ ..++++++.+.+- .+.+.|
T Consensus 82 kVLv~~nG--~FG~R~~~ia~~~g~~v~~~~~~wg------------------------~~v~p~~v~~~L~~~~~~~~V 135 (383)
T COG0075 82 KVLVVVNG--KFGERFAEIAERYGAEVVVLEVEWG------------------------EAVDPEEVEEALDKDPDIKAV 135 (383)
T ss_pred eEEEEeCC--hHHHHHHHHHHHhCCceEEEeCCCC------------------------CCCCHHHHHHHHhcCCCccEE
Confidence 44444444 6999999999999998765544322 1233444432111 233444
Q ss_pred EEEecCCC---HHHHHHHHHHHHHCCCeEEEECC
Q 023557 175 VLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 175 ~i~~~~~~---~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
.+.+..++ ..-+.++.+.++++|..+++|--
T Consensus 136 ~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaV 169 (383)
T COG0075 136 AVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAV 169 (383)
T ss_pred EEEeccCcccccCcHHHHHHHHHHcCCEEEEEec
Confidence 44421111 22456778888899999999974
No 171
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=30.93 E-value=80 Score=26.45 Aligned_cols=41 Identities=15% Similarity=0.089 Sum_probs=32.4
Q ss_pred cCCCcEEEEEecC-CCHHHHHHHHHHHH-HCCCeEEEECCChH
Q 023557 168 VKGSKWLVLRFGM-FNFEVIQAAIRIAK-QEGLSVSMDLASFE 208 (280)
Q Consensus 168 ~~~~~~v~i~~~~-~~~~~~~~~~~~a~-~~g~~v~~D~~~~~ 208 (280)
..+.|.+.+..+. +..+.+.++++..+ +.+.++++-|++..
T Consensus 39 ~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~ 81 (240)
T COG1646 39 EAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPS 81 (240)
T ss_pred HcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChh
Confidence 4568999999432 56677888888888 88999999998764
No 172
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=30.72 E-value=1.2e+02 Score=25.36 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=32.2
Q ss_pred cCCCcEEEEEecC-CCHHHHHHHHHHHHHCCCeEEEECCChH
Q 023557 168 VKGSKWLVLRFGM-FNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (280)
Q Consensus 168 ~~~~~~v~i~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~ 208 (280)
....|.+.++.+. +..+.+.++++..|+...++++-|++..
T Consensus 30 ~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~ 71 (232)
T PRK04169 30 ESGTDAIIVGGSDGVTEENVDELVKAIKEYDLPVILFPGNIE 71 (232)
T ss_pred hcCCCEEEEcCCCccchHHHHHHHHHHhcCCCCEEEeCCCcc
Confidence 4568999999443 5677788888888888899999998653
No 173
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=30.59 E-value=83 Score=24.83 Aligned_cols=66 Identities=11% Similarity=0.163 Sum_probs=35.2
Q ss_pred CCcEEEEE-ecCCCHHHH----HHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHH
Q 023557 170 GSKWLVLR-FGMFNFEVI----QAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA 237 (280)
Q Consensus 170 ~~~~v~i~-~~~~~~~~~----~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~ 237 (280)
+.|++++. .+...+..+ ..+.+..+-.....++|........+....+.+-+. .+|++..|..+.-
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~--~ADvIvlnK~D~~ 154 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA--FADVIVLNKIDLV 154 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC--T-SEEEEE-GGGH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch--hcCEEEEeccccC
Confidence 57999999 443333333 111111222345667898654322333445566676 8999999987654
No 174
>smart00642 Aamy Alpha-amylase domain.
Probab=30.01 E-value=71 Score=25.11 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHCCCeEEEECCC
Q 023557 182 NFEVIQAAIRIAKQEGLSVSMDLAS 206 (280)
Q Consensus 182 ~~~~~~~~~~~a~~~g~~v~~D~~~ 206 (280)
..+.+.++++.++++|+.|++|+..
T Consensus 68 t~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 68 TMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECC
Confidence 4678899999999999999999864
No 175
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=29.58 E-value=1.6e+02 Score=18.91 Aligned_cols=45 Identities=7% Similarity=0.021 Sum_probs=29.0
Q ss_pred EEEEEeecCCh----hHHHHHHHHHhCCCccceeeeCCCCceeEEEEEc
Q 023557 97 CGLIGAYGDDQ----QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVD 141 (280)
Q Consensus 97 ~~~~~~vG~D~----~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~ 141 (280)
...++.+|++. ....+.+.|.+.||+...+.........++.+-+
T Consensus 2 ~a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~ 50 (66)
T cd04915 2 VAIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDR 50 (66)
T ss_pred EEEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEH
Confidence 45677777643 2446667789999998766665444566555544
No 176
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=29.56 E-value=1.5e+02 Score=26.31 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=15.3
Q ss_pred EEeecCChhHHHHHHHHHhCCCcc
Q 023557 100 IGAYGDDQQGQLFVSNMQFSGVDV 123 (280)
Q Consensus 100 ~~~vG~D~~g~~i~~~L~~~gV~~ 123 (280)
++.+|...||..+-..|.+.|=++
T Consensus 4 I~ViGaGswGTALA~~la~ng~~V 27 (329)
T COG0240 4 IAVIGAGSWGTALAKVLARNGHEV 27 (329)
T ss_pred EEEEcCChHHHHHHHHHHhcCCee
Confidence 456666667777777776666333
No 177
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=29.34 E-value=1.5e+02 Score=21.19 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCccceeeeC---CCCceeEEEEEcCCCceeeee
Q 023557 109 GQLFVSNMQFSGVDVSRLRMK---RGPTGQCVCLVDASGNRTMRP 150 (280)
Q Consensus 109 g~~i~~~L~~~gV~~~~v~~~---~~~T~~~~~~~~~~g~r~~~~ 150 (280)
=+...+.|++.|+........ .......+.+.|++|.+.-+.
T Consensus 82 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~ 126 (128)
T cd07242 82 VDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELV 126 (128)
T ss_pred HHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEE
Confidence 456777789999986654332 123456677789999877554
No 178
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=28.94 E-value=2e+02 Score=24.53 Aligned_cols=28 Identities=21% Similarity=0.100 Sum_probs=19.0
Q ss_pred cHHHHHHHHhcCCCEEEEEcCCCceEEE
Q 023557 247 DSEAALEFLAKRCQWAVVTLGPNGCIAK 274 (280)
Q Consensus 247 ~~~~~~~~l~~~~~~vvvT~G~~Ga~~~ 274 (280)
+.+++++.+.+..+.|+.|.|.+....|
T Consensus 116 d~~ea~~~~~~~~~rVflt~G~~~l~~f 143 (257)
T COG2099 116 DIEEAAEAAKQLGRRVFLTTGRQNLAHF 143 (257)
T ss_pred CHHHHHHHHhccCCcEEEecCccchHHH
Confidence 5556666666656888888888765433
No 179
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=28.79 E-value=2.2e+02 Score=26.00 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=28.9
Q ss_pred CCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCC
Q 023557 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLAS 206 (280)
Q Consensus 169 ~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~ 206 (280)
.++|++.+.+. ...+.+.+.++.+++.|+.+.+|...
T Consensus 249 aGAD~vTVH~e-a~~~ti~~ai~~akk~GikvgVD~ln 285 (391)
T PRK13307 249 ATADAVVISGL-APISTIEKAIHEAQKTGIYSILDMLN 285 (391)
T ss_pred cCCCEEEEecc-CCHHHHHHHHHHHHHcCCEEEEEEcC
Confidence 36788888754 25667888999999999999998543
No 180
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=28.74 E-value=4.6e+02 Score=24.03 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=23.5
Q ss_pred CCcEEEEEec--C-CCHHHHHHHHHHHHHCCCeEEEECCC
Q 023557 170 GSKWLVLRFG--M-FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (280)
Q Consensus 170 ~~~~v~i~~~--~-~~~~~~~~~~~~a~~~g~~v~~D~~~ 206 (280)
+.++|++... . ...--+.++.+.+++.|+.+++|-..
T Consensus 148 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~ 187 (427)
T PRK05994 148 RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTL 187 (427)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCc
Confidence 4677877621 1 01112457777788889999999753
No 181
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=28.61 E-value=84 Score=29.25 Aligned_cols=70 Identities=11% Similarity=0.154 Sum_probs=53.2
Q ss_pred cCcccccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHH
Q 023557 162 ELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAEL 239 (280)
Q Consensus 162 ~l~~~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l 239 (280)
++.+...-++|.+.+-...++.+.+.++++.|++.|....+..... +++...+.. .++++-.|-..+..+
T Consensus 124 QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~-------~El~~al~~-~a~iiGiNnRdL~t~ 193 (454)
T PRK09427 124 QIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNE-------EELERAIAL-GAKVIGINNRNLRDL 193 (454)
T ss_pred HHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCH-------HHHHHHHhC-CCCEEEEeCCCCccc
Confidence 3334566788888877544578889999999999999999999764 455555553 789999998877655
No 182
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=28.36 E-value=1.6e+02 Score=20.37 Aligned_cols=42 Identities=14% Similarity=0.227 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeee
Q 023557 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR 149 (280)
Q Consensus 108 ~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~ 149 (280)
.=+.+.+.|++.|+............+..+.+.||+|.+.-+
T Consensus 67 d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi 108 (113)
T cd08345 67 EFDEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLEL 108 (113)
T ss_pred HHHHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEE
Confidence 456678889999998653222222246677888999987644
No 183
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=27.58 E-value=1.3e+02 Score=24.75 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=25.6
Q ss_pred EEEEE-ecCCCHHHHHHHHHHHHHCCCeEEEEC
Q 023557 173 WLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDL 204 (280)
Q Consensus 173 ~v~i~-~~~~~~~~~~~~~~~a~~~g~~v~~D~ 204 (280)
+++|- ++ +|.+.+.+++..+++.|.++++--
T Consensus 92 ~~vFVSfS-MP~~sLk~Ll~qa~~~G~p~VlRG 123 (212)
T PRK13730 92 ALYFVSFS-IPEEGLKRMLGETRHYGIPATLRG 123 (212)
T ss_pred eEEEEEcC-CCHHHHHHHHHHHHHhCCcEEEeC
Confidence 44444 55 599999999999999999999875
No 184
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.57 E-value=1.1e+02 Score=19.02 Aligned_cols=44 Identities=7% Similarity=0.155 Sum_probs=27.3
Q ss_pred EEEEeecCCh-----hHHHHHHHHHhCCCccceeeeCCCCceeEEEEEc
Q 023557 98 GLIGAYGDDQ-----QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVD 141 (280)
Q Consensus 98 ~~~~~vG~D~-----~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~ 141 (280)
.+++.+|... ....+.+.|.+.||+...+.........++++-.
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~ 50 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAE 50 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeH
Confidence 4566666432 2345788899999999877654333555555543
No 185
>PRK07324 transaminase; Validated
Probab=27.55 E-value=4.4e+02 Score=23.42 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=24.9
Q ss_pred CCCcEEEEEe--c----CCCHHHHHHHHHHHHHCCCeEEEEC
Q 023557 169 KGSKWLVLRF--G----MFNFEVIQAAIRIAKQEGLSVSMDL 204 (280)
Q Consensus 169 ~~~~~v~i~~--~----~~~~~~~~~~~~~a~~~g~~v~~D~ 204 (280)
.+.++++++. + ..+.+.+.++++.+++++..++.|-
T Consensus 152 ~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De 193 (373)
T PRK07324 152 PNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDE 193 (373)
T ss_pred CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 3456777762 1 1356777888888888888888885
No 186
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=27.47 E-value=43 Score=22.97 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=32.4
Q ss_pred ecCchHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccc
Q 023557 77 IAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVS 124 (280)
Q Consensus 77 ~~GG~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~ 124 (280)
..+|.+...+..|.. .|.++.+++.+| +...+.|++.||.+-
T Consensus 37 ~~~~~~~~~~~~l~~-~~v~~li~~~iG-----~~~~~~L~~~gI~v~ 78 (94)
T PF02579_consen 37 EGGGGGDKIAKFLAE-EGVDVLICGGIG-----EGAFRALKEAGIKVY 78 (94)
T ss_dssp CSSCHSTHHHHHHHH-TTESEEEESCSC-----HHHHHHHHHTTSEEE
T ss_pred cccccchhHHHHHHH-cCCCEEEEeCCC-----HHHHHHHHHCCCEEE
Confidence 345777778888885 899999998886 446777888899764
No 187
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=27.46 E-value=2.1e+02 Score=26.24 Aligned_cols=59 Identities=10% Similarity=0.191 Sum_probs=36.9
Q ss_pred CCCcEEEEEe-cCC-C-HHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcC
Q 023557 169 KGSKWLVLRF-GMF-N-FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFAN 232 (280)
Q Consensus 169 ~~~~~v~i~~-~~~-~-~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N 232 (280)
+++|++++++ ... . .....++++++++.+.+|++--... ..+.+++.+.++ .+|+++.+
T Consensus 35 ~~aD~viinTC~v~~~a~~~~~~~i~~~~~~~~~vvvgGc~a---~~~pee~~~~~~--~vd~v~g~ 96 (430)
T TIGR01125 35 EDADYVIVNTCGFIEDARQESIDTIGELADAGKKVIVTGCLV---QRYKEELKEEIP--EVHAITGS 96 (430)
T ss_pred ccCCEEEEeCCCccchHHHHHHHHHHHHHhcCCCEEEECCcc---ccchHHHHhhCC--CCcEEECC
Confidence 4689999993 221 2 2335667777777788777654432 234555555454 78988866
No 188
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=27.43 E-value=3.5e+02 Score=23.84 Aligned_cols=38 Identities=8% Similarity=0.139 Sum_probs=27.7
Q ss_pred cccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 166 ~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
+.++++|++++.. +.+...++++.+.+.|+ .++|+|+.
T Consensus 45 ~~~~~~D~vFlal---p~~~s~~~~~~~~~~g~-~VIDlSad 82 (310)
T TIGR01851 45 KLLNAADVAILCL---PDDAAREAVSLVDNPNT-CIIDASTA 82 (310)
T ss_pred HhhcCCCEEEECC---CHHHHHHHHHHHHhCCC-EEEECChH
Confidence 3457789988883 56677777777777776 57999875
No 189
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=27.32 E-value=96 Score=28.17 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=32.7
Q ss_pred cccCcccccCCCcEEEEEec------CCCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 160 ADELIAEDVKGSKWLVLRFG------MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 160 ~~~l~~~~~~~~~~v~i~~~------~~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
.+++....-++.++++++++ ..+++.+.++.+.|+++++.++.|--
T Consensus 153 ~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEi 204 (393)
T COG0436 153 LEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEI 204 (393)
T ss_pred HHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehh
Confidence 34443333346788888832 14688899999999999999888863
No 190
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=27.24 E-value=4.7e+02 Score=23.59 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=22.2
Q ss_pred CCcEEEEEe--cCC-CHHHHHHHHHHHHHCCCeEEEECC
Q 023557 170 GSKWLVLRF--GMF-NFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 170 ~~~~v~i~~--~~~-~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.++|++.. +.. ..-.+.++.+.+++.|..+++|-.
T Consensus 137 ~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t 175 (385)
T PRK08574 137 RTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNT 175 (385)
T ss_pred CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECC
Confidence 456777762 110 011245677778888999999975
No 191
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=27.10 E-value=1.6e+02 Score=20.81 Aligned_cols=44 Identities=11% Similarity=-0.009 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeee
Q 023557 107 QQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRP 150 (280)
Q Consensus 107 ~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~ 150 (280)
..=+.+.+.|++.|+.......... ..+.++.+.|++|.+.-+.
T Consensus 72 ~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~ 116 (121)
T cd07266 72 EDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFY 116 (121)
T ss_pred HHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEE
Confidence 3445677788899998754311111 2346778899999876543
No 192
>PRK06234 methionine gamma-lyase; Provisional
Probab=26.77 E-value=4.8e+02 Score=23.60 Aligned_cols=18 Identities=17% Similarity=-0.069 Sum_probs=10.4
Q ss_pred CceeecCchHHHHHHHHH
Q 023557 73 PIKTIAGGSVTNTIRGLS 90 (280)
Q Consensus 73 ~~~~~~GG~~~N~a~~la 90 (280)
......+|.+++.+...+
T Consensus 81 ~~l~~~sG~~Ai~~al~~ 98 (400)
T PRK06234 81 AAVVAASGMGAISSSLWS 98 (400)
T ss_pred cEEEEcCHHHHHHHHHHH
Confidence 345566777666555444
No 193
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=26.71 E-value=2.8e+02 Score=26.42 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=59.4
Q ss_pred EEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEEec
Q 023557 100 IGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFG 179 (280)
Q Consensus 100 ~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~ 179 (280)
+-.+|.+..|+.+.+.|++.|.++.-+..++.... ...+ .|.+.+. +.. .+++.+...-++++|.+.+...
T Consensus 420 iiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~---~~~~-~g~~~i~---GD~--~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 420 ALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVD---ELRE-RGIRAVL---GNA--ANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred EEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHH---HHHH-CCCeEEE---cCC--CCHHHHHhcCccccCEEEEEcC
Confidence 34468888999999999999987644433321111 1111 3433332 221 1333344445678998888743
Q ss_pred CCCHHHHHHHHHHHHH--CCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHH
Q 023557 180 MFNFEVIQAAIRIAKQ--EGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (280)
Q Consensus 180 ~~~~~~~~~~~~~a~~--~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~ 236 (280)
+.+....++..+++ ...+++.=...+ +..+.+.+ + .+|.++.-+++.
T Consensus 491 --~~~~~~~iv~~~~~~~~~~~iiar~~~~----~~~~~l~~-~---Gad~vv~p~~~~ 539 (558)
T PRK10669 491 --NGYEAGEIVASAREKRPDIEIIARAHYD----DEVAYITE-R---GANQVVMGEREI 539 (558)
T ss_pred --ChHHHHHHHHHHHHHCCCCeEEEEECCH----HHHHHHHH-c---CCCEEEChHHHH
Confidence 11222222222222 244555444332 22233333 2 688888655554
No 194
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=26.64 E-value=3.2e+02 Score=21.70 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=35.3
Q ss_pred CCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEE-CCChHHHhhhhhHHHhhccCCCceEEEcC
Q 023557 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMD-LASFEMVRNFRTPLLQLLESGDVDLCFAN 232 (280)
Q Consensus 169 ~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D-~~~~~~~~~~~~~l~~~l~~~~~dil~~N 232 (280)
.++|++.+.... +.+...++++.+++.|+++.++ +++.. ..+..+.+. ..+|++..+
T Consensus 76 aGad~i~~h~~~-~~~~~~~~i~~~~~~g~~~~v~~~~~~t-----~~e~~~~~~-~~~d~v~~~ 133 (202)
T cd04726 76 AGADIVTVLGAA-PLSTIKKAVKAAKKYGKEVQVDLIGVED-----PEKRAKLLK-LGVDIVILH 133 (202)
T ss_pred cCCCEEEEEeeC-CHHHHHHHHHHHHHcCCeEEEEEeCCCC-----HHHHHHHHH-CCCCEEEEc
Confidence 468888887432 3456678888899999999987 44321 122222222 267887653
No 195
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=26.63 E-value=3.1e+02 Score=24.83 Aligned_cols=100 Identities=13% Similarity=0.052 Sum_probs=54.0
Q ss_pred cCCcEEEEEeecCChhHHHHHHHHHhC-CCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCC
Q 023557 93 FGVPCGLIGAYGDDQQGQLFVSNMQFS-GVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGS 171 (280)
Q Consensus 93 lG~~~~~~~~vG~D~~g~~i~~~L~~~-gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (280)
...++.++|.-| ..|+.+.+.|.+. +++...+.... ..+..+.... ..+. .+.. ....+++...++++
T Consensus 37 ~~~kVaIvGATG--~vG~eLlrlL~~hP~~el~~l~s~~-saG~~i~~~~----~~l~--~~~~--~~~~~~~~~~~~~~ 105 (381)
T PLN02968 37 EKKRIFVLGASG--YTGAEVRRLLANHPDFEITVMTADR-KAGQSFGSVF----PHLI--TQDL--PNLVAVKDADFSDV 105 (381)
T ss_pred cccEEEEECCCC--hHHHHHHHHHHhCCCCeEEEEEChh-hcCCCchhhC----cccc--Cccc--cceecCCHHHhcCC
Confidence 335788888877 4799999999887 44444433221 1111111000 0000 0111 11223333335789
Q ss_pred cEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChH
Q 023557 172 KWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (280)
Q Consensus 172 ~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~ 208 (280)
|++++.. +.+...+++... +.| ..++|.++..
T Consensus 106 DvVf~Al---p~~~s~~i~~~~-~~g-~~VIDlSs~f 137 (381)
T PLN02968 106 DAVFCCL---PHGTTQEIIKAL-PKD-LKIVDLSADF 137 (381)
T ss_pred CEEEEcC---CHHHHHHHHHHH-hCC-CEEEEcCchh
Confidence 9998873 455667777765 356 5678998764
No 196
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=26.53 E-value=4.6e+02 Score=23.29 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=10.8
Q ss_pred CCEEEEE----cCCCceEEEeC
Q 023557 259 CQWAVVT----LGPNGCIAKHG 276 (280)
Q Consensus 259 ~~~vvvT----~G~~Ga~~~~~ 276 (280)
...++|+ .|..|.+.++.
T Consensus 145 ~~~~CvKP~~g~gg~GFr~l~~ 166 (329)
T PF15632_consen 145 GQPLCVKPAVGIGGRGFRVLDE 166 (329)
T ss_pred CceEEEecccCCCcceEEEEcc
Confidence 3445554 57777777764
No 197
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=26.31 E-value=4.1e+02 Score=25.86 Aligned_cols=120 Identities=17% Similarity=0.114 Sum_probs=66.7
Q ss_pred EEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEEe
Q 023557 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRF 178 (280)
Q Consensus 99 ~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~ 178 (280)
-+-.+|-..+|+.+.+.|++.|+++.-+..++..-. .. ...|...++ |... +++.+...-+++++.+++..
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~---~~-~~~g~~v~~---GDat--~~~~L~~agi~~A~~vvv~~ 472 (621)
T PRK03562 402 RVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIE---TL-RKFGMKVFY---GDAT--RMDLLESAGAAKAEVLINAI 472 (621)
T ss_pred cEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHH---HH-HhcCCeEEE---EeCC--CHHHHHhcCCCcCCEEEEEe
Confidence 344567778999999999999997654443322110 01 113433332 3221 23334444577899998886
Q ss_pred cCCCHHHHHHHHHHHHHCC--CeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHH
Q 023557 179 GMFNFEVIQAAIRIAKQEG--LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA 237 (280)
Q Consensus 179 ~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~ 237 (280)
. +.+....++..+|+.. .+++.=.... .....+.+ ..+|.+..-..|..
T Consensus 473 ~--d~~~n~~i~~~ar~~~p~~~iiaRa~d~----~~~~~L~~----~Gad~v~~e~~e~s 523 (621)
T PRK03562 473 D--DPQTSLQLVELVKEHFPHLQIIARARDV----DHYIRLRQ----AGVEKPERETFEGA 523 (621)
T ss_pred C--CHHHHHHHHHHHHHhCCCCeEEEEECCH----HHHHHHHH----CCCCEEehhhHhHH
Confidence 4 5566667777777663 3454433332 22233333 26788766555543
No 198
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=26.14 E-value=88 Score=26.51 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHCCCeEEEECC
Q 023557 182 NFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 182 ~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.+.++++++.++++|++|++|+-
T Consensus 50 t~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 50 TMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hhhhhhhhhhccccccceEEEeee
Confidence 567899999999999999999984
No 199
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=25.82 E-value=1.9e+02 Score=24.05 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=29.7
Q ss_pred cCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 168 ~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
+.++|+++.- . ..++....+.+.+++.|.+.++=++..
T Consensus 49 i~~~Dl~I~y-~-lHPDl~~~l~~~~~e~g~kavIvp~~~ 86 (217)
T PF02593_consen 49 IPEADLLIAY-G-LHPDLTYELPEIAKEAGVKAVIVPSES 86 (217)
T ss_pred CCCCCEEEEe-c-cCchhHHHHHHHHHHcCCCEEEEecCC
Confidence 7889987554 3 378999999999998998887777643
No 200
>PRK04296 thymidine kinase; Provisional
Probab=25.65 E-value=2.2e+02 Score=22.68 Aligned_cols=35 Identities=9% Similarity=0.075 Sum_probs=26.5
Q ss_pred CCcEEEEE-ecCCCHHHHHHHHHHHHHCCCeEEEEC
Q 023557 170 GSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDL 204 (280)
Q Consensus 170 ~~~~v~i~-~~~~~~~~~~~~~~~a~~~g~~v~~D~ 204 (280)
+.++|+++ ...++.+.+.++++.++..|+.+++--
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tg 113 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYG 113 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 67899999 444566667788888888898877654
No 201
>PRK04148 hypothetical protein; Provisional
Probab=25.51 E-value=1.5e+02 Score=22.56 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=30.0
Q ss_pred cccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEEC
Q 023557 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDL 204 (280)
Q Consensus 166 ~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~ 204 (280)
++-+++|.+|--.. +++....+++.|++.+..+++-+
T Consensus 73 ~~y~~a~liysirp--p~el~~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 73 EIYKNAKLIYSIRP--PRDLQPFILELAKKINVPLIIKP 109 (134)
T ss_pred HHHhcCCEEEEeCC--CHHHHHHHHHHHHHcCCCEEEEc
Confidence 45677888877654 78999999999999999888776
No 202
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=25.45 E-value=2e+02 Score=19.60 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCcee
Q 023557 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRT 147 (280)
Q Consensus 109 g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~ 147 (280)
=+.+.+.+++.|+....-..........+.+.|++|.+.
T Consensus 67 v~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~i 105 (108)
T PF12681_consen 67 VDALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRI 105 (108)
T ss_dssp HHHHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EE
T ss_pred HHHHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEE
Confidence 366666788899885432222223447888899999764
No 203
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=25.18 E-value=2e+02 Score=21.02 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeee
Q 023557 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP 150 (280)
Q Consensus 108 ~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~ 150 (280)
.=+.+.+.|++.|+...........-++++.+.||+|...-+.
T Consensus 78 ~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~ 120 (131)
T cd08364 78 DVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELH 120 (131)
T ss_pred HHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEe
Confidence 3466888899999976533211111356788889998766544
No 204
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=24.99 E-value=2e+02 Score=20.45 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeee
Q 023557 109 GQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMR 149 (280)
Q Consensus 109 g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~ 149 (280)
=+.+.+.|++.|+.+........ ..+..+.+.||+|.+.-+
T Consensus 75 v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~ 116 (122)
T cd07265 75 LEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMEL 116 (122)
T ss_pred HHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEE
Confidence 46678889999997653322112 245677889999987644
No 205
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=24.39 E-value=3.9e+02 Score=21.68 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=40.8
Q ss_pred ccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcC
Q 023557 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFAN 232 (280)
Q Consensus 167 ~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N 232 (280)
.-.++|.+++.....+.+.+.++++.++..|..+.++..++. ++.+.... .+|++..|
T Consensus 91 ~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~-------e~~~~~~~-g~~~i~~t 148 (217)
T cd00331 91 RAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEE-------ELERALAL-GAKIIGIN 148 (217)
T ss_pred HHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHH-------HHHHHHHc-CCCEEEEe
Confidence 346789999884434668888999999999999988887652 23333332 57777655
No 206
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=24.22 E-value=2.1e+02 Score=19.31 Aligned_cols=50 Identities=16% Similarity=0.083 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHH
Q 023557 184 EVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA 237 (280)
Q Consensus 184 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~ 237 (280)
+...++....+..|..+.+|.....+...++. .+... ...++++.++|+.
T Consensus 18 ~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~--a~~~g--~~~~iiiG~~e~~ 67 (94)
T cd00861 18 ELAEKLYAELQAAGVDVLLDDRNERPGVKFAD--ADLIG--IPYRIVVGKKSAA 67 (94)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCcccchhH--HHhcC--CCEEEEECCchhh
Confidence 45566677777889999999875432222222 12233 5678888888775
No 207
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=24.20 E-value=2.5e+02 Score=20.46 Aligned_cols=64 Identities=17% Similarity=0.074 Sum_probs=37.4
Q ss_pred CCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHH
Q 023557 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (280)
Q Consensus 169 ~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~ 236 (280)
.+.|+|.++..........++++..|+.+..+.+=.++.... ...+.+ ... ..+|+++..+-|.
T Consensus 38 ~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t-~~p~~~--~~~-~~~D~vv~GEgE~ 101 (127)
T cd02068 38 LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHAT-FFPEEI--LEE-PGVDFVVIGEGEE 101 (127)
T ss_pred cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchh-hCHHHH--hcC-CCCCEEEECCcHH
Confidence 578999999432344567788888888764333333433211 122222 111 3799999987774
No 208
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=23.94 E-value=4.2e+02 Score=21.92 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=36.3
Q ss_pred cEEEEEe-cC-CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcC
Q 023557 172 KWLVLRF-GM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFAN 232 (280)
Q Consensus 172 ~~v~i~~-~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N 232 (280)
+.|.++. .. +.++.+.++++.+++.|..+.++.++... .+.+.+.++++ .+|.+.++
T Consensus 72 ~~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~--~~~~~~~~ll~--~~d~v~is 130 (246)
T PRK11145 72 GGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVR--RYDPVIDELLD--VTDLVMLD 130 (246)
T ss_pred CeEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCC--cchHHHHHHHH--hCCEEEEC
Confidence 4677773 22 46777788999999999999999876521 11233444444 56665444
No 209
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=23.63 E-value=2e+02 Score=20.15 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=25.9
Q ss_pred eecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCcee
Q 023557 102 AYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRT 147 (280)
Q Consensus 102 ~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~ 147 (280)
.+.+...=+.+.+.|++.|+.................+.||+|...
T Consensus 77 ~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~i 122 (125)
T cd07241 77 SVGSKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRI 122 (125)
T ss_pred ECCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEE
Confidence 3344334467777789999976532211112223344779998754
No 210
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=23.56 E-value=4.1e+02 Score=22.37 Aligned_cols=47 Identities=15% Similarity=0.016 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHH
Q 023557 181 FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDE 235 (280)
Q Consensus 181 ~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E 235 (280)
++.+...++.+.+++.|+..+..+-+.. .-+.+.+ + .++.+++--.|
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~----s~d~l~~-~---~~~~~KIaS~d 99 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE----SVDFLEE-L---GVPAYKIASGD 99 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH----HHHHHHH-H---T-SEEEE-GGG
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH----HHHHHHH-c---CCCEEEecccc
Confidence 4788899999999999998888876542 1122222 2 46777764433
No 211
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.50 E-value=2e+02 Score=18.18 Aligned_cols=33 Identities=12% Similarity=0.072 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCccceeeeCCCCceeEEEEEc
Q 023557 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVD 141 (280)
Q Consensus 109 g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~ 141 (280)
...+.+.|.+.||+...+.........++++-+
T Consensus 17 ~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~ 49 (65)
T cd04918 17 LERAFHVLYTKGVNVQMISQGASKVNISLIVND 49 (65)
T ss_pred HHHHHHHHHHCCCCEEEEEecCccceEEEEEeH
Confidence 456777789999998766655444555555543
No 212
>PRK10537 voltage-gated potassium channel; Provisional
Probab=23.49 E-value=5.7e+02 Score=23.30 Aligned_cols=118 Identities=8% Similarity=-0.021 Sum_probs=62.6
Q ss_pred EEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEE
Q 023557 98 GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLR 177 (280)
Q Consensus 98 ~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~ 177 (280)
..+-.+|-+..|+.+.+.|++.|.++.-+..+ ... ... +++...+ .|.. -+++.+.+.-+++++.+++.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d--~~~---~~~-~~g~~vI---~GD~--td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPL--GLE---HRL-PDDADLI---PGDS--SDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECc--hhh---hhc-cCCCcEE---EeCC--CCHHHHHhcCcccCCEEEEc
Confidence 34567788999999999999998875433321 110 011 1222222 1221 23444555567889998887
Q ss_pred ecCCCHHHHHHHHHHHHHCC--CeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHH
Q 023557 178 FGMFNFEVIQAAIRIAKQEG--LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (280)
Q Consensus 178 ~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~ 236 (280)
.. +.+....++..+|+.+ .+++.-.... ...+.+.+. .+|.++.-.+..
T Consensus 310 t~--dD~~Nl~ivL~ar~l~p~~kIIa~v~~~----~~~~~L~~~----GaD~VIsp~~l~ 360 (393)
T PRK10537 310 RD--NDADNAFVVLAAKEMSSDVKTVAAVNDS----KNLEKIKRV----HPDMIFSPQLLG 360 (393)
T ss_pred CC--ChHHHHHHHHHHHHhCCCCcEEEEECCH----HHHHHHHhc----CCCEEECHHHHH
Confidence 43 2222233344455554 4566555443 233444432 677766554443
No 213
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=23.34 E-value=2.5e+02 Score=25.76 Aligned_cols=63 Identities=6% Similarity=0.108 Sum_probs=35.8
Q ss_pred cCCCcEEEEE-ecCC--CHHHHHHHHHHHHHCCC---eEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHH
Q 023557 168 VKGSKWLVLR-FGMF--NFEVIQAAIRIAKQEGL---SVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDE 235 (280)
Q Consensus 168 ~~~~~~v~i~-~~~~--~~~~~~~~~~~a~~~g~---~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E 235 (280)
.+++|++.++ .... ...-..++++.+++.+. +|++--.-. ..+.+++...++ .+|.++.+.++
T Consensus 34 ~~~aD~v~intC~v~~~a~~~~~~~i~~~~~~~~~~~~vvvgGc~a---~~~~ee~~~~~~--~vd~vvg~~~~ 102 (429)
T TIGR00089 34 PEEADVIIINTCAVREKAEQKVRSRLGELAKLKKKNAKIVVAGCLA---QREGEELLKRIP--EVDIVLGPQNK 102 (429)
T ss_pred cccCCEEEEecceeechHHHHHHHHHHHHHHhCcCCCEEEEECccc---ccCHHHHHhhCC--CCCEEECCCCH
Confidence 3568999997 2211 23345666667666665 555543222 234455444454 78988877643
No 214
>PRK06767 methionine gamma-lyase; Provisional
Probab=23.33 E-value=5.5e+02 Score=23.06 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=20.1
Q ss_pred CCcEEEEEec--C-CCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 170 GSKWLVLRFG--M-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 170 ~~~~v~i~~~--~-~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.++|++... . ...-.+.++.+.+++.|..+++|-.
T Consensus 146 ~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a 184 (386)
T PRK06767 146 NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNT 184 (386)
T ss_pred CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECC
Confidence 4566666621 1 0111235566666777888888865
No 215
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=23.32 E-value=2.8e+02 Score=26.41 Aligned_cols=90 Identities=12% Similarity=0.153 Sum_probs=47.1
Q ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEE---ECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCC
Q 023557 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSM---DLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENA 246 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~---D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~ 246 (280)
.+|++=+... ..+...+.+..++..+.++++ |+......+.....+.+.... .+|++|+- .+. .
T Consensus 110 ~~d~iDiEl~--~~~~~~~~~~~~~~~~~~vI~S~H~f~~tP~~~el~~~~~~~~~~-gaDi~Kia------~~~----~ 176 (529)
T PLN02520 110 GADYVDVELK--VAHEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNLVARIQAT-GADIVKIA------TTA----L 176 (529)
T ss_pred CCCEEEEEcC--CchhHHHHHHhhhhcCCEEEEEecCCCCCCCHHHHHHHHHHHHHh-CCCEEEEe------cCC----C
Confidence 3677766632 223556667777778888888 543211011222223333331 58898872 111 1
Q ss_pred cHHHHHHHH----hcCCCEEEEEcCCCceE
Q 023557 247 DSEAALEFL----AKRCQWAVVTLGPNGCI 272 (280)
Q Consensus 247 ~~~~~~~~l----~~~~~~vvvT~G~~Ga~ 272 (280)
+..+..+.+ ....+.+.+.+|+.|.+
T Consensus 177 ~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~ 206 (529)
T PLN02520 177 DITDVARMFQITVHSQVPTIGLVMGERGLI 206 (529)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEecCCCCch
Confidence 222222222 22456788899999964
No 216
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=23.27 E-value=1e+02 Score=27.74 Aligned_cols=50 Identities=26% Similarity=0.364 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHCCCeEEEECCChHHHh--hh----hhHHHhhccCCCceEEEcCHH
Q 023557 184 EVIQAAIRIAKQEGLSVSMDLASFEMVR--NF----RTPLLQLLESGDVDLCFANED 234 (280)
Q Consensus 184 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~--~~----~~~l~~~l~~~~~dil~~N~~ 234 (280)
-...++.+.+++++++++.|.++-.... .| .+.+++.++ ..+|+++.+-+
T Consensus 157 ~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~-~GaDlV~fSGd 212 (367)
T PF03841_consen 157 VSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLA-AGADLVTFSGD 212 (367)
T ss_dssp ----HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCC-CT-SEEEEETT
T ss_pred ccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhh-cCCCEEEEECC
Confidence 3456788889999999999998732211 12 355677777 37999988754
No 217
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.25 E-value=3.5e+02 Score=24.02 Aligned_cols=48 Identities=15% Similarity=0.023 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHH
Q 023557 181 FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (280)
Q Consensus 181 ~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~ 236 (280)
++.+....+.+.+++.|+.++-.+-... .-+.+.+ + .++++++--.|+
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~----svd~l~~-~---~v~~~KIaS~~~ 120 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLE----SADFLED-L---GVPRFKIPSGEI 120 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHH----HHHHHHh-c---CCCEEEECcccc
Confidence 3678888999999999999888886542 1122222 1 478887654443
No 218
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=23.12 E-value=2.6e+02 Score=23.10 Aligned_cols=69 Identities=16% Similarity=0.272 Sum_probs=38.7
Q ss_pred cCCcCCCCCcccCcccccCCCcEEEEEecCCCHHHHHHHHHHHHHCC--CeEEEECCChHHHhhhhhHHHhhccCCCceE
Q 023557 151 CLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEG--LSVSMDLASFEMVRNFRTPLLQLLESGDVDL 228 (280)
Q Consensus 151 ~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~~~~~~~~~l~~~l~~~~~di 228 (280)
|.|++.-.+..++.. .+.+..+..+.+ ++..+.+++..|+++. .++.-|...+. .| ..+.+ .+|+
T Consensus 82 YLGAasGTTvSHVSD-Iv~~G~iYaVEf---s~R~~reLl~~a~~R~Ni~PIL~DA~~P~---~Y----~~~Ve--~VDv 148 (231)
T COG1889 82 YLGAASGTTVSHVSD-IVGEGRIYAVEF---SPRPMRELLDVAEKRPNIIPILEDARKPE---KY----RHLVE--KVDV 148 (231)
T ss_pred EeeccCCCcHhHHHh-ccCCCcEEEEEe---cchhHHHHHHHHHhCCCceeeecccCCcH---Hh----hhhcc--cccE
Confidence 456655556665542 333333444444 4566777787776653 57778876542 33 33444 6777
Q ss_pred EEcC
Q 023557 229 CFAN 232 (280)
Q Consensus 229 l~~N 232 (280)
++..
T Consensus 149 iy~D 152 (231)
T COG1889 149 IYQD 152 (231)
T ss_pred EEEe
Confidence 7643
No 219
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=23.04 E-value=5.1e+02 Score=22.98 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=26.5
Q ss_pred ccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChH
Q 023557 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFE 208 (280)
Q Consensus 167 ~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~ 208 (280)
..+++|++++.. +.....+++..+.+.|+ .++|.++..
T Consensus 65 ~~~~vD~Vf~al---P~~~~~~~v~~a~~aG~-~VID~S~~f 102 (343)
T PRK00436 65 ILAGADVVFLAL---PHGVSMDLAPQLLEAGV-KVIDLSADF 102 (343)
T ss_pred HhcCCCEEEECC---CcHHHHHHHHHHHhCCC-EEEECCccc
Confidence 346789998873 44556666777766675 679998764
No 220
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=22.93 E-value=3.8e+02 Score=23.16 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHCCCeEEEECCChHH---HhhhhhHHHhhccCCCceEEEcC
Q 023557 184 EVIQAAIRIAKQEGLSVSMDLASFEM---VRNFRTPLLQLLESGDVDLCFAN 232 (280)
Q Consensus 184 ~~~~~~~~~a~~~g~~v~~D~~~~~~---~~~~~~~l~~~l~~~~~dil~~N 232 (280)
..+.++++.+++.|.+|++|.--.++ +..|.+.+.+- ++ .+|.++.|
T Consensus 73 ~~l~~~i~~l~~~g~~VilD~K~~DI~nTv~~ya~a~~~~-~~-g~DavTVh 122 (278)
T PRK00125 73 AQLERTIAYLREAGVLVIADAKRGDIGSTAEAYAKAAFES-PL-EADAVTVS 122 (278)
T ss_pred hHHHHHHHHHHHCCCcEEEEeecCChHHHHHHHHHHHhcC-cc-CCcEEEEC
Confidence 35667888889999999999843322 22333333310 21 68999988
No 221
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.59 E-value=3e+02 Score=25.22 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=27.4
Q ss_pred eecCchHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCc
Q 023557 76 TIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVD 122 (280)
Q Consensus 76 ~~~GG~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~ 122 (280)
.-.|+.|.-.|..|+. .|.+++.+..-..+.. +...+.|++.|+.
T Consensus 11 iG~g~~G~~~A~~l~~-~G~~V~~~d~~~~~~~-~~~~~~l~~~~~~ 55 (450)
T PRK14106 11 VGAGVSGLALAKFLKK-LGAKVILTDEKEEDQL-KEALEELGELGIE 55 (450)
T ss_pred ECCCHHHHHHHHHHHH-CCCEEEEEeCCchHHH-HHHHHHHHhcCCE
Confidence 3456677778888885 8998887755222222 2233456666765
No 222
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.56 E-value=2.3e+02 Score=19.73 Aligned_cols=42 Identities=10% Similarity=0.032 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhCCCccceeeeCCCCc-eeEEEEEcCCCceeeee
Q 023557 108 QGQLFVSNMQFSGVDVSRLRMKRGPT-GQCVCLVDASGNRTMRP 150 (280)
Q Consensus 108 ~g~~i~~~L~~~gV~~~~v~~~~~~T-~~~~~~~~~~g~r~~~~ 150 (280)
.=+...+.+++.|+....-... .+. +..+.+.|++|.+..+.
T Consensus 77 d~~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~~DP~Gn~iei~ 119 (121)
T cd07251 77 EVDAVLARAAAAGATIVKPPQD-VFWGGYSGYFADPDGHLWEVA 119 (121)
T ss_pred HHHHHHHHHHhCCCEEecCCcc-CCCCceEEEEECCCCCEEEEe
Confidence 3466777788889876432221 223 56777889999876543
No 223
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=22.43 E-value=2e+02 Score=24.50 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHh
Q 023557 82 VTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQF 118 (280)
Q Consensus 82 ~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~ 118 (280)
++|.|.++|+ .|.++.++=. |..|..+.+.|.-
T Consensus 75 a~nLA~alA~-~G~rVlliDa---D~~gps~~~~l~~ 107 (265)
T COG0489 75 AVNLAAALAQ-LGKRVLLLDA---DLRGPSIPRMLGL 107 (265)
T ss_pred HHHHHHHHHh-cCCcEEEEeC---cCCCCchHHHhCC
Confidence 4799999996 9999888765 6666777777654
No 224
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=22.30 E-value=1.4e+02 Score=23.40 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHCC-CeEEEEC
Q 023557 185 VIQAAIRIAKQEG-LSVSMDL 204 (280)
Q Consensus 185 ~~~~~~~~a~~~g-~~v~~D~ 204 (280)
.+.++++.+.+.+ ..+++|+
T Consensus 119 ~~~~~i~~iN~~~~~viAiDi 139 (169)
T PF03853_consen 119 PIAELIDWINASRAPVIAIDI 139 (169)
T ss_dssp CHHHHHHHHHHHCSEEEEESS
T ss_pred HHHHHHHHHhccCCcEEEecC
Confidence 4556666665554 4667886
No 225
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=22.29 E-value=5.9e+02 Score=23.04 Aligned_cols=38 Identities=24% Similarity=0.166 Sum_probs=22.5
Q ss_pred CCCcEEEEEec--CC-CHHHHHHHHHHHHHCCCeEEEECCC
Q 023557 169 KGSKWLVLRFG--MF-NFEVIQAAIRIAKQEGLSVSMDLAS 206 (280)
Q Consensus 169 ~~~~~v~i~~~--~~-~~~~~~~~~~~a~~~g~~v~~D~~~ 206 (280)
++.++|+++.. .. ..-...++.+.+++.|..+++|-..
T Consensus 137 ~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~ 177 (388)
T PRK08861 137 KKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTF 177 (388)
T ss_pred cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCc
Confidence 35677887621 10 1111345666677888889888753
No 226
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=22.29 E-value=1.9e+02 Score=19.71 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCC
Q 023557 83 TNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSG 120 (280)
Q Consensus 83 ~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~g 120 (280)
...++ .++ +|.++.|-++-+.|...+.+.+.|.+.|
T Consensus 25 L~~ai-~~~-FG~~arFhTCSae~m~a~eLv~FL~~rg 60 (78)
T PF10678_consen 25 LKAAI-IEK-FGEDARFHTCSAEGMTADELVDFLEERG 60 (78)
T ss_pred HHHHH-HHH-hCCCceEEecCCCCCCHHHHHHHHHHcC
Confidence 33444 464 9999999999999999999999999877
No 227
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=22.28 E-value=2.5e+02 Score=19.47 Aligned_cols=40 Identities=8% Similarity=-0.088 Sum_probs=24.5
Q ss_pred HHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeee
Q 023557 110 QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR 149 (280)
Q Consensus 110 ~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~ 149 (280)
+.+.+.|++.|+....-........+.+.+.|++|.+..+
T Consensus 69 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~ 108 (112)
T cd07238 69 DAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNI 108 (112)
T ss_pred HHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEE
Confidence 5667778999987542111111123567788999987654
No 228
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=22.22 E-value=1.6e+02 Score=20.45 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=29.8
Q ss_pred chHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccc
Q 023557 80 GSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVS 124 (280)
Q Consensus 80 G~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~ 124 (280)
|.+...+..|.. .|.++.+++.+|.. ....|++.||...
T Consensus 50 ~~~~~~~~~l~~-~~v~~vi~~~iG~~-----~~~~l~~~gI~v~ 88 (103)
T cd00851 50 GAGGKAAEFLAD-EGVDVVIVGGIGPR-----ALNKLRNAGIKVY 88 (103)
T ss_pred CCchHHHHHHHH-cCCCEEEeCCCCcC-----HHHHHHHCCCEEE
Confidence 445677777885 89999999987754 6677888899763
No 229
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=22.19 E-value=2.5e+02 Score=20.53 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeec
Q 023557 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPC 151 (280)
Q Consensus 108 ~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~ 151 (280)
.=+.+.+.|++.|+....-.......+..+.+.|++|.+.-+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~ 114 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHT 114 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEec
Confidence 34667777899999854211111124567788899998876544
No 230
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=21.85 E-value=1.8e+02 Score=17.57 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=18.1
Q ss_pred EcCHHHHHHHhcCCCCCcHHHHHHHHhc
Q 023557 230 FANEDEAAELVRGEENADSEAALEFLAK 257 (280)
Q Consensus 230 ~~N~~E~~~l~~~~~~~~~~~~~~~l~~ 257 (280)
+++.+|+..|+|.. ....-+++|++
T Consensus 2 fLT~~El~elTG~k---~~~~Q~~~L~~ 26 (47)
T PF13986_consen 2 FLTDEELQELTGYK---RPSKQIRWLRR 26 (47)
T ss_pred CCCHHHHHHHHCCC---CHHHHHHHHHH
Confidence 57899999999964 45555566754
No 231
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=21.19 E-value=1.9e+02 Score=17.91 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhCCCccceeeeCCCCceeEEEEEc
Q 023557 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVD 141 (280)
Q Consensus 108 ~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~ 141 (280)
....+.+.|.+.||+...+.........++.+-.
T Consensus 17 ~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~ 50 (66)
T cd04922 17 VAATFFSALAKANVNIRAIAQGSSERNISAVIDE 50 (66)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeH
Confidence 3456778899999999877553233555555543
No 232
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=21.18 E-value=1.5e+02 Score=25.92 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=29.7
Q ss_pred chHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHH
Q 023557 80 GSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQ 117 (280)
Q Consensus 80 G~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~ 117 (280)
|.. +...-|.+ .|++++|+..+|.|..|+.+.+.++
T Consensus 19 g~~-~~~~~~~~-~~~~a~f~~~~gpd~~g~~~~r~~~ 54 (296)
T PRK15394 19 GVP-RLLEILSK-HGIQASFFFSVGPDNMGRHLWRLLK 54 (296)
T ss_pred CHH-HHHHHHHH-cCCCEEEEeccCCCchhHHHHHHhh
Confidence 554 67777885 9999999999999999988876653
No 233
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=21.02 E-value=1.9e+02 Score=16.91 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhCCCccceeeeCCCCceeEEEEE
Q 023557 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLV 140 (280)
Q Consensus 108 ~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~ 140 (280)
.-..+.+.|.+.+++...+.........++.+-
T Consensus 16 ~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v~ 48 (60)
T cd04868 16 VAAKIFSALAEAGINVDMISQSESEVNISFTVD 48 (60)
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEEe
Confidence 445688889999999887765432234444443
No 234
>PRK07121 hypothetical protein; Validated
Probab=21.00 E-value=1.3e+02 Score=28.17 Aligned_cols=23 Identities=9% Similarity=0.016 Sum_probs=15.2
Q ss_pred cCchHHHHHHHHHhhcCCcEEEEE
Q 023557 78 AGGSVTNTIRGLSVGFGVPCGLIG 101 (280)
Q Consensus 78 ~GG~~~N~a~~la~~lG~~~~~~~ 101 (280)
.|++|.-+|+.++. .|.+|.++-
T Consensus 28 aG~AGl~AA~~aae-~G~~VillE 50 (492)
T PRK07121 28 FGAAGACAAIEAAA-AGARVLVLE 50 (492)
T ss_pred cCHHHHHHHHHHHH-CCCeEEEEe
Confidence 45566677777774 777776653
No 235
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=20.61 E-value=1.6e+02 Score=26.27 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=27.7
Q ss_pred CCCcEEEEEe--c----CCCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 169 KGSKWLVLRF--G----MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 169 ~~~~~v~i~~--~----~~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
.+.++++++. + ..+.+...++++.+++++..++.|-.
T Consensus 165 ~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~ 207 (385)
T PRK09276 165 KKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAA 207 (385)
T ss_pred ccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecc
Confidence 4667888871 1 14677788889999999998888874
No 236
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=20.61 E-value=2.4e+02 Score=26.29 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=38.5
Q ss_pred CCceeecCchH--HHHHHHHHhhcCCcEEEEEeec------CChhHHHHHHHHHhCCCccc
Q 023557 72 SPIKTIAGGSV--TNTIRGLSVGFGVPCGLIGAYG------DDQQGQLFVSNMQFSGVDVS 124 (280)
Q Consensus 72 ~~~~~~~GG~~--~N~a~~la~~lG~~~~~~~~vG------~D~~g~~i~~~L~~~gV~~~ 124 (280)
++.-...||.. .=.|-.+++ ||.+|+++-... +.+..+.+.+.|++.|+.+.
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~-LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~ 232 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAA-LGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKIL 232 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 35556666653 446777886 999999997654 66788999999999777654
No 237
>PRK05957 aspartate aminotransferase; Provisional
Probab=20.55 E-value=2.8e+02 Score=24.86 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=26.1
Q ss_pred CCcEEEEEe--c----CCCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 170 GSKWLVLRF--G----MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 170 ~~~~v~i~~--~----~~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.+.+++.. . ..+.+...++++.|++.|+.++.|-.
T Consensus 160 ~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~ 201 (389)
T PRK05957 160 KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEA 201 (389)
T ss_pred CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEecc
Confidence 567777762 1 13567788888889999988888864
No 238
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=20.51 E-value=5.3e+02 Score=22.17 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=49.0
Q ss_pred CceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEEecC-------CC----HHHHHHHHHHHHHCCCeE
Q 023557 132 PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGM-------FN----FEVIQAAIRIAKQEGLSV 200 (280)
Q Consensus 132 ~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~-------~~----~~~~~~~~~~a~~~g~~v 200 (280)
+++..+.+.-.+|+.++++..........+.+.+-.-++.++++++.+. .. ...+..+-+.+.+.+.++
T Consensus 163 kLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~l 242 (304)
T COG2248 163 KLGYVLMVAVTDGKSSIVFASDVQGPINDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATL 242 (304)
T ss_pred ccceEEEEEEecCCeEEEEcccccCCCccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcceE
Confidence 3555555544577777765544444445555554334578999998332 11 123444444556667889
Q ss_pred EEECCChHHHhhhhhHHHhhcc
Q 023557 201 SMDLASFEMVRNFRTPLLQLLE 222 (280)
Q Consensus 201 ~~D~~~~~~~~~~~~~l~~~l~ 222 (280)
++|=.--- ..+|++.+.++..
T Consensus 243 ViDHHllR-D~~y~e~l~~l~~ 263 (304)
T COG2248 243 VIDHHLLR-DKNYREFLEELFE 263 (304)
T ss_pred EEeehhhc-CCCHHHHHHHHHh
Confidence 99964210 0245555555443
No 239
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=20.48 E-value=4.7e+02 Score=21.24 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=28.8
Q ss_pred ccCCCcEEEEE-ecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 167 DVKGSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 167 ~~~~~~~v~i~-~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
.-.++|++-++ ..-..+..+.++++..|+....+.-|.+..
T Consensus 61 ~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ 102 (192)
T PF04131_consen 61 AEAGADIIALDATDRPRPETLEELIREIKEKYQLVMADISTL 102 (192)
T ss_dssp HHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSH
T ss_pred HHcCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCH
Confidence 34689999999 322223778889999999999999999875
No 240
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=20.37 E-value=2.6e+02 Score=25.58 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=28.1
Q ss_pred CCCcEEEEE--ecCC-CHHHHHHHHHHHHHCCCeEEEECCC
Q 023557 169 KGSKWLVLR--FGMF-NFEVIQAAIRIAKQEGLSVSMDLAS 206 (280)
Q Consensus 169 ~~~~~v~i~--~~~~-~~~~~~~~~~~a~~~g~~v~~D~~~ 206 (280)
++.++|.++ .+.. ...-+.++.+.+++.|..+++|-..
T Consensus 161 ~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq 201 (405)
T COG0520 161 PKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQ 201 (405)
T ss_pred CCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECcc
Confidence 457899888 2211 1334788999999999999999964
No 241
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=20.32 E-value=4.8e+02 Score=23.46 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=44.2
Q ss_pred EEeec-CChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEEe
Q 023557 100 IGAYG-DDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRF 178 (280)
Q Consensus 100 ~~~vG-~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~ 178 (280)
++.+| -...|..+...|.+.|.++..+.+. . . . + ..+.++++|+|+++.
T Consensus 101 I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~--~---------------~-------~--~----~~~~~~~aDlVilav 150 (374)
T PRK11199 101 VVIVGGKGQLGRLFAKMLTLSGYQVRILEQD--D---------------W-------D--R----AEDILADAGMVIVSV 150 (374)
T ss_pred EEEEcCCChhhHHHHHHHHHCCCeEEEeCCC--c---------------c-------h--h----HHHHHhcCCEEEEeC
Confidence 56666 6779999999999988653322211 0 0 0 1 123567899999983
Q ss_pred cCCCHHHHHHHHHHHHHC-CCeEEEECCCh
Q 023557 179 GMFNFEVIQAAIRIAKQE-GLSVSMDLASF 207 (280)
Q Consensus 179 ~~~~~~~~~~~~~~a~~~-g~~v~~D~~~~ 207 (280)
|......+++..... .-.+++|.++.
T Consensus 151 ---P~~~~~~~~~~l~~l~~~~iv~Dv~Sv 177 (374)
T PRK11199 151 ---PIHLTEEVIARLPPLPEDCILVDLTSV 177 (374)
T ss_pred ---cHHHHHHHHHHHhCCCCCcEEEECCCc
Confidence 333334444333222 24688998874
No 242
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=20.32 E-value=3.3e+02 Score=24.83 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=37.2
Q ss_pred CCCcEEEEEecCCC---HHHHHHHHHHHHHCC--CeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHH
Q 023557 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEG--LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (280)
Q Consensus 169 ~~~~~v~i~~~~~~---~~~~~~~~~~a~~~g--~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~ 236 (280)
.++|++.++.-.+. .....++++.+++.+ ++|++--... ..+.+++.+ .+ .+|+++.++.|.
T Consensus 32 ~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a---~~~~ee~~~-~~--~vD~vv~~e~~~ 98 (414)
T TIGR01579 32 DKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYA---QSNPKELAD-LK--DVDLVLGNKEKD 98 (414)
T ss_pred ccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCcc---ccCHHHHhc-CC--CCcEEECCCCHH
Confidence 46899999932222 234567777777776 4455443221 234455543 33 799999998764
No 243
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=20.32 E-value=2.7e+02 Score=19.27 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeee
Q 023557 108 QGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRP 150 (280)
Q Consensus 108 ~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~ 150 (280)
.=+.+.+.|++.|+...........-+..+.+.|++|.+.-+.
T Consensus 70 ~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~ 112 (117)
T cd07240 70 DLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELF 112 (117)
T ss_pred HHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEE
Confidence 3466777889999976543321112346677889999876543
No 244
>PRK03673 hypothetical protein; Provisional
Probab=20.28 E-value=3.3e+02 Score=24.89 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC
Q 023557 81 SVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG 131 (280)
Q Consensus 81 ~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~ 131 (280)
.+...+..|.. +|.++...+.++||. +.|++.+++..=..+.+...++
T Consensus 22 N~~~la~~L~~-~G~~v~~~~~v~D~~--~~i~~~l~~a~~~~DlVI~tGG 69 (396)
T PRK03673 22 NAAWLADFFFH-QGLPLSRRNTVGDNL--DALVAILRERSQHADVLIVNGG 69 (396)
T ss_pred HHHHHHHHHHH-CCCEEEEEEEcCCCH--HHHHHHHHHHhccCCEEEEcCC
Confidence 45667777885 999999999999984 7788888876555566666654
No 245
>PRK06545 prephenate dehydrogenase; Validated
Probab=20.05 E-value=3.9e+02 Score=23.81 Aligned_cols=92 Identities=14% Similarity=0.137 Sum_probs=45.3
Q ss_pred EEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEEec
Q 023557 100 IGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFG 179 (280)
Q Consensus 100 ~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~ 179 (280)
++.+|-...|..+...|.+.|.++.............. ..+ .+...... .++ .+.++++|+|+++.
T Consensus 3 I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~----a~~-------~~~~~~~~-~~~-~~~~~~aDlVilav- 68 (359)
T PRK06545 3 VLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLAR----ALG-------FGVIDELA-ADL-QRAAAEADLIVLAV- 68 (359)
T ss_pred EEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHH----Hhc-------CCCCcccc-cCH-HHHhcCCCEEEEeC-
Confidence 46667777888888888887765442222211100000 000 01111000 111 23467788888883
Q ss_pred CCCHHHHHHHHHHHHH---CCCeEEEECCCh
Q 023557 180 MFNFEVIQAAIRIAKQ---EGLSVSMDLASF 207 (280)
Q Consensus 180 ~~~~~~~~~~~~~a~~---~g~~v~~D~~~~ 207 (280)
++.....+++..+. ....++.|.++.
T Consensus 69 --P~~~~~~vl~~l~~~~l~~~~ivtDv~Sv 97 (359)
T PRK06545 69 --PVDATAALLAELADLELKPGVIVTDVGSV 97 (359)
T ss_pred --CHHHHHHHHHHHhhcCCCCCcEEEeCccc
Confidence 44445555555442 123577787765
Done!