Query 023557
Match_columns 280
No_of_seqs 159 out of 2105
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 08:52:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e3a_A Sugar kinase protein; s 100.0 1.4E-38 4.8E-43 282.2 27.3 252 15-279 25-281 (352)
2 3uq6_A Adenosine kinase, putat 100.0 6.4E-38 2.2E-42 279.9 23.4 254 14-278 25-298 (372)
3 3otx_A Adenosine kinase, putat 100.0 4.2E-37 1.4E-41 272.3 24.8 255 13-278 5-279 (347)
4 3vas_A Putative adenosine kina 100.0 1.2E-36 4E-41 271.6 24.0 253 15-278 24-298 (370)
5 3loo_A Anopheles gambiae adeno 100.0 7.2E-36 2.5E-40 266.1 25.7 254 14-278 22-295 (365)
6 1bx4_A Protein (adenosine kina 100.0 3.1E-33 1.1E-37 247.2 27.0 250 14-278 5-278 (345)
7 3ry7_A Ribokinase; transferase 100.0 3.7E-33 1.3E-37 242.5 20.7 226 16-278 3-235 (304)
8 2rbc_A Sugar kinase, AGR_C_456 100.0 9.4E-33 3.2E-37 243.9 23.6 223 14-277 28-254 (343)
9 2abs_A Adenosine kinase, AK; r 100.0 3.6E-32 1.2E-36 243.7 24.2 251 12-274 29-307 (383)
10 1rkd_A Ribokinase; carbohydrat 100.0 3.1E-32 1.1E-36 237.2 20.6 226 16-278 5-236 (309)
11 3go6_A Ribokinase RBSK; phosph 100.0 4.9E-32 1.7E-36 236.1 21.7 211 15-278 19-229 (310)
12 3ljs_A Fructokinase; fructokia 100.0 4.1E-32 1.4E-36 239.4 20.7 229 14-278 3-243 (338)
13 3ikh_A Carbohydrate kinase; tr 100.0 1.4E-32 4.8E-37 238.4 16.0 211 16-278 3-215 (299)
14 2fv7_A Ribokinase; structural 100.0 8.6E-32 2.9E-36 236.7 20.6 227 15-277 24-256 (331)
15 3h49_A Ribokinase; transferase 100.0 6.3E-31 2.2E-35 230.6 23.5 228 15-278 5-242 (325)
16 2c4e_A Sugar kinase MJ0406; tr 100.0 1.4E-31 4.9E-36 232.4 18.7 220 17-278 7-227 (302)
17 3kzh_A Probable sugar kinase; 100.0 1.8E-31 6.2E-36 234.3 18.8 228 13-278 4-238 (328)
18 4du5_A PFKB; structural genomi 100.0 8E-31 2.7E-35 231.0 22.8 228 13-278 24-265 (336)
19 3hj6_A Fructokinase, FRK; fruc 100.0 8.7E-32 3E-36 236.3 16.2 228 13-278 19-256 (327)
20 1vm7_A Ribokinase; TM0960, str 100.0 6.4E-31 2.2E-35 229.2 20.8 220 16-278 15-239 (311)
21 2hlz_A Ketohexokinase; non-pro 100.0 1.8E-30 6.3E-35 226.4 23.6 221 14-276 16-249 (312)
22 2nwh_A AGR_C_3442P, carbohydra 100.0 9E-31 3.1E-35 228.8 21.0 225 16-277 4-234 (317)
23 3ie7_A LIN2199 protein; phosph 100.0 2.8E-30 9.5E-35 226.0 21.3 221 17-279 3-235 (320)
24 4e69_A 2-dehydro-3-deoxyglucon 100.0 3.2E-30 1.1E-34 226.4 21.7 220 15-278 23-259 (328)
25 3pl2_A Sugar kinase, ribokinas 100.0 2.7E-30 9.1E-35 226.0 20.9 228 13-278 6-246 (319)
26 3iq0_A Putative ribokinase II; 100.0 5.9E-30 2E-34 224.9 22.5 227 16-278 4-241 (330)
27 3lhx_A Ketodeoxygluconokinase; 100.0 7.1E-30 2.4E-34 223.3 22.3 218 16-278 5-243 (319)
28 3ktn_A Carbohydrate kinase, PF 100.0 6.8E-30 2.3E-34 225.8 22.2 228 16-278 3-261 (346)
29 2qcv_A Putative 5-dehydro-2-de 100.0 1.5E-29 5.2E-34 222.3 23.9 229 14-276 10-251 (332)
30 1v1a_A 2-keto-3-deoxygluconate 100.0 2.6E-29 8.8E-34 218.8 21.7 217 17-276 3-229 (309)
31 3b1n_A Ribokinase, putative; r 100.0 1E-29 3.5E-34 223.0 19.1 225 17-278 2-233 (326)
32 3umo_A 6-phosphofructokinase i 100.0 5.2E-29 1.8E-33 216.8 23.2 221 16-278 2-237 (309)
33 2pkf_A Adenosine kinase; trans 100.0 1.9E-29 6.5E-34 222.0 18.4 229 15-278 10-246 (334)
34 1tyy_A Putative sugar kinase; 100.0 1.4E-29 4.8E-34 223.3 16.3 216 17-278 26-253 (339)
35 3cqd_A 6-phosphofructokinase i 100.0 1E-28 3.5E-33 214.9 21.3 220 17-278 3-237 (309)
36 2v78_A Fructokinase; transfera 100.0 4.6E-29 1.6E-33 217.6 18.0 220 17-278 3-239 (313)
37 2f02_A Tagatose-6-phosphate ki 100.0 2.5E-28 8.6E-33 213.9 21.6 222 16-278 3-238 (323)
38 2jg1_A Tagatose-6-phosphate ki 100.0 1.9E-28 6.3E-33 215.3 20.7 221 16-278 21-255 (330)
39 2ajr_A Sugar kinase, PFKB fami 100.0 7.5E-29 2.6E-33 217.9 17.7 226 14-278 11-253 (331)
40 2dcn_A Hypothetical fructokina 100.0 1.5E-28 5E-33 214.2 18.5 222 17-278 3-237 (311)
41 3ewm_A Uncharacterized sugar k 100.0 1.9E-28 6.4E-33 213.7 18.9 216 16-278 2-228 (313)
42 3bf5_A Ribokinase related prot 100.0 5.6E-29 1.9E-33 216.4 12.0 215 8-278 13-228 (306)
43 4e84_A D-beta-D-heptose 7-phos 100.0 2.6E-28 8.8E-33 216.1 15.0 229 12-279 50-288 (352)
44 2abq_A Fructose 1-phosphate ki 100.0 3.2E-27 1.1E-31 205.3 21.5 219 17-278 1-230 (306)
45 2qhp_A Fructokinase; NP_810670 100.0 8.6E-28 2.9E-32 207.8 16.7 196 76-278 21-228 (296)
46 2jg5_A Fructose 1-phosphate ki 100.0 1.2E-26 4.1E-31 201.5 21.6 218 18-278 2-230 (306)
47 3kd6_A Carbohydrate kinase, PF 99.9 4.9E-26 1.7E-30 198.4 22.3 212 16-278 3-219 (313)
48 2afb_A 2-keto-3-deoxygluconate 99.9 3.7E-26 1.3E-30 202.3 21.3 202 73-278 38-273 (351)
49 4gm6_A PFKB family carbohydrat 99.9 7.7E-25 2.6E-29 193.8 19.5 193 16-243 25-229 (351)
50 1vk4_A PFKB carbohydrate kinas 99.9 1.7E-24 5.9E-29 187.4 11.6 208 15-276 11-226 (298)
51 2yxt_A Pyridoxal kinase; beta 99.3 4.8E-12 1.6E-16 109.7 7.5 157 96-274 12-201 (312)
52 2ddm_A Pyridoxine kinase; pyri 99.1 7.9E-11 2.7E-15 100.6 8.4 167 93-278 19-215 (283)
53 1jxh_A Phosphomethylpyrimidine 98.9 1.7E-09 5.7E-14 92.6 6.4 105 171-278 95-216 (288)
54 1ub0_A THID, phosphomethylpyri 98.6 2.4E-07 8.3E-12 77.6 10.3 106 170-278 70-191 (258)
55 2i5b_A Phosphomethylpyrimidine 98.5 5.8E-07 2E-11 75.9 10.9 106 170-278 74-197 (271)
56 3zs7_A Pyridoxal kinase; trans 98.4 8.7E-07 3E-11 76.1 8.2 99 169-270 75-190 (300)
57 3pzs_A PM kinase, pyridoxamine 98.3 1.2E-06 4E-11 74.9 7.9 109 168-278 75-205 (289)
58 3h74_A Pyridoxal kinase; PSI-I 98.3 2.8E-06 9.7E-11 72.2 10.2 106 170-278 74-197 (282)
59 3mbh_A Putative phosphomethylp 98.3 1.2E-06 4.3E-11 74.8 7.6 105 170-276 77-203 (291)
60 1ekq_A Hydroxyethylthiazole ki 98.2 3.2E-06 1.1E-10 71.6 7.3 110 166-278 54-179 (272)
61 1v8a_A Hydroxyethylthiazole ki 97.8 3.3E-05 1.1E-09 64.9 6.4 109 166-278 52-176 (265)
62 3drw_A ADP-specific phosphofru 97.8 0.00031 1.1E-08 63.3 12.4 211 15-242 27-319 (474)
63 3rm5_A Hydroxymethylpyrimidine 97.5 0.00026 8.9E-09 65.7 9.0 97 170-270 91-203 (550)
64 1gc5_A ADP-dependent glucokina 97.5 0.00086 2.9E-08 60.4 11.6 155 77-240 117-313 (467)
65 1ua4_A Glucokinase, ADP-depend 97.5 0.0015 5.3E-08 58.7 12.8 157 76-241 108-301 (455)
66 1l2l_A ADP-dependent glucokina 97.5 0.00037 1.3E-08 62.6 8.6 154 77-239 112-302 (457)
67 3dzv_A 4-methyl-5-(beta-hydrox 97.3 0.0018 6.2E-08 54.4 10.8 76 166-243 54-133 (273)
68 3hpd_A Hydroxyethylthiazole ki 96.8 0.0023 7.8E-08 53.5 6.5 75 166-242 52-130 (265)
69 3nl6_A Thiamine biosynthetic b 96.6 0.0091 3.1E-07 55.0 9.5 77 166-243 301-380 (540)
70 3rss_A Putative uncharacterize 96.5 0.0065 2.2E-07 55.5 7.8 104 166-277 316-424 (502)
71 2r3b_A YJEF-related protein; p 95.9 0.011 3.8E-07 50.6 6.0 99 167-275 108-214 (310)
72 3rpz_A ADP/ATP-dependent NAD(P 95.9 0.0092 3.2E-07 50.3 5.1 101 167-277 95-199 (279)
73 3bgk_A SMU.573, putative uncha 95.2 0.015 5.1E-07 49.8 4.1 100 167-275 122-230 (311)
74 3tsm_A IGPS, indole-3-glycerol 60.3 70 0.0024 26.3 10.9 65 162-234 134-198 (272)
75 1y81_A Conserved hypothetical 58.9 48 0.0017 23.9 11.2 82 100-206 17-103 (138)
76 3k5w_A Carbohydrate kinase; 11 58.8 8.5 0.00029 34.7 4.1 62 168-242 290-353 (475)
77 3tz6_A Aspartate-semialdehyde 56.5 37 0.0013 29.0 7.6 92 95-207 2-96 (344)
78 1i4n_A Indole-3-glycerol phosp 52.3 38 0.0013 27.5 6.7 68 163-238 116-184 (251)
79 1id1_A Putative potassium chan 51.9 32 0.0011 25.0 5.8 115 102-231 8-124 (153)
80 4a29_A Engineered retro-aldol 51.6 20 0.00069 29.3 4.8 65 165-237 121-185 (258)
81 2duw_A Putative COA-binding pr 50.3 70 0.0024 23.2 8.7 100 106-234 26-126 (145)
82 3fwz_A Inner membrane protein 48.3 50 0.0017 23.6 6.3 116 101-235 11-128 (140)
83 3pwk_A Aspartate-semialdehyde 46.4 1E+02 0.0034 26.6 8.8 92 96-207 4-97 (366)
84 3qja_A IGPS, indole-3-glycerol 43.7 31 0.0011 28.4 5.0 63 163-233 128-190 (272)
85 2fq6_A Cystathionine beta-lyas 42.7 88 0.003 27.2 8.1 37 170-206 167-208 (415)
86 2aef_A Calcium-gated potassium 42.2 56 0.0019 25.6 6.2 114 101-235 13-128 (234)
87 4h3d_A 3-dehydroquinate dehydr 42.0 1.4E+02 0.0047 24.2 10.1 92 170-272 113-215 (258)
88 2fcj_A Small toprim domain pro 41.5 33 0.0011 24.4 4.1 77 170-256 26-102 (119)
89 1t4b_A Aspartate-semialdehyde 41.4 1.7E+02 0.0058 25.1 9.5 37 168-207 63-100 (367)
90 1iuk_A Hypothetical protein TT 40.5 1E+02 0.0034 22.2 9.0 98 106-233 26-125 (140)
91 3fdb_A Beta C-S lyase, putativ 38.6 1.7E+02 0.0057 24.2 9.2 47 159-205 139-191 (377)
92 2hjs_A USG-1 protein homolog; 38.2 1.7E+02 0.0057 24.7 8.9 36 168-207 66-101 (340)
93 2re2_A Uncharacterized protein 37.8 21 0.00071 26.0 2.7 39 79-124 65-103 (136)
94 3ndn_A O-succinylhomoserine su 36.9 1.1E+02 0.0038 26.5 7.8 38 169-206 165-205 (414)
95 1pii_A N-(5'phosphoribosyl)ant 35.1 85 0.0029 27.9 6.6 66 165-238 125-190 (452)
96 2d59_A Hypothetical protein PH 34.8 1.3E+02 0.0043 21.7 11.7 106 96-232 24-131 (144)
97 2raf_A Putative dinucleotide-b 34.7 1.5E+02 0.0053 22.7 8.4 25 99-123 21-45 (209)
98 3dr3_A N-acetyl-gamma-glutamyl 33.8 2.2E+02 0.0074 24.1 9.5 35 169-207 74-108 (337)
99 2r00_A Aspartate-semialdehyde 33.0 1.6E+02 0.0053 24.9 7.8 89 100-207 6-98 (336)
100 3e5d_A Putative glyoxalase I; 32.7 1E+02 0.0035 20.7 5.7 41 109-149 85-125 (127)
101 3o1n_A 3-dehydroquinate dehydr 30.8 2.2E+02 0.0075 23.3 10.0 90 171-271 134-234 (276)
102 3can_A Pyruvate-formate lyase- 30.8 1.6E+02 0.0055 21.7 9.1 36 172-207 5-42 (182)
103 3ri6_A O-acetylhomoserine sulf 30.3 1.2E+02 0.0042 26.4 7.0 36 170-205 167-205 (430)
104 2g1u_A Hypothetical protein TM 30.3 1.5E+02 0.0052 21.2 8.9 97 101-207 23-121 (155)
105 3q58_A N-acetylmannosamine-6-p 30.2 94 0.0032 24.7 5.6 58 167-232 98-156 (229)
106 3pzr_A Aspartate-semialdehyde 29.9 2.4E+02 0.0082 24.2 8.5 39 166-207 60-99 (370)
107 2p7o_A Glyoxalase family prote 29.3 91 0.0031 21.3 5.0 44 109-152 79-122 (133)
108 3qhx_A Cystathionine gamma-syn 29.3 1E+02 0.0035 26.3 6.2 36 170-205 151-189 (392)
109 3igs_A N-acetylmannosamine-6-p 29.1 1E+02 0.0035 24.5 5.7 58 167-232 98-156 (232)
110 3l7t_A SMU.1112C, putative unc 27.1 1.2E+02 0.004 20.4 5.3 40 109-148 92-131 (134)
111 2pv7_A T-protein [includes: ch 27.1 1.3E+02 0.0045 24.6 6.3 24 100-123 24-48 (298)
112 2wqp_A Polysialic acid capsule 26.0 1.7E+02 0.0058 25.0 6.7 48 181-236 88-135 (349)
113 2p25_A Glyoxalase family prote 25.8 1.5E+02 0.0051 19.6 5.9 39 110-148 85-123 (126)
114 3ghj_A Putative integron gene 25.6 1.1E+02 0.0037 21.5 4.9 41 109-149 98-138 (141)
115 3g8r_A Probable spore coat pol 25.4 1.5E+02 0.0053 25.3 6.4 47 181-235 75-121 (350)
116 3f8d_A Thioredoxin reductase ( 25.4 1E+02 0.0035 24.9 5.3 47 78-125 23-89 (323)
117 3l9w_A Glutathione-regulated p 24.6 95 0.0032 27.1 5.1 112 102-232 9-122 (413)
118 2dha_A FLJ20171 protein; RRM d 24.4 1.3E+02 0.0045 21.1 5.0 43 77-120 6-48 (123)
119 3uh9_A Metallothiol transferas 24.4 1.2E+02 0.0042 21.1 5.0 43 109-151 76-118 (145)
120 3jtx_A Aminotransferase; NP_28 23.7 1.7E+02 0.0059 24.4 6.6 37 169-205 167-209 (396)
121 4gx0_A TRKA domain protein; me 23.4 4E+02 0.014 23.9 9.5 93 99-206 350-444 (565)
122 2l82_A Designed protein OR32; 23.4 1.9E+02 0.0065 20.0 6.7 68 166-236 73-140 (162)
123 3nmy_A Xometc, cystathionine g 23.3 2.6E+02 0.009 23.8 7.8 36 170-205 152-190 (400)
124 1xqa_A Glyoxalase/bleomycin re 23.0 1.6E+02 0.0053 19.3 5.2 38 109-149 74-111 (113)
125 2dh2_A 4F2 cell-surface antige 22.9 86 0.0029 27.4 4.5 34 172-205 70-103 (424)
126 1wza_A Alpha-amylase A; hydrol 22.8 94 0.0032 27.6 4.8 24 182-205 80-103 (488)
127 4fgs_A Probable dehydrogenase 22.6 1.9E+02 0.0064 23.6 6.3 60 169-233 52-111 (273)
128 1ys4_A Aspartate-semialdehyde 22.6 97 0.0033 26.3 4.7 37 167-207 79-116 (354)
129 3meb_A Aspartate aminotransfer 22.3 3.4E+02 0.011 23.4 8.4 25 181-205 219-243 (448)
130 2wfb_A Putative uncharacterize 22.0 41 0.0014 23.5 1.8 41 78-124 52-92 (120)
131 1lwj_A 4-alpha-glucanotransfer 21.9 87 0.003 27.4 4.3 24 182-205 68-91 (441)
132 2l8b_A Protein TRAI, DNA helic 21.7 1.1E+02 0.0039 23.6 4.3 36 169-204 120-157 (189)
133 3h7a_A Short chain dehydrogena 21.7 1.4E+02 0.0049 23.5 5.3 48 78-128 16-63 (252)
134 4aie_A Glucan 1,6-alpha-glucos 21.6 85 0.0029 28.1 4.3 24 182-205 78-101 (549)
135 4gqr_A Pancreatic alpha-amylas 21.6 66 0.0023 28.2 3.5 24 182-205 75-98 (496)
136 4fn4_A Short chain dehydrogena 20.9 3.2E+02 0.011 21.8 7.4 59 169-232 30-91 (254)
137 1evl_A Threonyl-tRNA synthetas 20.7 4E+02 0.014 22.8 8.4 67 168-238 296-362 (401)
138 3uf0_A Short-chain dehydrogena 20.6 1.8E+02 0.006 23.4 5.7 45 79-127 41-85 (273)
139 3c85_A Putative glutathione-re 20.4 2.6E+02 0.0088 20.5 7.4 59 168-236 103-163 (183)
140 3mvn_A UDP-N-acetylmuramate:L- 20.4 2.6E+02 0.0088 20.4 8.8 95 174-271 39-150 (163)
141 3r1i_A Short-chain type dehydr 20.4 1.6E+02 0.0054 23.7 5.4 46 79-127 42-87 (276)
142 3kbq_A Protein TA0487; structu 20.3 1.4E+02 0.0048 22.5 4.7 35 81-118 24-58 (172)
143 3ctl_A D-allulose-6-phosphate 20.3 84 0.0029 25.0 3.6 55 169-230 79-133 (231)
No 1
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A*
Probab=100.00 E-value=1.4e-38 Score=282.16 Aligned_cols=252 Identities=28% Similarity=0.399 Sum_probs=223.0
Q ss_pred CCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcC
Q 023557 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (280)
Q Consensus 15 ~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG 94 (280)
..+|+++| ++++|+++++++.+|+++.+++|++++++.+....++..+. +....+||+++|+|+++++ ||
T Consensus 25 ~~~v~~iG-~~~vD~~~~v~~~~l~~~~l~~g~~~li~~~~~~~l~~~~~--------~~~~~~GG~~~N~A~~la~-LG 94 (352)
T 4e3a_A 25 RFDVLTVG-NAIVDIISRCNDQFLIDNQITKAAMNLIDAERAELLYSRMG--------PALEASGGSAGNTAAGVAN-LG 94 (352)
T ss_dssp SEEEEEEC-CCEEEEEEECCHHHHHHTTCCTTSEEECCHHHHHHHHHHSC--------SCEEEECCHHHHHHHHHHH-HT
T ss_pred cccEEEEC-CceeeEEEecCHHHHHHcCCCCCcceEeCHHHHHHHHHHhh--------hccEecCCHHHHHHHHHHH-cC
Confidence 57899999 99999999999999999999999999999999999998765 5678999999999999997 99
Q ss_pred CcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcE
Q 023557 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKW 173 (280)
Q Consensus 95 ~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (280)
.++.++|.+|+|.+|+.+++.|++.||+++++...++ +|++|+++++++|+|++..+.++...++++++..+.++++++
T Consensus 95 ~~~~~ig~vG~D~~G~~l~~~l~~~GV~~~~~~~~~~~~T~~~~v~v~~~g~r~~~~~~ga~~~l~~~~~~~~~~~~~~~ 174 (352)
T 4e3a_A 95 GKAAYFGNVAADQLGDIFTHDIRAQGVHYQTKPKGAFPPTARSMIFVTEDGERSMNTYLGACVELGPEDVEADVVADAKV 174 (352)
T ss_dssp CCEEEECCCCSSHHHHHHHHHHHHTTCEECCCCCCSSSCCEEEEEEECTTSCEEEEEECGGGGGCCGGGCCHHHHHTEEE
T ss_pred CCeEEEEEECCChHHHHHHHHHHHcCCccceeeccCCCCCeEEEEEEcCCCceEEEeccChhhcCChhhCCHHHHhhCCE
Confidence 9999999999999999999999999999999887654 799999999999999998888888889998888888899999
Q ss_pred EEEE-ecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHH
Q 023557 174 LVLR-FGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSE 249 (280)
Q Consensus 174 v~i~-~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~ 249 (280)
+|++ +.. .+.+.+.++++.+++.|+++++|++.+.....+++.+.++++.+++|++++|++|+..+++. ++++
T Consensus 175 v~~~G~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~ll~~~~~dil~~N~~Ea~~l~g~---~~~~ 251 (352)
T 4e3a_A 175 TYFEGYLWDPPRAKEAILDCARIAHQHGREMSMTLSDSFCVDRYRGEFLDLMRSGKVDIVFANRQEALSLYQT---DDFE 251 (352)
T ss_dssp EEEEGGGGSSSSHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHTTSCCEEEEEHHHHHHHTTC---SCHH
T ss_pred EEEeeeecCCchHHHHHHHHHHHHHHcCCEEEEECCchhhHHHHHHHHHHHhcccCCcEEEeCHHHHHHHhCC---CCHH
Confidence 9999 432 24678899999999999999999998765566677777777411599999999999999985 4677
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEeCCcc
Q 023557 250 AALEFLAKRCQWAVVTLGPNGCIAKHGKEV 279 (280)
Q Consensus 250 ~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~~ 279 (280)
++++.+.++++.++||+|++|+++++++++
T Consensus 252 ~a~~~l~~~~~~vvvT~G~~G~~~~~~~~~ 281 (352)
T 4e3a_A 252 EALNRIAADCKIAAVTMSENGAVILKGRER 281 (352)
T ss_dssp HHHHHHHHHSSEEEEECGGGCEEEEETTEE
T ss_pred HHHHHHhcCCCEEEEEECCCceEEEECCEE
Confidence 888877778899999999999999987653
No 2
>3uq6_A Adenosine kinase, putative; ribokinase, transferase; HET: ADN AMP; 2.30A {Schistosoma mansoni} PDB: 3uq9_A*
Probab=100.00 E-value=6.4e-38 Score=279.94 Aligned_cols=254 Identities=17% Similarity=0.241 Sum_probs=214.7
Q ss_pred CCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhc
Q 023557 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (280)
Q Consensus 14 ~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~l 93 (280)
++..|++|| |++||+++++|++||+++.+++|.+++++ ++...++.++... .+..+.+||+++|+|+++++ |
T Consensus 25 ~~~~v~giG-nalvDi~~~v~d~~l~~~~l~kg~m~l~~-~~~~~~~~~~~~~-----~~~~~~~GGsa~N~a~~la~-L 96 (372)
T 3uq6_A 25 SEGYVFGMG-NPLLDIIVDADDFMYRKYNLKKDNIVLAE-EKHMTIYDEIQKK-----KKLNYIAGGATLNTVKMIQW-I 96 (372)
T ss_dssp CTTCEEEEE-CCEEEEEEECCTHHHHHTTCCTTEEEECC-GGGTTHHHHHHTS-----SSCEEEECCHHHHHHHHHHH-H
T ss_pred CCCeEEEEC-CceeeEEEEeCHHHHHHcCCCCCceEEcC-HHHHHHHHHHhcc-----CCeEEeCCcHHHHHHHHHHH-c
Confidence 466799999 99999999999999999999999999988 5555666665543 25788999999999999997 9
Q ss_pred CCc---EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcccCcc----
Q 023557 94 GVP---CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA---- 165 (280)
Q Consensus 94 G~~---~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~---- 165 (280)
|.+ +.|+|.+|+|.+|+++++.|++.||+++++...+. +|+.|+++++ +++|+++.+.++...+++++++.
T Consensus 97 G~~~~~~~fiG~VG~D~~G~~l~~~L~~~GV~~~~~~~~~~~~T~~~~v~~~-dgert~~~~~ga~~~l~~~~i~~~~~~ 175 (372)
T 3uq6_A 97 IQKPFVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPLMTGKVAVLVS-EKLRSMVTYLGAACDLSLAHIEQPHVW 175 (372)
T ss_dssp HCSTTSEEEEEEECSSHHHHHHHHHHHHTTCEECCEECCTTCCEEEEEEEEC-SSCEEEEEEEEGGGGCCHHHHTSHHHH
T ss_pred CCCCCcEEEEeeecCCHHHHHHHHHHHHcCCCceeeeecCCCCceEEEEEcC-CCceEEEEeccchhhcchhhhhhhhHH
Confidence 965 89999999999999999999999999998887665 6888888886 89999999999988888887763
Q ss_pred cccCCCcEEEEE-ecC-CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCC
Q 023557 166 EDVKGSKWLVLR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGE 243 (280)
Q Consensus 166 ~~~~~~~~v~i~-~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~ 243 (280)
+.+++++++|++ +.. ..++.+.++++.+++.|+++++|++.+...+.+++.+.++++ ++|++++|++|++.|++..
T Consensus 176 ~~i~~a~~~~~~g~~~~~~~~~~~~~~~~a~~~g~~v~ldls~~~~~~~~~~~l~~ll~--~~Dil~~Ne~Ea~~l~~~~ 253 (372)
T 3uq6_A 176 SLVEKAQVYYIAGFVINTCYEGMLKIAKHSLENEKLFCFNLSAPFLSQFNTKEVDEMIS--YSNIVFGNESEAEAYGEVH 253 (372)
T ss_dssp HHHHHCSEEEEEGGGHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCHHHHHHHHT--TCSEEEEEHHHHHHHHHHT
T ss_pred HHhhcccEEEEecccccccHHHHHHHHHHHHHcCCeEeeccccchhhhhhHHHHHHHhh--cCCcccCCHHHHHHHhCCC
Confidence 467889999999 432 246778899999999999999999998877788888999998 8999999999999998754
Q ss_pred C--CCcHHHHHHHHh--------cCCCEEEEEcCCCceEEEeCCc
Q 023557 244 E--NADSEAALEFLA--------KRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 244 ~--~~~~~~~~~~l~--------~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
. .++.+++.+.+. .+.+.+|||+|++|++++++++
T Consensus 254 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~ 298 (372)
T 3uq6_A 254 GLLEDTVHATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSD 298 (372)
T ss_dssp TCCSSHHHHHHHHHHHSCCTTCCCCCCEEEEEETTEEEEEEESSC
T ss_pred CCchhHHHHHHHHHhhhhhhhhcCCceEEEEcCCCCceEEecCCC
Confidence 2 345666665542 3568999999999999987653
No 3
>3otx_A Adenosine kinase, putative; AP5A, transferase-transferase inhibitor CO; HET: AP5; 1.55A {Trypanosoma brucei} PDB: 2xtb_A*
Probab=100.00 E-value=4.2e-37 Score=272.26 Aligned_cols=255 Identities=18% Similarity=0.238 Sum_probs=213.7
Q ss_pred CCCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhh
Q 023557 13 SQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (280)
Q Consensus 13 ~~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~ 92 (280)
+...+|+++| ++++|+++.++++||+++++++|.+.+++ ++....+.+... ..+....+||+++|+|+++++
T Consensus 5 ~~~~~v~~iG-~~~lD~~~~v~~~~l~~~~l~~g~~~l~~-~~~~p~~~~~~~-----~~~~~~~~GG~~~N~a~~la~- 76 (347)
T 3otx_A 5 SAPLRVYVQC-NPLLDVSAHVSDEFLVKYGLERGTAILLS-ERQKGIFDDIEK-----MPNVRYVPGGSGLNVARVAQW- 76 (347)
T ss_dssp -CCCCEEEEC-CCEEEEEEECCHHHHHHTTCCTTCEEECC-GGGTTHHHHHHT-----STTCEEEECCHHHHHHHHHHH-
T ss_pred cCCCcEEEEC-CceeeEEEecCHHHHHHcCCCCCceEEcC-HHHHHHHHHHhc-----cCCeEEecCCHHHHHHHHHHH-
Confidence 3567899999 99999999999999999999999999988 333333333221 136789999999999999997
Q ss_pred c----CCc-EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcc--
Q 023557 93 F----GVP-CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA-- 165 (280)
Q Consensus 93 l----G~~-~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~-- 165 (280)
| |.+ +.++|.+|+|.+|+.+++.|++.||+++++...+.+|++|+++++ +|+|+++.+.++...++++++..
T Consensus 77 L~~~~G~~~~~~ig~vG~D~~g~~~~~~l~~~GV~~~~~~~~~~~T~~~~i~~~-~g~r~~~~~~ga~~~~~~~~~~~~~ 155 (347)
T 3otx_A 77 MQQAYKGKFVTYVGCIADDRYGKVLKEAAEHEGIVMAVEHTTKAGSGACAVCIT-GKERTLVADLGAANHLSSEHMRSPA 155 (347)
T ss_dssp TTGGGTTSSEEEECEECSSHHHHHHHHHHHHHTCEECCEECSSSCEEEEEEEEE-TTEEEEEEEEEGGGGCCHHHHTSHH
T ss_pred hcccCCCCeEEEEEEecCChHHHHHHHHHHHCCCceecccCCCCCCeEEEEEEE-CCceeeeechhhhhcCCHHHcCchh
Confidence 9 999 999999999999999999999999999998655458999999998 89999988888887888877763
Q ss_pred --cccCCCcEEEEE-ecC-CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhc
Q 023557 166 --EDVKGSKWLVLR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 166 --~~~~~~~~v~i~-~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
+.+++++++|++ +.. .+++.+.++++.+++.|+++++|++.+.....+++.+.++++ ++|++++|++|+..+++
T Consensus 156 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~l~~~l~--~~dil~~N~~Ea~~l~~ 233 (347)
T 3otx_A 156 VVRAMDESRIFYFSGFTLTVDVNHVLQACRKAREVDGLFMINLSAPFIMQFFSAQLGEVLP--YTDIIVANRHEAKEFAN 233 (347)
T ss_dssp HHHHHHHCSEEEEEGGGGGTCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCHHHHHHHGG--GCSEEEEEHHHHHHHHH
T ss_pred hHHHHhhCCEEEEeeeecccCHHHHHHHHHHHHHhCCEEEeeCchhhhHHHHHHHHHHHHh--hCCEEecCHHHHHHHhc
Confidence 567899999999 332 578899999999999999999999976555566788888998 89999999999999986
Q ss_pred CC--CCCcHHHHHHHHh-------cCCCEEEEEcCCCceEEEeCCc
Q 023557 242 GE--ENADSEAALEFLA-------KRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 242 ~~--~~~~~~~~~~~l~-------~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
.. ..++++++++.+. .+++.+|||+|++|++++++++
T Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvT~G~~Ga~~~~~~~ 279 (347)
T 3otx_A 234 MMKWDTDCVEEIARRAVSEVPYTGTKGRVVVFTRDIESTVLATKDG 279 (347)
T ss_dssp HHTCCCCCHHHHHHHHHHTSCCCCSSCCEEEEEETTEEEEEEETTE
T ss_pred ccCCCcCCHHHHHHHHHhhhccccCCCCEEEEEeCCCCeEEEECCe
Confidence 42 2246777777664 5789999999999999998764
No 4
>3vas_A Putative adenosine kinase; ribokinase, enzyme, transferase; HET: ADN; 2.26A {Schistosoma mansoni} PDB: 4dc3_A* 3vaq_A* 3uq6_A* 3uq9_A*
Probab=100.00 E-value=1.2e-36 Score=271.55 Aligned_cols=253 Identities=17% Similarity=0.238 Sum_probs=211.4
Q ss_pred CCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhc-
Q 023557 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF- 93 (280)
Q Consensus 15 ~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~l- 93 (280)
..+|+++| ++++|+++.++++||+++.+.+|.+.+++ ++......+.. ...+....+||+++|+|+++++ |
T Consensus 24 ~~~v~~iG-~~~vD~~~~v~~~~l~~~~l~~g~~~l~~-~~~~P~~ge~~-----~~~~~~~~~GG~~~N~A~~la~-L~ 95 (370)
T 3vas_A 24 EGYVFGMG-NPLLDIIVDADDFMYRKYNLKKDNIVLAE-EKHMTIYDEIQ-----KKKKLNYIAGGATLNTVKMIQW-II 95 (370)
T ss_dssp TTCEEEEE-CCEEEEEEECCTHHHHHTTCCTTEEEECC-GGGTHHHHHHT-----TSSSCEEEEECHHHHHHHHHHH-HH
T ss_pred CccEEEEC-CcceeEEEecCHHHHHHcCCCCCceEEcc-HHHHHHHHHHh-----hcCCeEEecCCHHHHHHHHHHH-hc
Confidence 56899999 99999999999999999999999999986 22222222221 1136889999999999999997 9
Q ss_pred --CCcEEEEEeecCChhHHHHHHHHHhCCCccceeee-CCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcc----c
Q 023557 94 --GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM-KRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA----E 166 (280)
Q Consensus 94 --G~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~-~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~----~ 166 (280)
|.++.++|.+|+|.+|+.+++.|++.||+++++.. ...+|++|+++++ +|+|+++.+.++...+++++++. +
T Consensus 96 ~~G~~~~~ig~vG~D~~G~~~~~~L~~~GV~~~~~~~~~~~~Tg~~~i~v~-~g~rt~~~~~ga~~~l~~~~~~~~~~~~ 174 (370)
T 3vas_A 96 QKPFVCSYVGCIGADIQGKYIKNDCSALDLVTEFQIAEEPLMTGKVAVLVS-EKLRSMVTYLGAACDLSLAHIEQPHVWS 174 (370)
T ss_dssp CCTTCEEEEEEECSSHHHHHHHHHHHHTTCEECCEECCTTCCEEEEEEEEC-SSCEEEEEEEEGGGGCCHHHHTSHHHHH
T ss_pred CCCCcEEEEEEEcCChhHHHHHHHHHHcCCcccccccCCCCCceEEEEEEe-CCceeEEEccchhhhCCHHHcCchhhHH
Confidence 99999999999999999999999999999999887 4458999999998 89999988888888888887764 5
Q ss_pred ccCCCcEEEEE-ecC-CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCC
Q 023557 167 DVKGSKWLVLR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE 244 (280)
Q Consensus 167 ~~~~~~~v~i~-~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~ 244 (280)
.++++++||++ +.. .+++.+.++++.+++.|+++++|++++.....+++.+.++++ .+|++++|++|+..+++...
T Consensus 175 ~~~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~ld~~~~~~~~~~~~~l~~ll~--~~dil~~N~~Ea~~l~g~~~ 252 (370)
T 3vas_A 175 LVEKAQVYYIAGFVINTCYEGMLKIAKHSLENEKLFCFNLSAPFLSQFNTKEVDEMIS--YSNIVFGNESEAEAYGEVHG 252 (370)
T ss_dssp HHHHCSEEEEEGGGHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCHHHHHHHHT--TCSEEEEEHHHHHHHHHHTT
T ss_pred HHhhCCEEEEEeeeccCCHHHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHHHh--hCCEEEcCHHHHHHHhcccC
Confidence 67899999998 332 357888999999999999999999876544556677888888 89999999999999987532
Q ss_pred --CCcHHHHHHHHhc--------CCCEEEEEcCCCceEEEe--CCc
Q 023557 245 --NADSEAALEFLAK--------RCQWAVVTLGPNGCIAKH--GKE 278 (280)
Q Consensus 245 --~~~~~~~~~~l~~--------~~~~vvvT~G~~Ga~~~~--~~~ 278 (280)
.++++++++.+.. +++.||||+|++|+++++ +++
T Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~g~~~VvvT~G~~Ga~~~~~~~~~ 298 (370)
T 3vas_A 253 LLEDTVHATARYIADLPFADGKKRKRLVIITRGKNPLLYTDSSDSE 298 (370)
T ss_dssp CCSSHHHHHHHHHHHSCCTTCCCCCCEEEEEETTEEEEEEETTCSS
T ss_pred CCccCHHHHHHHHHhhcccccccCCCEEEEecCCCceEEEEcCCCe
Confidence 2467777776643 889999999999999998 554
No 5
>3loo_A Anopheles gambiae adenosine kinase; AP4A, P4-DI(adenosi tetraphosphate, transferase; HET: B4P; 2.00A {Anopheles gambiae}
Probab=100.00 E-value=7.2e-36 Score=266.05 Aligned_cols=254 Identities=23% Similarity=0.335 Sum_probs=209.2
Q ss_pred CCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhc
Q 023557 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (280)
Q Consensus 14 ~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~l 93 (280)
++.+|+++| |+++|+++.+++.||+++.+.+|.+.+.+ +.....+.+.... .+....+||+++|+|+++++ |
T Consensus 22 ~~~~v~~iG-~~~vD~~~~v~~~~l~~~~l~~g~~~l~~-~~~~p~~~e~~~~-----~~~~~~~GG~~~N~a~~~~~-L 93 (365)
T 3loo_A 22 RDGMLVGLG-NPLLDISAVVEKDLLNKYDMQPNNAILAE-EKHMPMYQELIEK-----YQAEYIAGGSVQNSLRVAQW-I 93 (365)
T ss_dssp CTTSEEEEC-CCEEEEEEECCHHHHHHTTCCSSEEEECC-GGGTHHHHHHHHH-----HCCEEEEECHHHHHHHHHHH-H
T ss_pred CCccEEEEC-CCeEeEEEecCHHHHHHcCCCCCCceech-hHHHHHHHHHhhc-----CCeEEecCCHHHHHHHHHHH-h
Confidence 356799999 99999999999999999999999998854 2222222221100 15788999999999999986 6
Q ss_pred ---CCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcc----c
Q 023557 94 ---GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA----E 166 (280)
Q Consensus 94 ---G~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~----~ 166 (280)
|.++.++|.+|+|.+|+.+++.|++.||+++++...+.+|++|+++++ +++|+++.+.++...+++++++. +
T Consensus 94 ~~lG~~~~~ig~vG~D~~g~~~~~~l~~~GV~~~~~~~~~~~Tg~~~i~~~-~~~r~~~~~~ga~~~~~~~~~~~~~~~~ 172 (365)
T 3loo_A 94 LQRPRTAIFFGCVGQDEYARILEERATSNGVNVQYQRSATSPTGTCAVLVT-GTQRSLCANLAAANDFTPEHLRSDGNRA 172 (365)
T ss_dssp HTCTTSEEEEEEEESBHHHHHHHHHHHHHTCEEEEEEESSSCCEEEEEEEE-TTEEEEEEECGGGGGCCGGGGGSHHHHH
T ss_pred hcCCCcEEEEEEecCCchHHHHHHHHHHCCCceeccccCCCCCeEEEEEEE-CCceEEEeccchHhhCCHhHcCchhhHH
Confidence 999999999999999999999999999999998875458999999998 78999988888888888887763 5
Q ss_pred ccCCCcEEEEE-ecC-CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCC-
Q 023557 167 DVKGSKWLVLR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGE- 243 (280)
Q Consensus 167 ~~~~~~~v~i~-~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~- 243 (280)
.+++++++|++ +.. .+++.+.++++.+++.|+++++|++.+.....+++.+.++++ ++|++++|++|++.+++..
T Consensus 173 ~~~~~~~v~i~G~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~l~~~l~--~~dil~~N~~Ea~~l~g~~~ 250 (365)
T 3loo_A 173 YLQGAQFFYVSGFFFTVSFESALSVAKEAAATGRMFMMNLSAPFVPQFYKNNLEEIFP--YVDVLFGNETEAIALAKEFN 250 (365)
T ss_dssp HHHHCSEEEEEGGGHHHHHHHHHHHHHHHHHTTCEEEEECCSTHHHHHCHHHHHHHGG--GCSEEEEEHHHHHHHHHHTT
T ss_pred HHhhCCEEEEeeeeccCCHHHHHHHHHHHHHcCCEEEEECCchhhhHHHHHHHHHHHH--hCCEEecCHHHHHHHhcccC
Confidence 67899999999 332 357788999999999999999999876555566778888998 9999999999999998753
Q ss_pred -CCCcHHHHHHHHhc-------CCCEEEEEcCCCceEEE--eCCc
Q 023557 244 -ENADSEAALEFLAK-------RCQWAVVTLGPNGCIAK--HGKE 278 (280)
Q Consensus 244 -~~~~~~~~~~~l~~-------~~~~vvvT~G~~Ga~~~--~~~~ 278 (280)
..++++++++.+.. +++.+|||+|++|++++ ++++
T Consensus 251 ~~~~~~~~~~~~l~~~~~~~~~g~~~vvvT~G~~Ga~~~~~~~~~ 295 (365)
T 3loo_A 251 YGTEDLREIGKRIAALPKENGKRKRIVIITQGSDPVLLIEAGTDN 295 (365)
T ss_dssp CCCCCHHHHHHHHHTSCCSSTTSCCEEEEEETTEEEEEEETTCSC
T ss_pred CCCCCHHHHHHHHHhhhhhccCCCCEEEEEeCCCCEEEEEecCCe
Confidence 23567777776643 78999999999999999 5554
No 6
>1bx4_A Protein (adenosine kinase); human adenosine kinase, transferase; HET: ADN; 1.50A {Homo sapiens} SCOP: c.72.1.1 PDB: 2i6a_A* 2i6b_A*
Probab=100.00 E-value=3.1e-33 Score=247.17 Aligned_cols=250 Identities=21% Similarity=0.266 Sum_probs=201.7
Q ss_pred CCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCH----HHHHHHHHhccccCCCCCCCceeecCchHHHHHHHH
Q 023557 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAI----EELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGL 89 (280)
Q Consensus 14 ~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~l 89 (280)
++.+|+++| ++++|+++.++..++.+++..+|+..+++. ...+.+.. .+....+||+++|+|+++
T Consensus 5 ~~~~v~viG-~~~~D~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~----------~~~~~~~GG~~~NvA~~l 73 (345)
T 1bx4_A 5 RENILFGMG-NPLLDISAVVDKDFLDKYSLKPNDQILAEDKHKELFDELVKK----------FKVEYHAGGSTQNSIKVA 73 (345)
T ss_dssp CTTCEEEEC-CCEEEEEEECCHHHHHHTTCCSSEEEECCGGGHHHHHHHHHH----------SCCEEEEECHHHHHHHHH
T ss_pred ccccEEEEC-CcceeEEEecCHHHHHHcCCCCCcEEEchHHHHHHHHHHhcc----------CCceecCCcHHHHHHHHH
Confidence 467899999 999999999988889999988888776531 11111111 268899999999999999
Q ss_pred HhhcC----CcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcc-cCc
Q 023557 90 SVGFG----VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQAD-ELI 164 (280)
Q Consensus 90 a~~lG----~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~-~l~ 164 (280)
++ || .++.++|.+|+|.+|+.+++.|++.||+++++.....+|++++++++ +|+|+++.+.++...++++ +++
T Consensus 74 a~-lgg~~~~~~~~ig~vG~D~~G~~i~~~L~~~gv~~~~v~~~~~~T~~~~~~~~-~g~r~~~~~~~a~~~~~~~~~~~ 151 (345)
T 1bx4_A 74 QW-MIQQPHKAATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCAACIT-GDNRSLIANLAAANCYKKEKHLD 151 (345)
T ss_dssp HH-HHCSSTTCEEEEEEEESSHHHHHHHHHHHHTTCEEEEEEESSSCCCEEEEEEE-TTEEEEEEECGGGGGCCGGGTTT
T ss_pred HH-hcCCCCCcEEEEEEeCCChhHHHHHHHHHHcCCceeeeecCCCCCceEEEEEc-CCceEeeeccchHhhcCcccccC
Confidence 97 96 89999999999999999999999999999998765458999999988 7889887777777777777 665
Q ss_pred ----ccccCCCcEEEEE-ec-CCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHH
Q 023557 165 ----AEDVKGSKWLVLR-FG-MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAE 238 (280)
Q Consensus 165 ----~~~~~~~~~v~i~-~~-~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~ 238 (280)
.+.+++++++|++ +. ..+.+.+.++++.+++.|+++++|+++....+.+.+.+.++++ .+|++++|++|+..
T Consensus 152 ~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~--~~dil~~N~~E~~~ 229 (345)
T 1bx4_A 152 LEKNWMLVEKARVCYIAGFFLTVSPESVLKVAHHASENNRIFTLNLSAPFISQFYKESLMKVMP--YVDILFGNETEAAT 229 (345)
T ss_dssp SHHHHHHHHHCSEEEEEGGGGGTCHHHHHHHHHHHHHTTCEEEEECCSHHHHHHTHHHHHHHGG--GCSEEEEEHHHHHH
T ss_pred cHHHHHHHhhCCEEEEEEEeccCCHHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHhc--cCCEEeCCHHHHHH
Confidence 2456789999998 32 2577889999999999999999999865433334556777887 89999999999999
Q ss_pred HhcCC--CCCcHHHHHHHHhc-------CCCEEEEEcCCCceEEEeCCc
Q 023557 239 LVRGE--ENADSEAALEFLAK-------RCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 239 l~~~~--~~~~~~~~~~~l~~-------~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+++.. ..+++.++++.+.. +++.++||+|++|++++++++
T Consensus 230 l~g~~~~~~~~~~~~~~~l~~~~~~~~~g~~~vvvt~G~~G~~~~~~~~ 278 (345)
T 1bx4_A 230 FAREQGFETKDIKEIAKKTQALPKMNSKRQRIVIFTQGRDDTIMATESE 278 (345)
T ss_dssp HHHHTTCCCCCHHHHHHHHHTSCCSCTTSCCEEEEEETTEEEEEECSSC
T ss_pred HhcccCCCCCCHHHHHHHHHhcccccccCCCEEEEEeCCCCeEEEECCe
Confidence 98743 23467777765543 789999999999999987654
No 7
>3ry7_A Ribokinase; transferase; 2.15A {Staphylococcus aureus}
Probab=100.00 E-value=3.7e-33 Score=242.48 Aligned_cols=226 Identities=19% Similarity=0.281 Sum_probs=187.0
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcce-eeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcC
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSI-PVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG 94 (280)
.+|+++| ++++|+++.+ +++| ..|+.. .. .+....+||+++|+|+++++ ||
T Consensus 3 ~~v~viG-~~~~D~~~~~-----~~~p-~~g~~~~~~--------------------~~~~~~~GG~~~NvA~~la~-lG 54 (304)
T 3ry7_A 3 NKVVILG-STNVDQFLTV-----ERYA-QPGETLHVE--------------------EAQKAFGGGKGANQAIATAR-MQ 54 (304)
T ss_dssp CEEEEEC-CCEEEEEEEC-----SSCC-CTTCCCCCS--------------------SCCEEEEECHHHHHHHHHHH-TT
T ss_pred CcEEEEc-cceeEEEEec-----cCCC-CCCCceecc--------------------cceeecCCCHHHHHHHHHHH-CC
Confidence 4799999 9999999998 7777 344433 21 26889999999999999997 99
Q ss_pred CcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcccCcc--cccCCC
Q 023557 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA--EDVKGS 171 (280)
Q Consensus 95 ~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~--~~~~~~ 171 (280)
.++.++|.+|+|.+|+.+++.|++.||+++++.+.++ +|++++++++++|+|+++.+.++...+++++++. +.++++
T Consensus 55 ~~~~~~~~vG~D~~g~~i~~~l~~~gv~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~ga~~~~~~~~~~~~~~~~~~~ 134 (304)
T 3ry7_A 55 ADTTFITKIGTDGVADFILEDFKVAHIDTSYIIKTAEAKTGQAFITVNAEGQNTIYVYGGANMTMTPEDVINAKDAIINA 134 (304)
T ss_dssp CEEEEECEEESSCTTHHHHHHHHHTTCBCTTCEEESSSCCEEEEEEECSSCCEEEEEECGGGGGCCHHHHHTTHHHHHTC
T ss_pred CCeEEEEEeCCChHHHHHHHHHHHcCCcchhEEEcCCCCCcEEEEEECCCCCEEEEEecCchhcCCHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999987554 8999999999889999888888877788776653 468899
Q ss_pred cEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC--CcHH
Q 023557 172 KWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN--ADSE 249 (280)
Q Consensus 172 ~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~--~~~~ 249 (280)
+++|++.. .+.+.+.++++.+++.++++++|+++. ++.+.++++ .+|++++|++|+..+++.... +++.
T Consensus 135 ~~v~~~~~-~~~~~~~~~~~~a~~~~~~v~~D~~~~------~~~~~~ll~--~~dil~~N~~E~~~l~g~~~~~~~~~~ 205 (304)
T 3ry7_A 135 DFVVAQLE-VPIPAIISAFEIAKAHGVTTVLNPAPA------KALPNELLS--LIDIIVPNETEAELLSGIKVTNEQSMK 205 (304)
T ss_dssp SEEEEETT-SCHHHHHHHHHHHHHTTCEEEEECCSC------CCCCHHHHT--TCSEECCBHHHHHHHHSCCCCSHHHHH
T ss_pred CEEEEcCC-CCHHHHHHHHHHHHHcCCEEEEeCCcc------ccccHHHHH--hCCEEecCHHHHHHHhCCCCCChhHHH
Confidence 99999954 478889999999999999999999763 123345565 899999999999999986532 2344
Q ss_pred HHHHH-HhcCCCEEEEEcCCCceEEEeCCc
Q 023557 250 AALEF-LAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 250 ~~~~~-l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++++. ++.+++.++||+|++|++++++++
T Consensus 206 ~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 235 (304)
T 3ry7_A 206 DNANYFLSIGIKTVLITLGKQGTYFATKNQ 235 (304)
T ss_dssp HHHHHHHHTTCCEEEEECGGGCEEEECSSC
T ss_pred HHHHHHHHcCCCEEEEEeCCCceEEEECCe
Confidence 55554 456899999999999999988654
No 8
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=9.4e-33 Score=243.91 Aligned_cols=223 Identities=22% Similarity=0.307 Sum_probs=185.1
Q ss_pred CCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhc
Q 023557 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (280)
Q Consensus 14 ~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~l 93 (280)
..++|+++| ++++|+++.+ +++| ..|+.... .+....+||+++|+|+++++ |
T Consensus 28 ~~~~i~viG-~~~iD~~~~~-----~~~p-~~~~~~~~--------------------~~~~~~~GG~~~NvA~~la~-L 79 (343)
T 2rbc_A 28 GGKHVLCVG-AAVLDTLFRV-----ADMP-KGEGKVLP--------------------YEVLQIAEGMASSAAYAVHR-M 79 (343)
T ss_dssp CCCEEEEES-CCEEEEEEEC-----SSCC-CSSSCCCC--------------------SEEEEEEECHHHHHHHHHHH-T
T ss_pred cCCeEEEEC-cceEEEEeec-----CCCC-CCCCeEee--------------------eeeEEcCCcHHHHHHHHHHH-c
Confidence 346899999 9999999998 6666 33332221 25778999999999999997 9
Q ss_pred CCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCc
Q 023557 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSK 172 (280)
Q Consensus 94 G~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (280)
|.++.++|.+|+|.+|+.+++.|++.||+++++...++ +|++++++++++|+|+++.+.++...++++++..+.+++++
T Consensus 80 G~~~~~i~~vG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~T~~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~~~~l~~~~ 159 (343)
T 2rbc_A 80 GGRASLWGAVGDDETGTRILRDLSESGIDTSGMTVAPGARSALSTIIIDNRGERLIVPFYDHRLHEKKRACTPEDIALFD 159 (343)
T ss_dssp TCEEEEECEEESSHHHHHHHHHHHHTTEECTTCEEETTCCCEEEEEEECTTSCEEEEEECCGGGGSSCCCCCHHHHTTCS
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHcCCceeeEEEcCCCCCceEEEEECCCCCEEEEEcCCCcccCChhHhcHhhhCCCC
Confidence 99999999999999999999999999999999887544 79999999998899998777777666677777666788999
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHh-hccCCCceEEEcCHHHHHHHhcCCCCCcHHHH
Q 023557 173 WLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQ-LLESGDVDLCFANEDEAAELVRGEENADSEAA 251 (280)
Q Consensus 173 ~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~-~l~~~~~dil~~N~~E~~~l~~~~~~~~~~~~ 251 (280)
+||++.. .++.+.++++.+++.++++++|+.+. ++.+.+ +++ .+|++++|++|+..+++. +++.++
T Consensus 160 ~v~~~~~--~~~~~~~~~~~a~~~g~~v~~Dp~~~------~~~~~~~ll~--~~dil~~N~~Ea~~l~g~---~~~~~~ 226 (343)
T 2rbc_A 160 AVLVDVR--WPELALDVLTVARALGKPAILDGDVA------PVETLEGLAP--AATHIVFSEPAATRLTGL---ETVKDM 226 (343)
T ss_dssp EEEECSS--SHHHHHHHHHHHHHTTCCEEEEECSC------CHHHHHHHGG--GCSEEEEEHHHHHHHHCC---SSHHHH
T ss_pred EEEEcCC--CHHHHHHHHHHHHHCCCEEEEECCcc------ccccHHHHHh--cCCEEEeCHHHHHHHcCC---CCHHHH
Confidence 9999943 34678888999999999999999752 345666 777 899999999999999985 367776
Q ss_pred HHHH-hcCC-CEEEEEcCCCceEEEeCC
Q 023557 252 LEFL-AKRC-QWAVVTLGPNGCIAKHGK 277 (280)
Q Consensus 252 ~~~l-~~~~-~~vvvT~G~~Ga~~~~~~ 277 (280)
++.+ +.++ +.++||+|++|+++++++
T Consensus 227 ~~~l~~~g~~~~VvvT~G~~G~~~~~~~ 254 (343)
T 2rbc_A 227 LPVLHARYPQTFIAVTAGPAGCWWTEAD 254 (343)
T ss_dssp HHHHHHHSTTSEEEEECGGGCEEEECTT
T ss_pred HHHHHHhCCCceEEEEECCcceEEEeCC
Confidence 6655 5588 999999999999998765
No 9
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate conformation, signaling protein,transferase; HET: ACP; 1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A* 2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A* 1lik_A*
Probab=100.00 E-value=3.6e-32 Score=243.68 Aligned_cols=251 Identities=22% Similarity=0.282 Sum_probs=194.4
Q ss_pred cCCCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHh
Q 023557 12 ASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSV 91 (280)
Q Consensus 12 ~~~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~ 91 (280)
.+...+|+++| ++++|+++.++..++.+++..+|+....+ ++...++.+. +..+....+||+++|+|+++++
T Consensus 29 ~~~~~~vlviG-~~~lD~~~~~~~~~~~~~~~~~g~~~~~~-~~~~p~~~~~------~~~~~~~~~GG~~~NvA~~la~ 100 (383)
T 2abs_A 29 ATGPMRVFAIG-NPILDLVAEVPSSFLDEFFLKRGDATLAT-PEQMRIYSTL------DQFNPTSLPGGSALNSVRVVQK 100 (383)
T ss_dssp -CCCCCEEEEC-CCEEEEEEECCHHHHHHTTCCTTCEEECC-GGGGGGGGTG------GGGCCEEEEESHHHHHHHHHHH
T ss_pred CCCCceEEEEC-cchheeEeccCHHHHHhcCCCCCceeech-hhHHHHHHhh------ccccceeeCCChHHHHHHHHHH
Confidence 34467899999 99999999998777888876777765543 1111111111 0125788999999999999997
Q ss_pred hc---CCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCccccc
Q 023557 92 GF---GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDV 168 (280)
Q Consensus 92 ~l---G~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~ 168 (280)
| |.++.|+|.+|+|.+|+.+++.|++.||++.++.....+|++++++++ +|+|+++.+.++...+++++...+.+
T Consensus 101 -Lg~~g~~v~~ig~vG~D~~G~~i~~~L~~~GV~~~~v~~~~~~T~~~~~~~~-~g~r~~~~~~~a~~~l~~~~~~~~~l 178 (383)
T 2abs_A 101 -LLRKPGSAGYMGAIGDDPRGQVLKELCDKEGLATRFMVAPGQSTGVCAVLIN-EKERTLCTHLGACGSFRLPEDWTTFA 178 (383)
T ss_dssp -HHCSTTSEEEEEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCCEEEEEEEE-TTEEEEEEECGGGGGCCCCTTHHHHT
T ss_pred -hccCCCcEEEEEEecCChhHHHHHHHHHHcCCceeeeecCCCCCeEEEEEEc-CCceeEeeccChhhhCChhhhhHHHh
Confidence 8 899999999999999999999999999999988754448999999998 78998877777776666654444568
Q ss_pred CCCcEEEEE-ec-CCCHHHHHHHHHHHHH-CCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCC-
Q 023557 169 KGSKWLVLR-FG-MFNFEVIQAAIRIAKQ-EGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE- 244 (280)
Q Consensus 169 ~~~~~v~i~-~~-~~~~~~~~~~~~~a~~-~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~- 244 (280)
+++++||++ +. ..+.+.+.++++.+++ .++++++|+.+....+.+++.+.++++ .+|++++|++|+..|++...
T Consensus 179 ~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~~g~~v~~d~~~~~~~~~~~~~l~~ll~--~~dil~pN~~Ea~~L~g~~~~ 256 (383)
T 2abs_A 179 SGALIFYATAYTLTATPKNALEVAGYAHGIPNAIFTLNLSAPFCVELYKDAMQSLLL--HTNILFGNEEEFAHLAKVHNL 256 (383)
T ss_dssp TTCCEEEEEGGGGTTCHHHHHHHHHHHHTSTTCEEEEECCCHHHHHHCHHHHHHHHH--TCSEEEEEHHHHHHHHHHHTC
T ss_pred hcCCEEEEeeecccCCHHHHHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHHHHHHh--hCCEEeCCHHHHHHHhcccCc
Confidence 899999998 32 2567888999999998 899999999865433344566677787 89999999999999976421
Q ss_pred -------------CCcHHHHHHHHh-------c-CCCEEEEEcCCCceEEE
Q 023557 245 -------------NADSEAALEFLA-------K-RCQWAVVTLGPNGCIAK 274 (280)
Q Consensus 245 -------------~~~~~~~~~~l~-------~-~~~~vvvT~G~~Ga~~~ 274 (280)
.+++.++++.+. . +++.||||+|++|++++
T Consensus 257 ~~~~~~~~s~~~~~~~~~~~a~~l~~~~~~~~~~g~~~VvvT~G~~Ga~~~ 307 (383)
T 2abs_A 257 VAAEKTALSTANKEHAVEVCTGALRLLTAGQNTSATKLVVMTRGHNPVIAA 307 (383)
T ss_dssp C----------CHHHHHHHHHHHHHHHHTTCCCSSCCEEEEECTTSCEEEE
T ss_pred ccccccccccccccccHHHHHHHHHhccccccccCCCEEEEEcCCCCeEEE
Confidence 123344555443 2 88999999999999998
No 10
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Probab=100.00 E-value=3.1e-32 Score=237.17 Aligned_cols=226 Identities=22% Similarity=0.311 Sum_probs=183.2
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~ 95 (280)
.+|+++| ++++|+++.+ +++| ..|+.... .+....+||+++|+|+++++ ||.
T Consensus 5 ~~v~viG-~~~iD~~~~~-----~~~p-~~g~~~~~--------------------~~~~~~~GG~~~N~A~~la~-lG~ 56 (309)
T 1rkd_A 5 GSLVVLG-SINADHILNL-----QSFP-TPGETVTG--------------------NHYQVAFGGKGANQAVAAGR-SGA 56 (309)
T ss_dssp CEEEEEC-CCEEEEEEEC-----SSCC-CTTCCCCC--------------------CCEEEEEECHHHHHHHHHHH-HTC
T ss_pred CeEEEEC-cceEeEEEec-----CCCC-CCCCeeec--------------------CceeecCCCHHHHHHHHHHh-CCC
Confidence 4799999 9999999998 6776 33432221 26788999999999999997 999
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcccCcc--cccCCCc
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA--EDVKGSK 172 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~--~~~~~~~ 172 (280)
++.++|.+|+|.+|+.+++.|++.||+++++...++ +|++++++++++|+|+++.+.++...+++++++. +.+++++
T Consensus 57 ~~~~~~~vG~D~~g~~i~~~L~~~gv~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 136 (309)
T 1rkd_A 57 NIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPALVEAQRERIANAS 136 (309)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHTTTEECTTEEEETTCCCEEEEEEECTTSCEEEEEECGGGGGCCHHHHHTTHHHHHHCS
T ss_pred ceEEEEEECCCHHHHHHHHHHHHcCCCccceEecCCCCCceEEEEECCCCCeEEEEeCCchhcCCHHHHHHHHHhcccCC
Confidence 999999999999999999999999999999887544 8999999999889999887777776777766643 3577899
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC--CcHHH
Q 023557 173 WLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN--ADSEA 250 (280)
Q Consensus 173 ~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~--~~~~~ 250 (280)
++|++.. .+.+.+.++++.+++.+.++++|++... .+.. ++++ .+|++++|++|+..+++.... +++.+
T Consensus 137 ~v~~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~---~~~~---~ll~--~~dil~~N~~E~~~l~g~~~~~~~~~~~ 207 (309)
T 1rkd_A 137 ALLMQLE-SPLESVMAAAKIAHQNKTIVALNPAPAR---ELPD---ELLA--LVDIITPNETEAEKLTGIRVENDEDAAK 207 (309)
T ss_dssp EEEECSS-SCHHHHHHHHHHHHHTTCEEEECCCSCC---CCCH---HHHT--TCSEECCCHHHHHHHHSCCCSSHHHHHH
T ss_pred EEEEeCC-CCHHHHHHHHHHHHHcCCEEEEECCccc---cchH---HHHh--hCCEEEcCHHHHHHHhCCCCCCHHHHHH
Confidence 9999854 3678888999999999999999998641 2222 3555 899999999999999986421 23444
Q ss_pred HHHH-HhcCCCEEEEEcCCCceEEEeCCc
Q 023557 251 ALEF-LAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 251 ~~~~-l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+++. ++.+++.++||+|++|++++++++
T Consensus 208 ~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 236 (309)
T 1rkd_A 208 AAQVLHEKGIRTVLITLGSRGVWASVNGE 236 (309)
T ss_dssp HHHHHHHTTCSEEEEECGGGCEEEEETTE
T ss_pred HHHHHHHhCCCEEEEEECCCcEEEEeCCc
Confidence 4544 456889999999999999887654
No 11
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A*
Probab=100.00 E-value=4.9e-32 Score=236.12 Aligned_cols=211 Identities=22% Similarity=0.289 Sum_probs=179.3
Q ss_pred CCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcC
Q 023557 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (280)
Q Consensus 15 ~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG 94 (280)
-.+|+++| ++++|+++.+ +++| ..|+.... .+....+||+++|+|++|++ ||
T Consensus 19 m~~i~viG-~~~iD~~~~v-----~~~p-~~g~~~~~--------------------~~~~~~~GG~~~NvA~~la~-LG 70 (310)
T 3go6_A 19 APRVCVVG-SVNMDLTFVV-----DALP-RPGETVLA--------------------ASLTRTPGGKGANQAVAAAR-AG 70 (310)
T ss_dssp CCEEEEEC-CCEEEEEEEC-----SSCC-CTTCCCCC--------------------SEEEEEEECHHHHHHHHHHH-TT
T ss_pred cCCEEEEC-CceEEEEEec-----CCCC-CCCCeEEe--------------------cceeecCCCHHHHHHHHHHH-CC
Confidence 45799999 9999999998 7777 44443332 26789999999999999997 99
Q ss_pred CcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEE
Q 023557 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174 (280)
Q Consensus 95 ~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v 174 (280)
.++.++|.+|+|.+|+.+++.|++.||+++++...+.+|++++++++++|+|+++.+.++...++ ++ .+.+++++++
T Consensus 71 ~~~~~i~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~~~~~~~~ga~~~l~--~~-~~~l~~~~~v 147 (310)
T 3go6_A 71 AQVQFSGAFGDDPAAAQLRAHLRANAVGLDRTVTVPGPSGTAIIVVDASAENTVLVAPGANAHLT--PV-PSAVANCDVL 147 (310)
T ss_dssp CEEEEECEECSSHHHHHHHHHHHHTTCBCTTCEECSSCCEEEEEEECTTSCEEEEEECGGGGGCC--CC-TTTTTTCSEE
T ss_pred CCeEEEEEECCCHHHHHHHHHHHHcCCccceeEecCCCCCEEEEEEcCCCCEEEEecCChhhhHH--HH-HHHhhcCCEE
Confidence 99999999999999999999999999999998766568999999999889999988877766665 44 4578899999
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHHHHHHH
Q 023557 175 VLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEF 254 (280)
Q Consensus 175 ~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~ 254 (280)
|++.. .+.+.+.++++.+++.|.++++|+++.. ...+.+.++++ .+|++++|++|++.+++.
T Consensus 148 ~~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~---~~~~~~~~ll~--~~dil~~N~~Ea~~l~g~------------ 209 (310)
T 3go6_A 148 LTQLE-IPVATALAAARAAQSADAVVMVNASPAG---QDRSSLQDLAA--IADVVIANEHEANDWPSP------------ 209 (310)
T ss_dssp EECSS-SCHHHHHHHHHHHHHTTCEEEEECCSSS---CCHHHHHHHHH--HCSEEEEEHHHHHHSSSC------------
T ss_pred EECCC-CCHHHHHHHHHHHHHcCCEEEEcCCccc---cchHHHHHHHh--hCCEEEeCHHHHHHHhCC------------
Confidence 99954 4788899999999999999999998652 24555667777 899999999999998762
Q ss_pred HhcCCCEEEEEcCCCceEEEeCCc
Q 023557 255 LAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 255 l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
.+.++||+|++|++++++++
T Consensus 210 ----~~~vvvt~G~~Ga~~~~~~~ 229 (310)
T 3go6_A 210 ----PTHFVITLGVRGARYVGADG 229 (310)
T ss_dssp ----CSEEEEECGGGCEEEEETTE
T ss_pred ----CCEEEEEECCCCEEEEECCc
Confidence 78999999999999998764
No 12
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A*
Probab=100.00 E-value=4.1e-32 Score=239.40 Aligned_cols=229 Identities=21% Similarity=0.206 Sum_probs=183.5
Q ss_pred CCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhc
Q 023557 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (280)
Q Consensus 14 ~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~l 93 (280)
..++|+++| .+++|++... +..|.+ ..+....+||+++|+|++|++ |
T Consensus 3 ~~~~v~viG-~~~iD~~~~~-----~~~~~~--------------------------~~~~~~~~GG~~~NvA~~la~-L 49 (338)
T 3ljs_A 3 LKKTILCFG-EALIDMLAQP-----LVKKGM--------------------------PRAFLQCAGGAPANVAVAVAR-L 49 (338)
T ss_dssp -CCEEEEES-CCEEEEEECC-----CSSTTS--------------------------CCCEEEEEECHHHHHHHHHHH-H
T ss_pred CCCCEEEEC-hhhhheeccC-----CCCccc--------------------------hhceeecCCChHHHHHHHHHh-C
Confidence 457899999 9999999988 444411 026889999999999999997 9
Q ss_pred CCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecC--CcCCCCCcccCcccccCC
Q 023557 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCL--SNAVKIQADELIAEDVKG 170 (280)
Q Consensus 94 G~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~l~~~~~~~ 170 (280)
|.++.++|.+|+|.+|+.+++.|++.||+++++.+.++ +|+++++.++++|+|++..+. ++...+++++++.+.+++
T Consensus 50 G~~~~~ig~vG~D~~g~~l~~~l~~~gV~~~~v~~~~~~~T~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~~~~~~~~~~ 129 (338)
T 3ljs_A 50 GGAVQFVGMLGSDMFGDFLFDSFAEAGVVTDGIVRTSTAKTALAFVALDAHGERSFSFYRPPAADLLFRVEHFQDASFSD 129 (338)
T ss_dssp TCCEEEESEEESSHHHHHHHHHHHHHTCBCTTCEEESSSCCCEEEEECCSTTCCEEEEECSSCGGGGCCGGGCCHHHHHT
T ss_pred CCCEEEEeeccCCHHHHHHHHHHHHcCCCceeEEEcCCCCceEEEEEECCCCCeEEEEeCCCChhHhCCHhhcCHhHhcC
Confidence 99999999999999999999999999999999887544 899999999988999876554 555668888887777889
Q ss_pred CcEEEEE-ecCC---CHHHHHHHHHHHHHCCCeEEEECCChHHH----hhhhhHHHhhccCCCceEEEcCHHHHHHHhcC
Q 023557 171 SKWLVLR-FGMF---NFEVIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLESGDVDLCFANEDEAAELVRG 242 (280)
Q Consensus 171 ~~~v~i~-~~~~---~~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~ 242 (280)
++++|++ +.+. +.+.+.++++.+++.|.++++|++..... ..+++.+.++++ .+|++++|++|+..|++.
T Consensus 130 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~--~~dil~~N~~E~~~l~g~ 207 (338)
T 3ljs_A 130 ALIFHACSNSMTDADIAEVTFEGMRRAQAAGAIVSFDLNFRPMLWPNGENPASRLWKGLS--LADVVKLSSEELDYLANT 207 (338)
T ss_dssp EEEEEEEGGGGSSHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGSCTTCCTHHHHHHHHH--TCSEEEEEHHHHHHHHHH
T ss_pred CCEEEECChHhcCchHHHHHHHHHHHHHHcCCEEEEECCCChhhcCCHHHHHHHHHHHHh--hCCEEEecHHHHHHHhCC
Confidence 9999999 3322 35778899999999999999999643210 123455667777 899999999999999875
Q ss_pred CCCCcHHHHHHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 243 EENADSEAALEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 243 ~~~~~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
.... .+++++.+ +.+++.++||+|++|++++++++
T Consensus 208 ~~~~-~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~ 243 (338)
T 3ljs_A 208 LAAD-ANAVIQQLWQGRAQLLLVTDAAGPVHWYTRTA 243 (338)
T ss_dssp HTSC-HHHHHHHHTTTTCCEEEEEETTEEEEEEESSC
T ss_pred CChh-HHHHHHHHHhcCCCEEEEeeCCCceEEEECCc
Confidence 3211 12255544 55889999999999999998765
No 13
>3ikh_A Carbohydrate kinase; transferase,kinase,SAD,ribose,D-ribose metabolic process,ATP ribokinase, PFKB family,11206L1,PSI-II,nysgxrc; HET: ATP; 1.88A {Klebsiella pneumoniae subsp} PDB: 3i3y_A*
Probab=100.00 E-value=1.4e-32 Score=238.39 Aligned_cols=211 Identities=20% Similarity=0.252 Sum_probs=179.2
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~ 95 (280)
++|+++| ++++|+++.+ +++| ..|...... +....+||+++|+|+++++ ||.
T Consensus 3 ~~i~viG-~~~iD~~~~~-----~~~p-~~g~~~~~~--------------------~~~~~~GG~~~NvA~~la~-lG~ 54 (299)
T 3ikh_A 3 LRVYVTG-NITVDETWSI-----PDIP-KKGASIHGV--------------------KVSQDIGGKGANQAIILSR-CGI 54 (299)
T ss_dssp CCEEEEC-CCEEEEEEEC-----SSCC-CTTCEEECE--------------------EEEEEEECHHHHHHHHHHH-TTC
T ss_pred ceEEEEC-ceEEEEEEec-----CCCC-CCCCeEEee--------------------eeeeccCCHHHHHHHHHHH-CCC
Confidence 5799999 9999999999 7787 445444322 5789999999999999997 999
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCc--ccccCCCcE
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELI--AEDVKGSKW 173 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~--~~~~~~~~~ 173 (280)
++.++|.+|+|.+|+.+++.|++.||+++++...+.+|++++++++++|+|+++.+.++...+++++++ .+.++++++
T Consensus 55 ~~~~i~~vG~D~~g~~i~~~l~~~gv~~~~v~~~~~~T~~~~~~~~~~g~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 134 (299)
T 3ikh_A 55 ETRLIAATGNDSNGAWIRQQIKNEPLMLLPDGHFNQHSDTSIILNSADGDNAIITTTAAADTFSLDEMIPHMADAVAGDI 134 (299)
T ss_dssp CEEEECCCCSSHHHHHHHHHGGGSSCEEESSSCCSSCCEEEEEECSSSCSCEEEEECHHHHHCCHHHHGGGGTTCCTTCE
T ss_pred CeEEEEEECCCHHHHHHHHHHHHcCCceeeeEecCCCCcEEEEEEcCCCCeEEEEeCCccccCCHHHHHHHHhhhccCCE
Confidence 999999999999999999999999999998865444899999999988999988887776677777665 346789999
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHHHHHH
Q 023557 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALE 253 (280)
Q Consensus 174 v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~~~~~ 253 (280)
+|++.. .+.+.+.++++.+++.|.++++|+++. .+.+.++++ .+|++++|++|++.+++
T Consensus 135 v~~~g~-~~~~~~~~~~~~a~~~g~~v~~D~~~~------~~~~~~ll~--~~dil~~N~~E~~~l~g------------ 193 (299)
T 3ikh_A 135 LLQQGN-FSLDKTRALFQYARSRGMTTVFNPSPV------NPDFCHLWP--LIDIAVVNESEAELLQP------------ 193 (299)
T ss_dssp EEECSC-SCHHHHHHHHHHHHHTTCEEEECCCSC------CGGGGGCGG--GCSEEEEEHHHHHHHCC------------
T ss_pred EEECCC-CCHHHHHHHHHHHHHcCCEEEEccccc------hhhHHHHHh--hCCEEEecHHHHHHHhc------------
Confidence 999954 378889999999999999999999864 233445666 89999999999998875
Q ss_pred HHhcCCCEEEEEcCCCceEEEeCCc
Q 023557 254 FLAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 254 ~l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
.+++.++||+|++|++++++++
T Consensus 194 ---~g~~~vvvt~G~~G~~~~~~~~ 215 (299)
T 3ikh_A 194 ---YGVKTLVITQGAAGAWLVQEGQ 215 (299)
T ss_dssp ---CSCSEEEEECGGGCEEEECSSC
T ss_pred ---CCCCEEEEEECCCceEEEeCCc
Confidence 5789999999999999998764
No 14
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1
Probab=100.00 E-value=8.6e-32 Score=236.69 Aligned_cols=227 Identities=19% Similarity=0.296 Sum_probs=182.5
Q ss_pred CCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcC
Q 023557 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (280)
Q Consensus 15 ~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG 94 (280)
.++|+++| ++++|+++.+ +++| ..|+.... .+....+||+++|+|++|++ ||
T Consensus 24 ~~~vlviG-~~~iD~~~~~-----~~~p-~~g~~~~~--------------------~~~~~~~GG~~~NvA~~la~-LG 75 (331)
T 2fv7_A 24 VAAVVVVG-SCMTDLVSLT-----SRLP-KTGETIHG--------------------HKFFIGFGGKGANQCVQAAR-LG 75 (331)
T ss_dssp CCSEEEEC-CCEEEEEEEC-----SSCC-CTTCCCCC--------------------SEEEEEEECHHHHHHHHHHH-TT
T ss_pred cCCEEEEC-cccEEEEEec-----CCCC-CCCceEec--------------------CceEECcCCHHHHHHHHHHH-CC
Confidence 35799999 9999999998 6776 34432221 25778999999999999997 99
Q ss_pred CcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcccCcc--cccCCC
Q 023557 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA--EDVKGS 171 (280)
Q Consensus 95 ~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~--~~~~~~ 171 (280)
.++.++|.+|+|.+|+.+++.|++.||+++++...++ +|++++++++++|+|+++.+.++...+++++++. +.++++
T Consensus 76 ~~~~~i~~vG~D~~G~~l~~~L~~~Gv~~~~v~~~~~~~T~~~~v~~~~~g~~~~~~~~ga~~~l~~~~~~~~~~~l~~~ 155 (331)
T 2fv7_A 76 AMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAGANLLLNTEDLRAAANVISRA 155 (331)
T ss_dssp CCEEEEEEEESSHHHHHHHHHHHTTTEECTTEEEESSSCCEEEEEEECTTSCEEEEEECGGGGGCCHHHHHHTHHHHHHC
T ss_pred CCeEEEEEECCChhHHHHHHHHHHcCCcceeeEecCCCCCceEEEEECCCCCeEEEecCCccccCCHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999887544 8999999999889999888877766777766643 346789
Q ss_pred cEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC--CcHH
Q 023557 172 KWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN--ADSE 249 (280)
Q Consensus 172 ~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~--~~~~ 249 (280)
+++++++. .+.+.+..+++.+++.++++++|++... ..+.+ ++++ .+|++++|++|+..+++.... +++.
T Consensus 156 ~~v~~~~~-~~~~~~~~~~~~a~~~g~~v~~Dp~~~~--~~~~~---~ll~--~~dil~~N~~Ea~~l~g~~~~~~~~~~ 227 (331)
T 2fv7_A 156 KVMVCQLE-ITPATSLEALTMARRSGVKTLFNPAPAI--ADLDP---QFYT--LSDVFCCNESEAEILTGLTVGSAADAG 227 (331)
T ss_dssp SEEEECSS-SCHHHHHHHHHHHHHTTCEEEECCCSCC--TTCCT---HHHH--TCSEEEEEHHHHHHHHSSCCCSHHHHH
T ss_pred CEEEEecC-CCHHHHHHHHHHHHHcCCEEEEeCCccc--ccchH---HHHh--cCCEEEeCHHHHHHHhCCCCCChhHHH
Confidence 99999854 3678888999999999999999998641 12223 3444 899999999999999986421 2344
Q ss_pred HHHHHH-hcCCCEEEEEcCCCceEEEeCC
Q 023557 250 AALEFL-AKRCQWAVVTLGPNGCIAKHGK 277 (280)
Q Consensus 250 ~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~ 277 (280)
++++.+ +.+++.++||+|++|+++++++
T Consensus 228 ~~~~~l~~~g~~~VvvT~G~~G~~~~~~~ 256 (331)
T 2fv7_A 228 EAALVLLKRGCQVVIITLGAEGCVVLSQT 256 (331)
T ss_dssp HHHHHHHTTTCSEEEEECGGGCEEEEESS
T ss_pred HHHHHHHHcCCCEEEEEECCCceEEEECC
Confidence 455544 5688999999999999998765
No 15
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A*
Probab=99.98 E-value=6.3e-31 Score=230.59 Aligned_cols=228 Identities=21% Similarity=0.235 Sum_probs=177.9
Q ss_pred CCeEEEecCCeeEeEEeecChhHH---HhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHh
Q 023557 15 AALILGLQPAALIDHVARVDWSLL---DQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSV 91 (280)
Q Consensus 15 ~~~i~~iG~~~~vD~~~~~~~~~l---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~ 91 (280)
.++|+++| .+++|++.......+ +.+|. .+....+||+++|+|+++++
T Consensus 5 ~~~v~~iG-~~~~D~~~~~~~~~~~~~~~~p~----------------------------~~~~~~~GG~~~NvA~~la~ 55 (325)
T 3h49_A 5 NLDVICIG-AAIVDIPLQPVSKNIFDVDSYPL----------------------------ERIAMTTGGDAINEATIISR 55 (325)
T ss_dssp CEEEEEES-CCEEEEEECSCCGGGGGSSCCCC----------------------------SCCCCEEESHHHHHHHHHHH
T ss_pred CCeEEEEC-hhhheeeccCCCCccccccccch----------------------------heeEEccCcHHHHHHHHHHH
Confidence 46899999 999999866422211 22220 15678899999999999997
Q ss_pred hcCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCc-CCCCCcccCcccccC
Q 023557 92 GFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSN-AVKIQADELIAEDVK 169 (280)
Q Consensus 92 ~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~-~~~~~~~~l~~~~~~ 169 (280)
||.++.++|.+|+|.+|+++++.|++.||+++++...++ +|++++++++++|+|+++.+.+. ...+++++++.+.++
T Consensus 56 -LG~~~~~ig~vG~D~~G~~i~~~L~~~gV~~~~v~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 134 (325)
T 3h49_A 56 -LGHRTALMSRIGKDAAGQFILDHCRKENIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWKLNIDDVDFARFS 134 (325)
T ss_dssp -TTCEEEEECEEESSHHHHHHHHHHHHHTCBCSSCEEETTSCCCEEEEEECTTSCEEEECCTTSHHHHCCGGGCCGGGGG
T ss_pred -CCCCeEEEEEECCChHHHHHHHHHHHcCCceeeEEecCCCCCceEEEEECCCCceeEEeccCcccccCChhhcChhhhc
Confidence 999999999999999999999999999999999887654 89999999998999998876543 345677777777789
Q ss_pred CCcEEEEEe-cC---CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC
Q 023557 170 GSKWLVLRF-GM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN 245 (280)
Q Consensus 170 ~~~~v~i~~-~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~ 245 (280)
+++++|++. .. .+.+.+.++++.+++.+. +++|+..........+.+.++++ .+|++++|++|+..+++.
T Consensus 135 ~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~-~~~d~~~~~~~~~~~~~~~~~l~--~~dil~~N~~E~~~l~g~--- 208 (325)
T 3h49_A 135 QAKLLSLASIFNSPLLDGKALTEIFTQAKARQM-IICADMIKPRLNETLDDICEALS--YVDYLFPNFAEAKLLTGK--- 208 (325)
T ss_dssp GCSEEEEEEETTSTTSCHHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHHHHT--TCSEEECBHHHHHHHHTC---
T ss_pred cCCEEEEecccCCcccCHHHHHHHHHHHHhcCC-EEEecCCchhhhhHHHHHHHHHh--hCCEEecCHHHHHHHhCC---
Confidence 999999993 21 245788899999999885 55664221101122345667777 899999999999999986
Q ss_pred CcHHHHHHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 246 ADSEAALEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 246 ~~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
.+.+++++.+ +.+++.++||+|++|++++++++
T Consensus 209 ~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 242 (325)
T 3h49_A 209 ETLDEIADCFLACGVKTVVIKTGKDGCFIKRGDM 242 (325)
T ss_dssp SSHHHHHHHHHTTTCSEEEEECTTSCEEEEETTE
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCCeEEEECCe
Confidence 3566766655 45889999999999999998764
No 16
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A
Probab=99.98 E-value=1.4e-31 Score=232.35 Aligned_cols=220 Identities=18% Similarity=0.221 Sum_probs=176.4
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| ++++|+++.+ +++| ..|..... .+....+||+++|+|+++++ ||.+
T Consensus 7 ~i~viG-~~~iD~~~~~-----~~~p-~~~~~~~~--------------------~~~~~~~GG~~~N~A~~la~-LG~~ 58 (302)
T 2c4e_A 7 KITCVG-HTALDYIFNV-----EKFP-EPNTSIQI--------------------PSARKYYGGAAANTAVGIKK-LGVN 58 (302)
T ss_dssp EEEEES-CCEEEEEEEC-----SSCC-CTTCCCCC--------------------SCEEEEEECHHHHHHHHHHH-TTCE
T ss_pred cEEEEC-ceeEEEEecc-----cccC-CCCceeee--------------------cceeecCCCHHHHHHHHHHH-CCCc
Confidence 699999 9999999998 6676 33332221 25788999999999999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 175 (280)
+.++|.+|+|.+|+.+++.|++.||+++++...++ +|++++++++++|+|+++.+.++...+++++++. +++++||
T Consensus 59 ~~~i~~vG~D~~g~~i~~~l~~~gv~~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~v~ 135 (302)
T 2c4e_A 59 SELLSCVGYDFKNSGYERYLKNLDINISKLYYSEEEETPKAWIFTDKDNNQITFFLWGAAKHYKELNPPN---FNTEIVH 135 (302)
T ss_dssp EEEECEECTTTTTSHHHHHHHHTTCBCTTCEECSSSCCCEEEEEECSSCCEECCEECGGGGGGGGCCCCC---CCEEEEE
T ss_pred eEEEEEEeCCCchHHHHHHHHHcCCcccceEeeCCCCCceEEEEECCCCCEEEEEeCChhhhCCHhhcCc---ccCCEEE
Confidence 99999999999999999999999999998876555 7999999998889999887777766667666644 6899999
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHHHHHHHH
Q 023557 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAALEFL 255 (280)
Q Consensus 176 i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~~~~~~l 255 (280)
++.. .++.+.++++.+++.+ ++++|++.... ....+.+.++++ .+|++++|++|+..+++.... +. . +++
T Consensus 136 ~~~~--~~~~~~~~~~~a~~~g-~v~~D~~~~~~-~~~~~~~~~~l~--~~dil~~N~~E~~~l~g~~~~-~~--~-~l~ 205 (302)
T 2c4e_A 136 IATG--DPEFNLKCAKKAYGNN-LVSFDPGQDLP-QYSKEMLLEIIE--HTNFLFMNKHEFERASNLLNF-EI--D-DYL 205 (302)
T ss_dssp ECSS--CHHHHHHHHHHHBTTB-EEEECCGGGGG-GCCHHHHHHHHH--TCSEEEEEHHHHHHHHHHHTC-CH--H-HHH
T ss_pred EeCC--CcHHHHHHHHHHHhcC-CEEEeCchhhh-hhhHHHHHHHHh--cCCEEEcCHHHHHHHhCCCCc-cH--H-HHH
Confidence 9853 3478889999999999 99999985311 011345666777 899999999999999874321 11 1 455
Q ss_pred hcCCCEEEEEcCCCceEEEeCCc
Q 023557 256 AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 256 ~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+. ++.++||+|++|++++++++
T Consensus 206 ~~-~~~vvvt~G~~G~~~~~~~~ 227 (302)
T 2c4e_A 206 ER-VDALIVTKGSKGSVIYTKDK 227 (302)
T ss_dssp TT-CSEEEEECGGGCEEEECSSC
T ss_pred hc-CCEEEEEECCCceEEEeCCc
Confidence 56 89999999999999987654
No 17
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens}
Probab=99.98 E-value=1.8e-31 Score=234.30 Aligned_cols=228 Identities=17% Similarity=0.215 Sum_probs=181.6
Q ss_pred CCCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhh
Q 023557 13 SQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (280)
Q Consensus 13 ~~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~ 92 (280)
.+.++|+++| ++++|+++.+ +.+| ..|++... +....+||+++|+|++|++
T Consensus 4 ~~~~~v~viG-~~~vD~~~~~-----~~~~-~~g~~~~~---------------------~~~~~~GG~~~NvA~~la~- 54 (328)
T 3kzh_A 4 RKEPYLLVFG-ASVVDVFGFS-----KASY-RPYNSTPG---------------------HVKISFGGVCRNIAENMAR- 54 (328)
T ss_dssp CCCCCEEEEC-CCEEEEEEEE-----SSCC-CTTSEEEE---------------------EEEEEEECHHHHHHHHHHH-
T ss_pred CCCCcEEEEC-cEEeeeeecc-----CCCC-CCCCCceE---------------------EEEEccCcHHHHHHHHHHH-
Confidence 4567899999 9999999999 6666 34443331 3778999999999999997
Q ss_pred cCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeee-ecCCcCCCCCcccCc--cccc
Q 023557 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMR-PCLSNAVKIQADELI--AEDV 168 (280)
Q Consensus 93 lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~-~~~~~~~~~~~~~l~--~~~~ 168 (280)
||.++.++|.+|+|.+|+.+++.|++.||+++++...++ +|+.++++++++|+|++. ...+....++++.+. .+.+
T Consensus 55 LG~~v~~i~~vG~D~~g~~i~~~L~~~gv~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (328)
T 3kzh_A 55 VGVNTNFMSILGNDEHGKSIVEHSKKIGYHMDDSMVIEGGSTPTYLAILDENGEMVSAIADMKSIGAMNTDFIDSKREIF 134 (328)
T ss_dssp TTCCEEEECEECSSHHHHHHHHHHHHHTEECTTCEECTTCCCCEEEEEECTTSCEEEEEEECGGGGGCCHHHHHHTHHHH
T ss_pred cCCCcEEEEEecCcHHHHHHHHHHHHcCCCccceEEeCCCCCeeEEEEEcCCCCEEEEEEchhhhhhCCHHHHHHHHHhh
Confidence 999999999999999999999999999999998876555 799999999988999874 345555556665554 2567
Q ss_pred CCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC--C
Q 023557 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN--A 246 (280)
Q Consensus 169 ~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~--~ 246 (280)
..+++++++.. .+ +.+..+++ +++.++++++|+++.. ..+.+.++++ .+|++++|++|+..+++.... +
T Consensus 135 ~~~~~~~~~~~-~~-~~~~~l~~-a~~~~~~v~~D~~~~~----~~~~~~~~l~--~~dil~~N~~E~~~l~g~~~~~~~ 205 (328)
T 3kzh_A 135 ENAEYTVLDSD-NP-EIMEYLLK-NFKDKTNFILDPVSAE----KASWVKHLIK--DFHTIKPNRHEAEILAGFPITDTD 205 (328)
T ss_dssp HTCSEEEEESS-CH-HHHHHHHH-HHTTTSEEEEECCSHH----HHHTSTTTGG--GCSEECCBHHHHHHHHTSCCCSHH
T ss_pred ccCCEEEEeCC-cH-HHHHHHHH-HhhcCCcEEEEeCCHH----HHHHHHHHhc--CCcEEeCCHHHHHHHHCCCCCCHH
Confidence 89999999954 24 66667776 7888999999998753 2334556676 899999999999999986432 2
Q ss_pred cHHHHHHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 247 DSEAALEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 247 ~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++.++++.+ +.+++.++||+|++|++++++++
T Consensus 206 ~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 238 (328)
T 3kzh_A 206 DLIKASNYFLGLGIKKVFISLDADGIFYNDGVS 238 (328)
T ss_dssp HHHHHHHHHHHHTCCEEEEECGGGCEEEECSSC
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCCEEEEeCCc
Confidence 344555544 55899999999999999988764
No 18
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP}
Probab=99.98 E-value=8e-31 Score=230.95 Aligned_cols=228 Identities=18% Similarity=0.193 Sum_probs=179.9
Q ss_pred CCCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhh
Q 023557 13 SQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (280)
Q Consensus 13 ~~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~ 92 (280)
++.++|+++| .+++|++.... |.... ..+....+||+++|+|++|++
T Consensus 24 ~~~~~vlviG-~~~iD~~~~~~-----------g~~~~--------------------~~~~~~~~GG~~~NvA~~la~- 70 (336)
T 4du5_A 24 TSALDVITFG-EAMMLLVADRP-----------GPLEH--------------------AEAFHKRTAGAETNVAIGLAR- 70 (336)
T ss_dssp --CEEEEEEC-CCEEEEEESSS-----------SCGGG--------------------CCEEEEEEECHHHHHHHHHHH-
T ss_pred CCCCCEEEEC-hhhhhccCCCC-----------Cccch--------------------hhheeecCCCHHHHHHHHHHh-
Confidence 4457899999 99999987651 21111 126788999999999999997
Q ss_pred cCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeee-e--cCCcCCCCCcccCccccc
Q 023557 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMR-P--CLSNAVKIQADELIAEDV 168 (280)
Q Consensus 93 lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~-~--~~~~~~~~~~~~l~~~~~ 168 (280)
||.++.++|.+|+|.+|+.+++.|++.||+++++.+.++ +|+.+++.++++|+++.+ . ..++...+++++++.+.+
T Consensus 71 LG~~~~~ig~vG~D~~G~~i~~~L~~~GV~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~a~~~l~~~~~~~~~l 150 (336)
T 4du5_A 71 LGLKVGWASRLGTDSMGRYLLAAMAAEGIDCSHVVCDATQKTGFQFKGKVTDGSDPPVEYHRKGSAASHMGVADIDEAWL 150 (336)
T ss_dssp TTCCEEEEEEECSSHHHHHHHHHHHTTTCEEEEEEECTTSCCCEEEECCCSCC--CCEEEECTTCTGGGCCGGGCCHHHH
T ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHcCCCcceEEEcCCCCcEEEEEEEcCCCCcceEEEECCCChhHhCChhhCCHhHh
Confidence 999999999999999999999999999999999987665 899999998888855533 2 246667788888887788
Q ss_pred CCCcEEEEE-ecC-C---CHHHHHHHHHHHHHCCCeEEEECCChHH----HhhhhhHHHhhccCCCceEEEcCHHHHHHH
Q 023557 169 KGSKWLVLR-FGM-F---NFEVIQAAIRIAKQEGLSVSMDLASFEM----VRNFRTPLLQLLESGDVDLCFANEDEAAEL 239 (280)
Q Consensus 169 ~~~~~v~i~-~~~-~---~~~~~~~~~~~a~~~g~~v~~D~~~~~~----~~~~~~~l~~~l~~~~~dil~~N~~E~~~l 239 (280)
++++++|++ +.. . ..+.+.++++.+++.++++++|++.... ...+++.+.++++ .+|++++|++|++.+
T Consensus 151 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~--~~dil~pN~~Ea~~l 228 (336)
T 4du5_A 151 LSARHLHATGVFPAISATTLPAARKTMDLMRAAGRSVSFDPNLRPTLWATPELMRDAINDLAT--RADWVLPGMEEGRFL 228 (336)
T ss_dssp TTEEEEEEESSGGGSCTTHHHHHHHHHHHHHHTTCEEEEECCCCGGGSSSHHHHHHHHHHHHT--TCSEECCBHHHHHHH
T ss_pred ccCCEEEEcCchhhCChHHHHHHHHHHHHHHHCCCEEEEeCcCCchhcCChHHHHHHHHHHHH--hCCEEECCHHHHHHH
Confidence 999999998 321 1 2467788999999999999999973210 1123445667777 899999999999999
Q ss_pred hcCCCCCcHHHHHHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 240 VRGEENADSEAALEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 240 ~~~~~~~~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++. ++++++++.+ +.+++.++||+|++|++++++++
T Consensus 229 ~g~---~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 265 (336)
T 4du5_A 229 TGE---TTPEGVARFYRQLGAKLVVVKLGAEGAYFDGEAG 265 (336)
T ss_dssp HCC---CSHHHHHHHHHHTTCSEEEEECGGGCEEEEETTE
T ss_pred hCC---CCHHHHHHHHHhcCCCEEEEEecCCceEEEECCe
Confidence 985 4666766654 56899999999999999997765
No 19
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A {Halothermothrix orenii}
Probab=99.98 E-value=8.7e-32 Score=236.26 Aligned_cols=228 Identities=19% Similarity=0.231 Sum_probs=179.6
Q ss_pred CCCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhh
Q 023557 13 SQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (280)
Q Consensus 13 ~~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~ 92 (280)
...++|+++| ++++|++... +++|... ..+....+||+++|+|+++++
T Consensus 19 ~~~~~v~viG-~~~~D~~~~~-----~~~p~~~-------------------------~~~~~~~~GG~~~NvA~~la~- 66 (327)
T 3hj6_A 19 KGDLDVVSLG-EILVDMISTE-----EVNSLSQ-------------------------SREYTRHFGGSPANIAVNLSR- 66 (327)
T ss_dssp ---CCEEEES-CCEEEEECCC-----CCSSGGG-------------------------CCEEEEEEECHHHHHHHHHHH-
T ss_pred cCCCCEEEEc-cceEEEeccC-----CCCCccc-------------------------cceeeeecCcHHHHHHHHHHH-
Confidence 3457899999 9999999988 4454211 125788999999999999997
Q ss_pred cCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCC
Q 023557 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGS 171 (280)
Q Consensus 93 lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (280)
||.++.++|.+|+|.+|+.+++.|++.||+++++.+.++ +|+++++..+ +|+|+++.+.++...++++++..+.++++
T Consensus 67 LG~~~~~ig~vG~D~~g~~i~~~l~~~gv~~~~v~~~~~~~t~~~~v~~~-~g~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (327)
T 3hj6_A 67 LGKKVALISRLGADAFGNYLLDVLKGEQIITDGIQQDKERRTTIVYVSKS-TRTPDWLPYREADMYLQEDDIIFELIKRS 145 (327)
T ss_dssp TTCCEEEECEEESSHHHHHHHHHHHHTTCBCTTCEEESSSCCCEEEECCC-TTCCCEEEECSGGGGCCSCCCHHHHHC--
T ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHcCCCcccEEEcCCCCceEEEEEec-CCCccEEEecChhhhCChhhcCHhHhccC
Confidence 999999999999999999999999999999999986544 7888877766 68888887778777777777766778999
Q ss_pred cEEEEE-ecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHH----hhhhhHHHhhccCCCceEEEcCHHHHHHHhcCC
Q 023557 172 KWLVLR-FGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLESGDVDLCFANEDEAAELVRGE 243 (280)
Q Consensus 172 ~~v~i~-~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~ 243 (280)
+++|++ +.+ .+.+.+.++++.+++.|+++++|++..... ....+.+.++++ .+|++++|++|+..+++..
T Consensus 146 ~~v~~~g~~l~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dil~~N~~E~~~l~g~~ 223 (327)
T 3hj6_A 146 KVFHLSTFILSRKPARDTAIKAFNYAREQGKIVCFDPCYRKVLWPEGDDGAGVVEEIIS--RADFVKPSLDDARHLFGPD 223 (327)
T ss_dssp CEEEEESHHHHSHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGSCSSSCSHHHHHHHHT--TCSEECCBHHHHHHHHTTS
T ss_pred CEEEECchHhcCchhHHHHHHHHHHHHHCCCEEEEECCCchhhcCCHHHHHHHHHHHHh--hCCEEecCHHHHHHHhCCC
Confidence 999999 321 245778899999999999999999854211 112345667777 8999999999999999863
Q ss_pred CCCcHHHHHHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 244 ENADSEAALEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 244 ~~~~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+.+++++.+ +.+++.++||+|++|++++++++
T Consensus 224 ---~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 256 (327)
T 3hj6_A 224 ---SPENYVKRYLELGVKAVILTLGEEGVIASDGEE 256 (327)
T ss_dssp ---CSSGGGGGGTTTTCSEEEEECSTTCEEEECSSC
T ss_pred ---CHHHHHHHHHhCCCCEEEEEECCCceEEEeCCe
Confidence 344444444 45889999999999999998765
No 20
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
Probab=99.97 E-value=6.4e-31 Score=229.19 Aligned_cols=220 Identities=22% Similarity=0.270 Sum_probs=176.0
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~ 95 (280)
.+|+++| ++++|+++.+ +++| ..|+.... .+....+||+++|+|+++++ ||.
T Consensus 15 ~~v~vvG-~~~iD~~~~~-----~~~p-~~g~~~~~--------------------~~~~~~~GG~~~NvA~~la~-LG~ 66 (311)
T 1vm7_A 15 LVISVVG-SSNIDIVLKV-----DHFT-KPGETQKA--------------------IEMNVFPGGKGANQAVTVAK-IGE 66 (311)
T ss_dssp CCEEEEC-CCEEEEEEEC-----SSCC-CTTCEEEC--------------------SEEEEEEECHHHHHHHHHHH-HHS
T ss_pred CCEEEEC-cceeeEEEec-----ccCC-CCCceEec--------------------CeeeecCCCHHHHHHHHHHH-cCC
Confidence 5799999 9999999999 7787 34543332 25788999999999999997 999
Q ss_pred c-EEEEEeecCChhHHHHHHHHHhCCCccceeeeCC-CCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcE
Q 023557 96 P-CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKW 173 (280)
Q Consensus 96 ~-~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~-~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (280)
+ +.++|.+|+|.+|+.+++.|++.|| ++...+ .+|++++++++++|+|+++.+.++...+++++++.+.++++++
T Consensus 67 ~~~~~i~~vG~D~~G~~l~~~L~~~gV---~v~~~~~~~T~~~~~~~~~~g~~~~~~~~ga~~~l~~~~~~~~~~~~~~~ 143 (311)
T 1vm7_A 67 KGCRFVTCIGNDDYSDLLIENYEKLGI---TGYIRVSLPTGRAFIEVDKTGQNRIIIFPGANAELKKELIDWNTLSESDI 143 (311)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHTTE---EEEEECSSCCCEEEEEECTTSCEEEEEECGGGGGCCGGGCCHHHHTTCSE
T ss_pred CceEEEEEECCChHHHHHHHHHHHCCC---EEEEcCCCCCeEEEEEECCCCCEEEEEecCccccCCHHHhChhhcccCCE
Confidence 9 9999999999999999999999999 566543 4899999999988999998887877778887776667889999
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCC--CCCcHHHH
Q 023557 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGE--ENADSEAA 251 (280)
Q Consensus 174 v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~--~~~~~~~~ 251 (280)
+|++.. .+.+.+.++ +++.+.++++|++.. .+.+.++++ .+|++++|++|+..+++.. ..+++.++
T Consensus 144 v~~~~~-~~~~~~~~~---a~~~~~~v~~Dp~~~------~~~~~~ll~--~~dil~~N~~E~~~l~g~~~~~~~~~~~~ 211 (311)
T 1vm7_A 144 LLLQNE-IPFETTLEC---AKRFNGIVIFDPAPA------QGINEEIFQ--YLDYLTPNEKEIEALSKDFFGEFLTVEKA 211 (311)
T ss_dssp EEECSS-SCHHHHHHH---HHHCCSEEEECCCSC------TTCCGGGGG--GCSEECCBHHHHHHHHHHHHSCCCCHHHH
T ss_pred EEEeCC-CCHHHHHHH---HHHcCCEEEEeCcch------hhhhHHHHh--hCCEEeCCHHHHHHHhCCCCCChhHHHHH
Confidence 999854 255544433 778899999999863 112234566 8999999999999998742 12456666
Q ss_pred HHH-HhcCCCEEEEEcCCCceEEEeCCc
Q 023557 252 LEF-LAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 252 ~~~-l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++. ++.+++.++||+|++|++++++++
T Consensus 212 ~~~l~~~g~~~vvvT~G~~G~~~~~~~~ 239 (311)
T 1vm7_A 212 AEKFLELGVKNVIVKLGDKGVLLVNKNE 239 (311)
T ss_dssp HHHHHHTTCSEEEEECGGGCEEEEETTE
T ss_pred HHHHHHcCCCEEEEEECCCCeEEEeCCc
Confidence 654 456899999999999999887654
No 21
>2hlz_A Ketohexokinase; non-protein kinase, creatine kinase, fructokinase, isoform A, structural genomics, structural genomics consortium, SGC transferase; 1.85A {Homo sapiens} PDB: 2hqq_A 2hw1_A* 3nbv_A* 3nbw_A* 3nc2_A* 3nc9_A* 3nca_A* 3q92_A* 3qa2_A* 3qai_A* 3ro4_A* 3b3l_A
Probab=99.97 E-value=1.8e-30 Score=226.40 Aligned_cols=221 Identities=21% Similarity=0.298 Sum_probs=176.7
Q ss_pred CCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhc
Q 023557 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (280)
Q Consensus 14 ~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~l 93 (280)
+..+|+++| ++++|+++.+ +++| ..|+.... .+....+||+++|+|+++++ |
T Consensus 16 ~~~~i~viG-~~~iD~~~~~-----~~~p-~~~~~~~~--------------------~~~~~~~GG~~~NvA~~la~-L 67 (312)
T 2hlz_A 16 RGSQILCVG-LVVLDVISLV-----DKYP-KEDSEIRC--------------------LSQRWQRGGNASNSCTILSL-L 67 (312)
T ss_dssp -CCEEEEES-CCEEEEEEEE-----SSCC-CTTCEEEC--------------------SEEEEEEESHHHHHHHHHHH-H
T ss_pred CCCcEEEEC-cceEEEeecc-----ccCC-Cccceeec--------------------ccceeccCccHHHHHHHHHH-c
Confidence 456899999 9999999998 6676 33432221 14678899999999999997 9
Q ss_pred CCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCC-CCceeEEEEEc-CCCceeeeecCCcCCCCCcccCcccccCCC
Q 023557 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVD-ASGNRTMRPCLSNAVKIQADELIAEDVKGS 171 (280)
Q Consensus 94 G~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~-~~T~~~~~~~~-~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (280)
|.++.++|.+|+|.+|+.+++.|++.||+++++...+ .+|++++++++ ++|+|+++.+.++...+++++++...++++
T Consensus 68 G~~v~~ig~vG~D~~G~~l~~~L~~~GV~~~~v~~~~~~~T~~~~~~v~~~~g~r~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (312)
T 2hlz_A 68 GAPCAFMGSMAPGHVADFVLDDLRRYSVDLRYTVFQTTGSVPIATVIINEASGSRTILYYDRSLPDVSATDFEKVDLTQF 147 (312)
T ss_dssp TCCEEEEEEECSSHHHHHHHHHHHHTTCBCTTEEECSSCCCCEEEEEEETTTCCEEEEEECCCCCCCCHHHHHTSCGGGE
T ss_pred CCceEEEEEecCchHHHHHHHHHHHcCCCCccceeccCCCCCeEEEEEECCCCceEEEecCCccccCCHHHhhHhhhccC
Confidence 9999999999999999999999999999999888764 47888888776 478999888777777777777665567889
Q ss_pred cEEEEEecCCCHHHHHHHHHHHHHC--------CCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCC
Q 023557 172 KWLVLRFGMFNFEVIQAAIRIAKQE--------GLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGE 243 (280)
Q Consensus 172 ~~v~i~~~~~~~~~~~~~~~~a~~~--------g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~ 243 (280)
++||++.. .++...++++.+++. +.++++|+... ++.+.++++ .+|++++|++|+..+ +.
T Consensus 148 ~~v~~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~~v~~d~~~~------~~~~~~~l~--~~dil~~n~~ea~~l-g~- 215 (312)
T 2hlz_A 148 KWIHIEGR--NASEQVKMLQRIDAHNTRQPPEQKIRVSVEVEKP------REELFQLFG--YGDVVFVSKDVAKHL-GF- 215 (312)
T ss_dssp EEEEEECS--SHHHHHHHHHHHHHHHTTSCGGGCCEEEEEECSC------CGGGGGGGG--SSSEEEECHHHHHHT-TC-
T ss_pred CEEEEecc--CHHHHHHHHHHHHHhcccccCCCCeEEEEEcccc------hHHHHHHHh--cCCEEEEcHHHHHHc-CC-
Confidence 99999943 456677778877766 67899998643 345566777 899999999999876 53
Q ss_pred CCCcHHHHHHHHhc-CC--CEEEEEcCCCceEEEeC
Q 023557 244 ENADSEAALEFLAK-RC--QWAVVTLGPNGCIAKHG 276 (280)
Q Consensus 244 ~~~~~~~~~~~l~~-~~--~~vvvT~G~~Ga~~~~~ 276 (280)
.+.+++++.+.+ .. +.++||+|++|++++++
T Consensus 216 --~~~~~~~~~l~~~~~~g~~vvvt~G~~G~~~~~~ 249 (312)
T 2hlz_A 216 --QSAEEALRGLYGRVRKGAVLVCAWAEEGADALGP 249 (312)
T ss_dssp --CSHHHHHHHHGGGSCTTCEEEEECGGGCEEEECT
T ss_pred --CCHHHHHHHHHHhcCCCCEEEEEecccCeEEEcc
Confidence 466777666543 33 79999999999999874
No 22
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str}
Probab=99.97 E-value=9e-31 Score=228.84 Aligned_cols=225 Identities=22% Similarity=0.225 Sum_probs=175.0
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~ 95 (280)
.+|+++| ++++|++..+ ++.| .+|..... +....+||+++|+|+++++ ||.
T Consensus 4 ~~i~viG-~~~~D~~~~~-----~~~~-~~~~~~~~---------------------~~~~~~GG~~~NvA~~la~-LG~ 54 (317)
T 2nwh_A 4 KKILVLG-GAHIDRRGMI-----ETET-APGASNPG---------------------SWMEEAGGGGFNAARNLSR-LGF 54 (317)
T ss_dssp CEEEEES-CCEEEEEEEE-----SSSC-CTTSCCCE---------------------EEEEEEECHHHHHHHHHHH-TTC
T ss_pred CeEEEEC-chheEEeecc-----CCCC-CCCCCceE---------------------eEEEeCCcHHHHHHHHHHh-cCC
Confidence 3799999 9999999998 5444 33332221 3678899999999999997 999
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecC-CcCCCCCcccCcc----cccCC
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL-SNAVKIQADELIA----EDVKG 170 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~-~~~~~~~~~~l~~----~~~~~ 170 (280)
++.++|.+|+|.+|+.+++.|++.||+++++...+.+|++++++++++|+|++..+. +....++++.+.. +.+..
T Consensus 55 ~~~~i~~vG~D~~G~~l~~~L~~~gV~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (317)
T 2nwh_A 55 EVRIIAPRGGDVTGEVVAEAARQAGVEDTPFTFLDRRTPSYTAILERDGNLVIALADMDLYKLFTPRRLKVRAVREAIIA 134 (317)
T ss_dssp EEEEECEEESSHHHHHHHHHHHHTTCEECCEEETTSCCCEEEEEECTTSCEEEEEEECGGGGGCCHHHHTSHHHHHHHHH
T ss_pred CcEEEEeecCCchHHHHHHHHHHcCCCCCCcccCCCCCceEEEEEcCCCCEEEEEcchHHHhhCCHHHhhhhhhhhHhcc
Confidence 999999999999999999999999999998444444899999999988999875443 4444566655442 45778
Q ss_pred CcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHHH
Q 023557 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEA 250 (280)
Q Consensus 171 ~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~~ 250 (280)
++++|++.. .+.+.+..+++.+++.++++++|+++... .+.+.++++ .+|++++|++|+..+++.. .+++.+
T Consensus 135 ~~~v~~~~~-~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~----~~~~~~ll~--~~dil~~N~~E~~~l~g~~-~~~~~~ 206 (317)
T 2nwh_A 135 SDFLLCDAN-LPEDTLTALGLIARACEKPLAAIAISPAK----AVKLKAALG--DIDILFMNEAEARALTGET-AENVRD 206 (317)
T ss_dssp CSEEEEETT-SCHHHHHHHHHHHHHTTCCEEEECCSHHH----HGGGTTTGG--GCSEEEEEHHHHHHHHC------CTT
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHhcCCeEEEeCCCHHH----HHHHHHHhh--hCeEecCCHHHHHHHhCCC-hhHHHH
Confidence 999999844 36788899999999999999999986421 233445666 8999999999999998852 123334
Q ss_pred HHH-HHhcCCCEEEEEcCCCceEEEeCC
Q 023557 251 ALE-FLAKRCQWAVVTLGPNGCIAKHGK 277 (280)
Q Consensus 251 ~~~-~l~~~~~~vvvT~G~~Ga~~~~~~ 277 (280)
+++ +++.+++.++||+|++|+++++++
T Consensus 207 ~~~~l~~~g~~~vvvt~G~~G~~~~~~~ 234 (317)
T 2nwh_A 207 WPNILRKAGLSGGVVTRGASEVVAFNGT 234 (317)
T ss_dssp HHHHHHHTTCCCEEEEETTTEEEEECSS
T ss_pred HHHHHHHcCCCEEEEEECCCcEEEEcCC
Confidence 444 445689999999999999998765
No 23
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A
Probab=99.97 E-value=2.8e-30 Score=225.97 Aligned_cols=221 Identities=21% Similarity=0.250 Sum_probs=175.4
Q ss_pred eEEEecCCeeEeE-EeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC
Q 023557 17 LILGLQPAALIDH-VARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (280)
Q Consensus 17 ~i~~iG~~~~vD~-~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~ 95 (280)
||+++++|+++|+ ++.+ +++ ..|++..+. +....+||+++|+|+++++ ||.
T Consensus 3 mi~tvt~np~iD~~~~~v-----~~~--~~g~~~~~~--------------------~~~~~~GG~~~NvA~~la~-LG~ 54 (320)
T 3ie7_A 3 LIYTITLNPAIDRLLFIR-----GEL--EKRKTNRVI--------------------KTEFDCGGKGLHVSGVLSK-FGI 54 (320)
T ss_dssp CEEEEESSCEEEEEEEES-----SSC--CTTSCCCCS--------------------EEEEEEESHHHHHHHHHHH-HTC
T ss_pred eEEEEecchHHeeeEEEc-----CCc--cCCCeeEec--------------------eeeecCCchHHHHHHHHHH-cCC
Confidence 6777777999999 9999 555 466555433 6889999999999999997 999
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCc--eeeeecCCcCCCCCcccCcc------cc
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGN--RTMRPCLSNAVKIQADELIA------ED 167 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~--r~~~~~~~~~~~~~~~~l~~------~~ 167 (280)
++.++|.+|+| +|+.+++.|++.||+++++...+++|++++++++ +|+ |+++...++ .+++++++. +.
T Consensus 55 ~~~~i~~vG~d-~g~~i~~~l~~~gv~~~~v~~~~~~t~~~~~~~~-~g~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~ 130 (320)
T 3ie7_A 55 KNEALGIAGSD-NLDKLYAILKEKHINHDFLVEAGTSTRECFVVLS-DDTNGSTMIPEAGF--TVSQTNKDNLLKQIAKK 130 (320)
T ss_dssp CEEEEEEEEST-THHHHHHHHHHTTCCBCCEEETTCCCEEEEEEEE-TTCSCCEEEECCCC--CCCHHHHHHHHHHHHHH
T ss_pred CeEEEEEecCc-hHHHHHHHHHHcCCceEEEEecCCCCceEEEEEE-CCCceeEEEeCCCC--CCCHHHHHHHHHHHHHH
Confidence 99999999998 9999999999999999999444458999999998 788 888766553 466655542 46
Q ss_pred cCCCcEEEEE-ec--CCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCC
Q 023557 168 VKGSKWLVLR-FG--MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE 244 (280)
Q Consensus 168 ~~~~~~v~i~-~~--~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~ 244 (280)
+++++++|++ +. ..+.+.+.++++.+++.|+++++|++.. .+++.+. ..+|++++|++|+..+++...
T Consensus 131 ~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~--------~l~~~l~-~~~dil~~N~~E~~~l~g~~~ 201 (320)
T 3ie7_A 131 VKKEDMVVIAGSPPPHYTLSDFKELLRTVKATGAFLGCDNSGE--------YLNLAVE-MGVDFIKPNEDEVIAILDEKT 201 (320)
T ss_dssp CCTTCEEEEESCCCTTCCHHHHHHHHHHHHHHTCEEEEECCHH--------HHHHHHH-HCCSEECCBTTGGGGGSCTTC
T ss_pred hcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCEEEEECChH--------HHHHHHh-cCCeEEeeCHHHHHHHhCCCc
Confidence 7899999998 32 1356888999999999999999999743 2333332 179999999999999988643
Q ss_pred CCcHHHHHHHHhcCCCEEEEEcCCCceEEEeCCcc
Q 023557 245 NADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKEV 279 (280)
Q Consensus 245 ~~~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~~ 279 (280)
..+.+.+.+++++ .+.++||+|++|++++++++.
T Consensus 202 ~~~~~~~~~~~~~-~~~vvvt~G~~G~~~~~~~~~ 235 (320)
T 3ie7_A 202 NSLEENIRTLAEK-IPYLVVSLGAKGSICAHNGKL 235 (320)
T ss_dssp CCHHHHHHHHTTT-CSEEEEECGGGCEEEEETTEE
T ss_pred CCCHHHHHHHHhh-CCEEEEEcCCCceEEEeCCcE
Confidence 2234455555555 899999999999999987653
No 24
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Probab=99.97 E-value=3.2e-30 Score=226.41 Aligned_cols=220 Identities=16% Similarity=0.190 Sum_probs=176.2
Q ss_pred CCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhc-
Q 023557 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF- 93 (280)
Q Consensus 15 ~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~l- 93 (280)
-++|+++| .+++|++...+ + + ++...+||+++|+|+++++ |
T Consensus 23 m~~i~viG-~~~iD~~~~~~---------~-~--------------------------~~~~~~GG~~~NvA~~la~-Lg 64 (328)
T 4e69_A 23 MMHILSIG-ECMAELAPADL---------P-G--------------------------TYRLGFAGDTFNTAWYLAR-LR 64 (328)
T ss_dssp SCEEEEES-CCEEEEEECSS---------T-T--------------------------EEEEEEECHHHHHHHHHHH-HC
T ss_pred CCcEEEec-CcEEEEecCCC---------C-C--------------------------ceEEecCCHHHHHHHHHHh-cC
Confidence 45899999 99999998620 0 0 4778899999999999997 9
Q ss_pred -CCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCC---CCCcccCccccc
Q 023557 94 -GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAV---KIQADELIAEDV 168 (280)
Q Consensus 94 -G~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~---~~~~~~l~~~~~ 168 (280)
|.++.++|.+|+|.+|+.+++.|++.||+++++.+.++ +|+.+++.++ +|+|+++.+.+... .++..++..+.+
T Consensus 65 ~G~~~~~ig~vG~D~~G~~l~~~L~~~GV~~~~v~~~~~~~T~~~~v~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (328)
T 4e69_A 65 PESRISYFSAIGDDALSQQMRAAMSAAGIDGGGLRVIPGRTVGLYLITLE-QGERSFAYWRGQSAARELAGDADALAAAM 143 (328)
T ss_dssp TTSEEEEECEECSSHHHHHHHHHHHHTTEECTTCEECTTCCCEEEEEEEE-TTEEEEEEECTTCGGGGTTSCHHHHHHHH
T ss_pred CCCcEEEEEeeCCCHHHHHHHHHHHHcCCccceEEEcCCCCCeEEEEEec-CCceEEEEeCCCCHHHhhcCccccchHHh
Confidence 89999999999999999999999999999999887665 7999999999 89999887666432 233333334678
Q ss_pred CCCcEEEEE-ec--C---CCHHHHHHHHHHHHHCCCeEEEECCChHH----HhhhhhHHHhhccCCCceEEEcCHHHHHH
Q 023557 169 KGSKWLVLR-FG--M---FNFEVIQAAIRIAKQEGLSVSMDLASFEM----VRNFRTPLLQLLESGDVDLCFANEDEAAE 238 (280)
Q Consensus 169 ~~~~~v~i~-~~--~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~----~~~~~~~l~~~l~~~~~dil~~N~~E~~~ 238 (280)
+++|+||++ +. . .+.+.+.++++.+++.++++++|++.... ...+++.+.++++ .+|++++|++|+..
T Consensus 144 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~--~~dil~~N~~E~~~ 221 (328)
T 4e69_A 144 ARADVVYFSGITLAILDQCGRATLLRALAQARATGRTIAFDPNLRPRLWAGTGEMTETIMQGAA--VSDIALPSFEDEAA 221 (328)
T ss_dssp TTCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGCSCHHHHHHHHHHHHT--TCSEECCBHHHHHH
T ss_pred cCCCEEEECCchhhccCchHHHHHHHHHHHHHhCCCEEEEeCCCChhhcCCHHHHHHHHHHHHH--hCCEEeCCHHHHHH
Confidence 999999999 32 1 13467788899999999999999963210 0123455667787 89999999999999
Q ss_pred HhcCCCCCcHHHHHHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 239 LVRGEENADSEAALEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 239 l~~~~~~~~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+++. ++++++++.+ +.+++.++||+|++|++++++++
T Consensus 222 l~g~---~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 259 (328)
T 4e69_A 222 WFGD---AGPDATADRYARAGVRSVVVKNGPHAVHFLQDGR 259 (328)
T ss_dssp HHTC---SSHHHHHHHHHTTTCSEEEEBCTTSCEEEEETTE
T ss_pred HcCC---CCHHHHHHHHHhcCCCEEEEEeCCCCeEEEeCCc
Confidence 9986 3677777655 45889999999999999998764
No 25
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0
Probab=99.97 E-value=2.7e-30 Score=225.95 Aligned_cols=228 Identities=17% Similarity=0.206 Sum_probs=177.7
Q ss_pred CCCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhh
Q 023557 13 SQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (280)
Q Consensus 13 ~~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~ 92 (280)
.+..+|+++| ++++|++... +..|... ..+....+||+++|+|++|++
T Consensus 6 ~~~~~v~~iG-~~~~D~~~~~-----~~~p~~~-------------------------~~~~~~~~GG~~~NvA~~la~- 53 (319)
T 3pl2_A 6 TSTHEVLAIG-RLGVDIYPLQ-----SGVGLAD-------------------------VQSFGKYLGGSAANVSVAAAR- 53 (319)
T ss_dssp -CCCSEEEES-CCEEEECBSS-----SSCCGGG-------------------------CCCBCCEEECHHHHHHHHHHH-
T ss_pred ccCCCEEEEC-hhheeeeccc-----CCCCccc-------------------------cceeeecCCCcHHHHHHHHHH-
Confidence 4567899999 9999998876 4444111 126788999999999999997
Q ss_pred cCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCC--c-CCCCCcccCccccc
Q 023557 93 FGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLS--N-AVKIQADELIAEDV 168 (280)
Q Consensus 93 lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~--~-~~~~~~~~l~~~~~ 168 (280)
||.++.++|.+|+|.+|+.+++.|++.||+++++...++ +|+.+++.++++|++++..+.+ + ...+++++++.+.+
T Consensus 54 LG~~~~~i~~vG~D~~g~~i~~~l~~~gv~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~ 133 (319)
T 3pl2_A 54 HGHNSALLSRVGNDPFGEYLLAELERLGVDNQYVATDQTFKTPVTFCEIFPPDDFPLYFYREPKAPDLNIESADVSLDDV 133 (319)
T ss_dssp TTCCEEEEEEEESSHHHHHHHHHHHHTTEECTTEEEESSSCCCEEEECCBTTTBCCEEEECCSCCGGGGCCGGGSCHHHH
T ss_pred CCCceEEEEEeCCCHHHHHHHHHHHHcCCccccEEecCCCCceEEEEEEcCCCCeeEEEecCCCcccccCChhhCCHHHh
Confidence 999999999999999999999999999999999986544 8999999888778887766533 3 45677888877788
Q ss_pred CCCcEEEEE-ecCC---CHHHHHHHHHHHHHCCCeEEEECCChHHH----hhhhhHHHhhccCCCceEEEcCHHHHHHHh
Q 023557 169 KGSKWLVLR-FGMF---NFEVIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLESGDVDLCFANEDEAAELV 240 (280)
Q Consensus 169 ~~~~~v~i~-~~~~---~~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~~~l~~~l~~~~~dil~~N~~E~~~l~ 240 (280)
++++++|++ +... ..+....+++.+++ +.++++|++..... ..+.+.+.++++ .+|++++|++|+..++
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dil~~N~~E~~~l~ 210 (319)
T 3pl2_A 134 READILWFTLTGFSEEPSRGTHREILTTRAN-RRHTIFDLDYRPMFWESPEEATKQAEWALQ--HSTVAVGNKEECEIAV 210 (319)
T ss_dssp HHCSEEEEEGGGGSSTTHHHHHHHHHHHHTT-CSCEEEECCCCGGGSSCHHHHHHHHHHHHT--TCSEEEECHHHHHHHH
T ss_pred ccCCEEEEecccccCchhHHHHHHHHHHHHH-CCcEEEeCCCChhhcCCHHHHHHHHHHHHH--hCCEEEcCHHHHHHHc
Confidence 999999999 3221 23455666666655 66789999743210 123456677887 8999999999999999
Q ss_pred cCCCCCcHHHHHHH-HhcCCCEEEEEcCCCceEEEeCCc
Q 023557 241 RGEENADSEAALEF-LAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 241 ~~~~~~~~~~~~~~-l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+. .++.++++. ++.+++.++||+|++|++++++++
T Consensus 211 g~---~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 246 (319)
T 3pl2_A 211 GE---TEPERAGRALLERGVELAIVKQGPKGVMAMTKDE 246 (319)
T ss_dssp SC---CSHHHHHHHHHHTTCSEEEEEEETTEEEEECSSC
T ss_pred CC---CCHHHHHHHHHhcCCCEEEEEECCCCeEEEECCc
Confidence 85 356666654 456889999999999999998764
No 26
>3iq0_A Putative ribokinase II; transferase,kinase,SAD,ribose, D-ribose metabolic process, PFKB family,11206G, PSI-II, NYSGXRC, structural genomics; HET: ATP; 1.79A {Escherichia coli O6} SCOP: c.72.1.0 PDB: 3k9e_A
Probab=99.97 E-value=5.9e-30 Score=224.87 Aligned_cols=227 Identities=21% Similarity=0.286 Sum_probs=175.6
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~ 95 (280)
.+|+++| .+++|++... ..-. .... . ......+||+++|+|+++++ ||.
T Consensus 4 ~~i~viG-~~~~D~~~~~-----~~~~----~~~~-~-------------------~~~~~~~GG~~~NvA~~la~-LG~ 52 (330)
T 3iq0_A 4 SKVFTIG-EILVEIMASK-----IGQP----FDQP-G-------------------IWNGPYPSGAPAIFIDQVTR-LGV 52 (330)
T ss_dssp CEEEEES-CCEEEEEEEE-----ETCC----SSSC-E-------------------EEEEEEEECHHHHHHHHHHH-TTC
T ss_pred CCEEEEc-ceeEEEeccC-----CCCC----cccc-c-------------------cccCcCCCCHHHHHHHHHHH-CCC
Confidence 4799999 9999999874 1111 0000 0 02356899999999999997 999
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeee-c-CCcCCCCCcccCcccccCCCc
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRP-C-LSNAVKIQADELIAEDVKGSK 172 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~-~-~~~~~~~~~~~l~~~~~~~~~ 172 (280)
++.++|.+|+|.+|+.+++.|++.||+++++...++ +|+++++.++++|+|++.. . .++...++++++..+.+++++
T Consensus 53 ~~~~i~~vG~D~~g~~i~~~l~~~gv~~~~v~~~~~~~T~~~~i~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (330)
T 3iq0_A 53 PCGIISCVGNDGFGDINIHRLAADGVDIRGISVLPLEATGSAFVTYHNSGDRDFIFNIKNAACGKLSAQHVDENILKDCT 132 (330)
T ss_dssp CEEEEEEEESSHHHHHHHHHHHHTTCBCTTEEEETTSCCEEEEEEECC---CEEEEECTTSGGGGCCGGGCCGGGGTTEE
T ss_pred cEEEEEEeCCChHHHHHHHHHHHcCCCeeeEEEcCCCCceEEEEEECCCCCeeEEEeccCChhhhCCHhhCCHhHhccCC
Confidence 999999999999999999999999999999987654 8999999998889985433 3 245556778888777889999
Q ss_pred EEEEE-ecCCC---HHHHHHHHHHHHHCCCeEEEECCChHHH---hhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC
Q 023557 173 WLVLR-FGMFN---FEVIQAAIRIAKQEGLSVSMDLASFEMV---RNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN 245 (280)
Q Consensus 173 ~v~i~-~~~~~---~~~~~~~~~~a~~~g~~v~~D~~~~~~~---~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~ 245 (280)
+||++ +.... .+.+.++++.+++.|+++++|++..... +.+++.+.++++ .+|++++|++|+..+++.
T Consensus 133 ~v~~sg~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~l~--~~dil~~N~~E~~~l~g~--- 207 (330)
T 3iq0_A 133 HFHIMGSSLFSFHMVDAVKKAVTIVKANGGVISFDPNIRKEMLDIPEMRDALHFVLE--LTDIYMPSEGEVLLLSPH--- 207 (330)
T ss_dssp EEEEEGGGCSSHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGGGSHHHHHHHHHHHH--TCSEECCBGGGTTTTCSC---
T ss_pred EEEEechhhcCcchHHHHHHHHHHHHHcCCEEEEcCCCCccccCcHHHHHHHHHHHh--hCCEEecCHHHHHHHhCC---
Confidence 99999 33222 4567889999999999999999864310 113455666777 899999999999999885
Q ss_pred CcHHHHHHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 246 ADSEAALEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 246 ~~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
.+++++++.+ +.+++.++||+|++|++++++++
T Consensus 208 ~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~ 241 (330)
T 3iq0_A 208 STPERAIAGFLEEGVKEVIVKRGNQGASYYSANE 241 (330)
T ss_dssp SSHHHHHHHHHHHTCSEEEEECGGGCEEEECSSC
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCceEEEECCc
Confidence 4666766644 56899999999999999998764
No 27
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri}
Probab=99.97 E-value=7.1e-30 Score=223.32 Aligned_cols=218 Identities=19% Similarity=0.208 Sum_probs=170.8
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcC-
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG- 94 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG- 94 (280)
++|+++| .+++|++... . +....+||+++|+|+++++ ||
T Consensus 5 ~~i~viG-~~~~D~~~~~--------~------------------------------~~~~~~GG~~~NvA~~la~-LG~ 44 (319)
T 3lhx_A 5 KKIAVIG-ECMIELSEKG--------A------------------------------DVKRGFGGDTLNTSVYIAR-QVD 44 (319)
T ss_dssp EEEEEES-CCEEEEEC-----------------------------------------CCEEEEECHHHHHHHHHHT-TSC
T ss_pred Cceeeec-hhhhhhccCC--------C------------------------------ceEEecCChHHHHHHHHHH-cCC
Confidence 4799999 9999997543 0 4678899999999999997 99
Q ss_pred ---CcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcC---CCCCcccCc--c
Q 023557 95 ---VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNA---VKIQADELI--A 165 (280)
Q Consensus 95 ---~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~---~~~~~~~l~--~ 165 (280)
.++.++|.+|+|.+|+.+++.|++.||+++++...++ +|++++++++++|+|+++.+.+.. ..+++.+++ .
T Consensus 45 ~~~~~~~~ig~vG~D~~G~~l~~~L~~~GV~~~~v~~~~~~~T~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 124 (319)
T 3lhx_A 45 PAALTVHYVTALGTDSFSQQMLDAWHGENVDTSLTQRMENRLPGLYYIETDSTGERTFYYWRNEAAAKFWLASEQSAAIC 124 (319)
T ss_dssp TTTEEEEEECEECSSHHHHHHHHHHHTTTEECTTCEECTTCCCCEEEEEC----CCEEEEECTTCGGGGTTSSSSHHHHH
T ss_pred CCCCcEEEEEEeCCCHHHHHHHHHHHHcCCCcceEEEcCCCCceEEEEEeCCCCCeeEEEecCCCHHHhccCccchhhHH
Confidence 8999999999999999999999999999999987665 799999999888999988776532 234444433 2
Q ss_pred cccCCCcEEEEE-ecC--C---CHHHHHHHHHHHHHCCCeEEEECCChHHH----hhhhhHHHhhccCCCceEEEcCHHH
Q 023557 166 EDVKGSKWLVLR-FGM--F---NFEVIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLESGDVDLCFANEDE 235 (280)
Q Consensus 166 ~~~~~~~~v~i~-~~~--~---~~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~~~l~~~l~~~~~dil~~N~~E 235 (280)
+.++++|+||++ +.. + +.+.+.++++.+++.|+++++|++..... ..+++.+.++++ .+|++++|.+|
T Consensus 125 ~~l~~~~~v~~~g~~~~~l~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~--~~di~~~n~~E 202 (319)
T 3lhx_A 125 EELANFDYLYLSGISLAILSPTSREKLLSLLRECRAKGGKVIFDNNYRPRLWASKEETQQVYQQMLE--CTDIAFLTLDD 202 (319)
T ss_dssp HHHTTCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGSSCHHHHHHHHHHHHT--TCSEEEEEHHH
T ss_pred HHhcCCCEEEEcCchhhhcCchhHHHHHHHHHHHHhcCCEEEEeCcCCcccccCHHHHHHHHHHHHh--hCCcccCCHHH
Confidence 568899999999 321 2 24678899999999999999999753210 122345566777 89999999999
Q ss_pred HHHHhcCCCCCcHHHHHHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 236 AAELVRGEENADSEAALEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 236 ~~~l~~~~~~~~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++.+++. +++.++++.+ +.+++.++||+|++|++++++++
T Consensus 203 ~~~l~g~---~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 243 (319)
T 3lhx_A 203 EDALWGQ---QPVEDVIARTHNAGVKEVVVKRGADSCLVSIAGE 243 (319)
T ss_dssp HHHHHCC---CCHHHHHHHHHHTTCSEEEEEETTEEEEEEETTS
T ss_pred HHHHhCC---CCHHHHHHHHHhcCCCEEEEEECCCCeEEEECCc
Confidence 9999986 4667766654 56899999999999999998764
No 28
>3ktn_A Carbohydrate kinase, PFKB family; PFKB family,ribokianse,2-keto-3-deoxygluconate kinase,PSI-II, NYSGXRC,, structural genomics; 2.26A {Enterococcus faecalis}
Probab=99.97 E-value=6.8e-30 Score=225.82 Aligned_cols=228 Identities=12% Similarity=0.083 Sum_probs=176.3
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~ 95 (280)
.+|+++| .+++|++..- .+.. ....+....+||+++|+|++|++ ||.
T Consensus 3 ~~v~viG-~~~~D~~~~~-----------~~~~--------------------~~~~~~~~~~GG~~~NvA~~la~-LG~ 49 (346)
T 3ktn_A 3 LKIAAFG-EVMLRFTPPE-----------YLML--------------------EQTEQLRMNFVGTGVNLLANLAH-FQL 49 (346)
T ss_dssp CEEEEEC-CCEEEEECST-----------TCCT--------------------TTCSCCEEEEECHHHHHHHHHHH-TTC
T ss_pred CcEEEeC-hhhhhhcCCC-----------CCcc--------------------cccceeEEeccCHHHHHHHHHHH-cCC
Confidence 4799999 9999988432 1110 11236889999999999999997 999
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeec----CCcCCCCCcccCc-ccccCC
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPC----LSNAVKIQADELI-AEDVKG 170 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~----~~~~~~~~~~~l~-~~~~~~ 170 (280)
++.++|.+|+|.+|+.+++.|++.||+++++...+.+|+++++..+.+++++++.+ .++...+++++++ .+.+++
T Consensus 50 ~~~~i~~vG~D~~g~~i~~~l~~~gv~~~~v~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 129 (346)
T 3ktn_A 50 ETALITKLPANRLGEAGKAALRKLGISDQWVGEKGDHIGSFFAEMGYGIRPTQVTYQNRHQSAFGISEAKDYDFEAFLAE 129 (346)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHHTTCBCTTEEECCSCCEEEEEECCBTTBCCEEEECCCTTSTTTTCCGGGSCHHHHHTT
T ss_pred CeEEEEecCCCHHHHHHHHHHHHcCCcceEEEeCCCceEEEEEEecCCCCCceEEecCCCCChhhhCChhhcChHHHhCC
Confidence 99999999999999999999999999999998765589999888775556566555 3455667787776 457899
Q ss_pred CcEEEEE-ecC-CC---HHHHHHHHHHHHHCCCeEEEECCChHHH------hhhhhHHHhhccCCCceEEEcCHHHHHHH
Q 023557 171 SKWLVLR-FGM-FN---FEVIQAAIRIAKQEGLSVSMDLASFEMV------RNFRTPLLQLLESGDVDLCFANEDEAAEL 239 (280)
Q Consensus 171 ~~~v~i~-~~~-~~---~~~~~~~~~~a~~~g~~v~~D~~~~~~~------~~~~~~l~~~l~~~~~dil~~N~~E~~~l 239 (280)
+++||++ +.. .+ .+.+.++++.+++.|+++++|++..... ..+++.+.++++ .+|++++|++|+..+
T Consensus 130 ~~~v~~~g~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~r~~~~~~~~~~~~~~~~~~ll~--~~dil~~N~~E~~~l 207 (346)
T 3ktn_A 130 VDMVHICGISLSLTEKTRDAALILAQKAHAYQKKVCFDFNYRPSLNTANSALFMRQQYERILP--YCDIVFGSRRDLVEL 207 (346)
T ss_dssp CSEEEECTHHHHHCHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGCCHHHHHHHHHHHHHHGG--GCSEEECCHHHHHHT
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCEEEEeCCCChHHcCCccHHHHHHHHHHHHH--hCCEEEccHHHHHHH
Confidence 9999998 321 12 3678899999999999999999733210 123456777887 899999999999999
Q ss_pred hcCC-CC-----CcHHHHHHHH-hc-CCCEEEEEcCCCc-------eEEEeCCc
Q 023557 240 VRGE-EN-----ADSEAALEFL-AK-RCQWAVVTLGPNG-------CIAKHGKE 278 (280)
Q Consensus 240 ~~~~-~~-----~~~~~~~~~l-~~-~~~~vvvT~G~~G-------a~~~~~~~ 278 (280)
++.. .. +++.++++.| .+ +++.++||+|++| ++++++++
T Consensus 208 ~g~~~~~~~~~~~~~~~~~~~l~~~~g~~~vvvT~G~~G~~~~~~g~~~~~~~~ 261 (346)
T 3ktn_A 208 LGFIPREDLEGEAQETELIQRFMSQYNLEWFAGTTRSHSQNQNYLSGYLYTQNE 261 (346)
T ss_dssp SCCCCCTTSCHHHHHHHHHHHHHHHHTCSEEEEEEEEECSSCEEEEEEEECSSC
T ss_pred hCCCCCccccchHHHHHHHHHHHHhcCCCEEEEecCccccccCcceEEEEECCc
Confidence 9864 21 1345555544 43 8999999999999 88887654
No 29
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Probab=99.97 E-value=1.5e-29 Score=222.32 Aligned_cols=229 Identities=23% Similarity=0.304 Sum_probs=176.5
Q ss_pred CCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhc
Q 023557 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (280)
Q Consensus 14 ~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~l 93 (280)
+..+|+++| ++++|++... ...|.. ...+....+||+++|+|+++++ |
T Consensus 10 ~~~~i~viG-~~~~D~~~~~-----~~~~~~-------------------------~~~~~~~~~GG~~~NvA~~la~-L 57 (332)
T 2qcv_A 10 REFDLIAIG-RACIDLNAVE-----YNRPME-------------------------ETMTFSKYVGGSPANIVIGSSK-L 57 (332)
T ss_dssp CSEEEEEES-CCEEEEEESS-----CSSCGG-------------------------GCCCEEEEEESHHHHHHHHHHH-T
T ss_pred cCCcEEEEC-cceEEEecCC-----CCCCcc-------------------------ccceeEecCCCHHHHHHHHHHH-c
Confidence 346899999 9999999876 333310 0125788999999999999997 9
Q ss_pred CCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCC--CCceeEEEEEcCCCceeeeecC--CcCCCCCcccCcccccC
Q 023557 94 GVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR--GPTGQCVCLVDASGNRTMRPCL--SNAVKIQADELIAEDVK 169 (280)
Q Consensus 94 G~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~--~~T~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~l~~~~~~ 169 (280)
|.++.++|.+|+|.+|+++++.|++.||+++++...+ .+|+.+++.++.+|++.+..+. ++...+++++++...++
T Consensus 58 G~~~~~i~~vG~D~~G~~l~~~L~~~gV~~~~v~~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~a~~~l~~~~~~~~~~~ 137 (332)
T 2qcv_A 58 GLKAGFIGKIADDQHGRFIESYMRGVGVDTSNLVVDQEGHKTGLAFTEIKSPEECSILMYRQDVADLYLSPEEVNEAYIR 137 (332)
T ss_dssp TCCEEEEEEECSSHHHHHHHHHHHHTTCBCTTEEECSSCCCCCEEEEEEEETTEEEEEEECTTCGGGGCCGGGCCHHHHT
T ss_pred CCceEEEEEeCCCHHHHHHHHHHHHcCCCCcceEecCCCCCceEEEEEEcCCCCccEEEECCcchhhhCCHhHCCHHHHc
Confidence 9999999999999999999999999999999987653 3788888887766777665443 34556777777766788
Q ss_pred CCcEEEEE-ecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHH----hhhhhHHHhhccCCCceEEEcCHHHHHHHhc
Q 023557 170 GSKWLVLR-FGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 170 ~~~~v~i~-~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
++++||++ +.. .+.+.+.++++.+++.+.++++|++..... ....+.+.++++ .+|++++|++|+..+++
T Consensus 138 ~~~~v~~~g~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~ll~--~~dil~~N~~E~~~l~g 215 (332)
T 2qcv_A 138 RSKLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFELDYRPYSWETPEETAVYYSLVAE--QSDIVIGTREEFDVLEN 215 (332)
T ss_dssp TEEEEEEEGGGGSSTTHHHHHHHHHHHHHHTTCEEEEECCCCGGGSSCHHHHHHHHHHHHH--HCSEEEEEHHHHHHHTT
T ss_pred cCCEEEEeCccccCchhHHHHHHHHHHHHHCCCEEEEcCcCchhhcCCHHHHHHHHHHHHH--hCCEEEccHHHHHHHhC
Confidence 99999999 321 134778889999999999999999753110 112233455666 89999999999999988
Q ss_pred CCCCCcHHHHHHH-HhcCCCEEEEEcCCCceEEEeC
Q 023557 242 GEENADSEAALEF-LAKRCQWAVVTLGPNGCIAKHG 276 (280)
Q Consensus 242 ~~~~~~~~~~~~~-l~~~~~~vvvT~G~~Ga~~~~~ 276 (280)
....++..++++. ++.+++.++||+|++|++++++
T Consensus 216 ~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~ 251 (332)
T 2qcv_A 216 RTEKGDNDETIRYLFKHSPELIVIKHGVEGSFAYTK 251 (332)
T ss_dssp CSSCCCHHHHHHHHTTSSCSEEEEECGGGCEEEEET
T ss_pred CCcCCCHHHHHHHHHHcCCCEEEEEECCcceEEEec
Confidence 6322344555554 4568999999999999999876
No 30
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A
Probab=99.97 E-value=2.6e-29 Score=218.79 Aligned_cols=217 Identities=24% Similarity=0.279 Sum_probs=171.7
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| ++++|++... ++.... ..+....+||+++|+|+++++ ||.+
T Consensus 3 ~i~viG-~~~~D~~~~~-----------~~~~~~--------------------~~~~~~~~GG~~~NvA~~la~-LG~~ 49 (309)
T 1v1a_A 3 EVVTAG-EPLVALVPQE-----------PGHLRG--------------------KRLLEVYVGGAEVNVAVALAR-LGVK 49 (309)
T ss_dssp SEEEES-CCEEEEECSS-----------SSCGGG--------------------CCEEEEEEECHHHHHHHHHHH-HTCC
T ss_pred cEEEEc-cceEEEecCC-----------CCcccc--------------------hheeeeecCcHHHHHHHHHHH-cCCC
Confidence 699999 9999998532 111000 125778999999999999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecC--CcCCCCCcccCcccccCCCcEE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL--SNAVKIQADELIAEDVKGSKWL 174 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~l~~~~~~~~~~v 174 (280)
+.++|.+|+|.+|+.+++.|++.||+++++...+++|+++++.++++|+|++..+. ++...+++++++.+.++++++|
T Consensus 50 ~~~~~~vG~D~~g~~i~~~L~~~gv~~~~v~~~~~~t~~~~~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~v 129 (309)
T 1v1a_A 50 VGFVGRVGEDELGAMVEERLRAEGVDLTHFRRAPGFTGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPDYLEGVRFL 129 (309)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHTCBCTTEEECSSCCCEEEEEECTTSCEEEEEECTTCSGGGCCTTSSCGGGGTTCSEE
T ss_pred eEEEEEeCCCHHHHHHHHHHHHcCCCCceEEEcCCCCEEEEEEECCCCCceEEEeCCCChhhhCCHhhCChhHhcCCCEE
Confidence 99999999999999999999999999999886544899999998888888876543 4556677777777778999999
Q ss_pred EEE-ecC----CCHHHHHHHHHHHHHCCCeEEEECCChHH---HhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCC
Q 023557 175 VLR-FGM----FNFEVIQAAIRIAKQEGLSVSMDLASFEM---VRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENA 246 (280)
Q Consensus 175 ~i~-~~~----~~~~~~~~~~~~a~~~g~~v~~D~~~~~~---~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~ 246 (280)
|++ +.. .+.+.+.++++.+++.++++++|++.... .+.+.+.+.++++ .+|++++|++|+..+++.
T Consensus 130 ~~~g~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~l~--~~dil~~N~~E~~~l~g~---- 203 (309)
T 1v1a_A 130 HLSGITPALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTLWSPEEARGFLERALP--GVDLLFLSEEEAELLFGR---- 203 (309)
T ss_dssp EEETTGGGSCHHHHHHHHHHHHHHHTTTCEEEEECCCCTTTSCHHHHHHHHHHHGG--GCSEEEEEHHHHHHHHSS----
T ss_pred EEeCchhccCchHHHHHHHHHHHHHHcCCEEEEeCCCCcccCCHHHHHHHHHHHHH--hCCEEECcHHHHHHHhCC----
Confidence 999 322 13467788899999999999999985310 0122345667787 899999999999999884
Q ss_pred cHHHHHHHHhcCCCEEEEEcCCCceEEEeC
Q 023557 247 DSEAALEFLAKRCQWAVVTLGPNGCIAKHG 276 (280)
Q Consensus 247 ~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~ 276 (280)
+ +++++ +.+++.++||+|++|+++ ++
T Consensus 204 ~-~~~~~--~~g~~~vvvt~G~~G~~~-~~ 229 (309)
T 1v1a_A 204 V-EEALR--ALSAPEVVLKRGAKGAWA-FV 229 (309)
T ss_dssp H-HHHHH--HTCCSEEEEECGGGCEEE-EE
T ss_pred H-HHHHH--hcCCCEEEEEecCCCeeE-ec
Confidence 2 44444 668899999999999998 54
No 31
>3b1n_A Ribokinase, putative; rossmann fold, ATP binding, Mg binding, nucleoside B transferase; HET: MZR ADP; 1.55A {Burkholderia thailandensis} PDB: 3b1o_A 3b1p_A* 3b1q_A* 3b1r_A*
Probab=99.97 E-value=1e-29 Score=222.96 Aligned_cols=225 Identities=17% Similarity=0.180 Sum_probs=172.1
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCC----CCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhh
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPG----ERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVG 92 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~ 92 (280)
+|+++| ++++|+++.+++.+++.+-. ..|++... ......+||+++|+|+++++
T Consensus 2 ~i~v~G-~~~iD~~~~~~~~~~~~~~~~~~p~~~~~~~~--------------------~~~~~~~GG~~~NvA~~la~- 59 (326)
T 3b1n_A 2 ATLICG-SIAYDNIMTFEGRFREHILPDQVHLINLSFLV--------------------PTMRREFGGCAGNIAYALNL- 59 (326)
T ss_dssp CEEEES-CCEEEEEEECSSCGGGGCCTTSSSSCEEEEEC--------------------CSCCCEEECHHHHHHHHHHH-
T ss_pred cEEEEC-cceEEEEEecchhhhhhccccccCCCCcceec--------------------ccceeccCCHHHHHHHHHHH-
Confidence 699999 99999999986555544420 11111111 25677899999999999997
Q ss_pred cCCcEEEEEeecC-ChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCC
Q 023557 93 FGVPCGLIGAYGD-DQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKG 170 (280)
Q Consensus 93 lG~~~~~~~~vG~-D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~ 170 (280)
||.++.++|.+|+ | +|+ +++.|++.||+++++...++ +|++++++++++|++++..+.++...+++++++. . ++
T Consensus 60 LG~~~~~i~~vG~~D-~g~-i~~~L~~~gVd~~~v~~~~~~~T~~~~v~~~~~g~~~~~~~~ga~~~~~~~~~~~-~-~~ 135 (326)
T 3b1n_A 60 LGGDARMMGTLGAVD-AQP-YLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFHPGAMMQSHVNHAGE-A-KD 135 (326)
T ss_dssp TTCCEEEEEEEETTT-CHH-HHHHHHHHTCEEEEEEEETTCCCEEEEEEECTTCCCEEEEECGGGGGGGGSCGGG-C-CS
T ss_pred cCCCeeEEEEECCcC-HHH-HHHHHHHcCCcccceEEcCCCCceEEEEEECCCCceEEEEecChhhhcChhhccc-c-cC
Confidence 9999999999999 9 899 99999999999999887544 7999999999888888766666655555555543 2 78
Q ss_pred CcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhh-hhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHH
Q 023557 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNF-RTPLLQLLESGDVDLCFANEDEAAELVRGEENADSE 249 (280)
Q Consensus 171 ~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~-~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~ 249 (280)
++++|++.. .++.+.++++.+++.|.++++|++... ..+ .+.+.++++ .+|++++|++|+..+++... .+.+
T Consensus 136 ~~~v~~~~~--~~~~~~~~~~~a~~~g~~v~~D~~~~~--~~~~~~~~~~~l~--~~dil~~N~~Ea~~l~g~~~-~~~~ 208 (326)
T 3b1n_A 136 IKLAIVGPD--GFQGMVQHTEELAQAGVPFIFDPGQGL--PLFDGATLRRSIE--LATYIAVNDYEAKLVCDKTG-WSED 208 (326)
T ss_dssp CSEEEECSC--CHHHHHHHHHHHHHHTCCEEECCGGGG--GGCCHHHHHHHHH--HCSEEEEEHHHHHHHHHHHC-CCHH
T ss_pred CCEEEECCc--cHHHHHHHHHHHHHCCCEEEEeCchhh--hhccHHHHHHHHH--hCCEEecCHHHHHHHhCCCC-CCHH
Confidence 999999843 467788889999999999999997542 111 244566777 89999999999999987421 1232
Q ss_pred HHHHHHhcCCCEEEEEcCCCceEEEeCCc
Q 023557 250 AALEFLAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 250 ~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+ +.++++.+|||+|++|++++++++
T Consensus 209 ~----l~~~~~~vvvT~G~~Ga~~~~~~~ 233 (326)
T 3b1n_A 209 E----IASRVQALIITRGEHGATIRHRDG 233 (326)
T ss_dssp H----HHTTSSEEEEECGGGCEEEEETTE
T ss_pred H----HHhcCCEEEEecCCCceEEEECCc
Confidence 2 223488999999999999987654
No 32
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*
Probab=99.97 E-value=5.2e-29 Score=216.79 Aligned_cols=221 Identities=23% Similarity=0.254 Sum_probs=174.8
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~ 95 (280)
.+|+++++|+++|+++.+ +++ .+|+..... +....+||+++|+|+++++ ||.
T Consensus 2 ~~i~~v~~n~~~D~~~~v-----~~~--~~g~~~~~~--------------------~~~~~~GG~~~NvA~~la~-LG~ 53 (309)
T 3umo_A 2 VRIYTLTLAPSLDSATIT-----PQI--YPEGKLRCT--------------------APVFEPGGGGINVARAIAH-LGG 53 (309)
T ss_dssp CCEEEECSSCEEEEEEEE-----SCC--CSSSEEECC--------------------CCEEEEESHHHHHHHHHHH-TTC
T ss_pred CcEEEEecchhheEEEEc-----Ccc--cCCCeEEec--------------------eeeecCCchHHHHHHHHHH-cCC
Confidence 468888779999999999 666 466655543 7899999999999999997 999
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEc-CCCceeeeecCCcCCCCCcccCcc-----cccC
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVD-ASGNRTMRPCLSNAVKIQADELIA-----EDVK 169 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~-~~g~r~~~~~~~~~~~~~~~~l~~-----~~~~ 169 (280)
++.++|.+|+| +|+.+++.|+++||+++++...+ +|++++.+++ ++|+|+++.+.++. +++++++. +.+.
T Consensus 54 ~~~~i~~vG~d-~g~~i~~~l~~~gv~~~~v~~~~-~t~~~~~~~~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~ 129 (309)
T 3umo_A 54 SATAIFPAGGA-TGEHLVSLLADENVPVATVEAKD-WTRQNLHVHVEASGEQYRFVMPGAA--LNEDEFRQLEEQVLEIE 129 (309)
T ss_dssp CEEEEEEECHH-HHHHHHHHHHHTTCCEEEEECSS-CCCCCEEEEETTTCCEEEEECCCCC--CCHHHHHHHHHHHTTSC
T ss_pred CeEEEEEecCc-hHHHHHHHHHHcCCceEEEEecC-CCeeEEEEEECCCCcEEEEEcCCCC--CCHHHHHHHHHHHHhcC
Confidence 99999999999 99999999999999999887754 5666666555 47899888776653 66655531 1236
Q ss_pred CCcEEEEEec---CCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCC--ceEEEcCHHHHHHHhcCCC
Q 023557 170 GSKWLVLRFG---MFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGD--VDLCFANEDEAAELVRGEE 244 (280)
Q Consensus 170 ~~~~v~i~~~---~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~--~dil~~N~~E~~~l~~~~~ 244 (280)
.++++|++.. ..+.+.+.++++.+++.++++++|++. +.+.++++ . +|++++|++|++.+++...
T Consensus 130 ~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~--------~~l~~~l~--~~~~dil~~N~~E~~~l~g~~~ 199 (309)
T 3umo_A 130 SGAILVISGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSG--------EALSAALA--IGNIELVKPNQKELSALVNREL 199 (309)
T ss_dssp TTCEEEEESCCCTTCCHHHHHHHHHHHHHTTCEEEEECCH--------HHHHHHTS--SCCBSEECCBHHHHHHHHTSCC
T ss_pred CCCEEEEEccCCCCCCHHHHHHHHHHHHhcCCEEEEECCc--------HHHHHHhc--cCCCeEEEeCHHHHHHHhCCCC
Confidence 7889999932 135788999999999999999999964 23556666 4 6999999999999998642
Q ss_pred --CCcHHHHHHHH-hcCC-CEEEEEcCCCceEEEeCCc
Q 023557 245 --NADSEAALEFL-AKRC-QWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 245 --~~~~~~~~~~l-~~~~-~~vvvT~G~~Ga~~~~~~~ 278 (280)
.++..++++.+ +.+. +.++||+|++|++++++++
T Consensus 200 ~~~~~~~~~~~~l~~~g~~~~vvvt~G~~G~~~~~~~~ 237 (309)
T 3umo_A 200 TQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSEN 237 (309)
T ss_dssp CSTTHHHHHHHHHHHTTSBSCEEEECGGGCEEEECSSC
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEcCcccEEEEECCc
Confidence 23566666554 5565 8999999999999998765
No 33
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Probab=99.97 E-value=1.9e-29 Score=221.98 Aligned_cols=229 Identities=16% Similarity=0.187 Sum_probs=175.2
Q ss_pred CCeEEEecCCeeEeEEeecChhHHHhCCC----CCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHH
Q 023557 15 AALILGLQPAALIDHVARVDWSLLDQIPG----ERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLS 90 (280)
Q Consensus 15 ~~~i~~iG~~~~vD~~~~~~~~~l~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la 90 (280)
.++|+++| ++++|+++.+++.+++.+-. ..|.... .......+||+++|+|++++
T Consensus 10 ~m~i~v~G-~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~GG~~~NvA~~la 68 (334)
T 2pkf_A 10 HMTIAVTG-SIATDHLMRFPGRFSEQLLPEHLHKVSLSFL--------------------VDDLVMHRGGVAGNMAFAIG 68 (334)
T ss_dssp SSEEEEES-CCEEEEEEECSSCTHHHHTTSCGGGCCCCCC--------------------CSEEEEEEECHHHHHHHHHH
T ss_pred CCeEEEEC-ChhheEEEecChHHhhhhchhhccccccccc--------------------cccceecCCChHHHHHHHHH
Confidence 36899999 99999999985544544410 0111101 12577889999999999999
Q ss_pred hhcCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcccCccc--c
Q 023557 91 VGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAE--D 167 (280)
Q Consensus 91 ~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~--~ 167 (280)
+ ||.++.++|.+|+| +|+ +++.|++.||+++++.+.++ +|++++++++++|+|++..+.++...++++++... .
T Consensus 69 ~-LG~~~~~i~~vG~D-~g~-i~~~L~~~gV~~~~v~~~~~~~T~~~~~~~~~~g~~~~~~~~ga~~~~~~~~~~~~~~~ 145 (334)
T 2pkf_A 69 V-LGGEVALVGAAGAD-FAD-YRDWLKARGVNCDHVLISETAHTARFTCTTDVDMAQIASFYPGAMSEARNIKLADVVSA 145 (334)
T ss_dssp H-TTCEEEEECEECGG-GHH-HHHHHHTTTEECTTCEECSSCCCEEEEEEECTTCCEEEEEECGGGGGGGGCCHHHHHHH
T ss_pred H-cCCCeEEEEEEeCc-hHH-HHHHHHHCCCceeeeEecCCCCceEEEEEEcCCCCEEEEECCchhhhCCHhhcChhhhh
Confidence 7 99999999999999 999 99999999999999887644 79999999998889988766676655555555432 3
Q ss_pred cCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhh-hhHHHhhccCCCceEEEcCHHHHHHHhcCCCCC
Q 023557 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNF-RTPLLQLLESGDVDLCFANEDEAAELVRGEENA 246 (280)
Q Consensus 168 ~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~-~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~ 246 (280)
+++++++|++.. .++.+.++++.+++.+.++++|++... ..| .+.+.++++ .+|++++|++|+..+++... .
T Consensus 146 l~~~~~v~~~~~--~~~~~~~~~~~a~~~g~~v~~D~~~~~--~~~~~~~l~~~l~--~~dil~~N~~E~~~l~g~~~-~ 218 (334)
T 2pkf_A 146 IGKPELVIIGAN--DPEAMFLHTEECRKLGLAFAADPSQQL--ARLSGEEIRRLVN--GAAYLFTNDYEWDLLLSKTG-W 218 (334)
T ss_dssp HCSCSEEEEESC--CHHHHHHHHHHHHHHTCCEEEECGGGG--GTSCHHHHHTTTT--TCSEEEEEHHHHHHHHHHHC-C
T ss_pred hcCCCEEEEcCC--ChHHHHHHHHHHHhcCCeEEEeccchh--hhhhHHHHHHHHh--cCCEEecCHHHHHHHhccCC-C
Confidence 588999999943 367788889999999999999997542 112 345667787 89999999999999987421 1
Q ss_pred cHHHHHHHHhcCCCEEEEEcCCCceEEEeCCc
Q 023557 247 DSEAALEFLAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 247 ~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+.++ ++ ++++.++||+|++|++++++++
T Consensus 219 ~~~~---l~-~~~~~vvvt~G~~G~~~~~~~~ 246 (334)
T 2pkf_A 219 SEAD---VM-AQIDLRVTTLGPKGVDLVEPDG 246 (334)
T ss_dssp CHHH---HH-TTCSCEEEECGGGCEEEECTTS
T ss_pred CHHH---HH-hcCCEEEEEeCCCCeEEEeCCC
Confidence 2222 23 3488999999999999987654
No 34
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase; 2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB: 1tz3_A* 1tz6_A*
Probab=99.96 E-value=1.4e-29 Score=223.27 Aligned_cols=216 Identities=19% Similarity=0.311 Sum_probs=165.0
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| ++++|++... . .+....+||+++|+|+++++ ||.+
T Consensus 26 ~ilviG-~~~~D~~~~~--------~-----------------------------~~~~~~~GG~~~NvA~~la~-LG~~ 66 (339)
T 1tyy_A 26 KVWVIG-DASVDLVPEK--------Q-----------------------------NSYLKCPGGASANVGVCVAR-LGGE 66 (339)
T ss_dssp CEEEES-CCEEEEEECS--------S-----------------------------SEEEEEEECHHHHHHHHHHH-TTCC
T ss_pred CEEEEC-cceeEEeccC--------C-----------------------------CceEEcCCCHHHHHHHHHHH-cCCC
Confidence 699999 9999998863 1 14677899999999999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecC--CcCCCCCcccCcccccCCCcE
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCL--SNAVKIQADELIAEDVKGSKW 173 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 173 (280)
+.++|.+|+|.+|+.+++.|++.||+++++...++ +|+++++.++++|+|++..+. ++...++++ ..+.++++++
T Consensus 67 ~~~ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~T~~~~v~~~~~g~r~~~~~~~~~a~~~l~~~--~~~~l~~~~~ 144 (339)
T 1tyy_A 67 CGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSFTYLVHPGADTYVSPQ--DLPPFRQYEW 144 (339)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTTEECTTEEECTTSCCCEEEEC-------CEEECCSSCGGGGCCGG--GCCCCCTTCE
T ss_pred eEEEEeeCCCHHHHHHHHHHHHcCCCchheEecCCCCCeEEEEEEcCCCCeEEEEecCCChhhhCCcc--hhhHhccCCE
Confidence 99999999999999999999999999999987554 799999988878888876544 444445544 2346788999
Q ss_pred EEEE-ecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHH----hhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC
Q 023557 174 LVLR-FGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMV----RNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN 245 (280)
Q Consensus 174 v~i~-~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~----~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~ 245 (280)
||++ +.+ .+.+.+.++++.+++.++++++|++..... +.+.+.+.++++ .+|++++|++|+..+++..
T Consensus 145 v~~~~~~l~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~--~~dil~~N~~Ea~~l~g~~-- 220 (339)
T 1tyy_A 145 FYFSSIGLTDRPAREACLEGARRMREAGGYVLFDVNLRSKMWGNTDEIPELIARSAA--LASICKVSADELCQLSGAS-- 220 (339)
T ss_dssp EEEEHHHHSSHHHHHHHHHHHHHHHHTTCEEEEECCCCGGGCSCGGGHHHHHHHHHH--HCSEEEEEHHHHHHHHCCS--
T ss_pred EEEcchhhcCcccHHHHHHHHHHHHHcCCEEEEeCCCCccccCCHHHHHHHHHHHHh--hCCEEecCHHHHHHHhCCC--
Confidence 9998 322 234677889999999999999999743210 123445566777 8999999999999999863
Q ss_pred CcHHHHHHH-HhcCCCEEEEEcCCCceEEEeCCc
Q 023557 246 ADSEAALEF-LAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 246 ~~~~~~~~~-l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+++++++. ++.+++.+|||+|++|++++++++
T Consensus 221 -~~~~~~~~l~~~g~~~VvvT~G~~G~~~~~~~~ 253 (339)
T 1tyy_A 221 -HWQDARYYLRDLGCDTTIISLGADGALLITAEG 253 (339)
T ss_dssp -SGGGGSSTTGGGTCSCEEEECGGGCEEEESSSC
T ss_pred -CHHHHHHHHHHcCCCEEEEEECCCceEEEeCCc
Confidence 44444443 345889999999999999987654
No 35
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A*
Probab=99.96 E-value=1e-28 Score=214.93 Aligned_cols=220 Identities=24% Similarity=0.255 Sum_probs=170.5
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++++|+++|+++.+ ++ + .+|+..... +....+||+++|+|+++++ ||.+
T Consensus 3 ~I~~v~g~~~~D~~~~~-----~~-~-~~g~~~~~~--------------------~~~~~~GG~~~NvA~~la~-LG~~ 54 (309)
T 3cqd_A 3 RIYTLTLAPSLDSATIT-----PQ-I-YPEGKLRCT--------------------APVFEPGGGGINVARAIAH-LGGS 54 (309)
T ss_dssp CEEEECSSCEEEEEEEE-----SC-C-CSSSEEECC--------------------CCEEEEESHHHHHHHHHHH-TTCC
T ss_pred eEEEEeccchheEEEEc-----CC-C-cCCCeeecc--------------------ceeecCCchHHHHHHHHHH-cCCC
Confidence 68866459999999999 55 3 566555532 6889999999999999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEE-EcCCCceeeeecCCcCCCCCcccCc------ccccC
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCL-VDASGNRTMRPCLSNAVKIQADELI------AEDVK 169 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~-~~~~g~r~~~~~~~~~~~~~~~~l~------~~~~~ 169 (280)
+.++|.+|+| +|+.+++.|++.||+++++...+ .|++++++ ++++|+|+++...++ .+++++++ .+.++
T Consensus 55 ~~~i~~vG~d-~g~~i~~~l~~~gv~~~~v~~~~-~t~~~~~~~~~~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~ 130 (309)
T 3cqd_A 55 ATAIFPAGGA-TGEHLVSLLADENVPVATVEAKD-WTRQNLHVHVEASGEQYRFVMPGA--ALNEDEFRQLEEQVLEIES 130 (309)
T ss_dssp EEEEEEECHH-HHHHHHHHHHHTTCCEEEEECSS-CCCCCEEEEETTTCCEEEEECCCC--CCCHHHHHHHHHHHHTSCT
T ss_pred eEEEEEecCc-hHHHHHHHHHHcCCCceeEEcCC-CCeeEEEEEEcCCCCEEEEEcCCC--CCCHHHHHHHHHHHHHhhc
Confidence 9999999998 99999999999999999987654 47777777 888888877666554 35555443 13467
Q ss_pred CCcEEEEEecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCc-eEEEcCHHHHHHHhcCCC-
Q 023557 170 GSKWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDV-DLCFANEDEAAELVRGEE- 244 (280)
Q Consensus 170 ~~~~v~i~~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~-dil~~N~~E~~~l~~~~~- 244 (280)
+ +++|++... .+.+.+.++++.+++.+.++++|+++. .+.+.+. +.+ |++++|++|+..+++...
T Consensus 131 ~-~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~--------~~~~~l~-~~~~dil~~N~~E~~~l~g~~~~ 200 (309)
T 3cqd_A 131 G-AILVISGSLPPGVKLEKLTQLISAAQKQGIRCIVDSSGE--------ALSAALA-IGNIELVKPNQKELSALVNRELT 200 (309)
T ss_dssp T-CEEEEESCCCTTCCHHHHHHHHHHHHTTTCEEEEECCHH--------HHHHHTT-TCCBSEECCBHHHHHHHHTSCCC
T ss_pred C-CEEEEECCCCCCCCHHHHHHHHHHHHHcCCeEEEECChH--------HHHHHHH-hCCCEEEeeCHHHHHHHhCCCCC
Confidence 7 999998321 246788899999999999999999753 1233332 278 999999999999998642
Q ss_pred -CCcHHHHHHHH-hcC-CCEEEEEcCCCceEEEeCCc
Q 023557 245 -NADSEAALEFL-AKR-CQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 245 -~~~~~~~~~~l-~~~-~~~vvvT~G~~Ga~~~~~~~ 278 (280)
.+++.++++.+ +.+ ++.++||+|++|++++++++
T Consensus 201 ~~~~~~~~~~~l~~~g~~~~vvvt~G~~G~~~~~~~~ 237 (309)
T 3cqd_A 201 QPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSEN 237 (309)
T ss_dssp STTHHHHHHHHHHHTTSBSCEEEECGGGCEEEECSSC
T ss_pred CHHHHHHHHHHHHHcCCCCEEEEEecCCceEEEECCc
Confidence 23455565544 567 89999999999999987654
No 36
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A*
Probab=99.96 E-value=4.6e-29 Score=217.57 Aligned_cols=220 Identities=18% Similarity=0.223 Sum_probs=169.3
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| ++++|++... +|.... ..+....+||+++|+|+++++ ||.+
T Consensus 3 ~v~viG-~~~~D~~~~~-----------~~~~~~--------------------~~~~~~~~GG~~~N~A~~la~-LG~~ 49 (313)
T 2v78_A 3 DVIALG-EPLIQFNSFN-----------PGPLRF--------------------VNYFEKHVAGSELNFCIAVVR-NHLS 49 (313)
T ss_dssp CEEEEC-CCEEEEEESS-----------SSCGGG--------------------CCEEEEEEECHHHHHHHHHHH-TTCC
T ss_pred eEEEEC-cceEEEecCC-----------CCcccc--------------------cceeEecCCChHHHHHHHHHH-CCCc
Confidence 699999 9999999643 111100 125788999999999999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEE--EcCCCceeeeecC--CcCCCCCcccCcccccCCC
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCL--VDASGNRTMRPCL--SNAVKIQADELIAEDVKGS 171 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~--~~~~g~r~~~~~~--~~~~~~~~~~l~~~~~~~~ 171 (280)
+.++|.+|+|.+|+.+++.|++.||+++++...++ +|+++++. ++++|+|++..+. ++...+++++++.+.++++
T Consensus 50 ~~~i~~vG~D~~g~~~~~~l~~~gv~~~~v~~~~~~~t~~~~~~~~~~~~g~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 129 (313)
T 2v78_A 50 CSLIARVGNDEFGKNIIEYSRAQGIDTSHIKVDNESFTGIYFIQRGYPIPMKSELVYYRKGSAGSRLSPEDINENYVRNS 129 (313)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHTTCBCTTEEEETTSCCCEEEEEESSSSTTCEEEEEECTTCSGGGCCGGGCCHHHHHTS
T ss_pred EEEEEEeCCCHHHHHHHHHHHHcCCcCceEEEcCCCCceEEEEEEecCCCCCeeEEEeCCcChhHhCChhhCCHHHhcCC
Confidence 99999999999999999999999999999887554 89999998 8778888876543 5566778887777778899
Q ss_pred cEEEEE-ecC----CCHHHHHHHHHHHHHCCCeEEEECCChHH----HhhhhhHHHhhccCCCce--EEEcCHHHHHHHh
Q 023557 172 KWLVLR-FGM----FNFEVIQAAIRIAKQEGLSVSMDLASFEM----VRNFRTPLLQLLESGDVD--LCFANEDEAAELV 240 (280)
Q Consensus 172 ~~v~i~-~~~----~~~~~~~~~~~~a~~~g~~v~~D~~~~~~----~~~~~~~l~~~l~~~~~d--il~~N~~E~~~l~ 240 (280)
++||++ +.. .+.+.+.++++.+++. ++|++.... ...+++.+.++++ .+| ++++|++|+..++
T Consensus 130 ~~v~~~g~~~~~~~~~~~~~~~~~~~a~~~----~~D~~~~~~~~~~~~~~~~~~~~~l~--~~d~~il~~N~~E~~~l~ 203 (313)
T 2v78_A 130 RLVHSTGITLAISDNAKEAVIKAFELAKSR----SLDTNIRPKLWSSLEKAKETILSILK--KYDIEVLITDPDDTKILL 203 (313)
T ss_dssp SEEEEEHHHHHHCHHHHHHHHHHHHHCSSE----EEECCCCGGGSSCHHHHHHHHHHHHH--HSCEEEEEECHHHHHHHH
T ss_pred CEEEEcCchhhcChHHHHHHHHHHHHHHHh----CcCCcCChhhcCCHHHHHHHHHHHHH--hcCeeEEECcHHHHHHHh
Confidence 999999 321 1235566666665543 899975310 0122345666777 899 9999999999999
Q ss_pred cCCCCCcHHHHHHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 241 RGEENADSEAALEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 241 ~~~~~~~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+. ++++++++.+ +.+++.++||+|++|++++++++
T Consensus 204 g~---~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 239 (313)
T 2v78_A 204 DV---TDPDEAYRKYKELGVKVLLYKLGSKGAIAYKDNV 239 (313)
T ss_dssp SC---CCHHHHHHHHHHTTEEEEEEECGGGCEEEEETTE
T ss_pred CC---CCHHHHHHHHHhCCCCEEEEEECCCCcEEeeCCc
Confidence 85 4666666644 55789999999999999987654
No 37
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Probab=99.96 E-value=2.5e-28 Score=213.86 Aligned_cols=222 Identities=18% Similarity=0.221 Sum_probs=170.9
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~ 95 (280)
+.++++| ++++|+++.+ ++ | ..|++.... +....+||+++|+|+++++ ||.
T Consensus 3 m~i~v~g-~~~~D~~~~v-----~~-~-~~g~~~~~~--------------------~~~~~~GG~~~NvA~~la~-LG~ 53 (323)
T 2f02_A 3 LIVTVTM-NPSIDISYLL-----DH-L-KLDTVNRTS--------------------QVTKTPGGKGLNVTRVIHD-LGG 53 (323)
T ss_dssp CEEEEES-SCEEEEEEEC-----SC-C-CTTSEEEES--------------------CEEEEEESHHHHHHHHHHH-HTC
T ss_pred eEEEEec-CceeEEEEec-----CC-c-ccCCEEEec--------------------eEEEcCCcHHHHHHHHHHH-cCC
Confidence 5789999 9999999999 55 3 566665543 6889999999999999997 999
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcc------cccC
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------EDVK 169 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~------~~~~ 169 (280)
++.++|.+|+ .+|+++++.|++.||+++++...+ .|++++++++++ +++++...++ .+++++++. +.++
T Consensus 54 ~~~~~~~vG~-~~G~~i~~~L~~~gV~~~~v~~~~-~t~~~~~~~~~~-~~~~~~~~g~--~l~~~~~~~~~~~~~~~~~ 128 (323)
T 2f02_A 54 DVIATGVLGG-FHGAFIANELKKANIPQAFTSIKE-ETRDSIAILHEG-NQTEILEAGP--TVSPEEISNFLENFDQLIK 128 (323)
T ss_dssp CEEEEEEEEH-HHHHHHHHHHHHTTCCBCCEEESS-CCEEEEEEEETT-EEEEEEECCC--BCCHHHHHHHHHHHHHHHT
T ss_pred CeEEEEEecc-chHHHHHHHHHHCCCceeEEEcCC-CCeeEEEEEcCC-CeEEEECCCC--CCCHHHHHHHHHHHHHhcc
Confidence 9999999997 599999999999999999888764 588888888866 6766555453 356554431 2468
Q ss_pred CCcEEEEEecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC-
Q 023557 170 GSKWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN- 245 (280)
Q Consensus 170 ~~~~v~i~~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~- 245 (280)
++|++|++... .+.+.+.++++.+++.|+++++|+++.. +.+.+.. ++ .+|++++|++|+..+++....
T Consensus 129 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~----~~~~l~~-~~--~~dil~~N~~E~~~l~g~~~~~ 201 (323)
T 2f02_A 129 QAEIVTISGSLAKGLPSDFYQELVQKAHAQEVKVLLDTSGDS----LRQVLQG-PW--KPYLIKPNLEELEGLLGQDFSE 201 (323)
T ss_dssp TCSEEEEESCCCBTSCTTHHHHHHHHHHHTTCEEEEECCTHH----HHHHHHS-SC--CCSEECCBHHHHHHHHTCCCCS
T ss_pred CCCEEEEECCCCCCCChHHHHHHHHHHHHCCCEEEEECChHH----HHHHHhc-cC--CCeEEecCHHHHHHHhCCCCCC
Confidence 99999998221 2457888999999999999999998641 2222221 13 799999999999999986422
Q ss_pred ---CcHHHHHHH-HhcCCCEEEEEcCCCceEEEeCCc
Q 023557 246 ---ADSEAALEF-LAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 246 ---~~~~~~~~~-l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+++.++++. ++.+++.++||+|++|++++++++
T Consensus 202 ~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 238 (323)
T 2f02_A 202 NPLAAVQTALTKPMFAGIEWIVISLGKDGAIAKHHDQ 238 (323)
T ss_dssp SCHHHHHHHHTSGGGTTCSEEEEECGGGCEEEEETTE
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeecCCceEEEeCCC
Confidence 234444443 345889999999999999987654
No 38
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational changes, transferase, lactose metabolism; HET: MSE ANP TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Probab=99.96 E-value=1.9e-28 Score=215.33 Aligned_cols=221 Identities=18% Similarity=0.256 Sum_probs=168.7
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~ 95 (280)
+.++++| ++++|+++.+ +++ ..|+..... +....+||+++|+|+++++ ||.
T Consensus 21 Mi~~v~G-~~~~D~~~~~-----~~~--~~g~~~~~~--------------------~~~~~~GG~~~NvA~~la~-LG~ 71 (330)
T 2jg1_A 21 MILTLTL-NPSVDISYPL-----TAL--KLDDVNRVQ--------------------EVSKTAGGKGLNVTRVLAQ-VGE 71 (330)
T ss_dssp CEEEEES-SCEEEEEEEE-----SCC--CTTSEEEES--------------------CCEEEEECHHHHHHHHHHH-HTC
T ss_pred EEEEEec-chhheEEEec-----CCc--cCCceEEec--------------------eEEEcCCchHHHHHHHHHH-hCC
Confidence 3344777 9999999999 544 456655542 6888999999999999997 999
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcc------cccC
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------EDVK 169 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~------~~~~ 169 (280)
++.++|.+|+ .+|+.+++.|++.||+++++...+ .|++++++++++ +++++...++ .+++++++. +.++
T Consensus 72 ~~~~i~~vG~-~~G~~l~~~L~~~gV~~~~v~~~~-~t~~~~~~v~~~-~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~ 146 (330)
T 2jg1_A 72 PVLASGFIGG-ELGQFIAKKLDHADIKHAFYNIKG-ETRNCIAILHEG-QQTEILEQGP--EIDNQEAAGFIKHFEQMME 146 (330)
T ss_dssp CEEEEEEEEH-HHHHHHHHHHHHTTCEECCEEESS-CCEEEEEEEETT-EEEEEEECCC--BCCHHHHHHHHHHHHHHGG
T ss_pred CeEEEEEecc-hhHHHHHHHHHHCCCceeEEEccC-CCeeEEEEEeCC-CcEEEECCCC--CCCHHHHHHHHHHHHHhcC
Confidence 9999999996 699999999999999999988764 588888888865 6766555443 355554431 2368
Q ss_pred CCcEEEEEecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccC-CCceEEEcCHHHHHHHhcCCCC
Q 023557 170 GSKWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLES-GDVDLCFANEDEAAELVRGEEN 245 (280)
Q Consensus 170 ~~~~v~i~~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~-~~~dil~~N~~E~~~l~~~~~~ 245 (280)
++|++|++... .+.+.+.++++.+++.|+++++|+++. .+.+++++ +.+|++++|++|+..+++....
T Consensus 147 ~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~--------~l~~~l~~~~~~dil~~N~~E~~~l~g~~~~ 218 (330)
T 2jg1_A 147 KVEAVAISGSLPKGLNQDYYAQIIERCQNKGVPVILDCSGA--------TLQTVLENPYKPTVIKPNISELYQLLNQPLD 218 (330)
T ss_dssp GCSEEEEESCCCBTSCTTHHHHHHHHHHTTTCCEEEECCHH--------HHHHHHTSSSCCSEECCBHHHHHHHTTSCCC
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCcH--------HHHHHHhccCCceEEEeCHHHHHHHhCCCCC
Confidence 89999998221 245778899999999999999999743 23334420 1699999999999999886421
Q ss_pred ---CcHHHHHHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 246 ---ADSEAALEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 246 ---~~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+++.++++.+ +.+++.++||+|++|++++++++
T Consensus 219 ~~~~~~~~~~~~l~~~g~~~VvvT~G~~Ga~~~~~~~ 255 (330)
T 2jg1_A 219 ESLESLKQAVSQPLFEGIEWIIVSLGAQGAFAKHNHT 255 (330)
T ss_dssp CCHHHHHHHHHSGGGTTCSEEEEECGGGCEEEEETTE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeecCCceEEEeCCC
Confidence 2344455543 45889999999999999987764
No 39
>2ajr_A Sugar kinase, PFKB family; TM0828, possible 1-phosphofructokinase (EC 2.7.1.56), struct genomics, joint center for structural genomics, JCSG; HET: MSE; 2.46A {Thermotoga maritima} SCOP: c.72.1.1
Probab=99.96 E-value=7.5e-29 Score=217.91 Aligned_cols=226 Identities=15% Similarity=0.157 Sum_probs=172.8
Q ss_pred CCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhc
Q 023557 14 QAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGF 93 (280)
Q Consensus 14 ~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~l 93 (280)
+-+.++++| ++++|+++.+ ++ | .+|+...+. +..+....+||+++|+|+++++ |
T Consensus 11 ~~~~~~v~G-~~~vD~~~~~-----~~-~-~~g~~~~~s-----------------~~~~~~~~~GG~~~NvA~~la~-L 64 (331)
T 2ajr_A 11 HHMVLTVTL-NPALDREIFI-----ED-F-QVNRLYRIN-----------------DLSKTQMSPGGKGINVSIALSK-L 64 (331)
T ss_dssp -CCEEEEES-SCEEEEEEEC-----TT-C-CSSCEEECC-----------------SGGGEEEEEESHHHHHHHHHHH-T
T ss_pred cceEEEEec-chHHeEEEEc-----CC-c-cCCceEEec-----------------cccceEEecCcHHHHHHHHHHH-c
Confidence 356799999 9999999999 55 4 566655541 0015788999999999999997 9
Q ss_pred CCcEEEEEeecCChhHHHHHHHHHhCC--CccceeeeCCCCceeEEEEEcCCCce-eeeecCCcCCCCCcccCcc-----
Q 023557 94 GVPCGLIGAYGDDQQGQLFVSNMQFSG--VDVSRLRMKRGPTGQCVCLVDASGNR-TMRPCLSNAVKIQADELIA----- 165 (280)
Q Consensus 94 G~~~~~~~~vG~D~~g~~i~~~L~~~g--V~~~~v~~~~~~T~~~~~~~~~~g~r-~~~~~~~~~~~~~~~~l~~----- 165 (280)
|.++.++|.+|+| +|+.+++.|++.| |+++++...+ .|++++++++++|+| +++...++ .+++++++.
T Consensus 65 G~~~~~~~~vG~d-~G~~i~~~L~~~g~~V~~~~v~~~~-~t~~~~~~v~~~g~~~~~~~~~g~--~l~~~~~~~~~~~~ 140 (331)
T 2ajr_A 65 GVPSVATGFVGGY-MGKILVEELRKISKLITTNFVYVEG-ETRENIEIIDEKNKTITAINFPGP--DVTDMDVNHFLRRY 140 (331)
T ss_dssp TCCEEEEEEEEHH-HHHHHHHHHHHHCTTEEEEEEEESS-CCEEEEEEEETTTTEEEEEECCCC--CCCHHHHHHHHHHH
T ss_pred CCCeEEEEEecCc-hHHHHHHHHHHcCCccceEEEEcCC-CCeEEEEEEeCCCceEEEEeCCCC--CCCHHHHHHHHHHH
Confidence 9999999999998 9999999999999 9999888764 588888888878888 66555554 356555432
Q ss_pred -cccCCCcEEEEEecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccC-CCceEEEcCHHH-HHHH
Q 023557 166 -EDVKGSKWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLES-GDVDLCFANEDE-AAEL 239 (280)
Q Consensus 166 -~~~~~~~~v~i~~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~-~~~dil~~N~~E-~~~l 239 (280)
+.+++++++|++... .+.+.+.++++.+++.|+++++|+++. .+.+++++ +.+|++++|++| +..+
T Consensus 141 ~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~--------~~~~~l~~~~~~dil~~N~~E~~~~l 212 (331)
T 2ajr_A 141 KMTLSKVDCVVISGSIPPGVNEGICNELVRLARERGVFVFVEQTPR--------LLERIYEGPEFPNVVKPDLRGNHASF 212 (331)
T ss_dssp HHHHTTCSEEEEESCCCTTSCTTHHHHHHHHHHHTTCEEEEECCHH--------HHHHHHHSSCCCSEECCCCTTCCSCB
T ss_pred HHhcccCCEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECChH--------HHHHHHhcCCCCeEEEeCccchHHHH
Confidence 346889999998321 235788899999999999999999753 23333430 148999999999 9988
Q ss_pred hcCCCC--CcHHHHHH-HHhcCCCEEEEEcCCCceEEEeCCc
Q 023557 240 VRGEEN--ADSEAALE-FLAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 240 ~~~~~~--~~~~~~~~-~l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++.... +++.++++ +++. ++.++||+|++|++++++++
T Consensus 213 ~g~~~~~~~~~~~~~~~l~~~-~~~vvvT~G~~Ga~~~~~~~ 253 (331)
T 2ajr_A 213 LGVDLKTFDDYVKLAEKLAEK-SQVSVVSYEVKNDIVATREG 253 (331)
T ss_dssp TTBCCCSHHHHHHHHHHHHHH-SSEEEEEETTTEEEEECSSC
T ss_pred hCCCCCCHHHHHHHHHHHHHh-cCEEEEeecCCceEEEeCCc
Confidence 875422 13334444 4455 89999999999999987664
No 40
>2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A*
Probab=99.96 E-value=1.5e-28 Score=214.15 Aligned_cols=222 Identities=22% Similarity=0.261 Sum_probs=167.9
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
+|+++| ++++|++... +|.... ..+....+||+++|+|+++++ ||.+
T Consensus 3 ~v~viG-~~~~D~~~~~-----------~~~~~~--------------------~~~~~~~~GG~~~NvA~~la~-LG~~ 49 (311)
T 2dcn_A 3 KLITLG-EILIEFNALS-----------PGPLRH--------------------VSYFEKHVAGSEANYCVAFIK-QGNE 49 (311)
T ss_dssp EEEEES-CCEEEEEESS-----------SSCGGG--------------------CCEEEEEEECHHHHHHHHHHH-TTCE
T ss_pred CEEEEC-CceEEEecCC-----------CCcccc--------------------cceeeecCCChHHHHHHHHHH-CCCc
Confidence 799999 9999998743 111100 125778999999999999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCc--eeeeecC--CcCCCCCcccCcccccCCC
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGN--RTMRPCL--SNAVKIQADELIAEDVKGS 171 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~--r~~~~~~--~~~~~~~~~~l~~~~~~~~ 171 (280)
+.++|.+|+|.+|+.+++.|++.||+++++...++ +|+++++.++++|+ |++..+. ++...+++++++.+.++++
T Consensus 50 ~~~~~~vG~D~~g~~i~~~l~~~gv~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 129 (311)
T 2dcn_A 50 CGIIAKVGDDEFGYNAIEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVPLKSESIYYRKGSAGSKLSPEDVDEEYVKSA 129 (311)
T ss_dssp EEEECEEESSHHHHHHHHHHHHTTCBCTTCEEETTSCCCEEEEEESCSSTTCEEEEEECTTCTGGGCCGGGCCHHHHTTC
T ss_pred eEEEEEeCCCHHHHHHHHHHHHcCCCcceEEEcCCCCceEEEEEECCCCCccceEEEecCcChhhhCChhhcChHHHcCC
Confidence 99999999999999999999999999999887554 89999999988888 8876543 5566778887777778999
Q ss_pred cEEEEE-ecC----CCHHHHHHHHHHHHHCCCeEEEECCChHH---HhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCC
Q 023557 172 KWLVLR-FGM----FNFEVIQAAIRIAKQEGLSVSMDLASFEM---VRNFRTPLLQLLESGDVDLCFANEDEAAELVRGE 243 (280)
Q Consensus 172 ~~v~i~-~~~----~~~~~~~~~~~~a~~~g~~v~~D~~~~~~---~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~ 243 (280)
+++|++ +.. .+.+.+.++++.+++. ++|++.... ...+++.+.++++...+|++++|++|+..+++.
T Consensus 130 ~~v~~~g~~~~~~~~~~~~~~~~~~~a~~~----~~D~~~~~~~~~~~~~~~~~~~~l~~~~~dil~~N~~E~~~l~g~- 204 (311)
T 2dcn_A 130 DLVHSSGITLAISSTAKEAVYKAFEIASNR----SFDTNIRLKLWSAEEAKREILKLLSKFHLKFLITDTDDSKIILGE- 204 (311)
T ss_dssp SEEEEEHHHHHSCHHHHHHHHHHHHHCSSE----EEECCCCTTTSCHHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHSC-
T ss_pred CEEEEeCcccccChHHHHHHHHHHHHHHHh----CcCccCchhhCChHHHHHHHHHHHhhcCCcEEECCHHHHHHHhCC-
Confidence 999999 321 1245666666665543 899975210 011223444455300699999999999999985
Q ss_pred CCCcHHHHHHHHhcCCCEEEEEcCCCceEEEeCCc
Q 023557 244 ENADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 244 ~~~~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++++++++.+...++.++||+|++|++++++++
T Consensus 205 --~~~~~~~~~l~~~~~~vvvt~G~~G~~~~~~~~ 237 (311)
T 2dcn_A 205 --SDPDKAAKAFSDYAEIIVMKLGPKGAIVYYDGK 237 (311)
T ss_dssp --CCHHHHHHHHTTTEEEEEEEEETTEEEEEETTE
T ss_pred --CCHHHHHHHHHHhCCEEEEEECCCCcEEEeCCc
Confidence 467777665543378999999999999987654
No 41
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A*
Probab=99.96 E-value=1.9e-28 Score=213.72 Aligned_cols=216 Identities=19% Similarity=0.253 Sum_probs=169.3
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~ 95 (280)
.+|+++| ++++|++.... |... ...+....+||+++|+|+++++ ||.
T Consensus 2 ~~v~viG-~~~iD~~~~~~-----------g~~~--------------------~~~~~~~~~GG~~~NvA~~la~-LG~ 48 (313)
T 3ewm_A 2 SLIASIG-ELLIDLISVEE-----------GDLK--------------------DVRLFEKHPGGAPANVAVGVSR-LGV 48 (313)
T ss_dssp CEEEEES-CCEEEEEESSS-----------SCTT--------------------TCCEEEEEEECHHHHHHHHHHH-TTC
T ss_pred CcEEEEC-ceeeeeecCCC-----------CCcc--------------------cccceeecCCCHHHHHHHHHHH-CCC
Confidence 4799999 99999987641 1111 1136789999999999999997 999
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCC-cCCCCCcccCcccccCCCcE
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLS-NAVKIQADELIAEDVKGSKW 173 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 173 (280)
++.++|.+|+|.+|+.+++.|++.||+++++...++ +|+++++.++. |+|+++.+.+ +...+++++++.+.++++++
T Consensus 49 ~~~~ig~vG~D~~g~~i~~~l~~~gv~~~~v~~~~~~~T~~~~~~~~~-g~~~~~~~~~~a~~~l~~~~~~~~~l~~~~~ 127 (313)
T 3ewm_A 49 KSSLISKVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGIVFVQLKG-ASPSFLLYDDVAYFNMTLNDINWDIVEEAKI 127 (313)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHTTCBCTTEEEESSSCCEEEEEECSS-SSCEEEECCSSGGGCCCGGGCCHHHHHHCSE
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHcCCCccceeecCCCCceEEEEEecC-CCcceEeeccCHHHhCChhhCCHHHhCCCCE
Confidence 999999999999999999999999999999886544 89999988874 8999887765 34667888887777888999
Q ss_pred EEEE-ecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHH-----hhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCC
Q 023557 174 LVLR-FGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMV-----RNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE 244 (280)
Q Consensus 174 v~i~-~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~-----~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~ 244 (280)
+|++ +.. .+.+.+.++++.++ .+.++++|++..... +.+.+.+.++++ .+|++++|++|++.+++...
T Consensus 128 ~~~~g~~~~~~~~~~~~~~~~~~a~-~~~~v~~Dp~~~~~~~~~~~~~~~~~~~~~l~--~~di~~~N~~E~~~l~~~~~ 204 (313)
T 3ewm_A 128 VNFGSVILARNPSRETVMKVIKKIK-GSSLIAFDVNLRLDLWRGQEEEMIKVLEESIK--LADIVKASEEEVLYLENQGV 204 (313)
T ss_dssp EEEESGGGGSTTHHHHHHHHHHHHB-TTBEEEEECCCCGGGGTTCHHHHHHHHHHHHH--HCSEEEEEHHHHHHHHTTTC
T ss_pred EEEcCcccCCcchHHHHHHHHHHhc-cCCEEEEeCCCChHHcCCCHHHHHHHHHHHHh--hCCEEecCHHHHHHHhccCc
Confidence 9999 321 24577888888888 478999999754210 112345566776 89999999999998876421
Q ss_pred CCcHHHHHHHHhcCCCEEEEEcCCCceEEEeCCc
Q 023557 245 NADSEAALEFLAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 245 ~~~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
. ..+.+.++||+|++|++++++++
T Consensus 205 ~----------~~~~~~vviT~G~~G~~~~~~~~ 228 (313)
T 3ewm_A 205 E----------VKGSMLTAITLGPKGCRLIKNET 228 (313)
T ss_dssp C----------CCCSSEEEEECGGGEEEEEETTE
T ss_pred c----------ccCceEEEEEECCCCeEEEECCe
Confidence 0 12456789999999999998765
No 42
>3bf5_A Ribokinase related protein; 10640157, putative ribokinase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.91A {Thermoplasma acidophilum dsm 1728}
Probab=99.96 E-value=5.6e-29 Score=216.42 Aligned_cols=215 Identities=15% Similarity=0.147 Sum_probs=162.3
Q ss_pred eeeccCCCCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHH
Q 023557 8 INREASQAALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIR 87 (280)
Q Consensus 8 ~~~~~~~~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~ 87 (280)
-+.......+|+++| ++++|+++.+ +++| +|+..... +....+||+++|+|+
T Consensus 13 ~~~~~~~~~~v~viG-~~~iD~~~~~-----~~~p--~g~~~~~~--------------------~~~~~~GG~~~NvA~ 64 (306)
T 3bf5_A 13 ENLYFQGMRFLAYFG-HLNIDVLISV-----DSIP--REGSVNVK--------------------DLRPRFGGTAGNFAI 64 (306)
T ss_dssp ------CCEEEEEEC-CCEEEEEEEC-----SCCC--SSEEEECS--------------------EEEEEEEHHHHHHHH
T ss_pred cceeccCCCcEEEEC-CceEEEEEec-----CCCC--CCceEECc--------------------ceEecCCChHHHHHH
Confidence 344455678999999 9999999998 6676 55544322 577889999999999
Q ss_pred HHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEEEcCCCceeeeecCCcCCCCCcccCccc
Q 023557 88 GLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAE 166 (280)
Q Consensus 88 ~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~ 166 (280)
++++ ||.++.++|.+|+| +|+.+++.|++.||+++++...++ +|+++++++++ |+|+++.+.++...++ ++++
T Consensus 65 ~la~-LG~~~~~i~~vG~D-~G~~i~~~L~~~gV~~~~v~~~~~~~T~~~~~~~~~-g~r~~~~~~ga~~~~~-~~l~-- 138 (306)
T 3bf5_A 65 VAQK-FRIPFDLYSAVGMK-THREYLAMIESMGINTGHVEKFEDESGPICYIATDG-KKQVSFMHQGAMAAWA-PQLA-- 138 (306)
T ss_dssp HHHH-TTCCCEEEEEEETT-TCHHHHHHHHHTTCCCTTEEEETTCCCSEEEEEECS-SCEEEEEECTHHHHCC-CCCC--
T ss_pred HHHH-cCCCeEEEEEEeCC-hHHHHHHHHHHcCCCchheEecCCCCCceEEEEEcC-CeeEEEEeCChhhhhh-Hhhc--
Confidence 9997 99999999999999 999999999999999999865544 79999999997 9999887777655555 4432
Q ss_pred ccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCC
Q 023557 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENA 246 (280)
Q Consensus 167 ~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~ 246 (280)
+++++||++... .+.++++.+++ ++++|++... .....+.+.++++ .+|++++|++|+..+++....+
T Consensus 139 --~~~~~v~~~~~~----~~~~~~~~a~~---~v~~D~~~~~-~~~~~~~~~~~l~--~~dil~~N~~E~~~l~g~~~~~ 206 (306)
T 3bf5_A 139 --DEYEYVHFSTGP----NYLDMAKSIRS---KIIFDPSQEI-HKYSKDELKKFHE--ISYMSIFNDHEYRVFREMTGLS 206 (306)
T ss_dssp --SCEEEEEECSSS----SHHHHHHHCCS---EEEECCGGGG-GGSCHHHHHHHHH--HCSEEEEEHHHHHHHHHHHCCS
T ss_pred --CCCCEEEECChH----HHHHHHHHhCC---cEEEcCchhh-hhccHHHHHHHHh--cCCEEEcCHHHHHHHhCCCCcC
Confidence 688999999432 45666666654 8999998531 1111345666777 8999999999999998742111
Q ss_pred cHHHHHHHHhcCCCEEEEEcCCCceEEEeCCc
Q 023557 247 DSEAALEFLAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 247 ~~~~~~~~l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
. + + . .++||+|++|++++++++
T Consensus 207 ~---~-~-----l-~vvvT~G~~Ga~~~~~~~ 228 (306)
T 3bf5_A 207 S---P-K-----V-TTIVTNGERGSSLFMDGK 228 (306)
T ss_dssp S---C-S-----S-CEEEEEGGGEEEEEETTE
T ss_pred c---c-c-----E-EEEEeecccCeEEEeCCc
Confidence 1 0 1 1 199999999999987654
No 43
>4e84_A D-beta-D-heptose 7-phosphate kinase; LPS-heptose biosynthesis, beta-clAsp dimerization region, PF carbohydrate kinase, phosphorylation; HET: MSE ANP M7B GMZ; 2.60A {Burkholderia cenocepacia} PDB: 4e8w_A* 4e8y_A* 4e8z_A*
Probab=99.96 E-value=2.6e-28 Score=216.14 Aligned_cols=229 Identities=18% Similarity=0.135 Sum_probs=165.3
Q ss_pred cCCCCeEEEecCCeeEeEEee--cChhHHHhC-CCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHH
Q 023557 12 ASQAALILGLQPAALIDHVAR--VDWSLLDQI-PGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRG 88 (280)
Q Consensus 12 ~~~~~~i~~iG~~~~vD~~~~--~~~~~l~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~ 88 (280)
.-+..+|+++| ..++|+++. + +++ |..+...... .+....+||+ +|+|++
T Consensus 50 ~~~~~~ilvvG-~~~~D~~~~g~v-----~r~~p~~p~~~~~~--------------------~~~~~~~GG~-~NvA~~ 102 (352)
T 4e84_A 50 QLARSRVLVVG-DVMLDRYWFGNV-----DRISPEAPVPVVHV--------------------QRQEERLGGA-ANVARN 102 (352)
T ss_dssp HHTTCEEEEEE-CEEEEEEEEEEE-----EEECSSSSSEEEEE--------------------EEEEEEEEEH-HHHHHH
T ss_pred hcCCCcEEEEC-ccceEEEEeecc-----cccCCCCCcceEEe--------------------eEEEEecChH-HHHHHH
Confidence 34567899999 999999987 4 333 1111111111 2578899998 799999
Q ss_pred HHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeec-CCcCCCCCcccCc--c
Q 023557 89 LSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPC-LSNAVKIQADELI--A 165 (280)
Q Consensus 89 la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~-~~~~~~~~~~~l~--~ 165 (280)
+++ ||.++.++|.+|+|.+|+.+++.|++.||++..+...+.+|+.+++++++++++..+.+ .+.......+.++ .
T Consensus 103 la~-LG~~v~~ig~vG~D~~G~~i~~~L~~~GV~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (352)
T 4e84_A 103 AVT-LGGQAGLLCVVGCDEPGERIVELLGSSGVTPHLERDPALPTTIKLRVLARQQQLLRVDFEAMPTHEVLLAGLARFD 181 (352)
T ss_dssp HHH-TTCEEEEEEEEESSHHHHHHHHHHTTTSCEEEEEEETTSCCCEEEEEEESSCEEEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHH-cCCCEEEEEEeCCChhHHHHHHHHHHcCCceeeEECCCCCCceEEEEEcCCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 997 99999999999999999999999999999995444444489999999986555443332 2222111111111 2
Q ss_pred cccCCCcEEEEE-ecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCC
Q 023557 166 EDVKGSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE 244 (280)
Q Consensus 166 ~~~~~~~~v~i~-~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~ 244 (280)
+.++++|+||++ +...+.+.+.++++.+++.|+++++|+++. ++++++ .+|++++|++|+..+++...
T Consensus 182 ~~l~~~~~v~~~g~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~---------~~~~l~--~~dil~pN~~Ea~~l~g~~~ 250 (352)
T 4e84_A 182 VLLPQHDVVLMSDYAKGGLTHVTTMIEKARAAGKAVLVDPKGD---------DWARYR--GASLITPNRAELREVVGQWK 250 (352)
T ss_dssp HHGGGCSEEEEECCSSSSCSSHHHHHHHHHHTTCEEEEECCSS---------CCSTTT--TCSEECCBHHHHHHHHCCCS
T ss_pred HhcccCCEEEEeCCCCCCHHHHHHHHHHHHhcCCEEEEECCCc---------chhhcc--CCcEEcCCHHHHHHHhCCCC
Confidence 467899999999 432233447888999999999999999752 134565 89999999999999998311
Q ss_pred -CCcHHHHHHHH-h-cCCCEEEEEcCCCceEEEeCCcc
Q 023557 245 -NADSEAALEFL-A-KRCQWAVVTLGPNGCIAKHGKEV 279 (280)
Q Consensus 245 -~~~~~~~~~~l-~-~~~~~vvvT~G~~Ga~~~~~~~~ 279 (280)
.+++.++++.+ . .+++.++||+|++|++++++++.
T Consensus 251 ~~~~~~~~a~~l~~~~g~~~VvvT~G~~Ga~~~~~~~~ 288 (352)
T 4e84_A 251 SEDDLRARVANLRAELDIDALLLTRSEEGMTLFSAGGE 288 (352)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEECGGGCEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEcCCCcEEEEECCce
Confidence 12344455544 3 48999999999999999987653
No 44
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1
Probab=99.96 E-value=3.2e-27 Score=205.29 Aligned_cols=219 Identities=18% Similarity=0.226 Sum_probs=167.9
Q ss_pred eEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCc
Q 023557 17 LILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVP 96 (280)
Q Consensus 17 ~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~ 96 (280)
||+++.+|+++|+++.+ +++ ..|+..... +....+||+++|+|+++++ ||.+
T Consensus 1 mi~tv~~n~~~D~~~~~-----~~~--~~g~~~~~~--------------------~~~~~~GG~~~N~A~~la~-LG~~ 52 (306)
T 2abq_A 1 MIYTVTLNPSIDYIVQV-----ENF--QQGVVNRSE--------------------RDRKQPGGKGINVSRVLKR-LGHE 52 (306)
T ss_dssp CEEEEESSCEEEEEEEC-----TTC--CSSSEEECS--------------------EEEEEEECHHHHHHHHHHH-TTCC
T ss_pred CEEEEecCchheEEEEc-----CCc--ccCCeEEec--------------------eeEecCCchHHHHHHHHHH-cCCC
Confidence 35666669999999999 554 466655532 5788999999999999997 9999
Q ss_pred EEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcc--cc---cCCC
Q 023557 97 CGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA--ED---VKGS 171 (280)
Q Consensus 97 ~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~--~~---~~~~ 171 (280)
+.++|.+|+ .+|+.+++.|++.||+++++...+ .|++++++ + +|+|+++...++ .+++++++. +. ++++
T Consensus 53 ~~~~~~vG~-~~g~~i~~~L~~~gv~~~~v~~~~-~t~~~~~~-~-~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~ 126 (306)
T 2abq_A 53 TKALGFLGG-FTGAYVRNALEKEEIGLSFIEVEG-DTRINVKI-K-GKQETELNGTAP--LIKKEHVQALLEQLTELEKG 126 (306)
T ss_dssp CEEEEEEEH-HHHHHHHHHHHHTTCEECCEEESS-CCEEEEEE-E-SSSCEEEBCCCC--CCCHHHHHHHHHHHTTCCTT
T ss_pred ceEEEEecc-hhHHHHHHHHHHcCCceEEEEcCC-CCceEEEE-e-CCceEEEECCCC--CCCHHHHHHHHHHHHhccCC
Confidence 999999998 799999999999999999988754 57887776 4 788876655443 456555432 11 5789
Q ss_pred cEEEEEecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC--C
Q 023557 172 KWLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN--A 246 (280)
Q Consensus 172 ~~v~i~~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~--~ 246 (280)
+++|++... .+.+.+.++++.+++.|.++++|+++. .+.+++++ .+|++++|++|+..+++.... +
T Consensus 127 ~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~--------~~~~~l~~-~~dil~~N~~E~~~l~g~~~~~~~ 197 (306)
T 2abq_A 127 DVLVLAGSVPQAMPQTIYRSMTQIAKERGAFVAVDTSGE--------ALHEVLAA-KPSFIKPNHHELSELVSKPIASIE 197 (306)
T ss_dssp CEEEEESCCCTTSCTTHHHHHHHHHHTTTCEEEEECCHH--------HHHHHGGG-CCSEECCBHHHHHHHHTSCCCSHH
T ss_pred CEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEEECChH--------HHHHHHhc-CCcEEecCHHHHHHHhCCCCCCHH
Confidence 999998221 245778889999999999999999742 23445542 689999999999999986421 2
Q ss_pred cHHHHHHH-HhcCCCEEEEEcCCCceEEEeCCc
Q 023557 247 DSEAALEF-LAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 247 ~~~~~~~~-l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++.++++. ++.+++.++||+|++|++++++++
T Consensus 198 ~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 230 (306)
T 2abq_A 198 DAIPHVQRLIGEGIESILVSFAGDGALFASAEG 230 (306)
T ss_dssp HHHHHHHHHHHTTCCEEEEECGGGCEEEEETTE
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCceEEEeCCC
Confidence 34444444 456889999999999999987654
No 45
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.95 E-value=8.6e-28 Score=207.82 Aligned_cols=196 Identities=16% Similarity=0.142 Sum_probs=144.5
Q ss_pred eecCchHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCC-CCceeEEEEEcCCCceeeeecCCc
Q 023557 76 TIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKR-GPTGQCVCLVDASGNRTMRPCLSN 154 (280)
Q Consensus 76 ~~~GG~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~-~~T~~~~~~~~~~g~r~~~~~~~~ 154 (280)
..+||+++|+|+++++ ||.++.++|.+|+|.+|+.+++.|++.|| +++.+.+ .+|+++++.++++|+|++..+.+.
T Consensus 21 ~~~GG~~~N~A~~la~-LG~~~~~~~~vG~D~~g~~~~~~l~~~gv--~~v~~~~~~~T~~~~v~~~~~g~~~~~~~~~~ 97 (296)
T 2qhp_A 21 KKIGGAPANFAYHVSQ-FGFDSRVVSAVGNDELGDEIMEVFKEKQL--KNQIERVDYPTGTVQVTLDDEGVPCYEIKEGV 97 (296)
T ss_dssp EEEECHHHHHHHHHHH-TTCEEEEEEEEESSHHHHHHHHHHHHTTC--CEEEEEESSCCEEEEEC------CCEEECSSC
T ss_pred CCCCCHHHHHHHHHHH-cCCCeeEEEEeCCChHHHHHHHHHHHcCC--CEEeecCCCCceEEEEEECCCCCEEEEEecCC
Confidence 5699999999999997 99999999999999999999999999999 6676653 489999998887888887665543
Q ss_pred -CCCCCcccCcccccCCCcEEEEEe-cCC---CHHHHHHHHHHHHH-CCCeEEEECCChHHHhhh-hhHHHhhccCCCce
Q 023557 155 -AVKIQADELIAEDVKGSKWLVLRF-GMF---NFEVIQAAIRIAKQ-EGLSVSMDLASFEMVRNF-RTPLLQLLESGDVD 227 (280)
Q Consensus 155 -~~~~~~~~l~~~~~~~~~~v~i~~-~~~---~~~~~~~~~~~a~~-~g~~v~~D~~~~~~~~~~-~~~l~~~l~~~~~d 227 (280)
...+++.+...+.++++|++|+++ ... +.+.+.++++.+++ .+.++++|+..... .+ .+.+.++++ .+|
T Consensus 98 ~~~~l~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~D~~~~~~--~~~~~~~~~~l~--~~d 173 (296)
T 2qhp_A 98 AWDNIPFTDELKRLALNTRAVCFGSLAQRNEVSRATINRFLDTMPDIDGQLKIFDINLRQD--FYTKEVLRESFK--RCN 173 (296)
T ss_dssp GGGCCCCCHHHHHHHHTEEEEEECSGGGSSHHHHHHHHHHHHHSCCTTSCEEEEECCCCTT--CCCHHHHHHHHH--HCS
T ss_pred hhhhCCcchhhHhhhcCCCEEEECChHhcChHHHHHHHHHHHHHHhcCCCEEEEECcCCcc--ccCHHHHHHHHH--HCC
Confidence 334443322235678899999983 211 34667778887776 68999999964310 11 234556676 899
Q ss_pred EEEcCHHHHHHHhcCC--CCCcHHHHHHHH-hc-CCCEEEEEcCCCceEEEeCCc
Q 023557 228 LCFANEDEAAELVRGE--ENADSEAALEFL-AK-RCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 228 il~~N~~E~~~l~~~~--~~~~~~~~~~~l-~~-~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++++|++|++.+++.. ..++++++++.+ ++ +++.++||+|++|++++++++
T Consensus 174 il~~N~~E~~~l~g~~~~~~~~~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~ 228 (296)
T 2qhp_A 174 ILKINDEELVTISRMFGYPGIDLQDKCWILLAKYNLKMLILTCGINGSYVFTPGV 228 (296)
T ss_dssp EEEEEHHHHHHHHHHTTCTTSCHHHHHHHHHHHTTCSEEEEECGGGCEEEEETTE
T ss_pred EEECCHHHHHHHhcccCCCCCCHHHHHHHHHHhcCCCEEEEeecCCCeEEEECCe
Confidence 9999999999998743 124566666654 44 889999999999999987654
No 46
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus}
Probab=99.95 E-value=1.2e-26 Score=201.51 Aligned_cols=218 Identities=18% Similarity=0.184 Sum_probs=166.1
Q ss_pred EEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCCcE
Q 023557 18 ILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGVPC 97 (280)
Q Consensus 18 i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~~~ 97 (280)
|+++.+|+++|+++.+ +++ ..|+..... +....+||+++|+|+++++ ||.++
T Consensus 2 i~tvt~n~~~D~~~~~-----~~~--~~g~~~~~~--------------------~~~~~~GG~~~N~A~~la~-LG~~~ 53 (306)
T 2jg5_A 2 IYTVTFNPSIDYVIFT-----NDF--KIDGLNRAT--------------------ATYKFAGGKGINVSRVLKT-LDVES 53 (306)
T ss_dssp EEEEESSCEEEEEEEC-----SSC--CTTSEEECS--------------------EEEEEEESHHHHHHHHHHH-TTCCC
T ss_pred EEEEecCceEEEEEEc-----CCc--ccCceEEec--------------------eeEecCCchHHHHHHHHHH-cCCCe
Confidence 5555559999999999 553 566655532 5788999999999999997 99999
Q ss_pred EEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcc--c-c--cCCCc
Q 023557 98 GLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA--E-D--VKGSK 172 (280)
Q Consensus 98 ~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~--~-~--~~~~~ 172 (280)
.++|.+|+ .+|+.+++.|++.||+++++...+ .|++++++ ++|+++++...++ .+++++++. + . ++++|
T Consensus 54 ~~~~~vG~-~~g~~i~~~l~~~gv~~~~v~~~~-~t~~~~~~--~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~ 127 (306)
T 2jg5_A 54 TALGFAGG-FPGKFIIDTLNNSAIQSNFIEVDE-DTRINVKL--KTGQETEINAPGP--HITSTQFEQLLQQIKNTTSED 127 (306)
T ss_dssp EEEEEECH-HHHHHHHHHHHHTTCEECCEECSS-CCEEEEEE--ESSSEEEEECCCC--CCCHHHHHHHHHHHTTCCTTC
T ss_pred eEEEEecC-cchHHHHHHHHHCCCceeEEEcCC-CCeEEEEE--cCCCEEEEECCCC--CCCHHHHHHHHHHHHhccCCC
Confidence 99999999 699999999999999999988754 57777766 4788877666554 355555432 1 1 57899
Q ss_pred EEEEEecC---CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCC--Cc
Q 023557 173 WLVLRFGM---FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEEN--AD 247 (280)
Q Consensus 173 ~v~i~~~~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~--~~ 247 (280)
++|++... .+.+.+.++++.+++.+.++++|+++. .+.+++++ .+|++++|++|+..+++.... ++
T Consensus 128 ~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~--------~~~~~l~~-~~dil~~N~~E~~~l~g~~~~~~~~ 198 (306)
T 2jg5_A 128 IVIVAGSVPSSIPSDAYAQIAQITAQTGAKLVVDAEKE--------LAESVLPY-HPLFIKPNKDELEVMFNTTVNSDAD 198 (306)
T ss_dssp EEEEESCCCTTSCTTHHHHHHHHHHHHCCEEEEECCHH--------HHHHHGGG-CCSEECCBHHHHHHHTTSCCCSHHH
T ss_pred EEEEeCCCCCCCChHHHHHHHHHHHHCCCEEEEECChH--------HHHHHHhc-CCeEEecCHHHHHHHhCCCCCCHHH
Confidence 99998321 235778888999999999999999743 23445541 489999999999999886422 13
Q ss_pred HHHHHHH-HhcCCCEEEEEcCCCceEEEeCCc
Q 023557 248 SEAALEF-LAKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 248 ~~~~~~~-l~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
+.++++. ++.+++.++||+|++|++++++++
T Consensus 199 ~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 230 (306)
T 2jg5_A 199 VIKYGRLLVDKGAQSVIVSLGGDGAIYIDKEI 230 (306)
T ss_dssp HHHHHHHHHHTTCSCEEEECGGGCEEEECSSE
T ss_pred HHHHHHHHHHcCCCEEEEccCCCceEEEeCCc
Confidence 3345544 456889999999999999987654
No 47
>3kd6_A Carbohydrate kinase, PFKB family; nucleoside kinase, AMP, PSI-II, NYSGXRC, struc genomics, protein structure initiative; HET: AMP; 1.88A {Chlorobaculum tepidum}
Probab=99.95 E-value=4.9e-26 Score=198.42 Aligned_cols=212 Identities=17% Similarity=0.202 Sum_probs=161.4
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~ 95 (280)
++|+++| ++++|++... .| +....+||+++|+|+++++ ||.
T Consensus 3 ~~ilviG-~~~iD~~~~~-----------~~--------------------------~~~~~~GG~~~NvA~~la~-LG~ 43 (313)
T 3kd6_A 3 LSLLVIG-SLAFDDIETP-----------FG--------------------------RSDNTLGGSSTYIALSASY-FTD 43 (313)
T ss_dssp CCEEEES-CCEEEEEECS-----------SC--------------------------EEEEEEECHHHHHHHHHTT-TCS
T ss_pred ccEEEEe-EEEEeeecCC-----------CC--------------------------cccccCCCHHHHHHHHHHH-hCC
Confidence 4799999 9999999542 11 3578899999999999997 999
Q ss_pred -cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCC-CceeEEEE--EcCCCceeeeecCCcCCCCCcccCcccccCCC
Q 023557 96 -PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRG-PTGQCVCL--VDASGNRTMRPCLSNAVKIQADELIAEDVKGS 171 (280)
Q Consensus 96 -~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~-~T~~~~~~--~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (280)
++.++|.+|+| +|+.+++.|+++||+++++.+.++ +|....-. .+.++++++....+....+.+. + .+.++++
T Consensus 44 ~~~~~ig~vG~D-~g~~~~~~L~~~gVd~~~v~~~~~~~T~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~ 120 (313)
T 3kd6_A 44 EPIRMVGVVGSD-FGKEHFDLLHAKNIDTRGIQVIEDGKTFRWAGRYHYDMNTRDTLDTQLNVFAEFDPH-V-PQYYRDS 120 (313)
T ss_dssp SCEEEEEEEETT-SCHHHHHHHHHTTEEEEEEEEETTCCCEEEEEEECTTSSCEEEEEEECGGGTTCCCC-C-CGGGTTC
T ss_pred CceEEEEecCCC-cHHHHHHHHHHcCCCccceEEcCCCCeeeeeeeeeccccccceeecccchHhhcCcc-c-hHHHccC
Confidence 99999999999 999999999999999999987653 56432211 2234555655555544444442 2 3567899
Q ss_pred cEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHHHH
Q 023557 172 KWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSEAA 251 (280)
Q Consensus 172 ~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~~~ 251 (280)
|++|++. ++++...++++.+ +.+.++++|+.... .....+.+.++++ .+|++++|++|++.+++. +++.++
T Consensus 121 ~~v~~~~--~~~~~~~~~~~~~-~~~~~v~~Dp~~~~-~~~~~~~~~~~l~--~~dil~~N~~E~~~l~g~---~~~~~~ 191 (313)
T 3kd6_A 121 KFVCLGN--IDPELQLKVLDQI-DDPKLVVCDTMNFW-IEGKPEELKKVLA--RVDVFIVNDSEARLLSGD---PNLVKT 191 (313)
T ss_dssp SEEEECS--SCHHHHHHHHTTC-SSCSEEEEECCHHH-HHHCHHHHHHHHT--TCSEEEEEHHHHHHHHSC---SCHHHH
T ss_pred CEEEEcC--CCHHHHHHHHHHH-hhCCEEEEcChhhh-hhhhHHHHHHHHh--cCCEEEeCHHHHHHHhCC---CCHHHH
Confidence 9999974 3566667777766 56889999995321 1234556777887 899999999999999985 467777
Q ss_pred HHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 252 LEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 252 ~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
++.+ +.+++.++||+|++|++++++++
T Consensus 192 ~~~l~~~g~~~vvvt~G~~G~~~~~~~~ 219 (313)
T 3kd6_A 192 ARIIREMGPKTLIIKKGEHGALLFTDNG 219 (313)
T ss_dssp HHHHHTTSCSEEEEECTTSCEEEEETTE
T ss_pred HHHHHHcCCCEEEEeeCCCcEEEEECCc
Confidence 6655 45889999999999999998765
No 48
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1
Probab=99.95 E-value=3.7e-26 Score=202.29 Aligned_cols=202 Identities=15% Similarity=0.218 Sum_probs=152.4
Q ss_pred CceeecCchHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCce-eeeec
Q 023557 73 PIKTIAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNR-TMRPC 151 (280)
Q Consensus 73 ~~~~~~GG~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r-~~~~~ 151 (280)
+....+||+++|+|+++++ ||.++.++|.+|+|.+|+.+++.|++.||+++++...+.+|+++++.++. ++| +++.+
T Consensus 38 ~~~~~~GG~~~NvA~~la~-LG~~~~~i~~vG~D~~G~~i~~~L~~~gv~~~~v~~~~~~t~~~~v~~~~-~~r~~~v~~ 115 (351)
T 2afb_A 38 SFDVTYGGAEANVAAFLAQ-MGLDAYFVTKLPNNPLGDAAAGHLRKFGVKTDYIARGGNRIGIYFLEIGA-SQRPSKVVY 115 (351)
T ss_dssp EEEEEEECHHHHHHHHHHH-TTSEEEEEEEECSSHHHHHHHHHHHHTTCBCTTEEECSSCCCEEEEECCB-TTBCCEEEE
T ss_pred eeeEecCChHHHHHHHHHH-cCCCeEEEEEeCCCHHHHHHHHHHHHcCCcceeEEECCCcceEEEEEecC-CCCcceEEE
Confidence 5788999999999999997 99999999999999999999999999999999988754578888887664 444 44433
Q ss_pred C---CcCCCCCcccCcc-cccCCCcEEEEE-ecC-CC---HHHHHHHHHHHHHCCCeEEEECCChHHH---hhhhhHHHh
Q 023557 152 L---SNAVKIQADELIA-EDVKGSKWLVLR-FGM-FN---FEVIQAAIRIAKQEGLSVSMDLASFEMV---RNFRTPLLQ 219 (280)
Q Consensus 152 ~---~~~~~~~~~~l~~-~~~~~~~~v~i~-~~~-~~---~~~~~~~~~~a~~~g~~v~~D~~~~~~~---~~~~~~l~~ 219 (280)
. .+...++++++.. ..++++++||++ +.. .+ .+.+.++++.+++.++++++|++..... ...++.+.+
T Consensus 116 ~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~ 195 (351)
T 2afb_A 116 DRAHSAISEAKREDFDWEKILDGARWFHFSGITPPLGKELPLILEDALKVANEKGVTVSCDLNYRARLWTKEEAQKVMIP 195 (351)
T ss_dssp ECTTCTTTTCCGGGCCHHHHTTTEEEEEEETTSGGGSTTHHHHHHHHHHHHHHHTCEEEEECCCCTTTCCHHHHHHHHHH
T ss_pred eCCCChhhhCChhhCCHHHhhcCCCEEEEeCcccccChhHHHHHHHHHHHHHHcCCEEEEeCCCchhcCChHHHHHHHHH
Confidence 2 2334566666654 346899999999 321 12 4778889999999999999999842100 123355667
Q ss_pred hccCCCceEEEcCHHHHHHHhcCCCC-----------CcHHHHHHHH-hc-CCCEEEEEcCCCce--------EEEeCCc
Q 023557 220 LLESGDVDLCFANEDEAAELVRGEEN-----------ADSEAALEFL-AK-RCQWAVVTLGPNGC--------IAKHGKE 278 (280)
Q Consensus 220 ~l~~~~~dil~~N~~E~~~l~~~~~~-----------~~~~~~~~~l-~~-~~~~vvvT~G~~Ga--------~~~~~~~ 278 (280)
+++ .+|++++|++|+..+++.... +++.++++.+ .+ +++.++||+|++|+ +++++++
T Consensus 196 ll~--~~dil~~N~~E~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~vvvT~G~~G~~~~~~~g~~~~~~~~ 273 (351)
T 2afb_A 196 FME--YVDVLIANEEDIEKVLGISVEGLDLKTGKLNREAYAKIAEEVTRKYNFKTVGITLRESISATVNYWSVMVFENGQ 273 (351)
T ss_dssp HGG--GCSEEEECHHHHHHHHCCCCSCC-------CHHHHHHHHHHHHHHHCCSEEEEEEEECSCSSEEEEEEEEEETTE
T ss_pred HHh--hCCEEEecHHHHHHHhCCCcccccccccccchhhHHHHHHHHHHHcCCCEEEEEeCCcCccccccceeEEEeCCc
Confidence 787 899999999999999986421 1244555544 44 89999999999985 6666543
No 49
>4gm6_A PFKB family carbohydrate kinase; enzyme function initiative, transferase; 2.00A {Listeria grayi dsm 20601}
Probab=99.93 E-value=7.7e-25 Score=193.76 Aligned_cols=193 Identities=19% Similarity=0.244 Sum_probs=143.3
Q ss_pred CeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcCC
Q 023557 16 ALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV 95 (280)
Q Consensus 16 ~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~ 95 (280)
.+|++|| .+++|+.-.- ..| +.+..++...+||+++|+|++|++ ||.
T Consensus 25 ~kv~~~G-E~m~~l~p~~------~~~-------------------------~~~~~~~~~~~GG~~aNvA~~lar-LG~ 71 (351)
T 4gm6_A 25 KQVVTIG-ELLMRLSTQQ------GIP-------------------------FSQTTALDIHIGGAEANVAVNLSK-LGH 71 (351)
T ss_dssp CEEEEEC-CCEEEEECCT------TCC-------------------------GGGCSEEEEEEECHHHHHHHHHHH-TTC
T ss_pred CCEEEEc-ceeEEecCCC------CCC-------------------------ccccCeEEEecCChHHHHHHHHHH-cCC
Confidence 3799999 9999975332 111 112236789999999999999997 999
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEE-cCCCceeeeecCCcC--CCCCcccCc-ccccCCC
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLV-DASGNRTMRPCLSNA--VKIQADELI-AEDVKGS 171 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~-~~~g~r~~~~~~~~~--~~~~~~~l~-~~~~~~~ 171 (280)
++.++|.+|+|.+|+++++.|+++||+++++...+.+++.+++.. +..+++.+..+.... ......++. .+.++++
T Consensus 72 ~~~~ig~vG~D~~G~~l~~~L~~~GVdt~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~d~~~~~~~~~~ 151 (351)
T 4gm6_A 72 PTRIATVVPANPIGKMAVEHLWRHQVDTAFVVEAGDRLGTYYLESGTALKAPSVVYDRQHSSFARHKSMDWDLSELLKGI 151 (351)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHTTEECTTEEECSSCCCEEEEECCBTTBCCEEEEECTTCHHHHCCCCCCCHHHHHTTE
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHcCCCcccccccCCccceeEEEEccCCcceEEEEccccchhhhCCccccCHHHHHhhc
Confidence 999999999999999999999999999999988776555554443 444555555443322 223333333 3578999
Q ss_pred cEEEEE-ecC----CCHHHHHHHHHHHHHCCCeEEEECCChHH---HhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCC
Q 023557 172 KWLVLR-FGM----FNFEVIQAAIRIAKQEGLSVSMDLASFEM---VRNFRTPLLQLLESGDVDLCFANEDEAAELVRGE 243 (280)
Q Consensus 172 ~~v~i~-~~~----~~~~~~~~~~~~a~~~g~~v~~D~~~~~~---~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~ 243 (280)
+++|++ ..+ ...+.+.++++.+++.|++|+||++.+.. .+..++.+.++++ .+|++++|++|+..+++..
T Consensus 152 ~~~~~~g~~l~~~~~~~~~~~~~~~~ak~~g~~v~~D~n~r~~lw~~~~~~~~~~~~l~--~~dil~~N~~Ea~~l~g~~ 229 (351)
T 4gm6_A 152 RVLHVSGITIALSTFWLEMVVKIIREAKRNGIKISFDMNYRAKLWELEAAKRAYQQLLP--LVDYCSAGQMDAVAFFEIS 229 (351)
T ss_dssp EEEEEEHHHHHHCHHHHHHHHHHHHHHHHTTCEEEEECCCCTTTSCHHHHHHHHHHHGG--GCSEEECCHHHHHHTSCCC
T ss_pred ccceecccchhhchhHHHHHHHHHHHHHHcCCCcccCCCcCchhhhhhhHHHHHHHHHH--hCCccccCHHHHHHHhCCC
Confidence 999999 221 13577889999999999999999974321 1223455677787 8999999999999998864
No 50
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Probab=99.91 E-value=1.7e-24 Score=187.36 Aligned_cols=208 Identities=17% Similarity=0.081 Sum_probs=154.4
Q ss_pred CCeEEEecCCeeEeEEeecChhHHHhCCCCCCcceeeCHHHHHHHHHhccccCCCCCCCceeecCchHHHHHHHHHhhcC
Q 023557 15 AALILGLQPAALIDHVARVDWSLLDQIPGERGGSIPVAIEELEHILSEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFG 94 (280)
Q Consensus 15 ~~~i~~iG~~~~vD~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG 94 (280)
--+|+++| .+..|.+.+. .+....+||+++|+|+++++ ||
T Consensus 11 ~~~~~~~~-~~~~~~~~~~--------------------------------------~~~~~~~GG~~~NvA~~la~-LG 50 (298)
T 1vk4_A 11 HHMITFIG-HVSKDVNVVD--------------------------------------GKREIAYGGGVVMGAITSSL-LG 50 (298)
T ss_dssp CSEEEEEC-CCEEEEEEET--------------------------------------TEEEEEEECHHHHHHHHHHH-TT
T ss_pred ceeEEEec-cccCceEeec--------------------------------------CeEEEecCCHHHHHHHHHHH-cC
Confidence 45789998 8999988887 14668899999999999997 99
Q ss_pred CcEEEEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEE
Q 023557 95 VPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174 (280)
Q Consensus 95 ~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v 174 (280)
.++.++|.+|+|. +.+++.|++.||+++++.. +.+|+.+.++ +++|+++++.+.++...+++++++. .+++++
T Consensus 51 ~~~~~i~~vG~D~--~~~~~~L~~~gVd~~~v~~-~~~t~~~~i~-~~~g~~~~~~~~~~~~~l~~~~~~~---~~~~~v 123 (298)
T 1vk4_A 51 VKTKVITKCTRED--VSKFSFLRDNGVEVVFLKS-PRTTSIENRY-GSDPDTRESFLISAADPFTESDLAF---IEGEAV 123 (298)
T ss_dssp CEEEEEEEECTTT--GGGGTTTGGGTCEEEEEEC-SSCEEEEEEC------CCEEEEEECCCCCCGGGGGG---CCSSEE
T ss_pred CceEEEEEEcCCH--HHHHHHHHHcCCceEEEec-CCCcEEEEEE-cCCCCeeEEEeccccccCCHHHcCc---CCCCEE
Confidence 9999999999997 7888999999999998765 3456666665 5568887776666666677666543 678999
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHH-------HhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCc
Q 023557 175 VLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEM-------VRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENAD 247 (280)
Q Consensus 175 ~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~-------~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~ 247 (280)
|++... ..+...++++.+++.|.++++|+++... .....+.+.++++ .+|++++|++|+..+++. .+
T Consensus 124 ~~~~~~-~~~~~~~~~~~~~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~l~--~~dil~~N~~E~~~l~g~---~~ 197 (298)
T 1vk4_A 124 HINPLW-YGEFPEDLIPVLRRKVMFLSADAQGFVRVPENEKLVYRDWEMKEKYLK--YLDLFKVDSREAETLTGT---ND 197 (298)
T ss_dssp EECCSS-TTSSCGGGHHHHHHHCSEEEEETHHHHEEEETTEEEECCCTTHHHHGG--GCSEEEEEHHHHHHHHSC---SC
T ss_pred EECCcc-cccccHHHHHHHHHcCCEEEEecCccccccccccccccchHHHHhhcc--cCCEEecCHHHHHHHhCC---CC
Confidence 998321 1223345677777889999999974210 0001124556777 899999999999999985 35
Q ss_pred HHHHHHHH-hcCCCEEEEEcCCCceEEEeC
Q 023557 248 SEAALEFL-AKRCQWAVVTLGPNGCIAKHG 276 (280)
Q Consensus 248 ~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~ 276 (280)
+.++++.+ +.+++.++||+ ++|++++++
T Consensus 198 ~~~~~~~l~~~g~~~vvvT~-~~G~~~~~~ 226 (298)
T 1vk4_A 198 LRESCRIIRSFGAKIILATH-ASGVIVFDG 226 (298)
T ss_dssp HHHHHHHHHHTTCSSEEEEE-TTEEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEEc-CCCcEEEeC
Confidence 66666654 56889999999 999998865
No 51
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A*
Probab=99.28 E-value=4.8e-12 Score=109.73 Aligned_cols=157 Identities=13% Similarity=0.131 Sum_probs=103.5
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCccceeeeC--CCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcc--cc----
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRMK--RGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA--ED---- 167 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~--~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~--~~---- 167 (280)
.+.++|.+|+|. |+.+ |++.||+++++.+. .++|++++ ..+ ..++++++.. +.
T Consensus 12 ~~~~~g~vG~D~-g~~i---L~~~GV~~~~v~~~~~~~~t~~~~-------------~~g--~~l~~~~i~~~~~~~~~~ 72 (312)
T 2yxt_A 12 SHVIRGYVGNRA-ATFP---LQVLGFEIDAVNSVQFSNHTGYAH-------------WKG--QVLNSDELQELYEGLRLN 72 (312)
T ss_dssp EEESSSCSTHHH-HHHH---HHHTTCEEEEEEEEEESSCTTSSC-------------CCE--EECCHHHHHHHHHHHHHT
T ss_pred cccCCCccchHh-hHHH---HHHcCCeEEEEEEEEecCCCCcCC-------------ccC--ccCCHHHHHHHHHHHHhc
Confidence 567899999998 9999 99999999887653 22333221 111 2344444431 11
Q ss_pred -cCCCcEEEEEecCCC---HHHHHHHHHHHHHCCCe--EEEECCChHH---------HhhhhhHHHh-hccCCCceEEEc
Q 023557 168 -VKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLS--VSMDLASFEM---------VRNFRTPLLQ-LLESGDVDLCFA 231 (280)
Q Consensus 168 -~~~~~~v~i~~~~~~---~~~~~~~~~~a~~~g~~--v~~D~~~~~~---------~~~~~~~l~~-~l~~~~~dil~~ 231 (280)
+++++++++.+.. + .+.+.++++.+++.|.+ +++||..... .+.+.+.+.+ +++ .+|++++
T Consensus 73 ~~~~~~~v~~G~~~-~~~~~~~~~~~~~~a~~~g~~~~vv~Dp~~~~~~~~sg~~~~~~~~~~~l~~~ll~--~~dil~p 149 (312)
T 2yxt_A 73 NMNKYDYVLTGYTR-DKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYVPEDLLPVYKEKVVP--LADIITP 149 (312)
T ss_dssp TCCCCSEEEECCCC-CHHHHHHHHHHHHHHHHHCTTCEEEECCCCEEC--CCCEESSCTTHHHHHHHTTGG--GCSEECC
T ss_pred CCccCCEEEECCCC-CHHHHHHHHHHHHHHHhhCCCCeEEECCCcCCCCCCCCCeeCCHHHHHHHHHHhhh--hCCEEcC
Confidence 6789998876432 4 45556888888888764 8899864311 0123334554 676 8999999
Q ss_pred CHHHHHHHhcCCCC--CcHHHHHHH-HhcCCCEEEEEcCCCc------eEEE
Q 023557 232 NEDEAAELVRGEEN--ADSEAALEF-LAKRCQWAVVTLGPNG------CIAK 274 (280)
Q Consensus 232 N~~E~~~l~~~~~~--~~~~~~~~~-l~~~~~~vvvT~G~~G------a~~~ 274 (280)
|++|+..|++.... +++.++++. ++.+++.|+||+|+.| ++++
T Consensus 150 N~~Ea~~L~g~~~~~~~~~~~~~~~l~~~g~~~VvvT~G~~g~~~~~G~~~~ 201 (312)
T 2yxt_A 150 NQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSDLPSPQGSNYLIV 201 (312)
T ss_dssp CHHHHHHHHSCCCCSHHHHHHHHHHHHHHSCSEEEECCCSCCCTTCTTEEEE
T ss_pred CHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCCCceEEE
Confidence 99999999986422 234455554 4568999999988864 7765
No 52
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Probab=99.15 E-value=7.9e-11 Score=100.58 Aligned_cols=167 Identities=14% Similarity=0.148 Sum_probs=104.8
Q ss_pred cCCcEEE-EEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcc------
Q 023557 93 FGVPCGL-IGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIA------ 165 (280)
Q Consensus 93 lG~~~~~-~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~------ 165 (280)
|+..... +|.+|.|. .++.|++.||++.++.+ + ++.+..|.+.+ .+ ..++++++..
T Consensus 19 L~i~~~~~~g~~G~d~----~~~~l~~~Gv~~~~v~t-------~-i~~~~~g~~~~---~g--~~~~~~~~~~~~~~l~ 81 (283)
T 2ddm_A 19 VAVQSQVVYGSVGNSI----AVPAIKQNGLNVFAVPT-------V-LLSNTPHYDTF---YG--GAIPDEWFSGYLRALQ 81 (283)
T ss_dssp EEEEEEESSSSSTHHH----HHHHHHHTTCCEEEEEE-------E-EESSCTTSSCC---CE--EECCHHHHHHHHHHHH
T ss_pred EEEecccCCCcchHHH----HHHHHHHcCCeeeEEeE-------E-EeccCCCcCce---ee--eeCCHHHHHHHHHHHH
Confidence 7777555 88889873 45688889999987743 1 22243454442 11 2233333321
Q ss_pred c--ccCCCcEEEEEecCC--CHHHHHHHHHHHHH--CCCeEEEECCChHH------HhhhhhHH-HhhccCCCceEEEcC
Q 023557 166 E--DVKGSKWLVLRFGMF--NFEVIQAAIRIAKQ--EGLSVSMDLASFEM------VRNFRTPL-LQLLESGDVDLCFAN 232 (280)
Q Consensus 166 ~--~~~~~~~v~i~~~~~--~~~~~~~~~~~a~~--~g~~v~~D~~~~~~------~~~~~~~l-~~~l~~~~~dil~~N 232 (280)
+ .++++++|++++... ..+.+.++++.+++ .++++++||..... .+...+.+ .++++ .+|++++|
T Consensus 82 ~~~~~~~~~~v~~G~l~~~~~~~~~~~~l~~a~~~~~g~~vv~Dp~~~~~~~~~~~~~~~~~~~~~~ll~--~~dil~pN 159 (283)
T 2ddm_A 82 ERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLP--LAQGITPN 159 (283)
T ss_dssp HTTCCTTCCEEEECCCSCHHHHHHHHHHHHHHHTTCTTCEEEECCCCEETTTEECSCTTHHHHHHHTTGG--GCSEECCB
T ss_pred hcCCcccCCEEEECCcCCHHHHHHHHHHHHHHHhcCCCCeEEECCcccCCCCCcccCHHHHHHHHHhhhh--hceEecCC
Confidence 1 456889999984211 24667788888877 78999999864310 00111223 24666 89999999
Q ss_pred HHHHHHHhcCCCC--CcHHHHHHHH-hcCCCEEEEEcCCC-------ceEEEeCCc
Q 023557 233 EDEAAELVRGEEN--ADSEAALEFL-AKRCQWAVVTLGPN-------GCIAKHGKE 278 (280)
Q Consensus 233 ~~E~~~l~~~~~~--~~~~~~~~~l-~~~~~~vvvT~G~~-------Ga~~~~~~~ 278 (280)
+.|++.|++.... ++..++++.+ +.+++.|+||+|++ |++++++++
T Consensus 160 ~~E~~~L~g~~~~~~~~~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~G~~~~~~~~ 215 (283)
T 2ddm_A 160 IFELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVVTSASGNEENQEMQVVVVTADS 215 (283)
T ss_dssp HHHHHHHHTSCCSSHHHHHHHHHHHCCSSCCEEEEEC-------CEEEEEEEETTE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEccccCccCCCceeEEEEeCCc
Confidence 9999999986422 2344555555 45789999999999 899887654
No 53
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=98.89 E-value=1.7e-09 Score=92.63 Aligned_cols=105 Identities=17% Similarity=0.097 Sum_probs=70.8
Q ss_pred CcEEEEEecCCCHHHHHHHHHHHHHCCCe-EEEECCChHHH------hhhhhHHHh-hccCCCceEEEcCHHHHHHHhcC
Q 023557 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLS-VSMDLASFEMV------RNFRTPLLQ-LLESGDVDLCFANEDEAAELVRG 242 (280)
Q Consensus 171 ~~~v~i~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~~~------~~~~~~l~~-~l~~~~~dil~~N~~E~~~l~~~ 242 (280)
++++++.+. .+.+.+..+++.+++.+.+ +++||...... +...+.+.+ +++ .+|+++||+.|+..|++.
T Consensus 95 ~~~v~~G~l-~~~~~~~~~~~~~~~~~~~~vvlDp~~~~~~g~~l~~~~~~~~l~~~ll~--~~dil~pN~~Ea~~L~g~ 171 (288)
T 1jxh_A 95 IDTTKIGML-AETDIVEAVAERLQRHHVRNVVLDTVMLAKSGDPLLSPSAIETLRVRLLP--QVSLITPNLPEAAALLDA 171 (288)
T ss_dssp CSEEEECCC-CSHHHHHHHHHHHHHTTCCSEEEECCCC------CCCHHHHHHHHHHTGG--GCSEEECBHHHHHHHHTC
T ss_pred CCEEEECCC-CCHHHHHHHHHHHHHCCCCeEEEcCcccCCCCCccCCHHHHHHHHHHHHh--hCcEEcCCHHHHHHHcCC
Confidence 788887753 3678888999999999986 99998653100 011123443 566 899999999999999986
Q ss_pred -CCC--CcHHHHHHH-HhcCCCEEEEEcCCCc-----eEEEeCCc
Q 023557 243 -EEN--ADSEAALEF-LAKRCQWAVVTLGPNG-----CIAKHGKE 278 (280)
Q Consensus 243 -~~~--~~~~~~~~~-l~~~~~~vvvT~G~~G-----a~~~~~~~ 278 (280)
... ++..++++. ++.+++.|+||.|++| ++++++++
T Consensus 172 ~~~~~~~~~~~~a~~l~~~g~~~Vvvt~G~~G~~~~~~~~~~~~~ 216 (288)
T 1jxh_A 172 PHARTEQEMLAQGRALLAMGCEAVLMKGGHLEDAQSPDWLFTREG 216 (288)
T ss_dssp CCCCSHHHHHHHHHHHHHTTCSEEEEBC---------CEEECSSC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEEEeccCCCCCceeEEEEECCe
Confidence 322 234444444 4568899999999999 88887654
No 54
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2
Probab=98.60 E-value=2.4e-07 Score=77.63 Aligned_cols=106 Identities=16% Similarity=0.074 Sum_probs=72.0
Q ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHCC-CeEEEECCChHH-----H-hhhhhHH-HhhccCCCceEEEcCHHHHHHHhc
Q 023557 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEG-LSVSMDLASFEM-----V-RNFRTPL-LQLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~~~~~~~~a~~~g-~~v~~D~~~~~~-----~-~~~~~~l-~~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
+.+++++.+. .+.+.+..+++.+++.+ +++++|+..... . +...+.+ .++++ .+|+++||+.|+..|++
T Consensus 70 ~~~~v~~G~l-~~~~~~~~~~~~~~~~~~~~vv~Dp~~~~~~g~~l~~~~~~~~~~~~ll~--~~dil~pN~~E~~~L~g 146 (258)
T 1ub0_A 70 PLHAAKTGAL-GDAAIVEAVAEAVRRFGVRPLVVDPVMVAKSGDPLLAKEAAAALKERLFP--LADLVTPNRLEAEALLG 146 (258)
T ss_dssp CCSEEEECCC-CSHHHHHHHHHHHHHTTCCSEEECCCC---------CHHHHHHHHHHTGG--GCSEECCBHHHHHHHHC
T ss_pred CCCEEEECCc-CCHHHHHHHHHHHHhCCCCcEEECCeeecCCCCcccChHHHHHHHHhhcc--cCeEEeCCHHHHHHHhC
Confidence 4678777753 36677888888888888 899999964310 0 0111234 24666 89999999999999998
Q ss_pred CCCC--CcHHHHHHHH-hcCCCEEEEEcCCC-c----eEEEeCCc
Q 023557 242 GEEN--ADSEAALEFL-AKRCQWAVVTLGPN-G----CIAKHGKE 278 (280)
Q Consensus 242 ~~~~--~~~~~~~~~l-~~~~~~vvvT~G~~-G----a~~~~~~~ 278 (280)
.... ++..++++.+ +.+++.++||+|++ | ++++++++
T Consensus 147 ~~~~~~~~~~~~a~~l~~~g~~~vvvt~g~~~G~~~~~~~~~~~~ 191 (258)
T 1ub0_A 147 RPIRTLKEAEEAAKALLALGPKAVLLKGGHLEGEEAVDLLATRGG 191 (258)
T ss_dssp SCCCSHHHHHHHHHHHHTTSCSCEEEEEEECC---EEEEEEETTE
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCCCceEEEEEeCCe
Confidence 6432 2344455544 45788999999998 9 77776654
No 55
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis}
Probab=98.53 E-value=5.8e-07 Score=75.92 Aligned_cols=106 Identities=21% Similarity=0.155 Sum_probs=73.9
Q ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHCCC-eEEEECCChHH------HhhhhhHHH-hhccCCCceEEEcCHHHHHHHhc
Q 023557 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGL-SVSMDLASFEM------VRNFRTPLL-QLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~~~~~~~~a~~~g~-~v~~D~~~~~~------~~~~~~~l~-~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
++|++++.+. .+.+....+++.+++.+. ++++||..... .+...+.+. ++++ .+|+++||..|+..|++
T Consensus 74 ~~d~v~~G~l-~~~~~~~~~~~~~~~~~~~~vv~Dp~~~~~~~~~~~~~~~~~~l~~~ll~--~~diltpN~~E~~~L~g 150 (271)
T 2i5b_A 74 GVDAMKTGML-PTVDIIELAAKTIKEKQLKNVVIDPVMVCKGANEVLYPEHAQALREQLAP--LATVITPNLFEASQLSG 150 (271)
T ss_dssp CCSEEEECCC-CSHHHHHHHHHHHHHTTCSSEEECCCCSSBCSSSBSSHHHHHHHHHHTGG--GCSEECCBHHHHHHHHT
T ss_pred CCCEEEECCC-CCHHHHHHHHHHHHhCCCCCEEEcCCcCCCCCCcCcCHHHHHHHHHHhHh--hCcEEcCCHHHHHHHhC
Confidence 6788888752 357788888888998888 59999853210 011223444 5666 89999999999999998
Q ss_pred CC-CCC--cHHHHHHHH-hcCCCEEEEEcCC--Cce----EEEeCCc
Q 023557 242 GE-ENA--DSEAALEFL-AKRCQWAVVTLGP--NGC----IAKHGKE 278 (280)
Q Consensus 242 ~~-~~~--~~~~~~~~l-~~~~~~vvvT~G~--~Ga----~~~~~~~ 278 (280)
.. ..+ +..++++.+ +.+.+.|+||.|. +|+ +++++++
T Consensus 151 ~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~~~g~~~~~~~~~~~~ 197 (271)
T 2i5b_A 151 MDELKTVDDMIEAAKKIHALGAQYVVITGGGKLKHEKAVDVLYDGET 197 (271)
T ss_dssp CCCCCSHHHHHHHHHHHHTTTCSEEEEECGGGSCSSSEEEEEECSSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCceEEEEEeCCe
Confidence 64 221 344455544 4578999999999 895 6666543
No 56
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=98.37 E-value=8.7e-07 Score=76.09 Aligned_cols=99 Identities=12% Similarity=0.076 Sum_probs=65.3
Q ss_pred CCCcEEEEEecCCC---HHHHHHHHHHHHHCC------CeEEEECCCh-----HHHhhhhhHHHhhccCCCceEEEcCHH
Q 023557 169 KGSKWLVLRFGMFN---FEVIQAAIRIAKQEG------LSVSMDLASF-----EMVRNFRTPLLQLLESGDVDLCFANED 234 (280)
Q Consensus 169 ~~~~~v~i~~~~~~---~~~~~~~~~~a~~~g------~~v~~D~~~~-----~~~~~~~~~l~~~l~~~~~dil~~N~~ 234 (280)
.++|+|...+.. + .+.+.++++..++.+ .++++||.-. ...+...+.+.++++ .+|+++||..
T Consensus 75 ~~~daV~tG~l~-s~~~i~~v~~~l~~~k~~~~~~~~~~~vv~DPVm~d~G~~~~~~~~~~~~~~Ll~--~adiitPN~~ 151 (300)
T 3zs7_A 75 SNYRYILTGYIN-NVDIIGRIRDTLKEVRELREKEDKKLTFICDPVMGDDGIMYCKKEVLDAYRELVP--LADIVTPNYF 151 (300)
T ss_dssp GGCSEEEECCCC-CHHHHHHHHHHHHHHHHHHHHTTCCCEEEECCCC---------CTHHHHHHHHGG--GCSEECCCHH
T ss_pred ccCCEEEECCCC-CHHHHHHHHHHHHHHHhhCcCcCCCceEEEccccccCCCeecCHHHHHHHHHHhh--hCCEecCCHH
Confidence 568888777542 3 345566666666554 7899999311 111223445566777 8999999999
Q ss_pred HHHHHhcCCCC--CcHHHHHHHH-hcCCCEEEEEcCCCc
Q 023557 235 EAAELVRGEEN--ADSEAALEFL-AKRCQWAVVTLGPNG 270 (280)
Q Consensus 235 E~~~l~~~~~~--~~~~~~~~~l-~~~~~~vvvT~G~~G 270 (280)
|++.|+|.... ++..++++.| +.+++.|+||.|..|
T Consensus 152 Ea~~L~g~~~~~~~~~~~aa~~L~~~G~~~Vvvt~g~~g 190 (300)
T 3zs7_A 152 EASLLSGVTVNDLSSAILAADWFHNCGVAHVIIKSFREQ 190 (300)
T ss_dssp HHHHHHSSCCCSHHHHHHHHHHHHHHTCSEEEEEEEC--
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhCCCEEEEecCcCC
Confidence 99999987532 2344455544 568999999999998
No 57
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=98.33 E-value=1.2e-06 Score=74.88 Aligned_cols=109 Identities=15% Similarity=0.013 Sum_probs=71.1
Q ss_pred cCCCcEEEEEecC--CCHHHHHHHHHHHHHCC--CeEEEECCChH------HHhhhhhHHHh-hccCCCceEEEcCHHHH
Q 023557 168 VKGSKWLVLRFGM--FNFEVIQAAIRIAKQEG--LSVSMDLASFE------MVRNFRTPLLQ-LLESGDVDLCFANEDEA 236 (280)
Q Consensus 168 ~~~~~~v~i~~~~--~~~~~~~~~~~~a~~~g--~~v~~D~~~~~------~~~~~~~~l~~-~l~~~~~dil~~N~~E~ 236 (280)
+.++|+++..+.. ...+.+.++++.+++.+ .++++||.-.. ..+...+.+.+ +++ .+|+++||..|+
T Consensus 75 l~~~d~v~~G~l~~~~~~~~v~~~l~~~~~~~~~~~vv~DPVm~~~~~~~~~~~~~~~~l~~~ll~--~~diitpN~~E~ 152 (289)
T 3pzs_A 75 LKDCDAVLSGYIGSPEQGSHILAAVAQVKQANPDAWYFCDPVMGHPEKGCIVAPGVAEFFCNEALP--ASDMIAPNLLEL 152 (289)
T ss_dssp GGGCCEEEECCCSSHHHHHHHHHHHHHHHHHCTTCEEEECCCCEETTTEECSCHHHHHHHHHTHHH--HCSEECCCHHHH
T ss_pred ccCCCEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCccccCCCCcccCHHHHHHHHHHhhc--cCCEEeCCHHHH
Confidence 3578887666432 12466778888887766 78999973110 00122233443 455 899999999999
Q ss_pred HHHhcCCCC--CcHHHHHHHH-hcCCCEEEEEcC-CCce-------EEEeCCc
Q 023557 237 AELVRGEEN--ADSEAALEFL-AKRCQWAVVTLG-PNGC-------IAKHGKE 278 (280)
Q Consensus 237 ~~l~~~~~~--~~~~~~~~~l-~~~~~~vvvT~G-~~Ga-------~~~~~~~ 278 (280)
+.|+|.... ++..++++.+ +.+++.|+||.| .+|+ +++++++
T Consensus 153 ~~L~g~~~~~~~~~~~aa~~l~~~g~~~Vvvt~~~~~G~~~~~~~~~~~~~~~ 205 (289)
T 3pzs_A 153 EQLSGERVENVEQAVQVARSLCARGPKVVLVKHLSRAGYHADCFEMLLVTADD 205 (289)
T ss_dssp HHHHTSCCCSHHHHHHHHHHHHTTSCSEEEECCCGGGSSCTTEEEEEEECSSC
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHCCCEEEEecccCCCCCCCeEEEEEEeCCe
Confidence 999987532 2344455544 458999999985 5887 7666654
No 58
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=98.32 E-value=2.8e-06 Score=72.22 Aligned_cols=106 Identities=20% Similarity=0.169 Sum_probs=73.7
Q ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHC-CCeEEEECCChH-------HHhhhhhHHHhhccCCCceEEEcCHHHHHHHhc
Q 023557 170 GSKWLVLRFGMFNFEVIQAAIRIAKQE-GLSVSMDLASFE-------MVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~~~~~~~~a~~~-g~~v~~D~~~~~-------~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
+.|.+.+.+. .+++....+.+..++. +.++++||.-.. ..+...+.+.++++ .+|+++||..|++.|+|
T Consensus 74 ~~daik~G~l-~s~~~i~~v~~~l~~~~~~~vv~DPv~~~~g~l~~l~~~~~~~~l~~ll~--~adiitpN~~Ea~~L~g 150 (282)
T 3h74_A 74 HFDQALIGYV-GSVALCQQITTYLEQQTLSLLVVDPVLGDLGQLYQGFDQDYVAAMRQLIQ--QADVILPNTTEAALLTG 150 (282)
T ss_dssp CCSEEEECCC-CSHHHHHHHHHHHHHSCCSEEEECCCCEETTEECTTCCHHHHHHHHHHGG--GCSEECCCHHHHHHHHT
T ss_pred ccCEEEECCC-CCHHHHHHHHHHHHHCCCCcEEEcCeeecCCCCCCCCCHHHHHHHHHHhc--cCCEECCCHHHHHHHhC
Confidence 6788888854 2566666666655554 678999994221 11223344567787 99999999999999998
Q ss_pred CCC--CCcHHHHHHHH-h-cCC-CEEEEEcCC----CceEEEe-CCc
Q 023557 242 GEE--NADSEAALEFL-A-KRC-QWAVVTLGP----NGCIAKH-GKE 278 (280)
Q Consensus 242 ~~~--~~~~~~~~~~l-~-~~~-~~vvvT~G~----~Ga~~~~-~~~ 278 (280)
... .++..++++.+ + .++ +.|+||.|. .|+++++ +++
T Consensus 151 ~~~~~~~~~~~aa~~L~~~~g~~~~Vvvt~G~~~~~~g~~~~~~~~~ 197 (282)
T 3h74_A 151 APYQVTPDLEVILPALQAQLKTGAHAVITDVQRADQIGCAWLDEAGH 197 (282)
T ss_dssp CCCCSSCCHHHHHHHHHTTSCTTCEECEEEEEETTEEEEEEECTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCEEEEEecCCCCceEEEEEeCCCe
Confidence 652 24667766655 4 578 899999994 7888875 443
No 59
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A*
Probab=98.31 E-value=1.2e-06 Score=74.80 Aligned_cols=105 Identities=12% Similarity=0.027 Sum_probs=71.4
Q ss_pred CCcEEEEEecCC--CHHHHHHHHHHHHHCCCeEEEECCChHH-------HhhhhhHHHhhccCCCceEEEcCHHHHHHHh
Q 023557 170 GSKWLVLRFGMF--NFEVIQAAIRIAKQEGLSVSMDLASFEM-------VRNFRTPLLQLLESGDVDLCFANEDEAAELV 240 (280)
Q Consensus 170 ~~~~v~i~~~~~--~~~~~~~~~~~a~~~g~~v~~D~~~~~~-------~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~ 240 (280)
..|.+.+.+... ..+.+.++++.+++.+.++++||..... .+...+.+.++++ .+|+++||..|++.|+
T Consensus 77 ~~~aik~G~l~s~~~i~~v~~~l~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~~~ll~--~adiitpN~~Ea~~L~ 154 (291)
T 3mbh_A 77 QFDAIYTGYLGSPRQIQIVSDFIKDFRQPDSLIVADPVLGDNGRLYTNFDMEMVKEMRHLIT--KADVITPNLTELFYLL 154 (291)
T ss_dssp CCSEEEECCCSSTTHHHHHHHHHHHHCCTTCEEEECCCCEETTEECTTCCHHHHHHHHHHGG--GCSEECCBHHHHHHHH
T ss_pred ccCEEEECCCCCHHHHHHHHHHHHHhcCCCCcEEECceeeeCCCCCCCCCHHHHHHHHHHhc--cCCEEeCCHHHHHHHh
Confidence 678888884321 2456667777665567899999964321 1122234567787 8999999999999999
Q ss_pred cCCCC-----CcHHHHHHH-HhcCCCEEEEEcC-------CCceEEEeC
Q 023557 241 RGEEN-----ADSEAALEF-LAKRCQWAVVTLG-------PNGCIAKHG 276 (280)
Q Consensus 241 ~~~~~-----~~~~~~~~~-l~~~~~~vvvT~G-------~~Ga~~~~~ 276 (280)
|.... ++..++++. ++.+++.|+||.| ..|++++++
T Consensus 155 g~~~~~~~~~~~~~~aa~~L~~~g~~~Vvvtgg~~~~~~g~~g~~~~~~ 203 (291)
T 3mbh_A 155 DEPYKADSTDEELKEYLRLLSDKGPQVVIITSVPVHDEPHKTSVYAYNR 203 (291)
T ss_dssp TCCCCSCCCHHHHHHHHHHHHHTSCSEEEEEEEEETTEEEEEEEEEEET
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCEEEEEeccccCCCCcEEEEEEeC
Confidence 87521 234455554 4568999999965 367788765
No 60
>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A*
Probab=98.18 E-value=3.2e-06 Score=71.56 Aligned_cols=110 Identities=20% Similarity=0.161 Sum_probs=66.0
Q ss_pred cccCCCcEEEEEecCCC---HHHHHHHHHHHHHCCCeEEEECCChHHHhhhhh-HHHhhccCCCceEEEcCHHHHHHHhc
Q 023557 166 EDVKGSKWLVLRFGMFN---FEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRT-PLLQLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 166 ~~~~~~~~v~i~~~~~~---~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~-~l~~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
+.++.++++++..+..+ .+.+.++++.+++.++++++|+...... .++. ...++++...+|+|+||..|+..|+|
T Consensus 54 ~~~~~a~~lvi~~G~~~~~~~~~~~~~~~~a~~~~~pvVlDp~g~~~~-~~~~~~~~~ll~~~~~~vitPN~~E~~~L~g 132 (272)
T 1ekq_A 54 DMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGVPVILDPVGAGAT-PFRTESARDIIREVRLAAIRGNAAEIAHTVG 132 (272)
T ss_dssp HHHHHSSEEEEECTTCCHHHHHHHHHHHHHHHHTTCCEEEECTTBTTB-HHHHHHHHHHHHHSCCSEEEECHHHHHHHCC
T ss_pred HHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCcCcc-cchHHHHHHHHccCCCeEECCCHHHHHHHhC
Confidence 45667899999844333 3567778888889999999999743111 1111 11233320168999999999999988
Q ss_pred CC-C----------CCcHHHHHHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 242 GE-E----------NADSEAALEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 242 ~~-~----------~~~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
.. . .++..++.+.+ +++...+++| |+.+ +++++++
T Consensus 133 ~~~~~~~gvd~~~~~~~~~~aa~~l~~~~~~vVv~~-G~~~-~i~~~~~ 179 (272)
T 1ekq_A 133 VTDWLIKGVDAGEGGGDIIRLAQQAAQKLNTVIAIT-GEVD-VIADTSH 179 (272)
T ss_dssp ---------------HHHHHHHHHHHHHHTSEEEEC-SSSE-EEECSSC
T ss_pred CCcccccCccCCCCHHHHHHHHHHHHHHcCCEEEEE-CCCC-EEEeCCE
Confidence 54 2 11233444444 3444455555 9887 4445443
No 61
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} PDB: 3hpd_A
Probab=97.79 E-value=3.3e-05 Score=64.95 Aligned_cols=109 Identities=21% Similarity=0.261 Sum_probs=67.4
Q ss_pred cccCCCcEEEEEecCCCHH---HHHHHHHHHHHCCCeEEEECCChHHHhhhhh-HHHhhccCCCceEEEcCHHHHHHHhc
Q 023557 166 EDVKGSKWLVLRFGMFNFE---VIQAAIRIAKQEGLSVSMDLASFEMVRNFRT-PLLQLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 166 ~~~~~~~~v~i~~~~~~~~---~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~-~l~~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
+.++.+|++++..++.+.+ .+..+++.+++.++++++|+...... .++. .+.++++. .+++++||..|+..|+|
T Consensus 52 ~~~~~~dalvi~~G~~~~~~~~~~~~~~~~a~~~~~pvVlDpv~~~~~-~~~~~~~~~ll~~-~~~vITPN~~E~~~L~g 129 (265)
T 1v8a_A 52 EMIRLADAVVINIGTLDSGWRRSMVKATEIANELGKPIVLDPVGAGAT-KFRTRVSLEILSR-GVDVLKGNFGEISALLG 129 (265)
T ss_dssp HHHHHCSEEEEECTTCCHHHHHHHHHHHHHHHHHTCCEEEECTTBTTB-HHHHHHHHHHHHH-CCSEEEEEHHHHHHHHH
T ss_pred HHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHcCCcEEEcCcccccc-ccCHHHHHHHHHh-CCcEEcCCHHHHHHHhC
Confidence 4567899999994443443 45667777888899999999753111 1222 22333331 38999999999999987
Q ss_pred CCC----------C-CcHHHHHHHH-hcCCCEEEEEcCCCceEEEeCCc
Q 023557 242 GEE----------N-ADSEAALEFL-AKRCQWAVVTLGPNGCIAKHGKE 278 (280)
Q Consensus 242 ~~~----------~-~~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~~ 278 (280)
... . ++..++.+.+ +++...|++| |+.+.+ +++++
T Consensus 130 ~~~~~~gvd~~~~~~~~~~~aa~~la~~~~~~Vvlk-G~~d~i-~~~~~ 176 (265)
T 1v8a_A 130 EEGKTRGVDSLEYGEEEAKKLTMNAAREFNTTVAVT-GAVDYV-SDGRR 176 (265)
T ss_dssp HHC----------CHHHHHHHHHHHHHHTTSEEEEE-SSSEEE-ECSSC
T ss_pred CcccccCcCcccccHHHHHHHHHHHHHHhCcEEEEc-CCCcEE-EcCCE
Confidence 531 0 1233344444 4455567777 877643 44443
No 62
>3drw_A ADP-specific phosphofructokinase; AMP, GLYC kinase, magnesium, metal-binding, transferase, structural G PSI-2, protein structure initiative; HET: AMP; 1.90A {Pyrococcus horikoshii} PDB: 1u2x_A
Probab=97.76 E-value=0.00031 Score=63.25 Aligned_cols=211 Identities=13% Similarity=0.156 Sum_probs=119.0
Q ss_pred CCeEEEecCCeeEeEEeecChhHHH----hCC------------C------------------CCCcceeeCHHHHHHHH
Q 023557 15 AALILGLQPAALIDHVARVDWSLLD----QIP------------G------------------ERGGSIPVAIEELEHIL 60 (280)
Q Consensus 15 ~~~i~~iG~~~~vD~~~~~~~~~l~----~~~------------~------------------~~g~~~~~~~~~~~~~~ 60 (280)
...|++-- |++||.+++.+.+.|. .+. . -.|.+..+..++...++
T Consensus 27 ~~~i~~ay-N~NVDai~~~~~~~i~~li~~~~~~~v~~~~~~~p~~I~s~~dl~~~~~~~~~~G~aaE~~v~~~~~~~~~ 105 (474)
T 3drw_A 27 HLSIYTAY-NANIAAIVKLNQETIQNLINAFDPDEVKRRIEEYPREINEPIDFVARLVHTLKLGKPAAVPLVNEKMNEWF 105 (474)
T ss_dssp TCEEEEES-CCEEEEEEECCHHHHHHHHHTSCHHHHHHHHHHCCSSBSSHHHHHHHHHHHHHHTCCEEEEECCTTHHHHH
T ss_pred cCceEEEe-cccEEEEEEcCHHHHHHHHHhcChHHhhhhhhcCCccCCCHHHHHHHHHHHHhCCCceEEecccHhHHHHH
Confidence 34666666 9999999999885332 222 1 11222333333444444
Q ss_pred HhccccCCCCCCCceeecCchHHHHHHHHHhhcCC-cEEEEEeecCChhHHHHHHHHHhCCC------------------
Q 023557 61 SEVKTHILDEPSPIKTIAGGSVTNTIRGLSVGFGV-PCGLIGAYGDDQQGQLFVSNMQFSGV------------------ 121 (280)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~GG~~~N~a~~la~~lG~-~~~~~~~vG~D~~g~~i~~~L~~~gV------------------ 121 (280)
...- .......||.+.-.|..||+ +|. ++.+.+..+... ..+.| ..+|
T Consensus 106 ~~~~-------~~~~~~~GGnA~imAn~La~-lg~~~Vi~~~p~~sk~----~~~ll-~~~i~~p~~e~g~l~l~~~~ea 172 (474)
T 3drw_A 106 DKTF-------RYEEERLGGQAGIIANTLAG-LKIRKVIAYTPFLPKR----LAELF-KKGVLYPVVENGELQFKPIQEA 172 (474)
T ss_dssp HHHC-------CCSEEEEESHHHHHHHHHHH-TTCSEEEECCSCCCHH----HHTTS-CTTEEEEEESSSSEEEEEGGGC
T ss_pred HHhc-------ccceEecCChHHHHHHHHHH-cCCCcEEEecCcCCHH----HHHhc-CCcceeecccCCceeecCchhh
Confidence 4211 12367899999999999996 999 587777776543 33333 2222
Q ss_pred -------ccceeeeCCCCceeEE---EEEcCCCceeeeecCCcCC-CCC-cccCc---ccccCCCcEEEEE-ecCCCH--
Q 023557 122 -------DVSRLRMKRGPTGQCV---CLVDASGNRTMRPCLSNAV-KIQ-ADELI---AEDVKGSKWLVLR-FGMFNF-- 183 (280)
Q Consensus 122 -------~~~~v~~~~~~T~~~~---~~~~~~g~r~~~~~~~~~~-~~~-~~~l~---~~~~~~~~~v~i~-~~~~~~-- 183 (280)
+..+|..-+....+.+ -++.|.-+|-++.+...+. .+. .+++. .+..+.+|.++++ +.++..
T Consensus 173 ~~~~~~~~iH~I~Ey~~G~~~~~~~~~~~aPraNRfI~s~D~~N~~~l~~~e~f~~~l~e~~~~~d~~vLSGlq~m~~~y 252 (474)
T 3drw_A 173 YREGDPLKINRIFEFRKGLKFKLGDETIEIPNSGRFIVSARFESISRIETREDIKPFLGEIGKEVDGAIFSGYQGLRTKY 252 (474)
T ss_dssp CCTTCCCCEEEEEEECTTCEEESSSCEEECCSCEEEEEEECCSGGGCCSCCTTTGGGHHHHHHHCSEEEECCGGGCCSBC
T ss_pred hccCCCCCcEEEEEcCCCCeeecCCceEEccCCCeEEEEcCCCCHHhccccHHHHHHHHHhhcCCCEEEEeccccccccc
Confidence 2222211111111110 2333444565555443343 333 23333 2233468999999 443322
Q ss_pred ----------HHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHH-hhccCCCceEEEcCHHHHHHHhcC
Q 023557 184 ----------EVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLL-QLLESGDVDLCFANEDEAAELVRG 242 (280)
Q Consensus 184 ----------~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~-~~l~~~~~dil~~N~~E~~~l~~~ 242 (280)
+...+.++..+..+.++-|.+++..- ...+..+. .+++ .+|.+=+|++|+..+.+.
T Consensus 253 ~dg~~~~~~l~~~~e~i~~l~~~~~~iH~E~As~~~-~~l~~~i~~~i~p--~vDSlGmNEqELa~l~~~ 319 (474)
T 3drw_A 253 SDGKDANYYLRRAKEDIIEFKEKDVKIHVEFASVQD-RKLRKKIITNILP--FVDSVGIDEAEIAQILSV 319 (474)
T ss_dssp TTSCBHHHHHHHHHHHHHHHHHTTCEEEEECCCCSC-HHHHHHHHHHTGG--GSSEEEEEHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCeEEEEeCcccc-HHHHHHHHHHhcc--cccccccCHHHHHHHHHH
Confidence 22234445556789999999986532 13344443 5666 899999999999887763
No 63
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00026 Score=65.71 Aligned_cols=97 Identities=11% Similarity=-0.015 Sum_probs=61.6
Q ss_pred CCcEEEEEecCCCHH---HHHHHHHHHHHCCCeEEEECCChH------HHhhhhhHHH-hhccCCCceEEEcCHHHHHHH
Q 023557 170 GSKWLVLRFGMFNFE---VIQAAIRIAKQEGLSVSMDLASFE------MVRNFRTPLL-QLLESGDVDLCFANEDEAAEL 239 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~---~~~~~~~~a~~~g~~v~~D~~~~~------~~~~~~~~l~-~~l~~~~~dil~~N~~E~~~l 239 (280)
+.|.|.+.+. +.+ .+.++++..++.+.++++||.-.. ..+...+.+. ++++ .+|+|+||..|+..|
T Consensus 91 ~~daIkiG~l--s~~~i~~v~~~l~~~~~~~~~vVlDPvm~a~~g~~l~~~~~~~~l~~~Ll~--~a~iitPN~~Ea~~L 166 (550)
T 3rm5_A 91 KCNVIKTGML--TAAAIEVLHEKLLQLGENRPKLVVDPVLVATSGSSLAGKDIVSLITEKVAP--FADILTPNIPECYKL 166 (550)
T ss_dssp CCSEEEECSC--CHHHHHHHHHHHHHHGGGSCEEEECCCC---------CTTHHHHHHHHTGG--GCSEECCBHHHHHHH
T ss_pred CCCEEEECCC--CHHHHHHHHHHHHHhcccCCCEEEecceecCCCCcCCCHHHHHHHHHHhhC--cceEEecCHHHHHHH
Confidence 6789888854 544 444555555445889999995311 0011223344 5666 899999999999999
Q ss_pred hcCC--C--CCcHHHHHHHH-hcCC-CEEEEEcCCCc
Q 023557 240 VRGE--E--NADSEAALEFL-AKRC-QWAVVTLGPNG 270 (280)
Q Consensus 240 ~~~~--~--~~~~~~~~~~l-~~~~-~~vvvT~G~~G 270 (280)
+|.. . .++..++++.+ +.+. +.|+||.|..+
T Consensus 167 ~g~~~~i~~~~d~~~aa~~L~~~g~~~~VvvkgG~~~ 203 (550)
T 3rm5_A 167 LGEERKVNGLQDIFQIAKDLAKITKCSNILVKGGHIP 203 (550)
T ss_dssp HSCCCCCCSSHHHHHHHHHHHHHHCCSCEEEEECC--
T ss_pred hCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 9863 1 12445555544 4565 89999998864
No 64
>1gc5_A ADP-dependent glucokinase; ALFA/beta sandwichs, induced-fitting, transferase; HET: ADP; 2.30A {Thermococcus litoralis} SCOP: c.72.1.3
Probab=97.51 E-value=0.00086 Score=60.37 Aligned_cols=155 Identities=13% Similarity=0.106 Sum_probs=87.8
Q ss_pred ecCchHHHHHHHHHhhcCCcEEE--EEeecCChhHHHHHHHHHhCCCccce-----eee-------CCCCceeEEEE---
Q 023557 77 IAGGSVTNTIRGLSVGFGVPCGL--IGAYGDDQQGQLFVSNMQFSGVDVSR-----LRM-------KRGPTGQCVCL--- 139 (280)
Q Consensus 77 ~~GG~~~N~a~~la~~lG~~~~~--~~~vG~D~~g~~i~~~L~~~gV~~~~-----v~~-------~~~~T~~~~~~--- 139 (280)
..||.+.-.|..++. +|.++.+ ++.+| +...+.|...+|..-. +.. ...+.-..+++
T Consensus 117 ~mGGnAgimAn~la~-lg~~~vl~~~~~~s-----~~~~~l~~~~~i~~p~~~~g~l~~~~~~ea~~~~~~~iH~I~Ey~ 190 (467)
T 1gc5_A 117 RIGGQAGIMANLLGG-VYRIPTIVHVPQNP-----KLQAELFVDGPIYVPVFEGNKLKLVHPKDAIAEEEELIHYIYEFP 190 (467)
T ss_dssp EEESHHHHHHHHHHH-TSCCCEEECCSCCC-----HHHHTTSCSSSEEEEEECSSCEEEECGGGSCCSCCCCEEEEEEEC
T ss_pred ccCccHHHHHHHHHh-cCCCEEEEcCCCCC-----HHHHHhcCCCCeeeeeccCCceecccchhhccCCCCcceEEEEcC
Confidence 999999999999996 9999877 55555 4455555423442110 000 00122222222
Q ss_pred --------EcCCCceeeeecCCcCCCCCc-ccCc---ccccCCCcEEEEE-ecCCC--------H----HHHHHHHHHHH
Q 023557 140 --------VDASGNRTMRPCLSNAVKIQA-DELI---AEDVKGSKWLVLR-FGMFN--------F----EVIQAAIRIAK 194 (280)
Q Consensus 140 --------~~~~g~r~~~~~~~~~~~~~~-~~l~---~~~~~~~~~v~i~-~~~~~--------~----~~~~~~~~~a~ 194 (280)
+.|.-+|-++.+...+..+.. +++. .+...++|.++++ +.++. . +.+.+.++...
T Consensus 191 ~G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~e~~~~~dl~vlSG~q~l~~~y~~g~~~~~~l~~~~~~l~~l~ 270 (467)
T 1gc5_A 191 RGFQVFDVQAPRENRFIANADDYNARVYMRREFREGFEEITRNVELAIISGLQVLKEYYPDGTTYKDVLDRVESHLNILN 270 (467)
T ss_dssp SSCEETTEECSSCEEEEEECCSSTTTTCCCHHHHHSHHHHHTTCSEEEECCGGGCCSBCTTSCBHHHHHHHHHHHHHHHH
T ss_pred CCCeecceeccCCceEEEecCCCCccccccHHHHHHHHhhccCCCEEEEechhcccCccCCchhHHHHHHHHHHHHHhhc
Confidence 223334555544333333322 2221 1334569999999 43321 1 12222333325
Q ss_pred HCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHh
Q 023557 195 QEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELV 240 (280)
Q Consensus 195 ~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~ 240 (280)
..+.++-+.+++..-. ..+..+..+++ .+|.+=+|++|+..+.
T Consensus 271 ~~~~~iH~E~As~~~~-~l~~~i~~ilp--~vDSlGmNEqELa~l~ 313 (467)
T 1gc5_A 271 RYNVKSHFEFAYTANR-RVREALVELLP--KFTSVGLNEVELASIM 313 (467)
T ss_dssp HTTCEEEEECCCCCCH-HHHHHHHHHGG--GCSEEEECHHHHHHHH
T ss_pred CCCCeEEEEECCcccH-HHHHHHHhhcc--ccccCccCHHHHHHHH
Confidence 5789999999865322 34445457777 9999999999998544
No 65
>1ua4_A Glucokinase, ADP-dependent glucokinase; transferase; HET: GLC BGC AMP; 1.90A {Pyrococcus furiosus} SCOP: c.72.1.3
Probab=97.48 E-value=0.0015 Score=58.70 Aligned_cols=157 Identities=15% Similarity=0.075 Sum_probs=89.3
Q ss_pred eecCchHHHHHHHHHhhcCCcEEE--EEeecCChhHHHHHHHHHhCCCcccee-----e-------eCCCCceeEEEEEc
Q 023557 76 TIAGGSVTNTIRGLSVGFGVPCGL--IGAYGDDQQGQLFVSNMQFSGVDVSRL-----R-------MKRGPTGQCVCLVD 141 (280)
Q Consensus 76 ~~~GG~~~N~a~~la~~lG~~~~~--~~~vG~D~~g~~i~~~L~~~gV~~~~v-----~-------~~~~~T~~~~~~~~ 141 (280)
...||.+...|..+++ +|.++.+ ++.+|. .+.+.|...+|..-.+ . ....+....+++--
T Consensus 108 ~~~GGnA~imAn~la~-lg~~~vl~~~~~l~~-----~~~~lf~~~~i~~p~~~~~~~~l~~~~e~~~~~~~~iH~I~Ef 181 (455)
T 1ua4_A 108 LRMGGQAGIMANLLGG-VYGVPVIVHVPQLSR-----LQANLFLDGPIYVPTLENGEVKLIHPKEFSGDEENCIHYIYEF 181 (455)
T ss_dssp EEEESHHHHHHHHHTT-TTCCCEEECCSCCCH-----HHHTTSCSSSEEEEEEETTEEEEECGGGCSCCCCCCEEEEEEE
T ss_pred cccCCcHHHHHHHHHH-cCCCEEEEeCCCCCH-----HHHHhcCCCCeEeecccCCccccccchhhccCCCCCceEEEEc
Confidence 3999999999999996 9999887 776664 3555554234433001 0 00123344444322
Q ss_pred CCC-----------ceeeeecCCcCCCCC-cccCcc---cccCCCcEEEEE-ecCCCH----HHHHHHH---HHHHHCCC
Q 023557 142 ASG-----------NRTMRPCLSNAVKIQ-ADELIA---EDVKGSKWLVLR-FGMFNF----EVIQAAI---RIAKQEGL 198 (280)
Q Consensus 142 ~~g-----------~r~~~~~~~~~~~~~-~~~l~~---~~~~~~~~v~i~-~~~~~~----~~~~~~~---~~a~~~g~ 198 (280)
+.| +|-++.+...+..+. .+++.. +...++|.++++ +.+++. +.....+ +..+..+.
T Consensus 182 ~~G~~~~~~~aPraNRfI~s~D~~n~~l~~~e~f~~~l~e~~~~~dl~vlSG~q~l~~~~~~~~~~~~l~~i~~L~~~~~ 261 (455)
T 1ua4_A 182 PRGFRVFEFEAPRENRFIGSADDYNTTLFIREEFRESFSEVIKNVQLAILSGLQALTKENYKEPFEIVKSNLEVLNEREI 261 (455)
T ss_dssp CTTCEETTEECSSCEEEEEECCSSGGGTCCCGGGSTTHHHHGGGCSEEEECCGGGCCTTTCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCeecceeccccceeEEecCCCcccCcccHHHHHHHHhhccCCcEEEEechhcccccchHHHHHHHHHHHHHhcCCCc
Confidence 334 343433332223332 222221 223449999999 443321 2222221 12356788
Q ss_pred eEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhc
Q 023557 199 SVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 199 ~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
++-|++++.... ..+..+..+++ .+|.+-+|++|+..+.+
T Consensus 262 ~iH~ElAs~~~~-~~~~~i~~ilp--~vDSlGmNE~EL~~l~~ 301 (455)
T 1ua4_A 262 PVHLEFAFTPDE-KVREEILNVLG--MFYSVGLNEVELASIME 301 (455)
T ss_dssp CEEEECCCCCCH-HHHHHHHHHGG--GCSEEEECHHHHHHHHH
T ss_pred eEEEEeCCccCH-HHHHHHHhhhc--cCcccccCHHHHHHHHH
Confidence 999999866422 33444447787 99999999999987754
No 66
>1l2l_A ADP-dependent glucokinase; ADP glucokinase APO, transferase; 2.00A {Pyrococcus horikoshii} SCOP: c.72.1.3
Probab=97.46 E-value=0.00037 Score=62.60 Aligned_cols=154 Identities=18% Similarity=0.117 Sum_probs=86.8
Q ss_pred ecCchHHHHHHHHHhhcCCcEEE--EEeecCChhHHHHHHHHHhCCCccce-----eee-------CCCCceeEE-----
Q 023557 77 IAGGSVTNTIRGLSVGFGVPCGL--IGAYGDDQQGQLFVSNMQFSGVDVSR-----LRM-------KRGPTGQCV----- 137 (280)
Q Consensus 77 ~~GG~~~N~a~~la~~lG~~~~~--~~~vG~D~~g~~i~~~L~~~gV~~~~-----v~~-------~~~~T~~~~----- 137 (280)
..||.+.-.|..++. +|.++.+ ++.+| +..++.|...+|..-. +.. ...+.-..+
T Consensus 112 ~mGGnA~imAn~la~-lg~~~vl~~~~~~s-----~~~~~l~~~~~i~~p~~~~g~l~l~~~~e~~~~~~~~iH~I~Ey~ 185 (457)
T 1l2l_A 112 RMGGQVGIMANLLGG-VYGIPVIAHVPQLS-----ELQASLFLDGPIYVPTFERGELRLIHPREFRKGEEDCIHYIYEFP 185 (457)
T ss_dssp EEESHHHHHHHHHTT-TSCCCEEECCSSCC-----HHHHHTSCSSSEEEEC------CEECGGGC----CCCEEECCEEC
T ss_pred ccCchHHHHHHHHHH-cCCCEEEEcCCCCC-----HHHHHhcCCCCeEeeeccCCceeccCchhhccCCCCcceEEEEcC
Confidence 999999999999996 9999877 55555 3455555422332110 000 000111111
Q ss_pred ------EEEcCCCceeeeecCCcCCCCCc-ccCc---ccccCCCcEEEEE-ecCCCH----H---HHHHHHHHHHHCCCe
Q 023557 138 ------CLVDASGNRTMRPCLSNAVKIQA-DELI---AEDVKGSKWLVLR-FGMFNF----E---VIQAAIRIAKQEGLS 199 (280)
Q Consensus 138 ------~~~~~~g~r~~~~~~~~~~~~~~-~~l~---~~~~~~~~~v~i~-~~~~~~----~---~~~~~~~~a~~~g~~ 199 (280)
-++.|.-+|-++.+...+..+.. +++. .+...++|.++++ +.++.. . ...+.++..+..+.+
T Consensus 186 ~G~~~~~~~aPraNRfI~s~D~~N~~l~~~e~f~~~l~e~~~~~d~~vlSG~q~l~~~~~~~~~~~~~~~i~~L~~~~~~ 265 (457)
T 1l2l_A 186 RNFKVLDFEAPRENRFIGAADDYNPILYVREEWIERFEEIAKRSELAIISGLHPLTQENHGKPIKLVREHLKILNDLGIR 265 (457)
T ss_dssp TTCEETTEECSSCEEEEEEECSSGGGTCCCHHHHHSHHHHHTTCSEEEEECCTTCCTTTCHHHHHHHHHHHHHHHHTTCE
T ss_pred CCCeecceecCCCCeEEEEcCCCCCCCcccHHHHHHHHhhccCCCEEEEeccccccccchhhhHHHHHHHHHHhcCCCCe
Confidence 22334445555544333333322 2222 1334569999999 544322 1 122222233677899
Q ss_pred EEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHH
Q 023557 200 VSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAEL 239 (280)
Q Consensus 200 v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l 239 (280)
+-+.+++..-. ..+..+..+++ .+|.+=+|++|+..+
T Consensus 266 iH~E~As~~~~-~l~~~i~~ilp--~vDSlGmNEqELa~l 302 (457)
T 1l2l_A 266 AHLEFAFTPDE-VVRLEIVKLLK--HFYSVGLNEVELASV 302 (457)
T ss_dssp EEEECCCCSSH-HHHHHHHHHGG--GCSEEEECHHHHHHH
T ss_pred EEEEECCcccH-HHHHHHHhhcc--ccccCccCHHHHHHH
Confidence 99999865322 34445447777 999999999999875
No 67
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Probab=97.33 E-value=0.0018 Score=54.40 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=52.7
Q ss_pred cccCCCcEEEEEecCCCH---HHHHHHHHHHHHCCCeEEEECCChHHHhhhhhH-HHhhccCCCceEEEcCHHHHHHHhc
Q 023557 166 EDVKGSKWLVLRFGMFNF---EVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTP-LLQLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 166 ~~~~~~~~v~i~~~~~~~---~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~-l~~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
+..+.++.+++..+..+. +.+...++.+++.++++++||-..... .++.+ ..+++. ..+++|+||..|+..|+|
T Consensus 54 e~~~~a~alvIn~G~l~~~~~~~~~~a~~~a~~~~~PvVlDPVg~gas-~~r~~~~~~Ll~-~~~~VItpN~~E~~~L~g 131 (273)
T 3dzv_A 54 QMFQQTSALVLNLGHLSQEREQSLLAASDYARQVNKLTVVDLVGYGAS-DIRNEVGEKLVH-NQPTVVKGNLSEMRTFCQ 131 (273)
T ss_dssp HHHTTCSEEEEECCSCCHHHHHHHHHHHHHHHHTTCCEEEECTTTTSC-HHHHHHHHHHHH-TCCSEEEEEHHHHHHHTT
T ss_pred HHHHHCCeEEEecCCCChHHHHHHHHHHHHHHHcCCcEEEchhhcCCc-ccCHHHHHHHHh-cCCcEECCCHHHHHHHhC
Confidence 567889999999444444 456677777888999999999543211 12222 223332 268999999999999998
Q ss_pred CC
Q 023557 242 GE 243 (280)
Q Consensus 242 ~~ 243 (280)
..
T Consensus 132 ~~ 133 (273)
T 3dzv_A 132 LV 133 (273)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 68
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}
Probab=96.80 E-value=0.0023 Score=53.46 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=52.1
Q ss_pred cccCCCcEEEEEecCCCH---HHHHHHHHHHHHCCCeEEEECCChHHHhhhhhH-HHhhccCCCceEEEcCHHHHHHHhc
Q 023557 166 EDVKGSKWLVLRFGMFNF---EVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTP-LLQLLESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 166 ~~~~~~~~v~i~~~~~~~---~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~-l~~~l~~~~~dil~~N~~E~~~l~~ 241 (280)
+..+.++.++++.+..+. +.+....+.+.+.++++++||-..... .+|.+ ..+++. ..+++|++|..|...|+|
T Consensus 52 e~~~~a~al~iNiGtl~~~~~~~m~~A~~~A~~~~~PvVLDPVg~gas-~~R~~~~~~ll~-~~~~vIrgN~sEi~~L~g 129 (265)
T 3hpd_A 52 EMIRLADAVVINIGTLDSGWRRSMVKATEIANELGKPIVLDPVGAGAT-KFRTRVSLEILS-RGVDVLKGNFGEISALLG 129 (265)
T ss_dssp HHHHHCSEEEEECTTCCHHHHHHHHHHHHHHHHHTCCEEEECTTBTTB-HHHHHHHHHHHH-HCCSEEEEEHHHHHHHHH
T ss_pred HHHHHCCeEEEECCCCChHHHHHHHHHHHHHHHcCCCEEEcCCCCCCc-HHHHHHHHHHHh-cCCcEEcCCHHHHHHHhc
Confidence 456778999999443343 456666778889999999999644221 22322 334444 278999999999999987
Q ss_pred C
Q 023557 242 G 242 (280)
Q Consensus 242 ~ 242 (280)
.
T Consensus 130 ~ 130 (265)
T 3hpd_A 130 E 130 (265)
T ss_dssp H
T ss_pred c
Confidence 4
No 69
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=96.59 E-value=0.0091 Score=55.03 Aligned_cols=77 Identities=21% Similarity=0.147 Sum_probs=54.3
Q ss_pred cccCC-CcEEEEEecC-CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhH-HHhhccCCCceEEEcCHHHHHHHhcC
Q 023557 166 EDVKG-SKWLVLRFGM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTP-LLQLLESGDVDLCFANEDEAAELVRG 242 (280)
Q Consensus 166 ~~~~~-~~~v~i~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~-l~~~l~~~~~dil~~N~~E~~~l~~~ 242 (280)
+..+. ++.+++..+. .+.+.+..+++.+++.++++++||-..... .++.+ ..++++...+++|++|..|+..|+|.
T Consensus 301 e~~~~~~~alvin~G~l~~~~~~~~a~~~a~~~~~PvVlDPVg~~a~-~~r~~~~~~Ll~~~~~~vItpN~~E~~~L~g~ 379 (540)
T 3nl6_A 301 DLAAIPHATLLLNTGSVAPPEMLKAAIRAYNDVKRPIVFDPVGYSAT-ETRLLLNNKLLTFGQFSCIKGNSSEILGLAEL 379 (540)
T ss_dssp HHTTSTTCEEEEESSCSCCHHHHHHHHHHHHTTTCCEEEECTTCTTS-HHHHHHHHHHTTSCCCSEEEECHHHHHHHTTC
T ss_pred HHHhccCCeEEEeCCCCCHHHHHHHHHHHHHHcCCCEEEChHHhhcc-cccHHHHHHHHhhCCCeEECCCHHHHHHHhCC
Confidence 46677 8999999333 347788888888899999999999643211 22333 23444312589999999999999885
Q ss_pred C
Q 023557 243 E 243 (280)
Q Consensus 243 ~ 243 (280)
.
T Consensus 380 ~ 380 (540)
T 3nl6_A 380 N 380 (540)
T ss_dssp -
T ss_pred C
Confidence 3
No 70
>3rss_A Putative uncharacterized protein; unknown function, ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET: NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A* 3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A* 3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A* 3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Probab=96.49 E-value=0.0065 Score=55.53 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=61.3
Q ss_pred cccCCCcEEEEEecCCCHHHHHHHHH-HHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCC
Q 023557 166 EDVKGSKWLVLRFGMFNFEVIQAAIR-IAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE 244 (280)
Q Consensus 166 ~~~~~~~~v~i~~~~~~~~~~~~~~~-~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~ 244 (280)
+.++.+|++++..++-..+...++++ .+++.++++++|+..-.. ...++.+..+ ..++++||..|+..|+|...
T Consensus 316 ~~~~~~davviGpGlg~~~~~~~~~~~~l~~~~~pvVlDadgl~~---l~~~ll~~~~--~~~vlTPN~~E~~~L~g~~~ 390 (502)
T 3rss_A 316 ELSKDVDVVAIGPGLGNNEHVREFVNEFLKTLEKPAVIDADAINV---LDTSVLKERK--SPAVLTPHPGEMARLVKKTV 390 (502)
T ss_dssp HHHTTCSEEEECTTCCCSHHHHHHHHHHHHHCCSCEEECHHHHHT---CCHHHHHHCS--SCEEECCCHHHHHHHHTCCH
T ss_pred HHhccCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEeCcccch---hcHHHHhccC--CCEEEeCCHHHHHHHhCCCc
Confidence 45688999999943322233334333 456679999999965321 1123333333 68999999999999998641
Q ss_pred ---CCcHHHHHH-HHhcCCCEEEEEcCCCceEEEeCC
Q 023557 245 ---NADSEAALE-FLAKRCQWAVVTLGPNGCIAKHGK 277 (280)
Q Consensus 245 ---~~~~~~~~~-~l~~~~~~vvvT~G~~Ga~~~~~~ 277 (280)
.++ .++.+ +.+++ ..+|+..|.. .++++++
T Consensus 391 ~~~~~d-~~aa~~la~~~-~~~VvlKG~~-~vi~~~~ 424 (502)
T 3rss_A 391 GDVKYN-YELAEEFAKEN-DCVLVLKSAT-TIVTDGE 424 (502)
T ss_dssp HHHTTC-HHHHHHHHHHH-TSEEEECSSS-EEEECSS
T ss_pred cchHHH-HHHHHHHHHHc-CCEEEEeCCC-eEEEcCC
Confidence 123 34444 33443 2355555654 4445444
No 71
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A
Probab=95.94 E-value=0.011 Score=50.55 Aligned_cols=99 Identities=9% Similarity=0.064 Sum_probs=55.7
Q ss_pred ccCCCcEEEEEecC-CCH---HHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcC
Q 023557 167 DVKGSKWLVLRFGM-FNF---EVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRG 242 (280)
Q Consensus 167 ~~~~~~~v~i~~~~-~~~---~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~ 242 (280)
.++.++++.++.++ .+. +.+.++++..+ .++++++|++....... +. ++++.+.+++|+||..|+..|+|.
T Consensus 108 ~~~~~dav~IG~Gl~~~~~~~~~v~~~l~~~~-~~~pvVlDa~g~~ll~~-~~---~~l~~~~~~viTPN~~E~~~L~g~ 182 (310)
T 2r3b_A 108 VVEQADVILIGPGLGLDATAQQILKMVLAQHQ-KQQWLIIDGSAITLFSQ-GN---FSLTYPEKVVFTPHQMEWQRLSHL 182 (310)
T ss_dssp HHHHCSEEEECTTCCSSHHHHHHHHHHHHHCC-TTCEEEEETHHHHHHHH-TT---CCCSSGGGEEEECCHHHHHHHHCC
T ss_pred HhccCCEEEEeCCCCCCHHHHHHHHHHHHhcC-CCCcEEEcCCcchhccc-ch---hhhcCCCCEEEcCCHHHHHHHhCC
Confidence 44578899998332 233 33344443322 47899999965432211 11 112101689999999999999986
Q ss_pred CCCC---cH-HHHHHHHhcCCCEEEEEcCCCceEEEe
Q 023557 243 EENA---DS-EAALEFLAKRCQWAVVTLGPNGCIAKH 275 (280)
Q Consensus 243 ~~~~---~~-~~~~~~l~~~~~~vvvT~G~~Ga~~~~ 275 (280)
...+ +. .++.+.+ + .+|+..| .+.++++
T Consensus 183 ~~~~~~~~~a~~aA~~l--g--~~VvlKG-~~~vi~~ 214 (310)
T 2r3b_A 183 PIEQQTLANNQRQQAKL--G--STIVLKS-HRTTIFH 214 (310)
T ss_dssp CGGGCCHHHHHHHHHHH--T--SEEEECS-TTCEEEC
T ss_pred CCCcccchHHHHHHHHh--C--cEEEEeC-CceEEEE
Confidence 5211 22 3344444 3 3455556 4566655
No 72
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A
Probab=95.88 E-value=0.0092 Score=50.26 Aligned_cols=101 Identities=11% Similarity=0.016 Sum_probs=59.8
Q ss_pred ccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCC--
Q 023557 167 DVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEE-- 244 (280)
Q Consensus 167 ~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~-- 244 (280)
.++++|++++..++-..+...++++...+.+.++++|...-. . +.+ .... ..++++||..|+..|+|...
T Consensus 95 ~l~~~davviGPGlg~~~~~~~~~~~~l~~~~p~VlDAdal~----~-~~l-~~~~--~~~vlTPN~~E~~~L~g~~~~~ 166 (279)
T 3rpz_A 95 LEETYRAIAIGPGLPQTESVQQAVDHVLTADCPVILDAGALA----K-RTY-PKRE--GPVILTPHPGEFFRMTGVPVNE 166 (279)
T ss_dssp CSSCCSEEEECTTCCCCHHHHHHHHHHTTSSSCEEECGGGCC----S-CCC-CCCS--SCEEECCCHHHHHHHHCCCHHH
T ss_pred hccCCCEEEECCCCCCCHHHHHHHHHHHhhCCCEEEECCccc----h-hhh-hhcc--CCEEEecCHHHHHHHhCCCccc
Confidence 457889999993322334456667777777889999986431 1 111 1112 67999999999999998642
Q ss_pred -CCcHHHHHHHH-hcCCCEEEEEcCCCceEEEeCC
Q 023557 245 -NADSEAALEFL-AKRCQWAVVTLGPNGCIAKHGK 277 (280)
Q Consensus 245 -~~~~~~~~~~l-~~~~~~vvvT~G~~Ga~~~~~~ 277 (280)
.++..++.+.+ +++.. +|+-.|. +.++++++
T Consensus 167 ~~~d~~~aa~~la~~~~~-~VvlKG~-~~vi~~~~ 199 (279)
T 3rpz_A 167 LQKKRAEYAKEWAAQLQT-VIVLKGN-QTVIAFPD 199 (279)
T ss_dssp HTTSHHHHHHHHHHHHTS-EEEECST-TCEEECTT
T ss_pred hHHHHHHHHHHHHHHcCe-EEEEeCC-CcEEECCC
Confidence 12344444444 33333 4444454 34444443
No 73
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans}
Probab=95.22 E-value=0.015 Score=49.81 Aligned_cols=100 Identities=9% Similarity=0.087 Sum_probs=55.5
Q ss_pred ccCCCcEEEEEecC-CCH---HHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhh-ccCCCceEEEcCHHHHHHHhc
Q 023557 167 DVKGSKWLVLRFGM-FNF---EVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQL-LESGDVDLCFANEDEAAELVR 241 (280)
Q Consensus 167 ~~~~~~~v~i~~~~-~~~---~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~-l~~~~~dil~~N~~E~~~l~~ 241 (280)
.++..|++.+..++ .+. +.+.++++..+ .++++++|++....... +. ++ ++ +.+++|+||..|+..|++
T Consensus 122 ~~~~~dav~IG~Gl~~~~~~~~~v~~~l~~~~-~~~pvVlDa~g~~ll~~-~~---~l~L~-~~~~viTPN~~E~~~L~g 195 (311)
T 3bgk_A 122 QITAADVVLMGPGLAEDDLAQTTFDVVWQAIE-PKQTLIIDGSAINLLAK-RK---PAIWP-TKQIILTPHQKEWERLSG 195 (311)
T ss_dssp HHHHCSEEEECTTCCSSHHHHHHHHHHHHHCC-TTSEEEEETHHHHHHHH-CC----CCCS-CSCEEEECCSCC-CTTTC
T ss_pred HhccCCEEEEcCCCCCCHHHHHHHHHHHHHcC-CCCeEEEeCChhhhhcc-Ch---hhcCC-CCCEEECCcHHHHHHHhC
Confidence 44578899998432 233 33344443322 47899999965432211 11 11 32 268999999999999998
Q ss_pred CCCCC---cH-HHHHHHHhcCCCEEEEEcCCCceEEEe
Q 023557 242 GEENA---DS-EAALEFLAKRCQWAVVTLGPNGCIAKH 275 (280)
Q Consensus 242 ~~~~~---~~-~~~~~~l~~~~~~vvvT~G~~Ga~~~~ 275 (280)
....+ +. .++.+.+.+ ..+|+..| .+.++++
T Consensus 196 ~~~~~~~~d~~~~aa~~l~~--g~~VvlkG-~~~~i~~ 230 (311)
T 3bgk_A 196 LTIPEQIEAATQTALAHFPK--ETILVAKS-HQTKIYQ 230 (311)
T ss_dssp CCSTTCCHHHHHHHHTTSCT--TCEEEECS-SSCEEEE
T ss_pred CCCCcchhhHHHHHHHHHhc--CCEEEEeC-CCeEEEE
Confidence 65322 22 333343433 24455555 5566665
No 74
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=60.32 E-value=70 Score=26.28 Aligned_cols=65 Identities=9% Similarity=0.107 Sum_probs=48.7
Q ss_pred cCcccccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHH
Q 023557 162 ELIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANED 234 (280)
Q Consensus 162 ~l~~~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~ 234 (280)
++.+....++|.+++....++.+.+.++++.+++.|..+.++.+.. +++...+.. .+|+|-.|-.
T Consensus 134 qi~ea~~~GAD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh~~-------eEl~~A~~~-ga~iIGinnr 198 (272)
T 3tsm_A 134 QVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDE-------AEMERALKL-SSRLLGVNNR 198 (272)
T ss_dssp HHHHHHHTTCSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEECSH-------HHHHHHTTS-CCSEEEEECB
T ss_pred HHHHHHHcCCCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEeCCH-------HHHHHHHhc-CCCEEEECCC
Confidence 3434455789999999544577888999999999999999999764 445555552 7899988843
No 75
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=58.91 E-value=48 Score=23.95 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=46.1
Q ss_pred EEeecC----ChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEE
Q 023557 100 IGAYGD----DQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (280)
Q Consensus 100 ~~~vG~----D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 175 (280)
++.+|- ...|..+.+.|.+.|.+ +. -+++.++. + .|....-+.++++ ...|+++
T Consensus 17 IavIGaS~~~g~~G~~~~~~L~~~G~~---V~-----------~vnp~~~~-i---~G~~~~~s~~el~----~~vDlvi 74 (138)
T 1y81_A 17 IALVGASKNPAKYGNIILKDLLSKGFE---VL-----------PVNPNYDE-I---EGLKCYRSVRELP----KDVDVIV 74 (138)
T ss_dssp EEEETCCSCTTSHHHHHHHHHHHTTCE---EE-----------EECTTCSE-E---TTEECBSSGGGSC----TTCCEEE
T ss_pred EEEEeecCCCCCHHHHHHHHHHHCCCE---EE-----------EeCCCCCe-E---CCeeecCCHHHhC----CCCCEEE
Confidence 556665 67899999999988874 11 12222111 1 1211111233332 3578888
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCe-EEEECCC
Q 023557 176 LRFGMFNFEVIQAAIRIAKQEGLS-VSMDLAS 206 (280)
Q Consensus 176 i~~~~~~~~~~~~~~~~a~~~g~~-v~~D~~~ 206 (280)
+. ++++...++++.+.+.|++ ++++.+.
T Consensus 75 i~---vp~~~v~~v~~~~~~~g~~~i~~~~~~ 103 (138)
T 1y81_A 75 FV---VPPKVGLQVAKEAVEAGFKKLWFQPGA 103 (138)
T ss_dssp EC---SCHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred EE---eCHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 77 3566777777777666664 5555553
No 76
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, , structural genomics, protein structure initiative; 2.60A {Helicobacter pylori}
Probab=58.80 E-value=8.5 Score=34.67 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=39.3
Q ss_pred cCCCcEEEEEecC--CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcC
Q 023557 168 VKGSKWLVLRFGM--FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRG 242 (280)
Q Consensus 168 ~~~~~~v~i~~~~--~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~ 242 (280)
.+++|++.+...+ .+.+ +.++++ .+ ++++|-..- +...+.+.++ ...+++||..|+..|++.
T Consensus 290 ~~~~~a~~iGPGlG~~~~~-l~~~l~----~~-p~VlDADaL-----~~~~~~~~~~--~~~VlTPh~~E~~rL~g~ 353 (475)
T 3k5w_A 290 PNLLSAFALGMGLENIPKD-FNRWLE----LA-PCVLDAGVF-----YHKEILQALE--KEAVLTPHPKEFLSLLNL 353 (475)
T ss_dssp CSSCSEEEECTTCSSCCTT-HHHHHH----HS-CEEEEGGGG-----GSGGGGTTTT--SSEEEECCHHHHHHHHHH
T ss_pred ccCCCEEEEcCCCCCCHHH-HHHHHh----cC-CEEEECccc-----CCchhhhccC--CCEEECCCHHHHHHHhCC
Confidence 4678999998222 1222 333332 25 899998532 1223334444 569999999999999875
No 77
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Probab=56.48 E-value=37 Score=29.04 Aligned_cols=92 Identities=17% Similarity=0.264 Sum_probs=50.2
Q ss_pred CcEEEEEeecCChhHHHHHHHHHhCCC---ccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCC
Q 023557 95 VPCGLIGAYGDDQQGQLFVSNMQFSGV---DVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGS 171 (280)
Q Consensus 95 ~~~~~~~~vG~D~~g~~i~~~L~~~gV---~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (280)
.++.++|.-| ..|..+.+.|++... +...+.. ....+..+.+ . |. .+..+++..+.++++
T Consensus 2 ~~VaIvGatG--~vG~el~~lL~~h~fp~~el~~~~s-~~~aG~~~~~-~--~~-----------~~~~~~~~~~~~~~~ 64 (344)
T 3tz6_A 2 LSIGIVGATG--QVGQVMRTLLDERDFPASAVRFFAS-ARSQGRKLAF-R--GQ-----------EIEVEDAETADPSGL 64 (344)
T ss_dssp EEEEEETTTS--HHHHHHHHHHHHTTCCEEEEEEEEC-TTTSSCEEEE-T--TE-----------EEEEEETTTSCCTTC
T ss_pred CEEEEECCCC--hHHHHHHHHHHhCCCCceEEEEEEC-cccCCCceee-c--CC-----------ceEEEeCCHHHhccC
Confidence 3444444444 579999999998642 2322221 1122333221 1 11 111122222345788
Q ss_pred cEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 172 KWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 172 ~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
|+++++. +.....+..+...+.|. .++|.++.
T Consensus 65 Dvvf~a~---~~~~s~~~a~~~~~~G~-~vID~Sa~ 96 (344)
T 3tz6_A 65 DIALFSA---GSAMSKVQAPRFAAAGV-TVIDNSSA 96 (344)
T ss_dssp SEEEECS---CHHHHHHHHHHHHHTTC-EEEECSST
T ss_pred CEEEECC---ChHHHHHHHHHHHhCCC-EEEECCCc
Confidence 9998883 45566677777777787 57888864
No 78
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=52.31 E-value=38 Score=27.51 Aligned_cols=68 Identities=12% Similarity=0.129 Sum_probs=51.1
Q ss_pred CcccccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCC-CceEEEcCHHHHHH
Q 023557 163 LIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESG-DVDLCFANEDEAAE 238 (280)
Q Consensus 163 l~~~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~-~~dil~~N~~E~~~ 238 (280)
+.+....++|++.+.....+.+.+.++++.+++.|..+.+|.+.. +++...+. - .+|+|-.|-.++..
T Consensus 116 i~ea~~~GAD~ilLi~a~l~~~~l~~l~~~a~~lGl~~lvEv~~~-------eE~~~A~~-l~g~~iIGinnr~l~t 184 (251)
T 1i4n_A 116 VKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSR-------EDLEKVFS-VIRPKIIGINTRDLDT 184 (251)
T ss_dssp HHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEECSH-------HHHHHHHT-TCCCSEEEEECBCTTT
T ss_pred HHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHcCCeEEEEeCCH-------HHHHHHHh-cCCCCEEEEeCccccc
Confidence 333456789999999544577889999999999999999999864 44555555 2 58999888766543
No 79
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=51.87 E-value=32 Score=25.03 Aligned_cols=115 Identities=7% Similarity=0.001 Sum_probs=57.3
Q ss_pred eecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEEecCC
Q 023557 102 AYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMF 181 (280)
Q Consensus 102 ~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~ 181 (280)
.+|....|..+.+.|.+.|.++..+...+......+.-.-+.|-..+ .+.. .+++.+....++++|+|++...
T Consensus 8 I~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i---~gd~--~~~~~l~~a~i~~ad~vi~~~~-- 80 (153)
T 1id1_A 8 VCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVI---PGDS--NDSSVLKKAGIDRCRAILALSD-- 80 (153)
T ss_dssp EECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEE---ESCT--TSHHHHHHHTTTTCSEEEECSS--
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEE---EcCC--CCHHHHHHcChhhCCEEEEecC--
Confidence 34567899999999998887765444321000000000001222221 1211 1233333334788999988853
Q ss_pred CHHHHHHHHHHHHHC--CCeEEEECCChHHHhhhhhHHHhhccCCCceEEEc
Q 023557 182 NFEVIQAAIRIAKQE--GLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFA 231 (280)
Q Consensus 182 ~~~~~~~~~~~a~~~--g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~ 231 (280)
+.+....+...+++. ..+++.-...+ .+.+.+.. + .+|.++.
T Consensus 81 ~d~~n~~~~~~a~~~~~~~~ii~~~~~~----~~~~~l~~-~---G~~~vi~ 124 (153)
T 1id1_A 81 NDADNAFVVLSAKDMSSDVKTVLAVSDS----KNLNKIKM-V---HPDIILS 124 (153)
T ss_dssp CHHHHHHHHHHHHHHTSSSCEEEECSSG----GGHHHHHT-T---CCSEEEC
T ss_pred ChHHHHHHHHHHHHHCCCCEEEEEECCH----HHHHHHHH-c---CCCEEEc
Confidence 334444555555554 34677766654 33333433 2 5775543
No 80
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=51.64 E-value=20 Score=29.32 Aligned_cols=65 Identities=9% Similarity=0.034 Sum_probs=49.0
Q ss_pred ccccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHH
Q 023557 165 AEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAA 237 (280)
Q Consensus 165 ~~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~ 237 (280)
+...-++|.|.+-...++.+.+.++++.|++.|.-+.++.... +++...+.. .+++|=.|-..+.
T Consensus 121 eAr~~GADaILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~-------~El~rAl~~-~a~iIGINNRnL~ 185 (258)
T 4a29_A 121 DAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDE-------NDLDIALRI-GARFIGIMSRDFE 185 (258)
T ss_dssp HHHHHTCSEEEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESSH-------HHHHHHHHT-TCSEEEECSBCTT
T ss_pred HHHHcCCCeeehHHhhcCHHHHHHHHHHHHHHhHHHHHhcchH-------HHHHHHhcC-CCcEEEEeCCCcc
Confidence 4455689998888555688889999999999999999999864 445555442 7899988865544
No 81
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=50.26 E-value=70 Score=23.23 Aligned_cols=100 Identities=11% Similarity=0.070 Sum_probs=50.1
Q ss_pred ChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEEecCCCHHH
Q 023557 106 DQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNFEV 185 (280)
Q Consensus 106 D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~~~~~ 185 (280)
+..|..+.+.|.+.|.++ ..+.+... |+.. .|....-+.++++ ...|++++.. +++.
T Consensus 26 g~~G~~~~~~L~~~G~~v--~~vnp~~~----------g~~i----~G~~~~~sl~el~----~~~Dlvii~v---p~~~ 82 (145)
T 2duw_A 26 DRPSYRVMKYLLDQGYHV--IPVSPKVA----------GKTL----LGQQGYATLADVP----EKVDMVDVFR---NSEA 82 (145)
T ss_dssp TSHHHHHHHHHHHHTCCE--EEECSSST----------TSEE----TTEECCSSTTTCS----SCCSEEECCS---CSTH
T ss_pred CChHHHHHHHHHHCCCEE--EEeCCccc----------cccc----CCeeccCCHHHcC----CCCCEEEEEe---CHHH
Confidence 568999999999888641 11221110 1211 1211111223332 3578888773 3345
Q ss_pred HHHHHHHHHHCCC-eEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHH
Q 023557 186 IQAAIRIAKQEGL-SVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANED 234 (280)
Q Consensus 186 ~~~~~~~a~~~g~-~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~ 234 (280)
..++++.+.+.|+ .++++++.. .+++.+..+.....++=+|--
T Consensus 83 v~~v~~~~~~~g~~~i~i~~~~~------~~~l~~~a~~~Gi~~igpnc~ 126 (145)
T 2duw_A 83 AWGVAQEAIAIGAKTLWLQLGVI------NEQAAVLAREAGLSVVMDRCP 126 (145)
T ss_dssp HHHHHHHHHHHTCCEEECCTTCC------CHHHHHHHHTTTCEEECSCCH
T ss_pred HHHHHHHHHHcCCCEEEEcCChH------HHHHHHHHHHcCCEEEcCCee
Confidence 5555555555564 466666542 344444444224566656643
No 82
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=48.30 E-value=50 Score=23.56 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=55.6
Q ss_pred EeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEEecC
Q 023557 101 GAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGM 180 (280)
Q Consensus 101 ~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~ 180 (280)
..+|-...|..+.+.|.+.|.++..+...+..-. .+ ...|-..+. +.. .+++.+...-+.++|++++...
T Consensus 11 iIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~---~~-~~~g~~~i~---gd~--~~~~~l~~a~i~~ad~vi~~~~- 80 (140)
T 3fwz_A 11 LLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVD---EL-RERGVRAVL---GNA--ANEEIMQLAHLECAKWLILTIP- 80 (140)
T ss_dssp EEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHH---HH-HHTTCEEEE---SCT--TSHHHHHHTTGGGCSEEEECCS-
T ss_pred EEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHH---HH-HHcCCCEEE---CCC--CCHHHHHhcCcccCCEEEEECC-
Confidence 3445567888888888888876554443321100 00 012222211 111 1222222224678899988843
Q ss_pred CCHHHHHHHHHHHHHC--CCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHH
Q 023557 181 FNFEVIQAAIRIAKQE--GLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDE 235 (280)
Q Consensus 181 ~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E 235 (280)
+......++..+++. +.+++.=.... .+.+.|.+ + .+|.++.-+.+
T Consensus 81 -~~~~n~~~~~~a~~~~~~~~iiar~~~~----~~~~~l~~-~---G~d~vi~p~~~ 128 (140)
T 3fwz_A 81 -NGYEAGEIVASARAKNPDIEIIARAHYD----DEVAYITE-R---GANQVVMGERE 128 (140)
T ss_dssp -CHHHHHHHHHHHHHHCSSSEEEEEESSH----HHHHHHHH-T---TCSEEEEHHHH
T ss_pred -ChHHHHHHHHHHHHHCCCCeEEEEECCH----HHHHHHHH-C---CCCEEECchHH
Confidence 233333344445543 45565544443 33444444 2 57765544443
No 83
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A
Probab=46.40 E-value=1e+02 Score=26.56 Aligned_cols=92 Identities=15% Similarity=0.271 Sum_probs=50.0
Q ss_pred cEEEEEeecCChhHHHHHHHHHhCCCccceee--eCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcE
Q 023557 96 PCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLR--MKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKW 173 (280)
Q Consensus 96 ~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~--~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (280)
++.++|.-| ..|..+.+.|.+.+.....+. ......+..+.+ .|. .+..++++.+.++++|+
T Consensus 4 kVaIvGATG--~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~---~~~-----------~~~~~~~~~~~~~~~Dv 67 (366)
T 3pwk_A 4 TVAVVGATG--AVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKF---KDQ-----------DITIEETTETAFEGVDI 67 (366)
T ss_dssp EEEEETTTS--HHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEE---TTE-----------EEEEEECCTTTTTTCSE
T ss_pred EEEEECCCC--hHHHHHHHHHhcCCCCcEEEEEEEccccCCCccee---cCC-----------CceEeeCCHHHhcCCCE
Confidence 444444444 579999999998654322221 111122222221 111 11112222234578999
Q ss_pred EEEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 174 LVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 174 v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
++++. +.....+......+.|.+ ++|.++.
T Consensus 68 vf~a~---~~~~s~~~a~~~~~~G~~-vIDlSa~ 97 (366)
T 3pwk_A 68 ALFSA---GSSTSAKYAPYAVKAGVV-VVDNTSY 97 (366)
T ss_dssp EEECS---CHHHHHHHHHHHHHTTCE-EEECSST
T ss_pred EEECC---ChHhHHHHHHHHHHCCCE-EEEcCCc
Confidence 98883 455666777777777874 6888864
No 84
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=43.67 E-value=31 Score=28.37 Aligned_cols=63 Identities=11% Similarity=0.187 Sum_probs=43.9
Q ss_pred CcccccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCH
Q 023557 163 LIAEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANE 233 (280)
Q Consensus 163 l~~~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~ 233 (280)
+......++|.|++....++.+.+.++++.+++.|..++++.++.. ++...+.. .+|++-.|-
T Consensus 128 v~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~e-------e~~~A~~~-Gad~IGv~~ 190 (272)
T 3qja_A 128 IHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQ-------EADRALKA-GAKVIGVNA 190 (272)
T ss_dssp HHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHH-------HHHHHHHH-TCSEEEEES
T ss_pred HHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHH-------HHHHHHHC-CCCEEEECC
Confidence 4444457899999973334677788899999999999999997652 22222221 688888773
No 85
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=42.69 E-value=88 Score=27.17 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=23.3
Q ss_pred CCcEEEEEe--cC-CCHHHHHHHHHHHHH--CCCeEEEECCC
Q 023557 170 GSKWLVLRF--GM-FNFEVIQAAIRIAKQ--EGLSVSMDLAS 206 (280)
Q Consensus 170 ~~~~v~i~~--~~-~~~~~~~~~~~~a~~--~g~~v~~D~~~ 206 (280)
+.++|++.. +. -...-+.++.+.+++ .|..+++|-..
T Consensus 167 ~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~ 208 (415)
T 2fq6_A 167 NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTW 208 (415)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTT
T ss_pred CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCC
Confidence 456777762 11 011124677788888 99999999753
No 86
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=42.22 E-value=56 Score=25.59 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=57.1
Q ss_pred EeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEEecC
Q 023557 101 GAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGM 180 (280)
Q Consensus 101 ~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~ 180 (280)
-.+|....|..+.+.|.+.|. +..+...+ ..... .. .+-..+ .+.. .+++.+....++++|.+++...
T Consensus 13 iI~G~G~~G~~la~~L~~~g~-v~vid~~~--~~~~~--~~-~~~~~i---~gd~--~~~~~l~~a~i~~ad~vi~~~~- 80 (234)
T 2aef_A 13 VICGWSESTLECLRELRGSEV-FVLAEDEN--VRKKV--LR-SGANFV---HGDP--TRVSDLEKANVRGARAVIVDLE- 80 (234)
T ss_dssp EEESCCHHHHHHHHHSTTSEE-EEEESCGG--GHHHH--HH-TTCEEE---ESCT--TCHHHHHHTTCTTCSEEEECCS-
T ss_pred EEECCChHHHHHHHHHHhCCe-EEEEECCH--HHHHH--Hh-cCCeEE---EcCC--CCHHHHHhcCcchhcEEEEcCC-
Confidence 344667899999999987765 33222221 11000 00 121111 1211 1233333334788999988853
Q ss_pred CCHHHHHHHHHHHHHCCC--eEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHH
Q 023557 181 FNFEVIQAAIRIAKQEGL--SVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDE 235 (280)
Q Consensus 181 ~~~~~~~~~~~~a~~~g~--~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E 235 (280)
+.+....+...+++.+. .++.....+ .+.+.+.. + .+|.++.-..+
T Consensus 81 -~d~~n~~~~~~a~~~~~~~~iia~~~~~----~~~~~l~~-~---G~~~vi~p~~~ 128 (234)
T 2aef_A 81 -SDSETIHCILGIRKIDESVRIIAEAERY----ENIEQLRM-A---GADQVISPFVI 128 (234)
T ss_dssp -CHHHHHHHHHHHHHHCSSSEEEEECSSG----GGHHHHHH-H---TCSEEECHHHH
T ss_pred -CcHHHHHHHHHHHHHCCCCeEEEEECCH----hHHHHHHH-C---CCCEEECHHHH
Confidence 33444455556666553 677777654 23333333 2 56655443333
No 87
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=42.01 E-value=1.4e+02 Score=24.20 Aligned_cols=92 Identities=16% Similarity=0.157 Sum_probs=50.4
Q ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEE---CCChHHHhhhhhHHHhhccCCCceEEEc-----CHHHHHHHhc
Q 023557 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMD---LASFEMVRNFRTPLLQLLESGDVDLCFA-----NEDEAAELVR 241 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D---~~~~~~~~~~~~~l~~~l~~~~~dil~~-----N~~E~~~l~~ 241 (280)
.+|++=+... .+.+...++++.+++.+.+++.- +......+.....+.+... ..+|++++ |.++...++
T Consensus 113 ~~d~iDvEl~-~~~~~~~~l~~~a~~~~~kiI~S~Hdf~~TP~~~el~~~~~~~~~-~gaDIvKia~~~~~~~D~l~Ll- 189 (258)
T 4h3d_A 113 LVDLIDVELF-MGDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQE-LGADLPKIAVMPQNEKDVLVLL- 189 (258)
T ss_dssp CCSEEEEEGG-GCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHH-TTCSEEEEEECCSSHHHHHHHH-
T ss_pred CchhhHHhhh-ccHHHHHHHHHHHHhCCCEEEEEEecCCCCCCHHHHHHHHHHHHH-hCCCEEEEEEccCCHHHHHHHH-
Confidence 3788777743 36777888888888888888763 3321101122223333333 25799886 222222221
Q ss_pred CCCCCcHHHHHHHH-h--cCCCEEEEEcCCCceE
Q 023557 242 GEENADSEAALEFL-A--KRCQWAVVTLGPNGCI 272 (280)
Q Consensus 242 ~~~~~~~~~~~~~l-~--~~~~~vvvT~G~~Ga~ 272 (280)
.+...+ . ...+.+.+.+|+.|.+
T Consensus 190 --------~~~~~~~~~~~~~P~I~~~MG~~G~~ 215 (258)
T 4h3d_A 190 --------EATNEMFKIYADRPIITMSMSGMGVI 215 (258)
T ss_dssp --------HHHHHHHHHTCSSCBEEEECTGGGGG
T ss_pred --------HHHHHHHHhcCCCCEEEEeCCCCChH
Confidence 111111 1 2456888999998853
No 88
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=41.52 E-value=33 Score=24.42 Aligned_cols=77 Identities=5% Similarity=-0.035 Sum_probs=51.4
Q ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHHHhcCCCCCcHH
Q 023557 170 GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAELVRGEENADSE 249 (280)
Q Consensus 170 ~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~l~~~~~~~~~~ 249 (280)
.++++..+.. ++.+.+..+.+..+..++.++.|+.... +..+..+.+.++ .+...+..+.+. |.. ..+.+
T Consensus 26 ~~~iI~t~Gs-i~~~~l~~I~~~~~~r~VIi~TD~D~~G--ekIRk~i~~~lp--~~~hafi~r~~~----gVE-~a~~~ 95 (119)
T 2fcj_A 26 PVVIVCTNGT-ISDARLEELADELEGYDVYLLADADEAG--EKLRRQFRRMFP--EAEHLYIDRAYR----EVA-AAPIW 95 (119)
T ss_dssp CCEEEECCSC-CCHHHHHHHHHHTTTSEEEEECCSSHHH--HHHHHHHHHHCT--TSEEECCCTTTC----STT-TSCHH
T ss_pred CCCEEEeCCc-cCHHHHHHHHHHhcCCCEEEEECCCccH--HHHHHHHHHHCC--CCcEEeccCCcc----Ccc-cCCHH
Confidence 5666655544 6777777777777777877777886432 467778888888 888888888764 432 23455
Q ss_pred HHHHHHh
Q 023557 250 AALEFLA 256 (280)
Q Consensus 250 ~~~~~l~ 256 (280)
...+.|+
T Consensus 96 ~I~~aL~ 102 (119)
T 2fcj_A 96 HLAQVLL 102 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 89
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*
Probab=41.43 E-value=1.7e+02 Score=25.07 Aligned_cols=37 Identities=16% Similarity=0.072 Sum_probs=27.4
Q ss_pred cCCCcEEEEEecCCCHHHHHHHHHHHHHCCC-eEEEECCCh
Q 023557 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGL-SVSMDLASF 207 (280)
Q Consensus 168 ~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~-~v~~D~~~~ 207 (280)
++++|+++++. +.....++.....+.|. .+++|.++.
T Consensus 63 ~~~~DvVf~a~---g~~~s~~~a~~~~~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 63 LKALDIIVTCQ---GGDYTNEIYPKLRESGWQGYWIDAASS 100 (367)
T ss_dssp HHTCSEEEECS---CHHHHHHHHHHHHHTTCCCEEEECSST
T ss_pred hcCCCEEEECC---CchhHHHHHHHHHHCCCCEEEEcCChh
Confidence 46899998883 45566677777778886 589998764
No 90
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=40.50 E-value=1e+02 Score=22.22 Aligned_cols=98 Identities=7% Similarity=0.007 Sum_probs=49.9
Q ss_pred ChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCC--CceeeeecCCcCCCCCcccCcccccCCCcEEEEEecCCCH
Q 023557 106 DQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDAS--GNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMFNF 183 (280)
Q Consensus 106 D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~--g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~~~ 183 (280)
+..|..+.+.|.+.|.++. -+++. ++. + .|....-+.++++ ...|++++. +++
T Consensus 26 g~~G~~~~~~l~~~G~~v~--------------~vnp~~~~~~-i---~G~~~~~sl~el~----~~vDlavi~---vp~ 80 (140)
T 1iuk_A 26 SRPAHYVPRYLREQGYRVL--------------PVNPRFQGEE-L---FGEEAVASLLDLK----EPVDILDVF---RPP 80 (140)
T ss_dssp TSHHHHHHHHHHHTTCEEE--------------EECGGGTTSE-E---TTEECBSSGGGCC----SCCSEEEEC---SCH
T ss_pred CChHHHHHHHHHHCCCEEE--------------EeCCCcccCc-C---CCEEecCCHHHCC----CCCCEEEEE---eCH
Confidence 4688999999999887411 12222 211 1 1111111223332 256887776 356
Q ss_pred HHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCH
Q 023557 184 EVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANE 233 (280)
Q Consensus 184 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~ 233 (280)
+...++++.+.+.|++.++-..+. ..+++.+..+.....++-+|-
T Consensus 81 ~~~~~v~~~~~~~gi~~i~~~~g~-----~~~~~~~~a~~~Gir~vgpnc 125 (140)
T 1iuk_A 81 SALMDHLPEVLALRPGLVWLQSGI-----RHPEFEKALKEAGIPVVADRC 125 (140)
T ss_dssp HHHTTTHHHHHHHCCSCEEECTTC-----CCHHHHHHHHHTTCCEEESCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCc-----CHHHHHHHHHHcCCEEEcCCc
Confidence 677777777666666444433221 123444433312466666663
No 91
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=38.62 E-value=1.7e+02 Score=24.24 Aligned_cols=47 Identities=15% Similarity=0.134 Sum_probs=31.6
Q ss_pred CcccCcccccCCCcEEEEEe--c----CCCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 159 QADELIAEDVKGSKWLVLRF--G----MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 159 ~~~~l~~~~~~~~~~v~i~~--~----~~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.+.+....-++..++++.. + ..+.+.+.++++.++++|..+++|-.
T Consensus 139 d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~ 191 (377)
T 3fdb_A 139 NLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEI 191 (377)
T ss_dssp CHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred CHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 34444332223466777761 1 14667789999999999999999964
No 92
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Probab=38.24 E-value=1.7e+02 Score=24.73 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=26.0
Q ss_pred cCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 168 ~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
++++|+|+++. +.....++++.+.+.|.+ ++|.+++
T Consensus 66 ~~~~DvV~~a~---g~~~s~~~a~~~~~aG~k-vId~Sa~ 101 (340)
T 2hjs_A 66 FSSVGLAFFAA---AAEVSRAHAERARAAGCS-VIDLSGA 101 (340)
T ss_dssp GGGCSEEEECS---CHHHHHHHHHHHHHTTCE-EEETTCT
T ss_pred hcCCCEEEEcC---CcHHHHHHHHHHHHCCCE-EEEeCCC
Confidence 46789998883 344556777777788887 5888764
No 93
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=37.79 E-value=21 Score=25.97 Aligned_cols=39 Identities=10% Similarity=0.056 Sum_probs=31.0
Q ss_pred CchHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccc
Q 023557 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVS 124 (280)
Q Consensus 79 GG~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~ 124 (280)
+|.+...+..|+. .|.++.+++.+|.. -.+.|++ ||.+.
T Consensus 65 ~g~g~~~~~~L~~-~gv~~VI~g~iG~~-----a~~~L~~-GI~v~ 103 (136)
T 2re2_A 65 AARGVFMLKSALD-HGANALVLSEIGSP-----GFNFIKN-KMDVY 103 (136)
T ss_dssp SCHHHHHHHHHHH-TTCSEEEESCCBHH-----HHHHHTT-TSEEE
T ss_pred CCccHHHHHHHHH-cCCCEEEECCCCHh-----HHHHHHC-CCEEE
Confidence 5777778888885 99999999998754 4477888 99753
No 94
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=36.92 E-value=1.1e+02 Score=26.47 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=24.3
Q ss_pred CCCcEEEEEec--C-CCHHHHHHHHHHHHHCCCeEEEECCC
Q 023557 169 KGSKWLVLRFG--M-FNFEVIQAAIRIAKQEGLSVSMDLAS 206 (280)
Q Consensus 169 ~~~~~v~i~~~--~-~~~~~~~~~~~~a~~~g~~v~~D~~~ 206 (280)
++.++|++... . -....+.++.+.+++.|+.+++|-..
T Consensus 165 ~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~ 205 (414)
T 3ndn_A 165 VPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVF 205 (414)
T ss_dssp SCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCC
Confidence 35678887721 1 01122557777888999999999753
No 95
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=35.11 E-value=85 Score=27.94 Aligned_cols=66 Identities=6% Similarity=0.040 Sum_probs=50.6
Q ss_pred ccccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHH
Q 023557 165 AEDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAE 238 (280)
Q Consensus 165 ~~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~ 238 (280)
+....++|.+.+.....+.+.+.++++.+++.|..+.++.+.. +++...+.. .+++|-.|-.++..
T Consensus 125 ea~~~GAD~ILLi~a~l~~~~l~~l~~~a~~lgm~~LvEvh~~-------eE~~~A~~l-ga~iIGinnr~L~t 190 (452)
T 1pii_A 125 LARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNE-------EEQERAIAL-GAKVVGINNRDLRD 190 (452)
T ss_dssp HHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSH-------HHHHHHHHT-TCSEEEEESEETTT
T ss_pred HHHHcCCCEEEEEcccCCHHHHHHHHHHHHHcCCeEEEEeCCH-------HHHHHHHHC-CCCEEEEeCCCCCC
Confidence 4456789999999555577889999999999999999999875 344444442 78999998776544
No 96
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=34.78 E-value=1.3e+02 Score=21.72 Aligned_cols=106 Identities=11% Similarity=0.135 Sum_probs=55.2
Q ss_pred cEEEEEeecC-ChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEE
Q 023557 96 PCGLIGAYGD-DQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWL 174 (280)
Q Consensus 96 ~~~~~~~vG~-D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v 174 (280)
++.++|.-.+ +..|..+.+.|.+.|.++ .. +++.++. + .+....-+.++++ ...|++
T Consensus 24 ~iaVVGas~~~g~~G~~~~~~l~~~G~~v--~~------------Vnp~~~~-i---~G~~~y~sl~~l~----~~vDlv 81 (144)
T 2d59_A 24 KIALVGASPKPERDANIVMKYLLEHGYDV--YP------------VNPKYEE-V---LGRKCYPSVLDIP----DKIEVV 81 (144)
T ss_dssp EEEEETCCSCTTSHHHHHHHHHHHTTCEE--EE------------ECTTCSE-E---TTEECBSSGGGCS----SCCSEE
T ss_pred EEEEEccCCCCCchHHHHHHHHHHCCCEE--EE------------ECCCCCe-E---CCeeccCCHHHcC----CCCCEE
Confidence 3444443221 467889999999888741 11 2222211 1 1211111233332 357888
Q ss_pred EEEecCCCHHHHHHHHHHHHHCCCeEEE-ECCChHHHhhhhhHHHhhccCCCceEEEcC
Q 023557 175 VLRFGMFNFEVIQAAIRIAKQEGLSVSM-DLASFEMVRNFRTPLLQLLESGDVDLCFAN 232 (280)
Q Consensus 175 ~i~~~~~~~~~~~~~~~~a~~~g~~v~~-D~~~~~~~~~~~~~l~~~l~~~~~dil~~N 232 (280)
++. ++.+....+++.+.+.|++.++ ..+. ..+++.+..+.....++=+|
T Consensus 82 vi~---vp~~~~~~vv~~~~~~gi~~i~~~~g~------~~~~l~~~a~~~Gi~vvGpn 131 (144)
T 2d59_A 82 DLF---VKPKLTMEYVEQAIKKGAKVVWFQYNT------YNREASKKADEAGLIIVANR 131 (144)
T ss_dssp EEC---SCHHHHHHHHHHHHHHTCSEEEECTTC------CCHHHHHHHHHTTCEEEESC
T ss_pred EEE---eCHHHHHHHHHHHHHcCCCEEEECCCc------hHHHHHHHHHHcCCEEEcCC
Confidence 887 4667777888877777776544 3332 12344444331245666566
No 97
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=34.71 E-value=1.5e+02 Score=22.67 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEeecCChhHHHHHHHHHhCCCcc
Q 023557 99 LIGAYGDDQQGQLFVSNMQFSGVDV 123 (280)
Q Consensus 99 ~~~~vG~D~~g~~i~~~L~~~gV~~ 123 (280)
-++.+|....|..+...|.+.|.++
T Consensus 21 ~I~iiG~G~mG~~la~~l~~~g~~V 45 (209)
T 2raf_A 21 EITIFGKGNMGQAIGHNFEIAGHEV 45 (209)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEE
Confidence 3667778889999999998888544
No 98
>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A
Probab=33.77 E-value=2.2e+02 Score=24.08 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=26.4
Q ss_pred CCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 169 ~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
+++|+++++. +.....++.+.+.+.|.+ ++|.++.
T Consensus 74 ~~~Dvvf~a~---p~~~s~~~~~~~~~~g~~-vIDlSa~ 108 (337)
T 3dr3_A 74 PGVDVVFLAT---AHEVSHDLAPQFLEAGCV-VFDLSGA 108 (337)
T ss_dssp TTCSEEEECS---CHHHHHHHHHHHHHTTCE-EEECSST
T ss_pred cCCCEEEECC---ChHHHHHHHHHHHHCCCE-EEEcCCc
Confidence 7899998883 556667777777788875 6888875
No 99
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*
Probab=33.02 E-value=1.6e+02 Score=24.87 Aligned_cols=89 Identities=16% Similarity=0.172 Sum_probs=48.0
Q ss_pred EEeec-CChhHHHHHHHHHhCC---CccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEE
Q 023557 100 IGAYG-DDQQGQLFVSNMQFSG---VDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLV 175 (280)
Q Consensus 100 ~~~vG-~D~~g~~i~~~L~~~g---V~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 175 (280)
++.+| ....|+.+.+.|.+.+ ++...+... ...+..+. +. +....+ .+++.+.++++|+++
T Consensus 6 V~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~-~~~G~~~~-~~--~~~i~~-----------~~~~~~~~~~vDvVf 70 (336)
T 2r00_A 6 VAIFGATGAVGETMLEVLQEREFPVDELFLLASE-RSEGKTYR-FN--GKTVRV-----------QNVEEFDWSQVHIAL 70 (336)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECT-TTTTCEEE-ET--TEEEEE-----------EEGGGCCGGGCSEEE
T ss_pred EEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECC-CCCCCcee-ec--CceeEE-----------ecCChHHhcCCCEEE
Confidence 55666 6789999999998864 333333211 11222211 11 221111 111112235789998
Q ss_pred EEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 176 LRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 176 i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
++. +.....+.++...+.|. +++|.++.
T Consensus 71 ~a~---g~~~s~~~a~~~~~~G~-~vId~s~~ 98 (336)
T 2r00_A 71 FSA---GGELSAKWAPIAAEAGV-VVIDNTSH 98 (336)
T ss_dssp ECS---CHHHHHHHHHHHHHTTC-EEEECSST
T ss_pred ECC---CchHHHHHHHHHHHcCC-EEEEcCCc
Confidence 883 34455666667777787 56788764
No 100
>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}
Probab=32.67 E-value=1e+02 Score=20.68 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeee
Q 023557 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR 149 (280)
Q Consensus 109 g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~ 149 (280)
=+.+.+.|++.|+....-........+.+.+.|++|.+.-+
T Consensus 85 v~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel 125 (127)
T 3e5d_A 85 VDELTEKLRQDGFAIAGEPRMTGDGYYESVVLDPEGNRIEI 125 (127)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred HHHHHHHHHHcCCeEecCcccCCCCcEEEEEECCCCCEEEE
Confidence 45777778999998754332222223556688999987544
No 101
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=30.84 E-value=2.2e+02 Score=23.26 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=50.9
Q ss_pred CcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEE---CCChHHHhhhhhHHHhhccCCCceEEEc-----CHHHHHHHhcC
Q 023557 171 SKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMD---LASFEMVRNFRTPLLQLLESGDVDLCFA-----NEDEAAELVRG 242 (280)
Q Consensus 171 ~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D---~~~~~~~~~~~~~l~~~l~~~~~dil~~-----N~~E~~~l~~~ 242 (280)
+|++=+... .+.+...++++.+++.+.+|+.- +......+.+...+.+.... .+|++++ +.++...++
T Consensus 134 ~dyIDvEl~-~~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~~~-GaDIvKia~~a~s~~Dvl~Ll-- 209 (276)
T 3o1n_A 134 VDMIDLELF-TGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQEL-GADIPKIAVMPQTKADVLTLL-- 209 (276)
T ss_dssp CSEEEEEGG-GCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHT-TCSEEEEEECCSSHHHHHHHH--
T ss_pred CCEEEEECc-CCHHHHHHHHHHHHhCCCEEEEEeecCCCCcCHHHHHHHHHHHHHc-CCCEEEEEecCCChHHHHHHH--
Confidence 788877743 36778888888888889888763 32111112233333343332 6899987 122222221
Q ss_pred CCCCcHHHHHHHHh---cCCCEEEEEcCCCce
Q 023557 243 EENADSEAALEFLA---KRCQWAVVTLGPNGC 271 (280)
Q Consensus 243 ~~~~~~~~~~~~l~---~~~~~vvvT~G~~Ga 271 (280)
.+...+. ...+.+.+-+|+.|.
T Consensus 210 -------~~~~~~~~~~~~~PlIa~~MG~~G~ 234 (276)
T 3o1n_A 210 -------TATVEMQERYADRPIITMSMSKTGV 234 (276)
T ss_dssp -------HHHHHHHHHTCCSCCEEEECSGGGT
T ss_pred -------HHHHHHHhcCCCCCEEEEECCCchh
Confidence 1111111 245788899999884
No 102
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=30.82 E-value=1.6e+02 Score=21.73 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=22.8
Q ss_pred cEEEEE-ecC-CCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 172 KWLVLR-FGM-FNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 172 ~~v~i~-~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
+.|.++ ... +.++.+.++++.+++.|..+.+..++.
T Consensus 5 ~~v~~tGGEPll~~~~~~~l~~~~~~~g~~~~l~TNG~ 42 (182)
T 3can_A 5 GGVTFCGGEPLLHPEFLIDILKRCGQQGIHRAVDTTLL 42 (182)
T ss_dssp CCEEECSSTGGGSHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred CEEEEEcccccCCHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 345555 221 345666677777777787777777654
No 103
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=30.29 E-value=1.2e+02 Score=26.38 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=21.8
Q ss_pred CCcEEEEEec--C-CCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 170 GSKWLVLRFG--M-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 170 ~~~~v~i~~~--~-~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.++|++... . -....+.++.+.|++.|..+++|-.
T Consensus 167 ~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a 205 (430)
T 3ri6_A 167 TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTT 205 (430)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECT
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 4567776621 1 0011244677778888999999964
No 104
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=30.25 E-value=1.5e+02 Score=21.23 Aligned_cols=97 Identities=12% Similarity=-0.016 Sum_probs=48.6
Q ss_pred EeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEEecC
Q 023557 101 GAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGM 180 (280)
Q Consensus 101 ~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~ 180 (280)
..+|....|..+.+.|.+.|.++..+...+..... +....|-..+. +.. ..++.+....+.++|+|++...
T Consensus 23 ~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~---~~~~~g~~~~~---~d~--~~~~~l~~~~~~~ad~Vi~~~~- 93 (155)
T 2g1u_A 23 VIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHR---LNSEFSGFTVV---GDA--AEFETLKECGMEKADMVFAFTN- 93 (155)
T ss_dssp EEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGG---SCTTCCSEEEE---SCT--TSHHHHHTTTGGGCSEEEECSS-
T ss_pred EEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH---HHhcCCCcEEE---ecC--CCHHHHHHcCcccCCEEEEEeC-
Confidence 34456779999999999888765544333211100 00011211111 111 1122222222567899988843
Q ss_pred CCHHHHHHHHHHHHH-CC-CeEEEECCCh
Q 023557 181 FNFEVIQAAIRIAKQ-EG-LSVSMDLASF 207 (280)
Q Consensus 181 ~~~~~~~~~~~~a~~-~g-~~v~~D~~~~ 207 (280)
+......+...++. .+ ..++......
T Consensus 94 -~~~~~~~~~~~~~~~~~~~~iv~~~~~~ 121 (155)
T 2g1u_A 94 -DDSTNFFISMNARYMFNVENVIARVYDP 121 (155)
T ss_dssp -CHHHHHHHHHHHHHTSCCSEEEEECSSG
T ss_pred -CcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 34444555556665 44 4566666654
No 105
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=30.17 E-value=94 Score=24.67 Aligned_cols=58 Identities=9% Similarity=0.085 Sum_probs=39.9
Q ss_pred ccCCCcEEEEEecC-CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcC
Q 023557 167 DVKGSKWLVLRFGM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFAN 232 (280)
Q Consensus 167 ~~~~~~~v~i~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N 232 (280)
.-.++|++.+.... .+++.+.++++.+++.|..+..|..... +...... ..+|+|..|
T Consensus 98 ~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~e-------ea~~a~~-~Gad~Ig~~ 156 (229)
T 3q58_A 98 AQAGADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVN-------EGISCHQ-KGIEFIGTT 156 (229)
T ss_dssp HHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHH-------HHHHHHH-TTCSEEECT
T ss_pred HHcCCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHH-------HHHHHHh-CCCCEEEec
Confidence 34588999888332 2456778888999999999999997652 2233333 278999644
No 106
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Probab=29.87 E-value=2.4e+02 Score=24.19 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=28.3
Q ss_pred cccCCCcEEEEEecCCCHHHHHHHHHHHHHCCC-eEEEECCCh
Q 023557 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGL-SVSMDLASF 207 (280)
Q Consensus 166 ~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~-~v~~D~~~~ 207 (280)
+.++++|+++++. +.....++.....+.|. .+++|.++.
T Consensus 60 ~~~~~~Dvvf~a~---~~~~s~~~~~~~~~~G~k~~VID~ss~ 99 (370)
T 3pzr_A 60 ESLKQLDAVITCQ---GGSYTEKVYPALRQAGWKGYWIDAAST 99 (370)
T ss_dssp HHHTTCSEEEECS---CHHHHHHHHHHHHHTTCCCEEEECSST
T ss_pred hHhccCCEEEECC---ChHHHHHHHHHHHHCCCCEEEEeCCch
Confidence 3467899998883 45556667777777787 588999863
No 107
>2p7o_A Glyoxalase family protein; fosfomycin resistance protein, Mn binding, antibiotic resist metal binding protein, hydrolase; 1.44A {Listeria monocytogenes} PDB: 2p7k_A 2p7l_A 2p7m_A 2p7p_A 2p7q_A
Probab=29.31 E-value=91 Score=21.29 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecC
Q 023557 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCL 152 (280)
Q Consensus 109 g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~ 152 (280)
=+.+.+.|++.|+............+..+.+.|++|...-+...
T Consensus 79 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 122 (133)
T 2p7o_A 79 VDEYTERIKALGVEMKPERPRVQGEGRSIYFYDFDNHLFELHAG 122 (133)
T ss_dssp HHHHHHHHHHHTCCEECCCCCCTTCCCEEEEECSSSCEEEEECS
T ss_pred HHHHHHHHHHCCCcccCCCccCCCCeeEEEEECCCCCEEEEEcC
Confidence 45666778888987543322111234667788999987766543
No 108
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=29.30 E-value=1e+02 Score=26.28 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=22.8
Q ss_pred CCcEEEEEe--cC-CCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 170 GSKWLVLRF--GM-FNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 170 ~~~~v~i~~--~~-~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+..+|++.. +. -....+.++.+.++++|+.+++|-.
T Consensus 151 ~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~ 189 (392)
T 3qhx_A 151 TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNT 189 (392)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECT
T ss_pred CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECC
Confidence 456777662 11 0111256777788889999999974
No 109
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=29.14 E-value=1e+02 Score=24.50 Aligned_cols=58 Identities=12% Similarity=0.013 Sum_probs=39.8
Q ss_pred ccCCCcEEEEEecC-CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcC
Q 023557 167 DVKGSKWLVLRFGM-FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFAN 232 (280)
Q Consensus 167 ~~~~~~~v~i~~~~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N 232 (280)
.-.++|++.+.... .+++.+.++++.+++.|..+..|..... +..+... ..+|+|..|
T Consensus 98 ~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~e-------ea~~a~~-~Gad~Ig~~ 156 (232)
T 3igs_A 98 AQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVD-------DGLACQR-LGADIIGTT 156 (232)
T ss_dssp HHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHH-------HHHHHHH-TTCSEEECT
T ss_pred HHcCCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHH-------HHHHHHh-CCCCEEEEc
Confidence 34578999888332 2456778888999999999999997652 2233333 278998654
No 110
>3l7t_A SMU.1112C, putative uncharacterized protein; metal binding protein; 1.80A {Streptococcus mutans}
Probab=27.14 E-value=1.2e+02 Score=20.40 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceee
Q 023557 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTM 148 (280)
Q Consensus 109 g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~ 148 (280)
=+.+.+.|++.|+...............+.+.|++|...-
T Consensus 92 ~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie 131 (134)
T 3l7t_A 92 VEASRQELIALGIRVEEVRYDDYTGKKMAFFFDPDGLPLE 131 (134)
T ss_dssp HHHHHHHHHHHTCCCCCCEECTTSCCEEEEEECTTCCEEE
T ss_pred HHHHHHHHHhCCCcccceeccCCCceEEEEEECCCCCEEE
Confidence 3566777889999876443332223456677889987654
No 111
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=27.12 E-value=1.3e+02 Score=24.59 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=18.3
Q ss_pred EEeec-CChhHHHHHHHHHhCCCcc
Q 023557 100 IGAYG-DDQQGQLFVSNMQFSGVDV 123 (280)
Q Consensus 100 ~~~vG-~D~~g~~i~~~L~~~gV~~ 123 (280)
++.+| -...|..+...|.+.|.++
T Consensus 24 I~iIGg~G~mG~~la~~l~~~G~~V 48 (298)
T 2pv7_A 24 IVIVGGYGKLGGLFARYLRASGYPI 48 (298)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCE
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCeE
Confidence 66677 7788888888888877644
No 112
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=25.99 E-value=1.7e+02 Score=25.00 Aligned_cols=48 Identities=17% Similarity=0.069 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHH
Q 023557 181 FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (280)
Q Consensus 181 ~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~ 236 (280)
++.+....+.+.+++.|..++-.+-+.. .-+.+.+ + .+|++++.-.|.
T Consensus 88 l~~e~~~~L~~~~~~~Gi~~~st~~d~~----svd~l~~-~---~v~~~KI~S~~~ 135 (349)
T 2wqp_A 88 LNEEDEIKLKEYVESKGMIFISTLFSRA----AALRLQR-M---DIPAYKIGSGEC 135 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECSHH----HHHHHHH-H---TCSCEEECGGGT
T ss_pred CCHHHHHHHHHHHHHhCCeEEEeeCCHH----HHHHHHh-c---CCCEEEECcccc
Confidence 4678888899999999999988886542 1222222 1 378888765554
No 113
>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2, protein struct initiative, midwest center for structural genomics, oxidore; 1.70A {Enterococcus faecalis}
Probab=25.80 E-value=1.5e+02 Score=19.64 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceee
Q 023557 110 QLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTM 148 (280)
Q Consensus 110 ~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~ 148 (280)
+.+.+.|++.|+...............+.+.|++|.+.-
T Consensus 85 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie 123 (126)
T 2p25_A 85 EEVIAFLNEQGIETEPLRVDDFTGKKMTFFFDPDGLPLE 123 (126)
T ss_dssp HHHHHHHHHTTCCCCCCEECTTTCCEEEEEECTTCCEEE
T ss_pred HHHHHHHHHcCCccccccccCCCCcEEEEEECCCCCEEE
Confidence 456677899999865433322122355667889987654
No 114
>3ghj_A Putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.47A {Uncultured bacterium}
Probab=25.58 E-value=1.1e+02 Score=21.52 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeee
Q 023557 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR 149 (280)
Q Consensus 109 g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~ 149 (280)
=+.+.+.|++.|+...............+.+.|++|.+.-+
T Consensus 98 ld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iel 138 (141)
T 3ghj_A 98 IEPLKKALESKGVSVHGPVNQEWMQAVSLYFADPNGHALEF 138 (141)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEGGGTEEEEEEECTTCCEEEE
T ss_pred HHHHHHHHHHCCCeEeCCcccCCCCceEEEEECCCCCEEEE
Confidence 36677779999998763322221235777888999987644
No 115
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=25.45 E-value=1.5e+02 Score=25.26 Aligned_cols=47 Identities=11% Similarity=0.006 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHH
Q 023557 181 FNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDE 235 (280)
Q Consensus 181 ~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E 235 (280)
++.+....+.+.+++.|..++-.+-+.. .-+.+.+ + .+|++++.-.|
T Consensus 75 l~~e~~~~L~~~~~~~Gi~~~st~fD~~----svd~l~~-~---~v~~~KI~S~~ 121 (350)
T 3g8r_A 75 LQPEQMQKLVAEMKANGFKAICTPFDEE----SVDLIEA-H---GIEIIKIASCS 121 (350)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECSHH----HHHHHHH-T---TCCEEEECSSS
T ss_pred CCHHHHHHHHHHHHHcCCcEEeccCCHH----HHHHHHH-c---CCCEEEECccc
Confidence 4778888999999999999988886542 1222222 1 48888876444
No 116
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=25.40 E-value=1e+02 Score=24.88 Aligned_cols=47 Identities=15% Similarity=0.076 Sum_probs=30.9
Q ss_pred cCchHHHHHHHHHhhcCCcEEEEEee---------------cC-----ChhHHHHHHHHHhCCCccce
Q 023557 78 AGGSVTNTIRGLSVGFGVPCGLIGAY---------------GD-----DQQGQLFVSNMQFSGVDVSR 125 (280)
Q Consensus 78 ~GG~~~N~a~~la~~lG~~~~~~~~v---------------G~-----D~~g~~i~~~L~~~gV~~~~ 125 (280)
.|-+|..+|..|++ .|.++.++-.- +- ..+-+.+.+.+++.|+++..
T Consensus 23 ~G~aGl~aA~~l~~-~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 89 (323)
T 3f8d_A 23 LGPAAYGAALYSAR-YMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL 89 (323)
T ss_dssp CSHHHHHHHHHHHH-TTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccHHHHHHHHHHHH-CCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE
Confidence 44466778888886 99999988752 10 12345556667778887543
No 117
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=24.64 E-value=95 Score=27.11 Aligned_cols=112 Identities=14% Similarity=0.067 Sum_probs=61.7
Q ss_pred eecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEEecCC
Q 023557 102 AYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRFGMF 181 (280)
Q Consensus 102 ~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~ 181 (280)
.+|-..+|+.+.+.|.+.|+++..+..++..... ....|...++ |.. .+++.+...-+.++++|++...
T Consensus 9 IiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~----~~~~g~~vi~---GDa--t~~~~L~~agi~~A~~viv~~~-- 77 (413)
T 3l9w_A 9 IAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIET----LRKFGMKVFY---GDA--TRMDLLESAGAAKAEVLINAID-- 77 (413)
T ss_dssp EECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHH----HHHTTCCCEE---SCT--TCHHHHHHTTTTTCSEEEECCS--
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHH----HHhCCCeEEE---cCC--CCHHHHHhcCCCccCEEEECCC--
Confidence 4455779999999999999876554443221000 0112333222 222 1233333334788999988854
Q ss_pred CHHHHHHHHHHHHHCCC--eEEEECCChHHHhhhhhHHHhhccCCCceEEEcC
Q 023557 182 NFEVIQAAIRIAKQEGL--SVSMDLASFEMVRNFRTPLLQLLESGDVDLCFAN 232 (280)
Q Consensus 182 ~~~~~~~~~~~a~~~g~--~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N 232 (280)
+.+....++..+++.+. .|+.=.... .+...|.+ + .+|.++.-
T Consensus 78 ~~~~n~~i~~~ar~~~p~~~Iiara~~~----~~~~~L~~-~---Gad~Vi~~ 122 (413)
T 3l9w_A 78 DPQTNLQLTEMVKEHFPHLQIIARARDV----DHYIRLRQ-A---GVEKPERE 122 (413)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEESSH----HHHHHHHH-T---TCSSCEET
T ss_pred ChHHHHHHHHHHHHhCCCCeEEEEECCH----HHHHHHHH-C---CCCEEECc
Confidence 45666677777777654 565555443 23344443 2 56655543
No 118
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.45 E-value=1.3e+02 Score=21.07 Aligned_cols=43 Identities=12% Similarity=-0.053 Sum_probs=33.7
Q ss_pred ecCchHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCC
Q 023557 77 IAGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSG 120 (280)
Q Consensus 77 ~~GG~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~g 120 (280)
..||..-.+...+.+ -.....+++.+.-+..-+.|++.+++.|
T Consensus 6 ~~~g~~~~~~~~~~~-~~~~~v~V~nLp~~~te~dl~~~F~~~g 48 (123)
T 2dha_A 6 SGGGTSNEVAQFLSK-ENQVIVRMRGLPFTATAEEVVAFFGQHC 48 (123)
T ss_dssp SSCCCCHHHHHHHHC-CSCCEEEECSCCTTCCHHHHHHHHHTTS
T ss_pred CCCCCchhHHhhccC-CCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 456766555555653 5567899999999999999999999987
No 119
>3uh9_A Metallothiol transferase FOSB 2; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol; HET: MSE; 1.60A {Bacillus anthracis}
Probab=24.39 E-value=1.2e+02 Score=21.10 Aligned_cols=43 Identities=9% Similarity=0.063 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeec
Q 023557 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPC 151 (280)
Q Consensus 109 g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~ 151 (280)
=+.+.+.|++.|+....-.......+..+.+.|++|.+.-+..
T Consensus 76 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~ 118 (145)
T 3uh9_A 76 LDHLKEVLIQNDVNILPGRERDERDQRSLYFTDPDGHKFEFHT 118 (145)
T ss_dssp HHHHHHHHHHTTCCBCCCCCCCGGGCCEEEEECTTCCEEEEES
T ss_pred HHHHHHHHHHCCCeEecCCccCCCCeeEEEEEcCCCCEEEEEc
Confidence 4667777899999764322221234566778899998776554
No 120
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=23.74 E-value=1.7e+02 Score=24.41 Aligned_cols=37 Identities=11% Similarity=0.244 Sum_probs=28.0
Q ss_pred CCCcEEEEEe--c----CCCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 169 KGSKWLVLRF--G----MFNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 169 ~~~~~v~i~~--~----~~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
++.+++++.. . ..+.+.+.++++.+++++..+++|-.
T Consensus 167 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~ 209 (396)
T 3jtx_A 167 KRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDEC 209 (396)
T ss_dssp HTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECT
T ss_pred cCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 3567888761 1 14677788899999999999999964
No 121
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=23.42 E-value=4e+02 Score=23.85 Aligned_cols=93 Identities=9% Similarity=0.031 Sum_probs=55.0
Q ss_pred EEEeecCChhHHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeeeecCCcCCCCCcccCcccccCCCcEEEEEe
Q 023557 99 LIGAYGDDQQGQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMRPCLSNAVKIQADELIAEDVKGSKWLVLRF 178 (280)
Q Consensus 99 ~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~ 178 (280)
-+-.+|...+|..+.+.|.+.|.++.-+..++..... -. ..+ .+.. .+.+.+...-++++|.+++..
T Consensus 350 ~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~-------~~-~~i---~gD~--t~~~~L~~agi~~ad~vi~~~ 416 (565)
T 4gx0_A 350 LIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCN-------DH-VVV---YGDA--TVGQTLRQAGIDRASGIIVTT 416 (565)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCC-------SS-CEE---ESCS--SSSTHHHHHTTTSCSEEEECC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhh-------cC-CEE---EeCC--CCHHHHHhcCccccCEEEEEC
Confidence 4556788899999999999999887655554332110 01 111 1222 233444455678999998885
Q ss_pred cCCCHHHHHHHHHHHHHCCC--eEEEECCC
Q 023557 179 GMFNFEVIQAAIRIAKQEGL--SVSMDLAS 206 (280)
Q Consensus 179 ~~~~~~~~~~~~~~a~~~g~--~v~~D~~~ 206 (280)
. +.+....+...+|+.+. +++.=...
T Consensus 417 ~--~d~~ni~~~~~ak~l~~~~~iiar~~~ 444 (565)
T 4gx0_A 417 N--DDSTNIFLTLACRHLHSHIRIVARANG 444 (565)
T ss_dssp S--CHHHHHHHHHHHHHHCSSSEEEEEESS
T ss_pred C--CchHHHHHHHHHHHHCCCCEEEEEECC
Confidence 4 33444455556677664 45444433
No 122
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=23.39 E-value=1.9e+02 Score=20.04 Aligned_cols=68 Identities=22% Similarity=0.163 Sum_probs=42.0
Q ss_pred cccCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHH
Q 023557 166 EDVKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (280)
Q Consensus 166 ~~~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~ 236 (280)
+....-|++++-.. .+.+.+..+++.|+++|.-+++-.+... ...++...+-+++-.+|+-..++.|-
T Consensus 73 erypqldvvvivtt-ddkewikdfieeakergvevfvvynnkd--ddrrkeaqqefrsdgvdvrtvsdkee 140 (162)
T 2l82_A 73 ERYPQLDVVVIVTT-DDKEWIKDFIEEAKERGVEVFVVYNNKD--DDRRKEAQQEFRSDGVDVRTVSDKEE 140 (162)
T ss_dssp HHCTTCCEEEEEEC-CCHHHHHHHHHHHHHTTCEEEEEEECSC--HHHHHHHHHHHCCSSCEEEEESSHHH
T ss_pred HhCCCCcEEEEEec-CcHHHHHHHHHHHHhcCcEEEEEecCCC--chhHHHHHHHhhhcCceeeecCCHHH
Confidence 34456678777743 2688999999999999987765443221 11233333333334788888776553
No 123
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=23.29 E-value=2.6e+02 Score=23.83 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=22.9
Q ss_pred CCcEEEEEe--cCC-CHHHHHHHHHHHHHCCCeEEEECC
Q 023557 170 GSKWLVLRF--GMF-NFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 170 ~~~~v~i~~--~~~-~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+..+|++.. +.. ....+.++.+.|+++|+.+++|-.
T Consensus 152 ~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~ 190 (400)
T 3nmy_A 152 DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNT 190 (400)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECC
Confidence 456777762 110 001256777888899999999975
No 124
>1xqa_A Glyoxalase/bleomycin resistance protein; dioxygenase, structural GEN midwest center for structural genomics, MCSG; HET: P6G; 1.80A {Bacillus cereus atcc 14579} SCOP: d.32.1.2
Probab=23.05 E-value=1.6e+02 Score=19.28 Aligned_cols=38 Identities=8% Similarity=-0.038 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCCccceeeeCCCCceeEEEEEcCCCceeee
Q 023557 109 GQLFVSNMQFSGVDVSRLRMKRGPTGQCVCLVDASGNRTMR 149 (280)
Q Consensus 109 g~~i~~~L~~~gV~~~~v~~~~~~T~~~~~~~~~~g~r~~~ 149 (280)
=+.+.+.|++.|+....... . . +..+.+.||+|.+.-+
T Consensus 74 ~~~~~~~l~~~G~~~~~p~~-~-~-~~~~~~~DPdG~~iel 111 (113)
T 1xqa_A 74 VDKINQRLKEDGFLVEPPKH-A-H-AYTFYVEAPGGFTIEV 111 (113)
T ss_dssp HHHHHHHHHHTTCCCCCCEE-C---CEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHCCCEEecCcC-C-C-cEEEEEECCCCcEEEE
Confidence 35566668999998654322 1 2 5677788999976543
No 125
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=22.93 E-value=86 Score=27.39 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=25.8
Q ss_pred cEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 172 KWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 172 ~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
|+.-++...-..+...++++.|+++|++|++|.-
T Consensus 70 dy~~idp~~Gt~~d~~~lv~~ah~~Gi~vilD~V 103 (424)
T 2dh2_A 70 DLLQIDPNFGSKEDFDSLLQSAKKKSIRVILDLT 103 (424)
T ss_dssp EEEEECGGGCCHHHHHHHHHHHHHTTCEEEEECC
T ss_pred cccccCccCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4444551112578899999999999999999984
No 126
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=22.79 E-value=94 Score=27.58 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHCCCeEEEECC
Q 023557 182 NFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 182 ~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
..+.+.++++.|+++|++|++|.-
T Consensus 80 t~~d~~~Lv~~aH~~Gi~VilD~V 103 (488)
T 1wza_A 80 TLEDFHKLVEAAHQRGIKVIIDLP 103 (488)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEec
Confidence 578899999999999999999984
No 127
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=22.63 E-value=1.9e+02 Score=23.56 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=34.5
Q ss_pred CCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCH
Q 023557 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANE 233 (280)
Q Consensus 169 ~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~ 233 (280)
+.++++..+ .+.+.+.+.++.....-..+..|++.....++.-+...+-+. ..|+++-|.
T Consensus 52 ~Ga~V~i~~---r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G--~iDiLVNNA 111 (273)
T 4fgs_A 52 EGARVFITG---RRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAG--RIDVLFVNA 111 (273)
T ss_dssp TTCEEEEEE---SCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHS--CEEEEEECC
T ss_pred CCCEEEEEE---CCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcC--CCCEEEECC
Confidence 456665555 244555555554433334566788877555444455555554 789888774
No 128
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}
Probab=22.58 E-value=97 Score=26.34 Aligned_cols=37 Identities=11% Similarity=-0.057 Sum_probs=25.7
Q ss_pred ccC-CCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCCh
Q 023557 167 DVK-GSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASF 207 (280)
Q Consensus 167 ~~~-~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 207 (280)
+++ ++|+|+++. +.....++++.+.+.|++ ++|.++.
T Consensus 79 ~~~~~~DvV~~at---p~~~~~~~a~~~~~aG~~-VId~s~~ 116 (354)
T 1ys4_A 79 EEFEDVDIVFSAL---PSDLAKKFEPEFAKEGKL-IFSNASA 116 (354)
T ss_dssp GGGTTCCEEEECC---CHHHHHHHHHHHHHTTCE-EEECCST
T ss_pred HhcCCCCEEEECC---CchHHHHHHHHHHHCCCE-EEECCch
Confidence 335 899999883 444556666777777877 6888764
No 129
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=22.32 E-value=3.4e+02 Score=23.37 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHCCCeEEEECC
Q 023557 181 FNFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 181 ~~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
.+.+.+.++++.+++++..+++|-.
T Consensus 219 ~~~~~l~~i~~l~~~~~~~li~Dea 243 (448)
T 3meb_A 219 FTEAQWKELLPIMKEKKHIAFFDSA 243 (448)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEEES
T ss_pred CCHHHHHHHHHHHHHCCCEEEEecc
Confidence 3567778888888888988888864
No 130
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=22.00 E-value=41 Score=23.54 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=30.2
Q ss_pred cCchHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccc
Q 023557 78 AGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVS 124 (280)
Q Consensus 78 ~GG~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~ 124 (280)
.+|.+...+..|+. .|.++.+++.+|. .-.+.|++.||...
T Consensus 52 ~~g~g~~~~~~l~~-~gv~~vi~~~iG~-----~a~~~L~~~GI~v~ 92 (120)
T 2wfb_A 52 SHGAGINAAQVLAK-SGAGVLLTGYVGP-----KAFQALQAAGIKVG 92 (120)
T ss_dssp SSCHHHHHHHHHHH-HTEEEEECSCCCH-----HHHHHHHHTTCEEE
T ss_pred CCCchHHHHHHHHH-CCCCEEEECCCCH-----hHHHHHHHCCCEEE
Confidence 35666667777875 8999999988764 45677888898753
No 131
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=21.91 E-value=87 Score=27.37 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHCCCeEEEECC
Q 023557 182 NFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 182 ~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.+.+.++++.|+++|++|++|.-
T Consensus 68 t~~df~~lv~~aH~~Gi~VilD~V 91 (441)
T 1lwj_A 68 SEREFKEMIEAFHDSGIKVVLDLP 91 (441)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeC
Confidence 578899999999999999999984
No 132
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=21.66 E-value=1.1e+02 Score=23.55 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=27.9
Q ss_pred CCCcEEEEE-ecCCCHHHHHHHHHHHHHCCCeEE-EEC
Q 023557 169 KGSKWLVLR-FGMFNFEVIQAAIRIAKQEGLSVS-MDL 204 (280)
Q Consensus 169 ~~~~~v~i~-~~~~~~~~~~~~~~~a~~~g~~v~-~D~ 204 (280)
...++++++ .+.++...+..+++.|++.+.+++ +|-
T Consensus 120 tp~s~lIVD~AekLS~kE~~~Lld~A~~~naqvvll~~ 157 (189)
T 2l8b_A 120 TPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDS 157 (189)
T ss_dssp CCCCEEEEEESSSHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCEEEEechhhcCHHHHHHHHHHHHhcCCEEEEeCC
Confidence 566789999 555677888999999999987666 444
No 133
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=21.65 E-value=1.4e+02 Score=23.53 Aligned_cols=48 Identities=6% Similarity=-0.018 Sum_probs=33.4
Q ss_pred cCchHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccceeee
Q 023557 78 AGGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLRM 128 (280)
Q Consensus 78 ~GG~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~~ 128 (280)
.||-|..+|..|++ .|.++.+++.- ....+.+.+.+++.|.+...+..
T Consensus 16 s~GIG~aia~~l~~-~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~ 63 (252)
T 3h7a_A 16 GDYIGAEIAKKFAA-EGFTVFAGRRN--GEKLAPLVAEIEAAGGRIVARSL 63 (252)
T ss_dssp SSHHHHHHHHHHHH-TTCEEEEEESS--GGGGHHHHHHHHHTTCEEEEEEC
T ss_pred CchHHHHHHHHHHH-CCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEEEC
Confidence 35667788889996 99998877662 23456777788877766554443
No 134
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=21.60 E-value=85 Score=28.08 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHCCCeEEEECC
Q 023557 182 NFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 182 ~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+.+.+.++++.|+++|++|++|.-
T Consensus 78 t~~dfk~Lv~~aH~~Gi~VilD~V 101 (549)
T 4aie_A 78 TMADMDELISKAKEHHIKIVMDLV 101 (549)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 577899999999999999999984
No 135
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=21.55 E-value=66 Score=28.21 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHCCCeEEEECC
Q 023557 182 NFEVIQAAIRIAKQEGLSVSMDLA 205 (280)
Q Consensus 182 ~~~~~~~~~~~a~~~g~~v~~D~~ 205 (280)
+++.++++++.|+++|++|++|.-
T Consensus 75 t~~df~~lv~~aH~~Gi~VilD~V 98 (496)
T 4gqr_A 75 NEDEFRNMVTRCNNVGVRIYVDAV 98 (496)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEc
Confidence 678899999999999999999974
No 136
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=20.85 E-value=3.2e+02 Score=21.79 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEE---EECCChHHHhhhhhHHHhhccCCCceEEEcC
Q 023557 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVS---MDLASFEMVRNFRTPLLQLLESGDVDLCFAN 232 (280)
Q Consensus 169 ~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~---~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N 232 (280)
..++++..+ .+.+.+.++.+..++.|..+. +|++....+.+.-+...+-+. ..|+++-|
T Consensus 30 ~Ga~Vv~~~---~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G--~iDiLVNN 91 (254)
T 4fn4_A 30 NDSIVVAVE---LLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYS--RIDVLCNN 91 (254)
T ss_dssp TTCEEEEEE---SCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS--CCCEEEEC
T ss_pred cCCEEEEEE---CCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC--CCCEEEEC
No 137
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=20.74 E-value=4e+02 Score=22.76 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=43.5
Q ss_pred cCCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHHHH
Q 023557 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEAAE 238 (280)
Q Consensus 168 ~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~~~ 238 (280)
+...+++++....-..+...++.+..++.|..+.+|.....+..+++. .+... ...++++.++|+..
T Consensus 296 ~ap~~v~vi~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~k~~~--A~~~g--~p~~iiiG~~e~~~ 362 (401)
T 1evl_A 296 LAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIRE--HTLRR--VPYMLVCGDKEVES 362 (401)
T ss_dssp TCSSCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEECCSSCHHHHHHH--HHHTT--CSEEEEECHHHHHH
T ss_pred CCCeEEEEEecCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH--HHhcC--CCEEEEECcchhhC
Confidence 455678777732223456677788888899999999875433233322 22333 67788889988864
No 138
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=20.65 E-value=1.8e+02 Score=23.36 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=30.8
Q ss_pred CchHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccceee
Q 023557 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLR 127 (280)
Q Consensus 79 GG~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~ 127 (280)
||-|..+|..|++ .|.++.+++ .+...+...+.+++.+.+...+.
T Consensus 41 ~GIG~aia~~la~-~G~~V~~~~---r~~~~~~~~~~~~~~~~~~~~~~ 85 (273)
T 3uf0_A 41 SGIGRAIAHGYAR-AGAHVLAWG---RTDGVKEVADEIADGGGSAEAVV 85 (273)
T ss_dssp SHHHHHHHHHHHH-TTCEEEEEE---SSTHHHHHHHHHHTTTCEEEEEE
T ss_pred cHHHHHHHHHHHH-CCCEEEEEc---CHHHHHHHHHHHHhcCCcEEEEE
Confidence 4556788888886 899887766 34455667777777766555443
No 139
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=20.44 E-value=2.6e+02 Score=20.49 Aligned_cols=59 Identities=19% Similarity=0.112 Sum_probs=31.6
Q ss_pred cCCCcEEEEEecCCCHHHHHHHHHHHHHCC--CeEEEECCChHHHhhhhhHHHhhccCCCceEEEcCHHHH
Q 023557 168 VKGSKWLVLRFGMFNFEVIQAAIRIAKQEG--LSVSMDLASFEMVRNFRTPLLQLLESGDVDLCFANEDEA 236 (280)
Q Consensus 168 ~~~~~~v~i~~~~~~~~~~~~~~~~a~~~g--~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~~N~~E~ 236 (280)
++++|++++... +.+....++..+++.+ ..++...... ...+.+.+ + .+|.++.-..+.
T Consensus 103 ~~~ad~vi~~~~--~~~~~~~~~~~~~~~~~~~~ii~~~~~~----~~~~~l~~-~---G~~~vi~p~~~~ 163 (183)
T 3c85_A 103 TGHVKLVLLAMP--HHQGNQTALEQLQRRNYKGQIAAIAEYP----DQLEGLLE-S---GVDAAFNIYSEA 163 (183)
T ss_dssp CCCCCEEEECCS--SHHHHHHHHHHHHHTTCCSEEEEEESSH----HHHHHHHH-H---TCSEEEEHHHHH
T ss_pred CCCCCEEEEeCC--ChHHHHHHHHHHHHHCCCCEEEEEECCH----HHHHHHHH-c---CCCEEEchHHHH
Confidence 567899988743 3444455556666655 3555554443 22233333 2 567666544443
No 140
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=20.42 E-value=2.6e+02 Score=20.44 Aligned_cols=95 Identities=13% Similarity=0.168 Sum_probs=42.9
Q ss_pred EEEEecCCCHHHHHHHHHHHHH----CCCeEEEECCChH-HHhhhhhHHHhhccCCCceEEEc-CHHH----HHHHhcC-
Q 023557 174 LVLRFGMFNFEVIQAAIRIAKQ----EGLSVSMDLASFE-MVRNFRTPLLQLLESGDVDLCFA-NEDE----AAELVRG- 242 (280)
Q Consensus 174 v~i~~~~~~~~~~~~~~~~a~~----~g~~v~~D~~~~~-~~~~~~~~l~~~l~~~~~dil~~-N~~E----~~~l~~~- 242 (280)
|+.+|. .+|+.+..+++..++ ..+.++|-++... -...+...+.+.++ .+|.++. ...| +..+...
T Consensus 39 vi~Dya-HnP~si~a~l~al~~~~~~~riivvf~~g~~s~r~k~~~~~~~~~~~--~aD~vi~~~~~~~~~~~~~~~~~~ 115 (163)
T 3mvn_A 39 VYDDFA-HHPTAITATIDALRAKVGQQRILAVLEPRSNTMKMGVHKHELATSLQ--DADSVFIYQPPTIEWQVSEVLANL 115 (163)
T ss_dssp EEEECC-CSHHHHHHHHHHHHHHHTTSCEEEEECCC---------CHHHHHHHT--TCSEEEEECC----CCHHHHHTTC
T ss_pred EEEcCC-CCHHHHHHHHHHHHHhcCCCcEEEEECCCCcchhhHHHHHHHHHHHh--cCCEEEEECCCCcccCHHHHHhhC
Confidence 445565 356666666665553 1234455554321 11123345555555 5664433 2111 2222221
Q ss_pred --C--CCCcHHHHHHHHhc--CCCEEEEEcCCCce
Q 023557 243 --E--ENADSEAALEFLAK--RCQWAVVTLGPNGC 271 (280)
Q Consensus 243 --~--~~~~~~~~~~~l~~--~~~~vvvT~G~~Ga 271 (280)
. ...+.+++.+.+.. ...-+|+..|+.+.
T Consensus 116 ~~~~~~~~d~~eai~~~~~~~~~gDvVLv~Gsg~~ 150 (163)
T 3mvn_A 116 AQPAISADDVDELVMRIVQQAKPNDHILIMSNGAF 150 (163)
T ss_dssp CSCEEEESSHHHHHHHHHHHCCTTCEEEEECSSCG
T ss_pred CCCeEEECCHHHHHHHHHHhCCCCCEEEEECCCCH
Confidence 1 02456677665532 33457777888874
No 141
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=20.37 E-value=1.6e+02 Score=23.70 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=30.9
Q ss_pred CchHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHhCCCccceee
Q 023557 79 GGSVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQFSGVDVSRLR 127 (280)
Q Consensus 79 GG~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~~~v~ 127 (280)
||-|..+|..|++ .|.++.+++. +....+.+.+.+++.|.+...+.
T Consensus 42 ~GIG~aia~~la~-~G~~V~~~~r--~~~~~~~~~~~~~~~~~~~~~~~ 87 (276)
T 3r1i_A 42 TGIGKKVALAYAE-AGAQVAVAAR--HSDALQVVADEIAGVGGKALPIR 87 (276)
T ss_dssp SHHHHHHHHHHHH-TTCEEEEEES--SGGGGHHHHHHHHHTTCCCEEEE
T ss_pred CHHHHHHHHHHHH-CCCEEEEEeC--CHHHHHHHHHHHHhcCCeEEEEE
Confidence 4556778888885 8998887766 22345677777777765554443
No 142
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=20.33 E-value=1.4e+02 Score=22.53 Aligned_cols=35 Identities=11% Similarity=-0.150 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhhcCCcEEEEEeecCChhHHHHHHHHHh
Q 023557 81 SVTNTIRGLSVGFGVPCGLIGAYGDDQQGQLFVSNMQF 118 (280)
Q Consensus 81 ~~~N~a~~la~~lG~~~~~~~~vG~D~~g~~i~~~L~~ 118 (280)
.+...+..|.. +|.++...+.++||. +.|++.+++
T Consensus 24 N~~~l~~~L~~-~G~~v~~~~iv~Dd~--~~I~~~l~~ 58 (172)
T 3kbq_A 24 NAAFIGNFLTY-HGYQVRRGFVVMDDL--DEIGWAFRV 58 (172)
T ss_dssp HHHHHHHHHHH-TTCEEEEEEEECSCH--HHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCEEEEEEEeCCCH--HHHHHHHHH
Confidence 34556777775 999999999999984 556665554
No 143
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=20.29 E-value=84 Score=25.01 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=35.1
Q ss_pred CCCcEEEEEecCCCHHHHHHHHHHHHHCCCeEEEECCChHHHhhhhhHHHhhccCCCceEEE
Q 023557 169 KGSKWLVLRFGMFNFEVIQAAIRIAKQEGLSVSMDLASFEMVRNFRTPLLQLLESGDVDLCF 230 (280)
Q Consensus 169 ~~~~~v~i~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~l~~~l~~~~~dil~ 230 (280)
.++|++.+.+.... ....+.++.+++.|+++.+.+++.. -.+.+.+++. .+|++.
T Consensus 79 aGAd~itvh~Ea~~-~~~~~~i~~i~~~G~k~gv~lnp~t----p~~~~~~~l~--~~D~Vl 133 (231)
T 3ctl_A 79 AGADFITLHPETIN-GQAFRLIDEIRRHDMKVGLILNPET----PVEAMKYYIH--KADKIT 133 (231)
T ss_dssp HTCSEEEECGGGCT-TTHHHHHHHHHHTTCEEEEEECTTC----CGGGGTTTGG--GCSEEE
T ss_pred cCCCEEEECcccCC-ccHHHHHHHHHHcCCeEEEEEECCC----cHHHHHHHHh--cCCEEE
Confidence 46899988854302 2456888899999998887765431 1223344555 678775
Done!