BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023558
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WNW|A Chain A, D136n Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (hmuo)
pdb|1WNW|B Chain B, D136n Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (hmuo)
pdb|1WNW|C Chain C, D136n Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (hmuo)
Length = 215
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 158 LVFNTIERIVDDSNDVAYA-YFRKTGLERSEGISRDL-------EWFSEQGIIIPEPSTP 209
L + +E+ VD +A L R+E ++RDL EW S I P+
Sbjct: 51 LFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDLDKLNGSSEWRSR---ITASPAV- 106
Query: 210 GVSYAKYLEELAEK-SAPLFLSHFYNIYFSHVAGGQVIER---QHWTRD 254
+ Y LEE+ + P ++H Y Y +++GGQVI R +H+ D
Sbjct: 107 -IDYVNRLEEIRDNVDGPALVAHHYVRYLGNLSGGQVIARMMQRHYGVD 154
>pdb|1WNX|A Chain A, D136e Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
pdb|1WNX|B Chain B, D136e Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
Length = 215
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 158 LVFNTIERIVDDSNDVAYA-YFRKTGLERSEGISRDL-------EWFSEQGIIIPEPSTP 209
L + +E+ VD +A L R+E ++RDL EW S I P+
Sbjct: 51 LFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDLDKLNGSSEWRSR---ITASPAV- 106
Query: 210 GVSYAKYLEELAEK-SAPLFLSHFYNIYFSHVAGGQVIER---QHWTRD 254
+ Y LEE+ + P ++H Y Y ++GGQVI R +H+ D
Sbjct: 107 -IDYVNRLEEIRDNVDGPALVAHHYVRYLGELSGGQVIARMMQRHYGVD 154
>pdb|1IW0|A Chain A, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferric State
pdb|1IW0|B Chain B, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferric State
pdb|1IW0|C Chain C, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferric State
pdb|1IW1|A Chain A, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferrous State
pdb|1IW1|B Chain B, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferrous State
pdb|1IW1|C Chain C, Crystal Structure Of A Heme Oxygenase (Hmuo) From
Corynebacterium Diphtheriae Complexed With Heme In The
Ferrous State
pdb|1V8X|A Chain A, Crystal Structure Of The Dioxygen-Bound Heme Oxygenase
From Corynebacterium Diphtheriae
pdb|1V8X|B Chain B, Crystal Structure Of The Dioxygen-Bound Heme Oxygenase
From Corynebacterium Diphtheriae
pdb|1V8X|C Chain C, Crystal Structure Of The Dioxygen-Bound Heme Oxygenase
From Corynebacterium Diphtheriae
pdb|1WZD|A Chain A, Crystal Structure Of An Artificial Metalloprotein:
Fe(10-Ch2ch2cooh- Salophen)WILD TYPE HEME OXYGENASE
pdb|1WZD|B Chain B, Crystal Structure Of An Artificial Metalloprotein:
Fe(10-Ch2ch2cooh- Salophen)WILD TYPE HEME OXYGENASE
pdb|1WZF|A Chain A, Crystal Structure Of An Artificial Metalloprotein:
Fe(10-Cooh- Salophen)WILD TYPE HEME OXYGENASE
pdb|1WZF|B Chain B, Crystal Structure Of An Artificial Metalloprotein:
Fe(10-Cooh- Salophen)WILD TYPE HEME OXYGENASE
pdb|1WZG|A Chain A, Crystal Structure Of An Artificial Metalloprotein:
Fe(Salophen)WILD Type Heme Oxygenase
pdb|1WZG|B Chain B, Crystal Structure Of An Artificial Metalloprotein:
Fe(Salophen)WILD Type Heme Oxygenase
pdb|2Z68|A Chain A, Crystal Structure Of An Artificial Metalloprotein: Cr[n-
Salicylidene-4-Amino-3-Hydroxyhydrocinnamic Acid]WILD
Type Heme Oxygenase
pdb|2Z68|B Chain B, Crystal Structure Of An Artificial Metalloprotein: Cr[n-
Salicylidene-4-Amino-3-Hydroxyhydrocinnamic Acid]WILD
Type Heme Oxygenase
pdb|3I8R|A Chain A, Crystal Structure Of The Heme Oxygenase From
Corynebacterium Diphtheriae (Hmuo) In Complex With Heme
Binding Ditiothreit
pdb|3I8R|B Chain B, Crystal Structure Of The Heme Oxygenase From
Corynebacterium Diphtheriae (Hmuo) In Complex With Heme
Binding Ditiothreit
pdb|3I8R|C Chain C, Crystal Structure Of The Heme Oxygenase From
Corynebacterium Diphtheriae (Hmuo) In Complex With Heme
Binding Ditiothreit
pdb|3MOO|A Chain A, Crystal Structure Of The Hmuo, Heme Oxygenase From
Corynebacterium Diphtheriae, In Complex With Azide-Bound
Verdoheme
pdb|3MOO|B Chain B, Crystal Structure Of The Hmuo, Heme Oxygenase From
Corynebacterium Diphtheriae, In Complex With Azide-Bound
Verdoheme
Length = 215
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 14/100 (14%)
Query: 158 LVFNTIERIVDDSNDVAYA-YFRKTGLERSEGISRDL-------EWFSEQGIIIPEPSTP 209
L + +E+ VD +A L R+E ++RDL EW S I P+
Sbjct: 51 LFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDLDKLNGSSEWRSR---ITASPAV- 106
Query: 210 GVSYAKYLEELAEK-SAPLFLSHFYNIYFSHVAGGQVIER 248
+ Y LEE+ + P ++H Y Y ++GGQVI R
Sbjct: 107 -IDYVNRLEEIRDNVDGPALVAHHYVRYLGDLSGGQVIAR 145
>pdb|1WNV|A Chain A, D136a Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
pdb|1WNV|B Chain B, D136a Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
pdb|1WNV|C Chain C, D136a Mutant Of Heme Oxygenase From Corynebacterium
Diphtheriae (Hmuo)
Length = 215
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 158 LVFNTIERIVDDSNDVAYA-YFRKTGLERSEGISRDL-------EWFSEQGIIIPEPSTP 209
L + +E+ VD +A L R+E ++RDL EW S I P+
Sbjct: 51 LFYTALEQAVDAVRASGFAESLLDPALNRAEVLARDLDKLNGSSEWRSR---ITASPAV- 106
Query: 210 GVSYAKYLEELAEK-SAPLFLSHFYNIYFSHVAGGQVIER---QHWTRD 254
+ Y LEE+ + P ++H Y Y ++GGQVI R +H+ D
Sbjct: 107 -IDYVNRLEEIRDNVDGPALVAHHYVRYLGALSGGQVIARMMQRHYGVD 154
>pdb|1XJZ|A Chain A, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
pdb|1XJZ|B Chain B, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
Length = 233
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 183 LERSEGISRDLE-WFSE--QGIIIPEPSTPGVS-YAKYLEELAEKSAPLFLSHFYNIYFS 238
L R + +DL W+ Q +I P TP + Y K L E+ L ++H Y Y +
Sbjct: 83 LHRKAALEQDLAFWYGPRWQEVI---PYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLA 139
Query: 239 HVAGGQVIER 248
++GGQV+++
Sbjct: 140 DLSGGQVLKK 149
>pdb|1XK0|A Chain A, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
pdb|1XK0|B Chain B, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
Length = 233
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 183 LERSEGISRDLE-WFSE--QGIIIPEPSTPGVS-YAKYLEELAEKSAPLFLSHFYNIYFS 238
L R + +DL W+ Q +I P TP + Y K L E+ L ++H Y Y +
Sbjct: 83 LHRKAALEQDLAFWYGPRWQEVI---PYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLA 139
Query: 239 HVAGGQVIER 248
++GGQV+++
Sbjct: 140 DLSGGQVLKK 149
>pdb|2Q32|A Chain A, Crystal Structure Of Human Heme Oxygenase-2 C127a (Ho-2)
pdb|2Q32|B Chain B, Crystal Structure Of Human Heme Oxygenase-2 C127a (Ho-2)
pdb|2QPP|A Chain A, Crystal Structure Of Human Heme Oxygenase-2 C127a (Ho-2)
With Bound Heme
pdb|2QPP|B Chain B, Crystal Structure Of Human Heme Oxygenase-2 C127a (Ho-2)
With Bound Heme
pdb|2RGZ|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Human Heme Oxygenase-2 C127a (Ho-2) With Bound Heme
pdb|2RGZ|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Human Heme Oxygenase-2 C127a (Ho-2) With Bound Heme
Length = 264
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 183 LERSEGISRDLEWFS----EQGIIIPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFS 238
L R E +++D+E+F E+ + P+ + V Y+ + L ++H Y Y
Sbjct: 103 LHRKEALTKDMEYFFGENWEEQVQAPKAAQKYVERIHYI---GQNEPELLVAHAYTRYMG 159
Query: 239 HVAGGQVIER 248
++GGQV+++
Sbjct: 160 DLSGGQVLKK 169
>pdb|1N3U|A Chain A, Crystal Structure Of Human Heme Oxygenase 1 (Ho-1) In
Complex With Its Substrate Heme, Crystal Form B
pdb|1N3U|B Chain B, Crystal Structure Of Human Heme Oxygenase 1 (Ho-1) In
Complex With Its Substrate Heme, Crystal Form B
pdb|1N45|A Chain A, X-Ray Crystal Structure Of Human Heme Oxygenase-1 (Ho-1)
In Complex With Its Substrate Heme
pdb|1N45|B Chain B, X-Ray Crystal Structure Of Human Heme Oxygenase-1 (Ho-1)
In Complex With Its Substrate Heme
pdb|1OZR|A Chain A, Crystal Structures Of The Ferric, Ferrous And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OZR|B Chain B, Crystal Structures Of The Ferric, Ferrous And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OZW|A Chain A, Crystal Structures Of The Ferric, Ferrous And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OZW|B Chain B, Crystal Structures Of The Ferric, Ferrous And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1S8C|A Chain A, Crystal Structure Of Human Heme Oxygenase In A Complex
With Biliverdine
pdb|1S8C|B Chain B, Crystal Structure Of Human Heme Oxygenase In A Complex
With Biliverdine
pdb|1S8C|C Chain C, Crystal Structure Of Human Heme Oxygenase In A Complex
With Biliverdine
pdb|1S8C|D Chain D, Crystal Structure Of Human Heme Oxygenase In A Complex
With Biliverdine
pdb|1S13|A Chain A, Human Heme Oxygenase Oxidatition Of Alpha- And Gamma-Meso-
Phenylhemes
pdb|1S13|B Chain B, Human Heme Oxygenase Oxidatition Of Alpha- And Gamma-Meso-
Phenylhemes
pdb|1T5P|A Chain A, Human Heme Oxygenase Oxidation Of Alpha- And Gamma-Meso-
Phenylhemes
pdb|1T5P|B Chain B, Human Heme Oxygenase Oxidation Of Alpha- And Gamma-Meso-
Phenylhemes
pdb|1TWN|A Chain A, Crystal Structures Of Ferrous And Ferrous-No Forms Of
Verdoheme In A Complex With Human Heme Oxygenase-1:
Catalytic Implications For Heme Cleavage
pdb|1TWN|B Chain B, Crystal Structures Of Ferrous And Ferrous-No Forms Of
Verdoheme In A Complex With Human Heme Oxygenase-1:
Catalytic Implications For Heme Cleavage
pdb|1TWR|A Chain A, Crystal Structures Of Ferrous And Ferrous-No Forms Of
Verdoheme In A Complex With Human Heme Oxygenase-1:
Catalytic Implications For Heme Cleavage
pdb|1TWR|B Chain B, Crystal Structures Of Ferrous And Ferrous-No Forms Of
Verdoheme In A Complex With Human Heme Oxygenase-1:
Catalytic Implications For Heme Cleavage
pdb|3CZY|A Chain A, Crystal Structure Of Human Heme Oxygenase-1 In Complex
With 1-(Adamantan-1-Yl)-2-(1h-Imidazol-1-Yl)ethanone
pdb|3CZY|B Chain B, Crystal Structure Of Human Heme Oxygenase-1 In Complex
With 1-(Adamantan-1-Yl)-2-(1h-Imidazol-1-Yl)ethanone
pdb|3HOK|A Chain A, X-Ray Crystal Structure Of Human Heme Oxygenase-1 With
(2r,
4s)-2-[2-(4-Chlorophenyl)ethyl]-2-[(1h-Imidazol-1-Yl)
Methyl]-4[((5-Trifluoromethylpyridin-2-Yl)thio)methyl]-
1,3- Dioxolane: A Novel, Inducible Binding Mode
pdb|3HOK|B Chain B, X-Ray Crystal Structure Of Human Heme Oxygenase-1 With
(2r,
4s)-2-[2-(4-Chlorophenyl)ethyl]-2-[(1h-Imidazol-1-Yl)
Methyl]-4[((5-Trifluoromethylpyridin-2-Yl)thio)methyl]-
1,3- Dioxolane: A Novel, Inducible Binding Mode
pdb|3K4F|A Chain A, X-Ray Crystal Structure Of Human Heme Oxygenase-1 In
Complex With
4-Phenyl-1-(1h-1,2,4-Triazol-1-Yl)-2-Butanone
pdb|3K4F|B Chain B, X-Ray Crystal Structure Of Human Heme Oxygenase-1 In
Complex With
4-Phenyl-1-(1h-1,2,4-Triazol-1-Yl)-2-Butanone
pdb|3TGM|A Chain A, X-Ray Crystal Structure Of Human Heme Oxygenase-1 In
Complex With 1- (1h-Imidazol-1-Yl)-4,4-Diphenyl-2
Butanone
pdb|3TGM|B Chain B, X-Ray Crystal Structure Of Human Heme Oxygenase-1 In
Complex With 1- (1h-Imidazol-1-Yl)-4,4-Diphenyl-2
Butanone
Length = 233
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 183 LERSEGISRDLE-WFSE--QGIIIPEPSTPGVS-YAKYLEELAEKSAPLFLSHFYNIYFS 238
L R + +DL W+ Q +I P TP + Y K L E+ L ++H Y Y
Sbjct: 83 LHRKAALEQDLAFWYGPRWQEVI---PYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLG 139
Query: 239 HVAGGQVIER 248
++GGQV+++
Sbjct: 140 DLSGGQVLKK 149
>pdb|1XK2|A Chain A, Nadph- And Ascorbate-Supported Heme Oxygenase Reactions
Are Distinct. Regiospecificity Of Heme Cleavage By The
R183e Mutant
pdb|1XK2|B Chain B, Nadph- And Ascorbate-Supported Heme Oxygenase Reactions
Are Distinct. Regiospecificity Of Heme Cleavage By The
R183e Mutant
pdb|1XK3|A Chain A, Nadph- And Ascorbate-Supported Heme Oxygenase Reactions
Are Distinct. Regiospecificity Of Heme Cleavage By The
R183e Mutant
pdb|1XK3|B Chain B, Nadph- And Ascorbate-Supported Heme Oxygenase Reactions
Are Distinct. Regiospecificity Of Heme Cleavage By The
R183e Mutant
Length = 233
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 183 LERSEGISRDLE-WFSE--QGIIIPEPSTPGVS-YAKYLEELAEKSAPLFLSHFYNIYFS 238
L R + +DL W+ Q +I P TP + Y K L E+ L ++H Y Y
Sbjct: 83 LHRKAALEQDLAFWYGPRWQEVI---PYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLG 139
Query: 239 HVAGGQVIER 248
++GGQV+++
Sbjct: 140 DLSGGQVLKK 149
>pdb|1NI6|A Chain A, Comparisions Of The Heme-free And-bound Crystal Structures
Of Human Heme Oxygenase-1
pdb|1NI6|B Chain B, Comparisions Of The Heme-free And-bound Crystal Structures
Of Human Heme Oxygenase-1
pdb|1NI6|C Chain C, Comparisions Of The Heme-free And-bound Crystal Structures
Of Human Heme Oxygenase-1
pdb|1NI6|D Chain D, Comparisions Of The Heme-free And-bound Crystal Structures
Of Human Heme Oxygenase-1
Length = 224
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 183 LERSEGISRDLE-WFSE--QGIIIPEPSTPGVS-YAKYLEELAEKSAPLFLSHFYNIYFS 238
L R + +DL W+ Q +I P TP + Y K L E+ L ++H Y Y
Sbjct: 83 LHRKAALEQDLAFWYGPRWQEVI---PYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLG 139
Query: 239 HVAGGQVIER 248
++GGQV+++
Sbjct: 140 DLSGGQVLKK 149
>pdb|1OYK|A Chain A, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OYK|B Chain B, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OYL|A Chain A, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OYL|B Chain B, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OZE|A Chain A, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-
1:catalytic Implications
pdb|1OZE|B Chain B, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-
1:catalytic Implications
pdb|1OZL|A Chain A, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
pdb|1OZL|B Chain B, Crystal Structures Of The Ferric, Ferrous, And Ferrous-No
Forms Of The Asp140ala Mutant Of Human Heme Oxygenase-1:
Catalytic Implications
Length = 233
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 183 LERSEGISRDLE-WFSE--QGIIIPEPSTPGVS-YAKYLEELAEKSAPLFLSHFYNIYFS 238
L R + +DL W+ Q +I P TP + Y K L E+ L ++H Y Y
Sbjct: 83 LHRKAALEQDLAFWYGPRWQEVI---PYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLG 139
Query: 239 HVAGGQVIER 248
++GGQV+++
Sbjct: 140 ALSGGQVLKK 149
>pdb|1WE1|A Chain A, Crystal Structure Of Heme Oxygenase-1 From Cyanobacterium
Synechocystis Sp. Pcc6803 In Complex With Heme
pdb|1WE1|B Chain B, Crystal Structure Of Heme Oxygenase-1 From Cyanobacterium
Synechocystis Sp. Pcc6803 In Complex With Heme
pdb|1WE1|C Chain C, Crystal Structure Of Heme Oxygenase-1 From Cyanobacterium
Synechocystis Sp. Pcc6803 In Complex With Heme
pdb|1WE1|D Chain D, Crystal Structure Of Heme Oxygenase-1 From Cyanobacterium
Synechocystis Sp. Pcc6803 In Complex With Heme
Length = 240
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 183 LERSEGISRDLEWFS----EQGIIIPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFS 238
L R + + +DL+++ Q + I S G +Y + ++A + L ++H Y Y
Sbjct: 74 LNRKQSLEQDLQFYYGSNWRQEVKI---SAAGQAYVDRVRQVAATAPELLVAHSYTRYLG 130
Query: 239 HVAGGQVIER 248
++GGQ++++
Sbjct: 131 DLSGGQILKK 140
>pdb|1DVG|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme; Seleleno-Methionine Derivative, Mutated At
M51t,M93l, M155l,M191l.
pdb|1DVG|B Chain B, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme; Seleleno-Methionine Derivative, Mutated At
M51t,M93l, M155l,M191l
Length = 267
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 164 ERIVDDSNDVAYA--YFRKTGLERSEGISRDLE-WFS---EQGIIIPEPSTPGVS-YAKY 216
E I + + YA YF + L R + +DL W+ ++ I P TP Y K
Sbjct: 63 EEIERNKQNPVYAPLYFPEE-LHRRAALEQDLAFWYGPHWQEAI----PYTPATQHYVKR 117
Query: 217 LEELAEKSAPLFLSHFYNIYFSHVAGGQVIER 248
L E+ L ++H Y Y ++GGQV+++
Sbjct: 118 LHEVGGTHPELLVAHAYTRYLGDLSGGQVLKK 149
>pdb|1WOV|A Chain A, Crystal Strucure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme
pdb|1WOV|B Chain B, Crystal Strucure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme
pdb|1WOW|A Chain A, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 Complexed With Heme In Ferrous Form
pdb|1WOW|B Chain B, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 Complexed With Heme In Ferrous Form
pdb|1WOX|A Chain A, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme And No
pdb|1WOX|B Chain B, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme And No
Length = 250
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Query: 149 FVKYLVDSQLVFNTIERIVDDSND---VAYAYFRKTGLERSEGISRDLEWFSE---QGII 202
F + L + +++ +E + D ++ YF + L R++ ++ DL ++ Q II
Sbjct: 38 FRQLLANLYYLYSALEAALRQHRDNEIISAIYFPE--LNRTDKLAEDLTYYYGPNWQQII 95
Query: 203 IPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIE 247
P P Y L+ +A L ++H Y Y ++GGQ ++
Sbjct: 96 QPTPCAK--IYVDRLKTIAASEPELLIAHCYTRYLGDLSGGQSLK 138
>pdb|1DVE|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme
pdb|1IRM|A Chain A, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1IRM|B Chain B, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1IRM|C Chain C, Crystal Structure Of Apo Heme Oxygenase-1
pdb|1IVJ|A Chain A, Crystal Structure Of Rat Hemeoxygenase-1 In Complex With
Heme And Azide.
pdb|1IX3|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme Bound To Cyanide
pdb|1IX4|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme Bound To Carbon Monoxide
pdb|1J02|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1-heme Bound To No
pdb|1J2C|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Biliverdin Ixalpha-Iron Cluster
pdb|1UBB|A Chain A, Crystal Structure Of Rat Ho-1 In Complex With Ferrous Heme
pdb|1ULX|A Chain A, Partially Photolyzed Structure Of Co-bound Heme-heme
Oxygenase Complex
pdb|1VGI|A Chain A, Crystal Structure Of Xenon Bound Rat Heme-heme Oxygenase-1
Complex
pdb|2DY5|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme And
2-[2-(4-Chlorophenyl)ethyl]-2-[(1h-Imidazol-1-Yl)
Methyl]-1,3-Dioxolane
pdb|2E7E|A Chain A, Bent-Binding Of Cyanide To The Heme Iron In Rat Heme
Oxygenase-1
pdb|2ZVU|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Ferrous Verdoheme
pdb|4G7L|A Chain A, Crystal Structure Of Rat Heme Oxygenase-1 In Complex With
Heme And O2
pdb|4G7P|A Chain A, Rat Heme Oxygenase-1 In Complex With Heme And Co With 1 Hr
Illumination At 100 K: Laser Off
pdb|4G7T|A Chain A, Rat Heme Oxygenase-1 In Complex With Heme And Co With 1 Hr
Illumination: Laser On
pdb|4G7U|A Chain A, Rat Heme Oxygenase-1 In Complex With Heme And Co With 16
Hr Illumination: Laser Off
pdb|4G8P|A Chain A, Rat Heme Oxygenase-1 In Complex With Heme And Co With 16
Hr Illumination: Laser On
pdb|4G8U|A Chain A, Rat Heme Oxygenase-1 In Complex With Heme And O2 With 13
Hr Illumination: Laser Off
pdb|4G8W|A Chain A, Rat Heme Oxygenase-1 In Complex With Heme And O2 With 13
Hr Illumination: Laser On
pdb|4G98|A Chain A, Rat Heme Oxygenase-1 In Complex With Heme And Co At 100k
pdb|4G99|A Chain A, Rat Heme Oxygenase-1 In Complex With Heme And Co At 100 K
After Warming To 160 K
Length = 267
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 164 ERIVDDSNDVAYA--YFRKTGLERSEGISRDLE-WFS---EQGIIIPEPSTPGVS-YAKY 216
E I + + YA YF + L R + +D+ W+ ++ I P TP Y K
Sbjct: 63 EEIERNKQNPVYAPLYFPEE-LHRRAALEQDMAFWYGPHWQEAI----PYTPATQHYVKR 117
Query: 217 LEELAEKSAPLFLSHFYNIYFSHVAGGQVIER 248
L E+ L ++H Y Y ++GGQV+++
Sbjct: 118 LHEVGGTHPELLVAHAYTRYLGDLSGGQVLKK 149
>pdb|3I9T|A Chain A, Crystal Structure Of The Rat Heme Oxygenase (Ho-1) In
Comple Heme Binding Dithiothreitol (Dtt)
pdb|3I9U|A Chain A, Crystal Structure Of The Rat Heme Oxygenase (Ho-1) In
Comple Heme Binding Dithioerythritol (Dte)
Length = 263
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 164 ERIVDDSNDVAYA--YFRKTGLERSEGISRDLE-WFS---EQGIIIPEPSTPGVS-YAKY 216
E I + + YA YF + L R + +D+ W+ ++ I P TP Y K
Sbjct: 63 EEIERNKQNPVYAPLYFPEE-LHRRAALEQDMAFWYGPHWQEAI----PYTPATQHYVKR 117
Query: 217 LEELAEKSAPLFLSHFYNIYFSHVAGGQVIER 248
L E+ L ++H Y Y ++GGQV+++
Sbjct: 118 LHEVGGTHPELLVAHAYTRYLGDLSGGQVLKK 149
>pdb|1XK1|A Chain A, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
pdb|1XK1|B Chain B, Crystal Structures Of The G139a, G139a-No And G143h
Mutants Of Human Heme Oxygenase-1
Length = 233
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 183 LERSEGISRDLE-WFSE--QGIIIPEPSTPGVS-YAKYLEELAEKSAPLFLSHFYNIYFS 238
L R + +DL W+ Q +I P TP + Y K L E+ L ++H Y Y
Sbjct: 83 LHRKAALEQDLAFWYGPRWQEVI---PYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLG 139
Query: 239 HVAGGQVIER 248
++ GQV+++
Sbjct: 140 DLSHGQVLKK 149
>pdb|4B5H|A Chain A, Substate Bound Inactive Mutant Of Neisseria Ap
Endonuclease In Presence Of Metal Ions
Length = 259
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 185 RSEGISRDLEWFSEQGIIIPEPSTPGVSYAKYLEELAEKSAPLFLSHFY 233
R + ++D+ W + ++ PE + VS Y +E APL + + Y
Sbjct: 208 RGQAYAKDVGWRIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDY 256
>pdb|2JC5|A Chain A, Apurinic Apyrimidinic (Ap) Endonuclease (Nape) From
Neisseria Meningitidis
pdb|4B5F|A Chain A, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 1)
pdb|4B5G|A Chain A, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 2)
pdb|4B5G|B Chain B, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 2)
pdb|4B5G|C Chain C, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 2)
pdb|4B5I|A Chain A, Product Complex Of Neisseria Ap Endonuclease In Presence
Of Metal Ions
pdb|4B5J|A Chain A, Neisseria Ap Endonuclease Bound To The Substrate With An
Orphan Adenine Base
pdb|4B5M|A Chain A, Neisseria Ap Endonuclease Bound To The Substrate With A
Cytosine Orphan Base
pdb|4B5M|B Chain B, Neisseria Ap Endonuclease Bound To The Substrate With A
Cytosine Orphan Base
pdb|4B5M|C Chain C, Neisseria Ap Endonuclease Bound To The Substrate With A
Cytosine Orphan Base
Length = 259
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 185 RSEGISRDLEWFSEQGIIIPEPSTPGVSYAKYLEELAEKSAPLFLSHFY 233
R + ++D+ W + ++ PE + VS Y +E APL + + Y
Sbjct: 208 RGQAYAKDVGWRIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDY 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,736,339
Number of Sequences: 62578
Number of extensions: 288475
Number of successful extensions: 714
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 22
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)