Query 023558
Match_columns 280
No_of_seqs 162 out of 384
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 04:57:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00168 pbsA heme oxygenase; 100.0 2.1E-40 4.5E-45 301.4 14.8 140 139-278 29-208 (238)
2 COG5398 Heme oxygenase [Inorga 100.0 1.5E-36 3.3E-41 273.0 12.5 141 137-277 25-204 (238)
3 KOG4480 Heme oxygenase [Inorga 100.0 8.1E-32 1.8E-36 249.8 9.1 188 75-280 56-282 (283)
4 PF01126 Heme_oxygenase: Heme 100.0 2E-28 4.3E-33 211.8 10.8 137 140-276 28-205 (205)
5 cd00232 HemeO Heme oxygenase c 99.9 4.6E-27 1E-31 203.0 14.4 163 88-277 1-202 (203)
6 KOG4480 Heme oxygenase [Inorga 99.5 2E-13 4.4E-18 127.6 8.9 140 139-278 39-213 (283)
7 COG3230 HemO Heme oxygenase [I 90.8 4.9 0.00011 36.8 11.6 136 137-275 30-192 (196)
8 PF09026 CENP-B_dimeris: Centr 52.3 13 0.00028 30.9 2.6 20 143-162 40-59 (101)
9 PF03070 TENA_THI-4: TENA/THI- 43.1 89 0.0019 26.7 6.5 86 139-224 20-116 (210)
10 COG1126 GlnQ ABC-type polar am 42.6 15 0.00033 34.7 1.8 33 229-261 126-177 (240)
11 PF14246 TetR_C_7: AefR-like t 41.5 24 0.00052 24.4 2.2 33 236-268 15-52 (55)
12 KOG0066 eIF2-interacting prote 35.3 8.5 0.00018 40.2 -1.2 21 226-246 691-711 (807)
13 TIGR02314 ABC_MetN D-methionin 29.9 25 0.00054 34.0 1.1 36 230-265 131-185 (343)
14 cd01068 sensor_globin Globin d 28.7 1.7E+02 0.0036 23.7 5.6 62 211-274 79-145 (147)
15 PF15603 Imm45: Immunity prote 27.5 52 0.0011 26.2 2.3 19 250-268 55-73 (82)
16 TIGR01186 proV glycine betaine 26.8 41 0.00089 32.8 2.0 37 230-266 120-175 (363)
17 COG1135 AbcC ABC-type metal io 26.6 33 0.00072 34.0 1.3 32 230-261 132-182 (339)
18 cd03224 ABC_TM1139_LivF_branch 25.6 45 0.00098 28.8 1.8 37 229-265 122-177 (222)
19 TIGR03258 PhnT 2-aminoethylpho 25.4 39 0.00084 32.9 1.5 38 229-266 127-183 (362)
20 PRK11000 maltose/maltodextrin 25.2 43 0.00094 32.4 1.8 36 230-265 124-178 (369)
21 cd03259 ABC_Carb_Solutes_like 25.1 41 0.0009 29.0 1.5 35 230-264 121-174 (213)
22 COG3839 MalK ABC-type sugar tr 25.0 75 0.0016 31.2 3.4 52 213-267 110-180 (338)
23 COG1179 Dinucleotide-utilizing 24.6 36 0.00077 32.7 1.0 20 70-89 177-196 (263)
24 TIGR01288 nodI ATP-binding ABC 23.5 40 0.00088 31.3 1.2 36 229-264 125-179 (303)
25 TIGR03265 PhnT2 putative 2-ami 23.1 55 0.0012 31.6 2.0 39 229-267 124-181 (353)
26 COG1121 ZnuC ABC-type Mn/Zn tr 22.0 46 0.001 31.5 1.3 16 230-245 130-145 (254)
27 cd03255 ABC_MJ0796_Lo1CDE_FtsE 21.8 51 0.0011 28.5 1.4 33 230-262 131-182 (218)
28 TIGR01184 ntrCD nitrate transp 21.7 50 0.0011 29.2 1.4 35 230-264 105-158 (230)
29 PRK11831 putative ABC transpor 21.3 49 0.0011 30.0 1.3 33 230-262 134-185 (269)
30 PTZ00347 phosphomethylpyrimidi 20.9 2.2E+02 0.0048 28.6 5.9 82 139-224 37-126 (504)
31 TIGR01188 drrA daunorubicin re 20.7 49 0.0011 30.7 1.1 33 230-262 115-166 (302)
32 PF14369 zf-RING_3: zinc-finge 20.1 19 0.00042 24.2 -1.2 12 82-93 24-35 (35)
No 1
>CHL00168 pbsA heme oxygenase; Provisional
Probab=100.00 E-value=2.1e-40 Score=301.38 Aligned_cols=140 Identities=19% Similarity=0.336 Sum_probs=131.9
Q ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccccCCCccchHHHHHHHHHHhhcC-CCCCCCCchHHHHHHH
Q 023558 139 GETWKPSMDAFVKYLVDSQLVFNTIERIVDDSND-VAYAYFRKTGLERSEGISRDLEWFSEQG-IIIPEPSTPGVSYAKY 216 (280)
Q Consensus 139 ~~~w~~s~e~Y~~lL~~ly~VY~ALE~av~~~~d-p~~a~f~~peL~Rs~aLekDL~~f~G~~-~~~p~P~pat~~Yv~r 216 (280)
+-++..++++|+++|.++|+||++||++++++.+ |.+++|++|+|.|+++|++||+||+|++ ++.+.|+|+++.||+|
T Consensus 29 ll~g~~~~~~Y~~ll~~ly~vY~aLE~~l~~~~~~~~~~~~~~peL~R~~aLe~DL~~l~G~~w~~~~~p~pa~~~Yv~r 108 (238)
T CHL00168 29 FLGGVIDKKSYRKLVANLYFVYSAIEEEIEKNKEHPLIKPIYFQELNRKESLEKDLNYYYGDDWKSIIEPSPATKIYVDR 108 (238)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccchhhhhhHHHHHHHHHHcCCCccccCCCChHHHHHHHH
Confidence 3468999999999999999999999999999986 6669999999999999999999999998 5677899999999999
Q ss_pred HHHHHhcCcchhHhHHHHHHhhhcccchhhhcc--------------------------------------CCCHHHHHH
Q 023558 217 LEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQ--------------------------------------HWTRDEKNK 258 (280)
Q Consensus 217 L~ela~~~P~lLVAHaYtRYLGDLSGGQiI~r~--------------------------------------~Ldeeek~~ 258 (280)
|+++++++|.+|+||+||||||||||||||+++ +||++++++
T Consensus 109 I~~~~~~~P~~LvAH~YvrYLGdlsGGQiI~k~l~r~~gl~~~~G~~Fy~F~~i~~~~~fk~~yr~~Ld~l~l~e~e~~~ 188 (238)
T CHL00168 109 IHKISAKKPELLIAHAYTRYLGDLSGGQILKKIAQRAMNLSDSGGLAFYDFDNIEDDQEFKQIYKAALDNLPLSDDQIQN 188 (238)
T ss_pred HHHHhhcChHHHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCcCccccCCCCcCcHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999999999999999996 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023558 259 SLKEAAKSFKFLGQIVRLII 278 (280)
Q Consensus 259 iIeEA~~AF~lN~~Ifr~I~ 278 (280)
||+||+.||++|++||+.+-
T Consensus 189 iI~EA~~AF~lN~~vf~eL~ 208 (238)
T CHL00168 189 IIAEANIAFNLNMKMFQELN 208 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998763
No 2
>COG5398 Heme oxygenase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-36 Score=273.03 Aligned_cols=141 Identities=19% Similarity=0.314 Sum_probs=134.9
Q ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccccCCCccchHHHHHHHHHHhhcC-CCCCCCCchHHHHH
Q 023558 137 NDGETWKPSMDAFVKYLVDSQLVFNTIERIVDDSND-VAYAYFRKTGLERSEGISRDLEWFSEQG-IIIPEPSTPGVSYA 214 (280)
Q Consensus 137 ~~~~~w~~s~e~Y~~lL~~ly~VY~ALE~av~~~~d-p~~a~f~~peL~Rs~aLekDL~~f~G~~-~~~p~P~pat~~Yv 214 (280)
+-+-++.++++.|.+++.++|+||++||++++.++| |.++.+++|+|+|.+.|++||.+++|.+ ++.+.|+|+|+.||
T Consensus 25 kcfLkg~V~~e~f~kl~~n~yf~ysaleaa~~~~~d~~~l~~i~fp~lnr~~tle~dl~~yyg~nwre~I~~sp~t~~yv 104 (238)
T COG5398 25 KCFLKGVVERESFRKLLANLYFVYSALEAATQIHKDNPILSSIYFPELNRKATLEKDLLYYYGNNWRENIQPSPATIAYV 104 (238)
T ss_pred HHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhccchhhhhHHHhhcCHHHHhcccHHHhcCcChhHHHHH
Confidence 347789999999999999999999999999999998 7789999999999999999999999977 67889999999999
Q ss_pred HHHHHHHhcCcchhHhHHHHHHhhhcccchhhhcc-------------------------------------CCCHHHHH
Q 023558 215 KYLEELAEKSAPLFLSHFYNIYFSHVAGGQVIERQ-------------------------------------HWTRDEKN 257 (280)
Q Consensus 215 ~rL~ela~~~P~lLVAHaYtRYLGDLSGGQiI~r~-------------------------------------~Ldeeek~ 257 (280)
.||++++...|.+||||+||||||||||||||+++ +||+++++
T Consensus 105 ~rv~~iaa~ap~lLIah~ytRyLGdlsggq~l~ki~q~~~~L~~~gtaFy~F~dl~dek~fK~~YR~~ld~l~ldeAt~~ 184 (238)
T COG5398 105 DRVRYIAATAPELLIAHNYTRYLGDLSGGQILKKIAQSALELSEGGTAFYEFEDLGDEKAFKDEYRQNLDSLELDEATKL 184 (238)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHhcCCCcHHHHHHHHHHhccccccceeeeHhhcchhhhHHHHHHHHhhcccccHHHHH
Confidence 99999999999999999999999999999999998 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023558 258 KSLKEAAKSFKFLGQIVRLI 277 (280)
Q Consensus 258 ~iIeEA~~AF~lN~~Ifr~I 277 (280)
+||+||+.||++|++||..|
T Consensus 185 rIvdeAn~aF~~N~~~~~eL 204 (238)
T COG5398 185 RIVDEANDAFDFNMQMFQEL 204 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876
No 3
>KOG4480 consensus Heme oxygenase [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.1e-32 Score=249.80 Aligned_cols=188 Identities=41% Similarity=0.671 Sum_probs=171.2
Q ss_pred hhcccccCCCCccchHHHHHHHHhHhcccCCCCCCCCCCCCCCCCCCCCCcchhhhhhhccCCCCCccccCHHH---HHH
Q 023558 75 RVRYRREYPGESKGITEEMRFVAMRLRNLKGKKYPSSPHNSNSDCEDSSNDDVEHEQEVKQDNDGETWKPSMDA---FVK 151 (280)
Q Consensus 75 ~~r~~~~~pge~kg~~eEmRfvaMrl~~~~q~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~w~~s~e~---Y~~ 151 (280)
.-++.++||||..||+||||||+|+||++++.+++.. .++ +...-.+.+|..+.++ |.+
T Consensus 56 ~~~~~~~y~~e~~~~~E~~~F~~~~f~~~~el~e~~a-----------------~~~-d~~~~~~~~W~e~ie~~pa~~k 117 (283)
T KOG4480|consen 56 LYFWYKAYPGETEGFKEEMRFVAMRFPSTEELHEKEA-----------------LEQ-DPEEFFGENWEETIEGEPAYQK 117 (283)
T ss_pred HHHHHHhCcchhhhhhHHHhhHhhhcCCHHHHhHHhh-----------------hhc-ChhhhccccccccccCCHHHHH
Confidence 4466889999999999999999999999988765210 111 2233578999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccCCCccchHHHHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhcCcchhHhH
Q 023558 152 YLVDSQLVFNTIERIVDDSNDVAYAYFRKTGLERSEGISRDLEWFSEQGIIIPEPSTPGVSYAKYLEELAEKSAPLFLSH 231 (280)
Q Consensus 152 lL~~ly~VY~ALE~av~~~~dp~~a~f~~peL~Rs~aLekDL~~f~G~~~~~p~P~pat~~Yv~rL~ela~~~P~lLVAH 231 (280)
||++++.||+++|.++.+++-+.|..+.+.||+|.+.++.||.|+..|+..+|.|.+++.+|..++.+.++.+|..+|||
T Consensus 118 yl~~~~~v~~t~e~ll~~s~~~~Y~g~~s~GLek~~q~~~dl~w~~~q~~~~pe~~~a~k~~~~y~k~~~E~~pq~~I~~ 197 (283)
T KOG4480|consen 118 YLVDSKLVADTEEELLVASAYTRYAGLLSGGLEKAEQKELDLPWTGEQFYTFPELANAGKTYQKYLKNNLELDPQRFICE 197 (283)
T ss_pred HHHHHHHHHHhhhHHHHHhhHHHHHHhhccHHHHHHHHHhhcchhhhhccccCCCCcHHHHHHHHHHHhhccChhHHHHH
Confidence 99999999999999999999899999999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHhhhcccchhhhcc------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 023558 232 FYNIYFSHVAGGQVIERQ------------------------------------HWTRDEKNKSLKEAAKSFKFLGQIVR 275 (280)
Q Consensus 232 aYtRYLGDLSGGQiI~r~------------------------------------~Ldeeek~~iIeEA~~AF~lN~~Ifr 275 (280)
+|+.|+.+..|||+|+++ .|+++++++||.|..++|.+-+.|++
T Consensus 198 ~~~iyf~~~~~f~~~~~~v~~~ile~~~~ef~~~~~~~~~~~~~v~ekln~~~~~~~r~~~~~~L~~~~l~fif~~~iv~ 277 (283)
T KOG4480|consen 198 FYNIYFAHIAGFQMLGRKVAEEILENKELEFDGWDGRFSELLQNVREKLNKEGEAWTREEKNACLLETSLAFIFVGEIVR 277 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhhHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988 89999999999999999999999999
Q ss_pred HHHhC
Q 023558 276 LIILL 280 (280)
Q Consensus 276 ~I~~~ 280 (280)
+|++.
T Consensus 278 ~~L~a 282 (283)
T KOG4480|consen 278 LILSA 282 (283)
T ss_pred HHHhc
Confidence 99873
No 4
>PF01126 Heme_oxygenase: Heme oxygenase; InterPro: IPR016053 Haem oxygenase (1.14.99.3 from EC) (HO) [] is the microsomal enzyme that, in animals, carries out the oxidation of haem, it cleaves the haem ring at the alpha-methene bridge to form biliverdin and carbon monoxide []. Biliverdin is subsequently converted to bilirubin by biliverdin reductase. In mammals there are three isozymes of haem oxygenase: HO-1 to HO-3. The first two isozymes differ in their tissue expression and their inducibility: HO-1 is highly inducible by its substrate haem and by various non-haem substances, while HO-2 is non-inducible. It has been suggested [] that HO-2 could be implicated in the production of carbon monoxide in the brain where it is said to act as a neurotransmitter. In the genome of the chloroplast of red algae as well as in cyanobacteria, there is a haem oxygenase (gene pbsA) that is the key enzyme in the synthesis of the chromophoric part of the photosynthetic antennae []. A haem oxygenase is also present in the bacteria Corynebacterium diphtheriae (gene hmuO), where it is involved in the acquisition of iron from the host haem []. There is, in the central section of these enzymes, a well-conserved region centred on a histidine residue.; GO: 0004392 heme oxygenase (decyclizing) activity, 0006788 heme oxidation, 0055114 oxidation-reduction process; PDB: 1J77_A 1P3U_A 1P3V_A 1P3T_A 1WNW_B 1WNX_B 1IW1_B 1WNV_C 1V8X_A 1WZG_B ....
Probab=99.95 E-value=2e-28 Score=211.77 Aligned_cols=137 Identities=28% Similarity=0.352 Sum_probs=123.6
Q ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccccCCCccchHHHHHHHHHHhhcC-CCCCCCCchHHHHHHHH
Q 023558 140 ETWKPSMDAFVKYLVDSQLVFNTIERIVDDSND-VAYAYFRKTGLERSEGISRDLEWFSEQG-IIIPEPSTPGVSYAKYL 217 (280)
Q Consensus 140 ~~w~~s~e~Y~~lL~~ly~VY~ALE~av~~~~d-p~~a~f~~peL~Rs~aLekDL~~f~G~~-~~~p~P~pat~~Yv~rL 217 (280)
.++.+|++.|+++|.++|.||.+||.+++.+.+ +.++.+++|+|.|++.|++||++|.|++ .+.+.|++++..|+.+|
T Consensus 28 ~~~~~~~~~Y~~~L~~~~~~y~~lE~~l~~~~~~~~~~~~~~~~l~R~~~L~~DL~~l~~~~~~~~~~~~~a~~~~~~~i 107 (205)
T PF01126_consen 28 FAGDLSRDDYARFLQAFYHVYRALEAALDRNRDDPALAPLYFPELRRSAALEADLAALGGPDWRDDIEPSPATQAYVPHI 107 (205)
T ss_dssp HTTSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTTGGGS-GHHHTHHHHHHHHHHHHCTTHHHHCHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccCcchhHHHHHHHHHHHhhCCCcccccCCChhHHHHHHHH
Confidence 467899999999999999999999999999855 7788999999999999999999999965 45667788999999999
Q ss_pred HHHHhcCcchhHhHHHHHHhhhcccchhhhcc---------------------------------------CCCHHHHHH
Q 023558 218 EELAEKSAPLFLSHFYNIYFSHVAGGQVIERQ---------------------------------------HWTRDEKNK 258 (280)
Q Consensus 218 ~ela~~~P~lLVAHaYtRYLGDLSGGQiI~r~---------------------------------------~Ldeeek~~ 258 (280)
++++..+|..+++|+||+|+|+|+|||||+++ .+|++++++
T Consensus 108 ~~~~~~~p~~~lg~~YV~egs~LgGg~ii~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~w~~f~~~l~~~~l~~~~~~~ 187 (205)
T PF01126_consen 108 RELAESSPALLLGHAYVLEGSTLGGGQIIRRLLARHLGLPEGFGGLSFFSFGGIEDTGALWRAFRAALDAAALTEEERDE 187 (205)
T ss_dssp HHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT-BTTBCSGGGGH-TTSSSHHHHHHHHHHHHHHS---HHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCCcccccccCCCCcccHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999999999999995 689999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023558 259 SLKEAAKSFKFLGQIVRL 276 (280)
Q Consensus 259 iIeEA~~AF~lN~~Ifr~ 276 (280)
||+||+.+|++|++||+.
T Consensus 188 ii~~A~~~F~~~~~~~~~ 205 (205)
T PF01126_consen 188 IIEEAKAAFRLNIAWFRE 205 (205)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999999974
No 5
>cd00232 HemeO Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes bacterial HO, as well as the mammalian isoforms HO-1, and HO-2. Heme oxygenases play key roles in heme homeostasis, oxidative stress response, photosynthetic pigment formation in cyanobacteria, cellular signaling in mammals, and iron acquisition from host heme by bacterial pathogens.
Probab=99.95 E-value=4.6e-27 Score=202.96 Aligned_cols=163 Identities=25% Similarity=0.406 Sum_probs=140.4
Q ss_pred chHHHHHHHHhHhcccCCCCCCCCCCCCCCCCCCCCCcchhhhhhhccCCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Q 023558 88 GITEEMRFVAMRLRNLKGKKYPSSPHNSNSDCEDSSNDDVEHEQEVKQDNDGETWKPSMDAFVKYLVDSQLVFNTIERIV 167 (280)
Q Consensus 88 g~~eEmRfvaMrl~~~~q~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~w~~s~e~Y~~lL~~ly~VY~ALE~av 167 (280)
+|.+.||+.-+.+|.+-.+.. ..+...++.++.+.|+++|.++|.+|.+||.++
T Consensus 1 ~~~~~Lr~~T~~~H~~~e~~~--------------------------~~~~l~~~~~s~~~Y~~~L~~~~~~~~~lE~~l 54 (203)
T cd00232 1 SLSEELRAATRQLHEEAENLV--------------------------FMKDLLKGFLSREGYARFLANLYLVYRALEALL 54 (203)
T ss_pred CHHHHHHHHHHHHHHHHHchH--------------------------HHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999997654221 112245789999999999999999999999999
Q ss_pred HhcCC-cccccccCCCccchHHHHHHHHHHhhcCCC-CCCCCchHHHHHHHHHHHHhcCcchhHhHHHHHHhhhcccchh
Q 023558 168 DDSND-VAYAYFRKTGLERSEGISRDLEWFSEQGII-IPEPSTPGVSYAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQV 245 (280)
Q Consensus 168 ~~~~d-p~~a~f~~peL~Rs~aLekDL~~f~G~~~~-~p~P~pat~~Yv~rL~ela~~~P~lLVAHaYtRYLGDLSGGQi 245 (280)
+++.+ +..+.+..+++.|++.|++||++|.|.... ...|.+++ .|+++|...+..+|..+++|+||+|+|+|||||+
T Consensus 55 ~~~~~~~~~~~~~~~~~~r~~~L~~DL~~lg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~YV~egs~l~GG~~ 133 (203)
T cd00232 55 EASKDNPYLAPLYLPELERAAALEKDLAYLGGSDWRVREPPLPAA-AYAARLREIAEENPALLLGHAYVRYGADLSGGQV 133 (203)
T ss_pred HHccCCcccccccCccccchHHHHHHHHHHhCCCccccCCCChHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccHH
Confidence 99976 444568899999999999999999887633 33445555 9999999999999999999999999999999999
Q ss_pred hhcc-------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023558 246 IERQ-------------------------------------HWTRDEKNKSLKEAAKSFKFLGQIVRLI 277 (280)
Q Consensus 246 I~r~-------------------------------------~Ldeeek~~iIeEA~~AF~lN~~Ifr~I 277 (280)
|+++ .+|++++++||+||+.+|++|.+||+.|
T Consensus 134 i~~~l~~~~~~~~~~~~f~~~~g~~~~~~~w~~f~~~l~~~~~~~~~~~~~i~~A~~~F~~~~~~~~~~ 202 (203)
T cd00232 134 LAKIAQRALLLEGKGLAFYAFHGIADRGLFKREFREALDALPLDEEERQRVVAEARAAFRLNGQVFREL 202 (203)
T ss_pred HHHHHHHHhCCCCccCccccCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9877 7899999999999999999999999976
No 6
>KOG4480 consensus Heme oxygenase [Inorganic ion transport and metabolism]
Probab=99.45 E-value=2e-13 Score=127.58 Aligned_cols=140 Identities=12% Similarity=0.069 Sum_probs=116.2
Q ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccccCC---CccchHHHHHHHHHHhhcCCCCCCC-CchHHHH
Q 023558 139 GETWKPSMDAFVKYLVDSQLVFNTIERIVDDSND-VAYAYFRKT---GLERSEGISRDLEWFSEQGIIIPEP-STPGVSY 213 (280)
Q Consensus 139 ~~~w~~s~e~Y~~lL~~ly~VY~ALE~av~~~~d-p~~a~f~~p---eL~Rs~aLekDL~~f~G~~~~~p~P-~pat~~Y 213 (280)
+.+...+.+.+..-...+++.|.+++.......+ +.+.+.++| +|+|.+++++|+++|+|.+|....+ .|+.+.|
T Consensus 39 ~~~~n~t~~l~~~~t~a~~~~~~~y~~e~~~~~E~~~F~~~~f~~~~el~e~~a~~~d~~~~~~~~W~e~ie~~pa~~ky 118 (283)
T KOG4480|consen 39 LLKGNVTPELVQLSTAALYFWYKAYPGETEGFKEEMRFVAMRFPSTEELHEKEALEQDPEEFFGENWEETIEGEPAYQKY 118 (283)
T ss_pred HhhcCCchHHHHHHHHHHHHHHHhCcchhhhhhHHHhhHhhhcCCHHHHhHHhhhhcChhhhccccccccccCCHHHHHH
Confidence 5678899999998899999999999998888877 666666666 8999999999999999999654444 4677899
Q ss_pred HHHHHHHHhcCcchhHhHHHHHHhhhcccc-----hhhhccCCCH-------------------------HHHHHHHHHH
Q 023558 214 AKYLEELAEKSAPLFLSHFYNIYFSHVAGG-----QVIERQHWTR-------------------------DEKNKSLKEA 263 (280)
Q Consensus 214 v~rL~ela~~~P~lLVAHaYtRYLGDLSGG-----QiI~r~~Lde-------------------------eek~~iIeEA 263 (280)
+.|++.++.+.|.+|++|+|+||+|++||| |+...++|+- ..-+++|.|+
T Consensus 119 l~~~~~v~~t~e~ll~~s~~~~Y~g~~s~GLek~~q~~~dl~w~~~q~~~~pe~~~a~k~~~~y~k~~~E~~pq~~I~~~ 198 (283)
T KOG4480|consen 119 LVDSKLVADTEEELLVASAYTRYAGLLSGGLEKAEQKELDLPWTGEQFYTFPELANAGKTYQKYLKNNLELDPQRFICEF 198 (283)
T ss_pred HHHHHHHHHhhhHHHHHhhHHHHHHhhccHHHHHHHHHhhcchhhhhccccCCCCcHHHHHHHHHHHhhccChhHHHHHH
Confidence 999999999999999999999999999999 3333331111 1228899999
Q ss_pred HHHHHHHHHHHHHHH
Q 023558 264 AKSFKFLGQIVRLII 278 (280)
Q Consensus 264 ~~AF~lN~~Ifr~I~ 278 (280)
..+|-.|+++|+-|-
T Consensus 199 ~~iyf~~~~~f~~~~ 213 (283)
T KOG4480|consen 199 YNIYFAHIAGFQMLG 213 (283)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999997653
No 7
>COG3230 HemO Heme oxygenase [Inorganic ion transport and metabolism]
Probab=90.81 E-value=4.9 Score=36.77 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=80.7
Q ss_pred CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCC-ccchHHHHHHHHHHhhcC---CCCC---CCCc-
Q 023558 137 NDGETWKPSMDAFVKYLVDSQLVFNTIERIVDDSNDVAYAYFRKTG-LERSEGISRDLEWFSEQG---IIIP---EPST- 208 (280)
Q Consensus 137 ~~~~~w~~s~e~Y~~lL~~ly~VY~ALE~av~~~~dp~~a~f~~pe-L~Rs~aLekDL~~f~G~~---~~~p---~P~p- 208 (280)
-+..+=.+|++.|++++.-.|.+-..||.+++...=| +.|..++ +.|...|+.||.-+ |.. .+.| .|..
T Consensus 30 v~~~~pf~sr~nyl~f~~~q~~f~~~Le~~~r~~~l~--~~lp~l~~r~r~~~l~~DLadl-G~~~~~~d~p~~~~~~t~ 106 (196)
T COG3230 30 VPSVQPFLSRRNYLKFLKRQYLFHKPLEHILRDAELP--KALPELEYRARYDALEQDLADL-GEEPPKFDKPRCEPPLTL 106 (196)
T ss_pred ccccCccccHHHHHHHHHHHHHHhhhHHHHHccccch--hhcccHHHHHHHHHHHHHHHHh-CCCCCccccccccCCchh
Confidence 3445557899999999999999999999999763222 3344444 77899999999987 432 1222 1111
Q ss_pred hHH----HHHHHHHHHHhc------CcchhHhHHHHHHhhhcccchhhhcc---------CCCHHHHHHHHHHHHHHHHH
Q 023558 209 PGV----SYAKYLEELAEK------SAPLFLSHFYNIYFSHVAGGQVIERQ---------HWTRDEKNKSLKEAAKSFKF 269 (280)
Q Consensus 209 at~----~Yv~rL~ela~~------~P~lLVAHaYtRYLGDLSGGQiI~r~---------~Ldeeek~~iIeEA~~AF~l 269 (280)
+.. .||.-=..++.. .+-.+.--+=.|||+--=+|+-.+-+ .+++|+..+.++=|..+|..
T Consensus 107 ~aea~GwlYV~EGstLGaAfL~K~aa~L~l~~e~garhLag~~~grG~~WrsF~e~L~~~~l~~E~e~~av~gA~~aF~~ 186 (196)
T COG3230 107 AAEAFGWLYVAEGSTLGAAFLFKHAAKLGLNPEFGARHLAGYGDGRGKRWRSFVEHLDAINLTPEAEAEAVAGARAAFAA 186 (196)
T ss_pred HHHhhhhhhhccccchHHHHHHHHHHHhcCCcccchHhhcCCCCCCCccHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 111 344321111110 00111111223444444344322222 79999999999999999987
Q ss_pred HHHHHH
Q 023558 270 LGQIVR 275 (280)
Q Consensus 270 N~~Ifr 275 (280)
=..+++
T Consensus 187 fr~~l~ 192 (196)
T COG3230 187 FRRVLQ 192 (196)
T ss_pred HHHHHH
Confidence 665544
No 8
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=52.33 E-value=13 Score=30.92 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=9.8
Q ss_pred ccCHHHHHHHHHHHHHHHHH
Q 023558 143 KPSMDAFVKYLVDSQLVFNT 162 (280)
Q Consensus 143 ~~s~e~Y~~lL~~ly~VY~A 162 (280)
...+-.|.....-+-.||..
T Consensus 40 e~p~p~fgea~~~~~~v~rY 59 (101)
T PF09026_consen 40 EVPVPEFGEAMAYFTMVKRY 59 (101)
T ss_dssp ------HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHhhcchHhhh
Confidence 55566677777776667665
No 9
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=43.11 E-value=89 Score=26.75 Aligned_cols=86 Identities=17% Similarity=0.148 Sum_probs=46.2
Q ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHH----hcCCcccc-cc---cCCCccchHHHHHHHHHHhhcCCC---CCCCC
Q 023558 139 GETWKPSMDAFVKYLVDSQLVFNTIERIVD----DSNDVAYA-YF---RKTGLERSEGISRDLEWFSEQGII---IPEPS 207 (280)
Q Consensus 139 ~~~w~~s~e~Y~~lL~~ly~VY~ALE~av~----~~~dp~~a-~f---~~peL~Rs~aLekDL~~f~G~~~~---~p~P~ 207 (280)
.+.|.++.+.|..+|.|=++.-...=+++. +..++... .+ ....+...-.+-.++.--+|-+.. ...|+
T Consensus 20 l~~GtL~~~~f~~Yl~QD~~yl~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~~~~~~~~ 99 (210)
T PF03070_consen 20 LADGTLPKEAFRYYLIQDYHYLKHFARALALLASKAPDPEEQRELLSRLIQEIEEELELHEDFAEELGISREDLENIEPS 99 (210)
T ss_dssp HHTTESEHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHSTC-
T ss_pred HhCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhhh
Confidence 356799999999999887765554444433 33332211 11 011111111222222222333322 35688
Q ss_pred chHHHHHHHHHHHHhcC
Q 023558 208 TPGVSYAKYLEELAEKS 224 (280)
Q Consensus 208 pat~~Yv~rL~ela~~~ 224 (280)
|++..|+++|..++...
T Consensus 100 p~~~~y~~~l~~~a~~~ 116 (210)
T PF03070_consen 100 PATRAYTDFLLSLAQTG 116 (210)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhccC
Confidence 99999999999998643
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=42.60 E-value=15 Score=34.68 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=25.3
Q ss_pred HhHHHHHHhhhcccchh----hhcc---------------CCCHHHHHHHHH
Q 023558 229 LSHFYNIYFSHVAGGQV----IERQ---------------HWTRDEKNKSLK 261 (280)
Q Consensus 229 VAHaYtRYLGDLSGGQi----I~r~---------------~Ldeeek~~iIe 261 (280)
++|....|=+.|||||- |+|- .||+|...++++
T Consensus 126 L~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~ 177 (240)
T COG1126 126 LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLD 177 (240)
T ss_pred chhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHH
Confidence 56778889999999993 2222 789998888775
No 11
>PF14246 TetR_C_7: AefR-like transcriptional repressor, C-terminal region; PDB: 3BHQ_B 3CDL_A.
Probab=41.46 E-value=24 Score=24.38 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=21.6
Q ss_pred Hhhhcccchhhhcc-----CCCHHHHHHHHHHHHHHHH
Q 023558 236 YFSHVAGGQVIERQ-----HWTRDEKNKSLKEAAKSFK 268 (280)
Q Consensus 236 YLGDLSGGQiI~r~-----~Ldeeek~~iIeEA~~AF~ 268 (280)
++|.+-|+.....+ ..|+++++++|+++...|-
T Consensus 15 f~~l~~g~~~~~~llg~~~~~s~~e~~~~v~~aV~~FL 52 (55)
T PF14246_consen 15 FLGLLKGDLFWPALLGLAPPPSAEEIERIVESAVDMFL 52 (55)
T ss_dssp HHHHHHHHHCHHHHHHTS----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHH
Confidence 45555555443333 6789999999999999984
No 12
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=35.27 E-value=8.5 Score=40.23 Aligned_cols=21 Identities=29% Similarity=0.263 Sum_probs=18.7
Q ss_pred chhHhHHHHHHhhhcccchhh
Q 023558 226 PLFLSHFYNIYFSHVAGGQVI 246 (280)
Q Consensus 226 ~lLVAHaYtRYLGDLSGGQiI 246 (280)
-.|.+|++|.-+-||||||--
T Consensus 691 fGL~sHAHTikikdLSGGQKa 711 (807)
T KOG0066|consen 691 FGLASHAHTIKIKDLSGGQKA 711 (807)
T ss_pred hhhhhccceEeeeecCCcchH
Confidence 479999999999999999943
No 13
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=29.89 E-value=25 Score=33.95 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=26.4
Q ss_pred hHHHHHHhhhcccchhhhcc-------------------CCCHHHHHHHHHHHHH
Q 023558 230 SHFYNIYFSHVAGGQVIERQ-------------------HWTRDEKNKSLKEAAK 265 (280)
Q Consensus 230 AHaYtRYLGDLSGGQiI~r~-------------------~Ldeeek~~iIeEA~~ 265 (280)
.|...+|.+.|||||--+-. .||...++.+++--+.
T Consensus 131 ~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~ 185 (343)
T TIGR02314 131 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKE 185 (343)
T ss_pred chhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 56677899999999932111 8999999988765543
No 14
>cd01068 sensor_globin Globin domain present in Globin-Coupled-Sensors (GCS). These domains detect changes in intracellular concentrations of oxygen, carbon monoxyde, or nitrous oxide, which result in aerotaxis and/or gene regulation. One subgroup, the HemATs, are aerotactic heme sensors combining a globin with an MCP signaling domain, others function as gene regulators, by direct combination with DNA-binding domains, with domains modulating 2nd messengers, or with domains interacting with transcription factors or regulators.
Probab=28.66 E-value=1.7e+02 Score=23.74 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhc-----CcchhHhHHHHHHhhhcccchhhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 023558 211 VSYAKYLEELAEK-----SAPLFLSHFYNIYFSHVAGGQVIERQHWTRDEKNKSLKEAAKSFKFLGQIV 274 (280)
Q Consensus 211 ~~Yv~rL~ela~~-----~P~lLVAHaYtRYLGDLSGGQiI~r~~Ldeeek~~iIeEA~~AF~lN~~If 274 (280)
.+|+++...++.. =|+.++--.|..|+..+- +.|.....+++++..++.=..+++.+.++|+
T Consensus 79 ~~y~~~~~~iG~~H~~igl~~~~~~~~~~~~~~~l~--~~l~~~~~~~~~~~~~~~al~k~~~~d~~l~ 145 (147)
T cd01068 79 EAYIAQRVRIGEVHARIGLEPKWYLGGYAVLLELLI--GALRESILSADELAQALRALIKLLDLDMDLV 145 (147)
T ss_pred HHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH--HHHHHHccCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899998888763 234444447778887776 4555556688999999999999999998875
No 15
>PF15603 Imm45: Immunity protein 45
Probab=27.52 E-value=52 Score=26.21 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 023558 250 HWTRDEKNKSLKEAAKSFK 268 (280)
Q Consensus 250 ~Ldeeek~~iIeEA~~AF~ 268 (280)
++|.+++++||+++..-|.
T Consensus 55 ~it~~e~q~II~aI~~~~~ 73 (82)
T PF15603_consen 55 PITIAERQKIIEAIEKYFS 73 (82)
T ss_pred ccCHHHHHHHHHHHHHHHh
Confidence 7899999999999998875
No 16
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=26.80 E-value=41 Score=32.84 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=28.5
Q ss_pred hHHHHHHhhhcccchhhhc----c---------------CCCHHHHHHHHHHHHHH
Q 023558 230 SHFYNIYFSHVAGGQVIER----Q---------------HWTRDEKNKSLKEAAKS 266 (280)
Q Consensus 230 AHaYtRYLGDLSGGQiI~r----~---------------~Ldeeek~~iIeEA~~A 266 (280)
.+...+|.+.|||||-=+- . .||...++.+.++....
T Consensus 120 ~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l 175 (363)
T TIGR01186 120 EEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKL 175 (363)
T ss_pred chhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 6778999999999993111 1 88999999988877643
No 17
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.61 E-value=33 Score=33.96 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=24.6
Q ss_pred hHHHHHHhhhcccchh----hhcc---------------CCCHHHHHHHHH
Q 023558 230 SHFYNIYFSHVAGGQV----IERQ---------------HWTRDEKNKSLK 261 (280)
Q Consensus 230 AHaYtRYLGDLSGGQi----I~r~---------------~Ldeeek~~iIe 261 (280)
++.-.+|=+.|||||- |+|- .||+++-+.||+
T Consensus 132 ~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~ 182 (339)
T COG1135 132 SDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182 (339)
T ss_pred hhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHH
Confidence 4777899999999992 2221 789998888876
No 18
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=25.63 E-value=45 Score=28.81 Aligned_cols=37 Identities=8% Similarity=0.031 Sum_probs=26.9
Q ss_pred HhHHHHHHhhhcccchhhhcc-------------------CCCHHHHHHHHHHHHH
Q 023558 229 LSHFYNIYFSHVAGGQVIERQ-------------------HWTRDEKNKSLKEAAK 265 (280)
Q Consensus 229 VAHaYtRYLGDLSGGQiI~r~-------------------~Ldeeek~~iIeEA~~ 265 (280)
+.+...++.+.|||||.-+-. +||.+.++.+++--..
T Consensus 122 l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 177 (222)
T cd03224 122 LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRE 177 (222)
T ss_pred hhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHH
Confidence 467778899999999942211 8899988887765543
No 19
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=25.41 E-value=39 Score=32.86 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=28.6
Q ss_pred HhHHHHHHhhhcccchhhhcc-------------------CCCHHHHHHHHHHHHHH
Q 023558 229 LSHFYNIYFSHVAGGQVIERQ-------------------HWTRDEKNKSLKEAAKS 266 (280)
Q Consensus 229 VAHaYtRYLGDLSGGQiI~r~-------------------~Ldeeek~~iIeEA~~A 266 (280)
+.|.-.|+.+.|||||--+-. .||...|..+.++-...
T Consensus 127 L~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l 183 (362)
T TIGR03258 127 LGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAAL 183 (362)
T ss_pred CCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 367778999999999932111 88999999988877643
No 20
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=25.25 E-value=43 Score=32.39 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=27.1
Q ss_pred hHHHHHHhhhcccchhhhcc-------------------CCCHHHHHHHHHHHHH
Q 023558 230 SHFYNIYFSHVAGGQVIERQ-------------------HWTRDEKNKSLKEAAK 265 (280)
Q Consensus 230 AHaYtRYLGDLSGGQiI~r~-------------------~Ldeeek~~iIeEA~~ 265 (280)
.|...++.+.|||||.-+-. +||...++.+.+.-..
T Consensus 124 ~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~ 178 (369)
T PRK11000 124 AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 178 (369)
T ss_pred hhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 57778999999999932211 8899999888776554
No 21
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.11 E-value=41 Score=29.01 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=23.8
Q ss_pred hHHHHHHhhhcccchhhhcc-------------------CCCHHHHHHHHHHHH
Q 023558 230 SHFYNIYFSHVAGGQVIERQ-------------------HWTRDEKNKSLKEAA 264 (280)
Q Consensus 230 AHaYtRYLGDLSGGQiI~r~-------------------~Ldeeek~~iIeEA~ 264 (280)
.+...++.+.|||||.-+-. +||.+.+..+.+--.
T Consensus 121 ~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~ 174 (213)
T cd03259 121 EGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELK 174 (213)
T ss_pred hhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 34556777899999932211 889888887765443
No 22
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=24.99 E-value=75 Score=31.24 Aligned_cols=52 Identities=25% Similarity=0.232 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCcchhHhHHHHHHhhhcccchh----hhcc---------------CCCHHHHHHHHHHHHHHH
Q 023558 213 YAKYLEELAEKSAPLFLSHFYNIYFSHVAGGQV----IERQ---------------HWTRDEKNKSLKEAAKSF 267 (280)
Q Consensus 213 Yv~rL~ela~~~P~lLVAHaYtRYLGDLSGGQi----I~r~---------------~Ldeeek~~iIeEA~~AF 267 (280)
--.|++++++. +=|.|.-.||-..|||||. |+|- +||..-|..+..|-++.-
T Consensus 110 i~~rV~eva~~---L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh 180 (338)
T COG3839 110 IDKRVKEVAKL---LGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLH 180 (338)
T ss_pred HHHHHHHHHHH---cCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHH
Confidence 45677777653 6688999999999999996 3322 678888888888877643
No 23
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=24.59 E-value=36 Score=32.67 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=16.3
Q ss_pred hhhhhhhcccccCCCCccch
Q 023558 70 MRKKKRVRYRREYPGESKGI 89 (280)
Q Consensus 70 ~~~~~~~r~~~~~pge~kg~ 89 (280)
..|+=|++-||+|||-.+|+
T Consensus 177 La~~vR~~LRk~~~~~~~gi 196 (263)
T COG1179 177 LAAKVRRKLRKRFPKIKFGV 196 (263)
T ss_pred HHHHHHHHHHHhccCCccCC
Confidence 44557888899999999987
No 24
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=23.53 E-value=40 Score=31.28 Aligned_cols=36 Identities=8% Similarity=0.067 Sum_probs=25.9
Q ss_pred HhHHHHHHhhhcccchhhhcc-------------------CCCHHHHHHHHHHHH
Q 023558 229 LSHFYNIYFSHVAGGQVIERQ-------------------HWTRDEKNKSLKEAA 264 (280)
Q Consensus 229 VAHaYtRYLGDLSGGQiI~r~-------------------~Ldeeek~~iIeEA~ 264 (280)
+.+...++.+.|||||--+-. +||...++.+.+--.
T Consensus 125 l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 179 (303)
T TIGR01288 125 LESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLR 179 (303)
T ss_pred ChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 356778889999999942211 899998887766443
No 25
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=23.14 E-value=55 Score=31.63 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=29.2
Q ss_pred HhHHHHHHhhhcccchhhhcc-------------------CCCHHHHHHHHHHHHHHH
Q 023558 229 LSHFYNIYFSHVAGGQVIERQ-------------------HWTRDEKNKSLKEAAKSF 267 (280)
Q Consensus 229 VAHaYtRYLGDLSGGQiI~r~-------------------~Ldeeek~~iIeEA~~AF 267 (280)
+.|.-.||...|||||.-+-. .||...|..+.++-+...
T Consensus 124 L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~ 181 (353)
T TIGR03265 124 LPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181 (353)
T ss_pred CCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 356678999999999932211 889999999888877543
No 26
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=22.00 E-value=46 Score=31.50 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=14.1
Q ss_pred hHHHHHHhhhcccchh
Q 023558 230 SHFYNIYFSHVAGGQV 245 (280)
Q Consensus 230 AHaYtRYLGDLSGGQi 245 (280)
.|.-.|=+|.|||||.
T Consensus 130 ~~~~~r~i~~LSGGQ~ 145 (254)
T COG1121 130 EDLRDRQIGELSGGQK 145 (254)
T ss_pred hhhhCCcccccCcHHH
Confidence 3888999999999995
No 27
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=21.77 E-value=51 Score=28.50 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=22.5
Q ss_pred hHHHHHHhhhcccchhhhcc-------------------CCCHHHHHHHHHH
Q 023558 230 SHFYNIYFSHVAGGQVIERQ-------------------HWTRDEKNKSLKE 262 (280)
Q Consensus 230 AHaYtRYLGDLSGGQiI~r~-------------------~Ldeeek~~iIeE 262 (280)
.+...++.+.|||||.-+-. +||.+.++.+.+=
T Consensus 131 ~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~ 182 (218)
T cd03255 131 GDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMEL 182 (218)
T ss_pred chhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 34557788999999932211 7888888776543
No 28
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=21.74 E-value=50 Score=29.21 Aligned_cols=35 Identities=9% Similarity=0.004 Sum_probs=24.3
Q ss_pred hHHHHHHhhhcccchhhhcc-------------------CCCHHHHHHHHHHHH
Q 023558 230 SHFYNIYFSHVAGGQVIERQ-------------------HWTRDEKNKSLKEAA 264 (280)
Q Consensus 230 AHaYtRYLGDLSGGQiI~r~-------------------~Ldeeek~~iIeEA~ 264 (280)
.+...++.+.|||||.-+-. +||...++.+.+--.
T Consensus 105 ~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 158 (230)
T TIGR01184 105 TEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELM 158 (230)
T ss_pred HHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHH
Confidence 45667788999999942211 889888887765443
No 29
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=21.25 E-value=49 Score=30.03 Aligned_cols=33 Identities=12% Similarity=-0.028 Sum_probs=23.1
Q ss_pred hHHHHHHhhhcccchhhhcc-------------------CCCHHHHHHHHHH
Q 023558 230 SHFYNIYFSHVAGGQVIERQ-------------------HWTRDEKNKSLKE 262 (280)
Q Consensus 230 AHaYtRYLGDLSGGQiI~r~-------------------~Ldeeek~~iIeE 262 (280)
.|...++.+.|||||.-+-. +||...+..+++-
T Consensus 134 ~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 185 (269)
T PRK11831 134 RGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKL 185 (269)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 45667788999999932211 8898888866543
No 30
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=20.94 E-value=2.2e+02 Score=28.64 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=43.4
Q ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHH----HHhcCCcc-cccccCCCccchHHHHHHHHH---HhhcCCCCCCCCchH
Q 023558 139 GETWKPSMDAFVKYLVDSQLVFNTIERI----VDDSNDVA-YAYFRKTGLERSEGISRDLEW---FSEQGIIIPEPSTPG 210 (280)
Q Consensus 139 ~~~w~~s~e~Y~~lL~~ly~VY~ALE~a----v~~~~dp~-~a~f~~peL~Rs~aLekDL~~---f~G~~~~~p~P~pat 210 (280)
.+.+.++.+.|..||.|=|+-....=++ +.+..+.. ...|. ..+. ..|+.-+.+ |. .+.....|.|++
T Consensus 37 l~~GtL~~~~F~~Yl~QD~~Yl~~~~r~~a~~~~ka~~~~~~~~~~-~~~~--~~~~~e~~~h~~~~-~~~~~~~~~p~~ 112 (504)
T PTZ00347 37 LGDGTLDQNAFRTYIAQDTLYLNGYIRILSYCITKSDVTATGGGLL-ELLK--GVLEELKNCHHHYI-DNPDAAGPEAAC 112 (504)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH-HHHH--HHHHHHHHHHHHHH-hhhhccCCCHHH
Confidence 4788999999999988765444433333 33333321 11111 0011 111111111 11 122234577888
Q ss_pred HHHHHHHHHHHhcC
Q 023558 211 VSYAKYLEELAEKS 224 (280)
Q Consensus 211 ~~Yv~rL~ela~~~ 224 (280)
.+|.++|..++...
T Consensus 113 ~aY~~~l~~~a~~g 126 (504)
T PTZ00347 113 RKYVDFLLASGNAD 126 (504)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999987643
No 31
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=20.70 E-value=49 Score=30.71 Aligned_cols=33 Identities=6% Similarity=-0.052 Sum_probs=24.1
Q ss_pred hHHHHHHhhhcccchhhhcc-------------------CCCHHHHHHHHHH
Q 023558 230 SHFYNIYFSHVAGGQVIERQ-------------------HWTRDEKNKSLKE 262 (280)
Q Consensus 230 AHaYtRYLGDLSGGQiI~r~-------------------~Ldeeek~~iIeE 262 (280)
.|...++.+.|||||.-+-. +||...+..+.+-
T Consensus 115 ~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 166 (302)
T TIGR01188 115 GEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY 166 (302)
T ss_pred hhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 46667889999999942211 8999888877653
No 32
>PF14369 zf-RING_3: zinc-finger
Probab=20.05 E-value=19 Score=24.15 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=9.9
Q ss_pred CCCCccchHHHH
Q 023558 82 YPGESKGITEEM 93 (280)
Q Consensus 82 ~pge~kg~~eEm 93 (280)
.|-=..||||||
T Consensus 24 CP~C~~gFvEei 35 (35)
T PF14369_consen 24 CPRCHGGFVEEI 35 (35)
T ss_pred CcCCCCcEeEeC
Confidence 676778999997
Done!