Your job contains 1 sequence.
>023559
MAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRA
MDDAIREMHGREFGDRVISVNKAQPKMGGEVSDHGYRGGGYSSGGRGSYGADRPGGQDDC
FKCGRPGHWARDCPSAVGGRGGAGGSFSSRSRFGGVGVRGDYLGGGRDRYIDDRYDGGRY
GDRDRYDSKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGAR
AGSDRYASGGPARDDGRGYRSRAAPYDRPSRGDRPSFDRY
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023559
(280 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2036520 - symbol:AtRZ-1b "AtRZ-1b" species:370... 440 1.3e-65 2
TAIR|locus:2179939 - symbol:AtRZ-1c "AtRZ-1c" species:370... 430 1.1e-64 2
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido... 314 9.4e-40 2
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 185 3.9e-24 2
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 231 2.6e-23 2
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 223 4.3e-23 2
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin... 187 4.2e-21 2
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 175 2.8e-20 2
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei... 153 5.5e-20 2
UNIPROTKB|F1RQ90 - symbol:RBMX "Uncharacterized protein" ... 153 7.2e-20 2
UNIPROTKB|Q4R7F0 - symbol:RBMX "RNA-binding motif protein... 153 7.3e-20 2
UNIPROTKB|D3JUI8 - symbol:RBMX "RNA-binding motif protein... 153 7.3e-20 2
UNIPROTKB|P38159 - symbol:RBMX "RNA-binding motif protein... 153 7.3e-20 2
UNIPROTKB|A5A6M3 - symbol:RBMX "RNA-binding motif protein... 153 7.3e-20 2
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 205 7.3e-20 2
UNIPROTKB|E2R068 - symbol:RBMX "Uncharacterized protein" ... 153 7.3e-20 2
UNIPROTKB|Q96E39 - symbol:RBMXL1 "RNA binding motif prote... 151 1.8e-19 2
RGD|1565256 - symbol:Rbmx "RNA binding motif protein, X-l... 153 1.9e-19 2
MGI|MGI:1343044 - symbol:Rbmx "RNA binding motif protein,... 153 1.9e-19 2
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 167 2.4e-19 2
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 165 2.4e-19 2
ZFIN|ZDB-GENE-030131-579 - symbol:rbmx "RNA binding motif... 157 2.5e-19 2
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 166 3.1e-19 2
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 167 6.4e-19 2
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 163 6.4e-19 2
UNIPROTKB|F1NZD3 - symbol:RBMX "Uncharacterized protein" ... 153 7.5e-19 2
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 170 8.1e-19 2
RGD|1306751 - symbol:Rbmxrtl "RNA binding motif protein, ... 149 1.1e-18 2
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 165 1.3e-18 2
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 165 1.3e-18 2
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 165 1.3e-18 2
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 165 1.3e-18 2
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 171 1.7e-18 2
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 165 1.7e-18 2
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 162 1.7e-18 2
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 165 2.1e-18 2
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 165 2.1e-18 2
RGD|1585845 - symbol:Rbmxl1 "RNA binding motif protein, X... 149 3.5e-18 2
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi... 165 6.1e-18 2
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 159 8.9e-18 2
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 159 8.9e-18 2
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 162 1.4e-17 2
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 158 1.4e-17 2
UNIPROTKB|H0Y6E7 - symbol:RBMX "RNA-binding motif protein... 153 1.6e-17 2
UNIPROTKB|H3BT71 - symbol:RBMX "RNA-binding motif protein... 153 1.8e-17 2
UNIPROTKB|K7GRX3 - symbol:RBMX "Uncharacterized protein" ... 153 2.2e-17 2
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 165 3.7e-17 2
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 164 3.7e-17 2
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 164 3.7e-17 2
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 164 3.7e-17 2
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin... 162 3.7e-17 2
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein... 145 6.0e-17 2
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 165 3.5e-16 2
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 170 4.6e-16 2
TAIR|locus:2027438 - symbol:GR-RBP6 "glycine-rich RNA-bin... 171 5.2e-16 2
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"... 159 5.2e-16 2
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 162 5.6e-16 2
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 168 6.5e-16 2
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 160 6.6e-16 2
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 168 7.0e-16 2
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 168 7.2e-16 2
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 168 7.2e-16 2
TAIR|locus:2147625 - symbol:AT5G19960 species:3702 "Arabi... 168 1.0e-15 2
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3... 155 1.1e-15 2
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 160 1.5e-15 2
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 173 2.8e-15 2
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 153 3.8e-15 2
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 177 4.5e-15 2
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 168 5.5e-15 2
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 189 6.9e-15 1
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 166 7.0e-15 2
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 161 7.1e-15 2
UNIPROTKB|I3LH22 - symbol:LOC100514264 "Uncharacterized p... 139 7.2e-15 2
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 167 8.9e-15 2
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 186 1.4e-14 1
UNIPROTKB|A9UMT9 - symbol:LOC100135403 "LOC100135403 prot... 147 2.0e-14 2
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 164 2.3e-14 2
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 184 2.3e-14 1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ... 153 2.4e-14 2
MGI|MGI:1355299 - symbol:Hnrpdl "heterogeneous nuclear ri... 159 2.8e-14 2
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 170 2.8e-14 2
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 158 2.8e-14 2
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 165 4.8e-14 2
WB|WBGene00004703 - symbol:rsp-6 species:6239 "Caenorhabd... 131 4.9e-14 2
UNIPROTKB|Q18409 - symbol:rsp-6 "Probable splicing factor... 131 4.9e-14 2
UNIPROTKB|A6H6Y0 - symbol:HNRNPD "Uncharacterized protein... 161 7.1e-14 2
UNIPROTKB|E2RIX2 - symbol:HNRNPD "Uncharacterized protein... 161 7.1e-14 2
UNIPROTKB|Q14103 - symbol:HNRNPD "Heterogeneous nuclear r... 161 7.1e-14 2
MGI|MGI:101947 - symbol:Hnrnpd "heterogeneous nuclear rib... 161 7.1e-14 2
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 174 7.5e-14 2
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 165 8.0e-14 2
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 164 1.0e-13 2
RGD|620365 - symbol:Hnrpd "heterogeneous nuclear ribonucl... 159 1.2e-13 2
UNIPROTKB|Q9JJ54 - symbol:Hnrnpd "Heterogeneous nuclear r... 159 1.2e-13 2
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 154 1.2e-13 2
UNIPROTKB|Q6K9C3 - symbol:RSZ23 "Serine/arginine-rich spl... 116 1.3e-13 3
UNIPROTKB|Q6IRQ4 - symbol:rbmx "RNA-binding motif protein... 147 1.3e-13 2
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 150 1.4e-13 2
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 158 1.4e-13 2
RGD|1309950 - symbol:Hnrpdl "heterogeneous nuclear ribonu... 156 1.5e-13 2
WARNING: Descriptions of 1094 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2036520 [details] [associations]
symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
Length = 292
Score = 440 (159.9 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 83/132 (62%), Positives = 97/132 (73%)
Query: 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD 62
G E+RIFVGGLSW+VTERQLE+ FDR+GKI ECQIM+ RD+GRPRGFGFIT+ DRR D
Sbjct: 8 GNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGAD 67
Query: 63 DAIREMHGREFGDRVISVNKAQPKMGGEVSDHXXXXXXXXXXXXXXXXADRPGGQDDCFK 122
DAI+ MHGRE G++VISVNKA+PK+GGE D G +D+CFK
Sbjct: 68 DAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGK--------GTEDECFK 119
Query: 123 CGRPGHWARDCP 134
C RPGHWARDCP
Sbjct: 120 CRRPGHWARDCP 131
Score = 246 (91.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 51/92 (55%), Positives = 60/92 (65%)
Query: 192 KYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGY-GKERGYERDVGARAGSDRYASGG 250
KY RD Y +RY P GDR DRYG + + N Y G+ER Y+RD AR SDRY G
Sbjct: 201 KYEPRDHYPFERYAPPGDRFVSDRYGMPEHHLENEYRGRERSYDRDRYARDTSDRYGDMG 260
Query: 251 PARDDGRGYRSRAAPYDRPSR-GDRPS-FDRY 280
P RD+GR YRSR PYDRPSR G RPS ++R+
Sbjct: 261 PIRDEGRPYRSRPGPYDRPSRPGGRPSSYERW 292
Score = 84 (34.6 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 31/86 (36%), Positives = 37/86 (43%)
Query: 196 RDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDD 255
R+R+ R P A GD G DRY +ER ER+ DRY G RD
Sbjct: 137 RERF---RVPLAMRSRIGDIDGHRDRYGDRDLEREREREREF------DRYMDGRRDRDG 187
Query: 256 GR-GYRSRAAPYDRPSRGDRPSFDRY 280
GR YR R D+ D F+RY
Sbjct: 188 GRYSYRDRFDSGDKYEPRDHYPFERY 213
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 430 (156.4 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 84/142 (59%), Positives = 102/142 (71%)
Query: 1 MAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRA 60
MA K+ +RIFVGGLS VT+R LE AF RFG I++CQIMLERD+GR RGFGFIT+ADRRA
Sbjct: 1 MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60
Query: 61 MDDAIREMHGREFGDRVISVNKAQPKMGGEVSD-HXXXXXXXXXXXXXXXXADRPGG--- 116
MD++IREMHGR+FGDRVISVN+A+PK+G + + H + GG
Sbjct: 61 MDESIREMHGRDFGDRVISVNRAEPKLGRDDGESHGSRGGRDSGYSIAGKGSFGGGGGGG 120
Query: 117 ----QDDCFKCGRPGHWARDCP 134
+D+CFKCGR GHWARDCP
Sbjct: 121 GRVGEDECFKCGRVGHWARDCP 142
Score = 247 (92.0 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 61/109 (55%), Positives = 69/109 (63%)
Query: 190 DSK--YGSRDRYVSDRYPPAGDRLAG-DRYG-GSDRYPVNGYGKERGYERDVGARAGSDR 245
DS+ Y RDRY SDRY DR AG DRY GSDRYP Y K R +ERD+ AGSDR
Sbjct: 202 DSREAYIPRDRYASDRYAAPADRFAGGDRYSRGSDRYPPGSYDKARSFERDIAPSAGSDR 261
Query: 246 YA---SGGPAR---DDGRGYRSRA-APYDRPSR----GDRPS---FDRY 280
Y +GGP R ++GRG+RSRA APY+RPSR G PS FDRY
Sbjct: 262 YGGGRAGGPIRGGGEEGRGFRSRAGAPYERPSRSGGGGAYPSSSTFDRY 310
Score = 105 (42.0 bits), Expect = 9.8e-50, Sum P(2) = 9.8e-50
Identities = 31/91 (34%), Positives = 42/91 (46%)
Query: 192 KYGSRDRYVSDRYPPAGDRLAGDRYGGSDRY-PVNGYGKERGYERDVGARAGSDRYASGG 250
+Y R+RY+ DRY A A DR+ + Y P + Y +R Y AG DRY+ G
Sbjct: 177 RYVDRERYIDDRYDGAARYGARDRFDSREAYIPRDRYASDR-YAAPADRFAGGDRYSRGS 235
Query: 251 PARDDGRGYRSRAAPYD-RPSRGDRPSFDRY 280
G ++R+ D PS G DRY
Sbjct: 236 DRYPPGSYDKARSFERDIAPSAGS----DRY 262
Score = 86 (35.3 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
Identities = 34/90 (37%), Positives = 41/90 (45%)
Query: 192 KYGSRDRYVSDRYPPAGDRLAGD-RYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGG 250
+Y RDRYV DR DR G RYG DR+ +E RD R SDRYA+
Sbjct: 171 RYADRDRYV-DRERYIDDRYDGAARYGARDRFD----SREAYIPRD---RYASDRYAAPA 222
Query: 251 PARDDGRGYRSRAAPYDRPSRGDRP-SFDR 279
G Y SR + P D+ SF+R
Sbjct: 223 DRFAGGDRY-SRGSDRYPPGSYDKARSFER 251
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 314 (115.6 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 56/134 (41%), Positives = 85/134 (63%)
Query: 1 MAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRA 60
M+ E R F+GGL+W ++R L +AF+++G ++E +++L++ SGR RGFGFIT+ +++A
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 61 MDDAIREMHGREFGDRVISVNKAQPKMGGEVSDHXXXXXXXXXXXXXXXXADRPGGQDDC 120
MD+AI M+G + R I+V+KAQP GG D+ G DC
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGGDC 120
Query: 121 FKCGRPGHWARDCP 134
FKCG+PGH+AR+CP
Sbjct: 121 FKCGKPGHFARECP 134
Score = 126 (49.4 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 40/92 (43%), Positives = 47/92 (51%)
Query: 188 SKDSKYGSRD-RYVS--DRYPPAGDRLAG--DRYGGSD-RYPV-NGYGKERGYERDVGAR 240
SKD +YG++D RY + DRY DR + DRY D RY +G G G +R G R
Sbjct: 154 SKDDRYGAKDDRYGAKEDRYGAKDDRYSSKDDRYSSKDDRYGSRDGGGSRYGPDRS-GER 212
Query: 241 AGSDRYASGGPARDDGRGYRSRAAPYDRPSRG 272
AG R GG G G R APYDRP G
Sbjct: 213 AGG-RSRDGGSRGAPG-GERHSRAPYDRPRAG 242
Score = 99 (39.9 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 32/85 (37%), Positives = 42/85 (49%)
Query: 188 SKDSKYGSR-DRYVS--DRYPPAGDRLAG--DRYGGSDRYPVNGYGKERGYERDVG-ARA 241
+KD +YG++ DRY + DRY DR + DRYG D + YG +R ER G +R
Sbjct: 161 AKDDRYGAKEDRYGAKDDRYSSKDDRYSSKDDRYGSRDGGG-SRYGPDRSGERAGGRSRD 219
Query: 242 GSDRYASGGPARDDGRGYRSRAAPY 266
G R A GG R RA +
Sbjct: 220 GGSRGAPGGERHSRAPYDRPRAGGF 244
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 185 (70.2 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 34/85 (40%), Positives = 58/85 (68%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++F+GGLS++ TE+ LE AF ++G I + ++ +R++ R RGFGF+T+ + DA
Sbjct: 21 DEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDA 80
Query: 65 IREMHGREFGDRVISVNKAQPKMGG 89
+ M+G++ R+I V++A K GG
Sbjct: 81 MAAMNGKQVDGRMIRVDEAG-KSGG 104
Score = 106 (42.4 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
Identities = 39/96 (40%), Positives = 42/96 (43%)
Query: 193 YGSRDRYVSDRYPPAGDR-LAGDR-YGGSDRYPVNGYGK-ERGY---ERDVGARAGSDRY 246
YG Y SDR GDR GDR YGG DR GYG ER Y +R G G
Sbjct: 132 YGGDRSYGSDR-SFGGDRSYGGDRSYGGGDR----GYGGGERSYGGGDRSYGGGGGGYSN 186
Query: 247 ASGGPARDDGRGYRSRA--APYDRPSRGDRPSFDRY 280
SGG + G GYR YDR R +D Y
Sbjct: 187 RSGGYS--SGGGYRDNRNQGGYDRSGGSYRDGYDSY 220
Score = 66 (28.3 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 191 SKYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGG 250
S+ G R + R G GDR GSDR +G +R Y D + G DR GG
Sbjct: 113 SRGGGRGFFRGSR-GRGGGGYGGDRSYGSDR----SFGGDRSYGGD-RSYGGGDR-GYGG 165
Query: 251 PARDDGRGYRS 261
R G G RS
Sbjct: 166 GERSYGGGDRS 176
Score = 45 (20.9 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 228 GKERGYERDVGARAGSDRYASGGPARDDGRGYRS-RAAPYDRPSRGDR 274
G+ G+ G+R G + G R G GY R+ DR GDR
Sbjct: 104 GRSGGFRG--GSRGGGRGFFRGSRGRGGG-GYGGDRSYGSDRSFGGDR 148
Score = 43 (20.2 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 18/43 (41%), Positives = 19/43 (44%)
Query: 238 GARAGSDRYASGGPARDDGRGYRSRAAP-Y--DRPSRGDRPSF 277
G R+G R S G R RG R R Y DR DR SF
Sbjct: 103 GGRSGGFRGGSRGGGRGFFRGSRGRGGGGYGGDRSYGSDR-SF 144
Score = 35 (17.4 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 188 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDRY 222
++ Y S Y +R DR G G D Y
Sbjct: 186 NRSGGYSSGGGYRDNRNQGGYDRSGGSYRDGYDSY 220
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 231 (86.4 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 42/84 (50%), Positives = 60/84 (71%)
Query: 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
E R FVGGL+W + L+ F +FG +I+ +I+ +R+SGR RGFGF+T+ D +AM DAI
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 66 REMHGREFGDRVISVNKAQPKMGG 89
EM+G+E RVI+VN+AQ + G
Sbjct: 65 EEMNGKELDGRVITVNEAQSRGSG 88
Score = 52 (23.4 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 17/46 (36%), Positives = 19/46 (41%)
Query: 217 GGSDRYPVNGYGKERGYER---DVGARAGSDRYASGGPARDDGRGY 259
GG Y G G GYER G+ G GG R +G GY
Sbjct: 112 GGGGGYSGGGGG---GYERRSGGYGSGGGGGGRGYGGGGRREGGGY 154
Score = 43 (20.2 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 208 GDRLAGDRYGGSDR----YPVNGYGKERGY----ERDVGARAGSD--RYASGG 250
G +G GG +R Y G G RGY R+ G G D Y GG
Sbjct: 114 GGGYSGGGGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGGGG 166
Score = 39 (18.8 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 228 GKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPY 266
G GY G G GG + G GY R+ Y
Sbjct: 96 GSGGGYRS--GGGGGYSGGGGGGYSGGGGGGYERRSGGY 132
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 223 (83.6 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 44/95 (46%), Positives = 64/95 (67%)
Query: 1 MAGKD-ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRR 59
MA D E R FVGGL+W +R LE AF ++G +I+ +I+ +R++GR RGFGF+T+ D +
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 60 AMDDAIREMHGREFGDRVISVNKAQPKMGGEVSDH 94
AM DAI M+G++ R I+VN+AQ + G H
Sbjct: 61 AMKDAIEGMNGQDLDGRSITVNEAQSRGSGGGGGH 95
Score = 58 (25.5 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
Identities = 21/60 (35%), Positives = 22/60 (36%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRG 272
G R GG Y G G GY G Y GG R+ G GY Y SRG
Sbjct: 94 GHRGGGGGGYRSGGGG---GYS------GGGGSYGGGGGRREGGGGYSGGGGGYS--SRG 142
Score = 45 (20.9 bits), Expect = 9.7e-22, Sum P(2) = 9.7e-22
Identities = 18/53 (33%), Positives = 20/53 (37%)
Query: 213 GDRYGGSD--RYPVNGY-GKERGYER---DVGARAGSDRYASGGPARDDGRGY 259
G YGG R GY G GY G+ G R GG +G GY
Sbjct: 115 GGSYGGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGY 167
Score = 36 (17.7 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 208 GDRLAGDRYGGSDRYPVNGYGKERG 232
G R G YGG + GYG G
Sbjct: 151 GRREGGGGYGGGEG---GGYGGSGG 172
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 187 (70.9 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 29/83 (34%), Positives = 57/83 (68%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
+++F+GG+++++ E L AF ++G++++ +++L+R++GR RGFGF+T+ A AI+
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 67 EMHGREFGDRVISVNKAQPKMGG 89
+ GR+ RV+ VN A + G
Sbjct: 100 ALDGRDLHGRVVKVNYANDRTSG 122
Score = 79 (32.9 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 24/68 (35%), Positives = 28/68 (41%)
Query: 199 YVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYA--SGGPARDDG 256
Y +DR +G G YGG GYG GY G GS Y +GG + G
Sbjct: 115 YANDR--TSGGGFGGGGYGGGG----GGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSG 168
Query: 257 RGYRSRAA 264
GY AA
Sbjct: 169 GGYGGNAA 176
Score = 50 (22.7 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 17/54 (31%), Positives = 19/54 (35%)
Query: 219 SDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRG 272
+DR G+G GY G GS Y G GY A Y S G
Sbjct: 117 NDRTSGGGFGGG-GYGGGGGGYGGSGGYGGGAGGYGGSGGYGGGAGGYGGNSGG 169
Score = 47 (21.6 bits), Expect = 9.1e-18, Sum P(2) = 9.1e-18
Identities = 21/78 (26%), Positives = 30/78 (38%)
Query: 191 SKYGSRDRYVSDRYPPAGD-RLAGDRYGGSDRYPVNGY----GKERGYERDVGARAGSDR 245
S YGS + Y S AGD + G G S ++ + G + G E G+ S+
Sbjct: 232 SGYGSANTYGSSNGGFAGDSQFGGSPVGNSSQFGGDNTQFTAGGQFGGEDQFGSMEKSET 291
Query: 246 YASGGPARDDGRGYRSRA 263
GP + RA
Sbjct: 292 KMEDGPIGGEFEDVAKRA 309
Score = 42 (19.8 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGP 251
GD Y GS +GYG Y G AG ++ G P
Sbjct: 226 GD-YNGS-----SGYGSANTYGSSNGGFAGDSQFG-GSP 257
Score = 39 (18.8 bits), Expect = 6.2e-17, Sum P(2) = 6.2e-17
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 190 DSKYGSRDRYVSDRYPPAGDRL---AGDRYGGSDRY 222
DS++G S ++ GD AG ++GG D++
Sbjct: 250 DSQFGGSPVGNSSQF--GGDNTQFTAGGQFGGEDQF 283
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 175 (66.7 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++F+GGLS++ TE+ LE+AF ++G I + R++ R RGFGF+T+ + DA
Sbjct: 3 DEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDA 62
Query: 65 IREMHGREFGDRVISVNKAQPKMGG 89
+ M+G+ R I V++A GG
Sbjct: 63 LEGMNGKSVDGRTIRVDEAGKGGGG 87
Score = 79 (32.9 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 213 GDRYGGSDR-YPVNGYGKERGYERDVGARAGSDRYASGGPA---RDDGRGYRSRAAPY 266
G YGG DR Y YG G G ++G Y+SGG RD G GY R++ Y
Sbjct: 122 GGGYGGGDRSYGDRSYGGGGG-----GYKSGGGGYSSGGGGGYNRDRGSGYGDRSSSY 174
Score = 58 (25.5 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 21/47 (44%), Positives = 23/47 (48%)
Query: 208 GDRLAGDR-YGGSDR-YPVNGYGKERG----YERDVGARAGSDRYAS 248
GDR GDR YGG Y G G G Y RD G+ G DR +S
Sbjct: 128 GDRSYGDRSYGGGGGGYKSGGGGYSSGGGGGYNRDRGSGYG-DRSSS 173
Score = 45 (20.9 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 16/46 (34%), Positives = 16/46 (34%)
Query: 238 GARAGSDRYASGGPARDDG----RGYRSRAAPYDRPSRGDRPSFDR 279
G G Y GG R G RG R R GDR DR
Sbjct: 90 GRSGGGGSYRGGGGGRGGGGGFFRGGRGRGGGGGGYGGGDRSYGDR 135
Score = 45 (20.9 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 19/69 (27%), Positives = 23/69 (33%)
Query: 213 GDRYGGSDRYPVNGYGKERG---YERDVGARAGSDRYASGGPARDD------GRGYRSRA 263
G R GG Y G G+ G + G G Y G + D G GY+S
Sbjct: 89 GGRSGGGGSYRGGGGGRGGGGGFFRGGRGRGGGGGGYGGGDRSYGDRSYGGGGGGYKSGG 148
Query: 264 APYDRPSRG 272
Y G
Sbjct: 149 GGYSSGGGG 157
Score = 41 (19.5 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 13/39 (33%), Positives = 14/39 (35%)
Query: 234 ERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRG 272
E G G R GG R G G R + R RG
Sbjct: 80 EAGKGGGGGGGRSGGGGSYRGGGGG-RGGGGGFFRGGRG 117
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 153 (58.9 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
Score = 121 (47.7 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 44/98 (44%), Positives = 49/98 (50%)
Query: 188 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGSDR--YPVNGYGKERGYERDVGAR 240
+KDS Y SRD Y S R Y PP D D S R YP GYG GY RD R
Sbjct: 213 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYGRD---R 267
Query: 241 AGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 277
SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 268 DYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 301
Score = 70 (29.7 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 195 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 251
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 281 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 336
Query: 252 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 280
D G + R P RG P D Y
Sbjct: 337 ---DRVGRQERGLPPSM-ERGYPPPRDSY 361
Score = 66 (28.3 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 29/80 (36%), Positives = 35/80 (43%)
Query: 188 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 242
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 313 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 367
Query: 243 SDRYASGGPARDDGRGYRSR 262
+ R G +R D G RSR
Sbjct: 368 APRGGGRGGSRSDRGGGRSR 387
Score = 44 (20.5 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 23/72 (31%), Positives = 29/72 (40%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVN-GYGKERGYERDVGARAGSDRYASGGPARDDGRGYRS 261
R P+G + GG R PV+ G G R + D Y S P RDDG +
Sbjct: 161 RSTPSGPVRSSSGMGG--RTPVSRGRDSYGGPPRREPLPSRRDVYLS--P-RDDGYSTKD 215
Query: 262 RAAPYDRPSRGD 273
+ D PS D
Sbjct: 216 SYSSRDYPSSRD 227
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 153 (58.9 bits), Expect = 7.2e-20, Sum P(2) = 7.2e-20
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
Score = 120 (47.3 bits), Expect = 7.2e-20, Sum P(2) = 7.2e-20
Identities = 45/99 (45%), Positives = 50/99 (50%)
Query: 188 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 239
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 215 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 268
Query: 240 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 277
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 269 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 303
Score = 70 (29.7 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 195 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 251
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 283 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 338
Query: 252 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 280
D G + R P RG P D Y
Sbjct: 339 ---DRVGRQERGLPPSM-ERGYPPPRDSY 363
Score = 66 (28.3 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 29/80 (36%), Positives = 35/80 (43%)
Query: 188 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 242
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 315 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 369
Query: 243 SDRYASGGPARDDGRGYRSR 262
+ R G +R D G RSR
Sbjct: 370 APRGGGRGGSRSDRGGGRSR 389
Score = 44 (20.5 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 23/72 (31%), Positives = 29/72 (40%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVN-GYGKERGYERDVGARAGSDRYASGGPARDDGRGYRS 261
R P+G + GG R PV+ G G R + D Y S P RDDG +
Sbjct: 163 RSAPSGPVRSSSGMGG--RAPVSRGRDSYGGPPRREPLPSRRDVYLS--P-RDDGYSTKD 217
Query: 262 RAAPYDRPSRGD 273
+ D PS D
Sbjct: 218 SYSSRDYPSSRD 229
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 153 (58.9 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
Score = 120 (47.3 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 45/99 (45%), Positives = 50/99 (50%)
Query: 188 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 239
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 216 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 269
Query: 240 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 277
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 270 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 304
Score = 70 (29.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 30/80 (37%), Positives = 35/80 (43%)
Query: 188 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 242
S+D GSRD Y S R DR G DR P + ERGY RD + G
Sbjct: 316 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQDRGLPPS---MERGYPPPRDSYSSSSRG 370
Query: 243 SDRYASGGPARDDGRGYRSR 262
+ R G +R D G RSR
Sbjct: 371 APRGGGRGGSRSDRGGGRSR 390
Score = 70 (29.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 195 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 251
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 284 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 339
Query: 252 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 280
D G + R P RG P D Y
Sbjct: 340 ---DRVGRQDRGLPPSM-ERGYPPPRDSY 364
Score = 44 (20.5 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 23/72 (31%), Positives = 29/72 (40%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVN-GYGKERGYERDVGARAGSDRYASGGPARDDGRGYRS 261
R P+G + GG R PV+ G G R + D Y S P RDDG +
Sbjct: 164 RSAPSGPVRSSSGMGG--RAPVSRGRDSYGGPPRREPLPSRRDVYLS--P-RDDGYSTKD 218
Query: 262 RAAPYDRPSRGD 273
+ D PS D
Sbjct: 219 SYSSRDYPSSRD 230
Score = 40 (19.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 223 PVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
P G RG G G+ S G DDG GY
Sbjct: 99 PPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDG-GY 134
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 153 (58.9 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
Score = 120 (47.3 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 45/99 (45%), Positives = 50/99 (50%)
Query: 188 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 239
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 216 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 269
Query: 240 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 277
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 270 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 304
Score = 70 (29.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 195 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 251
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 284 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 339
Query: 252 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 280
D G + R P RG P D Y
Sbjct: 340 ---DRVGRQERGLPPSM-ERGYPPPRDSY 364
Score = 66 (28.3 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 29/80 (36%), Positives = 35/80 (43%)
Query: 188 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 242
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 316 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 370
Query: 243 SDRYASGGPARDDGRGYRSR 262
+ R G +R D G RSR
Sbjct: 371 APRGGGRGGSRSDRGGGRSR 390
Score = 44 (20.5 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 23/72 (31%), Positives = 29/72 (40%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVN-GYGKERGYERDVGARAGSDRYASGGPARDDGRGYRS 261
R P+G + GG R PV+ G G R + D Y S P RDDG +
Sbjct: 164 RSAPSGPVRSSSGMGG--RAPVSRGRDSYGGPPRREPLPSRRDVYLS--P-RDDGYSTKD 218
Query: 262 RAAPYDRPSRGD 273
+ D PS D
Sbjct: 219 SYSSRDYPSSRD 230
Score = 40 (19.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 223 PVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
P G RG G G+ S G DDG GY
Sbjct: 99 PPRSRGPPRGLRGGRGGSGGTRGPPSHGGHMDDG-GY 134
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 153 (58.9 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
Score = 120 (47.3 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 45/99 (45%), Positives = 50/99 (50%)
Query: 188 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 239
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 216 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 269
Query: 240 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 277
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 270 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 304
Score = 70 (29.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 195 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 251
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 284 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 339
Query: 252 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 280
D G + R P RG P D Y
Sbjct: 340 ---DRVGRQERGLPPSM-ERGYPPPRDSY 364
Score = 66 (28.3 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 29/80 (36%), Positives = 35/80 (43%)
Query: 188 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 242
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 316 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 370
Query: 243 SDRYASGGPARDDGRGYRSR 262
+ R G +R D G RSR
Sbjct: 371 APRGGGRGGSRSDRGGGRSR 390
Score = 44 (20.5 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 23/72 (31%), Positives = 29/72 (40%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVN-GYGKERGYERDVGARAGSDRYASGGPARDDGRGYRS 261
R P+G + GG R PV+ G G R + D Y S P RDDG +
Sbjct: 164 RSAPSGPVRSSSGMGG--RAPVSRGRDSYGGPPRREPLPSRRDVYLS--P-RDDGYSTKD 218
Query: 262 RAAPYDRPSRGD 273
+ D PS D
Sbjct: 219 SYSSRDYPSSRD 230
Score = 40 (19.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 223 PVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
P G RG G G+ S G DDG GY
Sbjct: 99 PPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDG-GY 134
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 153 (58.9 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
Score = 120 (47.3 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 45/99 (45%), Positives = 50/99 (50%)
Query: 188 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 239
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 216 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 269
Query: 240 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 277
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 270 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 304
Score = 70 (29.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 195 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 251
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 284 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 339
Query: 252 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 280
D G + R P RG P D Y
Sbjct: 340 ---DRVGRQERGLPPSM-ERGYPPPRDSY 364
Score = 66 (28.3 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 29/80 (36%), Positives = 35/80 (43%)
Query: 188 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 242
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 316 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 370
Query: 243 SDRYASGGPARDDGRGYRSR 262
+ R G +R D G RSR
Sbjct: 371 APRGGGRGGSRSDRGGGRSR 390
Score = 44 (20.5 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 23/72 (31%), Positives = 29/72 (40%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVN-GYGKERGYERDVGARAGSDRYASGGPARDDGRGYRS 261
R P+G + GG R PV+ G G R + D Y S P RDDG +
Sbjct: 164 RSAPSGPVRSSSGMGG--RAPVSRGRDSYGGPPRREPLPSRRDVYLS--P-RDDGYSTKD 218
Query: 262 RAAPYDRPSRGD 273
+ D PS D
Sbjct: 219 SYSSRDYPSSRD 230
Score = 40 (19.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 223 PVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
P G RG G G+ S G DDG GY
Sbjct: 99 PPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDG-GY 134
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 205 (77.2 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 37/81 (45%), Positives = 57/81 (70%)
Query: 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
E R FVGGL W ++ L+NAF ++G +I+ +I+ +R++GR RGFGF+T+A AM AI
Sbjct: 5 EYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAI 64
Query: 66 REMHGREFGDRVISVNKAQPK 86
M+G++ R I+VN+AQ +
Sbjct: 65 EAMNGQDLDGRNITVNEAQSR 85
Score = 45 (20.9 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 17/50 (34%), Positives = 19/50 (38%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSR 262
G +GG GYG +R G G Y GG G GY SR
Sbjct: 90 GGGFGGGG----GGYGGQRREGGGGGYGGGGGGY--GGGRSGGGGGYGSR 133
Score = 43 (20.2 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 17/47 (36%), Positives = 17/47 (36%)
Query: 204 YPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGG 250
Y G G R GG Y G GY G GS R SGG
Sbjct: 112 YGGGGGGYGGGRSGGGGGYGSRD-GGGGGYGGGGGGYGGS-RGGSGG 156
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 153 (58.9 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 10 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 69
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 70 MNGKSLDGKAIKVEQA 85
Score = 120 (47.3 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 45/99 (45%), Positives = 50/99 (50%)
Query: 188 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 239
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 217 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 270
Query: 240 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 277
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 271 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 305
Score = 70 (29.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 195 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 251
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 285 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 340
Query: 252 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 280
D G + R P RG P D Y
Sbjct: 341 ---DRVGRQERGLPPSM-ERGYPPPRDSY 365
Score = 66 (28.3 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 29/80 (36%), Positives = 35/80 (43%)
Query: 188 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 242
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 317 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 371
Query: 243 SDRYASGGPARDDGRGYRSR 262
+ R G +R D G RSR
Sbjct: 372 APRGGGRGGSRSDRGGGRSR 391
Score = 44 (20.5 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 23/72 (31%), Positives = 29/72 (40%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVN-GYGKERGYERDVGARAGSDRYASGGPARDDGRGYRS 261
R P+G + GG R PV+ G G R + D Y S P RDDG +
Sbjct: 165 RSAPSGPVRSSSGMGG--RAPVSRGRDSYGGPPRREPLPSRRDVYLS--P-RDDGYSTKD 219
Query: 262 RAAPYDRPSRGD 273
+ D PS D
Sbjct: 220 SYSSRDYPSSRD 231
Score = 40 (19.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 223 PVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
P G RG G G+ S G DDG GY
Sbjct: 100 PPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDG-GY 135
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 151 (58.2 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E ++ +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
Score = 124 (48.7 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 47/105 (44%), Positives = 51/105 (48%)
Query: 188 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 239
+KDS Y SRD Y S R Y PP D D YG S D YP GYG GY RD
Sbjct: 216 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYGDRDGYGRD--- 269
Query: 240 RAGSDRYASGGPARDDGRGY-RSRAAPYDR---PSRGDRPSFDRY 280
R SD + SGG RD Y SR+AP R PS G +D Y
Sbjct: 270 RDYSD-HPSGGSYRDSYESYGNSRSAPLTRGPPPSYGGSSRYDDY 313
Score = 71 (30.1 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 31/81 (38%), Positives = 38/81 (46%)
Query: 188 SKDSKYGSRDRYVSDRYPPAGDRLAG-DRYGGSDR-YPVNGYGKERGY--ERDV--GARA 241
S+D GSRD Y S R D + DR G +R P + ERGY RD +
Sbjct: 316 SRDGYGGSRDSYSSSR----SDLYSSCDRVGRQERGLPPS---VERGYPSSRDSYSSSSR 368
Query: 242 GSDRYASGGPARDDGRGYRSR 262
G+ R A G +R D G RSR
Sbjct: 369 GAPRGAGPGGSRSDRGGGRSR 389
Score = 63 (27.2 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 31/89 (34%), Positives = 37/89 (41%)
Query: 195 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYAS--- 248
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+S
Sbjct: 284 SYESYGNSRSAPL-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSCDR 340
Query: 249 -GGPAR----DDGRGYRSRAAPYDRPSRG 272
G R RGY S Y SRG
Sbjct: 341 VGRQERGLPPSVERGYPSSRDSYSSSSRG 369
Score = 43 (20.2 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 229 KERGYERDVGARAGSDRYASGGPAR----DDGRGY 259
+ RG R GA G G P+R DDG GY
Sbjct: 101 RSRGPPRGFGAGRGGSGGTRGPPSRGGHMDDG-GY 134
Score = 38 (18.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 22/72 (30%), Positives = 29/72 (40%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVN-GYGKERGYERDVGARAGSDRYASGGPARDDGRGYRS 261
R P+G + GG R P++ G G R + D Y S P RDDG +
Sbjct: 164 RSAPSGLVRSSSGMGG--RAPLSRGRDSYGGPPRREPLPSRRDVYLS--P-RDDGYSTKD 218
Query: 262 RAAPYDRPSRGD 273
+ D PS D
Sbjct: 219 SYSSRDYPSSRD 230
Score = 38 (18.4 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 42 RDSGRPRGFG 51
R G PRGFG
Sbjct: 101 RSRGPPRGFG 110
Score = 37 (18.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 10/25 (40%), Positives = 10/25 (40%)
Query: 248 SGGPARDDGRGYRSRAAPYDRPSRG 272
S GP R G G PSRG
Sbjct: 102 SRGPPRGFGAGRGGSGGTRGPPSRG 126
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 153 (58.9 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
Score = 116 (45.9 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 44/99 (44%), Positives = 50/99 (50%)
Query: 188 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 239
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY R+
Sbjct: 216 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRE--- 269
Query: 240 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 277
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 270 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 304
Score = 69 (29.3 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 31/89 (34%), Positives = 37/89 (41%)
Query: 195 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 251
S + Y + R P R YGGS RY + Y R GY RD + SD Y+SG
Sbjct: 284 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYTSSRSDLYSSGR- 339
Query: 252 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 280
D G + R P RG P D Y
Sbjct: 340 ---DRVGRQERGLPPSM-ERGYPPPRDSY 364
Score = 68 (29.0 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 30/80 (37%), Positives = 36/80 (45%)
Query: 188 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 242
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 316 SRDGYGGSRDSYTSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 370
Query: 243 SDRYASGGPARDDGRGYRSR 262
+ R G +R D RG RSR
Sbjct: 371 APRGGGRGGSRSD-RGGRSR 389
Score = 45 (20.9 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 25/75 (33%), Positives = 31/75 (41%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVN----GYGKERGYERDVGARAGSDRYASGGPARDDGRG 258
R P+G + GG R PV+ GYG G R + D Y S P RDDG
Sbjct: 164 RSAPSGPVRSSSGMGG--RAPVSRGRDGYG---GPPRREPLPSRRDVYLS--P-RDDGYS 215
Query: 259 YRSRAAPYDRPSRGD 273
+ + D PS D
Sbjct: 216 TKDSYSSRDYPSSRD 230
Score = 40 (19.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 223 PVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
P G RG G G+ S G DDG GY
Sbjct: 99 PPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDG-GY 134
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 153 (58.9 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
Score = 116 (45.9 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 44/99 (44%), Positives = 50/99 (50%)
Query: 188 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 239
+KDS Y SR+ Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 216 TKDS-YSSRE-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 269
Query: 240 RAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 277
R SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 270 RDYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 304
Score = 70 (29.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 195 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 251
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 284 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 339
Query: 252 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 280
D G + R P RG P D Y
Sbjct: 340 ---DRVGRQERGLPPSM-ERGYPPPRDSY 364
Score = 66 (28.3 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 29/80 (36%), Positives = 35/80 (43%)
Query: 188 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 242
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 316 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 370
Query: 243 SDRYASGGPARDDGRGYRSR 262
+ R G +R D G RSR
Sbjct: 371 APRGGGRGGSRSDRGGGRSR 390
Score = 40 (19.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 223 PVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
P G RG G G+ S G DDG GY
Sbjct: 99 PPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDG-GY 134
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 167 (63.8 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+E ++FVGGL++N E+ LE+ F FG I E ++ +R++ R RGFGFIT+ + DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+R M+G R I V+ A
Sbjct: 64 MRAMNGESLDGRQIRVDHA 82
Score = 78 (32.5 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 210 RLAGDRYGGSDRYPVN--GYGKERGYERDV-GARAGSDRYASGGPARDD 255
R GD+ GS RY GYG G RD G++ G DRY SGG RD+
Sbjct: 103 RGGGDQGYGSGRYDSRPGGYGYGYGRSRDYSGSQGGYDRY-SGGNYRDN 150
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 165 (63.1 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
Score = 80 (33.2 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 26/73 (35%), Positives = 32/73 (43%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPYDR 268
G GG + G G+ RG+ R G R G R+ S R Y RS+ YDR
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGYDR 153
Query: 269 PSRGD-RPSFDRY 280
S G R S+D Y
Sbjct: 154 SSGGSYRDSYDSY 166
Score = 70 (29.7 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 26/59 (44%), Positives = 30/59 (50%)
Query: 210 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAGSDRYASGGPARD--DGRG-YRSR 262
R GDR YGGS R+ GYG R Y G DR +SGG RD D G +RS+
Sbjct: 116 RGGGDRGYGGS-RFESRSGGYGGSRDYYSSRSQGGGYDR-SSGGSYRDSYDSYGKWRSK 172
Score = 61 (26.5 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 24/62 (38%), Positives = 28/62 (45%)
Query: 217 GGSDRYPVNGYGKERGYERDVGARAGS-DRYAS----GGPARDDGRGYRSRAAPYDR-PS 270
GG DR GYG R +E G GS D Y+S GG R G YR Y + S
Sbjct: 117 GGGDR----GYGGSR-FESRSGGYGGSRDYYSSRSQGGGYDRSSGGSYRDSYDSYGKWRS 171
Query: 271 RG 272
+G
Sbjct: 172 KG 173
Score = 52 (23.4 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 188 SKDSKYG-SRDRYVSDRYPPAG-DRLAGDRYGGSDRYPVNGYGKER 231
S+ YG SRD Y S R G DR +G Y D Y + YGK R
Sbjct: 130 SRSGGYGGSRD-YYSSRSQGGGYDRSSGGSY--RDSY--DSYGKWR 170
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 157 (60.3 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 32/84 (38%), Positives = 51/84 (60%)
Query: 1 MAGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRR 59
MA D ++F+GGL+ +E+ LE F +FG+I E +M +R++ + RGF F+TY +
Sbjct: 1 MAEADRPGKLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPG 60
Query: 60 AMDDAIREMHGREFGDRVISVNKA 83
DA REM+G+ + I V +A
Sbjct: 61 DAKDAAREMNGKPLDGKPIKVEQA 84
Score = 101 (40.6 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 41/103 (39%), Positives = 46/103 (44%)
Query: 188 SKDSKYGSRDRYVSDRYPPAGDRLA-G--DR-YGGSDRYPVNGYGKER------GYERDV 237
S+D YGS R SDR G R G DR GS R P +GYG R G
Sbjct: 234 SRDD-YGSGSRGYSDRDGYGGGREPRGYIDRPSAGSYRDPYDGYGNSRSAPPSRGPPPSY 292
Query: 238 GARAGSDRYASGGPARDDGRGYR-----SRAAPYDRPSRGDRP 275
GS RY G + DG G R SR+ PY +RGDRP
Sbjct: 293 SGSGGSSRYDDYGSSSRDGYGSRDSYPSSRSDPYST-NRGDRP 334
Score = 92 (37.4 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 36/96 (37%), Positives = 43/96 (44%)
Query: 189 KDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYERDVGA--RAGSDR 245
+D YGS+D Y S Y + D + D YG R YP Y D G+ R SDR
Sbjct: 192 RDDHYGSKDSYSSRDYMSSRD--SRD-YGPPPRDYPYREYSGHSSSRDDYGSGSRGYSDR 248
Query: 246 YASGGPARDDGRGYRSRAAPYDRPSRGD-RPSFDRY 280
GG R+ RGY DRPS G R +D Y
Sbjct: 249 DGYGG-GREP-RGY------IDRPSAGSYRDPYDGY 276
Score = 91 (37.1 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 43/105 (40%), Positives = 47/105 (44%)
Query: 188 SKDSKYGSRDRYVSDR----Y-PPAGD----RLAG-----DRYGGSDRYPVNGYGKERGY 233
SKDS Y SRD Y+S R Y PP D +G D YG R GY GY
Sbjct: 198 SKDS-YSSRD-YMSSRDSRDYGPPPRDYPYREYSGHSSSRDDYGSGSR----GYSDRDGY 251
Query: 234 ERDVGARAGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 277
R DR S G RD GY SR+AP PSRG PS+
Sbjct: 252 GGGREPRGYIDR-PSAGSYRDPYDGYGNSRSAP---PSRGPPPSY 292
Score = 88 (36.0 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 31/77 (40%), Positives = 38/77 (49%)
Query: 188 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRY 246
S+D YGSRD Y S R P GDR G +R P ERGY R+ + + G+ R
Sbjct: 308 SRDG-YGSRDSYPSSRSDPYSTN-RGDRPGRQERGPPP---LERGYPREYSSSSRGAPRG 362
Query: 247 ASGGPARDD-GRGYRSR 262
G R D G G R+R
Sbjct: 363 GGRGGRRPDRGMG-RNR 378
Score = 41 (19.5 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 28/87 (32%), Positives = 32/87 (36%)
Query: 200 VSDRYPPAGDRLAGDRYGGSD--RYPVNGYGKERGYERD-VGARAGSDRYAS----GGPA 252
+S R PP R +R GG R +G +RD G D S G P
Sbjct: 132 MSSRGPPPMKRGPPERNGGPPPKRSAPSGPMGRPSRDRDPYGPPPRRDSLMSRRDDGPPH 191
Query: 253 RDDGRG----YRSRAAPYDRPSRGDRP 275
RDD G Y SR R SR P
Sbjct: 192 RDDHYGSKDSYSSRDYMSSRDSRDYGP 218
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 166 (63.5 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+E ++FVGGL++N ER LE+ F FG I E ++ +R++ R RGFGFIT+ + +A
Sbjct: 4 EEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+R M+G R I V+ A
Sbjct: 64 MRAMNGESLDGRQIRVDHA 82
Score = 78 (32.5 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 30/77 (38%), Positives = 37/77 (48%)
Query: 188 SKDSKYGSRDRYVSDR-YPPAGDRLAGDRYGGSDRYPVN------GYGKERGYERDVGAR 240
++ S+ G+ Y R YP G GD+ GS RY GYG G RD G R
Sbjct: 86 ARGSRGGAFGGYERGRGYPRGG----GDQGYGSGRYDNRPGAYGFGYGYGYGRSRDYGGR 141
Query: 241 A--GSDRYASGGPARDD 255
+ G DRY SGG RD+
Sbjct: 142 SQGGYDRY-SGGNYRDN 157
Score = 74 (31.1 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 29/80 (36%), Positives = 36/80 (45%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGYR- 260
R AG G R GG+ GY + RGY R G + GS RY + A G GY
Sbjct: 78 RVDHAGKSARGSR-GGA----FGGYERGRGYPRGGGDQGYGSGRYDNRPGAYGFGYGYGY 132
Query: 261 SRAAPYDRPSRGDRPSFDRY 280
R+ Y S+G +DRY
Sbjct: 133 GRSRDYGGRSQG---GYDRY 149
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 167 (63.8 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+E ++FVGGL++N E+ LE+ F FG I E ++ +R++ R RGFGFIT+ + DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+R M+G R I V+ A
Sbjct: 64 MRAMNGESLDGRQIRVDHA 82
Score = 74 (31.1 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
Identities = 23/50 (46%), Positives = 26/50 (52%)
Query: 210 RLAGDRYGGSDRYPVN--GYGKERGYERDVGARA--GSDRYASGGPARDD 255
R GD+ GS RY GYG G RD R+ G DRY SGG RD+
Sbjct: 105 RGGGDQGYGSGRYDSRPGGYGYGYGRSRDYSGRSQGGYDRY-SGGNYRDN 153
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 163 (62.4 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+E ++FVGGL++N E+ LE+ F FG I E ++ +R++ R RGFGFIT+ + D
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDV 63
Query: 65 IREMHGREFGDRVISVNKA 83
+R M+G R I V+ A
Sbjct: 64 MRAMNGESLDGRQIRVDHA 82
Score = 78 (32.5 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 210 RLAGDRYGGSDRYPVN--GYGKERGYERDV-GARAGSDRYASGGPARDD 255
R GD+ GS RY GYG G RD G++ G DRY SGG RD+
Sbjct: 105 RGGGDQGYGSGRYDSRPGGYGYGYGRSRDYSGSQGGYDRY-SGGNYRDN 152
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 153 (58.9 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
Score = 110 (43.8 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
Identities = 43/103 (41%), Positives = 49/103 (47%)
Query: 188 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 239
+KD Y SRD Y S R Y PP D D YG S D YP GY +RD G
Sbjct: 204 TKDG-YSSRD-YPSSRDTRDYAPPPRDYAYRD-YGHSSSRDEYPSRGYSLSSYSDRD-GY 259
Query: 240 RAGSDR----YASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 277
G DR + SGG RD Y SR+AP P+RG PS+
Sbjct: 260 GGGRDRDYSDHPSGGSYRDSYESYGNSRSAP---PARGPPPSY 299
Score = 75 (31.5 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 33/89 (37%), Positives = 41/89 (46%)
Query: 195 SRDRYVSDRY-PPAGDRLAGDRYGGSDRYPVNGYGKER-GY-ERDVGARAGSDRYASGGP 251
S + Y + R PPA R YGGS RY + YG R GY R+ + + SD Y+SG
Sbjct: 279 SYESYGNSRSAPPA--RGPPPSYGGSSRY--DDYGSTRDGYGSRESYSSSRSDVYSSGR- 333
Query: 252 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 280
D G + R P RG P D Y
Sbjct: 334 ---DRVGRQDRGLPPSM-ERGYPPPRDSY 358
Score = 67 (28.6 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 28/75 (37%), Positives = 33/75 (44%)
Query: 193 YGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAGSDRYA 247
YGSR+ Y S R DR G DR P + ERGY RD + G+ R
Sbjct: 315 YGSRESYSSSRSDVYSS--GRDRVGRQDRGLPPS---MERGYPPPRDSYSSSSRGAPRGG 369
Query: 248 SGGPARDDGRGYRSR 262
G +R D G RSR
Sbjct: 370 GRGGSRSDRGGGRSR 384
Score = 46 (21.3 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 27/78 (34%), Positives = 32/78 (41%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVN-GYGKERGYERDVGARAGSDRYASGGPARDDGR---- 257
R P+G + GG R PV+ G G R + D Y S P RDDG
Sbjct: 153 RSAPSGP-VRSSSMGG--RAPVSRGRDSYGGPPRREPMPSRRDVYMS--P-RDDGYSTKD 206
Query: 258 GYRSRAAPYDRPSRGDRP 275
GY SR P R +R P
Sbjct: 207 GYSSRDYPSSRDTRDYAP 224
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 170 (64.9 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 34/79 (43%), Positives = 50/79 (63%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+E ++FVGGL++N E+ LE+ F FG I E ++ +R++ R RGFGFIT+ D DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+R M+G R I V+ A
Sbjct: 64 MRAMNGESLDGRQIRVDHA 82
Score = 70 (29.7 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 25/56 (44%), Positives = 28/56 (50%)
Query: 210 RLAGDRYGGSDRYPVN--GYGKERGY------ERDVGARA--GSDRYASGGPARDD 255
R GD+ GS RY GYG GY RD G R+ G DRY SGG RD+
Sbjct: 105 RGGGDQGYGSGRYDSRPGGYGYGYGYGYGYGRSRDYGGRSQGGYDRY-SGGNYRDN 159
Score = 68 (29.0 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 29/82 (35%), Positives = 36/82 (43%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYAS--GGPARDDGRGY 259
R AG G R GG+ +G+ R Y R G + GS RY S GG G GY
Sbjct: 78 RVDHAGKSARGTR-GGA----FGAHGRGRSYSRGGGDQGYGSGRYDSRPGGYGYGYGYGY 132
Query: 260 R-SRAAPYDRPSRGDRPSFDRY 280
R+ Y S+G +DRY
Sbjct: 133 GYGRSRDYGGRSQG---GYDRY 151
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 149 (57.5 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 25/76 (32%), Positives = 46/76 (60%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ D R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
Score = 122 (48.0 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 44/98 (44%), Positives = 49/98 (50%)
Query: 188 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGSDR--YPVNGYGKERGYERDVGAR 240
+KDS Y SRD Y S R Y PP D D S R YP GYG GY RD R
Sbjct: 213 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYGRD---R 267
Query: 241 AGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 277
SD + SGG RD Y SR+AP P+RG PS+
Sbjct: 268 EYSD-HPSGGSYRDSYESYGNSRSAP---PTRGPPPSY 301
Score = 70 (29.7 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 31/89 (34%), Positives = 38/89 (42%)
Query: 195 SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGP 251
S + Y + R P R YGGS RY + Y R GY RD + + SD Y+SG
Sbjct: 281 SYESYGNSRSAPP-TRGPPPSYGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSGR- 336
Query: 252 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 280
D G + R P RG P D Y
Sbjct: 337 ---DRVGRQERGLPPSM-ERGYPPPRDSY 361
Score = 66 (28.3 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 29/80 (36%), Positives = 35/80 (43%)
Query: 188 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAG 242
S+D GSRD Y S R DR G +R P + ERGY RD + G
Sbjct: 313 SRDGYGGSRDSYSSSRSDLYSS--GRDRVGRQERGLPPS---MERGYPPPRDSYSSSSRG 367
Query: 243 SDRYASGGPARDDGRGYRSR 262
+ R G +R D G RSR
Sbjct: 368 APRGGGRGGSRSDRGGGRSR 387
Score = 44 (20.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 23/72 (31%), Positives = 29/72 (40%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVN-GYGKERGYERDVGARAGSDRYASGGPARDDGRGYRS 261
R P+G + GG R PV+ G G R + D Y S P RDDG +
Sbjct: 161 RSTPSGPVRSSSGMGG--RTPVSRGRDSYGGPPRREPLPSRRDVYLS--P-RDDGYSTKD 215
Query: 262 RAAPYDRPSRGD 273
+ D PS D
Sbjct: 216 SYSSRDYPSSRD 227
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 165 (63.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
Score = 73 (30.8 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 26/74 (35%), Positives = 34/74 (45%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 267
G GG + G G+ RG+ R G R G +R+ S R Y RS++ Y D
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSD 153
Query: 268 RPSRGD-RPSFDRY 280
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 67 (28.6 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
Identities = 27/68 (39%), Positives = 31/68 (45%)
Query: 210 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAG-SDRYASGGPARDDGRGYRS--RA 263
R GDR YGG+ R+ GYG R Y G SDR +SGG RD Y + RA
Sbjct: 116 RGGGDRGYGGN-RFESRSGGYGGSRDYYSSRSQSGGYSDR-SSGGSYRDSYDSYEAGQRA 173
Query: 264 APYDRPSR 271
P R
Sbjct: 174 EARGIPGR 181
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 165 (63.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
Score = 73 (30.8 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 26/74 (35%), Positives = 34/74 (45%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 267
G GG + G G+ RG+ R G R G +R+ S R Y RS++ Y D
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSD 153
Query: 268 RPSRGD-RPSFDRY 280
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 64 (27.6 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 23/54 (42%), Positives = 26/54 (48%)
Query: 210 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAG-SDRYASGGPARDDGRGY 259
R GDR YGG+ R+ GYG R Y G SDR +SGG RD Y
Sbjct: 116 RGGGDRGYGGN-RFESRSGGYGGSRDYYSSRSQSGGYSDR-SSGGSYRDSYDSY 167
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 165 (63.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
Score = 73 (30.8 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 26/74 (35%), Positives = 34/74 (45%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 267
G GG + G G+ RG+ R G R G +R+ S R Y RS++ Y D
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSD 153
Query: 268 RPSRGD-RPSFDRY 280
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 64 (27.6 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 23/54 (42%), Positives = 26/54 (48%)
Query: 210 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAG-SDRYASGGPARDDGRGY 259
R GDR YGG+ R+ GYG R Y G SDR +SGG RD Y
Sbjct: 116 RGGGDRGYGGN-RFESRSGGYGGSRDYYSSRSQSGGYSDR-SSGGSYRDSYDSY 167
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 165 (63.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
Score = 73 (30.8 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 26/74 (35%), Positives = 34/74 (45%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 267
G GG + G G+ RG+ R G R G +R+ S R Y RS++ Y D
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSD 153
Query: 268 RPSRGD-RPSFDRY 280
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 64 (27.6 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 23/54 (42%), Positives = 26/54 (48%)
Query: 210 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAG-SDRYASGGPARDDGRGY 259
R GDR YGG+ R+ GYG R Y G SDR +SGG RD Y
Sbjct: 116 RGGGDRGYGGN-RFESRSGGYGGSRDYYSSRSQSGGYSDR-SSGGSYRDSYDSY 167
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 171 (65.3 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 31/79 (39%), Positives = 51/79 (64%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGL++ TE LE F ++G++ E ++ +R+S R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
Score = 66 (28.3 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 20/52 (38%), Positives = 25/52 (48%)
Query: 213 GDR-YGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGYRSR 262
GDR YGGS R+ G + RD R+ GS SGG RD Y ++
Sbjct: 114 GDRGYGGSSRFENRSGGYQSSGSRDYYGRSHGSYGDRSGGSYRDSYDSYTTQ 165
Score = 55 (24.4 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
Identities = 27/78 (34%), Positives = 34/78 (43%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGR--GYR 260
R AG + + DR GG Y G RG+ R R G GG +R + R GY+
Sbjct: 78 RVDQAG-KSSNDRRGG---YR-GGSSGGRGFFRGGRGRGGGGDRGYGGSSRFENRSGGYQ 132
Query: 261 SRAAP--YDRP--SRGDR 274
S + Y R S GDR
Sbjct: 133 SSGSRDYYGRSHGSYGDR 150
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 165 (63.1 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
Score = 72 (30.4 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 26/74 (35%), Positives = 32/74 (43%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 267
G GG + G G+ RG+ R G R G R+ S R Y RS+ Y D
Sbjct: 95 GGSSGGRGFFR-GGRGRGRGFSRGGGDRGYGGSRFESRSGGYGGSRDYYSSRSQGGSYGD 153
Query: 268 RPSRGD-RPSFDRY 280
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 66 (28.3 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 25/55 (45%), Positives = 27/55 (49%)
Query: 210 RLAGDR-YGGSDRYPVN--GYGKERGY--ERDVGARAGSDRYASGGPARDDGRGY 259
R GDR YGGS R+ GYG R Y R G G DR +SGG RD Y
Sbjct: 116 RGGGDRGYGGS-RFESRSGGYGGSRDYYSSRSQGGSYG-DR-SSGGSYRDSYDSY 167
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 162 (62.1 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+E ++FVGGL++N E+ LE+ F FG I E ++ +R++ R RGFGFIT+ + +A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+R M+G R I V+ A
Sbjct: 64 MRAMNGESLDGRQIRVDHA 82
Score = 75 (31.5 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 25/52 (48%), Positives = 30/52 (57%)
Query: 210 RLAGDRYGGSDRYPVN--GYGKERGY--ERDVGARA-GS-DRYASGGPARDD 255
R GD+ G+ RY GYG GY RD G+R+ GS DRY SGG RD+
Sbjct: 103 RGGGDQGYGNGRYDSRPGGYGYGYGYGRSRDYGSRSQGSYDRY-SGGNYRDN 153
Score = 35 (17.4 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 188 SKDSKYGSRDRYVSDRY 204
S+D YGSR + DRY
Sbjct: 131 SRD--YGSRSQGSYDRY 145
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 165 (63.1 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
Score = 71 (30.1 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 26/74 (35%), Positives = 32/74 (43%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 267
G GG + G G+ RG+ R G R G R+ S R Y RS+ Y D
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGYGD 153
Query: 268 RPSRGD-RPSFDRY 280
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 68 (29.0 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 27/60 (45%), Positives = 31/60 (51%)
Query: 210 RLAGDR-YGGSDRYPVN--GYGKERGY--ERDVGARAGSDRYASGGPARDDGRGY-RSRA 263
R GDR YGGS R+ GYG R Y R G G DR +SGG RD Y +SR+
Sbjct: 116 RGGGDRGYGGS-RFESRSGGYGGSRDYYSSRSQGGGYG-DR-SSGGSYRDSYDSYGKSRS 172
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 165 (63.1 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
Score = 71 (30.1 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 26/74 (35%), Positives = 32/74 (43%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 267
G GG + G G+ RG+ R G R G R+ S R Y RS+ Y D
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGYGD 153
Query: 268 RPSRGD-RPSFDRY 280
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 65 (27.9 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 25/55 (45%), Positives = 27/55 (49%)
Query: 210 RLAGDR-YGGSDRYPVN--GYGKERGY--ERDVGARAGSDRYASGGPARDDGRGY 259
R GDR YGGS R+ GYG R Y R G G DR +SGG RD Y
Sbjct: 116 RGGGDRGYGGS-RFESRSGGYGGSRDYYSSRSQGGGYG-DR-SSGGSYRDSYDSY 167
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 149 (57.5 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 25/76 (32%), Positives = 46/76 (60%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ D R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
Score = 117 (46.2 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 43/98 (43%), Positives = 49/98 (50%)
Query: 188 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGSDR--YPVNGYGKERGYERDVGAR 240
+KDS Y SRD Y+S R Y PP D D S R YP GYG GY RD R
Sbjct: 213 TKDS-YSSRD-YLSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRGYGDRDGYGRD---R 267
Query: 241 AGSDRYASGGPARDDGRGY-RSRAAPYDRPSRGDRPSF 277
SD + SGG RD Y S +AP P+RG PS+
Sbjct: 268 EYSD-HPSGGSYRDSYESYGNSCSAP---PTRGPPPSY 301
Score = 61 (26.5 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 29/77 (37%), Positives = 36/77 (46%)
Query: 188 SKDSKYGSRDRYVSDRYPP-AGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARA 241
S+D GSRD Y S R + DR DR G +R P + ERGY RD +
Sbjct: 313 SRDGYGGSRDSYSSSRSDLYSSDR---DRVGRQERGLPPS---MERGYPPPRDFYSSSSR 366
Query: 242 GSDRYASGGPARDDGRG 258
G+ R G +R D RG
Sbjct: 367 GAPRGGGRGGSRSD-RG 382
Score = 59 (25.8 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 25/68 (36%), Positives = 30/68 (44%)
Query: 216 YGGSDRYPVNGYGKER-GY--ERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRG 272
YGGS RY + Y R GY RD + + SD Y+S D G + R P RG
Sbjct: 301 YGGSSRY--DDYSSSRDGYGGSRDSYSSSRSDLYSSDR----DRVGRQERGLPPSM-ERG 353
Query: 273 DRPSFDRY 280
P D Y
Sbjct: 354 YPPPRDFY 361
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 165 (63.1 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
Score = 73 (30.8 bits), Expect = 6.1e-18, Sum P(2) = 6.1e-18
Identities = 26/74 (35%), Positives = 34/74 (45%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 267
G GG + G G+ RG+ R G R G +R+ S R Y RS++ Y D
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSD 153
Query: 268 RPSRGD-RPSFDRY 280
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 64 (27.6 bits), Expect = 5.3e-17, Sum P(2) = 5.3e-17
Identities = 23/54 (42%), Positives = 26/54 (48%)
Query: 210 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAG-SDRYASGGPARDDGRGY 259
R GDR YGG+ R+ GYG R Y G SDR +SGG RD Y
Sbjct: 116 RGGGDRGYGGN-RFESRSGGYGGSRDYYSSRSQSGGYSDR-SSGGSYRDSYDSY 167
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 159 (61.0 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 30/79 (37%), Positives = 51/79 (64%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++ VGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
Score = 71 (30.1 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 27/74 (36%), Positives = 34/74 (45%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRY--ASGG--PARDDGRGYRSRAAPYD 267
G GG + G G+ RG+ R G R G R+ SGG +RD RS+ D
Sbjct: 95 GGSTGGRGFFR-GGRGRGRGFSRGGGDRGYGGSRFDSRSGGYNGSRDYYNSSRSQGGYGD 153
Query: 268 RPSRGD-RPSFDRY 280
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 61 (26.5 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 20/53 (37%), Positives = 24/53 (45%)
Query: 210 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
R GDR YGGS R+ GY R Y ++ G +SGG RD Y
Sbjct: 116 RGGGDRGYGGS-RFDSRSGGYNGSRDYYNSSRSQGGYGDRSSGGSYRDSYDSY 167
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 159 (61.0 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 30/79 (37%), Positives = 51/79 (64%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++ VGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
Score = 71 (30.1 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 27/74 (36%), Positives = 34/74 (45%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRY--ASGG--PARDDGRGYRSRAAPYD 267
G GG + G G+ RG+ R G R G R+ SGG +RD RS+ D
Sbjct: 95 GGSTGGRGFFR-GGRGRGRGFSRGGGDRGYGGSRFDSRSGGYNGSRDYYNSSRSQGGYGD 153
Query: 268 RPSRGD-RPSFDRY 280
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
Score = 61 (26.5 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 20/53 (37%), Positives = 24/53 (45%)
Query: 210 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
R GDR YGGS R+ GY R Y ++ G +SGG RD Y
Sbjct: 116 RGGGDRGYGGS-RFDSRSGGYNGSRDYYNSSRSQGGYGDRSSGGSYRDSYDSY 167
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 162 (62.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 30/84 (35%), Positives = 52/84 (61%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++F+GGL+++ E LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 3 DEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDA 62
Query: 65 IREMHGREFGDRVISVNKAQPKMG 88
+ M+G+ R I V++A G
Sbjct: 63 MMAMNGKAVDGRQIRVDQAGKSSG 86
Score = 66 (28.3 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 32/87 (36%), Positives = 38/87 (43%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVNGYGKERGYE-RDVGARA-GSDRY--ASGGPARDDG-R 257
R AG + +GDR GG G G RG R G R GS R+ SGG G R
Sbjct: 77 RVDQAG-KSSGDRRGGYRGGSSGGRGFFRGGRGRGGGDRGYGSSRFDNRSGGYGGSSGSR 135
Query: 258 GY----RSRAAPYDRPSRGDRPSFDRY 280
Y RS+ + DR R S+D Y
Sbjct: 136 DYYSSGRSQGSYGDRAGGSYRDSYDSY 162
Score = 48 (22.0 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 16/34 (47%), Positives = 17/34 (50%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGY 227
GSRD Y S R G GDR GGS R + Y
Sbjct: 133 GSRDYYSSGR--SQGSY--GDRAGGSYRDSYDSY 162
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 158 (60.7 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+E ++FVGGL++N E+ LE+ F FG I E ++ +R++ R RGFGFIT+ + A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+R M+G R I V+ A
Sbjct: 64 MRAMNGESLDGRQIRVDHA 82
Score = 70 (29.7 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 23/51 (45%), Positives = 25/51 (49%)
Query: 210 RLAGDRYGGSDRY---PVNGYGKERGYERDVGAR--AGSDRYASGGPARDD 255
R GD+ GS RY GYG G RD R G DRY SGG RD+
Sbjct: 105 RGGGDQGYGSGRYYDSRPGGYGYGYGRSRDYNGRNQGGYDRY-SGGNYRDN 154
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 153 (58.9 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 71 MNGKSLDGKAIKVEQA 86
Score = 91 (37.1 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
Identities = 36/80 (45%), Positives = 38/80 (47%)
Query: 188 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 239
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 218 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 271
Query: 240 RAGSDRYASGGPARDDGRGY 259
R SD + SGG RD Y
Sbjct: 272 RDYSD-HPSGGSYRDSYESY 290
Score = 44 (20.5 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 23/72 (31%), Positives = 29/72 (40%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVN-GYGKERGYERDVGARAGSDRYASGGPARDDGRGYRS 261
R P+G + GG R PV+ G G R + D Y S P RDDG +
Sbjct: 166 RSAPSGPVRSSSGMGG--RAPVSRGRDSYGGPPRREPLPSRRDVYLS--P-RDDGYSTKD 220
Query: 262 RAAPYDRPSRGD 273
+ D PS D
Sbjct: 221 SYSSRDYPSSRD 232
Score = 40 (19.1 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 223 PVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
P G RG G G+ S G DDG GY
Sbjct: 101 PPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDG-GY 136
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 153 (58.9 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
Score = 91 (37.1 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 36/80 (45%), Positives = 38/80 (47%)
Query: 188 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 239
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 216 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 269
Query: 240 RAGSDRYASGGPARDDGRGY 259
R SD + SGG RD Y
Sbjct: 270 RDYSD-HPSGGSYRDSYESY 288
Score = 44 (20.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 23/72 (31%), Positives = 29/72 (40%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVN-GYGKERGYERDVGARAGSDRYASGGPARDDGRGYRS 261
R P+G + GG R PV+ G G R + D Y S P RDDG +
Sbjct: 164 RSAPSGPVRSSSGMGG--RAPVSRGRDSYGGPPRREPLPSRRDVYLS--P-RDDGYSTKD 218
Query: 262 RAAPYDRPSRGD 273
+ D PS D
Sbjct: 219 SYSSRDYPSSRD 230
Score = 40 (19.1 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 13/37 (35%), Positives = 14/37 (37%)
Query: 223 PVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
P G RG G G+ S G DDG GY
Sbjct: 99 PPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDG-GY 134
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 153 (58.9 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
Score = 91 (37.1 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 36/80 (45%), Positives = 38/80 (47%)
Query: 188 SKDSKYGSRDRYVSDR----Y-PPAGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGA 239
+KDS Y SRD Y S R Y PP D D YG S D YP GY GY RD
Sbjct: 215 TKDS-YSSRD-YPSSRDTRDYAPPPRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD--- 268
Query: 240 RAGSDRYASGGPARDDGRGY 259
R SD + SGG RD Y
Sbjct: 269 RDYSD-HPSGGSYRDSYESY 287
Score = 44 (20.5 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 23/72 (31%), Positives = 29/72 (40%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVN-GYGKERGYERDVGARAGSDRYASGGPARDDGRGYRS 261
R P+G + GG R PV+ G G R + D Y S P RDDG +
Sbjct: 163 RSAPSGPVRSSSGMGG--RAPVSRGRDSYGGPPRREPLPSRRDVYLS--P-RDDGYSTKD 217
Query: 262 RAAPYDRPSRGD 273
+ D PS D
Sbjct: 218 SYSSRDYPSSRD 229
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 165 (63.1 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
Score = 59 (25.8 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 22/65 (33%), Positives = 29/65 (44%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPY-D 267
G GG + G G+ RG+ R G R G +R+ S R Y RS++ Y D
Sbjct: 95 GGSAGGRGFFR-GGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQSGGYSD 153
Query: 268 RPSRG 272
R S G
Sbjct: 154 RSSGG 158
Score = 54 (24.1 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 20/45 (44%), Positives = 23/45 (51%)
Query: 210 RLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAG-SDRYASGG 250
R GDR YGG+ R+ GYG R Y G SDR +SGG
Sbjct: 116 RGGGDRGYGGN-RFESRSGGYGGSRDYYSSRSQSGGYSDR-SSGG 158
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 164 (62.8 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
Score = 60 (26.2 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 194 GSRDRYVSDRYPPAG-DRLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAGSDRY-AS 248
G R + R G R GDR YGG R+ GYG R Y ++ GS Y +S
Sbjct: 99 GGRGFFRGGRSRGRGFSRGGGDRGYGGG-RFESRSGGYGGSRDYYAS-RSQGGSYGYRSS 156
Query: 249 GGPARDDGRGY 259
GG RD Y
Sbjct: 157 GGSYRDSYDSY 167
Score = 58 (25.5 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 24/74 (32%), Positives = 30/74 (40%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPYD- 267
G GG + G + RG+ R G R G R+ S R Y RS+ Y
Sbjct: 95 GGSAGGRGFFR-GGRSRGRGFSRGGGDRGYGGGRFESRSGGYGGSRDYYASRSQGGSYGY 153
Query: 268 RPSRGD-RPSFDRY 280
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 164 (62.8 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
Score = 60 (26.2 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 194 GSRDRYVSDRYPPAG-DRLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAGSDRY-AS 248
G R + R G R GDR YGG R+ GYG R Y ++ GS Y +S
Sbjct: 99 GGRGFFRGGRSRGRGFSRGGGDRGYGGG-RFESRSGGYGGSRDYYAS-RSQGGSYGYRSS 156
Query: 249 GGPARDDGRGY 259
GG RD Y
Sbjct: 157 GGSYRDSYDSY 167
Score = 58 (25.5 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 24/74 (32%), Positives = 30/74 (40%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPYD- 267
G GG + G + RG+ R G R G R+ S R Y RS+ Y
Sbjct: 95 GGSAGGRGFFR-GGRSRGRGFSRGGGDRGYGGGRFESRSGGYGGSRDYYASRSQGGSYGY 153
Query: 268 RPSRGD-RPSFDRY 280
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 164 (62.8 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
Score = 60 (26.2 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 26/71 (36%), Positives = 31/71 (43%)
Query: 194 GSRDRYVSDRYPPAG-DRLAGDR-YGGSDRYPVN--GYGKERGYERDVGARAGSDRY-AS 248
G R + R G R GDR YGG R+ GYG R Y ++ GS Y +S
Sbjct: 99 GGRGFFRGGRSRGRGFSRGGGDRGYGGG-RFESRSGGYGGSRDYYAS-RSQGGSYGYRSS 156
Query: 249 GGPARDDGRGY 259
GG RD Y
Sbjct: 157 GGSYRDSYDSY 167
Score = 58 (25.5 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 24/74 (32%), Positives = 30/74 (40%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY---RSRAAPYD- 267
G GG + G + RG+ R G R G R+ S R Y RS+ Y
Sbjct: 95 GGSAGGRGFFR-GGRSRGRGFSRGGGDRGYGGGRFESRSGGYGGSRDYYASRSQGGSYGY 153
Query: 268 RPSRGD-RPSFDRY 280
R S G R S+D Y
Sbjct: 154 RSSGGSYRDSYDSY 167
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 162 (62.1 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 33/86 (38%), Positives = 54/86 (62%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++F+GGL++ E LE AF ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 3 DEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDA 62
Query: 65 IREMHGREFGDRVISVNKAQPKMGGE 90
+ M+G+ R I V++A K GE
Sbjct: 63 MMAMNGKSVDGRQIRVDQAG-KSSGE 87
Score = 62 (26.9 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 31/87 (35%), Positives = 38/87 (43%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVNGYGKERGYE-RDVGARA-GSDRY--ASGGPARDDG-R 257
R AG + +G+R GG G G RG R G R GS R+ SGG G R
Sbjct: 77 RVDQAG-KSSGERRGGYRGGSSGGRGFFRGGRGRGGGDRGYGSSRFDNRSGGYGGSSGSR 135
Query: 258 GY----RSRAAPYDRPSRGDRPSFDRY 280
Y RS+ + DR R S+D Y
Sbjct: 136 DYYGSGRSQGSYGDRSGGSYRDSYDSY 162
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 145 (56.1 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+E ++FVGGL++N E+ LE+ F FG I E ++ + ++ R +GFGFIT+ + +A
Sbjct: 4 EEGKLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+R +G R I V+ A
Sbjct: 64 MRATNGESLDGRQIHVDHA 82
Score = 77 (32.2 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 30/81 (37%), Positives = 38/81 (46%)
Query: 207 AGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYAS--GGPARDDGRG----YR 260
AG G R GG+ +GY + RG++ GS RY S GG G G Y
Sbjct: 82 AGKSARGTR-GGAFEAHGHGYSRGRGHQS-----YGSSRYDSLPGGYGYGYGYGRSRDYG 135
Query: 261 SRAAPYDRPSRGD-RPSFDRY 280
S YDR S G+ R ++DRY
Sbjct: 136 SSQGSYDRYSGGNYRDNYDRY 156
Score = 37 (18.1 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 188 SKD--SKYGSRDRYVSDRYPPAGDR 210
S+D S GS DRY Y DR
Sbjct: 131 SRDYGSSQGSYDRYSGGNYRDNYDR 155
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 165 (63.1 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGG+ +V ++ E F ++G II+ Q+ML++D+G+ RGFGF+TY A+D +
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 303
Query: 68 MHGREFGDRVISVNKAQPK 86
+F DR I + +A+P+
Sbjct: 304 KF-IDFKDRKIEIKRAEPR 321
Score = 146 (56.5 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 27/83 (32%), Positives = 52/83 (62%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
K+ ++F+GGL+W+ TE L F ++G + + +IM + +GR RGFGF+++ ++D+
Sbjct: 156 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDE 215
Query: 64 AIREMHGREFGDRVISVNKAQPK 86
++ H + G +VI +A P+
Sbjct: 216 VVKTQHILD-G-KVIDPKRAIPR 236
Score = 68 (29.0 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 226 GYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRGDRP 275
GY ++RG +RD R + SGG R +GRG R Y+R + G P
Sbjct: 486 GYNRDRG-DRDRNDRDRDYNHRSGGNHRRNGRGGRGG---YNRRNNGYHP 531
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 170 (64.9 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 27/82 (32%), Positives = 51/82 (62%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D+ ++F+GG+SW+ E L F FG++++ +M E+ +GRPRGFGF+ ++D +D
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63
Query: 65 IREMHGREFGDRVISVNKAQPK 86
+++ H +R + V +A +
Sbjct: 64 LQDKH--HIDNRDVDVKRAMSR 83
Score = 119 (46.9 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 23/79 (29%), Positives = 45/79 (56%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGL +T + F+ +G + + IM+++ + RPRGFGF+++ ++D + +
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK 170
Query: 68 MHGREFGDRVISVNKAQPK 86
+ + + V +A PK
Sbjct: 171 TF-HDLNGKQVEVKRALPK 188
Score = 57 (25.1 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 19/62 (30%), Positives = 24/62 (38%)
Query: 190 DSKYGSRDRYVSDRYPPAGDRLAGDRYG-GSDRYPVNGYGKERGYERDVGARAGSDRYAS 248
DS + + YPP G G YG GS+ G+G GY GA G+
Sbjct: 224 DSNRYMQPQNTGSGYPPYGGSGYGTGYGYGSNGVGYGGFG---GYGNPAGAPYGNPSVPG 280
Query: 249 GG 250
G
Sbjct: 281 AG 282
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 171 (65.3 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 34/83 (40%), Positives = 52/83 (62%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
++IFVGGLS + L+ AF FGKI++ ++L+R+SG RGFGF+TY ++A++
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 67 EMHGREFGDRVISVNKAQPKMGG 89
M +E R+I V+ A GG
Sbjct: 96 AMQNKELDGRIIGVHPADSGGGG 118
Score = 42 (19.8 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 226 GYGKERGYERDVGARAGSDRYASGGPARDD--GRGY 259
G G G+ R G G YA GG R G GY
Sbjct: 116 GGGGGGGFARRGGYGGGRGGYARGGFGRGGFGGGGY 151
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 159 (61.0 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 30/79 (37%), Positives = 51/79 (64%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++ VGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
Score = 54 (24.1 bits), Expect = 5.2e-16, Sum P(2) = 5.2e-16
Identities = 18/43 (41%), Positives = 21/43 (48%)
Query: 188 SKDSKY-GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGK 229
S+ Y GSRD Y S GDR +G Y D Y + YGK
Sbjct: 130 SRSGGYNGSRDYYNSRSQGGYGDRSSGGSY--RDSY--DSYGK 168
Score = 52 (23.4 bits), Expect = 8.4e-16, Sum P(2) = 8.4e-16
Identities = 22/70 (31%), Positives = 29/70 (41%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARA-GSDRYASGGPARDDGRGY-RSRAAPYDRPS 270
G GG + G G+ RG+ R G R G R+ S + R Y SR+ +
Sbjct: 95 GGSTGGRGFFR-GGRGRGRGFSRGGGDRGYGGSRFDSRSGGYNGSRDYYNSRS----QGG 149
Query: 271 RGDRPSFDRY 280
GDR S Y
Sbjct: 150 YGDRSSGGSY 159
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 162 (62.1 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 29/76 (38%), Positives = 52/76 (68%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGGLSW+ +++ L++ F +FG++++C I ++ ++GR RGFGFI + D +++ + +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 68 MHGREFGDRVISVNKA 83
R G RVI KA
Sbjct: 61 KEHRLDG-RVIDPKKA 75
Score = 100 (40.3 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 4 KDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD 62
KD +IFVGGL+ TE ++ F FG+I ++ ++ S + RGF FIT+ + +
Sbjct: 80 KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVK 139
Query: 63 DAI-REMH 69
+ ++ H
Sbjct: 140 KVLEKKFH 147
Score = 53 (23.7 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPY 266
G YGG D P YG GY+ GS Y G ++ G G+++ PY
Sbjct: 219 GPGYGGYDYSPYGYYGYGPGYDYS----QGSTNY---GKSQRRG-GHQNNYKPY 264
Score = 44 (20.5 bits), Expect = 4.8e-15, Sum P(2) = 4.8e-15
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 218 GSDRYPVNGYGKERGYERDVGARAGSDR-YASGGPARDDGRG 258
G Y GYG ++GY G S Y GP D +G
Sbjct: 203 GYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQG 244
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 168 (64.2 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
Identities = 30/80 (37%), Positives = 54/80 (67%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D ++FVGGLSW+ +++ L++ F +FG++++C I ++ ++GR RGFGFI + D +++
Sbjct: 67 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
Query: 64 AIREMHGREFGDRVISVNKA 83
+ + R G RVI KA
Sbjct: 127 VLDQKEHRLDG-RVIDPKKA 145
Score = 104 (41.7 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 4 KDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD 62
KD +IFVGGL+ TE ++ F FG+I ++ ++ + RGF FIT+ + +
Sbjct: 150 KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVK 209
Query: 63 DAIREMHGREFGDRVISVNKAQPK 86
+ + G + + AQPK
Sbjct: 210 KVLEKKFHTVSGSKC-EIKVAQPK 232
Score = 53 (23.7 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPY 266
G YGG D P YG GY+ GS Y G ++ G G+++ PY
Sbjct: 282 GPGYGGYDYSPYGYYGYGPGYDYS----QGSTNY---GKSQRRG-GHQNNYKPY 327
Score = 44 (20.5 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 218 GSDRYPVNGYGKERGYERDVGARAGSDR-YASGGPARDDGRG 258
G Y GYG ++GY G S Y GP D +G
Sbjct: 266 GYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQG 307
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 160 (61.4 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MAGMNGKTVDGRQIRVDQA 82
Score = 52 (23.4 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPY 266
G YGGS R+ G G+ D + S R +S G GR YR Y
Sbjct: 113 GGGYGGSSRFDNRSGGGYGGWIPDYYS---SGRESSYGDRSAGGRSYRDSYDSY 163
Score = 42 (19.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 197 DRYVSDRYPPAGDRLAGDR-YGGS-DRY 222
D Y S R GDR AG R Y S D Y
Sbjct: 136 DYYSSGRESSYGDRSAGGRSYRDSYDSY 163
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 168 (64.2 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
Identities = 30/80 (37%), Positives = 54/80 (67%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D ++FVGGLSW+ +++ L++ F +FG++++C I ++ ++GR RGFGFI + D +++
Sbjct: 71 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 130
Query: 64 AIREMHGREFGDRVISVNKA 83
+ + R G RVI KA
Sbjct: 131 VLDQKEHRLDG-RVIDPKKA 149
Score = 103 (41.3 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 4 KDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD 62
KD +IFVGGL+ TE ++ F +FG+I ++ ++ + RGF FIT+ + +
Sbjct: 154 KDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVK 213
Query: 63 DAIREMHGREFGDRVISVNKAQPK 86
+ + G + + AQPK
Sbjct: 214 KVLEKKFHTVSGSKC-EIKVAQPK 236
Score = 53 (23.7 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPY 266
G YGG D P YG GY+ GS Y G ++ G G+++ PY
Sbjct: 286 GPGYGGYDYSPYGYYGYGPGYDYS----QGSTNY---GKSQRRG-GHQNNYKPY 331
Score = 44 (20.5 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 218 GSDRYPVNGYGKERGYERDVGARAGSDR-YASGGPARDDGRG 258
G Y GYG ++GY G S Y GP D +G
Sbjct: 270 GYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQG 311
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 168 (64.2 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 30/80 (37%), Positives = 54/80 (67%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D ++FVGGLSW+ +++ L++ F +FG++++C I ++ ++GR RGFGFI + D +++
Sbjct: 66 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 125
Query: 64 AIREMHGREFGDRVISVNKA 83
+ + R G RVI KA
Sbjct: 126 VLDQKEHRLDG-RVIDPKKA 144
Score = 95 (38.5 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 4 KDE-NRIFVGGLS-WNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAM 61
KD +IFVGGL+ + TE ++ F FG+I ++ ++ + RGF FIT+ + +
Sbjct: 149 KDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPV 208
Query: 62 DDAIREMHGREFGDRVISVNKAQPK 86
+ + G + + AQPK
Sbjct: 209 KKVLEKKFHTVSGSKC-EIKVAQPK 232
Score = 53 (23.7 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPY 266
G YGG D P YG GY+ GS Y G ++ G G+++ PY
Sbjct: 287 GPGYGGYDYSPYGYYGYGPGYDYS----QGSTNY---GKSQRRG-GHQNNYKPY 332
Score = 44 (20.5 bits), Expect = 6.2e-15, Sum P(2) = 6.2e-15
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 218 GSDRYPVNGYGKERGYERDVGARAGSDR-YASGGPARDDGRG 258
G Y GYG ++GY G S Y GP D +G
Sbjct: 271 GYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQG 312
Score = 35 (17.4 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 222 YPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
Y YG R+ G R GG ++ +GY
Sbjct: 235 YQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGY 272
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 168 (64.2 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 30/80 (37%), Positives = 54/80 (67%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D ++FVGGLSW+ +++ L++ F +FG++++C I ++ ++GR RGFGFI + D +++
Sbjct: 72 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 131
Query: 64 AIREMHGREFGDRVISVNKA 83
+ + R G RVI KA
Sbjct: 132 VLDQKEHRLDG-RVIDPKKA 150
Score = 103 (41.3 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 4 KDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD 62
KD +IFVGGL+ TE ++ F +FG+I ++ ++ + RGF FIT+ + +
Sbjct: 155 KDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVK 214
Query: 63 DAIREMHGREFGDRVISVNKAQPK 86
+ + G + + AQPK
Sbjct: 215 KVLEKKFHTVSGSKC-EIKVAQPK 237
Score = 53 (23.7 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPY 266
G YGG D P YG GY+ GS Y G ++ G G+++ PY
Sbjct: 287 GPGYGGYDYSPYGYYGYGPGYDYS----QGSTNY---GKSQRRG-GHQNNYKPY 332
Score = 44 (20.5 bits), Expect = 6.2e-15, Sum P(2) = 6.2e-15
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 218 GSDRYPVNGYGKERGYERDVGARAGSDR-YASGGPARDDGRG 258
G Y GYG ++GY G S Y GP D +G
Sbjct: 271 GYGNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQG 312
>TAIR|locus:2147625 [details] [associations]
symbol:AT5G19960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P33240 EMBL:AY093121 EMBL:BT003382 IPI:IPI00545520
RefSeq:NP_568388.1 UniGene:At.31237 ProteinModelPortal:Q8RWF8
SMR:Q8RWF8 IntAct:Q8RWF8 STRING:Q8RWF8 PRIDE:Q8RWF8
EnsemblPlants:AT5G19960.1 GeneID:832118 KEGG:ath:AT5G19960
TAIR:At5g19960 InParanoid:Q8RWF8 OMA:GKCYGFV PhylomeDB:Q8RWF8
ProtClustDB:CLSN2689809 ArrayExpress:Q8RWF8 Genevestigator:Q8RWF8
Uniprot:Q8RWF8
Length = 337
Score = 168 (64.2 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 32/92 (34%), Positives = 57/92 (61%)
Query: 1 MAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRA 60
M D N ++VGGL +++TE + F +G ++ +I+ +R S R + +GF+T+++RR+
Sbjct: 1 MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDR-SVRGKCYGFVTFSNRRS 59
Query: 61 MDDAIREMHGREFGDRVISVNKAQPKMGGEVS 92
DDAI +M G+ G R + VN + GG ++
Sbjct: 60 ADDAIEDMDGKSIGGRAVRVNDVTTR-GGRMN 90
Score = 52 (23.4 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 25/86 (29%), Positives = 34/86 (39%)
Query: 189 KDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYAS 248
KD +Y ++R Y + D +R D NGY KER ++ D G G Y
Sbjct: 134 KDHRYIEKER----AYEHSHDF---ERRNDHDMVDRNGY-KERVFDGDEGDWRGDRSYV- 184
Query: 249 GGPARDDGRGYRSRAAPYDRPSRGDR 274
D+GRG +A R R
Sbjct: 185 -----DNGRGINGTSAHEGRSQETKR 205
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 155 (59.6 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 28/83 (33%), Positives = 54/83 (65%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
++IFVGG+S++ E L AF ++G++++ +I+++R++GR RGF F+T+ +A+
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM- 92
Query: 67 EMHGREFGDRVISVNKAQPKMGG 89
++ G++ R I VN A + G
Sbjct: 93 QLDGQDLHGRRIRVNYATERGSG 115
Score = 62 (26.9 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 22/62 (35%), Positives = 26/62 (41%)
Query: 206 PAGDRLAG-DRYGGSDRYPVN-----GYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
PAG G YGG+ Y N GYG Y + G G+ Y+ G A G GY
Sbjct: 138 PAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSYGGNAGGYGGNPPYS--GNAVGGGGGY 195
Query: 260 RS 261
S
Sbjct: 196 GS 197
Score = 53 (23.7 bits), Expect = 9.1e-15, Sum P(2) = 9.1e-15
Identities = 17/65 (26%), Positives = 24/65 (36%)
Query: 193 YGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPV-NGYGKERGYERDVGARAG-SDRYASGG 250
YG Y + G G +GG Y V G G + + AG D++ S
Sbjct: 178 YGGNPPYSGNAVGGGGGY--GSNFGGGGGYGVAGGVGGSENFAQGSSTNAGFDDKFESNQ 235
Query: 251 PARDD 255
P +D
Sbjct: 236 PLGND 240
Score = 50 (22.7 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 15/60 (25%), Positives = 24/60 (40%)
Query: 216 YGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRGDRP 275
YGG+ Y N G GY + G G G + + +G + A +D ++P
Sbjct: 178 YGGNPPYSGNAVGGGGGYGSNFGGGGGYGVAGGVGGSENFAQGSSTNAG-FDDKFESNQP 236
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 160 (61.4 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 25/74 (33%), Positives = 52/74 (70%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D ++FVGGLSW+ +++ L++ F +FG++++C I ++ ++GR RGFGFI + + ++D
Sbjct: 42 EDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDR 101
Query: 64 AIREMHGREFGDRV 77
+++ R G ++
Sbjct: 102 VLQQKEHRLDGRQI 115
Score = 109 (43.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 1 MAGKDE--NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADR 58
MA K E +IFVGGL+ TE ++ F FG+I ++ + + + RGF FIT+ +
Sbjct: 121 MAIKKEPVKKIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEE 180
Query: 59 RAMDDAIREMHGREFGDRVISVNKAQPK 86
A+ + + + G + + AQPK
Sbjct: 181 FAVKKILEKKYHNVCGSKC-EIKIAQPK 207
Score = 57 (25.1 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 23/63 (36%), Positives = 28/63 (44%)
Query: 216 YGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSR-AAPYDR-PSRGD 273
YGG Y GYG ++GY G D Y+SG G Y + AA Y + P RG
Sbjct: 248 YGGQG-Y---GYGGQQGYG-GYGGYGNYD-YSSGYYGYGSGYDYTDQGAASYGKTPRRGG 301
Query: 274 RPS 276
S
Sbjct: 302 HQS 304
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 173 (66.0 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 37/92 (40%), Positives = 53/92 (57%)
Query: 4 KDEN-RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD 62
+DE ++FVGGLSW T+ L F RFG II+C +M +SGR RGFGF+T+AD ++
Sbjct: 3 EDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVN 62
Query: 63 DAIRE----MHGREFGDRVISVNKAQ-PKMGG 89
++ + GR + + Q PK GG
Sbjct: 63 HVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGG 94
Score = 149 (57.5 bits), Expect = 8.8e-11, Sum P(2) = 8.8e-11
Identities = 30/89 (33%), Positives = 55/89 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL NVTE L F+R+GK+ E IM +++ + RGFGF+++ + +++ E
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Query: 68 MHGREFGDRVISVNKAQPK--MGGEVSDH 94
+ G +V + KA+P+ GG+ S++
Sbjct: 157 RYINLNGKQV-EIKKAEPRDGSGGQNSNN 184
Score = 47 (21.6 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 19/75 (25%), Positives = 26/75 (34%)
Query: 206 PAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAP 265
P G Y G + GYG GY+ G+ SGG + + + A P
Sbjct: 267 PQGPPPQWSNYAGPQQ--TQGYG---GYDMYNSTSTGAPSGPSGGGSWNSWNMPPNSAGP 321
Query: 266 YDRPSRGDRPSFDRY 280
P G + D Y
Sbjct: 322 TGAPGAGAGTATDMY 336
Score = 46 (21.3 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 24/94 (25%), Positives = 35/94 (37%)
Query: 193 YGSRDRYVSDRY-PPAGDRLAGD----RYGGSDRYPVNGYGKERGYERDVGARAGSDRYA 247
YG D Y S P+G G + P G G D+ +RA + +A
Sbjct: 286 YGGYDMYNSTSTGAPSGPSGGGSWNSWNMPPNSAGPTGAPGAGAGTATDMYSRAQA--WA 343
Query: 248 SGGPARDDGRGYRSRAAPYDRPSR-GDRPSFDRY 280
+GGP+ G R P + S+ G + Y
Sbjct: 344 TGGPSTTGPVGGMPRTGPGNSASKSGSEYDYGGY 377
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 153 (58.9 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 32/91 (35%), Positives = 49/91 (53%)
Query: 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD 62
G +IF+GGL + T F ++G+I + IM +R +G+PRGFGFIT+AD +D
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVD 74
Query: 63 DAIREMHGREFGDRVISVNKAQPK-MGGEVS 92
I + H + + + + PK GG S
Sbjct: 75 KVIEDTH--VINGKQVEIKRTIPKGAGGNQS 103
Score = 151 (58.2 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 25/79 (31%), Positives = 50/79 (63%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGG+ VTE +L++ F ++G ++E Q++ + ++ R RGFGF+ + +D+ + +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 68 MHGREFGDRVISVNKAQPK 86
+ + D + + KA+PK
Sbjct: 170 GNMIDMADTQVEIKKAEPK 188
Score = 73 (30.8 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
Identities = 24/70 (34%), Positives = 26/70 (37%)
Query: 201 SDRYPPAGDRLAGDRYGGSDRYPVNGY--GKERGYERDVGARAGSDRYASGGPARDDGRG 258
S R+ P G G+ YG GY G GY G G Y SGGP G
Sbjct: 281 SSRFGPYGSGFGGEGYGRGGEGAYLGYPRGGGEGYGGYGGPGYGG-AYESGGP----GGS 335
Query: 259 YRSRAAPYDR 268
Y PY R
Sbjct: 336 YEGAGGPYGR 345
Score = 61 (26.5 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 25/68 (36%), Positives = 30/68 (44%)
Query: 204 YPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGS--DRYASG--GPARDDGR-G 258
+PP R G G + RY GYG RG VG G + Y G G R++ G
Sbjct: 227 HPPGPIRSHG---GPASRY-AGGYGYGRG---SVGPEFGGGYNNYGGGSLGGYRNEPPLG 279
Query: 259 YRSRAAPY 266
Y SR PY
Sbjct: 280 YSSRFGPY 287
Score = 52 (23.4 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 27/75 (36%), Positives = 31/75 (41%)
Query: 193 YGS--RDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVG---AR-AGSDRY 246
YGS R R +D Y G G YGG D GYG G R G +R AG Y
Sbjct: 198 YGSHPRGRSSNDSYASYG----GP-YGGFD----GGYGHPPGPIRSHGGPASRYAGGYGY 248
Query: 247 ASGGPARDDGRGYRS 261
G + G GY +
Sbjct: 249 GRGSVGPEFGGGYNN 263
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 177 (67.4 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 34/79 (43%), Positives = 52/79 (65%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGG+ VTE + +N F +FGKII+CQ+M+++D+GR RGFGF+TY A+D
Sbjct: 247 KIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCVN 306
Query: 68 MHGREFGDRVISVNKAQPK 86
+ G + + V +A P+
Sbjct: 307 KYLTLKG-KAMEVKRAAPR 324
Score = 162 (62.1 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAM 61
AG + F+GGLSW+ TE L + F ++G I++ IM + +GR RGFGF+T+ D +++
Sbjct: 157 AGGPSRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSV 216
Query: 62 DDAIREMH 69
D +++ H
Sbjct: 217 DALLKDRH 224
Score = 43 (20.2 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 13/29 (44%), Positives = 13/29 (44%)
Query: 246 YASGGPARDDGRGYRSRAAPYDRPSRGDR 274
Y GG R GRG R Y SRG R
Sbjct: 448 YRGGG--RGGGRGGYRRGRGYHPYSRGGR 474
Score = 37 (18.1 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 253 RDDGRGYRSRAAPYDRPSRGDRPSFDRY 280
+D GR YD P+ D+ ++Y
Sbjct: 281 KDTGRSRGFGFVTYDSPAAVDKVCVNKY 308
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 168 (64.2 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGG+SW T N F +FG++++ IM +R +G PRGFGF+T+AD + + E
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 68 MHGREFGDRVISVNKAQPKMGGEVSD 93
H DR + + + P+ G + +D
Sbjct: 127 DH--VIDDRKVDLKRTLPR-GDKDTD 149
Score = 162 (62.1 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGL + E +L+N F +G IIE QIM + +GR RGFGF+T+ ++D +
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSD 217
Query: 68 MHGREFGDRVISVNKAQPKMGG 89
E GD+ + + +A+PK G
Sbjct: 218 GKVHELGDKQVEIKRAEPKRTG 239
Score = 47 (21.6 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 25/83 (30%), Positives = 31/83 (37%)
Query: 192 KYGSRDRYVSDRYPPAGDRLAG-DRYGGSDRYPVN---------GYGKERGYERDVGARA 241
KY D Y S + +G YGG Y N GYG GY G +
Sbjct: 252 KYDQEDSY-SGKANEDYSMYSGYGGYGGYGAYAGNSMVNPAGFYGYGGGYGYGYGYGGQM 310
Query: 242 GSDRYASGGPARDDGRGYRSRAA 264
+ Y +GG + G GY AA
Sbjct: 311 FNMGYGAGGYSHM-GSGYGVAAA 332
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 32/80 (40%), Positives = 54/80 (67%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
NR++VG LSW V + LE+ F GK++E +++ +RDSGR +GFGF+TY + + +AI+
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 67 EMHGREFGDRVISVNKAQPK 86
+ G + R I V++A+ +
Sbjct: 264 SLDGADLDGRQIRVSEAEAR 283
Score = 130 (50.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVG L +NV QL F+ G + +++ ++ +GR RGFGF+T + ++ A ++
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 68 MHGREFGDRVISVNKAQP 85
+G E R + VN P
Sbjct: 152 FNGYELDGRPLRVNAGPP 169
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 166 (63.5 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 26/81 (32%), Positives = 54/81 (66%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+DE ++F+GGLSW+ T++ L++ F +FG++++C + L+ +GR RGFGF+ + + ++D
Sbjct: 42 EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 101
Query: 64 AIREMHGREFGDRVISVNKAQ 84
+ + + +VI +A+
Sbjct: 102 -VMDQKEHKLNGKVIDPKRAK 121
Score = 43 (20.2 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 238 GARAGSDRYASGGPARDDGRGY 259
G AG R GGP+++ +GY
Sbjct: 221 GGFAGRARGRGGGPSQNWNQGY 242
Score = 43 (20.2 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 216 YGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
YGG Y GY GY ++G + + G ++ + Y
Sbjct: 260 YGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 303
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 161 (61.7 bits), Expect = 7.1e-15, Sum P(2) = 7.1e-15
Identities = 26/83 (31%), Positives = 55/83 (66%)
Query: 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAM 61
A ++E ++F+GGLSW+ T++ L++ F +FG++++C + L+ +GR RGFGF+ + + ++
Sbjct: 25 AQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 84
Query: 62 DDAIREMHGREFGDRVISVNKAQ 84
D + + + +VI +A+
Sbjct: 85 DK-VMDQKEHKLNGKVIDPKRAK 106
Score = 43 (20.2 bits), Expect = 7.1e-15, Sum P(2) = 7.1e-15
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 238 GARAGSDRYASGGPARDDGRGY 259
G AG R GGP+++ +GY
Sbjct: 206 GGFAGRARGRGGGPSQNWNQGY 227
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 139 (54.0 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+E ++FVGGL++N ++ LE+ F I E I+ +R++ R RGFGFIT+ + +
Sbjct: 4 EEGKLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNV 63
Query: 65 IREMHGREFGDRVISVNKA 83
+R M+G R I V+ A
Sbjct: 64 MRAMNGESLDGRQIHVDHA 82
Score = 63 (27.2 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 26/66 (39%), Positives = 35/66 (53%)
Query: 193 YGSRDRYVSDRYPPAGDRLAGD-RYGGSDRYPVNGYGKERGYERDVGARA-GS-DRYASG 249
+G+R R S G++ +G+ RY V GYG G RD G+R+ GS D Y SG
Sbjct: 94 FGARGRGYSRG---GGEQGSGNGRYDSRPGGYVYGYGY--GKSRDYGSRSQGSYDSY-SG 147
Query: 250 GPARDD 255
G RD+
Sbjct: 148 GNCRDN 153
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 167 (63.8 bits), Expect = 8.9e-15, Sum P(2) = 8.9e-15
Identities = 29/81 (35%), Positives = 55/81 (67%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+DE ++FVGGLSW+ T++ L++ F +FG++++C + L+ +GR RGFGF+ + + +++
Sbjct: 51 EDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEK 110
Query: 64 AIREMHGREFGDRVISVNKAQ 84
I + + G +VI KA+
Sbjct: 111 VITQKEHKLNG-KVIDPKKAK 130
Score = 102 (41.0 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 21/80 (26%), Positives = 49/80 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS + E ++ FD +G++ ++ +E + + RGF FIT+ + ++ +++
Sbjct: 140 KIFVGGLSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKE----EEPVKK 195
Query: 68 MHGREFGDRVISVNKAQPKM 87
+ +++ + I ++K + K+
Sbjct: 196 IMEKKYHN--IGLSKCEVKV 213
Score = 42 (19.8 bits), Expect = 8.9e-15, Sum P(2) = 8.9e-15
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 216 YGGSDRYPVNGYGKERGY 233
YGG Y +GY GY
Sbjct: 271 YGGYGGYDYSGYNNYYGY 288
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 32/79 (40%), Positives = 51/79 (64%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLSW + L +AF FG +++ +++++R++GR RGFGF+ + D A AI E
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 68 MHGREFGDRVISVNKAQPK 86
M G+E R I VN A +
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 147 (56.8 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+++E +M +R++ + RGF F+T+ DA RE
Sbjct: 9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68
Query: 68 MHGREFGDRVISVNKA 83
++G+ + I V +A
Sbjct: 69 LNGKALDGKPIKVEQA 84
Score = 84 (34.6 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 33/95 (34%), Positives = 40/95 (42%)
Query: 189 KDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKE-RGYE-RDVGARAGSDRY 246
+D Y +DRY D Y +G YG S YG R Y RD G + D Y
Sbjct: 185 RDDGYSGKDRY--DGY-------SGRDYGSSR--DSRDYGPPPRDYAYRDYGHSSSRDDY 233
Query: 247 ASGGPARDDGRGYRSRAAPYDRPSRGD-RPSFDRY 280
S G + DG G R D PS G R S++ Y
Sbjct: 234 GSRGYSDRDGYGGRDSRDYSDHPSGGSYRDSYESY 268
Score = 57 (25.1 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 26/70 (37%), Positives = 28/70 (40%)
Query: 203 RYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSR 262
R PP G L G R GGS R + +RG G R A GP R G G R
Sbjct: 104 RGPPRG--LRGSRGGGSSRGQMP---LKRGPPPRSGGPPPK-RSAPSGPVRSSGMGGR-- 155
Query: 263 AAPYDRPSRG 272
AP R G
Sbjct: 156 -APLSRERDG 164
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 164 (62.8 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 26/81 (32%), Positives = 53/81 (65%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+DE ++F+GGLSW+ T++ L++ F +FG +++C + L+ +GR RGFGF+ + + ++D
Sbjct: 73 EDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDK 132
Query: 64 AIREMHGREFGDRVISVNKAQ 84
+ + + +VI +A+
Sbjct: 133 -VMDQKEHKLNGKVIDPKRAK 152
Score = 43 (20.2 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 238 GARAGSDRYASGGPARDDGRGY 259
G AG R GGP+++ +GY
Sbjct: 252 GGFAGRARGRGGGPSQNWNQGY 273
Score = 43 (20.2 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 216 YGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
YGG Y GY GY ++G + + G ++ + Y
Sbjct: 291 YGGYGGYDYTGYNSYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 334
Score = 36 (17.7 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 218 GSDRYPVNGYGKERGYE 234
GS Y GYG GY+
Sbjct: 282 GSYGYNSQGYGGYGGYD 298
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 32/77 (41%), Positives = 53/77 (68%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
+++FVGGLSW + L+ AF FG++ E ++ +R++GR RGFGF++++ + ++AI+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 67 EMHGREFGDRVISVNKA 83
EM G+E R I VN A
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 153 (58.9 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 69 MNGKSLDGKAIKVEQA 84
Score = 44 (20.5 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 189 KDSKYGSRDRYVSDRYPPAGD 209
+D Y ++D Y S YP + D
Sbjct: 97 RDDGYSTKDSYSSRDYPSSRD 117
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 159 (61.0 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 27/87 (31%), Positives = 53/87 (60%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D+ ++F+GGLSW+ +++ L RFG++++C I + +GR RGFGF+ + D ++D
Sbjct: 26 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 85
Query: 64 AIREMHGREFGDRVISVNKAQPKMGGE 90
+ E+ + ++I +A+ G E
Sbjct: 86 VL-ELKEHKLDGKLIDPKRAKALKGKE 111
Score = 126 (49.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 1 MAGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRR 59
+ GK+ ++FVGGLS + +E Q++ F FG+I ++ ++ + RGF FITY D
Sbjct: 107 LKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEE 166
Query: 60 AMDDAIREMHGREFGDRVISVNKAQPK 86
+ + + + G + AQPK
Sbjct: 167 PVKKLLESRY-HQIGSGKCEIKVAQPK 192
Score = 45 (20.9 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 16/60 (26%), Positives = 23/60 (38%)
Query: 197 DRYVSDRYPPAGDRLAGDR----YGGSDR--YPVNGYGKERGYERDVGARAGSDRYASGG 250
+ Y Y GD+ YGG D Y YG +GY G ++ + + GG
Sbjct: 232 NNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGG 291
Score = 35 (17.4 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 13/47 (27%), Positives = 16/47 (34%)
Query: 212 AGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRG 258
AG R G R G +G+ G+ A GG G G
Sbjct: 210 AGGRGGARGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYG 256
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 170 (64.9 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 32/87 (36%), Positives = 51/87 (58%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW + L + F +FG+I EC +M + + R RGFGF+T+AD ++D
Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKV 78
Query: 65 IREMH----GREFGDRVISVNKAQPKM 87
+ + H + +V +AQPKM
Sbjct: 79 LAQPHHELDSKTIDPKVAFPRRAQPKM 105
Score = 158 (60.7 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
Identities = 28/79 (35%), Positives = 50/79 (63%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N ++ F++FGK+ + +M ++ + R RGFGF+T+ + ++ + E
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCE 169
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 170 IHFHEINNKMVECKKAQPK 188
Score = 40 (19.1 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 247 ASGGPARDDGRGYRSRAAPYDRPSRGDRPSFDRY 280
A+ AR GRG R R Y + P F Y
Sbjct: 256 AAVAAARGSGRGARGRGG-YAAYPQSTGPGFPDY 288
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 158 (60.7 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 29/76 (38%), Positives = 50/76 (65%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGGLSW+ +++ L++ F +FG++ +C I ++ ++GR RGFGFI + D ++D +
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 68 MHGREFGDRVISVNKA 83
R G R+I KA
Sbjct: 125 KEHRLDG-RLIDPKKA 139
Score = 101 (40.6 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 4 KDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD 62
KD +IFVGGL+ E Q+ F+ FG+I ++ ++ + + RGF FIT+ + +
Sbjct: 144 KDPIKKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVK 203
Query: 63 DAIREMHGREFGDRVISVNKAQPK 86
+ + G + + AQPK
Sbjct: 204 KILEKKFHNVSGSKC-EIKIAQPK 226
Score = 48 (22.0 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 16/51 (31%), Positives = 20/51 (39%)
Query: 216 YGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPY 266
YGG Y +GYG GY GS Y P R +++ PY
Sbjct: 279 YGGYGNYDYSGYGYY-GYGPGYDYSQGSANYGKA-PRRGS---HQNNYKPY 324
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 165 (63.1 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 30/85 (35%), Positives = 49/85 (57%)
Query: 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAM 61
+ D ++F+GG+SW+ E +L+ F ++G ++E IM +R +GR RGFGFI +AD
Sbjct: 10 SASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVA 69
Query: 62 DDAIREMHGREFGDRVISVNKAQPK 86
+ I + H R + KA P+
Sbjct: 70 ERVIMDKH--IIDGRTVEAKKAVPR 92
Score = 163 (62.4 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD 62
G +IFVGGL ++TE + +N FD+FG I + +M + ++ RPRGFGFIT+ ++D
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVD 177
Query: 63 DAIREMHGREFGDRVISVNKAQPK 86
+ + E +++ V +A PK
Sbjct: 178 MVLHKTF-HELNGKMVEVKRAVPK 200
Score = 45 (20.9 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 210 RLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
R+ G++Y S P N Y GY R A S+R G + G G+
Sbjct: 286 RIPGNQYFNSAS-P-NRYNSPIGYNRGDSAYNPSNRDLWGNRSDSSGPGW 333
>WB|WBGene00004703 [details] [associations]
symbol:rsp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008406 "gonad development"
evidence=IMP] [GO:0040026 "positive regulation of vulval
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0031554
"regulation of DNA-dependent transcription, termination"
evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
GO:GO:0040027 GO:GO:0000398 GO:GO:0040026 EMBL:FO080768
GO:GO:0001703 GeneTree:ENSGT00700000104452 GO:GO:0031554
HOGENOM:HOG000276234 PIR:T34145 RefSeq:NP_741446.1
RefSeq:NP_741447.1 RefSeq:NP_741448.1 ProteinModelPortal:Q18409
SMR:Q18409 DIP:DIP-27100N IntAct:Q18409 MINT:MINT-1118164
STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409 EnsemblMetazoa:C33H5.12a.1
EnsemblMetazoa:C33H5.12a.2 GeneID:177566 KEGG:cel:CELE_C33H5.12
UCSC:C33H5.12a.1 CTD:177566 WormBase:C33H5.12a WormBase:C33H5.12b
WormBase:C33H5.12c eggNOG:NOG315521 InParanoid:Q18409 KO:K12896
OMA:VELSHGQ NextBio:897392 Uniprot:Q18409
Length = 179
Score = 131 (51.2 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+++VGGL + T ++LE FDRFG+I + + + R RP GF F+ Y D R +DA+R
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRK--VWVAR---RPPGFAFVEYDDVRDAEDAVRA 58
Query: 68 MHG-REFGDRV-ISVNKAQPKMGG 89
+ G R G R + ++ Q + GG
Sbjct: 59 LDGSRICGVRARVELSTGQRRGGG 82
Score = 63 (27.2 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 23/62 (37%), Positives = 26/62 (41%)
Query: 208 GDRLAGDRYGGSDRYPVNG-YGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPY 266
G G GG DR P G G+ R RD G DR S +RD R RSR
Sbjct: 85 GGGFGGRGGGGRDRSPYRGDRGRSRSRSRDRGRDRSRDR--SRDRSRDRSRD-RSRERSR 141
Query: 267 DR 268
+R
Sbjct: 142 ER 143
Score = 49 (22.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 24/76 (31%), Positives = 29/76 (38%)
Query: 193 YGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPA 252
+G R DR P GDR R DR G + R RD DR
Sbjct: 88 FGGRGGGGRDRSPYRGDR-GRSRSRSRDR----GRDRSRDRSRDRSRDRSRDRSRERSRE 142
Query: 253 RDDGRGYRSRAAPYDR 268
R+ R RSR+ P +R
Sbjct: 143 RERTRS-RSRS-PQER 156
Score = 46 (21.3 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 18/49 (36%), Positives = 19/49 (38%)
Query: 232 GYERDVGARAGS-DRYASGGPARDDGRGYRSRAAPYDRPSRGDRPSFDR 279
G R G R G GG R RG R R+ R DR S DR
Sbjct: 76 GQRRGGGGRGGGFGGRGGGGRDRSPYRGDRGRSRSRSRDRGRDR-SRDR 123
>UNIPROTKB|Q18409 [details] [associations]
symbol:rsp-6 "Probable splicing factor,
arginine/serine-rich 6" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0008406 "gonad development" evidence=IGI] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0040027
GO:GO:0000398 GO:GO:0040026 EMBL:FO080768 GO:GO:0001703
GeneTree:ENSGT00700000104452 GO:GO:0031554 HOGENOM:HOG000276234
PIR:T34145 RefSeq:NP_741446.1 RefSeq:NP_741447.1 RefSeq:NP_741448.1
ProteinModelPortal:Q18409 SMR:Q18409 DIP:DIP-27100N IntAct:Q18409
MINT:MINT-1118164 STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409
EnsemblMetazoa:C33H5.12a.1 EnsemblMetazoa:C33H5.12a.2 GeneID:177566
KEGG:cel:CELE_C33H5.12 UCSC:C33H5.12a.1 CTD:177566
WormBase:C33H5.12a WormBase:C33H5.12b WormBase:C33H5.12c
eggNOG:NOG315521 InParanoid:Q18409 KO:K12896 OMA:VELSHGQ
NextBio:897392 Uniprot:Q18409
Length = 179
Score = 131 (51.2 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+++VGGL + T ++LE FDRFG+I + + + R RP GF F+ Y D R +DA+R
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRK--VWVAR---RPPGFAFVEYDDVRDAEDAVRA 58
Query: 68 MHG-REFGDRV-ISVNKAQPKMGG 89
+ G R G R + ++ Q + GG
Sbjct: 59 LDGSRICGVRARVELSTGQRRGGG 82
Score = 63 (27.2 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
Identities = 23/62 (37%), Positives = 26/62 (41%)
Query: 208 GDRLAGDRYGGSDRYPVNG-YGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPY 266
G G GG DR P G G+ R RD G DR S +RD R RSR
Sbjct: 85 GGGFGGRGGGGRDRSPYRGDRGRSRSRSRDRGRDRSRDR--SRDRSRDRSRD-RSRERSR 141
Query: 267 DR 268
+R
Sbjct: 142 ER 143
Score = 49 (22.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 24/76 (31%), Positives = 29/76 (38%)
Query: 193 YGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPA 252
+G R DR P GDR R DR G + R RD DR
Sbjct: 88 FGGRGGGGRDRSPYRGDR-GRSRSRSRDR----GRDRSRDRSRDRSRDRSRDRSRERSRE 142
Query: 253 RDDGRGYRSRAAPYDR 268
R+ R RSR+ P +R
Sbjct: 143 RERTRS-RSRS-PQER 156
Score = 46 (21.3 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 18/49 (36%), Positives = 19/49 (38%)
Query: 232 GYERDVGARAGS-DRYASGGPARDDGRGYRSRAAPYDRPSRGDRPSFDR 279
G R G R G GG R RG R R+ R DR S DR
Sbjct: 76 GQRRGGGGRGGGFGGRGGGGRDRSPYRGDRGRSRSRSRDRGRDR-SRDR 123
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 161 (61.7 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 26/83 (31%), Positives = 55/83 (66%)
Query: 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAM 61
A ++E ++F+GGLSW+ T++ L++ F +FG++++C + L+ +GR RGFGF+ + + ++
Sbjct: 92 AQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 151
Query: 62 DDAIREMHGREFGDRVISVNKAQ 84
D + + + +VI +A+
Sbjct: 152 DK-VMDQKEHKLNGKVIDPKRAK 173
Score = 43 (20.2 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 238 GARAGSDRYASGGPARDDGRGY 259
G AG R GGP+++ +GY
Sbjct: 273 GGFAGRARGRGGGPSQNWNQGY 294
Score = 43 (20.2 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 216 YGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
YGG Y GY GY ++G + + G ++ + Y
Sbjct: 312 YGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 161 (61.7 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 26/83 (31%), Positives = 55/83 (66%)
Query: 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAM 61
A ++E ++F+GGLSW+ T++ L++ F +FG++++C + L+ +GR RGFGF+ + + ++
Sbjct: 92 AQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 151
Query: 62 DDAIREMHGREFGDRVISVNKAQ 84
D + + + +VI +A+
Sbjct: 152 DK-VMDQKEHKLNGKVIDPKRAK 173
Score = 43 (20.2 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 238 GARAGSDRYASGGPARDDGRGY 259
G AG R GGP+++ +GY
Sbjct: 273 GGFAGRARGRGGGPSQNWNQGY 294
Score = 43 (20.2 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 216 YGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
YGG Y GY GY ++G + + G ++ + Y
Sbjct: 312 YGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 161 (61.7 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 26/83 (31%), Positives = 55/83 (66%)
Query: 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAM 61
A ++E ++F+GGLSW+ T++ L++ F +FG++++C + L+ +GR RGFGF+ + + ++
Sbjct: 92 AQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 151
Query: 62 DDAIREMHGREFGDRVISVNKAQ 84
D + + + +VI +A+
Sbjct: 152 DK-VMDQKEHKLNGKVIDPKRAK 173
Score = 43 (20.2 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 238 GARAGSDRYASGGPARDDGRGY 259
G AG R GGP+++ +GY
Sbjct: 273 GGFAGRARGRGGGPSQNWNQGY 294
Score = 43 (20.2 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 216 YGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
YGG Y GY GY ++G + + G ++ + Y
Sbjct: 312 YGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 161 (61.7 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 26/83 (31%), Positives = 55/83 (66%)
Query: 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAM 61
A ++E ++F+GGLSW+ T++ L++ F +FG++++C + L+ +GR RGFGF+ + + ++
Sbjct: 92 AQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 151
Query: 62 DDAIREMHGREFGDRVISVNKAQ 84
D + + + +VI +A+
Sbjct: 152 DK-VMDQKEHKLNGKVIDPKRAK 173
Score = 43 (20.2 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 238 GARAGSDRYASGGPARDDGRGY 259
G AG R GGP+++ +GY
Sbjct: 273 GGFAGRARGRGGGPSQNWNQGY 294
Score = 43 (20.2 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 216 YGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
YGG Y GY GY ++G + + G ++ + Y
Sbjct: 312 YGGYGGYDYTGYNNYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 355
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 174 (66.3 bits), Expect = 7.5e-14, Sum P(2) = 7.5e-14
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GG+SW+ E +L+ F FG++IE I+ +R +GR RGFGF+ +AD +
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63
Query: 65 IREMHGREFGDRVISVNKAQPK 86
I E H + G R++ KA P+
Sbjct: 64 ITEKHNID-G-RLVEAKKAVPR 83
Score = 149 (57.5 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI-R 66
+IFVGGL +VTE + F++FG + +M + ++ RPRGFGFITY A++ + +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 67 EMHGREFGDRVISVNKAQPK 86
H E +++ V +A PK
Sbjct: 169 TFH--ELNGKMVEVKRAVPK 186
Score = 35 (17.4 bits), Expect = 7.5e-14, Sum P(2) = 7.5e-14
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 79 SVNKAQPKMG 88
SVNK QP G
Sbjct: 482 SVNKRQPNRG 491
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 165 (63.1 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
Identities = 34/91 (37%), Positives = 54/91 (59%)
Query: 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD 62
G +IFVGGL ++TE + +N FD+FG I + +M + ++ RPRGFGFIT+ A+D
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 63 DAIREMHGREFGDRVISVNKAQPKMGGEVSD 93
+ + E +++ V +A PK VS+
Sbjct: 166 RVLHKTF-HELNGKLVEVKRAVPKEISPVSN 195
Score = 160 (61.4 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GG+SW+ E +L + F +G ++E IM +R +GR RGFGFI +AD +
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 65 IREMHGREFGDRVISVNKAQPK 86
I + H R + KA P+
Sbjct: 64 IMDKH--IIDGRTVEAKKAVPR 83
Score = 43 (20.2 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 212 AGDRYGG-SDRYPVNGY 227
+G YGG S+R P N Y
Sbjct: 202 SGVNYGGGSNRMPANSY 218
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 164 (62.8 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N+IFVGG+ N E +L F +FG + E ++ + + RPRGFGFIT+ D +++D A+
Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Query: 67 EMHGREFGDRVISVNKAQPK 86
MH + + + V +A+P+
Sbjct: 173 -MHFHDIMGKKVEVKRAEPR 191
Score = 142 (55.0 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 26/90 (28%), Positives = 50/90 (55%)
Query: 2 AGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRA 60
+G DE ++FVGGL W+ T+ L + F ++G++++C IM ++ + + RGFGF+ + D
Sbjct: 4 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63
Query: 61 MDDAIRE----MHGREFGDRVISVNKAQPK 86
+ + + GR + + QP+
Sbjct: 64 VGTVLASRPHTLDGRNIDPKPCTPRGMQPE 93
Score = 41 (19.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 21/83 (25%), Positives = 31/83 (37%)
Query: 204 YPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDV-GARAG-SDRYAS----GGPARDDGR 257
+PP + A D P YG+ GY +D+ G G SD GGP+
Sbjct: 323 FPPPPSQAAPDMSKPPTAQPDFPYGQYAGYGQDLSGFGQGFSDPSQQPPSYGGPSVPGSG 382
Query: 258 GYRSRAAPYDRPSRGDRPSFDRY 280
G + + + R + F Y
Sbjct: 383 GPPAGGSGFGRGQNHNVQGFHPY 405
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 159 (61.0 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 26/83 (31%), Positives = 54/83 (65%)
Query: 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAM 61
A ++E ++F+GGLSW+ T++ L++ F +FG +++C + L+ +GR RGFGF+ + + ++
Sbjct: 90 AQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESV 149
Query: 62 DDAIREMHGREFGDRVISVNKAQ 84
D + + + +VI +A+
Sbjct: 150 DK-VMDQKEHKLNGKVIDPKRAK 171
Score = 43 (20.2 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 238 GARAGSDRYASGGPARDDGRGY 259
G AG R GGP+++ +GY
Sbjct: 271 GGFAGRARGRGGGPSQNWNQGY 292
Score = 43 (20.2 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 216 YGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
YGG Y GY GY ++G + + G ++ + Y
Sbjct: 310 YGGYGGYDYTGYNSYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 353
Score = 36 (17.7 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 218 GSDRYPVNGYGKERGYE 234
GS Y GYG GY+
Sbjct: 301 GSYGYNSQGYGGYGGYD 317
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 159 (61.0 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 26/83 (31%), Positives = 54/83 (65%)
Query: 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAM 61
A ++E ++F+GGLSW+ T++ L++ F +FG +++C + L+ +GR RGFGF+ + + ++
Sbjct: 90 AQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESV 149
Query: 62 DDAIREMHGREFGDRVISVNKAQ 84
D + + + +VI +A+
Sbjct: 150 DK-VMDQKEHKLNGKVIDPKRAK 171
Score = 43 (20.2 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 238 GARAGSDRYASGGPARDDGRGY 259
G AG R GGP+++ +GY
Sbjct: 271 GGFAGRARGRGGGPSQNWNQGY 292
Score = 43 (20.2 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 216 YGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
YGG Y GY GY ++G + + G ++ + Y
Sbjct: 310 YGGYGGYDYTGYNSYYGYGDYSNQQSGYGKVSRRGGHQNSYKPY 353
Score = 36 (17.7 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 218 GSDRYPVNGYGKERGYE 234
GS Y GYG GY+
Sbjct: 301 GSYGYNSQGYGGYGGYD 317
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 154 (59.3 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 24/77 (31%), Positives = 51/77 (66%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLSW+ T++ L++ F +FG++++C + L+ +GR RGFGF+ + + ++D + +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK-VMD 59
Query: 68 MHGREFGDRVISVNKAQ 84
+ +VI +A+
Sbjct: 60 QKEHKLNGKVIDPKRAK 76
Score = 98 (39.6 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 24/122 (19%), Positives = 56/122 (45%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS + E ++ F FG++ ++ ++ + + RGF FIT+ + ++ +++
Sbjct: 86 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKE----EEPVKK 141
Query: 68 MHGREFGDRVISVNKAQPKMGGEVSDHXXXXXXXXXXXXXXXXADRPGGQDDCFKCGRPG 127
+ +++ + + ++K + K+ + R GG + G
Sbjct: 142 IMEKKYHN--VGLSKCEIKVAMSKEQYQQQQQWGSRGGFVGRARGRGGGPSQNWNQGYSN 199
Query: 128 HW 129
+W
Sbjct: 200 YW 201
Score = 45 (20.9 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 216 YGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
YGG Y GY GY ++G + + G ++ + Y
Sbjct: 215 YGGYGGYDYTGYNNYYGYSDYSNQQSGYGKVSRRGGHQNSYKPY 258
Score = 39 (18.8 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 238 GARAGSDRYASGGPARDDGRGY 259
G G R GGP+++ +GY
Sbjct: 176 GGFVGRARGRGGGPSQNWNQGY 197
>UNIPROTKB|Q6K9C3 [details] [associations]
symbol:RSZ23 "Serine/arginine-rich splicing factor RSZ23"
species:39947 "Oryza sativa Japonica Group" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP008208
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AP004063 EMBL:AK060088 EMBL:AK099572
EMBL:AK104726 RefSeq:NP_001047400.1 UniGene:Os.12017
ProteinModelPortal:Q6K9C3 STRING:Q6K9C3
EnsemblPlants:LOC_Os02g39720.3 EnsemblPlants:LOC_Os02g39720.4
EnsemblPlants:LOC_Os02g39720.6 GeneID:4329951 KEGG:osa:4329951
Gramene:Q6K9C3 Uniprot:Q6K9C3
Length = 200
Score = 116 (45.9 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
R++VG L VT R++E+ F FG ++ + + R +P GF FI + DRR +DAIR+
Sbjct: 3 RVYVGNLDPRVTAREIEDEFRVFG-VLR-SVWVAR---KPPGFAFIDFDDRRDAEDAIRD 57
Query: 68 MHGREFGDRVISVNKAQPKMGGEVS 92
+ G+ G RV KA G + S
Sbjct: 58 LDGKN-GWRVELSTKAGSGRGRDRS 81
Score = 88 (36.0 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 112 DRPGGQD-DCFKCGRPGHWARDC 133
DR GG D C++CG PGH+AR+C
Sbjct: 79 DRSGGSDMKCYECGEPGHFAREC 101
Score = 59 (25.8 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 25/73 (34%), Positives = 30/73 (41%)
Query: 207 AGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPY 266
AG DR GGSD G+ + R+ R GS SG R R RSR+ Y
Sbjct: 72 AGSGRGRDRSGGSDMKCYE-CGEPGHFARECRLRIGSGGLGSG---RRRSRS-RSRSPRY 126
Query: 267 DRPSRGDRPSFDR 279
SR P + R
Sbjct: 127 RGRSRSRSPRYRR 139
Score = 45 (20.9 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 18/59 (30%), Positives = 21/59 (35%)
Query: 210 RLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDR 268
R RY G R Y + Y R R+ R S P R Y SR+ P R
Sbjct: 120 RSRSPRYRGRSRSRSPRYRRSPSYGRSPRDRSPKRRSYSRSPPPARARSY-SRSPPPPR 177
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 147 (56.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+++E +M +R++ + RGF F+T+ DA RE
Sbjct: 9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68
Query: 68 MHGREFGDRVISVNKA 83
++G+ + I V +A
Sbjct: 69 LNGKALDGKPIKVEQA 84
Score = 76 (31.8 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 32/95 (33%), Positives = 39/95 (41%)
Query: 189 KDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKE-RGYE-RDVGARAGSDRY 246
+D Y +DRY D Y +G YG S YG R Y RD G + D Y
Sbjct: 185 RDDGYSGKDRY--DGY-------SGRDYGSSR--DSRDYGPPPRDYSYRDYGHSSSRDDY 233
Query: 247 ASGGPARDDGRGYRSRAAPYDRPSRGD-RPSFDRY 280
S G + DG G R D S G R S++ Y
Sbjct: 234 GSRGYSDRDGYGGRDSRDYSDHQSGGSYRDSYEGY 268
Score = 71 (30.1 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 39/107 (36%), Positives = 42/107 (39%)
Query: 188 SKDSKYGSRDRYVSDRYPPAGDRLAGDRY-GGSDRYPVNGYGKERGYERDVG---ARAGS 243
S+D YGSR D Y R D GGS R GYG R G + GS
Sbjct: 229 SRDD-YGSRGYSDRDGYGGRDSRDYSDHQSGGSYRDSYEGYGNSRSAPPARGPPPSYGGS 287
Query: 244 DRYASGGPARDD--GR-GYRS-RAAPY----DRPSRGDR---PSFDR 279
RY RD GR Y S R Y DR R +R PS DR
Sbjct: 288 SRYDDYSSTRDGYGGRDSYSSSRNDIYSSGRDRVGRQERGLPPSMDR 334
Score = 67 (28.6 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 32/89 (35%), Positives = 40/89 (44%)
Query: 195 SRDRYVSDRY-PPAGDRLAGDRYGGSDRYPVNGYGKER-GYE-RDVGARAGSDRYASGGP 251
S + Y + R PPA R YGGS RY + Y R GY RD + + +D Y+SG
Sbjct: 264 SYEGYGNSRSAPPA--RGPPPSYGGSSRY--DDYSSTRDGYGGRDSYSSSRNDIYSSGR- 318
Query: 252 ARDDGRGYRSRAAPYDRPSRGDRPSFDRY 280
D G + R P RG P D Y
Sbjct: 319 ---DRVGRQERGLPPSM-DRGYPPPRDSY 343
Score = 58 (25.5 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 26/75 (34%), Positives = 31/75 (41%)
Query: 193 YGSRDRYVSDRYPPAGDRLAGDRYGGSDR-YPVNGYGKERGYE--RDV--GARAGSDRYA 247
YG RD Y S R DR G +R P + +RGY RD + G R
Sbjct: 300 YGGRDSYSSSRNDIYSS--GRDRVGRQERGLPPS---MDRGYPPPRDSYSSSSRGGPRGG 354
Query: 248 SGGPARDDGRGYRSR 262
G +R D G RSR
Sbjct: 355 GRGGSRSDRGGGRSR 369
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 150 (57.9 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 3 GKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAM 61
G D +IFVGGL+ T + F ++G+I + IM +R +G+PRGFGF+TYAD +
Sbjct: 37 GVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVV 96
Query: 62 DDAIREMH 69
D I++ H
Sbjct: 97 DKVIQDNH 104
Score = 146 (56.5 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGG+ +V + + + F +FG++ E QIM + +GR RGFGF+TY +D + +
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 68 MHGREFGDRVISVNKAQPKMGGEVS 92
+ E + + KA+PK V+
Sbjct: 191 GNRIELSGTQVEIKKAEPKKPNSVT 215
Score = 71 (30.1 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 23/56 (41%), Positives = 25/56 (44%)
Query: 213 GDRYGGSDRYPVNGYGKERG-YERDVGARAGSDRYASGGPARDDGRGYRSRAAPYD 267
GD YGGS P GYG G Y G+ +G Y GG G GYR YD
Sbjct: 324 GDMYGGSYGEPGGGYGGPSGSYGGGYGS-SGIGGYG-GGMGGAGGGGYRGGGG-YD 376
Score = 63 (27.2 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 19/58 (32%), Positives = 20/58 (34%)
Query: 213 GDRYGGSDRYPVNGYGK--ERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDR 268
G Y G Y + G G GY G G Y GG G G R PY R
Sbjct: 366 GGGYRGGGGYDMGGVGGGGAGGYGAGGGGNGGGSFYGGGGGRGGYGGGGSGRYHPYGR 423
Score = 58 (25.5 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 21/59 (35%), Positives = 24/59 (40%)
Query: 206 PAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASG-GPARDD-GRGYRSR 262
P G +G YGG GYG GY + G G Y G GP R + GY R
Sbjct: 247 PGGPYKSGGGYGGGRS---GGYG---GYGGEFGGYGGGG-YGGGVGPYRGEPALGYSGR 298
Score = 47 (21.6 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
Identities = 22/67 (32%), Positives = 23/67 (34%)
Query: 213 GDRYGGS-DRY---PVNGY-----GKERGYERDVGARAGSDRYASGGPARDDGRGYRSRA 263
G YGG Y P GY G GY R + G Y GGP G Y
Sbjct: 277 GGGYGGGVGPYRGEPALGYSGRYGGGGGGYNRGGYSMGGGGGYG-GGPGDMYGGSYGEPG 335
Query: 264 APYDRPS 270
Y PS
Sbjct: 336 GGYGGPS 342
Score = 41 (19.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 17/67 (25%), Positives = 22/67 (32%)
Query: 193 YGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPA 252
YG Y +G G GG+ GY GY+ G+ Y +GG
Sbjct: 338 YGGPSGSYGGGYGSSGIGGYGGGMGGAGG---GGYRGGGGYDMGGVGGGGAGGYGAGGGG 394
Query: 253 RDDGRGY 259
G Y
Sbjct: 395 NGGGSFY 401
Score = 39 (18.8 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 16/45 (35%), Positives = 18/45 (40%)
Query: 215 RYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
R+G S GYG GY G G GGP + G GY
Sbjct: 220 RFGDSRSNFGGGYGD--GY----GGGHGGGYGGPGGPYKSGG-GY 257
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 158 (60.7 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D ++FVGGLSW+ +++ L++ F +FG++ +C I ++ ++GR RGFGFI + + +D
Sbjct: 92 EDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDK 151
Query: 64 AIREMHGREFGDRVISVNKA 83
+ + R G R I KA
Sbjct: 152 VLAQKEHRLDG-RQIDPKKA 170
Score = 107 (42.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 1 MAGKDE--NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADR 58
MA K E +IFVGGL+ TE ++ F FG+I ++ ++ S + RGF FIT+ +
Sbjct: 171 MAMKKEPVKKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEE 230
Query: 59 RAMDDAIREMHGREFGDR 76
A+ + + + G +
Sbjct: 231 EAVKKILEKKYHNVSGTK 248
Score = 44 (20.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 18/60 (30%), Positives = 23/60 (38%)
Query: 218 GSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDR-PSRGDRPS 276
G+ Y GYG ++GY G D Y+ G G Y Y + P RG S
Sbjct: 306 GNQGY--GGYGGQQGYG-GYGGYGNYD-YSGGYYGGYGGYDYNQGNTSYGKTPRRGAHQS 361
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 156 (60.0 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 27/84 (32%), Positives = 51/84 (60%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N++F+GGLSW+ +++ L RFG++++C I + +GR RGFGF+ + D ++D +
Sbjct: 51 NKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVL- 109
Query: 67 EMHGREFGDRVISVNKAQPKMGGE 90
E+ + ++I +A+ G E
Sbjct: 110 ELKEHKLDGKLIDPKRAKALKGKE 133
Score = 126 (49.4 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 1 MAGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRR 59
+ GK+ ++FVGGLS + +E Q++ F FG+I ++ ++ + RGF FITY D
Sbjct: 129 LKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEE 188
Query: 60 AMDDAIREMHGREFGDRVISVNKAQPK 86
+ + + + G + AQPK
Sbjct: 189 PVKKLLESRY-HQIGSGKCEIKVAQPK 214
Score = 43 (20.2 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 216 YGGSDR--YPVNGYGKERGYERDVGARAGSDRYASGG 250
YGG D Y YG +GY G ++ + + GG
Sbjct: 276 YGGYDYTGYNYGSYGYGQGYTDYSGQQSTYGKASRGG 312
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 156 (60.0 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 27/84 (32%), Positives = 51/84 (60%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N++F+GGLSW+ +++ L RFG++++C I + +GR RGFGF+ + D ++D +
Sbjct: 51 NKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVL- 109
Query: 67 EMHGREFGDRVISVNKAQPKMGGE 90
E+ + ++I +A+ G E
Sbjct: 110 ELKEHKLDGKLIDPKRAKALKGKE 133
Score = 126 (49.4 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 1 MAGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRR 59
+ GK+ ++FVGGLS + +E Q++ F FG+I ++ ++ + RGF FITY D
Sbjct: 129 LKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEE 188
Query: 60 AMDDAIREMHGREFGDRVISVNKAQPK 86
+ + + + G + AQPK
Sbjct: 189 PVKKLLESRY-HQIGSGKCEIKVAQPK 214
Score = 43 (20.2 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 216 YGGSDR--YPVNGYGKERGYERDVGARAGSDRYASGG 250
YGG D Y YG +GY G ++ + + GG
Sbjct: 276 YGGYDYTGYNYGSYGYGQGYTDYSGQQSTYGKASRGG 312
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 159 (61.0 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 27/87 (31%), Positives = 53/87 (60%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D+ ++F+GGLSW+ +++ L RFG++++C I + +GR RGFGF+ + D ++D
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Query: 64 AIREMHGREFGDRVISVNKAQPKMGGE 90
+ E+ + ++I +A+ G E
Sbjct: 205 VL-ELKEHKLDGKLIDPKRAKALKGKE 230
Score = 126 (49.4 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 1 MAGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRR 59
+ GK+ ++FVGGLS + +E Q++ F FG+I ++ ++ + RGF FITY D
Sbjct: 226 LKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEE 285
Query: 60 AMDDAIREMHGREFGDRVISVNKAQPK 86
+ + + + G + AQPK
Sbjct: 286 PVKKLLESRY-HQIGSGKCEIKVAQPK 311
Score = 45 (20.9 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 16/60 (26%), Positives = 23/60 (38%)
Query: 197 DRYVSDRYPPAGDRLAGDR----YGGSDR--YPVNGYGKERGYERDVGARAGSDRYASGG 250
+ Y Y GD+ YGG D Y YG +GY G ++ + + GG
Sbjct: 351 NNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGG 410
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 159 (61.0 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 27/87 (31%), Positives = 53/87 (60%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D+ ++F+GGLSW+ +++ L RFG++++C I + +GR RGFGF+ + D ++D
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Query: 64 AIREMHGREFGDRVISVNKAQPKMGGE 90
+ E+ + ++I +A+ G E
Sbjct: 205 VL-ELKEHKLDGKLIDPKRAKALKGKE 230
Score = 126 (49.4 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 1 MAGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRR 59
+ GK+ ++FVGGLS + +E Q++ F FG+I ++ ++ + RGF FITY D
Sbjct: 226 LKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEE 285
Query: 60 AMDDAIREMHGREFGDRVISVNKAQPK 86
+ + + + G + AQPK
Sbjct: 286 PVKKLLESRY-HQIGSGKCEIKVAQPK 311
Score = 45 (20.9 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 16/60 (26%), Positives = 23/60 (38%)
Query: 197 DRYVSDRYPPAGDRLAGDR----YGGSDR--YPVNGYGKERGYERDVGARAGSDRYASGG 250
+ Y Y GD+ YGG D Y YG +GY G ++ + + GG
Sbjct: 351 NNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGG 410
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 159 (61.0 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 27/87 (31%), Positives = 53/87 (60%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D+ ++F+GGLSW+ +++ L RFG++++C I + +GR RGFGF+ + D ++D
Sbjct: 145 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 204
Query: 64 AIREMHGREFGDRVISVNKAQPKMGGE 90
+ E+ + ++I +A+ G E
Sbjct: 205 VL-ELKEHKLDGKLIDPKRAKALKGKE 230
Score = 126 (49.4 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 1 MAGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRR 59
+ GK+ ++FVGGLS + +E Q++ F FG+I ++ ++ + RGF FITY D
Sbjct: 226 LKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEE 285
Query: 60 AMDDAIREMHGREFGDRVISVNKAQPK 86
+ + + + G + AQPK
Sbjct: 286 PVKKLLESRY-HQIGSGKCEIKVAQPK 311
Score = 45 (20.9 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 16/60 (26%), Positives = 23/60 (38%)
Query: 197 DRYVSDRYPPAGDRLAGDR----YGGSDR--YPVNGYGKERGYERDVGARAGSDRYASGG 250
+ Y Y GD+ YGG D Y YG +GY G ++ + + GG
Sbjct: 351 NNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGG 410
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
E+++FVG LSW VT L AF G ++ +++ + D+GR RG+GF+ Y+ + M+ A+
Sbjct: 176 EHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 235
Query: 66 REMHGREFGDRVISVNKAQPK 86
+ G E R I VN AQ K
Sbjct: 236 ESLDGFELEGRAIRVNLAQGK 256
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 151 (58.2 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 27/76 (35%), Positives = 51/76 (67%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGGLSW+ +++ L++ F +FG++ +C I ++ ++GR RGFGFI + + +++ + +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 68 MHGREFGDRVISVNKA 83
R G R+I KA
Sbjct: 61 KEHRLDG-RLIDPKKA 75
Score = 106 (42.4 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 4 KDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD 62
KD +IFVGGL+ TE ++ F FG+I ++ ++ + + RGF FIT+ + +
Sbjct: 80 KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVK 139
Query: 63 DAIREMHGREFGDRVISVNKAQPK 86
+ + G + + AQPK
Sbjct: 140 KVLEKKFHNVSGSKC-EIKVAQPK 162
Score = 57 (25.1 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 18/57 (31%), Positives = 23/57 (40%)
Query: 218 GSDRYPVNGYGKER-GYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDR-PSRG 272
G Y GYG + GY++ G G D G G Y +A Y + P RG
Sbjct: 198 GYGNYWNQGYGNQGYGYQQGYGGYGGYDYSGYGYYGYGPGYDYSQGSANYGKTPRRG 254
Score = 50 (22.7 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
Identities = 17/51 (33%), Positives = 21/51 (41%)
Query: 216 YGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPY 266
YGG Y +GYG GY GS Y P R G+++ PY
Sbjct: 218 YGGYGGYDYSGYGYY-GYGPGYDYSQGSANYGKT-PRRG---GHQNNYKPY 263
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+W+ T+ L F R+G I E ++ +RD+ R RGFGF+ +A D A+
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 68 MHGREFGDRVISVNKAQPK 86
M+ +EF R+I V+KA +
Sbjct: 63 MNNQEFDGRIIRVDKASER 81
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 33/85 (38%), Positives = 56/85 (65%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
+++F+GGLS+ TE+ L AF + G+++E QI+++R S R +GFGF+T+A A+
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 67 EMHGREFGDRVISVN--KAQPKMGG 89
E +G++ R I V+ KA+ +GG
Sbjct: 94 EFNGQQLNGRTIFVDYAKAKQSLGG 118
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 159 (61.0 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 30/79 (37%), Positives = 50/79 (63%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGG+ N E +L + F+RFG + E ++ + + RPRGFGFIT+ +++D A+
Sbjct: 114 KIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVN- 172
Query: 68 MHGREFGDRVISVNKAQPK 86
MH + + + V KA+P+
Sbjct: 173 MHFHDIMGKKVEVKKAEPR 191
Score = 159 (61.0 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 28/90 (31%), Positives = 51/90 (56%)
Query: 1 MAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD--- 57
+AG + ++FVGGL W+ T+ L N F ++G++++C IM ++ + + RGFGF+ + D
Sbjct: 5 LAGDEIGKLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNC 64
Query: 58 -RRAMDDAIREMHGREFGDRVISVNKAQPK 86
R +D + GR + + QP+
Sbjct: 65 VRTVLDTKPHNLDGRNIDPKPCTPRGMQPE 94
Score = 41 (19.5 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 216 YGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGP 251
+G YP G+ + + G G A G P
Sbjct: 277 FGAPQGYPQQGFSTQPQFGYSFGTPQGDQFVAQGMP 312
Score = 40 (19.1 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 223 PVNGYGKERGYERDVGARAGSDRYASGGPARD 254
P G+G +GY + + Y+ G P D
Sbjct: 273 PTGGFGAPQGYPQQGFSTQPQFGYSFGTPQGD 304
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 164 (62.8 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N+IFVGG+ N E +L F +FG + E ++ + + RPRGFGFIT+ D +++D A+
Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Query: 67 EMHGREFGDRVISVNKAQPK 86
MH + + + V +A+P+
Sbjct: 173 -MHFHDIMGKKVEVKRAEPR 191
Score = 142 (55.0 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 26/90 (28%), Positives = 50/90 (55%)
Query: 2 AGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRA 60
+G DE ++FVGGL W+ T+ L + F ++G++++C IM ++ + + RGFGF+ + D
Sbjct: 4 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63
Query: 61 MDDAIRE----MHGREFGDRVISVNKAQPK 86
+ + + GR + + QP+
Sbjct: 64 VGTVLASRPHTLDGRNIDPKPCTPRGMQPE 93
Score = 35 (17.4 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 20/83 (24%), Positives = 30/83 (36%)
Query: 204 YPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDV-GARAG-SDRYAS----GGPARDDGR 257
+PP + A D P Y + GY +D+ G G SD GGP+
Sbjct: 323 FPPPPSQAAPDMSKPPTAQPDFPYSQYAGYGQDLAGFGQGFSDPSQQPPSYGGPSVPGSG 382
Query: 258 GYRSRAAPYDRPSRGDRPSFDRY 280
G + + + R + F Y
Sbjct: 383 GPPAGGSGFGRGQNHNVQGFHPY 405
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 155 (59.6 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 26/87 (29%), Positives = 53/87 (60%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D+ ++F+GGLSW+ +++ L RFG++++C I + +GR RGFGF+ + D +++
Sbjct: 27 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEK 86
Query: 64 AIREMHGREFGDRVISVNKAQPKMGGE 90
+ E+ + ++I +A+ G E
Sbjct: 87 VL-ELKEHKLDGKLIDPKRAKALKGKE 112
Score = 126 (49.4 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 1 MAGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRR 59
+ GK+ ++FVGGLS + +E Q++ F FG+I ++ ++ + RGF FITY D
Sbjct: 108 LKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEE 167
Query: 60 AMDDAIREMHGREFGDRVISVNKAQPK 86
+ + + + G + AQPK
Sbjct: 168 PVKKLLESRY-HQIGSGKCEIKVAQPK 193
Score = 38 (18.4 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 210 RLAGDRYG--GSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRG 258
+L RY GS + + + Y + + G ASGG GRG
Sbjct: 171 KLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGKSNASGGRGGGRGRG 221
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 164 (62.8 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
Score = 41 (19.5 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 207 AGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAP 265
AG + AG + G + G G + G + G + G + A A G G S +P
Sbjct: 519 AGIQGAGMQGAGMQGGGMQGAGMQGGGMQGAGMQGGGMQGAGMQGASKQGAGQPSSFSP 577
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 163 (62.4 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
Score = 38 (18.4 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 242 GSDRYASG-GPARDDGRGYRSRAAPYDRPSRGDRP 275
G+ + G GP G G ++ P + PS +P
Sbjct: 203 GNQQAVPGPGPGPGPGPGPNAQLNPQNTPSSQPQP 237
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 32/88 (36%), Positives = 58/88 (65%)
Query: 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
+N+I+VG LS++VT +L++ F ++G+I E +++++R++GR +GF FITY + A +A+
Sbjct: 17 QNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAV 76
Query: 66 REMHGREFGDRVISVNKAQPKMGGEVSD 93
+ +G + R I VN A+ G D
Sbjct: 77 SKANGIDLQGRKIRVNIARENTGDRRRD 104
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 32/88 (36%), Positives = 58/88 (65%)
Query: 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
+N+I+VG LS++VT +L++ F ++G+I E +++++R++GR +GF FITY + A +A+
Sbjct: 17 QNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAV 76
Query: 66 REMHGREFGDRVISVNKAQPKMGGEVSD 93
+ +G + R I VN A+ G D
Sbjct: 77 SKANGIDLQGRKIRVNIARENTGDRRRD 104
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 152 (58.6 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 24/76 (31%), Positives = 50/76 (65%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+F+GGLSW+ T++ L++ F +FG++++C + L+ +GR RGFGF+ + + ++D + +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK-VMDQ 59
Query: 69 HGREFGDRVISVNKAQ 84
+ +VI +A+
Sbjct: 60 KEHKLNGKVIDPKRAK 75
Score = 98 (39.6 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 24/122 (19%), Positives = 56/122 (45%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS + E ++ F FG++ ++ ++ + + RGF FIT+ + ++ +++
Sbjct: 85 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKE----EEPVKK 140
Query: 68 MHGREFGDRVISVNKAQPKMGGEVSDHXXXXXXXXXXXXXXXXADRPGGQDDCFKCGRPG 127
+ +++ + + ++K + K+ + R GG + G
Sbjct: 141 IMEKKYHN--VGLSKCEIKVAMSKEQYQQQQQWGSRGGFVGRARGRGGGPSQNWNQGYSN 198
Query: 128 HW 129
+W
Sbjct: 199 YW 200
Score = 45 (20.9 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 216 YGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
YGG Y GY GY ++G + + G ++ + Y
Sbjct: 214 YGGYGGYDYTGYNNYYGYSDYSNQQSGYGKVSRRGGHQNSYKPY 257
Score = 39 (18.8 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 238 GARAGSDRYASGGPARDDGRGY 259
G G R GGP+++ +GY
Sbjct: 175 GGFVGRARGRGGGPSQNWNQGY 196
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 155 (59.6 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 26/87 (29%), Positives = 53/87 (60%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D+ ++F+GGLSW+ +++ L RFG++++C I + +GR RGFGF+ + D +++
Sbjct: 63 QDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEK 122
Query: 64 AIREMHGREFGDRVISVNKAQPKMGGE 90
+ E+ + ++I +A+ G E
Sbjct: 123 VL-ELKEHKLDGKLIDPKRAKALKGKE 148
Score = 126 (49.4 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 1 MAGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRR 59
+ GK+ ++FVGGLS + +E Q++ F FG+I ++ ++ + RGF FITY D
Sbjct: 144 LKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEE 203
Query: 60 AMDDAIREMHGREFGDRVISVNKAQPK 86
+ + + + G + AQPK
Sbjct: 204 PVKKLLESRY-HQIGSGKCEIKVAQPK 229
Score = 38 (18.4 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 210 RLAGDRYG--GSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRG 258
+L RY GS + + + Y + + G ASGG GRG
Sbjct: 207 KLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGKSNASGGRGGGRGRG 257
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 182 (69.1 bits), Expect = 9.0e-13, P = 9.0e-13
Identities = 31/78 (39%), Positives = 53/78 (67%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+ +RI++G ++WNVTE Q+ + F +FG++I C +M D+G+ +GFGF+ + +++ DDA
Sbjct: 767 EASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSADDA 826
Query: 65 IREMHGREFGDRVISVNK 82
I M+G E R I V +
Sbjct: 827 IATMNGFELLGRSIKVGR 844
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 173 (66.0 bits), Expect = 9.7e-13, P = 9.7e-13
Identities = 30/79 (37%), Positives = 51/79 (64%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
R++VG L W+V +LE F GK++E +++ +R++GR RGFGF+T +D +++AI
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 68 MHGREFGDRVISVNKAQPK 86
+ G+ R I VN A+ +
Sbjct: 305 LDGQNLEGRAIRVNVAEER 323
Score = 131 (51.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 23/82 (28%), Positives = 50/82 (60%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+E ++FVG L+++V + L F++ G + +++ R++ + RGFGF+T + + A
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 65 IREMHGREFGDRVISVNKAQPK 86
+ + + + R+++VNKA P+
Sbjct: 208 VEKFNRYDLNGRLLTVNKAAPR 229
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 163 (62.4 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
Score = 38 (18.4 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 242 GSDRYASG-GPARDDGRGYRSRAAPYDRPSRGDRP 275
G+ + G GP G G ++ P + PS +P
Sbjct: 203 GNQQAVPGPGPGPGPGPGPNAQLNPQNTPSSQPQP 237
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 163 (62.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
Score = 38 (18.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 242 GSDRYASG-GPARDDGRGYRSRAAPYDRPSRGDRP 275
G+ + G GP G G ++ P + PS +P
Sbjct: 203 GNQQAVPGPGPGPGPGPGPNAQLNPQNTPSSQPQP 237
>UNIPROTKB|F1S420 [details] [associations]
symbol:F1S420 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU914278 Ensembl:ENSSSCT00000015327 OMA:NHEVAGS Uniprot:F1S420
Length = 300
Score = 170 (64.9 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 27/71 (38%), Positives = 50/71 (70%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D ++FVGGLSW+ +++ L++ F +FG++++C I ++ ++GR RGFGFI + D +++
Sbjct: 79 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 138
Query: 64 AIREMHGREFG 74
I RE+G
Sbjct: 139 VIEIKQRREYG 149
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 168 (64.2 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 30/80 (37%), Positives = 54/80 (67%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D ++FVGGLSW+ +++ L++ F +FG++++C I ++ ++GR RGFGFI + D +++
Sbjct: 67 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
Query: 64 AIREMHGREFGDRVISVNKA 83
+ + R G RVI KA
Sbjct: 127 VLDQKEHRLDG-RVIDPKKA 145
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 26/81 (32%), Positives = 54/81 (66%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+DE ++F+GGLSW+ T++ L++ F +FG++++C + L+ +GR RGFGF+ + + ++D
Sbjct: 75 EDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 134
Query: 64 AIREMHGREFGDRVISVNKAQ 84
+ + + +VI +A+
Sbjct: 135 -VMDQKEHKLNGKVIDPKRAK 154
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 168 (64.2 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 30/80 (37%), Positives = 54/80 (67%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D ++FVGGLSW+ +++ L++ F +FG++++C I ++ ++GR RGFGFI + D +++
Sbjct: 67 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK 126
Query: 64 AIREMHGREFGDRVISVNKA 83
+ + R G RVI KA
Sbjct: 127 VLDQKEHRLDG-RVIDPKKA 145
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 168 (64.2 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 30/80 (37%), Positives = 54/80 (67%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D ++FVGGLSW+ +++ L++ F +FG++++C I ++ ++GR RGFGFI + D +++
Sbjct: 67 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEK 126
Query: 64 AIREMHGREFGDRVISVNKA 83
+ + R G RVI KA
Sbjct: 127 VLDQKEHRLDG-RVIDPKKA 145
Score = 109 (43.4 bits), Expect = 0.00054, P = 0.00054
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 4 KDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD 62
KD +IFVGGL+ TE ++ F FG+I ++ ++ S + RGF FIT+ + +
Sbjct: 150 KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVK 209
Query: 63 DAIREMHGREFGDRVISVNKAQPK 86
+ + G + + AQPK
Sbjct: 210 KVLEKKFHTISGSKC-EIKVAQPK 232
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 168 (64.2 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 30/80 (37%), Positives = 54/80 (67%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D ++FVGGLSW+ +++ L++ F +FG++++C I ++ ++GR RGFGFI + D +++
Sbjct: 72 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 131
Query: 64 AIREMHGREFGDRVISVNKA 83
+ + R G RVI KA
Sbjct: 132 VLDQKEHRLDG-RVIDPKKA 150
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 168 (64.2 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 30/80 (37%), Positives = 54/80 (67%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D ++FVGGLSW+ +++ L++ F +FG++++C I ++ ++GR RGFGFI + D +++
Sbjct: 72 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 131
Query: 64 AIREMHGREFGDRVISVNKA 83
+ + R G RVI KA
Sbjct: 132 VLDQKEHRLDG-RVIDPKKA 150
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 134 (52.2 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++VG + + T QLE F G I I+ +R SG P+G+ +I + ++ A
Sbjct: 26 DGRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQTESVQKA 85
Query: 65 IREMHGREFGDRVISVNKAQPKMGG 89
I E+HG+EF R + V + + G
Sbjct: 86 IDELHGKEFRGRELRVTAKRTNLPG 110
Score = 44 (20.5 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDD 255
G R G R G G+ RG G R G A G ++
Sbjct: 119 GFRARGRGRGGFRGRGRGRGGFNSRGTRNGDSEQADGDAENEE 161
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 168 (64.2 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 30/80 (37%), Positives = 54/80 (67%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D ++FVGGLSW+ +++ L++ F +FG++++C I ++ ++GR RGFGFI + D +++
Sbjct: 85 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEK 144
Query: 64 AIREMHGREFGDRVISVNKA 83
+ + R G RVI KA
Sbjct: 145 VLDQKEHRLDG-RVIDPKKA 163
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 136 (52.9 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLS+ T+ L + F+++G + +C +M + ++ R RGFGF+TYA +D A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 68 MHGREFGDRVISVNKA 83
+ G RV+ +A
Sbjct: 75 RPHKVDG-RVVEPKRA 89
Score = 130 (50.8 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD-AIR 66
+IFVGG+ + E L + F+++GKI +IM +R SG+ RGF F+T+ D ++D I+
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 67 EMH 69
+ H
Sbjct: 166 KYH 168
Score = 82 (33.9 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 28/73 (38%), Positives = 33/73 (45%)
Query: 208 GDRLAGDRYGGS-DRYPVNGYGKERGYERD-VGARAGSDRYASGGPAR-DDGRGYRSRAA 264
G R G YGGS D Y NG+G + GY G GS Y SGG + G GY +
Sbjct: 230 GSR-GGGGYGGSGDGY--NGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGS 286
Query: 265 PYDRPSRGDRPSF 277
YD + G F
Sbjct: 287 -YDSYNNGGGGGF 298
Score = 56 (24.8 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 26/84 (30%), Positives = 31/84 (36%)
Query: 201 SDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GYERDVGARAGSDRYASGGPARDDG-RG 258
+D + G+ +GGS GYG GY G G Y GGP G RG
Sbjct: 213 NDNFGRGGNFSGRGGFGGSRGG--GGYGGSGDGYN-GFGNDGG---YGGGGPGYSGGSRG 266
Query: 259 YRSRAAPYDRPSRG--DRPSFDRY 280
Y S Y G S+D Y
Sbjct: 267 YGSGGQGYGNQGSGYGGSGSYDSY 290
Score = 54 (24.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRG 272
G YGGS Y G G+ G +GS+ + GG D G Y ++++ + P +G
Sbjct: 278 GSGYGGSGSYDSYNNGGGGGF----GGGSGSN-FGGGGSYNDFGN-YNNQSSNFG-PMKG 330
Score = 51 (23.0 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 211 LAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPAR 253
+ G +GG P G G+ R+ G GS +S G R
Sbjct: 328 MKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGR 370
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 170 (64.9 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 31/80 (38%), Positives = 52/80 (65%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N+IFVGG+ N E +L+ F+RFG + E ++ + + RPRGFGFIT+ D +++D A+
Sbjct: 114 NKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 173
Query: 67 EMHGREFGDRVISVNKAQPK 86
MH + + + V +A+P+
Sbjct: 174 -MHFHDIMGKKVEVKRAEPR 192
Score = 140 (54.3 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 26/89 (29%), Positives = 49/89 (55%)
Query: 3 GKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAM 61
G DE ++FVGGL W+ T+ L + F ++G++++C IM ++ + + RGFGF+ + D +
Sbjct: 5 GGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 64
Query: 62 DDAIRE----MHGREFGDRVISVNKAQPK 86
+ + GR + + QP+
Sbjct: 65 GTVLASRPHTLDGRNIDPKPCTPRGMQPE 93
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 165 (63.1 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N+IFVGG+ N E +L F +FG + E ++ + + RPRGFGFIT+ D +++D A+
Sbjct: 91 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 150
Query: 67 EMHGREFGDRVISVNKAQPK 86
MH + + + V +A+P+
Sbjct: 151 -MHFHDIMGKKVEVKRAEPR 169
Score = 141 (54.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 22/57 (38%), Positives = 40/57 (70%)
Query: 2 AGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD 57
+G DE ++FVGGL W+ T+ L + F ++G++++C IM ++ + + RGFGF+ + D
Sbjct: 4 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 60
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 31/85 (36%), Positives = 51/85 (60%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
+++F+GGLSW + L + F +FG+I EC +M + + R RGFGF+T+AD ++D +
Sbjct: 17 SKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG 76
Query: 67 EMH----GREFGDRVISVNKAQPKM 87
+ H + +V +AQPKM
Sbjct: 77 QPHHELDSKTIDPKVAFPRRAQPKM 101
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 32/79 (40%), Positives = 52/79 (65%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
R+FV GLS T +L++AF FG++++ +++ +RDSGR +GFGF+TYA + A E
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 68 MHGREFGDRVISVNKAQPK 86
M+ + VI V+ A+P+
Sbjct: 95 MNAKFLDGWVIFVDPARPR 113
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 164 (62.8 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N+IFVGG+ N E +L F +FG + E ++ + + RPRGFGFIT+ D +++D A+
Sbjct: 140 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 199
Query: 67 EMHGREFGDRVISVNKAQPK 86
MH + + + V +A+P+
Sbjct: 200 -MHFHDIMGKKVEVKRAEPR 218
Score = 133 (51.9 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 19/50 (38%), Positives = 36/50 (72%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD 57
++FVGGL W+ T+ L + F ++G++++C IM ++ + + RGFGF+ + D
Sbjct: 56 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD 105
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 168 (64.2 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 32/87 (36%), Positives = 51/87 (58%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW + L + F +FG+I EC +M + + R RGFGF+T+AD ++D
Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78
Query: 65 IREMH----GREFGDRVISVNKAQPKM 87
+ + H + +V +AQPKM
Sbjct: 79 LGQPHHELDSKTIDPKVAFPRRAQPKM 105
Score = 158 (60.7 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 28/79 (35%), Positives = 50/79 (63%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N ++ F++FGK+ + +M ++ + R RGFGF+T+ + ++ + E
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCE 169
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 170 IHFHEINNKMVECKKAQPK 188
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 136 (52.9 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLS+ T+ L + F+++G + +C +M + ++ R RGFGF+TYA +D A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 68 MHGREFGDRVISVNKA 83
+ G RV+ +A
Sbjct: 75 RPHKVDG-RVVEPKRA 89
Score = 130 (50.8 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD-AIR 66
+IFVGG+ + E L + F+++GKI +IM +R SG+ RGF F+T+ D ++D I+
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 67 EMH 69
+ H
Sbjct: 166 KYH 168
Score = 81 (33.6 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 27/68 (39%), Positives = 32/68 (47%)
Query: 208 GDRLAGDRYGGS-DRYPVNGYGKERGYERD-VGARAGSDRYASGGPAR-DDGRGYRSRAA 264
G R G YGGS D Y NG+G + GY G GS Y SGG + G GY +
Sbjct: 230 GSR-GGGGYGGSGDGY--NGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGS 286
Query: 265 PYDRPSRG 272
YD + G
Sbjct: 287 -YDSYNNG 293
Score = 56 (24.8 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 26/84 (30%), Positives = 31/84 (36%)
Query: 201 SDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GYERDVGARAGSDRYASGGPARDDG-RG 258
+D + G+ +GGS GYG GY G G Y GGP G RG
Sbjct: 213 NDNFGRGGNFSGRGGFGGSRGG--GGYGGSGDGYN-GFGNDGG---YGGGGPGYSGGSRG 266
Query: 259 YRSRAAPYDRPSRG--DRPSFDRY 280
Y S Y G S+D Y
Sbjct: 267 YGSGGQGYGNQGSGYGGSGSYDSY 290
Score = 51 (23.0 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 211 LAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPAR 253
+ G +GG P G G+ R+ G GS +S G R
Sbjct: 329 MKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGR 371
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 136 (52.9 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLS+ T+ L + F+++G + +C +M + ++ R RGFGF+TYA +D A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 68 MHGREFGDRVISVNKA 83
+ G RV+ +A
Sbjct: 75 RPHKVDG-RVVEPKRA 89
Score = 130 (50.8 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD-AIR 66
+IFVGG+ + E L + F+++GKI +IM +R SG+ RGF F+T+ D ++D I+
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 67 EMH 69
+ H
Sbjct: 166 KYH 168
Score = 81 (33.6 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 27/68 (39%), Positives = 32/68 (47%)
Query: 208 GDRLAGDRYGGS-DRYPVNGYGKERGYERD-VGARAGSDRYASGGPAR-DDGRGYRSRAA 264
G R G YGGS D Y NG+G + GY G GS Y SGG + G GY +
Sbjct: 230 GSR-GGGGYGGSGDGY--NGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGS 286
Query: 265 PYDRPSRG 272
YD + G
Sbjct: 287 -YDSYNNG 293
Score = 56 (24.8 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 26/84 (30%), Positives = 31/84 (36%)
Query: 201 SDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GYERDVGARAGSDRYASGGPARDDG-RG 258
+D + G+ +GGS GYG GY G G Y GGP G RG
Sbjct: 213 NDNFGRGGNFSGRGGFGGSRGG--GGYGGSGDGYN-GFGNDGG---YGGGGPGYSGGSRG 266
Query: 259 YRSRAAPYDRPSRG--DRPSFDRY 280
Y S Y G S+D Y
Sbjct: 267 YGSGGQGYGNQGSGYGGSGSYDSY 290
Score = 51 (23.0 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 211 LAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPAR 253
+ G +GG P G G+ R+ G GS +S G R
Sbjct: 329 MKGGNFGGRSSGPYGGGGQYFAKPRNQGGYGGSSSSSSYGSGR 371
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 136 (52.9 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLS+ T+ L + F+++G + +C +M + ++ R RGFGF+TYA +D A+
Sbjct: 36 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 95
Query: 68 MHGREFGDRVISVNKA 83
+ G RV+ +A
Sbjct: 96 RPHKVDG-RVVEPKRA 110
Score = 130 (50.8 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD-AIR 66
+IFVGG+ + E L + F+++GKI +IM +R SG+ RGF F+T+ D ++D I+
Sbjct: 127 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 186
Query: 67 EMH 69
+ H
Sbjct: 187 KYH 189
Score = 81 (33.6 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 27/68 (39%), Positives = 32/68 (47%)
Query: 208 GDRLAGDRYGGS-DRYPVNGYGKERGYERD-VGARAGSDRYASGGPAR-DDGRGYRSRAA 264
G R G YGGS D Y NG+G + GY G GS Y SGG + G GY +
Sbjct: 251 GSR-GGGGYGGSGDGY--NGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGS 307
Query: 265 PYDRPSRG 272
YD + G
Sbjct: 308 -YDSYNNG 314
Score = 56 (24.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 26/84 (30%), Positives = 31/84 (36%)
Query: 201 SDRYPPAGDRLAGDRYGGSDRYPVNGYGKER-GYERDVGARAGSDRYASGGPARDDG-RG 258
+D + G+ +GGS GYG GY G G Y GGP G RG
Sbjct: 234 NDNFGRGGNFSGRGGFGGSRGG--GGYGGSGDGYN-GFGNDGG---YGGGGPGYSGGSRG 287
Query: 259 YRSRAAPYDRPSRG--DRPSFDRY 280
Y S Y G S+D Y
Sbjct: 288 YGSGGQGYGNQGSGYGGSGSYDSY 311
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 168 (64.2 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 32/87 (36%), Positives = 51/87 (58%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW + L + F +FG+I EC +M + + R RGFGF+T+AD ++D
Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78
Query: 65 IREMH----GREFGDRVISVNKAQPKM 87
+ + H + +V +AQPKM
Sbjct: 79 LGQPHHELDSKTIDPKVAFPRRAQPKM 105
Score = 158 (60.7 bits), Expect = 5.2e-11, P = 5.2e-11
Identities = 28/79 (35%), Positives = 50/79 (63%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N ++ F++FGK+ + +M ++ + R RGFGF+T+ + ++ + E
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCE 169
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 170 IHFHEINNKMVECKKAQPK 188
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 172 (65.6 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 34/87 (39%), Positives = 56/87 (64%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
++IFVGG+S TE+ + F +FG++I+ +M+++D+GRPRGFGF+T+ A++ A+
Sbjct: 194 SKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAALS 253
Query: 67 EMHGREFGDRVISVNKAQPKMGGEVSD 93
E + I V KAQP+ G + D
Sbjct: 254 RP--LEILGKTIEVKKAQPR--GNLRD 276
Score = 163 (62.4 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 28/83 (33%), Positives = 55/83 (66%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
K++ ++F+GGL+W T++ L+ F +FG++ EC +M + +GR RGFGF+T+ D + ++
Sbjct: 107 KEDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNT 166
Query: 64 AIREMHGREFGDRVISVNKAQPK 86
+ + H + G ++I +A P+
Sbjct: 167 VMVKEHYLD-G-KIIDPKRAIPR 187
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 143 (55.4 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I E +M +R++ + RGF FIT+ A+R+
Sbjct: 9 KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRD 68
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 69 MNGKSLDGKAIKVAQA 84
Score = 70 (29.7 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 24/51 (47%), Positives = 28/51 (54%)
Query: 229 KERGYERDV-GARAGSDRY--ASGGPARDDGRGYRSRAAPYD-RPSRGDRP 275
+ RG R + GAR G R + GGPA DDG GY A +D RPSR P
Sbjct: 100 RSRGRSRGLRGARGGGPRRPPSRGGPA-DDG-GY---AGDFDLRPSRAPLP 145
Score = 67 (28.6 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
Identities = 33/94 (35%), Positives = 38/94 (40%)
Query: 188 SKDSKYGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYA 247
S++ Y RD Y S Y A D A D + S R E Y RD G + D
Sbjct: 209 SREGGYSPRDGYSSRDYSSARD--ARD-FAPSPR--------EYTY-RDYGHSSARDECP 256
Query: 248 SGGPARDDGRGYRSRAAPYDRPSRGD-RPSFDRY 280
S G DG G R R D PS G R F+ Y
Sbjct: 257 SRGYGDRDGYGGRDRDYA-DHPSGGSYRDPFESY 289
Score = 57 (25.1 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 24/67 (35%), Positives = 26/67 (38%)
Query: 193 YGSRDRYVSDRYPPAGDRLAGDR-YGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGP 251
YG RD Y R DR D GGS R P YG R AR Y GG
Sbjct: 260 YGDRDGY-GGR-----DRDYADHPSGGSYRDPFESYGDPRSA---APARGPPPSYGGGGG 310
Query: 252 ARDDGRG 258
++ RG
Sbjct: 311 RYEEYRG 317
Score = 51 (23.0 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 28/83 (33%), Positives = 31/83 (37%)
Query: 203 RYPPAGDRLAGDR-YGGS-DRYPVNG-YGKERGYERDVGARAGSDRYASGGPARD-DGRG 258
R PP+ A D Y G D P +RG A R A GPAR G G
Sbjct: 117 RRPPSRGGPADDGGYAGDFDLRPSRAPLPMKRGPPPPRRAGPPPKRAAPSGPARSGSGGG 176
Query: 259 YRSRAAP------YDRPSRGDRP 275
R RA Y+ P R D P
Sbjct: 177 MRGRAPAARGRDGYEGPPRRDPP 199
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 26/83 (31%), Positives = 55/83 (66%)
Query: 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAM 61
A ++E ++F+GGLSW+ T++ L++ F +FG++++C + L+ +GR RGFGF+ + + ++
Sbjct: 92 AQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 151
Query: 62 DDAIREMHGREFGDRVISVNKAQ 84
D + + + +VI +A+
Sbjct: 152 DK-VMDQKEHKLNGKVIDPKRAK 173
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 29/79 (36%), Positives = 50/79 (63%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N T ++ F++FGK+ + +M ++ + R RGFGF+T+ ++ + E
Sbjct: 42 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCE 100
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 101 IHFHEINNKMVECKKAQPK 119
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 30/78 (38%), Positives = 51/78 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNK 82
+ M+G+ R I V++
Sbjct: 64 MMAMNGKSVDGRQIRVDQ 81
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 165 (63.1 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D ++F+GGLSW T L + F RFG++ EC +M + + R RGFGFIT+ D ++D
Sbjct: 42 QDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDK 101
Query: 64 AIR----EMHGREFGDRVISVNKAQPKM 87
+ E+ G++ +V + Q K+
Sbjct: 102 VLNNREHELDGKKIDPKVAFPKRTQAKL 129
Score = 149 (57.5 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLS T ++ F+ +GK+ + +M ++ + R RGFGF+T+ D + D + E
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTF-DSDEVADKVCE 193
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E +++ KAQPK
Sbjct: 194 IHFHEINGKMVECKKAQPK 212
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 166 (63.5 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 30/79 (37%), Positives = 51/79 (64%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N T ++ FD+FGK+ + +M ++ + R RGFGF+T+ + ++ + E
Sbjct: 110 KIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCE 168
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 169 IHFHEINNKMVECKKAQPK 187
Score = 152 (58.6 bits), Expect = 9.8e-10, P = 9.8e-10
Identities = 29/87 (33%), Positives = 51/87 (58%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW T+ L++ F +FG++ E +M + + R RGFGF+T+ D+ +D
Sbjct: 18 DPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKV 77
Query: 65 I----REMHGREFGDRVISVNKAQPKM 87
+ E+ + +V +AQPK+
Sbjct: 78 LAQTRHELDSKTIDPKVAFPRRAQPKL 104
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 153 (58.9 bits), Expect = 8.2e-12, Sum P(2) = 8.2e-12
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD 62
G N +FVG LSWNVTE L F++FG++ +IM ERD+GR RGFG++ + +
Sbjct: 274 GASAN-LFVGNLSWNVTEEWLHQEFEQFGEL-SARIMTERDTGRSRGFGYVEFTNAADAA 331
Query: 63 DAIREMHGREFGDRVISVNKA 83
A M E R I+++ A
Sbjct: 332 KAYEAMKEHEIDGRKINLDYA 352
Score = 117 (46.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+ + +FVG L ++ E + F G ++ ++ + +SGRP+GFG++ Y+ A
Sbjct: 382 ESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKA 441
Query: 65 IREMHGREFGDRVISVNKAQPK 86
E+ G E R I ++ + P+
Sbjct: 442 YNELQGAEIDGRPIRLDFSTPR 463
Score = 47 (21.6 bits), Expect = 8.2e-12, Sum P(2) = 8.2e-12
Identities = 19/52 (36%), Positives = 22/52 (42%)
Query: 226 GYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSRGDRPSF 277
G G RG G R G GG GRG + AP +R +RG P F
Sbjct: 468 GGGGGRGGFGGRGGRGGPRGGGRGGRGGFGGRGGGAGGAP-NR-ARGGIPEF 517
>UNIPROTKB|K7EJ88 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000591830 Uniprot:K7EJ88
Length = 321
Score = 164 (62.8 bits), Expect = 9.1e-12, P = 9.1e-12
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N+IFVGG+ N E +L F +FG + E ++ + + RPRGFGFIT+ D +++D A+
Sbjct: 56 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 115
Query: 67 EMHGREFGDRVISVNKAQPK 86
MH + + + V +A+P+
Sbjct: 116 -MHFHDIMGKKVEVKRAEPR 134
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 166 (63.5 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 33/87 (37%), Positives = 51/87 (58%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW + L + F +FG+I EC +M + + R RGFGFIT+AD ++D
Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKV 78
Query: 65 IREMH----GREFGDRVISVNKAQPKM 87
+ + H + +V +AQPKM
Sbjct: 79 LAQPHHELDSKTIDPKVAFPRRAQPKM 105
Score = 152 (58.6 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 27/79 (34%), Positives = 50/79 (63%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS + ++ F++FGK+ + +M ++ + R RGFGF+T+ + ++ + E
Sbjct: 111 KIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEK-VCE 169
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 170 IHFHEINNKMVECKKAQPK 188
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 150 (57.9 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
IFVG LSW++ + L+ F+ G +I +++ ER + R RG+G++ + ++ + AI+EM
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 69 HGREFGDRVISVNKAQPKMGG 89
G+E R I+ + + K G
Sbjct: 230 QGKEIDGRPINCDMSTSKPAG 250
Score = 97 (39.2 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 16/78 (20%), Positives = 42/78 (53%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+F+G LS+N + F + G+++ +I ++ +P+GFG++ +++ A+ +
Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328
Query: 69 HGREFGDRVISVNKAQPK 86
G +R + ++ + P+
Sbjct: 329 QGEYIDNRPVRLDFSSPR 346
Score = 53 (23.7 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 25/71 (35%), Positives = 30/71 (42%)
Query: 213 GDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYDRPSR- 271
G R GGS + G G RG R G R G+ R GG R G G + AP R
Sbjct: 351 GGR-GGSRGF--GGRGGGRGGNRGFGGRGGA-RGGRGG-FRPSGSG--ANTAPLGRSRNT 403
Query: 272 ----GDRPSFD 278
G + +FD
Sbjct: 404 ASFAGSKKTFD 414
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 167 (63.8 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 28/79 (35%), Positives = 54/79 (68%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGG+ + TE + N F++FG++++ +M+++D+GRPRGFGF+TY + A++ + +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 68 MHGREFGDRVISVNKAQPK 86
+ G + + V +A PK
Sbjct: 308 PYITIHG-KPVEVKRATPK 325
Score = 164 (62.8 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 24/83 (28%), Positives = 55/83 (66%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+++ ++F+GGL+W T+ L + F++FG++++C +M + +GR RGFGF+T+ + + +++
Sbjct: 160 REDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNE 219
Query: 64 AIREMHGREFGDRVISVNKAQPK 86
+ + H ++I +A P+
Sbjct: 220 VMSKEH--HLDGKIIDPKRAIPR 240
>UNIPROTKB|O75526 [details] [associations]
symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
Length = 392
Score = 141 (54.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 25/76 (32%), Positives = 46/76 (60%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ A R+
Sbjct: 9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARD 68
Query: 68 MHGREFGDRVISVNKA 83
M+G+ + I V +A
Sbjct: 69 MNGKSLDGKAIKVAQA 84
Score = 69 (29.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 35/103 (33%), Positives = 42/103 (40%)
Query: 189 KDSKYGSRDRYVSDRY-------PPAGDRLAGDRYGGS---DRYPVNGYGKERGY---ER 235
+D Y SRD Y S Y P G+ D YG S D P+ GY GY +R
Sbjct: 210 RDEGYSSRDGYSSRDYREPRGFAPSPGEYTHRD-YGHSSVRDDCPLRGYSDRDGYGGRDR 268
Query: 236 DVGARAGSDRYASGGPARDDGRGYRS-RAAPYDRPSRGDRPSF 277
D G D + S G R+ Y R A P RG PS+
Sbjct: 269 DYG-----D-HLSRGSHREPFESYGELRGAA---PGRGTPPSY 302
Score = 64 (27.6 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 33/85 (38%), Positives = 35/85 (41%)
Query: 198 RYVSDRYPPAG-DRLAGDRYG-GSDRYPVNGYGKERGYERDVG---ARAGSDRYAS--G- 249
R SDR G DR GD GS R P YG+ RG G + G RY G
Sbjct: 255 RGYSDRDGYGGRDRDYGDHLSRGSHREPFESYGELRGAAPGRGTPPSYGGGGRYEEYRGY 314
Query: 250 GP-ARDDGR-GYRSRAAPYDRPSRG 272
P A GR Y S DR SRG
Sbjct: 315 SPDAYSGGRDSYSSSYGRSDRYSRG 339
Score = 61 (26.5 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 32/99 (32%), Positives = 38/99 (38%)
Query: 193 YGSRDRYVSDRYPPAGDRLAGDRYG-------GSDRYPVNG----YGKERGYERDVGARA 241
YG RDR D R + YG G P G Y + RGY D +
Sbjct: 263 YGGRDRDYGDHLSRGSHREPFESYGELRGAAPGRGTPPSYGGGGRYEEYRGYSPDAYS-G 321
Query: 242 GSDRYASG-GPARDDGRGYRSRAAPYDRPSRGDRPSFDR 279
G D Y+S G + RG R R RP RG S +R
Sbjct: 322 GRDSYSSSYGRSDRYSRG-RHRVG---RPDRGLSLSMER 356
Score = 55 (24.4 bits), Expect = 3.2e-10, Sum P(2) = 3.2e-10
Identities = 20/54 (37%), Positives = 22/54 (40%)
Query: 223 PVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYD-RPSRGDRP 275
P G+ R G G R S G DDG GY A +D RPSR P
Sbjct: 98 PPRSRGRPRFLRGTRGGGGGPRRSPSRGGPDDDG-GY---TADFDLRPSRAPMP 147
Score = 51 (23.0 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 245 RYASGGPARDDGRGYRSRA 263
R A GPAR G G R RA
Sbjct: 163 RAAPSGPARSSGGGMRGRA 181
Score = 46 (21.3 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 23/72 (31%), Positives = 28/72 (38%)
Query: 188 SKDSKYGSRDRYVSDRY----PPAGDRLAGDRY--GGSDRYPVNGYGKERGYERDVGARA 241
S S YG DRY R+ P G L+ +R D Y +G RG G R
Sbjct: 325 SYSSSYGRSDRYSRGRHRVGRPDRGLSLSMERGCPPQRDSYSRSGCRVPRG-----GGRL 379
Query: 242 GSDRYASGGPAR 253
G GG +R
Sbjct: 380 GGRLERGGGRSR 391
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 161 (61.7 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 29/80 (36%), Positives = 53/80 (66%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D ++FVGGLSW+ +++ L++ F +FG++++C I + ++GR +GFGFI + D +++
Sbjct: 61 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEK 120
Query: 64 AIREMHGREFGDRVISVNKA 83
+ + R G RVI KA
Sbjct: 121 VLDQKEHRLDG-RVIDPKKA 139
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 32/86 (37%), Positives = 54/86 (62%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
+++F+GGLSW+V E+ L++AF FG++ E +I ++ SGR RGFGF+ +A+ A
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKD 100
Query: 67 EMHGREFGDRVISVNKAQPKM-GGEV 91
M G+ R + ++ A ++ GG V
Sbjct: 101 AMDGKGLLGRPLRISFALERVRGGPV 126
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 160 (61.4 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 30/81 (37%), Positives = 53/81 (65%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
++E ++FVG LSW+ ++ L+N F +FG++I+C I ++ ++GR RGFGF+ D +++
Sbjct: 69 EEEGKMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEK 128
Query: 64 AIREMHGREFGDRVISVNKAQ 84
+ + R GD VI KA+
Sbjct: 129 ILDQKEHRLNGD-VIDPEKAK 148
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N+IFVGG+ N E +L F +FG + E ++ + + RPRGFGFIT+ D +++D A+
Sbjct: 103 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 162
Query: 67 EMHGREFGDRVISVNKAQPK 86
MH + + + V +A+P+
Sbjct: 163 -MHFHDIMGKKVEVKRAEPR 181
Score = 134 (52.2 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 23/83 (27%), Positives = 46/83 (55%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGGL W+ T+ L + F ++G++++C IM ++ + + RGFGF+ + D + +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 68 ----MHGREFGDRVISVNKAQPK 86
+ GR + + QP+
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPE 83
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 164 (62.8 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N+IFVGG+ N E +L F +FG + E ++ + + RPRGFGFIT+ D +++D A+
Sbjct: 103 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 162
Query: 67 EMHGREFGDRVISVNKAQPK 86
MH + + + V +A+P+
Sbjct: 163 -MHFHDIMGKKVEVKRAEPR 181
Score = 134 (52.2 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 23/83 (27%), Positives = 46/83 (55%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGGL W+ T+ L + F ++G++++C IM ++ + + RGFGF+ + D + +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 68 ----MHGREFGDRVISVNKAQPK 86
+ GR + + QP+
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPE 83
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 163 (62.4 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N TE + ++ F+RFG+ + +M + + RPRGFGF+TY D + + +
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTY-DSEDSVEVVMQ 179
Query: 68 MHGREFGDRVISVNKAQPKMG 88
+ E D+ + V +A PK G
Sbjct: 180 SNFHELSDKRVEVKRAIPKEG 200
Score = 134 (52.2 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++FVGG++ +E L+ F R+G ++E + E+ +G+PRGFGF+ +A+ + A
Sbjct: 4 DRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63
Query: 65 IREMH 69
+R+ H
Sbjct: 64 LRDTH 68
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 162 (62.1 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N T +++ F++FGK+ + +M ++ + R RGFGF+T+ ++ + E
Sbjct: 77 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCE 135
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 136 IHFHEINNKMVECKKAQPK 154
Score = 110 (43.8 bits), Expect = 0.00053, P = 0.00053
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 23 LENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI----REMHGREFGDRVI 78
L F +FG++ EC +M + + R RGFGF+T+ D+ +D + E+ + +V
Sbjct: 3 LREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 62
Query: 79 SVNKAQPKM 87
+AQPKM
Sbjct: 63 FPRRAQPKM 71
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 161 (61.7 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 26/83 (31%), Positives = 55/83 (66%)
Query: 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAM 61
A ++E ++F+GGLSW+ T++ L++ F +FG++++C + L+ +GR RGFGF+ + + ++
Sbjct: 92 AQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 151
Query: 62 DDAIREMHGREFGDRVISVNKAQ 84
D + + + +VI +A+
Sbjct: 152 DK-VMDQKEHKLNGKVIDPKRAK 173
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 164 (62.8 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N+IFVGG+ N E +L F +FG + E ++ + + RPRGFGFIT+ D +++D A+
Sbjct: 112 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 171
Query: 67 EMHGREFGDRVISVNKAQPK 86
MH + + + V +A+P+
Sbjct: 172 -MHFHDIMGKKVEVKRAEPR 190
Score = 145 (56.1 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 27/90 (30%), Positives = 50/90 (55%)
Query: 2 AGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRA 60
AG DE ++FVGGL W+ T+ L + F ++G++++C IM ++ + + RGFGF+ + D
Sbjct: 4 AGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63
Query: 61 MDDAIRE----MHGREFGDRVISVNKAQPK 86
+ + + GR + + QP+
Sbjct: 64 VGTVLASRPHTLDGRNIDPKPCTPRGMQPE 93
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 164 (62.8 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N+IFVGG+ N E +L F +FG + E ++ + + RPRGFGFIT+ D +++D A+
Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Query: 67 EMHGREFGDRVISVNKAQPK 86
MH + + + V +A+P+
Sbjct: 173 -MHFHDIMGKKVEVKRAEPR 191
Score = 145 (56.1 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 27/90 (30%), Positives = 50/90 (55%)
Query: 2 AGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRA 60
AG DE ++FVGGL W+ T+ L + F ++G++++C IM ++ + + RGFGF+ + D
Sbjct: 4 AGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63
Query: 61 MDDAIRE----MHGREFGDRVISVNKAQPK 86
+ + + GR + + QP+
Sbjct: 64 VGTVLASRPHTLDGRNIDPKPCTPRGMQPE 93
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 164 (62.8 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N+IFVGG+ N E +L F +FG + E ++ + + RPRGFGFIT+ D +++D A+
Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Query: 67 EMHGREFGDRVISVNKAQPK 86
MH + + + V +A+P+
Sbjct: 173 -MHFHDIMGKKVEVKRAEPR 191
Score = 145 (56.1 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 27/90 (30%), Positives = 50/90 (55%)
Query: 2 AGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRA 60
AG DE ++FVGGL W+ T+ L + F ++G++++C IM ++ + + RGFGF+ + D
Sbjct: 4 AGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63
Query: 61 MDDAIRE----MHGREFGDRVISVNKAQPK 86
+ + + GR + + QP+
Sbjct: 64 VGTVLASRPHTLDGRNIDPKPCTPRGMQPE 93
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 164 (62.8 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N+IFVGG+ N E +L F +FG + E ++ + + RPRGFGFIT+ D +++D A+
Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Query: 67 EMHGREFGDRVISVNKAQPK 86
MH + + + V +A+P+
Sbjct: 173 -MHFHDIMGKKVEVKRAEPR 191
Score = 142 (55.0 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 26/90 (28%), Positives = 50/90 (55%)
Query: 2 AGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRA 60
+G DE ++FVGGL W+ T+ L + F ++G++++C IM ++ + + RGFGF+ + D
Sbjct: 4 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63
Query: 61 MDDAIRE----MHGREFGDRVISVNKAQPK 86
+ + + GR + + QP+
Sbjct: 64 VGTVLASRPHTLDGRNIDPKPCTPRGMQPE 93
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 135 (52.6 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 2 AGKDE-----NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYA 56
AGK E +IFVGGL ++ + L++ F +FG I + Q++ ++D+G+ RGFGF+ +
Sbjct: 87 AGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFD 146
Query: 57 DRRAMDDAIREMHGREFGDRVISVNKAQPK 86
D + D A+ G +V V KA K
Sbjct: 147 DNDSADKAVVMKFHSICGHKV-EVKKALTK 175
Score = 110 (43.8 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
++FVGGL+ T+ L F+++G++ +C +++ + R R FGF+TY+ D A+
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAM 64
Score = 72 (30.4 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 24/73 (32%), Positives = 31/73 (42%)
Query: 208 GDRLAGDRYGG--SDR-YPVNGYGKERGYERDVGARAG-SDR----YASGGPARDDGRGY 259
G G GG +D Y NG+G GY+ G G SD+ Y +G D G GY
Sbjct: 196 GSGFGGGGRGGYYNDYGYQNNGFGNNSGYDSQNGYGGGYSDQMGGGYGNGNGYSDFGEGY 255
Query: 260 RSRAAPYDRPSRG 272
+A+ Y G
Sbjct: 256 GQQASGYGAMKTG 268
Score = 39 (18.8 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 16/38 (42%), Positives = 16/38 (42%)
Query: 193 YG--SRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYG 228
YG S R S YP G G GGS Y GYG
Sbjct: 269 YGNYSSGRQSSGPYPRGG---GG---GGSGGYGRGGYG 300
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 164 (62.8 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 22 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 81
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 82 NGREFSGRALRVDNAASEKNKE 103
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 161 (61.7 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 31/83 (37%), Positives = 49/83 (59%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+F+GGLSW + L + F +FG+I EC +M + + R RGFGF+T+AD ++D + +
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 69 H----GREFGDRVISVNKAQPKM 87
H + +V +AQPKM
Sbjct: 61 HHELDSKTIDPKVAFPRRAQPKM 83
Score = 158 (60.7 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 28/79 (35%), Positives = 50/79 (63%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N ++ F++FGK+ + +M ++ + R RGFGF+T+ + ++ + E
Sbjct: 89 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCE 147
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 148 IHFHEINNKMVECKKAQPK 166
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 158 (60.7 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 28/79 (35%), Positives = 50/79 (63%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N ++ F++FGK+ + +M ++ + R RGFGF+T+ + ++ + E
Sbjct: 50 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCE 108
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 109 IHFHEINNKMVECKKAQPK 127
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 162 (62.1 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N T +++ F++FGK+ + +M ++ + R RGFGF+T+ ++ + E
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCE 168
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 169 IHFHEINNKMVECKKAQPK 187
Score = 160 (61.4 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 31/87 (35%), Positives = 50/87 (57%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW T+ L F +FG++ EC +M + + R RGFGF+T+ D+ +D
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 65 I----REMHGREFGDRVISVNKAQPKM 87
+ E+ + +V +AQPKM
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKM 104
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 162 (62.1 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N T +++ F++FGK+ + +M ++ + R RGFGF+T+ ++ + E
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCE 168
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 169 IHFHEINNKMVECKKAQPK 187
Score = 160 (61.4 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 31/87 (35%), Positives = 50/87 (57%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW T+ L F +FG++ EC +M + + R RGFGF+T+ D+ +D
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 65 I----REMHGREFGDRVISVNKAQPKM 87
+ E+ + +V +AQPKM
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKM 104
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 162 (62.1 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N T +++ F++FGK+ + +M ++ + R RGFGF+T+ ++ + E
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCE 168
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 169 IHFHEINNKMVECKKAQPK 187
Score = 160 (61.4 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 31/87 (35%), Positives = 50/87 (57%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW T+ L F +FG++ EC +M + + R RGFGF+T+ D+ +D
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 65 I----REMHGREFGDRVISVNKAQPKM 87
+ E+ + +V +AQPKM
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKM 104
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 161 (61.7 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 29/79 (36%), Positives = 50/79 (63%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N T ++ F++FGK+ + +M ++ + R RGFGF+T+ ++ + E
Sbjct: 77 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCE 135
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 136 IHFHEINNKMVECKKAQPK 154
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 163 (62.4 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 29/88 (32%), Positives = 53/88 (60%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D+ ++FVGG+SW E +L F +G++ + +M ++ +GRPRGFGF+ ++D +D
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
Query: 65 IREMHGREFGDRVISVNKAQPKMGGEVS 92
++E H + R + V +A + +VS
Sbjct: 64 LQEKHSID--TREVDVKRAMSREEQQVS 89
Score = 131 (51.2 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGL +T+ + F+ +G + + IM ++ + RPRGFGF+++ A+D + +
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
Query: 68 MHGREFGDRVISVNKAQPK 86
+ + + V +A PK
Sbjct: 171 TF-HDLSGKQVEVKRALPK 188
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 159 (61.0 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 28/79 (35%), Positives = 49/79 (62%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
RI+VG L W+V +LE F GK+++ +++ +R++GR RGFGF+ ++ ++ AI
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 68 MHGREFGDRVISVNKAQPK 86
+ G+ R I VN A+ +
Sbjct: 268 LDGQNLEGRAIKVNVAEER 286
Score = 128 (50.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+E ++FVG L ++V + L F++ G + +++ RD+ + RGFGF+T + + A
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 65 IREMHGREFGDRVISVNKAQPK 86
+ + + E R ++VN+A P+
Sbjct: 171 VEKFNSFEVNGRRLTVNRAAPR 192
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 161 (61.7 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 29/79 (36%), Positives = 50/79 (63%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N T ++ F++FGK+ + +M ++ + R RGFGF+T+ ++ + E
Sbjct: 90 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCE 148
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 149 IHFHEINNKMVECKKAQPK 167
Score = 158 (60.7 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI-- 65
++F+GGLSW T+ L F +FG++ EC +M + + R RGFGF+T+ D+ +D +
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 60
Query: 66 --REMHGREFGDRVISVNKAQPKM 87
E+ + +V +AQPKM
Sbjct: 61 SRHELDSKTIDPKVAFPRRAQPKM 84
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 163 (62.4 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 161 (61.7 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 29/79 (36%), Positives = 50/79 (63%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N T ++ F++FGK+ + +M ++ + R RGFGF+T+ ++ + E
Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCE 168
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 169 IHFHEINNKMVECKKAQPK 187
Score = 160 (61.4 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 31/87 (35%), Positives = 50/87 (57%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW T+ L F +FG++ EC +M + + R RGFGF+T+ D+ +D
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 65 I----REMHGREFGDRVISVNKAQPKM 87
+ E+ + +V +AQPKM
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKM 104
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 159 (61.0 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 26/83 (31%), Positives = 54/83 (65%)
Query: 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAM 61
A ++E ++F+GGLSW+ T++ L++ F +FG +++C + L+ +GR RGFGF+ + + ++
Sbjct: 90 AQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESV 149
Query: 62 DDAIREMHGREFGDRVISVNKAQ 84
D + + + +VI +A+
Sbjct: 150 DK-VMDQKEHKLNGKVIDPKRAK 171
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+E +F+GGL++N E+ LE+ F FG I E ++ +R++ R RGF FIT+ + DA
Sbjct: 4 EEGMLFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+R M+G+ R I V+ A
Sbjct: 64 MRPMNGKSLDGRQIRVDHA 82
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
R++VG L +N+TE L F+ FGKI +M + D+GR +G+GFIT++D A+ +
Sbjct: 14 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 73
Query: 68 MHGREFGDRVISVNKAQPKMGG 89
++G E R + V ++ G
Sbjct: 74 LNGFELAGRPMRVGHVTERLDG 95
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
R++VG L +N+TE L F+ FGKI +M + D+GR +G+GFIT++D A+ +
Sbjct: 39 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 98
Query: 68 MHGREFGDRVISVNKAQPKMGG 89
++G E R + V ++ G
Sbjct: 99 LNGFELAGRPMRVGHVTERLDG 120
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW + L + F +FG+I EC +M + + R RGFGF+T+AD ++D
Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78
Query: 65 IREMH 69
+ + H
Sbjct: 79 LGQPH 83
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
++VG + TE +L N F G+I +I+ +R++GRPRGF FI +A+ + A+ +M
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 69 HGREFGDRVISVNKA 83
+G EF R + VN A
Sbjct: 67 NGAEFNGRPLRVNLA 81
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 141 (54.7 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 27/82 (32%), Positives = 48/82 (58%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D+ ++FVGGLSW TE++L + F ++G+I + + +GR RGF FI + + A+D
Sbjct: 54 DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAID-- 111
Query: 65 IREMHGREFGDRVISVNKAQPK 86
++ + + +I+ K PK
Sbjct: 112 --KVSAAD--EHIINSKKVDPK 129
Score = 122 (48.0 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGL+ +++ +++ F +FG I+E ++ ++ + +GF FIT+ + + D ++
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
Query: 68 MHGREFGDRVISVNKAQPK 86
+ G V V +A PK
Sbjct: 197 PKQKIAGKEV-DVKRATPK 214
Score = 63 (27.2 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 208 GDRLAGDRYGGSDRYPVNGYGKERGYERDV--GARAGSDRYASGGPARDDG 256
GD AG Y G D Y +GYG G+E + G G+ GGP G
Sbjct: 270 GDYYAGGYYNGYD-YGYDGYGYGGGFEGNGYGGGGGGNMGGGRGGPRGGGG 319
Score = 54 (24.1 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 23/69 (33%), Positives = 28/69 (40%)
Query: 193 YGSRDRYVSDRYPPAGDRLA-GDRYGGSDRYPVNGYGK--ERGYERDVGARAGSDRYASG 249
YG R Y ++++ G G YGG Y GYG GY G G D Y G
Sbjct: 238 YGGRGGY-NNQWDGQGSYGGYGGGYGG---YGAGGYGDYYAGGYYN--GYDYGYDGYGYG 291
Query: 250 GPARDDGRG 258
G +G G
Sbjct: 292 GGFEGNGYG 300
Score = 40 (19.1 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 13/46 (28%), Positives = 15/46 (32%)
Query: 206 PAGDRLAGDRYG--GSDRYPVNGYGKERGYERDVGARAGSDRYASG 249
P + G R G G R GYG GY + Y G
Sbjct: 215 PENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGG 260
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 128 (50.1 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD-AIR 66
++FVGG+ + E L F +FGKI E IM E++S + RGF FIT+ D A+D I+
Sbjct: 130 KMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQ 189
Query: 67 EMH 69
+ H
Sbjct: 190 KYH 192
Score = 125 (49.1 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 21/58 (36%), Positives = 39/58 (67%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
++F+GGLS+ T+ L F+++G + +C +M + ++ R RGFGF+TY+ +D A+
Sbjct: 39 KLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAM 96
Score = 85 (35.0 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 25/64 (39%), Positives = 28/64 (43%)
Query: 204 YPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDR-YASGGPARDDGRGYRSR 262
Y G R G YGG D Y NGYG G G G +R Y SGG G GY ++
Sbjct: 248 YGGGGGRGGGGGYGGGDGY--NGYGGGNGGYGGGGPNYGGNRGYGSGGGGGGGG-GYGNQ 304
Query: 263 AAPY 266
Y
Sbjct: 305 GGGY 308
Score = 50 (22.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 18/60 (30%), Positives = 22/60 (36%)
Query: 208 GDRLAGDRYGGSDRYPVNGYGKERGYER-DVGARAGSDRYASGGPARDDGRGYRSRAAPY 266
G G +GG Y N +G + G G + Y GG G G RS PY
Sbjct: 326 GGNFGGGNFGGGGDY--NDFGNYNNQSSSNYGPMKGGN-YGGGG-----GGGGRSGGGPY 377
Score = 50 (22.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 208 GDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAPYD 267
G++ G GG D Y NG G G G G + GG D G Y ++++
Sbjct: 302 GNQGGGYGGGGYDNYNNNG-GGGGG-----GGNFGGGNFGGGGDYNDFGN-YNNQSSSNY 354
Query: 268 RPSRG 272
P +G
Sbjct: 355 GPMKG 359
Score = 48 (22.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 20/70 (28%), Positives = 23/70 (32%)
Query: 193 YGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERG-YERDVGARAGS--DRYASG 249
YG D Y G G YGG+ Y G G G Y G G D Y +
Sbjct: 260 YGGGDGYNGYGGGNGGYGGGGPNYGGNRGYGSGGGGGGGGGYGNQGGGYGGGGYDNYNNN 319
Query: 250 GPARDDGRGY 259
G G +
Sbjct: 320 GGGGGGGGNF 329
Score = 44 (20.5 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 20/67 (29%), Positives = 24/67 (35%)
Query: 193 YGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPA 252
+G+ + S Y P G GG R YG GY G G Y GG +
Sbjct: 343 FGNYNNQSSSNYGPMKGGNYGGGGGGGGRSGGGPYGG--GYG---GGSGGGGGY--GGGS 395
Query: 253 RDDGRGY 259
G GY
Sbjct: 396 GGGGGGY 402
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 164 (62.8 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>TAIR|locus:2055951 [details] [associations]
symbol:AT2G22100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007232
HSSP:Q14103 ProtClustDB:CLSN2914947 IPI:IPI00529413 PIR:A84609
RefSeq:NP_565526.1 UniGene:At.39482 ProteinModelPortal:Q9SHZ5
SMR:Q9SHZ5 EnsemblPlants:AT2G22100.1 GeneID:816745
KEGG:ath:AT2G22100 TAIR:At2g22100 InParanoid:Q9SHZ5 OMA:VFESADR
PhylomeDB:Q9SHZ5 ArrayExpress:Q9SHZ5 Genevestigator:Q9SHZ5
Uniprot:Q9SHZ5
Length = 382
Score = 161 (61.7 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 29/85 (34%), Positives = 52/85 (61%)
Query: 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
+ IFV GL W+ T L+ AF+ +G+I EC +++++D+GR +GFGF+ + R+ A+
Sbjct: 162 QRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAAL 221
Query: 66 REMHGREFGDRVISVNKAQPKMGGE 90
+ R + +R +S A+P G+
Sbjct: 222 KNPEKRMY-NRTVSCLPARPFNSGK 245
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 163 (62.4 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 24/77 (31%), Positives = 51/77 (66%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLSW+ T++ L++ F +FG++++C + L+ +GR RGFGF+ + + ++D + +
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK-VMD 60
Query: 68 MHGREFGDRVISVNKAQ 84
+ +VI +A+
Sbjct: 61 QKEHKLNGKVIDPKRAK 77
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 160 (61.4 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 31/87 (35%), Positives = 50/87 (57%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW T+ L F +FG++ EC +M + + R RGFGF+T+ D+ +D
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 65 I----REMHGREFGDRVISVNKAQPKM 87
+ E+ + +V +AQPKM
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKM 104
Score = 153 (58.9 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 28/79 (35%), Positives = 49/79 (62%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N T ++ F++F K+ + +M ++ + R RGFGF+T+ ++ + E
Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCE 168
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 169 IHFHEINNKMVECKKAQPK 187
>TAIR|locus:2047685 [details] [associations]
symbol:AT2G19380 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003604 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00076 PROSITE:PS50102 SMART:SM00355
SMART:SM00360 SMART:SM00451 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 EMBL:AC003058 eggNOG:NOG253936 InterPro:IPR014898
Pfam:PF08790 HSSP:Q60900 IPI:IPI00545777 PIR:T01286
RefSeq:NP_565450.1 UniGene:At.50083 ProteinModelPortal:O64571
SMR:O64571 PRIDE:O64571 EnsemblPlants:AT2G19380.1 GeneID:816456
KEGG:ath:AT2G19380 TAIR:At2g19380 HOGENOM:HOG000114996
InParanoid:O64571 OMA:ESADRDI PhylomeDB:O64571
ProtClustDB:CLSN2914947 ArrayExpress:O64571 Genevestigator:O64571
Uniprot:O64571
Length = 613
Score = 164 (62.8 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 27/83 (32%), Positives = 52/83 (62%)
Query: 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
+ IFV G W+ T+ L+ AF+ +G+I EC +++++D+GR +G+GF+ + R+ +A+
Sbjct: 407 QRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREAL 466
Query: 66 REMHGREFGDRVISVNKAQPKMG 88
+ R + +R++ N A K G
Sbjct: 467 KRPEKRMY-NRIVVCNLASEKPG 488
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 164 (62.8 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 164 (62.8 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 164 (62.8 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 164 (62.8 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 163 (62.4 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 163 (62.4 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 162 (62.1 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 26 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 85
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 86 NGREFSGRALRVDNAASEKNKE 107
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 136 (52.9 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLS+ T+ L + F+++G + +C +M + ++ R RGFGF+TYA +D A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 68 MHGREFGDRVISVNKA 83
+ G RV+ +A
Sbjct: 75 RPHKVDG-RVVEPKRA 89
Score = 130 (50.8 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD-AIR 66
+IFVGG+ + E L + F+++GKI +IM +R SG+ RGF F+T+ D ++D I+
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 67 EMH 69
+ H
Sbjct: 166 KYH 168
Score = 64 (27.6 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 19/43 (44%), Positives = 22/43 (51%)
Query: 208 GDRLAGDRYGGS-DRYPVNGYGKERGYERDVGARAGSDRYASG 249
G R G YGGS D Y NG+G + GY G + S Y SG
Sbjct: 230 GSR-GGGGYGGSGDGY--NGFGNDGGY----GGSSSSSSYGSG 265
Score = 47 (21.6 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 19/58 (32%), Positives = 24/58 (41%)
Query: 213 GDRYGGSDRYPVNGYGKERGY---ERDVGARAGS-DRYASGGPARDDGRGYRSRAAPY 266
G +GG+D + G RG R G GS D Y G D G G S ++ Y
Sbjct: 207 GGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGY--NGFGNDGGYGGSSSSSSY 262
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 163 (62.4 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 163 (62.4 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 163 (62.4 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 163 (62.4 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 163 (62.4 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 163 (62.4 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 138 (53.6 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLS+ TE L N ++++GK+ +C +M + S R RGFGF+T++ +D A+
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAA 69
Query: 68 MHGREFGDRVISVNKA 83
RV+ +A
Sbjct: 70 -RPHSIDGRVVEPKRA 84
Score = 124 (48.7 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGG+ + E L + F+ +GKI +I+ +R SG+ RGFGF+T+ D +D + +
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDKIVLQ 159
Query: 68 MHGREFGDRVISVNKA 83
+ + G V KA
Sbjct: 160 KYHTKNGHNA-EVRKA 174
Score = 64 (27.6 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 19/51 (37%), Positives = 21/51 (41%)
Query: 213 GDRYGGS-DRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSR 262
G YGG D Y YG R++G G Y GG G G RSR
Sbjct: 267 GGGYGGGYDNYGGGNYG------RNMGGPYGGGNYGPGGSGGSGGYGGRSR 311
Score = 61 (26.5 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 21/67 (31%), Positives = 24/67 (35%)
Query: 217 GGSDRYPVNGYGKERGYERDVGARAGSDRYAS--GGPARDDGRGYRSRAAP-YDRPSRGD 273
GGSD GYG RG+ G R + G P GRG P Y G
Sbjct: 216 GGSD-----GYGSGRGFGDGYNGYGGGPRSGNFGGSPGYGGGRGGYGGGGPGYGNQGGGY 270
Query: 274 RPSFDRY 280
+D Y
Sbjct: 271 GGGYDNY 277
Score = 43 (20.2 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 240 RAGSDRYASGGPARDDGRGY 259
R GSD Y SG D GY
Sbjct: 215 RGGSDGYGSGRGFGDGYNGY 234
Score = 38 (18.4 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 17/53 (32%), Positives = 19/53 (35%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRY 246
G D Y Y G + G YGG + Y G G GY G RY
Sbjct: 272 GGYDNYGGGNY---GRNMGGP-YGGGN-YGPGGSGGSGGY-------GGRSRY 312
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 163 (62.4 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 163 (62.4 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 163 (62.4 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 32/84 (38%), Positives = 54/84 (64%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKAQPKMG 88
+ M+G+ RV+S + +MG
Sbjct: 64 MMAMNGK-VRIRVLSRSPVS-RMG 85
>ZFIN|ZDB-GENE-050306-36 [details] [associations]
symbol:zgc:110796 "zgc:110796" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050306-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG107480 KO:K14411
GeneTree:ENSGT00390000002308 EMBL:CABZ01074485 EMBL:BC090772
IPI:IPI00555445 RefSeq:NP_001013351.1 UniGene:Dr.87721 SMR:Q5CZN9
STRING:Q5CZN9 Ensembl:ENSDART00000060532 GeneID:503755
KEGG:dre:503755 eggNOG:NOG285314 InParanoid:Q5CZN9 OMA:MEADGTQ
OrthoDB:EOG4GHZQT NextBio:20866299 Uniprot:Q5CZN9
Length = 94
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW T+ L+ F +FG++ EC +M + + R RGFGF+TY D+ +D
Sbjct: 20 DPCKMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYVDQTGVDKV 79
Query: 65 IREMHGREFGDRVIS 79
+ + + E + +S
Sbjct: 80 LAQ-NRHELDSKTVS 93
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 139 (54.0 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLS+ TE L N ++++GK+ +C +M + S R RGFGF+T++ +D A+
Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 68 MHGREFGDRVISVNKA 83
RV+ +A
Sbjct: 70 -RPHSIDGRVVEPKRA 84
Score = 128 (50.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGG+ + E L + F+ +GKI +I+ +R SG+ RGFGF+T+ D +D + +
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 68 MH 69
+
Sbjct: 161 KY 162
Score = 64 (27.6 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 26/68 (38%), Positives = 28/68 (41%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNG-YGKERGYERDVGARAGSDRYASGGPA 252
GS R SD Y R GD Y G P G +G GY G R G Y GGP
Sbjct: 212 GSNFRGGSDGY--GSGRGFGDGYNGYGGGPGGGNFGGSPGYG---GGRGG---YGGGGPG 263
Query: 253 R-DDGRGY 259
+ G GY
Sbjct: 264 YGNQGGGY 271
Score = 62 (26.9 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 23/73 (31%), Positives = 29/73 (39%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER----GYERDVGARAGSDRYASG 249
G D Y Y G D +G ++ P N YG + G R++G G Y G
Sbjct: 273 GGYDNYGGGNY---GSGNYND-FGNYNQQPSN-YGPMKSGNFGGSRNMGGPYGGGNYGPG 327
Query: 250 GPARDDGRGYRSR 262
G G G RSR
Sbjct: 328 GSGGSGGYGGRSR 340
Score = 47 (21.6 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 226 GYGKERGYERDVGA------RAGSDRYASGGPARDDGRGY 259
G+G RG + G R GSD Y SG D GY
Sbjct: 196 GFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 235
Score = 44 (20.5 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 217 GGSDRYPVNGYGKERGYERDVGARAGSDRYASGG 250
GG Y G G GY+ G GS Y G
Sbjct: 259 GGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG 292
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 139 (54.0 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLS+ TE L N ++++GK+ +C +M + S R RGFGF+T++ +D A+
Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69
Query: 68 MHGREFGDRVISVNKA 83
RV+ +A
Sbjct: 70 -RPHSIDGRVVEPKRA 84
Score = 124 (48.7 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGG+ + E L + F +GKI +I+ +R SG+ RGFGF+T+ D +D + +
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 68 MH 69
+
Sbjct: 161 KY 162
Score = 64 (27.6 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 26/68 (38%), Positives = 28/68 (41%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNG-YGKERGYERDVGARAGSDRYASGGPA 252
GS R SD Y R GD Y G P G +G GY G R G Y GGP
Sbjct: 212 GSNFRGGSDGY--GSGRGFGDGYNGYGGGPGGGNFGGSPGYG---GGRGG---YGGGGPG 263
Query: 253 R-DDGRGY 259
+ G GY
Sbjct: 264 YGNQGGGY 271
Score = 62 (26.9 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 23/73 (31%), Positives = 29/73 (39%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER----GYERDVGARAGSDRYASG 249
G D Y Y G D +G ++ P N YG + G R++G G Y G
Sbjct: 273 GGYDNYGGGNY---GSGNYND-FGNYNQQPSN-YGPMKSGNFGGSRNMGGPYGGGNYGPG 327
Query: 250 GPARDDGRGYRSR 262
G G G RSR
Sbjct: 328 GSGGSGGYGGRSR 340
Score = 47 (21.6 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 226 GYGKERGYERDVGA------RAGSDRYASGGPARDDGRGY 259
G+G RG + G R GSD Y SG D GY
Sbjct: 196 GFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 235
Score = 44 (20.5 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 217 GGSDRYPVNGYGKERGYERDVGARAGSDRYASGG 250
GG Y G G GY+ G GS Y G
Sbjct: 259 GGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG 292
>ASPGD|ASPL0000005578 [details] [associations]
symbol:AN6676 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001301 GO:GO:0030529 EMBL:AACD01000111 eggNOG:NOG297815
OMA:GIHPRLT OrthoDB:EOG4KPXM5 RefSeq:XP_664280.1
ProteinModelPortal:Q5AYF4 STRING:Q5AYF4
EnsemblFungi:CADANIAT00007461 GeneID:2870465 KEGG:ani:AN6676.2
HOGENOM:HOG000180680 Uniprot:Q5AYF4
Length = 307
Score = 116 (45.9 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
+ +FV G+ +TE + F+++G + C IM++ + RGFGF+ D A
Sbjct: 67 SNLFVTGIHPRLTESDISRLFEKYGDVESCSIMVDPHTKESRGFGFVNMVTAEQADAAKE 126
Query: 67 EMHGREFGDRVISVNKAQ 84
+ G R +S+ KA+
Sbjct: 127 GLQGEVIEGRTLSIEKAR 144
Score = 94 (38.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 33/87 (37%), Positives = 35/87 (40%)
Query: 194 GSRDRYVSDR--YPPAGDRLAGDRYGGSDRYPVNGYGKERGYE----RDVGARAGSDRYA 247
G DRY R Y R GD Y G RY + Y R Y RD G R D YA
Sbjct: 170 GRGDRYDDRRGGYGGGNWRRGGDDYRGYGRY--DSYSDRRDYGGRDYRDYGRRDYRDDYA 227
Query: 248 SGGPARDDGRGYRSRAAPYDRPSRGDR 274
GGP GYR A Y R +R
Sbjct: 228 -GGPGGSGSGGYRGGADRYASGGREER 253
Score = 85 (35.0 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 41/99 (41%), Positives = 44/99 (44%)
Query: 193 YGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGP- 251
YG D Y SDR G R D YG D Y + Y G G R G+DRYASGG
Sbjct: 197 YGRYDSY-SDRRDYGG-RDYRD-YGRRD-YR-DDYAGGPGGSGSGGYRGGADRYASGGRE 251
Query: 252 ---ARDDGRGYR--SRAAPYDR----PSRGD-RPSFDRY 280
RD+ R R R YDR PS G PS D Y
Sbjct: 252 ERYGRDERRDDRRDERRGYYDRDANPPSYGHGAPSRDPY 290
Score = 44 (20.5 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 24/66 (36%), Positives = 27/66 (40%)
Query: 194 GSRDRYVS----DRY--PPAGDRLAGDRYGGSDRY---PVNGYGK-ERG-YE-RDVGARA 241
G DRY S +RY D +R G DR P G+G R Y R R
Sbjct: 240 GGADRYASGGREERYGRDERRDDRRDERRGYYDRDANPPSYGHGAPSRDPYPGRSYEPRG 299
Query: 242 GSDRYA 247
G DRYA
Sbjct: 300 GEDRYA 305
Score = 43 (20.2 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 19/55 (34%), Positives = 21/55 (38%)
Query: 223 PVNGYGKERGYERD-VGARAGSDRYASGGPAR--DDGRGYRSRAAPYDRPSRGDR 274
P +G RG D R G Y G R DD RGY + DR G R
Sbjct: 160 PKREFGGRRGGRGDRYDDRRGG--YGGGNWRRGGDDYRGYGRYDSYSDRRDYGGR 212
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 159 (61.0 bits), Expect = 4.8e-11, P = 4.8e-11
Identities = 30/87 (34%), Positives = 50/87 (57%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW + L + F R+G I E +M + + R RGFGF+T++D ++D
Sbjct: 27 DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKV 86
Query: 65 I----REMHGREFGDRVISVNKAQPKM 87
+ E+ G++ +V +A PKM
Sbjct: 87 LTQGTHELDGKKVDPKVAFPRRAHPKM 113
Score = 154 (59.3 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 29/79 (36%), Positives = 49/79 (62%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS T +++ F++FG I + +M ++ + R RGFGF+T+ +D + E
Sbjct: 119 KIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK-VCE 177
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 178 IHFHEINNKMVECKKAQPK 196
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 155 (59.6 bits), Expect = 4.8e-11, P = 4.8e-11
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
R++VG L +N+TE L F+ FGKI +M + D+GR +G+GFIT++D A+ +
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 153
Query: 68 MHGREFGDRVISVNKAQPKMGG 89
++G E R + V ++ G
Sbjct: 154 LNGFELAGRPMRVGHVTERLDG 175
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 139 (54.0 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLS+ TE L N ++++GK+ +C +M + S R RGFGF+T++ +D A+
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 68 MHGREFGDRVISVNKA 83
RV+ +A
Sbjct: 81 -RPHSIDGRVVEPKRA 95
Score = 128 (50.1 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGG+ + E L + F+ +GKI +I+ +R SG+ RGFGF+T+ D +D + +
Sbjct: 112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 171
Query: 68 MH 69
+
Sbjct: 172 KY 173
Score = 62 (26.9 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 206 PAGDRLAGDR--YGGSDRYPVNGYGKER----GYERDVGARAGSDRYASGGPARDDGRGY 259
P G+ +G+ +G ++ P N YG + G R++G G Y GG G G
Sbjct: 250 PGGNYGSGNYNDFGNYNQQPSN-YGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGG 308
Query: 260 RSR 262
RSR
Sbjct: 309 RSR 311
Score = 48 (22.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 19/61 (31%), Positives = 22/61 (36%)
Query: 226 GYGKERGYERDVGA------RAGSDRYASGGPARDDGRGYRSRAAPYDRPSRGDRPSFDR 279
G+G RG + G R GSD Y SG D GY P G+ F
Sbjct: 207 GFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGG--GPGGNYGSGNYNDFGN 264
Query: 280 Y 280
Y
Sbjct: 265 Y 265
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 163 (62.4 bits), Expect = 5.0e-11, P = 5.0e-11
Identities = 27/82 (32%), Positives = 50/82 (60%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R +
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 69 HGREFGDRVISVNKAQPKMGGE 90
+GREF R + V+ A + E
Sbjct: 78 NGREFSGRALRVDNAASEKNKE 99
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 139 (54.0 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLS+ TE L N ++++GK+ +C +M + S R RGFGF+T++ +D A+
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 68 MHGREFGDRVISVNKA 83
RV+ +A
Sbjct: 81 -RPHSIDGRVVEPKRA 95
Score = 128 (50.1 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGG+ + E L + F+ +GKI +I+ +R SG+ RGFGF+T+ D +D + +
Sbjct: 112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 171
Query: 68 MH 69
+
Sbjct: 172 KY 173
Score = 64 (27.6 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 26/68 (38%), Positives = 28/68 (41%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNG-YGKERGYERDVGARAGSDRYASGGPA 252
GS R SD Y R GD Y G P G +G GY G R G Y GGP
Sbjct: 223 GSNFRGGSDGY--GSGRGFGDGYNGYGGGPGGGNFGGSPGYG---GGRGG---YGGGGPG 274
Query: 253 R-DDGRGY 259
+ G GY
Sbjct: 275 YGNQGGGY 282
Score = 62 (26.9 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 23/73 (31%), Positives = 29/73 (39%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER----GYERDVGARAGSDRYASG 249
G D Y Y G D +G ++ P N YG + G R++G G Y G
Sbjct: 284 GGYDNYGGGNY---GSGNYND-FGNYNQQPSN-YGPMKSGNFGGSRNMGGPYGGGNYGPG 338
Query: 250 GPARDDGRGYRSR 262
G G G RSR
Sbjct: 339 GSGGSGGYGGRSR 351
Score = 47 (21.6 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 226 GYGKERGYERDVGA------RAGSDRYASGGPARDDGRGY 259
G+G RG + G R GSD Y SG D GY
Sbjct: 207 GFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 246
Score = 44 (20.5 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 217 GGSDRYPVNGYGKERGYERDVGARAGSDRYASGG 250
GG Y G G GY+ G GS Y G
Sbjct: 270 GGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG 303
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 139 (54.0 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLS+ TE L N ++++GK+ +C +M + S R RGFGF+T++ +D A+
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 68 MHGREFGDRVISVNKA 83
RV+ +A
Sbjct: 82 -RPHSIDGRVVEPKRA 96
Score = 134 (52.2 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGG+ + E L + F+ +GKI +I+ +R SG+ RGFGF+T+ D +D + +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 68 MH 69
H
Sbjct: 173 KH 174
Score = 64 (27.6 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 26/68 (38%), Positives = 28/68 (41%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNG-YGKERGYERDVGARAGSDRYASGGPA 252
GS R SD Y R GD Y G P G +G GY G R G Y GGP
Sbjct: 224 GSNFRGGSDGY--GSGRGFGDGYNGYGGGPGGGNFGGSPGYG---GGRGG---YGGGGPG 275
Query: 253 R-DDGRGY 259
+ G GY
Sbjct: 276 YGNQGGGY 283
Score = 62 (26.9 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 23/73 (31%), Positives = 29/73 (39%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER----GYERDVGARAGSDRYASG 249
G D Y Y G D +G ++ P N YG + G R++G G Y G
Sbjct: 285 GGYDNYGGGNY---GSGNYND-FGNYNQQPSN-YGPMKSGNFGGSRNMGGPYGGGNYGPG 339
Query: 250 GPARDDGRGYRSR 262
G G G RSR
Sbjct: 340 GSGGSGGYGGRSR 352
Score = 47 (21.6 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 226 GYGKERGYERDVGA------RAGSDRYASGGPARDDGRGY 259
G+G RG + G R GSD Y SG D GY
Sbjct: 208 GFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 247
Score = 44 (20.5 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 217 GGSDRYPVNGYGKERGYERDVGARAGSDRYASGG 250
GG Y G G GY+ G GS Y G
Sbjct: 271 GGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG 304
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 139 (54.0 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLS+ TE L N ++++GK+ +C +M + S R RGFGF+T++ +D A+
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 68 MHGREFGDRVISVNKA 83
RV+ +A
Sbjct: 82 -RPHSIDGRVVEPKRA 96
Score = 128 (50.1 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGG+ + E L + F+ +GKI +I+ +R SG+ RGFGF+T+ D +D + +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 68 MH 69
+
Sbjct: 173 KY 174
Score = 64 (27.6 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 26/68 (38%), Positives = 28/68 (41%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNG-YGKERGYERDVGARAGSDRYASGGPA 252
GS R SD Y R GD Y G P G +G GY G R G Y GGP
Sbjct: 224 GSNFRGGSDGY--GSGRGFGDGYNGYGGGPGGGNFGGSPGYG---GGRGG---YGGGGPG 275
Query: 253 R-DDGRGY 259
+ G GY
Sbjct: 276 YGNQGGGY 283
Score = 62 (26.9 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 23/73 (31%), Positives = 29/73 (39%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER----GYERDVGARAGSDRYASG 249
G D Y Y G D +G ++ P N YG + G R++G G Y G
Sbjct: 285 GGYDNYGGGNY---GSGNYND-FGNYNQQPSN-YGPMKSGNFGGSRNMGGPYGGGNYGPG 339
Query: 250 GPARDDGRGYRSR 262
G G G RSR
Sbjct: 340 GSGGSGGYGGRSR 352
Score = 47 (21.6 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 226 GYGKERGYERDVGA------RAGSDRYASGGPARDDGRGY 259
G+G RG + G R GSD Y SG D GY
Sbjct: 208 GFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 247
Score = 44 (20.5 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 217 GGSDRYPVNGYGKERGYERDVGARAGSDRYASGG 250
GG Y G G GY+ G GS Y G
Sbjct: 271 GGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG 304
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 139 (54.0 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLS+ TE L N ++++GK+ +C +M + S R RGFGF+T++ +D A+
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 68 MHGREFGDRVISVNKA 83
RV+ +A
Sbjct: 82 -RPHSIDGRVVEPKRA 96
Score = 128 (50.1 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGG+ + E L + F+ +GKI +I+ +R SG+ RGFGF+T+ D +D + +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 68 MH 69
+
Sbjct: 173 KY 174
Score = 64 (27.6 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 26/68 (38%), Positives = 28/68 (41%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNG-YGKERGYERDVGARAGSDRYASGGPA 252
GS R SD Y R GD Y G P G +G GY G R G Y GGP
Sbjct: 224 GSNFRGGSDGY--GSGRGFGDGYNGYGGGPGGGNFGGSPGYG---GGRGG---YGGGGPG 275
Query: 253 R-DDGRGY 259
+ G GY
Sbjct: 276 YGNQGGGY 283
Score = 62 (26.9 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 23/73 (31%), Positives = 29/73 (39%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER----GYERDVGARAGSDRYASG 249
G D Y Y G D +G ++ P N YG + G R++G G Y G
Sbjct: 285 GGYDNYGGGNY---GSGNYND-FGNYNQQPSN-YGPMKSGNFGGSRNMGGPYGGGNYGPG 339
Query: 250 GPARDDGRGYRSR 262
G G G RSR
Sbjct: 340 GSGGSGGYGGRSR 352
Score = 47 (21.6 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 226 GYGKERGYERDVGA------RAGSDRYASGGPARDDGRGY 259
G+G RG + G R GSD Y SG D GY
Sbjct: 208 GFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 247
Score = 44 (20.5 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 217 GGSDRYPVNGYGKERGYERDVGARAGSDRYASGG 250
GG Y G G GY+ G GS Y G
Sbjct: 271 GGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG 304
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 139 (54.0 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLS+ TE L N ++++GK+ +C +M + S R RGFGF+T++ +D A+
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 68 MHGREFGDRVISVNKA 83
RV+ +A
Sbjct: 82 -RPHSIDGRVVEPKRA 96
Score = 126 (49.4 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD 62
++FVGG+ + E L + F+ +GKI +I+ +R SG+ RGFGF+T+ D +D
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVD 167
Score = 64 (27.6 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 26/68 (38%), Positives = 28/68 (41%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNG-YGKERGYERDVGARAGSDRYASGGPA 252
GS R SD Y R GD Y G P G +G GY G R G Y GGP
Sbjct: 224 GSNFRGGSDGY--GSGRGFGDGYNGYGGGPGGGNFGGSPGYG---GGRGG---YGGGGPG 275
Query: 253 R-DDGRGY 259
+ G GY
Sbjct: 276 YGNQGGGY 283
Score = 62 (26.9 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 23/73 (31%), Positives = 29/73 (39%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER----GYERDVGARAGSDRYASG 249
G D Y Y G D +G ++ P N YG + G R++G G Y G
Sbjct: 285 GGYDNYGGGNY---GSGNYND-FGNYNQQPSN-YGPMKSGNFGGSRNMGGPYGGGNYGPG 339
Query: 250 GPARDDGRGYRSR 262
G G G RSR
Sbjct: 340 GSGGSGGYGGRSR 352
Score = 47 (21.6 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 226 GYGKERGYERDVGA------RAGSDRYASGGPARDDGRGY 259
G+G RG + G R GSD Y SG D GY
Sbjct: 208 GFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 247
Score = 44 (20.5 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 217 GGSDRYPVNGYGKERGYERDVGARAGSDRYASGG 250
GG Y G G GY+ G GS Y G
Sbjct: 271 GGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG 304
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 156 (60.0 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 27/87 (31%), Positives = 54/87 (62%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+D+ ++F+GGLSW+ +++ L + RFG++++C I + +GR RGFGF+ + D ++D
Sbjct: 27 EDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDR 86
Query: 64 AIREMHGREFGDRVISVNKAQPKMGGE 90
+ E+ + ++I +A+ G E
Sbjct: 87 VL-ELTEHKLDGKLIDPKRAKAIKGKE 112
Score = 115 (45.5 bits), Expect = 0.00011, P = 0.00011
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 3 GKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAM 61
GK+ ++FVGGLS ++TE QL F +G+I ++ + + RGF F+T+A +
Sbjct: 110 GKEPPKKVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPV 169
Query: 62 DDAIREMHGREFGDRVISVNKAQPK 86
+ + + G + AQPK
Sbjct: 170 QKLLENRY-HQIGSGKCEIKVAQPK 193
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 24/76 (31%), Positives = 50/76 (65%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+F+GGLSW+ T++ L++ F +FG++++C + L+ +GR RGFGF+ + + ++D + +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK-VMDQ 59
Query: 69 HGREFGDRVISVNKAQ 84
+ +VI +A+
Sbjct: 60 KEHKLNGKVIDPKRAK 75
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 27/67 (40%), Positives = 46/67 (68%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGR 71
+ M+G+
Sbjct: 64 MMAMNGK 70
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 139 (54.0 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGLS+ TE L N ++++GK+ +C +M + S R RGFGF+T++ +D A+
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
Query: 68 MHGREFGDRVISVNKA 83
RV+ +A
Sbjct: 82 -RPHSIDGRVVEPKRA 96
Score = 128 (50.1 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGG+ + E L + F+ +GKI +I+ +R SG+ RGFGF+T+ D +D + +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 68 MH 69
+
Sbjct: 173 KY 174
Score = 63 (27.2 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 23/73 (31%), Positives = 29/73 (39%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER----GYERDVGARAGSDRYASG 249
G D Y Y G D +G ++ P N YG + G R++G G Y G
Sbjct: 285 GGYDNYGGGNY---GSGSYND-FGNYNQQPSN-YGPMKSGNFGGSRNMGGPYGGGNYGPG 339
Query: 250 GPARDDGRGYRSR 262
G G G RSR
Sbjct: 340 GSGGSGGYGGRSR 352
Score = 59 (25.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 21/65 (32%), Positives = 24/65 (36%)
Query: 217 GGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRAAP-YDRPSRGDRP 275
GGSD Y +G G GY G G + G P GRG P Y G
Sbjct: 229 GGSDGYG-SGRGFGDGYN-GYGGGPGGGNFG-GSPGYGGGRGGYGGGGPGYGNQGGGYGG 285
Query: 276 SFDRY 280
+D Y
Sbjct: 286 GYDNY 290
Score = 47 (21.6 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 226 GYGKERGYERDVGA------RAGSDRYASGGPARDDGRGY 259
G+G RG + G R GSD Y SG D GY
Sbjct: 208 GFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGY 247
Score = 43 (20.2 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 217 GGSDRYPVNGYGKERGYERDVGARAGSDRYASGG 250
GG Y G G GY+ G GS Y G
Sbjct: 271 GGGPGYGNQGGGYGGGYDNYGGGNYGSGSYNDFG 304
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 159 (61.0 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
K +FVG + + TE +L+ F G ++ +++ +R+SG+P+GFGF Y D+
Sbjct: 13 KSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALS 72
Query: 64 AIREMHGREFGDRVISVNKA 83
A+R ++G E G R + V+ A
Sbjct: 73 AMRNLNGYEIGGRTLRVDNA 92
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 151 (58.2 bits), Expect = 9.3e-11, P = 9.3e-11
Identities = 27/76 (35%), Positives = 51/76 (67%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGGLSW+ +++ L++ F +FG++ +C I ++ ++GR RGFGFI + + +++ + +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 68 MHGREFGDRVISVNKA 83
R G R+I KA
Sbjct: 61 KEHRLDG-RLIDPKKA 75
Score = 106 (42.4 bits), Expect = 0.00059, P = 0.00059
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 4 KDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD 62
KD +IFVGGL+ TE ++ F FG+I ++ ++ + + RGF FIT+ + +
Sbjct: 80 KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVK 139
Query: 63 DAIREMHGREFGDRVISVNKAQPK 86
+ + G + + AQPK
Sbjct: 140 KVLEKKFHNVSGSKC-EIKVAQPK 162
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 12 GGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGR 71
G + + TE QL++ F G ++ +++ +R++G+P+G+GF Y D+ A+R ++GR
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 72 EFGDRVISVNKAQPKMGGE 90
EF R + V+ A + E
Sbjct: 62 EFSGRALRVDNAASEKNKE 80
>TAIR|locus:2124799 [details] [associations]
symbol:RSZ22 "RS-containing zinc finger protein 22"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005737
EMBL:CP002687 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HSSP:P19339 GO:GO:0000398 EMBL:AL161579
EMBL:AL031004 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033586 EMBL:AJ002378 EMBL:AY065387
EMBL:AY117206 EMBL:AY086525 IPI:IPI00542071 PIR:T05112 PIR:T52627
RefSeq:NP_001078474.1 RefSeq:NP_194886.1 UniGene:At.23104
ProteinModelPortal:O81126 SMR:O81126 IntAct:O81126 STRING:O81126
PRIDE:O81126 EnsemblPlants:AT4G31580.1 EnsemblPlants:AT4G31580.2
GeneID:829285 KEGG:ath:AT4G31580 TAIR:At4g31580 InParanoid:O81126
OMA:FARECRN PhylomeDB:O81126 Genevestigator:O81126 Uniprot:O81126
Length = 200
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 44/129 (34%), Positives = 64/129 (49%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
+R++VG L VTER+LE+ F FG ++ + + R RP G+ F+ + D R DAIR
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFG-VVR-SVWVAR---RPPGYAFLDFEDPRDARDAIR 56
Query: 67 EMHGREFGDRVI-SVNKAQPKMGGEVSDHXXXXXXXXXXXXXXXXADRPGGQD-DCFKCG 124
+ G+ G RV S N+ + GG D GG D C++CG
Sbjct: 57 ALDGKN-GWRVEQSHNRGERGGGGRGGDRGGGGGGRGGR----------GGSDLKCYECG 105
Query: 125 RPGHWARDC 133
GH+AR+C
Sbjct: 106 ETGHFAREC 114
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 157 (60.3 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 26/78 (33%), Positives = 50/78 (64%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG LSWN+ + L+ F+ G +I ++++ER +G+ RG+G++ + + A + A+ EM
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 69 HGREFGDRVISVNKAQPK 86
G+E R I+++ + K
Sbjct: 230 QGKEIDGRPINLDMSTGK 247
Score = 119 (46.9 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+F+G LS+N L N F +G +I C++ D+ +P+GFG++ ++ A+ M
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAM 331
Query: 69 HGREFGDRVISVNKAQPK 86
+G R ++ + P+
Sbjct: 332 NGEYIEGRPCRLDFSTPR 349
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 157 (60.3 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 26/78 (33%), Positives = 50/78 (64%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+FVG LSWN+ + L+ F+ G +I ++++ER +G+ RG+G++ + + A + A+ EM
Sbjct: 170 LFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALEEM 229
Query: 69 HGREFGDRVISVNKAQPK 86
G+E R I+++ + K
Sbjct: 230 QGKEIDGRPINLDMSTGK 247
Score = 119 (46.9 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
+F+G LS+N L N F +G +I C++ D+ +P+GFG++ ++ A+ M
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAM 331
Query: 69 HGREFGDRVISVNKAQPK 86
+G R ++ + P+
Sbjct: 332 NGEYIEGRPCRLDFSTPR 349
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 155 (59.6 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 26/87 (29%), Positives = 55/87 (63%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
+ + +FVG +S++V+E + + F + G ++ +++ +R++G+P+G+GFI + D + +
Sbjct: 15 RSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEV 74
Query: 64 AIREMHGREFGDRVISVNKAQPKMGGE 90
AIR ++G E R++ V+ A M E
Sbjct: 75 AIRNLNGYELSGRILRVDSAAGGMNME 101
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 156 (60.0 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
R++VG L +N+TE L F+ FG+I Q+M++ ++GR +G+GFIT++D A+ +
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 153
Query: 68 MHGREFGDRVISV 80
++G E R + V
Sbjct: 154 LNGFELAGRPMKV 166
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 147 (56.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
E ++ V G+ W++ L++ +FG + +C +M +R +GR RGFG++T+A + +DA
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFA---SAEDAK 58
Query: 66 REMHGREF-GDRVISVNKAQPK 86
+ G F G+R++ V A PK
Sbjct: 59 NALKGEHFLGNRILEVKVATPK 80
Score = 124 (48.7 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 25/83 (30%), Positives = 49/83 (59%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDD 63
K RIFV + +V+E + F+R+G+I + + + +S + RG GFIT++ +++D
Sbjct: 88 KKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVED 147
Query: 64 AIREMHGREFGDRVISVNKAQPK 86
+ + H + G ++V++A PK
Sbjct: 148 LMEDTH--DLGGTTVAVDRATPK 168
Score = 111 (44.1 bits), Expect = 0.00052, P = 0.00052
Identities = 29/86 (33%), Positives = 41/86 (47%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N+IFVG L + L + F RFG I + I + RGFGF+T+A+ D R
Sbjct: 240 NKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVAR 299
Query: 67 EMH---GREFG-DRVISVNKAQPKMG 88
H G+E D +++A P G
Sbjct: 300 RSHEICGQEVAIDSATPLDEAGPSAG 325
Score = 48 (22.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 21/82 (25%), Positives = 28/82 (34%)
Query: 200 VSDRYPPAGDRLAGDRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
V+DR + G P++ G G + + GGP R GR Y
Sbjct: 293 VADRVARRSHEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEYFGGYGGPMRAFGRMY 352
Query: 260 RSRAA-------PYDRPSRGDR 274
+ P RPSR DR
Sbjct: 353 GGMSLDDWGYGMPNARPSRPDR 374
Score = 39 (18.8 bits), Expect = 9.5e-10, Sum P(2) = 9.5e-10
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 193 YGSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNG 226
Y R ++ D Y P + +G R G + NG
Sbjct: 259 YFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENG 292
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 138 (53.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 23/58 (39%), Positives = 40/58 (68%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
++F+GGLS+ TE L N ++++GK+ +C +M + S R RGFGF+T++ +D A+
Sbjct: 18 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 75
Score = 128 (50.1 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGG+ + E L + F+ +GKI +I+ +R SG+ RGFGF+T+ D +D + +
Sbjct: 109 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 168
Query: 68 MH 69
+
Sbjct: 169 KY 170
Score = 62 (26.9 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 23/73 (31%), Positives = 29/73 (39%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNGYGKER----GYERDVGARAGSDRYASG 249
G D Y Y G D +G ++ P N YG + G R++G G Y G
Sbjct: 281 GGYDNYGGGNY---GSGNYND-FGNYNQQPSN-YGPMKSGNFGGSRNMGGPYGGGNYGPG 335
Query: 250 GPARDDGRGYRSR 262
G G G RSR
Sbjct: 336 GSGGSGGYGGRSR 348
Score = 61 (26.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 25/68 (36%), Positives = 28/68 (41%)
Query: 194 GSRDRYVSDRYPPAGDRLAGDRYGGSDRYPVNG-YGKERGYERDVGARAGSDRYASGGPA 252
GS R +D Y R GD Y G P G +G GY G R G Y GGP
Sbjct: 220 GSNFRGGADGY--GSGRGFGDGYNGYGGGPGGGNFGGSPGYG---GGRGG---YGGGGPG 271
Query: 253 R-DDGRGY 259
+ G GY
Sbjct: 272 YGNQGGGY 279
Score = 44 (20.5 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 217 GGSDRYPVNGYGKERGYERDVGARAGSDRYASGG 250
GG Y G G GY+ G GS Y G
Sbjct: 267 GGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG 300
Score = 43 (20.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 226 GYGKERGYERDVGA------RAGSDRYASGGPARDDGRGY 259
G+G RG + G R G+D Y SG D GY
Sbjct: 204 GFGDARGGGGNFGPGPGSNFRGGADGYGSGRGFGDGYNGY 243
>UNIPROTKB|G4MSA5 [details] [associations]
symbol:MGG_04482 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001231 RefSeq:XP_003710975.1 ProteinModelPortal:G4MSA5
EnsemblFungi:MGG_04482T0 GeneID:2678032 KEGG:mgr:MGG_04482
Uniprot:G4MSA5
Length = 206
Score = 127 (49.8 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
++V G S R L F+R+G+++ C I R S R F F+ Y DRR D+A +M
Sbjct: 8 LYVTGFSHGTRARDLAYEFERYGRLVRCDIPAPR-SASSRLFAFVEYEDRRDADEAYHDM 66
Query: 69 HGREFG-DRVISVNKAQ 84
H + G D ++ + A+
Sbjct: 67 HNKRLGRDDILKIEWAR 83
Score = 64 (27.6 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 29/76 (38%), Positives = 32/76 (42%)
Query: 203 RYPPAGD-RL-AG-DRYGGSDRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY 259
R PP+ R +G DR GSDR G R R G R P +DD R
Sbjct: 83 RTPPSASWRFESGRDRDRGSDR----GDRSRRSPRR--GRSPSPPRRRDYSPRKDDRRDR 136
Query: 260 -RSRAAPYDRPSRGDR 274
R R YDR SR DR
Sbjct: 137 DRDRDRDYDRDSRRDR 152
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 156 (60.0 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 27/73 (36%), Positives = 47/73 (64%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
R++VG L +N+TE L F+ FG+I Q+M++ ++GR +G+GFIT++D A+ +
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 68 MHGREFGDRVISV 80
++G E R + V
Sbjct: 311 LNGFELAGRPMKV 323
>TAIR|locus:2037370 [details] [associations]
symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
Length = 274
Score = 154 (59.3 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 30/91 (32%), Positives = 52/91 (57%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDD 63
++FVGGL+W L FD++G I+E ++ ++++GR +G+GF+T+ D RRA D
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 64 AIREMHGREFGDRVISVNKAQPKMGGEVSDH 94
+ GR + S+ +++P M V H
Sbjct: 85 PTPIIDGRRANCNLASLGRSRPPMQYAVIPH 115
>UNIPROTKB|F1RUT1 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
Ensembl:ENSSSCT00000014143 OMA:NTAMANH Uniprot:F1RUT1
Length = 356
Score = 116 (45.9 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+G L TE+++ + F+++GK++EC I+ + +GF+ D+ A +DAIR
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54
Query: 68 MHGREFGDRVISVNKAQPK 86
+H + I+V ++ K
Sbjct: 55 LHHYKLHGVNINVEASKNK 73
Score = 85 (35.0 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 115 GGQDDCFKCGRPGHWARDCP 134
G Q C++CG+ GHW+++CP
Sbjct: 157 GDQSGCYRCGKEGHWSKECP 176
Score = 37 (18.1 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 12/28 (42%), Positives = 12/28 (42%)
Query: 216 YGGSDRYPVNGYGKERGYERDVGARAGS 243
YG S Y N YG Y V A A S
Sbjct: 205 YGDSLYYN-NAYGALDAYYEAVAAAAAS 231
Score = 36 (17.7 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 223 PVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGYRSRA 263
P G G G+E ++ + + R + AR + Y RA
Sbjct: 311 PTVGEGYGYGHESELSQASAAARNSLYDMARYEREQYADRA 351
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 27/81 (33%), Positives = 49/81 (60%)
Query: 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
+ +++V GLS+ TE L + F++FG +I +++++ + RP+GF F+ Y AI
Sbjct: 76 KTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI 135
Query: 66 REMHGREFGDRVISVNKAQPK 86
+ MHG+ RVI V +A+ +
Sbjct: 136 QGMHGKFLDGRVIFVEEAKTR 156
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 157 (60.3 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD 62
G R++VG L +N+TE L F+ FGKI Q+M++ ++GR +G+GFI++AD
Sbjct: 260 GAGPMRLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAK 319
Query: 63 DAIREMHGREFGDRVISV 80
A+ +++G E R + V
Sbjct: 320 KALEQLNGFELAGRPMKV 337
>MGI|MGI:1913954 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
expression" evidence=IDA] [GO:0043153 "entrainment of circadian
clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
CleanEx:MM_RBM4B Genevestigator:Q8VE92
GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
Length = 357
Score = 117 (46.2 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
Identities = 24/87 (27%), Positives = 47/87 (54%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+G L TE+++ + F+++GK++EC I+ + +GF+ D+ A +DAIR
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54
Query: 68 MHGREFGDRVISVNKAQPKMGGEVSDH 94
+H + I+V ++ K H
Sbjct: 55 LHHYKLHGVNINVEASKNKSKASTKLH 81
Score = 85 (35.0 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 115 GGQDDCFKCGRPGHWARDCP 134
G Q C++CG+ GHW+++CP
Sbjct: 157 GDQSGCYRCGKEGHWSKECP 176
Score = 74 (31.1 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 28/95 (29%), Positives = 48/95 (50%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD- 62
K ++ VG +S T ++L F+ +G +IEC I+ +D + F+ RA D
Sbjct: 75 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KD------YAFVHM--ERAEDA 124
Query: 63 -DAIREMHGREF-GDRV---ISVNKAQ--PKMGGE 90
+AIR + EF G R+ +S ++ + P MG +
Sbjct: 125 VEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQ 159
Score = 35 (17.4 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 214 DRYGGSDRYPVN-GYGKERGYERDVGARAGSDRY 246
++YG R P GYG+ Y GA RY
Sbjct: 192 EQYGAV-RTPYTMGYGESMYYNDAYGALDYYKRY 224
>RGD|1359343 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO;ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 117 (46.2 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
Identities = 24/87 (27%), Positives = 47/87 (54%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+G L TE+++ + F+++GK++EC I+ + +GF+ D+ A +DAIR
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN 54
Query: 68 MHGREFGDRVISVNKAQPKMGGEVSDH 94
+H + I+V ++ K H
Sbjct: 55 LHHYKLHGVNINVEASKNKSKASTKLH 81
Score = 85 (35.0 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 115 GGQDDCFKCGRPGHWARDCP 134
G Q C++CG+ GHW+++CP
Sbjct: 157 GDQSGCYRCGKEGHWSKECP 176
Score = 74 (31.1 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 28/95 (29%), Positives = 48/95 (50%)
Query: 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMD- 62
K ++ VG +S T ++L F+ +G +IEC I+ +D + F+ RA D
Sbjct: 75 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KD------YAFVHM--ERAEDA 124
Query: 63 -DAIREMHGREF-GDRV---ISVNKAQ--PKMGGE 90
+AIR + EF G R+ +S ++ + P MG +
Sbjct: 125 VEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQ 159
Score = 35 (17.4 bits), Expect = 1.7e-10, Sum P(3) = 1.7e-10
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 214 DRYGGSDRYPVN-GYGKERGYERDVGARAGSDRY 246
++YG R P GYG+ Y GA RY
Sbjct: 192 EQYGAV-RTPYTMGYGESMYYNDAYGALDYYKRY 224
WARNING: HSPs involving 944 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.141 0.446 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 280 211 0.00081 112 3 11 22 0.39 33
31 0.48 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1194
No. of states in DFA: 590 (63 KB)
Total size of DFA: 181 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.36u 0.20s 16.56t Elapsed: 00:00:02
Total cpu time: 16.39u 0.20s 16.59t Elapsed: 00:00:02
Start: Fri May 10 08:11:57 2013 End: Fri May 10 08:11:59 2013
WARNINGS ISSUED: 2