BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023559
(280 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=RBG8 PE=1 SV=1
Length = 169
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 58/79 (73%)
Query: 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
E R FVGGL+W + L+ F +FG +I+ +I+ +R+SGR RGFGF+T+ D +AM DAI
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 66 REMHGREFGDRVISVNKAQ 84
EM+G+E RVI+VN+AQ
Sbjct: 65 EEMNGKELDGRVITVNEAQ 83
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2
PE=2 SV=1
Length = 168
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Query: 1 MAGKD-ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRR 59
MA D E R FVGGL+W LE AF FG++I+ +++ +R++GR RGFGF+T++ +
Sbjct: 1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60
Query: 60 AMDDAIREMHGREFGDRVISVNKAQP 85
+M DAI M+G+E R I+VN+AQ
Sbjct: 61 SMLDAIENMNGKELDGRNITVNQAQS 86
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Query: 1 MAGKD-ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRR 59
MA D E R FVGGL+W ER LE AF +FG++++ +I+ +R++GR RGFGF+T+ D +
Sbjct: 1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 60 AMDDAIREMHGREFGDRVISVNKAQ 84
+M DAI M+G++ R I+VN+AQ
Sbjct: 61 SMKDAIEGMNGQDLDGRSITVNEAQ 85
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 1 MAGKD-ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRR 59
MA D E R FVGGL+W + LENAF +G+I++ +++ +R++GR RGFGF+T++
Sbjct: 1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSEN 60
Query: 60 AMDDAIREMHGREFGDRVISVNKAQP 85
+M DAI M+G+E R I+VN+AQ
Sbjct: 61 SMLDAIENMNGKELDGRNITVNQAQS 86
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10
PE=2 SV=1
Length = 169
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 59/80 (73%)
Query: 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
E R FVGGL+W + +LE F +FG++I+ +I+ +R++GR RGFGF+T+ D ++M DAI
Sbjct: 5 EYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 64
Query: 66 REMHGREFGDRVISVNKAQP 85
EM+G+E R I+VN+AQ
Sbjct: 65 DEMNGKELDGRTITVNEAQS 84
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana
GN=RBG7 PE=1 SV=1
Length = 176
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 60/83 (72%)
Query: 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAM 61
+G E R FVGGL+W +R LE AF ++G +I+ +I+ +R++GR RGFGF+T+ D +AM
Sbjct: 3 SGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAM 62
Query: 62 DDAIREMHGREFGDRVISVNKAQ 84
DAI M+G++ R I+VN+AQ
Sbjct: 63 KDAIEGMNGQDLDGRSITVNEAQ 85
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Query: 1 MAGKD-ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRR 59
MA D E R FVGGL+W +R LE AF ++G++++ +I+ +R++GR RGFGF+T+ D +
Sbjct: 1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 60 AMDDAIREMHGREFGDRVISVNKAQ 84
+M DAI M+G++ R I+VN+AQ
Sbjct: 61 SMKDAIEGMNGQDLDGRSITVNEAQ 85
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 56/80 (70%)
Query: 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
E R FVGGL+W + LE AF +FG I + +I+ +R++GR RGFGF+T+ D ++M DAI
Sbjct: 5 EYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAI 64
Query: 66 REMHGREFGDRVISVNKAQP 85
M+G+E R I+VN+AQ
Sbjct: 65 EGMNGQELDGRNITVNEAQS 84
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 57/81 (70%)
Query: 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
E R FVGGL W ++ L+NAF ++G +I+ +I+ +R++GR RGFGF+T+A AM AI
Sbjct: 5 EYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAI 64
Query: 66 REMHGREFGDRVISVNKAQPK 86
M+G++ R I+VN+AQ +
Sbjct: 65 EAMNGQDLDGRNITVNEAQSR 85
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 127/311 (40%), Gaps = 59/311 (18%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKAQ----------------------------------PKMGGEVSD 93
M+G+ + I V +A P GG + D
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGSGGTRGPPSRGGYMDD 128
Query: 94 HGYRGGGYSSGGRGSYGADRPGGQDDCFKCGRPGHWARDCPS----AVGGRGGAGGSFSS 149
GY S RG + R PS + G GG
Sbjct: 129 GGYSMNFNMSSSRGPLPV-----KRGPPPRSGGPPPKRSTPSGPVRSSSGMGGRTPVSRG 183
Query: 150 RSRFGGVGVRGDYLGGGRDRYIDDRYDGGRYGDRDRYDSKDSKYGSRDRYVSDRYPPAGD 209
R +GG R + L RD Y+ R DG Y +D Y S+D SRD D PP D
Sbjct: 184 RDSYGGPPRR-EPLPSRRDVYLSPRDDG--YSTKDSYSSRDYP-SSRD--TRDYAPPPRD 237
Query: 210 RLAGDRYGGSDR--YPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY-RSRAAPY 266
D S R YP GYG GY RD R SD + SGG RD Y SR+AP
Sbjct: 238 YTYRDYSHSSSRDDYPSRGYGDRDGYGRD---RDYSD-HPSGGSYRDSYESYGNSRSAP- 292
Query: 267 DRPSRGDRPSF 277
P+RG PS+
Sbjct: 293 --PTRGPPPSY 301
>sp|P84586|RMXRL_RAT RNA-binding motif protein, X chromosome retrogene-like OS=Rattus
norvegicus GN=Rbmxrtl PE=3 SV=1
Length = 388
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 126/311 (40%), Gaps = 59/311 (18%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ D R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68
Query: 68 MHGREFGDRVISVNKAQ----------------------------------PKMGGEVSD 93
M+G+ + I V +A P GG + D
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGSGGTRGPPSRGGYMDD 128
Query: 94 HGYRGGGYSSGGRGSYGADRPGGQDDCFKCGRPGHWARDCPS----AVGGRGGAGGSFSS 149
GY S RG + R PS + G GG
Sbjct: 129 GGYSMNFNMSSSRGPLPV-----KRGPPPRSGGPPPKRSTPSGPVRSSSGMGGRTPVSRG 183
Query: 150 RSRFGGVGVRGDYLGGGRDRYIDDRYDGGRYGDRDRYDSKDSKYGSRDRYVSDRYPPAGD 209
R +GG R + L RD Y+ R DG Y +D Y S+D SRD D PP D
Sbjct: 184 RDSYGGPPRR-EPLPSRRDVYLSPRDDG--YSTKDSYSSRDYP-SSRD--TRDYAPPPRD 237
Query: 210 RLAGDRYGGSDR--YPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY-RSRAAPY 266
D S R YP GYG GY RD R SD + SGG RD Y SR+AP
Sbjct: 238 YTYRDYSHSSSRDDYPSRGYGDRDGYGRD---REYSD-HPSGGSYRDSYESYGNSRSAP- 292
Query: 267 DRPSRGDRPSF 277
P+RG PS+
Sbjct: 293 --PTRGPPPSY 301
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX
PE=2 SV=1
Length = 391
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 129/315 (40%), Gaps = 64/315 (20%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA-QPKM------------------------------------GGE 90
M+G+ + I V +A +P GG
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGH 128
Query: 91 VSDHGYRGGGYSSGGRGSYGADRPGGQDDCFKCGRPGHWARDCPS----AVGGRGGAGGS 146
+ D GY S RG + R PS + G GG
Sbjct: 129 MDDGGYSMNFNMSSSRGPLPV-----KRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPV 183
Query: 147 FSSRSRFGGVGVRGDYLGGGRDRYIDDRYDGGRYGDRDRYDSKDSKYGSRDRYVSDRYPP 206
R +GG R + L RD Y+ R DG Y +D Y S+D SRD D PP
Sbjct: 184 SRGRDSYGGPPRR-EPLPSRRDVYLSPRDDG--YSTKDSYSSRDYP-SSRD--TRDYAPP 237
Query: 207 AGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY-RSR 262
D D YG S D YP GY GY RD R SD + SGG RD Y SR
Sbjct: 238 PRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD---RDYSD-HPSGGSYRDSYESYGNSR 292
Query: 263 AAPYDRPSRGDRPSF 277
+AP P+RG PS+
Sbjct: 293 SAP---PTRGPPPSY 304
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 129/315 (40%), Gaps = 64/315 (20%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA-QPKM------------------------------------GGE 90
M+G+ + I V +A +P GG
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGH 128
Query: 91 VSDHGYRGGGYSSGGRGSYGADRPGGQDDCFKCGRPGHWARDCPS----AVGGRGGAGGS 146
+ D GY S RG + R PS + G GG
Sbjct: 129 MDDGGYSMNFNMSSSRGPLPV-----KRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPV 183
Query: 147 FSSRSRFGGVGVRGDYLGGGRDRYIDDRYDGGRYGDRDRYDSKDSKYGSRDRYVSDRYPP 206
R +GG R + L RD Y+ R DG Y +D Y S+D SRD D PP
Sbjct: 184 SRGRDSYGGPPRR-EPLPSRRDVYLSPRDDG--YSTKDSYSSRDYP-SSRD--TRDYAPP 237
Query: 207 AGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY-RSR 262
D D YG S D YP GY GY RD R SD + SGG RD Y SR
Sbjct: 238 PRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD---RDYSD-HPSGGSYRDSYESYGNSR 292
Query: 263 AAPYDRPSRGDRPSF 277
+AP P+RG PS+
Sbjct: 293 SAP---PTRGPPPSY 304
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 129/315 (40%), Gaps = 64/315 (20%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA-QPKM------------------------------------GGE 90
M+G+ + I V +A +P GG
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGH 128
Query: 91 VSDHGYRGGGYSSGGRGSYGADRPGGQDDCFKCGRPGHWARDCPS----AVGGRGGAGGS 146
+ D GY S RG + R PS + G GG
Sbjct: 129 MDDGGYSMNFNMSSSRGPLPV-----KRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPV 183
Query: 147 FSSRSRFGGVGVRGDYLGGGRDRYIDDRYDGGRYGDRDRYDSKDSKYGSRDRYVSDRYPP 206
R +GG R + L RD Y+ R DG Y +D Y S+D SRD D PP
Sbjct: 184 SRGRDSYGGPPRR-EPLPSRRDVYLSPRDDG--YSTKDSYSSRDYP-SSRD--TRDYAPP 237
Query: 207 AGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY-RSR 262
D D YG S D YP GY GY RD R SD + SGG RD Y SR
Sbjct: 238 PRDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD---RDYSD-HPSGGSYRDSYESYGNSR 292
Query: 263 AAPYDRPSRGDRPSF 277
+AP P+RG PS+
Sbjct: 293 SAP---PTRGPPPSY 304
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 125/311 (40%), Gaps = 59/311 (18%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ D R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68
Query: 68 MHGREFGDRVISVNKAQ----------------------------------PKMGGEVSD 93
M+G+ + I V +A P GG + D
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGSGGTRGPPSRGGYMDD 128
Query: 94 HGYRGGGYSSGGRGSYGADRPGGQDDCFKCGRPGHWARDCPS-AVGGRGGAGGSFSS--- 149
GY S RG + R PS V G GG
Sbjct: 129 GGYSMNFNMSSSRGPLPV-----KRGPPPRSGGPPPKRSTPSGPVRSSSGMGGRMPVSRG 183
Query: 150 RSRFGGVGVRGDYLGGGRDRYIDDRYDGGRYGDRDRYDSKDSKYGSRDRYVSDRYPPAGD 209
R +GG R + L RD Y+ R DG Y +D Y S+D SRD D PP D
Sbjct: 184 RDSYGGP-PRREPLPSRRDVYLSPRDDG--YSTKDSYSSRD-YLSSRD--TRDYAPPPRD 237
Query: 210 RLAGDRYGGSDR--YPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY-RSRAAPY 266
D S R YP GYG GY RD R SD + SGG RD Y S +AP
Sbjct: 238 YTYRDYSHSSSRDDYPSRGYGDRDGYGRD---REYSD-HPSGGSYRDSYESYGNSCSAP- 292
Query: 267 DRPSRGDRPSF 277
P+RG PS+
Sbjct: 293 --PTRGPPPSY 301
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 54/80 (67%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
+++FVGGLSW + L+ AF FG++ E ++ +R++GR RGFGF++++ + ++AI+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 67 EMHGREFGDRVISVNKAQPK 86
EM G+E R I VN A +
Sbjct: 95 EMDGKELNGRQIRVNLATER 114
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 55/77 (71%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
+++F+GG+++++ E L AF ++G++++ +++L+R++GR RGFGF+T+ A AI+
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 67 EMHGREFGDRVISVNKA 83
+ GR+ RV+ VN A
Sbjct: 100 ALDGRDLHGRVVKVNYA 116
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 62/98 (63%), Gaps = 8/98 (8%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKAQPKMGGEVSDH---GYRGG 99
+ M+G+ R I V++A G+ SD+ GYRGG
Sbjct: 64 MMAMNGKSVDGRQIRVDQA-----GKSSDNRSRGYRGG 96
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 62/98 (63%), Gaps = 8/98 (8%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 65 IREMHGREFGDRVISVNKAQPKMGGEVSDH---GYRGG 99
+ M+G+ R I V++A G+ SD+ GYRGG
Sbjct: 64 MMAMNGKSVDGRQIRVDQA-----GKSSDNRSRGYRGG 96
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 129/315 (40%), Gaps = 64/315 (20%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E ++ +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA-QPKM------------------------------------GGE 90
M+G+ + I V +A +P GG
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSRGGH 128
Query: 91 VSDHGYRGGGYSSGGRGSYGADRPGGQDDCFKCGRPGHWARDCPSAV----GGRGGAGGS 146
+ D GY S RG + R PS + G GG
Sbjct: 129 MDDGGYSMNFNMSSSRGPLPV-----KRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRAPL 183
Query: 147 FSSRSRFGGVGVRGDYLGGGRDRYIDDRYDGGRYGDRDRYDSKDSKYGSRDRYVSDRYPP 206
R +GG R + L RD Y+ R DG Y +D Y S+D SRD D PP
Sbjct: 184 SRGRDSYGGP-PRREPLPSRRDVYLSPRDDG--YSTKDSYSSRDYP-SSRD--TRDYAPP 237
Query: 207 AGDRLAGDRYGGS---DRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY-RSR 262
D D YG S D YP GYG GY RD R SD + SGG RD Y SR
Sbjct: 238 PRDYTYRD-YGHSSSRDDYPSRGYGDRDGYGRD---RDYSD-HPSGGSYRDSYESYGNSR 292
Query: 263 AAPYDRPSRGDRPSF 277
+AP +RG PS+
Sbjct: 293 SAPL---TRGPPPSY 304
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 131/314 (41%), Gaps = 62/314 (19%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA-QPKM------------------------------------GGE 90
M+G+ + I V +A +P GG
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGLPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGH 128
Query: 91 VSDHGYRGGGYSSGGRGSYGADRPGGQDDCFKCGRPGHWARDCPS-AVGGRGGAGG-SFS 148
+ D GY S RG + R PS V G GG +
Sbjct: 129 MDDGGYSMNFTLSSSRGPLPV-----KRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPV 183
Query: 149 SRSRFG-GVGVRGDYLGGGRDRYIDDRYDGGRYGDRDRYDSKDSKYGSRDRYVSDRYPPA 207
SR R G G R + L RD Y+ R DG Y +D Y S+D SRD D PP
Sbjct: 184 SRGRDGYGGPPRREPLPSRRDVYLSPRDDG--YSTKDSYSSRDYP-SSRD--TRDYAPPP 238
Query: 208 GDRLAGDRYGGS---DRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY-RSRA 263
D D YG S D YP GY GY R+ R SD + SGG RD Y SR+
Sbjct: 239 RDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRE---RDYSD-HPSGGSYRDSYESYGNSRS 293
Query: 264 APYDRPSRGDRPSF 277
AP P+RG PS+
Sbjct: 294 AP---PTRGPPPSY 304
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+E ++FVGGL++N E+ LE+ F FG I E ++ +R++ R RGFGFIT+ + D
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDV 63
Query: 65 IREMHGREFGDRVISVNKAQPKMGGEVSDHGYRGGGYSSGGRG 107
+R M+G R I V+ A S G RGG + + GRG
Sbjct: 64 MRAMNGESLDGRQIRVDHAGK------SARGTRGGAFGAHGRG 100
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 16/143 (11%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGG+ + TE + N F++FG++++ +M+++D+GRPRGFGF+TY + A++ + +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 68 ----MHGREFGDRVISVNKAQPKMGGEVS----DHGYRGGG--YSSGGRGSYGADRPGGQ 117
+HG + + V +A PK S HGY G Y + YG P
Sbjct: 308 PYITIHG-----KPVEVKRATPKASLRDSHDRHQHGYHGNANPYYAQNMNMYGGMTPAMM 362
Query: 118 DDCFKCGRPGHWA-RDCPSAVGG 139
++ + A R+ P+A G
Sbjct: 363 AQYYRQMQQYMEAMRNMPAAAGA 385
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+W T+ L + F++FG++++C +M + +GR RGFGF+T+ + + +++ + +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 68 MHGREFGDRVISVNKAQPKMGGEVSDHGYRGG 99
H ++I +A P+ E + + GG
Sbjct: 224 EH--HLDGKIIDPKRAIPREEQEKTAKMFVGG 253
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 131/314 (41%), Gaps = 62/314 (19%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+I+E +M +R++ + RGF F+T+ DA R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 68 MHGREFGDRVISVNKA-QPKM------------------------------------GGE 90
M+G+ + I V +A +P GG
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFESGRRGLPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGH 128
Query: 91 VSDHGYRGGGYSSGGRGSYGADRPGGQDDCFKCGRPGHWARDCPS-AVGGRGGAGG-SFS 148
+ D GY S RG + R PS V G GG +
Sbjct: 129 MDDGGYSMNFTMSSSRGPLPV-----KRGPPPRSGGPPPKRSAPSGPVRSSSGLGGRAPV 183
Query: 149 SRSRFG-GVGVRGDYLGGGRDRYIDDRYDGGRYGDRDRYDSKDSKYGSRDRYVSDRYPPA 207
SR R G G R + L RD Y+ R DG Y +D Y S++ SRD D PP
Sbjct: 184 SRGRDGYGGPPRREPLPSRRDVYLSPRDDG--YSTKDSYSSREYP-SSRD--TRDYAPPP 238
Query: 208 GDRLAGDRYGGS---DRYPVNGYGKERGYERDVGARAGSDRYASGGPARDDGRGY-RSRA 263
D D YG S D YP GY GY RD R SD + SGG RD Y SR+
Sbjct: 239 RDYTYRD-YGHSSSRDDYPSRGYSDRDGYGRD---RDYSD-HPSGGSYRDSYESYGNSRS 293
Query: 264 APYDRPSRGDRPSF 277
AP P+RG PS+
Sbjct: 294 AP---PTRGPPPSY 304
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
NR++VG LSW V + LEN F+ GK++E +++ +RDSGR +GFGF+T + + + AI
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 67 EMHGREFGDRVISVNKAQ 84
++G + R I V++A+
Sbjct: 317 SLNGADLDGRQIRVSEAE 334
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVG LS+NV QL F+ G + +++ ++ +GR RGFGF+T + ++ A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 68 MHGREFGDRVISVNKAQP 85
+G EF R + VN P
Sbjct: 160 FNGYEFEGRPLRVNAGPP 177
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx
PE=2 SV=1
Length = 379
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ +E+ LE F +FG+I E +M +R++ + RGF F+TY + DA RE
Sbjct: 9 KLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAARE 68
Query: 68 MHGREFGDRVISVNKAQ 84
M+G+ + I V +A
Sbjct: 69 MNGKPLDGKPIKVEQAT 85
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 50/79 (63%)
Query: 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
++F+GGLSW + L +AF FG +++ +++++R++GR RGFGF+ + D A AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 66 REMHGREFGDRVISVNKAQ 84
EM G+E R I VN A
Sbjct: 94 SEMDGKELNGRHIRVNPAN 112
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 53/78 (67%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
NR++VG LSW V + LE+ F GK++E +++ +RDSGR +GFGF+TY + + +AI+
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 67 EMHGREFGDRVISVNKAQ 84
+ G + R I V++A+
Sbjct: 264 SLDGADLDGRQIRVSEAE 281
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVG L +NV QL F+ G + +++ ++ +GR RGFGF+T + ++ A ++
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 68 MHGREFGDRVISVNKAQP 85
+G E R + VN P
Sbjct: 152 FNGYELDGRPLRVNAGPP 169
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGL++ TE LE F ++G++ E ++ +R+S R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MMAMNGKSVDGRQIRVDQA 82
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 53/80 (66%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
NR++VG LSW V + L+ F G +++ +++ +RDSGR RGFGF+TY+ + ++DAI
Sbjct: 207 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAID 266
Query: 67 EMHGREFGDRVISVNKAQPK 86
++G + R I V+ A+ +
Sbjct: 267 SLNGVDLDGRSIRVSAAEER 286
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVG L ++V L F+R G + +++ ++ +GR RGFGF+T + + ++ A ++
Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147
Query: 68 MHGREFGDRVISVNKAQPKMGGEVSDH-GYRGGGYSSGG 105
+G E R I VN E S G RGG S GG
Sbjct: 148 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGG 186
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 53/80 (66%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
NR++VG LSW V + L+ F G +++ +++ +RDSGR RGFGF+TY+ + ++DAI
Sbjct: 208 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAID 267
Query: 67 EMHGREFGDRVISVNKAQPK 86
++G + R I V+ A+ +
Sbjct: 268 SLNGIDLDGRSIRVSAAEER 287
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVG L ++V L F+R G + +++ ++ SGR RGFGF+T + + ++ A ++
Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148
Query: 68 MHGREFGDRVISVNKAQPKMGGEVSDH-GYRGGGYSSGG 105
+G E R I VN E S G RGG S GG
Sbjct: 149 FNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGG 187
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+E ++FVGGL++N E+ LE+ F FG I E ++ +R++ R RGFGFIT+ + DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+R M+G R I V+ A
Sbjct: 64 MRAMNGESLDGRQIRVDHA 82
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVGGLSW T+ L F RFG II+C +M +SGR RGFGF+T+AD ++ ++
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 68 ----MHGREFGDRVISVNKAQ-PKMGG 89
+ GR + + Q PK GG
Sbjct: 68 GPHTLDGRTIDPKPCNPRTLQKPKKGG 94
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL NVTE L F+R+GK+ E IM +++ + RGFGF+++ + +++ E
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Query: 68 MHGREFGDRVISVNKAQPK--MGGEVSDHGYRGGGY 101
+ G +V + KA+P+ GG+ S++ GG Y
Sbjct: 157 RYINLNGKQV-EIKKAEPRDGSGGQNSNNSTVGGAY 191
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
NR++VG L+W V + LE F GK+++ +++ +RDSGR RGFGF+TY+ +++AI
Sbjct: 188 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 247
Query: 67 EMHGREFGDRVISVNKAQ 84
+ G + R I V+ A+
Sbjct: 248 SLDGVDLNGRAIRVSPAE 265
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVG L ++ L F+R G + +++ ++ +GR RGFGF+T + + ++ A ++
Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 68 MHGREFGDRVISVNKAQP 85
+G E R + VN P
Sbjct: 148 FNGYELDGRALRVNSGPP 165
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW + L + F +FG+I EC +M + + R RGFGF+T+AD ++D
Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78
Query: 65 I----REMHGREFGDRVISVNKAQPKM 87
+ E+ + +V +AQPKM
Sbjct: 79 LGQPHHELDSKTIDPKVAFPRRAQPKM 105
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N ++ F++FGK+ + +M ++ + R RGFGF+T+ + ++ + E
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCE 169
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 170 IHFHEINNKMVECKKAQPK 188
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N+IFVGG+ N E +L+ F+RFG + E ++ + + RPRGFGFIT+ D +++D A+
Sbjct: 114 NKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 173
Query: 67 EMHGREFGDRVISVNKAQPK 86
MH + + + V +A+P+
Sbjct: 174 -MHFHDIMGKKVEVKRAEPR 192
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 38/58 (65%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI 65
++FVGGL W+ T+ L + F ++G++++C IM ++ + + RGFGF+ + D + +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVL 68
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW + L + F +FG+I EC +M + + R RGFGF+T+AD ++D
Sbjct: 19 DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78
Query: 65 I----REMHGREFGDRVISVNKAQPKM 87
+ E+ + +V +AQPKM
Sbjct: 79 LGQPHHELDSKTIDPKVAFPRRAQPKM 105
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVGGLS N ++ F++FGK+ + +M ++ + R RGFGF+T+ + ++ + E
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCE 169
Query: 68 MHGREFGDRVISVNKAQPK 86
+H E ++++ KAQPK
Sbjct: 170 IHFHEINNKMVECKKAQPK 188
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
NR++VG L+W V + LE F GK+++ +++ +RDSGR RGFGF+TY+ +++AI
Sbjct: 194 NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIE 253
Query: 67 EMHGREFGDRVISVNKAQ 84
+ G + R I V+ A+
Sbjct: 254 SLDGVDLNGRAIRVSPAE 271
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
+IFVG L ++ L F+R G + +++ ++ +GR RGFGF+T + + ++ A ++
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 68 MHGREFGDRVISVNKAQP 85
+G E R + VN P
Sbjct: 148 FNGYELDGRALRVNSGPP 165
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
+IFVGGLS N T +++ F++FGK+ + +M ++ + R RGFGF+T+ + + + +
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF-ESEDIVEKVC 167
Query: 67 EMHGREFGDRVISVNKAQPK 86
E+H E ++++ KAQPK
Sbjct: 168 EIHFHEINNKMVECKKAQPK 187
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW T+ L F +FG++ EC +M + + R RGFGF+T+ D+ +D
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 65 I----REMHGREFGDRVISVNKAQPKM 87
+ E+ + +V +AQPKM
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKM 104
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Query: 9 IFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68
I+VG LS++VT+ L F +G + Q+ +R++GR RGFGF+ A D AI+ +
Sbjct: 3 IYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQAL 62
Query: 69 HGREFGDRVISVNKAQPKMGGEVSDHGYRGGG 100
G E+ RV+ VNKA+P+ + G R GG
Sbjct: 63 DGAEWMGRVLKVNKARPR-----EEKGARSGG 89
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
+IFVGGLS N T +++ F++FGK+ + +M ++ + R RGFGF+T+ + + + +
Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF-ESEDIVEKVC 167
Query: 67 EMHGREFGDRVISVNKAQPK 86
E+H E ++++ KAQPK
Sbjct: 168 EIHFHEINNKMVECKKAQPK 187
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW T+ L F +FG++ EC +M + + R RGFGF+T+ D+ +D
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 65 I----REMHGREFGDRVISVNKAQPKM 87
+ E+ + +V +AQPKM
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKM 104
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N+IFVGG+ N E +L F +FG + E ++ + + RPRGFGFIT+ D +++D A+
Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Query: 67 EMHGREFGDRVISVNKAQPK 86
MH + + + V +A+P+
Sbjct: 173 -MHFHDIMGKKVEVKRAEPR 191
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 2 AGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRA 60
AG DE ++FVGGL W+ T+ L + F ++G++++C IM ++ + + RGFGF+ + D
Sbjct: 4 AGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63
Query: 61 MDDAI----REMHGREFGDRVISVNKAQPK 86
+ + + GR + + QP+
Sbjct: 64 VGTVLASRPHTLDGRNIDPKPCTPRGMQPE 93
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 47/77 (61%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++F+GGL+ E+ LE F ++G+++E +M +R++ + RGF F+T+ DA RE
Sbjct: 9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68
Query: 68 MHGREFGDRVISVNKAQ 84
++G+ + I V +A
Sbjct: 69 LNGKALDGKPIKVEQAT 85
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
N+IFVGG+ N E +L F +FG + E ++ + + RPRGFGFIT+ D +++D A+
Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Query: 67 EMHGREFGDRVISVNKAQPK 86
MH + + + V +A+P+
Sbjct: 173 -MHFHDIMGKKVEVKRAEPR 191
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 2 AGKDE-NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRA 60
+G DE ++FVGGL W+ T+ L + F ++G++++C IM ++ + + RGFGF+ + D
Sbjct: 4 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNC 63
Query: 61 MDDAI----REMHGREFGDRVISVNKAQPK 86
+ + + GR + + QP+
Sbjct: 64 VGTVLASRPHTLDGRNIDPKPCTPRGMQPE 93
>sp|Q9SIX3|RBG1_ARATH Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis
thaliana GN=RBG1 PE=2 SV=2
Length = 149
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 51/75 (68%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+E R FVGGL+W E+ +E F+ FG++ + +I+++R++GR +GF F+T+ D +M A
Sbjct: 6 NEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTA 65
Query: 65 IREMHGREFGDRVIS 79
I M+G+E R I+
Sbjct: 66 IDRMNGQELDGRNIT 80
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66
+IFVGGLS N T ++ F++FGK+ + +M ++ + R RGFGF+T+ + + + +
Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF-ESEDIVEKVC 167
Query: 67 EMHGREFGDRVISVNKAQPK 86
E+H E ++++ KAQPK
Sbjct: 168 EIHFHEINNKMVECKKAQPK 187
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
D ++F+GGLSW T+ L F +FG++ EC +M + + R RGFGF+T+ D+ +D
Sbjct: 18 DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 77
Query: 65 I----REMHGREFGDRVISVNKAQPKM 87
+ E+ + +V +AQPKM
Sbjct: 78 LAQSRHELDSKTIDPKVAFPRRAQPKM 104
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
R++VG L W+V +LE F GK++E +++ +R++GR RGFGF+T +D +++AI
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 68 MHGREFGDRVISVNKAQ 84
+ G+ R I VN A+
Sbjct: 305 LDGQNLEGRAIRVNVAE 321
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 50/82 (60%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+E ++FVG L+++V + L F++ G + +++ R++ + RGFGF+T + + A
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 65 IREMHGREFGDRVISVNKAQPK 86
+ + + + R+++VNKA P+
Sbjct: 208 VEKFNRYDLNGRLLTVNKAAPR 229
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
DE ++FVGGLS++ E+ LE F ++G+I E ++ +R++ R RGFGF+T+ + DA
Sbjct: 4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+ M+G+ R I V++A
Sbjct: 64 MAGMNGKTVDGRQIRVDQA 82
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
RI+VG + W++ + +LE F GK++ +++ +R+SGR RGFGF+T + M +AI
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query: 68 MHGREFGDRVISVNKAQ 84
+ G+ R I VN A+
Sbjct: 252 LDGQTLDGRTIRVNAAE 268
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%)
Query: 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67
++FVG L +++ L F + G + +++ R++ R RGFGF+T + D A+
Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157
Query: 68 MHGREFGDRVISVNKAQPK 86
+ R+++VNKA P+
Sbjct: 158 YSQYDLNGRLLTVNKAAPR 176
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDA 64
+E ++FVGGL++N E+ LE+ F FG I E ++ +R++ R RGFGFIT+ + A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 65 IREMHGREFGDRVISVNKA 83
+R M+G R I V+ A
Sbjct: 64 MRAMNGESLDGRQIRVDHA 82
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.143 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,277,608
Number of Sequences: 539616
Number of extensions: 7384433
Number of successful extensions: 31611
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 808
Number of HSP's that attempted gapping in prelim test: 19734
Number of HSP's gapped (non-prelim): 6544
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)