Query 023559
Match_columns 280
No_of_seqs 427 out of 2387
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 08:54:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 9.1E-23 3.1E-27 157.3 11.5 81 5-85 18-98 (99)
2 1h2v_Z 20 kDa nuclear CAP bind 99.9 1.8E-22 6.3E-27 167.0 12.7 87 4-90 37-123 (156)
3 2dnz_A Probable RNA-binding pr 99.9 8.7E-22 3E-26 149.2 12.7 87 3-89 2-88 (95)
4 3s8s_A Histone-lysine N-methyl 99.9 7.7E-22 2.6E-26 155.1 12.0 85 3-87 3-87 (110)
5 1whw_A Hypothetical protein ri 99.9 2.2E-21 7.4E-26 148.3 12.8 88 3-90 5-92 (99)
6 2cq0_A Eukaryotic translation 99.9 1.2E-21 4.2E-26 150.8 11.4 88 3-90 12-99 (103)
7 2cpz_A CUG triplet repeat RNA- 99.9 1.5E-21 5.2E-26 153.4 11.9 88 3-90 22-109 (115)
8 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.4E-21 4.8E-26 145.6 11.1 85 3-87 3-87 (87)
9 2dgs_A DAZ-associated protein 99.9 2E-21 6.8E-26 148.6 12.2 87 3-90 7-93 (99)
10 1x5s_A Cold-inducible RNA-bind 99.9 1.2E-21 4.1E-26 150.5 10.7 88 3-90 9-96 (102)
11 1wi8_A EIF-4B, eukaryotic tran 99.9 2E-21 6.8E-26 150.1 11.8 88 1-90 10-98 (104)
12 2lxi_A RNA-binding protein 10; 99.9 3.7E-22 1.3E-26 151.4 7.5 84 6-89 1-86 (91)
13 1x5t_A Splicing factor 3B subu 99.9 1.5E-21 5E-26 148.2 10.7 88 3-90 2-90 (96)
14 2dnm_A SRP46 splicing factor; 99.9 1.5E-21 5.1E-26 150.4 10.9 88 3-90 10-97 (103)
15 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.4E-21 4.9E-26 150.1 10.6 88 3-90 9-96 (102)
16 1x5u_A Splicing factor 3B subu 99.9 2.2E-21 7.4E-26 149.8 11.5 88 3-90 12-99 (105)
17 2cqd_A RNA-binding region cont 99.9 6E-21 2E-25 150.2 13.7 88 2-90 13-100 (116)
18 3ex7_B RNA-binding protein 8A; 99.9 1.4E-21 4.8E-26 155.9 9.9 88 3-90 19-106 (126)
19 2dgp_A Bruno-like 4, RNA bindi 99.9 2.4E-21 8.2E-26 149.8 10.7 89 2-90 9-100 (106)
20 2dng_A Eukaryotic translation 99.9 4.6E-21 1.6E-25 147.8 12.2 87 2-90 11-97 (103)
21 3md1_A Nuclear and cytoplasmic 99.9 4.7E-21 1.6E-25 141.5 11.7 82 6-87 1-82 (83)
22 2cpf_A RNA binding motif prote 99.9 3.1E-21 1.1E-25 147.1 11.1 88 3-90 2-92 (98)
23 2d9p_A Polyadenylate-binding p 99.9 3.2E-21 1.1E-25 148.5 11.1 87 2-90 11-97 (103)
24 1u6f_A Tcubp1, RNA-binding pro 99.9 6E-21 2E-25 154.7 13.3 88 3-90 39-126 (139)
25 2dgo_A Cytotoxic granule-assoc 99.9 6.1E-21 2.1E-25 149.8 12.9 88 3-90 12-99 (115)
26 1x4h_A RNA-binding protein 28; 99.9 5.8E-21 2E-25 148.7 12.4 88 3-90 12-105 (111)
27 2fy1_A RNA-binding motif prote 99.9 5.1E-21 1.7E-25 151.4 12.1 88 1-89 2-89 (116)
28 2do4_A Squamous cell carcinoma 99.9 5.8E-21 2E-25 146.3 12.0 85 3-88 14-98 (100)
29 2cph_A RNA binding motif prote 99.8 5.2E-21 1.8E-25 148.0 11.5 88 3-90 12-101 (107)
30 2cpe_A RNA-binding protein EWS 99.8 4.7E-21 1.6E-25 150.0 11.3 88 3-90 12-107 (113)
31 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.5E-21 1.9E-25 141.7 10.7 82 3-84 4-85 (85)
32 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.8E-20 6.3E-25 144.2 13.7 86 3-90 12-97 (103)
33 2dnh_A Bruno-like 5, RNA bindi 99.8 9.3E-21 3.2E-25 146.2 12.0 86 4-90 13-101 (105)
34 2cqc_A Arginine/serine-rich sp 99.8 7.4E-21 2.5E-25 143.9 11.1 83 3-85 12-94 (95)
35 1x4a_A Splicing factor, argini 99.8 1.6E-20 5.4E-25 146.2 13.2 85 2-89 18-102 (109)
36 1p27_B RNA-binding protein 8A; 99.8 5.3E-21 1.8E-25 147.9 10.5 85 4-88 21-105 (106)
37 2dh8_A DAZ-associated protein 99.8 6.1E-21 2.1E-25 147.4 10.7 87 3-90 13-99 (105)
38 2e5h_A Zinc finger CCHC-type a 99.8 8.1E-21 2.8E-25 143.6 10.9 82 3-84 13-94 (94)
39 2x1f_A MRNA 3'-END-processing 99.8 9.4E-21 3.2E-25 144.2 11.3 84 5-88 1-84 (96)
40 2cq3_A RNA-binding protein 9; 99.8 2.2E-20 7.7E-25 143.7 13.4 86 3-90 12-97 (103)
41 2div_A TRNA selenocysteine ass 99.8 6.8E-21 2.3E-25 145.5 10.2 86 2-87 5-95 (99)
42 2dhg_A TRNA selenocysteine ass 99.8 9E-21 3.1E-25 146.1 10.8 87 3-90 6-94 (104)
43 2lkz_A RNA-binding protein 5; 99.8 3.5E-21 1.2E-25 147.7 8.2 83 3-85 6-94 (95)
44 3pgw_S U1-70K; protein-RNA com 99.8 1.8E-20 6.2E-25 179.9 15.1 88 4-91 100-187 (437)
45 4a8x_A RNA-binding protein wit 99.8 8.5E-21 2.9E-25 141.4 10.0 85 4-88 2-87 (88)
46 1oo0_B CG8781-PA, drosophila Y 99.8 1.1E-20 3.7E-25 147.2 10.8 85 4-88 24-108 (110)
47 3ns6_A Eukaryotic translation 99.8 2.2E-21 7.7E-26 149.4 6.5 84 3-86 3-93 (100)
48 3p5t_L Cleavage and polyadenyl 99.8 2.3E-21 8E-26 146.1 6.4 83 7-89 2-86 (90)
49 4f25_A Polyadenylate-binding p 99.8 1.6E-20 5.4E-25 148.2 11.2 83 5-89 4-86 (115)
50 3ulh_A THO complex subunit 4; 99.8 2.4E-20 8.1E-25 144.4 11.6 81 3-84 26-106 (107)
51 2dgx_A KIAA0430 protein; RRM d 99.8 2.9E-20 1E-24 141.8 11.8 83 4-89 7-93 (96)
52 3ucg_A Polyadenylate-binding p 99.8 2.9E-20 1E-24 138.9 11.4 82 5-87 5-86 (89)
53 2ywk_A Putative RNA-binding pr 99.8 2.4E-20 8.1E-25 141.3 10.9 82 3-85 13-94 (95)
54 2kxn_B Transformer-2 protein h 99.8 9.9E-21 3.4E-25 152.7 9.3 86 3-88 43-128 (129)
55 2cqg_A TDP-43, TAR DNA-binding 99.8 5.5E-20 1.9E-24 141.6 13.1 86 3-90 12-97 (103)
56 2do0_A HnRNP M, heterogeneous 99.8 3.5E-20 1.2E-24 145.1 12.1 86 3-89 12-97 (114)
57 2dgv_A HnRNP M, heterogeneous 99.8 2.5E-20 8.6E-25 140.3 10.9 86 2-89 4-89 (92)
58 2cpi_A CCR4-NOT transcription 99.8 1.8E-20 6.1E-25 146.9 10.4 86 3-88 12-103 (111)
59 2jrs_A RNA-binding protein 39; 99.8 1.8E-20 6.3E-25 146.4 10.3 85 3-87 23-107 (108)
60 1x4c_A Splicing factor, argini 99.8 6.6E-20 2.3E-24 142.8 13.3 81 3-90 12-97 (108)
61 2cqp_A RNA-binding protein 12; 99.8 1.1E-20 3.8E-25 144.0 8.4 84 4-87 13-96 (98)
62 2khc_A Testis-specific RNP-typ 99.8 1.7E-20 5.8E-25 147.9 9.4 82 3-84 37-118 (118)
63 2la6_A RNA-binding protein FUS 99.8 2.9E-20 1E-24 142.2 10.3 82 3-84 10-99 (99)
64 3s7r_A Heterogeneous nuclear r 99.8 6.6E-20 2.3E-24 136.7 11.6 80 3-83 8-87 (87)
65 1x4b_A Heterogeneous nuclear r 99.8 4.1E-20 1.4E-24 145.4 11.0 84 6-90 27-110 (116)
66 2dgw_A Probable RNA-binding pr 99.8 6.3E-20 2.2E-24 138.1 11.4 83 3-88 7-89 (91)
67 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.2E-20 1.4E-24 154.5 11.5 87 4-90 70-156 (165)
68 2ek1_A RNA-binding protein 12; 99.8 1.2E-20 3.9E-25 143.0 7.3 82 4-85 13-94 (95)
69 3q2s_C Cleavage and polyadenyl 99.8 2.6E-21 8.9E-26 170.8 3.9 82 5-86 67-150 (229)
70 2fc8_A NCL protein; structure 99.8 5.2E-20 1.8E-24 141.3 10.3 84 3-89 12-95 (102)
71 2dis_A Unnamed protein product 99.8 4.6E-20 1.6E-24 143.3 9.9 87 3-89 5-95 (109)
72 1x4e_A RNA binding motif, sing 99.8 1.2E-20 3.9E-25 140.3 5.9 82 3-84 2-83 (85)
73 2dnq_A RNA-binding protein 4B; 99.8 1.4E-19 4.6E-24 136.1 11.9 80 3-90 5-84 (90)
74 3n9u_C Cleavage and polyadenyl 99.8 4.5E-20 1.5E-24 153.8 10.1 82 5-86 54-137 (156)
75 2rs2_A Musashi-1, RNA-binding 99.8 8E-20 2.7E-24 142.9 11.0 85 4-89 23-107 (109)
76 1sjq_A Polypyrimidine tract-bi 99.8 7E-20 2.4E-24 143.1 10.2 82 3-90 13-96 (105)
77 2dgu_A Heterogeneous nuclear r 99.8 2.7E-19 9.2E-24 137.9 13.4 80 4-91 9-88 (103)
78 2cq4_A RNA binding motif prote 99.8 3.8E-20 1.3E-24 145.1 8.7 82 6-88 25-106 (114)
79 2fc9_A NCL protein; structure 99.8 1.2E-19 4E-24 139.2 11.1 83 3-89 12-94 (101)
80 1wez_A HnRNP H', FTP-3, hetero 99.8 4.9E-20 1.7E-24 142.7 9.0 82 3-87 12-93 (102)
81 2m2b_A RNA-binding protein 10; 99.8 1.9E-20 6.5E-25 150.9 6.7 86 3-89 20-111 (131)
82 2kn4_A Immunoglobulin G-bindin 99.8 1.2E-19 4.2E-24 149.9 11.6 87 4-90 68-154 (158)
83 1p1t_A Cleavage stimulation fa 99.8 4.6E-20 1.6E-24 141.9 8.4 85 4-88 6-90 (104)
84 2kt5_A RNA and export factor-b 99.8 1.7E-19 5.9E-24 143.6 11.5 85 4-89 33-117 (124)
85 2dgt_A RNA-binding protein 30; 99.8 3.3E-19 1.1E-23 134.6 12.4 81 2-90 6-86 (92)
86 2lea_A Serine/arginine-rich sp 99.8 3.4E-20 1.2E-24 150.6 7.0 87 4-90 45-131 (135)
87 2jwn_A Embryonic polyadenylate 99.8 2E-19 7E-24 142.9 11.2 83 6-89 36-118 (124)
88 1x5o_A RNA binding motif, sing 99.8 1.6E-19 5.5E-24 141.4 10.4 83 3-86 22-112 (114)
89 2j76_E EIF-4B, EIF4B, eukaryot 99.8 3.8E-20 1.3E-24 142.2 6.4 83 3-87 16-99 (100)
90 1x4d_A Matrin 3; structural ge 99.8 1.6E-19 5.4E-24 140.3 9.8 80 3-88 12-94 (102)
91 1why_A Hypothetical protein ri 99.8 2.1E-19 7.2E-24 136.9 10.3 80 3-88 14-95 (97)
92 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2E-19 6.9E-24 145.2 10.8 81 3-83 60-140 (140)
93 1s79_A Lupus LA protein; RRM, 99.8 7.9E-20 2.7E-24 142.0 7.9 81 3-85 8-88 (103)
94 2dnp_A RNA-binding protein 14; 99.8 3.8E-19 1.3E-23 133.7 11.4 79 3-89 6-84 (90)
95 2cpx_A Hypothetical protein FL 99.8 3.7E-20 1.3E-24 145.1 6.0 87 4-90 23-109 (115)
96 2cpy_A RNA-binding protein 12; 99.8 5.6E-20 1.9E-24 144.7 6.8 83 3-87 12-95 (114)
97 2cq1_A PTB-like protein L; RRM 99.8 5E-19 1.7E-23 137.2 11.9 82 3-90 12-95 (101)
98 2err_A Ataxin-2-binding protei 99.8 2E-19 6.9E-24 140.5 9.7 83 3-87 26-108 (109)
99 2mss_A Protein (musashi1); RNA 99.8 6.2E-20 2.1E-24 133.1 6.3 75 8-83 1-75 (75)
100 3r27_A HnRNP L, heterogeneous 99.8 4.4E-19 1.5E-23 137.3 11.4 79 3-87 18-98 (100)
101 1x4g_A Nucleolysin TIAR; struc 99.8 5.9E-19 2E-23 137.4 12.0 82 3-90 22-103 (109)
102 1uaw_A Mouse-musashi-1; RNP-ty 99.8 6.3E-20 2.2E-24 133.5 6.1 76 7-83 1-76 (77)
103 1wg5_A Heterogeneous nuclear r 99.8 2.6E-19 8.8E-24 138.6 9.7 83 3-87 12-95 (104)
104 2ki2_A SS-DNA binding protein 99.8 3.5E-20 1.2E-24 139.1 4.4 82 7-89 2-83 (90)
105 2ad9_A Polypyrimidine tract-bi 99.8 3.2E-19 1.1E-23 142.3 10.3 82 3-90 28-111 (119)
106 2lcw_A RNA-binding protein FUS 99.7 6E-21 2E-25 150.3 0.0 87 3-89 4-98 (116)
107 1fj7_A Nucleolin RBD1, protein 99.8 3.2E-20 1.1E-24 142.4 4.0 84 4-89 15-98 (101)
108 2nlw_A Eukaryotic translation 99.8 3.6E-19 1.2E-23 138.0 10.0 81 4-86 13-100 (105)
109 2db1_A Heterogeneous nuclear r 99.8 1.1E-19 3.8E-24 144.1 7.1 82 4-87 15-99 (118)
110 1wel_A RNA-binding protein 12; 99.8 3.5E-20 1.2E-24 147.8 4.0 84 3-87 22-105 (124)
111 3beg_B Splicing factor, argini 99.8 2.5E-19 8.7E-24 141.3 8.5 79 4-89 14-97 (115)
112 1wex_A Hypothetical protein (r 99.8 9E-19 3.1E-23 136.4 11.5 82 3-90 12-95 (104)
113 2e5j_A Methenyltetrahydrofolat 99.8 4E-19 1.4E-23 135.5 9.3 80 4-88 17-96 (97)
114 2hgn_A Heterogeneous nuclear r 99.8 4E-20 1.4E-24 151.4 3.9 82 4-88 44-125 (139)
115 2hvz_A Splicing factor, argini 99.8 4.7E-19 1.6E-23 135.8 9.4 78 7-89 1-78 (101)
116 2cqh_A IGF-II mRNA-binding pro 99.8 4.2E-19 1.4E-23 134.1 9.0 81 2-89 4-86 (93)
117 2cpj_A Non-POU domain-containi 99.8 7.9E-19 2.7E-23 134.2 10.3 80 4-89 13-92 (99)
118 2wbr_A GW182, gawky, LD47780P; 99.8 8.6E-19 2.9E-23 132.3 10.3 75 4-84 5-79 (89)
119 2cpd_A Apobec-1 stimulating pr 99.8 2.1E-18 7.4E-23 131.8 12.8 78 4-89 13-92 (99)
120 1nu4_A U1A RNA binding domain; 99.8 3E-19 1E-23 135.7 7.8 85 1-88 3-91 (97)
121 2hgl_A HNRPF protein, heteroge 99.8 1.8E-19 6E-24 147.0 6.7 81 4-86 42-125 (136)
122 2jvr_A Nucleolar protein 3; RN 99.8 5.3E-19 1.8E-23 139.3 9.1 80 4-87 26-106 (111)
123 2dnn_A RNA-binding protein 12; 99.8 2.6E-19 9E-24 140.6 7.2 78 6-86 16-93 (109)
124 2la4_A Nuclear and cytoplasmic 99.8 5.8E-19 2E-23 135.3 8.9 77 4-86 25-101 (101)
125 1wf1_A RNA-binding protein RAL 99.8 1.3E-18 4.5E-23 135.6 10.8 76 5-88 26-102 (110)
126 2e5g_A U6 snRNA-specific termi 99.8 1.6E-18 5.5E-23 131.4 10.9 82 3-90 5-86 (94)
127 3lqv_A PRE-mRNA branch site pr 99.8 9.4E-19 3.2E-23 137.2 9.6 84 1-87 3-86 (115)
128 2f3j_A RNA and export factor b 99.8 5.9E-19 2E-23 149.8 9.0 83 4-87 86-168 (177)
129 2jvo_A Nucleolar protein 3; nu 99.8 1.4E-18 4.9E-23 135.6 10.3 79 3-89 28-106 (108)
130 1fjc_A Nucleolin RBD2, protein 99.8 5.8E-19 2E-23 134.0 7.6 81 3-88 13-93 (96)
131 4f02_A Polyadenylate-binding p 99.8 1.9E-18 6.5E-23 149.7 11.8 85 3-87 12-96 (213)
132 2a3j_A U1 small nuclear ribonu 99.8 1.4E-18 4.9E-23 140.0 10.3 83 3-88 26-112 (127)
133 2ytc_A PRE-mRNA-splicing facto 99.8 1.7E-18 5.9E-23 128.3 9.8 76 3-84 9-85 (85)
134 2xnq_A Nuclear polyadenylated 99.8 3.6E-18 1.2E-22 130.7 11.6 77 3-87 19-96 (97)
135 2kvi_A Nuclear polyadenylated 99.8 8.2E-19 2.8E-23 133.6 7.9 79 3-89 7-86 (96)
136 2krb_A Eukaryotic translation 99.8 4.5E-19 1.5E-23 130.8 6.1 74 6-81 1-81 (81)
137 1iqt_A AUF1, heterogeneous nuc 99.8 3.2E-19 1.1E-23 129.2 5.1 75 8-83 1-75 (75)
138 1x5p_A Negative elongation fac 99.8 8.1E-18 2.8E-22 128.2 13.0 79 4-90 13-91 (97)
139 2lmi_A GRSF-1, G-rich sequence 99.8 1.9E-19 6.5E-24 140.1 3.6 83 3-87 8-93 (107)
140 2xs2_A Deleted in azoospermia- 99.8 7.7E-19 2.6E-23 134.8 6.6 83 4-89 7-89 (102)
141 2e44_A Insulin-like growth fac 99.8 2E-18 7E-23 130.9 8.8 80 4-87 13-93 (96)
142 1x4f_A Matrin 3; structural ge 99.8 1.2E-18 4E-23 137.7 7.5 82 3-90 22-106 (112)
143 2dha_A FLJ20171 protein; RRM d 99.8 3.4E-19 1.2E-23 142.9 4.5 82 3-86 20-105 (123)
144 1fxl_A Paraneoplastic encephal 99.7 7.1E-18 2.4E-22 138.3 11.9 84 5-88 1-84 (167)
145 3md3_A Nuclear and cytoplasmic 99.7 8.1E-18 2.8E-22 137.8 11.9 83 3-85 84-166 (166)
146 1wg1_A KIAA1579 protein, homol 99.7 3.4E-18 1.2E-22 128.2 8.7 77 4-87 3-79 (88)
147 1b7f_A Protein (SXL-lethal pro 99.7 5.3E-18 1.8E-22 139.6 10.6 84 5-88 2-85 (168)
148 2i2y_A Fusion protein consists 99.7 3.9E-18 1.3E-22 140.0 9.5 79 4-87 71-149 (150)
149 3egn_A RNA-binding protein 40; 99.7 9.6E-19 3.3E-23 142.5 5.3 87 3-89 42-133 (143)
150 1whx_A Hypothetical protein ri 99.7 2.4E-18 8.2E-23 134.9 7.4 77 5-87 9-85 (111)
151 2qfj_A FBP-interacting repress 99.7 1.1E-17 3.6E-22 143.5 11.9 87 4-90 123-209 (216)
152 2hgm_A HNRPF protein, heteroge 99.7 1.6E-18 5.4E-23 139.6 6.3 80 4-86 40-121 (126)
153 2yh0_A Splicing factor U2AF 65 99.7 1.6E-17 5.6E-22 140.4 12.0 85 4-88 112-196 (198)
154 1l3k_A Heterogeneous nuclear r 99.7 1.1E-17 3.7E-22 141.3 10.8 85 5-90 103-187 (196)
155 1wf0_A TDP-43, TAR DNA-binding 99.7 4.5E-18 1.5E-22 127.2 7.4 81 3-90 2-82 (88)
156 3d2w_A TAR DNA-binding protein 99.7 6.8E-18 2.3E-22 127.3 8.3 78 2-88 7-86 (89)
157 2cq2_A Hypothetical protein LO 99.7 1E-17 3.5E-22 132.6 9.5 81 2-88 21-108 (114)
158 2dnl_A Cytoplasmic polyadenyla 99.7 9.7E-18 3.3E-22 131.8 8.1 79 3-84 5-86 (114)
159 1sjr_A Polypyrimidine tract-bi 99.7 2.5E-17 8.7E-22 138.1 10.9 78 6-87 46-125 (164)
160 1l3k_A Heterogeneous nuclear r 99.7 2.5E-17 8.5E-22 139.1 10.9 84 4-88 11-94 (196)
161 2g4b_A Splicing factor U2AF 65 99.7 2.7E-17 9.3E-22 136.0 10.9 80 5-84 93-172 (172)
162 2cjk_A Nuclear polyadenylated 99.7 9.5E-18 3.3E-22 138.1 7.7 82 5-87 86-167 (167)
163 4f02_A Polyadenylate-binding p 99.7 2.4E-17 8.2E-22 142.7 10.2 82 5-88 102-183 (213)
164 3zzy_A Polypyrimidine tract-bi 99.7 5E-17 1.7E-21 131.4 11.3 79 5-88 27-108 (130)
165 2hzc_A Splicing factor U2AF 65 99.7 3.2E-17 1.1E-21 121.7 8.8 74 2-82 2-86 (87)
166 2j8a_A Histone-lysine N-methyl 99.7 3.1E-17 1.1E-21 132.0 8.5 78 7-84 3-94 (136)
167 2qfj_A FBP-interacting repress 99.7 4.9E-17 1.7E-21 139.3 10.1 83 5-87 27-109 (216)
168 2e5i_A Heterogeneous nuclear r 99.7 8.7E-17 3E-21 129.1 10.9 75 8-88 27-104 (124)
169 3md3_A Nuclear and cytoplasmic 99.7 8.9E-17 3.1E-21 131.6 10.3 81 7-88 1-81 (166)
170 1b7f_A Protein (SXL-lethal pro 99.7 1E-16 3.5E-21 131.8 10.6 80 4-83 87-168 (168)
171 2bz2_A Negative elongation fac 99.7 6.9E-17 2.4E-21 128.8 9.2 78 4-89 37-114 (121)
172 2pe8_A Splicing factor 45; RRM 99.7 1.4E-16 4.7E-21 124.2 10.4 84 2-85 4-93 (105)
173 3nmr_A Cugbp ELAV-like family 99.7 8.4E-17 2.9E-21 133.0 9.7 84 5-88 2-90 (175)
174 3tyt_A Heterogeneous nuclear r 99.7 1.5E-16 5E-21 137.8 10.6 79 4-87 2-81 (205)
175 2diu_A KIAA0430 protein; struc 99.7 1.5E-16 5.1E-21 121.3 9.1 76 4-89 6-87 (96)
176 2cjk_A Nuclear polyadenylated 99.7 9.7E-17 3.3E-21 132.1 8.5 81 4-86 1-81 (167)
177 1fxl_A Paraneoplastic encephal 99.7 2.2E-16 7.5E-21 129.3 10.4 79 5-83 87-167 (167)
178 3nmr_A Cugbp ELAV-like family 99.7 2.1E-16 7.2E-21 130.6 10.0 79 5-84 94-175 (175)
179 1fje_B Nucleolin RBD12, protei 99.7 1.9E-16 6.4E-21 131.7 9.7 78 5-87 98-175 (175)
180 3pgw_A U1-A; protein-RNA compl 99.7 3.4E-16 1.2E-20 140.2 11.4 82 3-87 6-91 (282)
181 2ghp_A U4/U6 snRNA-associated 99.6 4.6E-16 1.6E-20 140.0 10.2 83 4-87 208-292 (292)
182 3u1l_A PRE-mRNA-splicing facto 99.6 3.6E-16 1.2E-20 138.8 9.2 79 4-88 132-231 (240)
183 2adc_A Polypyrimidine tract-bi 99.6 5.7E-16 2E-20 135.4 9.3 80 3-87 31-111 (229)
184 2voo_A Lupus LA protein; RNA-b 99.6 1.2E-15 4.2E-20 130.9 10.5 79 6-86 109-187 (193)
185 2dit_A HIV TAT specific factor 99.6 3.3E-15 1.1E-19 116.9 12.0 82 3-88 12-104 (112)
186 3smz_A Protein raver-1, ribonu 99.6 2.4E-15 8.2E-20 134.8 11.7 85 4-88 93-177 (284)
187 1fje_B Nucleolin RBD12, protei 99.6 2.6E-16 9E-21 130.8 4.9 84 3-88 10-93 (175)
188 3smz_A Protein raver-1, ribonu 99.6 2.2E-15 7.4E-20 135.1 10.4 84 4-88 182-266 (284)
189 3pgw_A U1-A; protein-RNA compl 99.6 2.9E-15 9.8E-20 134.1 11.1 75 5-84 206-281 (282)
190 1qm9_A Polypyrimidine tract-bi 99.6 1.4E-15 4.6E-20 129.2 7.0 78 5-87 2-80 (198)
191 3tyt_A Heterogeneous nuclear r 99.6 2.8E-15 9.7E-20 129.7 7.9 77 5-83 122-204 (205)
192 3v4m_A Splicing factor U2AF 65 99.6 8E-15 2.8E-19 114.0 9.4 82 4-85 3-96 (105)
193 1qm9_A Polypyrimidine tract-bi 99.6 3.6E-15 1.2E-19 126.5 8.0 77 5-86 119-197 (198)
194 2adc_A Polypyrimidine tract-bi 99.6 8.1E-15 2.8E-19 128.1 9.9 77 5-86 150-228 (229)
195 2g4b_A Splicing factor U2AF 65 99.6 1.2E-14 4.2E-19 119.9 10.1 77 4-87 2-89 (172)
196 3sde_A Paraspeckle component 1 99.6 1.5E-14 5.1E-19 128.9 10.8 84 4-88 94-181 (261)
197 2ghp_A U4/U6 snRNA-associated 99.5 9.9E-15 3.4E-19 131.2 9.4 84 5-89 116-200 (292)
198 3sde_A Paraspeckle component 1 99.5 1E-14 3.6E-19 129.9 9.4 76 4-85 20-95 (261)
199 2yh0_A Splicing factor U2AF 65 99.5 2.2E-14 7.4E-19 121.1 10.4 78 4-88 2-90 (198)
200 1jmt_A Splicing factor U2AF 35 99.5 4.5E-15 1.5E-19 115.3 5.4 72 11-83 20-103 (104)
201 3ue2_A Poly(U)-binding-splicin 99.5 8.6E-15 2.9E-19 116.4 7.0 82 4-85 18-108 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 8.1E-14 2.8E-18 107.6 11.6 79 5-90 9-94 (100)
203 3tht_A Alkylated DNA repair pr 99.5 3.5E-14 1.2E-18 132.1 9.2 77 2-84 14-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 1.8E-12 6.1E-17 102.3 9.5 79 2-84 3-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 7.6E-12 2.6E-16 99.7 8.9 76 3-84 15-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 7.4E-12 2.5E-16 94.5 7.9 74 4-86 5-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 9E-11 3.1E-15 89.0 7.4 73 4-85 13-94 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 1.2E-09 4.1E-14 94.6 7.8 68 18-85 141-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.6 2.4E-07 8.2E-12 71.8 9.2 72 4-81 19-95 (117)
210 1wey_A Calcipressin 1; structu 98.3 2.7E-06 9.4E-11 65.4 7.9 78 4-87 3-85 (104)
211 2dhx_A Poly (ADP-ribose) polym 98.1 1.9E-05 6.4E-10 60.6 10.2 76 4-88 6-86 (104)
212 1uw4_A UPF3X; nonsense mediate 98.0 5E-05 1.7E-09 57.1 9.5 78 7-84 2-86 (91)
213 1whv_A Poly(A)-specific ribonu 97.9 3.7E-05 1.3E-09 58.3 7.0 55 6-69 16-70 (100)
214 3ctr_A Poly(A)-specific ribonu 97.7 3.7E-05 1.3E-09 58.5 5.4 55 6-69 6-60 (101)
215 1wwh_A Nucleoporin 35, nucleop 97.7 0.00023 8E-09 55.9 9.2 71 5-83 23-94 (119)
216 2l08_A Regulator of nonsense t 97.4 0.00024 8.2E-09 53.9 5.5 80 5-84 8-94 (97)
217 3p3d_A Nucleoporin 53; structu 97.1 0.00054 1.8E-08 54.7 4.9 79 4-84 5-97 (132)
218 2kn4_A Immunoglobulin G-bindin 96.8 0.0013 4.5E-08 53.0 5.0 43 35-79 2-44 (158)
219 3pq1_A Poly(A) RNA polymerase; 96.6 0.00091 3.1E-08 64.2 3.1 56 6-67 53-108 (464)
220 2i2y_A Fusion protein consists 96.4 0.0015 5.1E-08 52.4 2.6 41 45-86 10-51 (150)
221 3d45_A Poly(A)-specific ribonu 94.4 0.077 2.6E-06 51.4 7.3 55 6-69 440-494 (507)
222 3ts2_A Protein LIN-28 homolog 92.3 0.0044 1.5E-07 50.5 -4.5 28 21-56 2-29 (148)
223 2g0c_A ATP-dependent RNA helic 92.1 0.33 1.1E-05 34.1 5.8 68 8-84 2-75 (76)
224 1a6b_B Momulv, zinc finger pro 90.2 0.16 5.4E-06 31.9 2.1 21 117-137 10-30 (40)
225 4eyt_A Telomerase associated p 89.9 4.3 0.00015 30.1 10.1 73 4-84 10-89 (129)
226 1dsq_A Nucleic acid binding pr 89.7 0.18 6.3E-06 28.4 2.0 19 118-136 3-21 (26)
227 1u6p_A GAG polyprotein; MLV, A 86.7 0.2 6.9E-06 33.8 1.0 22 115-136 21-42 (56)
228 2ysa_A Retinoblastoma-binding 81.0 0.85 2.9E-05 30.6 2.2 19 117-135 7-25 (55)
229 3fry_A Probable copper-exporti 79.8 3.9 0.00013 27.5 5.5 57 5-68 5-61 (73)
230 1q8l_A Copper-transporting ATP 72.9 17 0.00059 24.6 7.5 59 4-68 8-70 (84)
231 3dxs_X Copper-transporting ATP 72.2 17 0.0006 23.9 7.2 56 7-68 4-63 (74)
232 1nc8_A Nucleocapsid protein; H 71.5 1.2 4.2E-05 25.5 0.8 19 118-136 7-25 (29)
233 1kvi_A Copper-transporting ATP 67.7 23 0.00078 23.3 7.0 57 6-68 9-69 (79)
234 4a4j_A Pacszia, cation-transpo 67.4 16 0.00054 23.7 6.0 56 6-67 3-61 (69)
235 3pgw_S U1-70K; protein-RNA com 67.3 0.39 1.3E-05 45.4 -3.2 15 23-37 9-23 (437)
236 2cu1_A Mitogen-activated prote 67.2 7 0.00024 29.3 4.3 66 13-87 23-89 (103)
237 1opz_A Potential copper-transp 67.1 22 0.00076 22.8 8.2 58 5-68 6-67 (76)
238 2lfv_A Protein DAMX; cell divi 68.7 1.3 4.6E-05 33.6 0.0 56 14-71 30-87 (106)
239 1tr0_A Stable protein 1; plant 63.6 32 0.0011 25.3 7.6 56 8-63 11-79 (108)
240 1yg0_A COP associated protein; 62.9 25 0.00084 21.9 6.8 55 8-68 4-61 (66)
241 1yjr_A Copper-transporting ATP 62.9 27 0.00094 22.4 8.2 47 5-57 4-50 (75)
242 2kt2_A Mercuric reductase; nme 61.1 28 0.00097 22.0 6.3 54 8-67 3-59 (69)
243 2npt_B Mitogen-activated prote 59.5 31 0.0011 25.5 6.5 62 13-83 35-97 (100)
244 2g9o_A Copper-transporting ATP 58.8 21 0.00071 24.9 5.6 57 6-68 4-64 (90)
245 2xmw_A PACS-N, cation-transpor 58.0 32 0.0011 21.6 7.4 57 6-68 4-63 (71)
246 1vd2_A Protein kinase C, IOTA 56.7 37 0.0013 24.7 6.6 54 9-69 17-75 (89)
247 2jrh_A Mitogen-activated prote 56.3 34 0.0012 25.0 6.2 65 13-86 19-84 (94)
248 1cc8_A Protein (metallochapero 56.2 39 0.0013 22.1 6.8 57 5-68 5-63 (73)
249 3lpe_A Putative transcription 56.0 27 0.00093 25.3 5.9 35 32-71 39-73 (92)
250 1cl4_A Protein (GAG polyprotei 55.2 6.8 0.00023 26.1 2.2 21 117-137 30-50 (60)
251 2ofg_X Zinc-transporting ATPas 55.2 56 0.0019 23.7 7.8 56 7-68 10-69 (111)
252 4e8u_A Putative uncharacterize 54.4 33 0.0011 28.2 6.6 56 7-65 13-80 (172)
253 1mwy_A ZNTA; open-faced beta-s 54.4 40 0.0014 21.7 8.0 57 6-68 4-62 (73)
254 1cpz_A Protein (COPZ); copper 53.8 37 0.0013 21.1 8.2 55 7-67 2-60 (68)
255 2l3m_A Copper-ION-binding prot 53.4 40 0.0014 21.3 7.0 57 6-68 6-66 (71)
256 2c60_A Human mitogen-activated 53.4 27 0.00094 26.2 5.4 62 13-83 46-108 (111)
257 3bb5_A Stress responsive alpha 53.3 70 0.0024 24.1 8.9 56 8-63 23-89 (121)
258 2qyc_A Ferredoxin-like protein 53.0 57 0.0019 23.6 7.4 54 9-63 8-71 (103)
259 3cjk_B Copper-transporting ATP 52.7 43 0.0015 21.5 7.5 56 7-68 4-63 (75)
260 1q4r_A Protein AT3G17210; cent 51.6 68 0.0023 23.6 7.7 56 8-63 13-79 (112)
261 1aw0_A Menkes copper-transport 51.4 35 0.0012 21.6 5.5 56 7-68 5-64 (72)
262 2ihx_A Nucleocapsid (NC) prote 51.2 5.6 0.00019 26.7 1.3 21 118-138 31-51 (61)
263 1osd_A MERP, hypothetical prot 51.2 44 0.0015 21.1 7.7 56 7-68 5-64 (72)
264 1y3j_A Copper-transporting ATP 49.6 36 0.0012 22.2 5.4 56 7-68 5-64 (77)
265 3bgu_A Ferredoxin-like protein 49.5 48 0.0016 24.9 6.6 54 9-63 25-88 (116)
266 2a51_A Nucleocapsid protein; s 48.1 9.7 0.00033 23.0 1.9 17 118-134 22-38 (39)
267 3h7h_B Transcription elongatio 47.7 35 0.0012 25.6 5.4 36 32-72 40-75 (106)
268 1p6t_A Potential copper-transp 47.6 67 0.0023 24.0 7.4 55 8-68 77-135 (151)
269 3uzu_A Ribosomal RNA small sub 46.2 7.7 0.00026 34.1 1.7 36 7-42 115-150 (279)
270 2cfx_A HTH-type transcriptiona 46.0 95 0.0032 23.6 8.1 52 14-70 73-124 (144)
271 3bde_A MLL5499 protein; stress 45.7 60 0.002 24.6 6.6 55 9-63 24-86 (120)
272 1fvq_A Copper-transporting ATP 45.6 55 0.0019 20.6 6.2 56 7-68 4-62 (72)
273 3nyb_B Protein AIR2; polya RNA 45.3 8.4 0.00029 27.8 1.5 20 118-137 47-66 (83)
274 2bl6_A Nucleocapsid protein P1 45.1 10 0.00034 22.6 1.6 17 119-135 2-18 (37)
275 2kyz_A Heavy metal binding pro 44.8 31 0.0011 21.9 4.3 52 8-66 4-55 (67)
276 2ec7_A GAG polyprotein (PR55GA 44.3 11 0.00037 24.1 1.8 19 118-136 7-25 (49)
277 2ew9_A Copper-transporting ATP 43.5 60 0.002 24.1 6.4 56 7-68 82-141 (149)
278 2w7a_A LINE-1 ORF1P; RNA-bindi 42.8 54 0.0019 24.4 5.7 76 6-81 3-98 (100)
279 4bby_A Alkyldihydroxyacetoneph 42.7 19 0.00064 35.6 4.0 57 13-70 350-410 (658)
280 2k2p_A Uncharacterized protein 41.6 37 0.0013 23.5 4.6 57 6-68 23-80 (85)
281 3fut_A Dimethyladenosine trans 41.2 16 0.00055 31.9 3.0 35 6-41 110-144 (271)
282 2crl_A Copper chaperone for su 41.1 52 0.0018 23.4 5.4 53 8-67 22-75 (98)
283 4hhu_A OR280; engineered prote 40.6 1.2E+02 0.0042 23.3 7.9 72 7-83 43-129 (170)
284 2qif_A Copper chaperone COPZ; 40.5 61 0.0021 19.7 7.4 55 7-67 4-62 (69)
285 2j5a_A 30S ribosomal protein S 39.0 80 0.0027 23.5 6.3 56 8-65 12-82 (110)
286 2cqf_A RNA-binding protein LIN 39.0 28 0.00095 23.4 3.3 18 118-135 8-25 (63)
287 3bn7_A Ferredoxin-like protein 38.3 98 0.0034 23.2 6.8 55 9-63 24-91 (120)
288 3ced_A Methionine import ATP-b 37.8 46 0.0016 24.2 4.7 61 8-70 22-87 (98)
289 2li8_A Protein LIN-28 homolog 36.9 17 0.00057 25.5 1.9 20 117-136 24-43 (74)
290 3fmb_A Dimeric protein of unkn 36.4 96 0.0033 23.3 6.4 56 8-63 23-90 (118)
291 2ldi_A Zinc-transporting ATPas 36.1 76 0.0026 19.5 6.5 55 7-67 5-63 (71)
292 2i9x_A Putative septation prot 35.8 39 0.0013 24.5 3.8 26 32-57 5-30 (87)
293 2kpo_A Rossmann 2X2 fold prote 35.6 35 0.0012 24.5 3.4 50 18-80 33-83 (110)
294 1qyr_A KSGA, high level kasuga 35.2 26 0.00089 30.0 3.3 34 7-40 91-124 (252)
295 1jww_A Potential copper-transp 34.8 87 0.003 20.1 5.5 56 7-68 5-64 (80)
296 3iwl_A Copper transport protei 34.7 91 0.0031 20.0 6.4 54 6-67 3-57 (68)
297 1xn9_A 30S ribosomal protein S 33.7 92 0.0032 23.1 5.7 48 16-64 28-80 (101)
298 3tqs_A Ribosomal RNA small sub 33.4 17 0.00057 31.4 1.8 35 8-42 98-132 (255)
299 1x60_A Sporulation-specific N- 33.4 77 0.0026 21.5 5.1 64 5-73 8-71 (79)
300 1a1t_A Nucleocapsid protein; s 33.3 13 0.00044 24.2 0.8 19 118-136 34-52 (55)
301 1wrm_A Dual specificity phosph 33.2 1.1E+02 0.0036 23.8 6.5 72 8-84 13-92 (165)
302 2rop_A Copper-transporting ATP 32.5 1.7E+02 0.0059 23.2 7.9 56 7-68 124-183 (202)
303 1mli_A Muconolactone isomerase 32.1 1.5E+02 0.0052 21.8 8.2 64 12-81 9-82 (96)
304 2yko_A LINE-1 ORF1P; RNA-bindi 31.8 1E+02 0.0035 26.4 6.4 77 6-82 52-148 (233)
305 3j21_T 50S ribosomal protein L 31.4 97 0.0033 22.3 5.4 56 9-67 25-82 (86)
306 1i4w_A Mitochondrial replicati 31.0 23 0.00078 32.3 2.4 22 8-29 144-165 (353)
307 2e7g_A Putative ribosome-bindi 30.8 82 0.0028 24.2 5.3 36 30-69 43-79 (129)
308 2kkh_A Putative heavy metal tr 29.9 1.3E+02 0.0046 20.5 8.7 56 7-68 18-77 (95)
309 2v94_A RPS24, 30S ribosomal pr 29.9 1E+02 0.0035 23.1 5.5 48 16-64 37-89 (107)
310 2ko1_A CTR148A, GTP pyrophosph 29.9 1.3E+02 0.0044 20.2 7.2 50 19-70 18-68 (88)
311 2ia9_A Putative septation prot 29.5 55 0.0019 24.3 3.8 26 32-57 5-30 (100)
312 1cqm_A Ribosomal protein S6; a 29.4 96 0.0033 22.6 5.2 55 8-65 6-75 (101)
313 3ftd_A Dimethyladenosine trans 29.3 23 0.00079 30.3 2.0 34 7-40 96-129 (249)
314 3ts2_A Protein LIN-28 homolog 29.0 18 0.00062 28.8 1.1 20 117-136 119-138 (148)
315 1wvf_A 4-cresol dehydrogenase 28.9 39 0.0013 32.1 3.7 44 22-66 217-262 (520)
316 2i9z_A Putative septation prot 28.4 60 0.0021 24.4 3.9 26 32-57 5-30 (105)
317 2d8m_A DNA-repair protein XRCC 28.2 66 0.0022 24.4 4.3 29 5-34 24-52 (129)
318 3d53_A Inorganic pyrophosphata 27.8 79 0.0027 25.8 4.8 39 20-69 132-170 (173)
319 1ywx_A 30S ribosomal protein S 27.3 1.9E+02 0.0065 21.4 6.9 48 16-64 28-80 (102)
320 2uuu_A Alkyldihydroxyacetoneph 27.2 37 0.0012 33.1 3.2 55 14-69 281-339 (584)
321 2xmm_A SSR2857 protein, ATX1; 26.2 1.1E+02 0.0038 18.4 5.3 54 8-67 4-58 (64)
322 2exu_A Transcription initiatio 26.0 85 0.0029 26.3 4.8 27 47-73 148-174 (200)
323 3rgo_A Protein-tyrosine phosph 25.7 2E+02 0.0067 21.6 6.8 74 6-83 6-97 (157)
324 3ilw_A DNA gyrase subunit A; D 25.5 95 0.0032 29.5 5.6 63 5-68 235-301 (470)
325 2lli_A Protein AIR2; RNA surve 25.3 34 0.0012 25.9 2.1 19 117-135 105-123 (124)
326 3off_A LDLR chaperone BOCA; ME 25.2 2E+02 0.0068 20.9 7.4 54 8-70 13-74 (90)
327 2lsl_A Telomerase associated p 31.0 15 0.00052 27.4 0.0 83 4-86 16-122 (137)
328 3bbn_F Ribosomal protein S6; s 24.9 63 0.0022 26.3 3.7 28 8-37 67-102 (168)
329 1wj6_A KIAA0049 protein, RSGI 24.7 71 0.0024 23.8 3.6 62 14-84 32-94 (101)
330 3u5c_Y RP50, 40S ribosomal pro 24.7 1.7E+02 0.0057 22.9 6.0 48 16-64 33-85 (135)
331 1rjj_A Expressed protein; beta 24.1 2.1E+02 0.0071 20.7 7.2 75 8-84 8-100 (111)
332 3pm9_A Putative oxidoreductase 24.0 49 0.0017 31.2 3.4 55 14-69 194-252 (476)
333 2gu3_A YPMB protein; APC1927, 23.7 62 0.0021 25.2 3.4 48 11-58 68-128 (136)
334 3rfw_A Cell-binding factor 2; 23.6 82 0.0028 26.4 4.5 45 16-69 89-134 (252)
335 1rxd_A Protein tyrosine phosph 23.1 2.4E+02 0.0081 21.0 8.6 78 6-84 15-105 (159)
336 2qrr_A Methionine import ATP-b 23.0 1.5E+02 0.0052 21.2 5.3 63 8-70 25-89 (101)
337 2cg4_A Regulatory protein ASNC 22.9 2.5E+02 0.0085 21.2 7.5 52 14-69 76-128 (152)
338 2ns6_A Mobilization protein A; 22.2 1.8E+02 0.0061 23.8 6.1 50 7-59 71-128 (185)
339 2e5p_A Protein PHF1, PHD finge 21.7 31 0.001 23.8 1.0 12 48-59 37-48 (68)
340 2xzm_P RPS24E; ribosome, trans 21.6 1.7E+02 0.0059 23.3 5.6 48 16-64 31-83 (149)
341 1x8d_A Hypothetical protein YI 21.5 1.7E+02 0.0057 21.6 5.3 34 21-57 27-60 (104)
342 2qsw_A Methionine import ATP-b 20.9 1.1E+02 0.0038 21.9 4.2 63 8-70 25-89 (100)
343 2inr_A DNA topoisomerase 4 sub 20.6 1.3E+02 0.0044 28.9 5.5 63 6-70 275-341 (514)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=9.1e-23 Score=157.32 Aligned_cols=81 Identities=23% Similarity=0.535 Sum_probs=78.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecC
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 84 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~ 84 (280)
+.++|||+|||+++||++|+++|++||+|++|+|++++.|++++|||||+|++.++|++||+.||++.|.+++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 023559 85 P 85 (280)
Q Consensus 85 ~ 85 (280)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 7
No 2
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.88 E-value=1.8e-22 Score=167.04 Aligned_cols=87 Identities=28% Similarity=0.476 Sum_probs=82.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||++||+++|+++|++||+|+.|.|+.++.|+++++||||+|+++++|++||+.||+++|.+++|+|++|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 023559 84 QPKMGGE 90 (280)
Q Consensus 84 ~~k~~~~ 90 (280)
+++....
T Consensus 117 ~~~~~~~ 123 (156)
T 1h2v_Z 117 AGFKEGR 123 (156)
T ss_dssp SCCCTTC
T ss_pred CCCCCcC
Confidence 9876543
No 3
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=8.7e-22 Score=149.22 Aligned_cols=87 Identities=32% Similarity=0.685 Sum_probs=83.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|++.++|++||+.||++.|.+++|+|++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023559 83 AQPKMGG 89 (280)
Q Consensus 83 a~~k~~~ 89 (280)
++++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9987654
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.87 E-value=7.7e-22 Score=155.11 Aligned_cols=85 Identities=15% Similarity=0.277 Sum_probs=81.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++||++|+++|++||+|++|.|+.++.|++++|||||+|++.++|++||+.||+++|.+++|+|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023559 83 AQPKM 87 (280)
Q Consensus 83 a~~k~ 87 (280)
|..+.
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 97553
No 5
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=2.2e-21 Score=148.28 Aligned_cols=88 Identities=26% Similarity=0.478 Sum_probs=83.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|++.++|++||+.||++.|.+++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46789999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
++++....
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 99887643
No 6
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-21 Score=150.85 Aligned_cols=88 Identities=26% Similarity=0.477 Sum_probs=83.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||++.|.+++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
++++....
T Consensus 92 a~~~~~~~ 99 (103)
T 2cq0_A 92 AKPSTNSG 99 (103)
T ss_dssp SSCCCCSC
T ss_pred CCCCCCCC
Confidence 99886543
No 7
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=1.5e-21 Score=153.42 Aligned_cols=88 Identities=20% Similarity=0.493 Sum_probs=83.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||.|+.|+|+.++.++++++||||+|++.++|++||+.||++.|.+++|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
++++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpz_A 102 KRSKNDSK 109 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCcCC
Confidence 99886654
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=145.56 Aligned_cols=85 Identities=29% Similarity=0.571 Sum_probs=77.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++++++|+++|++||.|++|.|+.++.++++++||||+|++.++|++||+.||++.|.++.|+|++
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023559 83 AQPKM 87 (280)
Q Consensus 83 a~~k~ 87 (280)
|++++
T Consensus 83 a~~kp 87 (87)
T 3bs9_A 83 ATRKP 87 (87)
T ss_dssp EC---
T ss_pred cCCCC
Confidence 98763
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=148.64 Aligned_cols=87 Identities=36% Similarity=0.747 Sum_probs=82.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+ ||++.|.+++|+|++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4678999999999999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
++++....
T Consensus 86 a~~~~~~~ 93 (99)
T 2dgs_A 86 AEPRDSKS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCcccC
Confidence 99887654
No 10
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-21 Score=150.48 Aligned_cols=88 Identities=35% Similarity=0.719 Sum_probs=83.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||++.|.+++|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
++++....
T Consensus 89 a~~~~~~~ 96 (102)
T 1x5s_A 89 AGKSSDNR 96 (102)
T ss_dssp EECCCCCC
T ss_pred CCCCCCCC
Confidence 99876543
No 11
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2e-21 Score=150.09 Aligned_cols=88 Identities=22% Similarity=0.456 Sum_probs=82.3
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCC-CCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEE
Q 023559 1 MAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDS-GRPRGFGFITYADRRAMDDAIREMHGREFGDRVIS 79 (280)
Q Consensus 1 m~~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~t-g~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~ 79 (280)
++..+.++|||+|||++||+++|+++|++|| |+.|.|+.++.| +++++||||+|+++++|++|| .||+++|.+++|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3456789999999999999999999999999 999999999988 899999999999999999999 9999999999999
Q ss_pred EEecCCCCCCC
Q 023559 80 VNKAQPKMGGE 90 (280)
Q Consensus 80 V~~a~~k~~~~ 90 (280)
|++++++....
T Consensus 88 V~~a~~~~~~~ 98 (104)
T 1wi8_A 88 VDVADQAQDKD 98 (104)
T ss_dssp EEECCCCCCCC
T ss_pred EEEccCCCCCC
Confidence 99999887654
No 12
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.86 E-value=3.7e-22 Score=151.41 Aligned_cols=84 Identities=19% Similarity=0.341 Sum_probs=78.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcC-CeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhc-CceeCCeEEEEEec
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFG-KIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMH-GREFGDRVISVNKA 83 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~ln-g~~l~gr~I~V~~a 83 (280)
+++|||.|||+++||++|+++|++|| +|++|+|++++.|++++|||||+|+++++|++||+.|+ .+.|.+++|.|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 89999999999999999999999999999999998874 56799999999999
Q ss_pred CCCCCC
Q 023559 84 QPKMGG 89 (280)
Q Consensus 84 ~~k~~~ 89 (280)
+|+...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 987654
No 13
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.5e-21 Score=148.25 Aligned_cols=88 Identities=33% Similarity=0.563 Sum_probs=83.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEE-EEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIEC-QIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v-~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
..+.++|||+|||+++|+++|+++|++||.|+.| .|+.++.++++++||||+|+++++|++||+.||++.|.+++|+|+
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4578999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 023559 82 KAQPKMGGE 90 (280)
Q Consensus 82 ~a~~k~~~~ 90 (280)
+++++....
T Consensus 82 ~a~~~~~~~ 90 (96)
T 1x5t_A 82 YAFKKDSKG 90 (96)
T ss_dssp ESCCCCCCC
T ss_pred EecccCCCC
Confidence 999876543
No 14
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=150.39 Aligned_cols=88 Identities=26% Similarity=0.444 Sum_probs=82.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.|+++++||||+|+++++|++||+.||++.|.++.|+|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
|+++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2dnm_A 90 ARYGRRDL 97 (103)
T ss_dssp CSSCCSCC
T ss_pred CCcCCCCC
Confidence 99876543
No 15
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.4e-21 Score=150.07 Aligned_cols=88 Identities=33% Similarity=0.515 Sum_probs=83.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||++.|.+++|+|++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
++++....
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 99887654
No 16
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.2e-21 Score=149.83 Aligned_cols=88 Identities=26% Similarity=0.434 Sum_probs=83.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||+++|.+++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
|+++....
T Consensus 92 a~~~~~~~ 99 (105)
T 1x5u_A 92 ASAHNKNL 99 (105)
T ss_dssp TTTTSCCC
T ss_pred CCCCCcCC
Confidence 99876543
No 17
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=6e-21 Score=150.21 Aligned_cols=88 Identities=33% Similarity=0.570 Sum_probs=81.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 2 ~~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
++.+.++|||+|||+++|+++|+++|++||+|+.|+|+.++.|+++++||||+|+++++|++||+.|++ +|.+++|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 346789999999999999999999999999999999999999999999999999999999999999997 8999999999
Q ss_pred ecCCCCCCC
Q 023559 82 KAQPKMGGE 90 (280)
Q Consensus 82 ~a~~k~~~~ 90 (280)
+|+++....
T Consensus 92 ~a~~~~~~~ 100 (116)
T 2cqd_A 92 LAYLGAKPR 100 (116)
T ss_dssp ESTTTCCCC
T ss_pred EcccCCCcc
Confidence 998765443
No 18
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.85 E-value=1.4e-21 Score=155.86 Aligned_cols=88 Identities=20% Similarity=0.413 Sum_probs=82.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||++||+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+.||+++|.++.|+|++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
|+++....
T Consensus 99 a~~~~~~~ 106 (126)
T 3ex7_B 99 CFVRGPPK 106 (126)
T ss_dssp SEESSSCC
T ss_pred ecCCCCCC
Confidence 98876553
No 19
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=2.4e-21 Score=149.82 Aligned_cols=89 Identities=29% Similarity=0.548 Sum_probs=83.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcee---CCeEE
Q 023559 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREF---GDRVI 78 (280)
Q Consensus 2 ~~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l---~gr~I 78 (280)
+..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.|+++++||||+|++.++|++||+.||++.| .+++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 456789999999999999999999999999999999999999999999999999999999999999999988 89999
Q ss_pred EEEecCCCCCCC
Q 023559 79 SVNKAQPKMGGE 90 (280)
Q Consensus 79 ~V~~a~~k~~~~ 90 (280)
+|++++++....
T Consensus 89 ~v~~a~~~~~~~ 100 (106)
T 2dgp_A 89 QVKPADSESRGG 100 (106)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEECCcccccC
Confidence 999999876543
No 20
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=4.6e-21 Score=147.77 Aligned_cols=87 Identities=18% Similarity=0.484 Sum_probs=81.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 2 ~~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
+..+.++|||+|||++||+++|+++|++|+ |+.|.|+.++.|+++++||||+|+++++|++|| +||+++|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 456789999999999999999999999995 999999999999999999999999999999999 999999999999999
Q ss_pred ecCCCCCCC
Q 023559 82 KAQPKMGGE 90 (280)
Q Consensus 82 ~a~~k~~~~ 90 (280)
+++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2dng_A 89 IAEGRKQDK 97 (103)
T ss_dssp ECCCCCCCC
T ss_pred EecCCCCCC
Confidence 999876543
No 21
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=4.7e-21 Score=141.50 Aligned_cols=82 Identities=28% Similarity=0.592 Sum_probs=79.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecCC
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 85 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~~ 85 (280)
+++|||+|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.+++|+|++|++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 023559 86 KM 87 (280)
Q Consensus 86 k~ 87 (280)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 22
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3.1e-21 Score=147.12 Aligned_cols=88 Identities=20% Similarity=0.467 Sum_probs=82.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCC---CCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERD---SGRPRGFGFITYADRRAMDDAIREMHGREFGDRVIS 79 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~---tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~ 79 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++. |+++++||||+|.+.++|++||+.||++.|.+++|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35789999999999999999999999999999999999887 668999999999999999999999999999999999
Q ss_pred EEecCCCCCCC
Q 023559 80 VNKAQPKMGGE 90 (280)
Q Consensus 80 V~~a~~k~~~~ 90 (280)
|++++++....
T Consensus 82 V~~a~~~~~~~ 92 (98)
T 2cpf_A 82 VRISERATKPA 92 (98)
T ss_dssp EECSSCSSCCC
T ss_pred EEEccCCCCCC
Confidence 99999876544
No 23
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.2e-21 Score=148.53 Aligned_cols=87 Identities=29% Similarity=0.546 Sum_probs=81.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 2 ~~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
+..+.++|||+|||+++|+++|+++|++||+|+.|.|+.+ ++++++||||+|++.++|++||+.||++.|.+++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4567899999999999999999999999999999999987 78899999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 023559 82 KAQPKMGGE 90 (280)
Q Consensus 82 ~a~~k~~~~ 90 (280)
+++++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2d9p_A 89 LAQRKEERQ 97 (103)
T ss_dssp ECSSCCCCC
T ss_pred EecccccCC
Confidence 999887654
No 24
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.85 E-value=6e-21 Score=154.70 Aligned_cols=88 Identities=23% Similarity=0.414 Sum_probs=82.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|++|.|+.++.|+++++||||+|++.++|++||+.||++.|.++.|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
|+++....
T Consensus 119 a~~~~~~~ 126 (139)
T 1u6f_A 119 AASGHQRP 126 (139)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 99876543
No 25
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=6.1e-21 Score=149.79 Aligned_cols=88 Identities=28% Similarity=0.582 Sum_probs=83.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|.++++|++||+.||++.|.++.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
++++....
T Consensus 92 a~~~~~~~ 99 (115)
T 2dgo_A 92 ATRKPPAP 99 (115)
T ss_dssp SSCCCCCS
T ss_pred ccCCCCCC
Confidence 99876543
No 26
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=5.8e-21 Score=148.69 Aligned_cols=88 Identities=18% Similarity=0.409 Sum_probs=83.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhc------CceeCCe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMH------GREFGDR 76 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~ln------g~~l~gr 76 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.|+++++||||+|.+.++|++||+.|| ++.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3567899999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEEEecCCCCCCC
Q 023559 77 VISVNKAQPKMGGE 90 (280)
Q Consensus 77 ~I~V~~a~~k~~~~ 90 (280)
.|+|+++.++....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999999886554
No 27
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.85 E-value=5.1e-21 Score=151.42 Aligned_cols=88 Identities=26% Similarity=0.578 Sum_probs=82.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEE
Q 023559 1 MAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISV 80 (280)
Q Consensus 1 m~~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V 80 (280)
|+..+.++|||+|||+++|+++|+++|++||.|+.|.|+.++ ++++++||||+|++.++|++||+.||++.|.+++|+|
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V 80 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV 80 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 456788999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EecCCCCCC
Q 023559 81 NKAQPKMGG 89 (280)
Q Consensus 81 ~~a~~k~~~ 89 (280)
++|+++...
T Consensus 81 ~~a~~~~~~ 89 (116)
T 2fy1_A 81 EQAKKPSFQ 89 (116)
T ss_dssp EECCCSSCS
T ss_pred EECCCCCCC
Confidence 999877643
No 28
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=5.8e-21 Score=146.29 Aligned_cols=85 Identities=20% Similarity=0.549 Sum_probs=80.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++ ++++++||||+|+++++|++||+.||++.|.+++|+|++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023559 83 AQPKMG 88 (280)
Q Consensus 83 a~~k~~ 88 (280)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 998764
No 29
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=5.2e-21 Score=148.01 Aligned_cols=88 Identities=18% Similarity=0.471 Sum_probs=82.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeec-CCCCCCccEEEEEeCCHHHHHHHHHHh-cCceeCCeEEEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLE-RDSGRPRGFGFITYADRRAMDDAIREM-HGREFGDRVISV 80 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d-~~tg~~rG~aFV~F~~~e~A~~Ai~~l-ng~~l~gr~I~V 80 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.+ +.++++++||||+|++.++|++||+.| |++.|.++.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456799999999999999999999999999999999998 789999999999999999999999999 999999999999
Q ss_pred EecCCCCCCC
Q 023559 81 NKAQPKMGGE 90 (280)
Q Consensus 81 ~~a~~k~~~~ 90 (280)
++|+++....
T Consensus 92 ~~a~~~~~~~ 101 (107)
T 2cph_A 92 EWADSEVTVQ 101 (107)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9999876554
No 30
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.7e-21 Score=149.96 Aligned_cols=88 Identities=26% Similarity=0.464 Sum_probs=82.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeE--------EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeC
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKII--------ECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFG 74 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~--------~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~ 74 (280)
..+.++|||+|||+++|+++|+++|++||.|+ .|.|+.++.++++++||||+|.++++|++||+.||+++|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45789999999999999999999999999999 6999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCCCC
Q 023559 75 DRVISVNKAQPKMGGE 90 (280)
Q Consensus 75 gr~I~V~~a~~k~~~~ 90 (280)
+++|+|++++++....
T Consensus 92 g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 92 GSKLKVSLARKKPPMN 107 (113)
T ss_dssp TEECEEECSSCCCCST
T ss_pred CCEEEEEECCCCCCCC
Confidence 9999999999876543
No 31
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=5.5e-21 Score=141.72 Aligned_cols=82 Identities=33% Similarity=0.543 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|++.++|++||+.||++.|.+++|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 023559 83 AQ 84 (280)
Q Consensus 83 a~ 84 (280)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 32
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.8e-20 Score=144.23 Aligned_cols=86 Identities=24% Similarity=0.442 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.+ +++||||+|+++++|++||+.||++.|.+++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 467899999999999999999999999999999999988654 689999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
++++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqi_A 90 ATTPSSQK 97 (103)
T ss_dssp CCCTTCCC
T ss_pred CCCCcccc
Confidence 99876543
No 33
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.85 E-value=9.3e-21 Score=146.24 Aligned_cols=86 Identities=23% Similarity=0.450 Sum_probs=80.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCC---eEEEE
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGD---RVISV 80 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~g---r~I~V 80 (280)
.+.++|||+|||+++|+++|+++|++||+|+.|.|+.++ ++++++||||+|++.++|++||+.||++.|.+ ++|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 467999999999999999999999999999999999997 78999999999999999999999999999998 99999
Q ss_pred EecCCCCCCC
Q 023559 81 NKAQPKMGGE 90 (280)
Q Consensus 81 ~~a~~k~~~~ 90 (280)
++|+++..+.
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999887654
No 34
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.4e-21 Score=143.92 Aligned_cols=83 Identities=29% Similarity=0.484 Sum_probs=79.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|++.++|++||+.||++.|.+++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 023559 83 AQP 85 (280)
Q Consensus 83 a~~ 85 (280)
|++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 874
No 35
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=146.18 Aligned_cols=85 Identities=24% Similarity=0.493 Sum_probs=77.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 2 ~~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
+..+.++|||+|||+++|+++|+++|++||+|+.|.|+.+ .++++||||+|+++++|++||+.||+++|.+++|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4567899999999999999999999999999999999654 4578999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 023559 82 KAQPKMGG 89 (280)
Q Consensus 82 ~a~~k~~~ 89 (280)
+++++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99887644
No 36
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.3e-21 Score=147.86 Aligned_cols=85 Identities=21% Similarity=0.427 Sum_probs=80.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.|+++++||||+|++.++|++||+.||++.|.++.|+|++|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 023559 84 QPKMG 88 (280)
Q Consensus 84 ~~k~~ 88 (280)
+++..
T Consensus 101 ~~~~~ 105 (106)
T 1p27_B 101 FVRGP 105 (106)
T ss_dssp EESSC
T ss_pred cCCCC
Confidence 88753
No 37
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=6.1e-21 Score=147.44 Aligned_cols=87 Identities=25% Similarity=0.659 Sum_probs=82.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+. |++.|.++.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999988 99999999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
++++....
T Consensus 92 a~~~~~~~ 99 (105)
T 2dh8_A 92 CTPRGMQP 99 (105)
T ss_dssp SCCSSCCT
T ss_pred ccCCCCCC
Confidence 99886543
No 38
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=8.1e-21 Score=143.57 Aligned_cols=82 Identities=23% Similarity=0.565 Sum_probs=78.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||+++|.+++|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 023559 83 AQ 84 (280)
Q Consensus 83 a~ 84 (280)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 39
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=9.4e-21 Score=144.19 Aligned_cols=84 Identities=21% Similarity=0.535 Sum_probs=80.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecC
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 84 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~ 84 (280)
++++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.++.|+|++|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 023559 85 PKMG 88 (280)
Q Consensus 85 ~k~~ 88 (280)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8753
No 40
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-20 Score=143.74 Aligned_cols=86 Identities=27% Similarity=0.582 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.+ +++||||+|++.++|++||+.||++.|.+++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999999988653 889999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
++++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cq3_A 90 ATARVMTN 97 (103)
T ss_dssp CCSSCCCC
T ss_pred cccCCCCC
Confidence 99887654
No 41
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=6.8e-21 Score=145.51 Aligned_cols=86 Identities=20% Similarity=0.415 Sum_probs=81.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeE-EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeE---
Q 023559 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKII-ECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRV--- 77 (280)
Q Consensus 2 ~~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~-~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~--- 77 (280)
+..+.++|||+|||+++++++|+++|++||+|+ .|+|+.++.++++++||||+|+++++|++||+.||++.|.++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 456789999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred -EEEEecCCCC
Q 023559 78 -ISVNKAQPKM 87 (280)
Q Consensus 78 -I~V~~a~~k~ 87 (280)
|+|++|++..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999998764
No 42
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=9e-21 Score=146.07 Aligned_cols=87 Identities=24% Similarity=0.484 Sum_probs=81.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhh-cCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCce-eCCeEEEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDR-FGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGRE-FGDRVISV 80 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~-~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~-l~gr~I~V 80 (280)
..+.++|||+|||+++|+++|+++|++ ||.|+.|.|+.++ ++++++||||+|++.++|++||+.||++. |.+++|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456799999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred EecCCCCCCC
Q 023559 81 NKAQPKMGGE 90 (280)
Q Consensus 81 ~~a~~k~~~~ 90 (280)
+++.++....
T Consensus 85 ~~a~~~~~~~ 94 (104)
T 2dhg_A 85 SVAIPKASRV 94 (104)
T ss_dssp CBCCCCCSCC
T ss_pred EEccCCCcCC
Confidence 9998876543
No 43
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=3.5e-21 Score=147.74 Aligned_cols=83 Identities=11% Similarity=0.300 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCC--eEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCc----eeCCe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGK--IIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGR----EFGDR 76 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~--I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~----~l~gr 76 (280)
+..-.||||+|||++|||++|+++|++||. |++|+|++++.|++++|||||+|++.++|++||+.||+. .|+++
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345689999999999999999999999995 678999999999999999999999999999999999997 48999
Q ss_pred EEEEEecCC
Q 023559 77 VISVNKAQP 85 (280)
Q Consensus 77 ~I~V~~a~~ 85 (280)
+|.|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999974
No 44
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.84 E-value=1.8e-20 Score=179.93 Aligned_cols=88 Identities=25% Similarity=0.537 Sum_probs=82.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||++||+++|+++|++||+|+.|.|+.++.|+++++||||+|+++++|++||++||+++|.+++|+|++|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 023559 84 QPKMGGEV 91 (280)
Q Consensus 84 ~~k~~~~~ 91 (280)
+++.....
T Consensus 180 ~~~~~~~~ 187 (437)
T 3pgw_S 180 RGRTVKGW 187 (437)
T ss_pred CCCCCCCC
Confidence 98766543
No 45
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=8.5e-21 Score=141.42 Aligned_cols=85 Identities=19% Similarity=0.442 Sum_probs=79.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCC-CccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGR-PRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~-~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
.++++|||+|||+++|+++|+++|++||.|+.|.|+.++.++. +++||||+|++.++|++||+.||+.+|.++.|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4678999999999999999999999999999999999988765 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023559 83 AQPKMG 88 (280)
Q Consensus 83 a~~k~~ 88 (280)
+.++..
T Consensus 82 a~~~~~ 87 (88)
T 4a8x_A 82 VLAPWP 87 (88)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 987653
No 46
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.84 E-value=1.1e-20 Score=147.22 Aligned_cols=85 Identities=20% Similarity=0.362 Sum_probs=81.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||+.||++.|.+++|+|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 023559 84 QPKMG 88 (280)
Q Consensus 84 ~~k~~ 88 (280)
+++..
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 88754
No 47
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=2.2e-21 Score=149.38 Aligned_cols=84 Identities=18% Similarity=0.386 Sum_probs=80.2
Q ss_pred CCCCcEEEEcCCCC------CCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCC-
Q 023559 3 GKDENRIFVGGLSW------NVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGD- 75 (280)
Q Consensus 3 ~~~~~~lfVgnLp~------~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~g- 75 (280)
+..+++|||+|||+ ++++++|+++|++||+|++|.|+.++.|++++|||||+|++.++|++||+.||++.|.+
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 44578999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 023559 76 RVISVNKAQPK 86 (280)
Q Consensus 76 r~I~V~~a~~k 86 (280)
++|+|.+|+++
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999865
No 48
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=2.3e-21 Score=146.12 Aligned_cols=83 Identities=19% Similarity=0.408 Sum_probs=73.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcC--CeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecC
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFG--KIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 84 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G--~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~ 84 (280)
.+|||+|||+++|+++|+++|++|| .|++|.|+.++.|++++|||||+|++.++|++||+.||+++|.++.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 023559 85 PKMGG 89 (280)
Q Consensus 85 ~k~~~ 89 (280)
++...
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 87654
No 49
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=1.6e-20 Score=148.18 Aligned_cols=83 Identities=24% Similarity=0.601 Sum_probs=76.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecC
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 84 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~ 84 (280)
..++|||+|||++|||++|+++|++||+|++|+|+.++. .++|||||+|++.++|++||+.||+++|.+++|.|++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 467899999999999999999999999999999999864 478999999999999999999999999999999999998
Q ss_pred CCCCC
Q 023559 85 PKMGG 89 (280)
Q Consensus 85 ~k~~~ 89 (280)
++...
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 87653
No 50
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.83 E-value=2.4e-20 Score=144.43 Aligned_cols=81 Identities=17% Similarity=0.429 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++ ++++++||||+|+++++|++||+.||+++|.+++|+|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cC
Q 023559 83 AQ 84 (280)
Q Consensus 83 a~ 84 (280)
|+
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 51
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.9e-20 Score=141.83 Aligned_cols=83 Identities=18% Similarity=0.322 Sum_probs=77.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHH----HHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEE
Q 023559 4 KDENRIFVGGLSWNVTERQLE----NAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVIS 79 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~----~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~ 79 (280)
.+.++|||+|||+++++++|+ ++|++||+|++|.|+.++.+ ++||||+|++.++|++||+.||+++|.+++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 467899999999999999999 99999999999999998876 78999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q 023559 80 VNKAQPKMGG 89 (280)
Q Consensus 80 V~~a~~k~~~ 89 (280)
|++|+++...
T Consensus 84 V~~a~~~~~~ 93 (96)
T 2dgx_A 84 VSLATGASGP 93 (96)
T ss_dssp EEECCCSSCC
T ss_pred EEEcCCCCCC
Confidence 9999887644
No 52
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=2.9e-20 Score=138.95 Aligned_cols=82 Identities=26% Similarity=0.560 Sum_probs=78.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecC
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 84 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~ 84 (280)
+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|.+.++|++|| .||++.|.++.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999999999999999999999999999999999 999999999999999998
Q ss_pred CCC
Q 023559 85 PKM 87 (280)
Q Consensus 85 ~k~ 87 (280)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 764
No 53
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=141.26 Aligned_cols=82 Identities=27% Similarity=0.501 Sum_probs=77.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++++++|+++|++||+|+.|.|+.++. +++++||||+|+++++|++||+.||++.|.+++|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 45679999999999999999999999999999999999876 88999999999999999999999999999999999999
Q ss_pred cCC
Q 023559 83 AQP 85 (280)
Q Consensus 83 a~~ 85 (280)
|+.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 54
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=9.9e-21 Score=152.74 Aligned_cols=86 Identities=29% Similarity=0.457 Sum_probs=81.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|+|+.++.++++++||||+|++.++|++||+.||+++|.+++|+|++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023559 83 AQPKMG 88 (280)
Q Consensus 83 a~~k~~ 88 (280)
++++..
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 988753
No 55
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.5e-20 Score=141.55 Aligned_cols=86 Identities=21% Similarity=0.484 Sum_probs=79.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++++++|+++|++||+|+.|.|+.++.|+++++||||+|++.++|++||+. ++.|+++.|.|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEEe
Confidence 46788999999999999999999999999999999999999999999999999999999999974 6799999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2cqg_A 90 PNSKQSQD 97 (103)
T ss_dssp CCTTCCCC
T ss_pred cCCCCcCC
Confidence 99886543
No 56
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=145.08 Aligned_cols=86 Identities=23% Similarity=0.460 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++ ++++++||||+|++.++|++||+.||+++|.+++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4567899999999999999999999999999999999987 588999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023559 83 AQPKMGG 89 (280)
Q Consensus 83 a~~k~~~ 89 (280)
+++....
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9865443
No 57
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=2.5e-20 Score=140.29 Aligned_cols=86 Identities=23% Similarity=0.493 Sum_probs=79.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 2 ~~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
+..+.++|||+|||+++|+++|+++|++||+|+.|.|+. +++++++||||+|++.++|++||+.||++.|.+++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456789999999999999999999999999999999987 478899999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 023559 82 KAQPKMGG 89 (280)
Q Consensus 82 ~a~~k~~~ 89 (280)
+++++...
T Consensus 82 ~a~~~~~~ 89 (92)
T 2dgv_A 82 IDRNASGP 89 (92)
T ss_dssp ECSCCSSC
T ss_pred EcCCCCCC
Confidence 99887543
No 58
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=146.86 Aligned_cols=86 Identities=22% Similarity=0.305 Sum_probs=79.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH---HHHhhcCCeEEEEEeecCCCC---CCccEEEEEeCCHHHHHHHHHHhcCceeCCe
Q 023559 3 GKDENRIFVGGLSWNVTERQLE---NAFDRFGKIIECQIMLERDSG---RPRGFGFITYADRRAMDDAIREMHGREFGDR 76 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~---~~F~~~G~I~~v~i~~d~~tg---~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr 76 (280)
..+.++|||+|||+++++++|+ ++|++||+|++|.|+.++.++ +++|||||+|+++++|++||+.||+++|.++
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4567899999999999999999 999999999999999988754 4569999999999999999999999999999
Q ss_pred EEEEEecCCCCC
Q 023559 77 VISVNKAQPKMG 88 (280)
Q Consensus 77 ~I~V~~a~~k~~ 88 (280)
+|+|++|+++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999998864
No 59
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=146.40 Aligned_cols=85 Identities=32% Similarity=0.702 Sum_probs=81.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+.+|+++|+++|++||+|+.|.|+.++.++++++||||+|.+.++|++||+.||+..|.+++|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023559 83 AQPKM 87 (280)
Q Consensus 83 a~~k~ 87 (280)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98874
No 60
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.6e-20 Score=142.79 Aligned_cols=81 Identities=21% Similarity=0.396 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCC-----eE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGD-----RV 77 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~g-----r~ 77 (280)
....++|||+|||++||+++|+++|++||+|+.|.|+.+ +||||+|+++++|++||+.||+++|.+ ++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 356789999999999999999999999999999999865 799999999999999999999999999 99
Q ss_pred EEEEecCCCCCCC
Q 023559 78 ISVNKAQPKMGGE 90 (280)
Q Consensus 78 I~V~~a~~k~~~~ 90 (280)
|+|++|+++....
T Consensus 85 i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 85 IRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEESSCCSCCC
T ss_pred EEEEeCCCCCCCC
Confidence 9999999876543
No 61
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.1e-20 Score=144.01 Aligned_cols=84 Identities=15% Similarity=0.275 Sum_probs=79.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
...++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+.||++.|.+++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 023559 84 QPKM 87 (280)
Q Consensus 84 ~~k~ 87 (280)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7653
No 62
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.7e-20 Score=147.88 Aligned_cols=82 Identities=22% Similarity=0.533 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++++++|+++|++||+|+.|+|+.++.++++++||||+|++.++|++||+.||+++|.+++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 023559 83 AQ 84 (280)
Q Consensus 83 a~ 84 (280)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 63
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=2.9e-20 Score=142.23 Aligned_cols=82 Identities=30% Similarity=0.489 Sum_probs=78.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEE--------EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeC
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIE--------CQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFG 74 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~--------v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~ 74 (280)
..+.++|||+|||+++|+++|+++|++||.|+. |.|+.++.|++++|||||+|.+.++|++||+.||+..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 456899999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CeEEEEEecC
Q 023559 75 DRVISVNKAQ 84 (280)
Q Consensus 75 gr~I~V~~a~ 84 (280)
++.|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999985
No 64
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=6.6e-20 Score=136.73 Aligned_cols=80 Identities=35% Similarity=0.860 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.|+++++||||+|++.++|++||+ +++.+|+++.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 4678999999999999999999999999999999999999999999999999999999999995 578899999999998
Q ss_pred c
Q 023559 83 A 83 (280)
Q Consensus 83 a 83 (280)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 65
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.1e-20 Score=145.36 Aligned_cols=84 Identities=31% Similarity=0.659 Sum_probs=79.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecCC
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 85 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~~ 85 (280)
.++|||+|||++||+++|+++|++||+|+.|.|+.++.|+++++||||+|.+.++|++||+. ++++|.++.|+|+++++
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999999999999977 99999999999999998
Q ss_pred CCCCC
Q 023559 86 KMGGE 90 (280)
Q Consensus 86 k~~~~ 90 (280)
+....
T Consensus 106 ~~~~~ 110 (116)
T 1x4b_A 106 REESG 110 (116)
T ss_dssp CCCCC
T ss_pred CccCC
Confidence 86543
No 66
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.3e-20 Score=138.11 Aligned_cols=83 Identities=19% Similarity=0.398 Sum_probs=78.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++| .|+.|.|+.+ .+++++|||||+|+++++|++||+ ||++.|.++.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4568999999999999999999999999 9999999999 789999999999999999999998 999999999999999
Q ss_pred cCCCCC
Q 023559 83 AQPKMG 88 (280)
Q Consensus 83 a~~k~~ 88 (280)
|+++..
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 988753
No 67
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=4.2e-20 Score=154.51 Aligned_cols=87 Identities=20% Similarity=0.351 Sum_probs=80.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||++||+++|+++|++||+|+.|.|+.++.|+++++||||+|.+.++|++||+.||++.|.+++|.|.+|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 023559 84 QPKMGGE 90 (280)
Q Consensus 84 ~~k~~~~ 90 (280)
.++....
T Consensus 150 ~~~~~~~ 156 (165)
T 1rk8_A 150 FVKGPKR 156 (165)
T ss_dssp EECC---
T ss_pred cCCCCCC
Confidence 8876543
No 68
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.82 E-value=1.2e-20 Score=143.00 Aligned_cols=82 Identities=16% Similarity=0.316 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|+++++|++||+.||++.|.+++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 023559 84 QP 85 (280)
Q Consensus 84 ~~ 85 (280)
++
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 69
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=2.6e-21 Score=170.76 Aligned_cols=82 Identities=20% Similarity=0.447 Sum_probs=77.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcC--CeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFG--KIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G--~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..++|||+|||++|||++|+++|++|| +|++|+|++++.|++++|||||+|++.++|++||+.||+++|++++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 023559 83 AQPK 86 (280)
Q Consensus 83 a~~k 86 (280)
|+++
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9754
No 70
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.2e-20 Score=141.29 Aligned_cols=84 Identities=29% Similarity=0.568 Sum_probs=77.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++| ..|.|+.++.++++++||||+|+++++|++||+.||+++|.+++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4568999999999999999999999977 4688888888999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023559 83 AQPKMGG 89 (280)
Q Consensus 83 a~~k~~~ 89 (280)
|+++...
T Consensus 89 a~~~~~~ 95 (102)
T 2fc8_A 89 AKPKGEG 95 (102)
T ss_dssp CCCCCSS
T ss_pred ecCCCCC
Confidence 9987654
No 71
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-20 Score=143.27 Aligned_cols=87 Identities=21% Similarity=0.409 Sum_probs=81.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCC-eEEEEEe-ecCCCCCCccEEEEEeCCHHHHHHHHHHhc--CceeCCeEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGK-IIECQIM-LERDSGRPRGFGFITYADRRAMDDAIREMH--GREFGDRVI 78 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~-I~~v~i~-~d~~tg~~rG~aFV~F~~~e~A~~Ai~~ln--g~~l~gr~I 78 (280)
+.+.++|||+|||+++|+++|+++|++||. |+.|.|+ .++.|+++++||||+|.+.++|++||+.|| ++.|.++.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 457889999999999999999999999998 9999998 888889999999999999999999999996 589999999
Q ss_pred EEEecCCCCCC
Q 023559 79 SVNKAQPKMGG 89 (280)
Q Consensus 79 ~V~~a~~k~~~ 89 (280)
+|++|+++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999987654
No 72
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-20 Score=140.28 Aligned_cols=82 Identities=16% Similarity=0.439 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||++.|.++.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred cC
Q 023559 83 AQ 84 (280)
Q Consensus 83 a~ 84 (280)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 73
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=136.14 Aligned_cols=80 Identities=29% Similarity=0.654 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+ ++||||+|+++++|++||+.||+++|.+++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4678999999999999999999999999999999997 56999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
++++....
T Consensus 77 a~~~~~~~ 84 (90)
T 2dnq_A 77 SKNKSKAS 84 (90)
T ss_dssp SSCCCCCC
T ss_pred CCCCCCCC
Confidence 99876543
No 74
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=4.5e-20 Score=153.75 Aligned_cols=82 Identities=20% Similarity=0.465 Sum_probs=77.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcC--CeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFG--KIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G--~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
+.++|||+|||++|||++|+++|++|| .|++|+|+.++.|++++|||||+|++.++|++||+.||+++|.++.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 023559 83 AQPK 86 (280)
Q Consensus 83 a~~k 86 (280)
|+++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 75
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=8e-20 Score=142.88 Aligned_cols=85 Identities=32% Similarity=0.698 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.|++++|||||+|++.++|++||+.++ +.|.++.|.|+++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEEc
Confidence 467899999999999999999999999999999999999999999999999999999999998875 9999999999999
Q ss_pred CCCCCC
Q 023559 84 QPKMGG 89 (280)
Q Consensus 84 ~~k~~~ 89 (280)
.++...
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 987643
No 76
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7e-20 Score=143.06 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcC--ceeCCeEEEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHG--REFGDRVISV 80 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng--~~l~gr~I~V 80 (280)
..+.++|||+|||++|||++|+++|++||+|++|.|+++ ++||||+|++.++|++||+.|++ .+|.+++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 467899999999999999999999999999999999864 68999999999999999998864 7899999999
Q ss_pred EecCCCCCCC
Q 023559 81 NKAQPKMGGE 90 (280)
Q Consensus 81 ~~a~~k~~~~ 90 (280)
++|+++....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9999876554
No 77
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.81 E-value=2.7e-19 Score=137.93 Aligned_cols=80 Identities=29% Similarity=0.499 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||+++|+++|+++|++||+|+.|.|+ ++||||+|+++++|++||+.||+++|.+++|+|+++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 467899999999999999999999999999999987 349999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 023559 84 QPKMGGEV 91 (280)
Q Consensus 84 ~~k~~~~~ 91 (280)
+++.....
T Consensus 81 ~~~~~~~~ 88 (103)
T 2dgu_A 81 KPPDQKRK 88 (103)
T ss_dssp CCCCCCCC
T ss_pred CCCcccch
Confidence 98776543
No 78
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.8e-20 Score=145.11 Aligned_cols=82 Identities=23% Similarity=0.448 Sum_probs=78.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecCC
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 85 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~~ 85 (280)
.++|||+|||++|++++|+++|++||.|+.|.|+.++.|+++++||||+|++.++|++|| .||++.|.++.|+|+++++
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 479999999999999999999999999999999999999999999999999999999999 9999999999999999987
Q ss_pred CCC
Q 023559 86 KMG 88 (280)
Q Consensus 86 k~~ 88 (280)
+..
T Consensus 104 ~~~ 106 (114)
T 2cq4_A 104 EKN 106 (114)
T ss_dssp HHH
T ss_pred Ccc
Confidence 643
No 79
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=139.21 Aligned_cols=83 Identities=22% Similarity=0.466 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++|+.| +|+.+ .++++++||||+|+++++|++||+.||++.|.++.|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3568999999999999999999999999877 45555 6788999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023559 83 AQPKMGG 89 (280)
Q Consensus 83 a~~k~~~ 89 (280)
++++...
T Consensus 88 a~~~~~~ 94 (101)
T 2fc9_A 88 QGPRGSP 94 (101)
T ss_dssp CSSCCCC
T ss_pred cCCCCCC
Confidence 9987654
No 80
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-20 Score=142.71 Aligned_cols=82 Identities=16% Similarity=0.253 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++||++|+++|++|+. ++|+|+.++ +++++|||||+|+++++|++|| +||+++|.++.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 356789999999999999999999999995 499999997 8999999999999999999999 5899999999999999
Q ss_pred cCCCC
Q 023559 83 AQPKM 87 (280)
Q Consensus 83 a~~k~ 87 (280)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 88764
No 81
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-20 Score=150.88 Aligned_cols=86 Identities=14% Similarity=0.264 Sum_probs=80.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEE--EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCc----eeCCe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIE--CQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGR----EFGDR 76 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~--v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~----~l~gr 76 (280)
..+.++|||+|||++|||++|+++|++||.|+. |+|++++.|++++|||||+|++. +|++||+.||++ +|.++
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 456789999999999999999999999999977 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEecCCCCCC
Q 023559 77 VISVNKAQPKMGG 89 (280)
Q Consensus 77 ~I~V~~a~~k~~~ 89 (280)
+|+|++++++...
T Consensus 99 ~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 TINVEFAKGSKRD 111 (131)
T ss_dssp CCCCEECCCSCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999887544
No 82
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=1.2e-19 Score=149.87 Aligned_cols=87 Identities=23% Similarity=0.471 Sum_probs=81.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.|++++|||||+|++.++|++||+.||++.|.++.|.|.+|
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 023559 84 QPKMGGE 90 (280)
Q Consensus 84 ~~k~~~~ 90 (280)
+++....
T Consensus 148 ~~~~~~~ 154 (158)
T 2kn4_A 148 RYGRPPD 154 (158)
T ss_dssp CCSSCCC
T ss_pred CCCCCCC
Confidence 9875543
No 83
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.6e-20 Score=141.94 Aligned_cols=85 Identities=31% Similarity=0.745 Sum_probs=80.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||+.||++.|.++.|+|++|
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 023559 84 QPKMG 88 (280)
Q Consensus 84 ~~k~~ 88 (280)
+++..
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 88764
No 84
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=1.7e-19 Score=143.55 Aligned_cols=85 Identities=18% Similarity=0.416 Sum_probs=80.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||+++++++|+++|++||+|+.|.|+.++ ++++++||||+|++.++|++||+.||++.|.++.|+|++|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 456899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 023559 84 QPKMGG 89 (280)
Q Consensus 84 ~~k~~~ 89 (280)
.++...
T Consensus 112 ~~~~~~ 117 (124)
T 2kt5_A 112 ASQIDL 117 (124)
T ss_dssp CCTTCC
T ss_pred CCCCCC
Confidence 876544
No 85
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.3e-19 Score=134.55 Aligned_cols=81 Identities=25% Similarity=0.557 Sum_probs=74.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 2 ~~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
...+.++|||+|||+++|+++|+++|++||.|+.|.|+++ ||||+|+++++|++||+.||+++|.+++|+|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3567899999999999999999999999999999999743 99999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 023559 82 KAQPKMGGE 90 (280)
Q Consensus 82 ~a~~k~~~~ 90 (280)
+++++....
T Consensus 78 ~a~~~~~~~ 86 (92)
T 2dgt_A 78 LSTSRLRTA 86 (92)
T ss_dssp ESSCCCSCC
T ss_pred EccCCCCCC
Confidence 999876543
No 86
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=3.4e-20 Score=150.63 Aligned_cols=87 Identities=23% Similarity=0.471 Sum_probs=81.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|++.++|++||+.||+++|.+++|+|+++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 023559 84 QPKMGGE 90 (280)
Q Consensus 84 ~~k~~~~ 90 (280)
+++....
T Consensus 125 ~~~~~~~ 131 (135)
T 2lea_A 125 RYGRPPD 131 (135)
T ss_dssp CCCCCCT
T ss_pred CCCCCCc
Confidence 9876543
No 87
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=2e-19 Score=142.86 Aligned_cols=83 Identities=30% Similarity=0.617 Sum_probs=78.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecCC
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 85 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~~ 85 (280)
.++|||+|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++|| .||++.|.++.|+|+++++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 579999999999999999999999999999999999999999999999999999999999 8999999999999999987
Q ss_pred CCCC
Q 023559 86 KMGG 89 (280)
Q Consensus 86 k~~~ 89 (280)
....
T Consensus 115 ~~~~ 118 (124)
T 2jwn_A 115 NMPG 118 (124)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6543
No 88
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=141.39 Aligned_cols=83 Identities=23% Similarity=0.497 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcee--------C
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREF--------G 74 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l--------~ 74 (280)
+.+.++|||+|||+++|+++|+++|++||+|+.|.|+.++ ++++++||||+|.+.++|++||+.||++.| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3567899999999999999999999999999999999998 899999999999999999999999999999 5
Q ss_pred CeEEEEEecCCC
Q 023559 75 DRVISVNKAQPK 86 (280)
Q Consensus 75 gr~I~V~~a~~k 86 (280)
+++|.|.+|.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999875
No 89
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=3.8e-20 Score=142.24 Aligned_cols=83 Identities=24% Similarity=0.476 Sum_probs=76.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecC-CCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLER-DSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~-~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
....++|||+|||+++++++|+++|++|| |++|.|+.++ .+++++|||||+|.+.++|++|| .||+..|.++.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 35679999999999999999999999999 9999999998 68999999999999999999999 999999999999999
Q ss_pred ecCCCC
Q 023559 82 KAQPKM 87 (280)
Q Consensus 82 ~a~~k~ 87 (280)
+|+++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998764
No 90
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=140.34 Aligned_cols=80 Identities=15% Similarity=0.101 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCc--eeCCeEEE
Q 023559 3 GKDENRIFVGGLSW-NVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGR--EFGDRVIS 79 (280)
Q Consensus 3 ~~~~~~lfVgnLp~-~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~--~l~gr~I~ 79 (280)
..+.++|||+|||+ ++||++|+++|++||+|++|.|+++ ++||||+|+++++|++||+.||+. +|.+++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 45788999999999 9999999999999999999999865 469999999999999999999864 59999999
Q ss_pred EEecCCCCC
Q 023559 80 VNKAQPKMG 88 (280)
Q Consensus 80 V~~a~~k~~ 88 (280)
|++|+++..
T Consensus 86 V~~a~~~~~ 94 (102)
T 1x4d_A 86 VHLSQKYKR 94 (102)
T ss_dssp EEEECCCTT
T ss_pred EEECCCCCC
Confidence 999987654
No 91
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=136.93 Aligned_cols=80 Identities=31% Similarity=0.495 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeC--CeEEEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFG--DRVISV 80 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~--gr~I~V 80 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.+ ++||||+|++.++|++||+.||+++|. +++|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 356799999999999999999999999999999999754 679999999999999999999999999 999999
Q ss_pred EecCCCCC
Q 023559 81 NKAQPKMG 88 (280)
Q Consensus 81 ~~a~~k~~ 88 (280)
++++++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99998754
No 92
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=145.17 Aligned_cols=81 Identities=33% Similarity=0.543 Sum_probs=77.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.||++.|.+++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 023559 83 A 83 (280)
Q Consensus 83 a 83 (280)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 93
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.9e-20 Score=141.98 Aligned_cols=81 Identities=9% Similarity=0.227 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
+.+.++|||+|||+++|+++|+++|++||+|+.|.|+.++. +.++|||||+|+++++|++||+ |++++|+++.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999987 8999999999999999999997 899999999999998
Q ss_pred cCC
Q 023559 83 AQP 85 (280)
Q Consensus 83 a~~ 85 (280)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 753
No 94
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=133.67 Aligned_cols=79 Identities=25% Similarity=0.520 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||.|+.|.|+++ ||||+|++.++|++||+.||++.|.+++|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999999743 999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023559 83 AQPKMGG 89 (280)
Q Consensus 83 a~~k~~~ 89 (280)
++++...
T Consensus 78 a~~~~~~ 84 (90)
T 2dnp_A 78 STKGQKK 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9987554
No 95
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.7e-20 Score=145.13 Aligned_cols=87 Identities=24% Similarity=0.369 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||+++|+++|+++|++||.|+.|.|..+..++++++||||+|++.++|++||+.||++.|.++.|+|++|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45689999999999999999999999999854333322237789999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 023559 84 QPKMGGE 90 (280)
Q Consensus 84 ~~k~~~~ 90 (280)
+++....
T Consensus 103 ~~~~~~~ 109 (115)
T 2cpx_A 103 KNKKQRS 109 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCCC
Confidence 9887654
No 96
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.6e-20 Score=144.68 Aligned_cols=83 Identities=8% Similarity=0.191 Sum_probs=77.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCe-EEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKI-IECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I-~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
..+.++|||+|||++||+++|+++|++||.| +.|.|+.++ +++++|||||+|+++++|++||+. |++.|.++.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3567899999999999999999999999999 889999998 899999999999999999999976 9999999999999
Q ss_pred ecCCCC
Q 023559 82 KAQPKM 87 (280)
Q Consensus 82 ~a~~k~ 87 (280)
+|.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998665
No 97
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5e-19 Score=137.16 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhc--CceeCCeEEEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMH--GREFGDRVISV 80 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~ln--g~~l~gr~I~V 80 (280)
..+.++|||+|||+++||++|+++|++||.|++|.|+.+ ++||||+|++.++|++||+.|+ +.+|.+++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 457889999999999999999999999999999988754 7899999999999999999875 57899999999
Q ss_pred EecCCCCCCC
Q 023559 81 NKAQPKMGGE 90 (280)
Q Consensus 81 ~~a~~k~~~~ 90 (280)
++|+++....
T Consensus 86 ~~a~~~~~~~ 95 (101)
T 2cq1_A 86 QYSNHKELKT 95 (101)
T ss_dssp EECSCSSCCC
T ss_pred EEcCcccCcC
Confidence 9999876554
No 98
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=140.48 Aligned_cols=83 Identities=28% Similarity=0.616 Sum_probs=77.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.++. .+++||||+|++.++|++||+.||++.|.+++|+|++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999998854 4899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023559 83 AQPKM 87 (280)
Q Consensus 83 a~~k~ 87 (280)
|+++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98763
No 99
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=6.2e-20 Score=133.13 Aligned_cols=75 Identities=33% Similarity=0.724 Sum_probs=72.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
+|||+|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+ ||++.|.+++|.|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999999999999999999999999996 9999999999999876
No 100
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=4.4e-19 Score=137.32 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCce--eCCeEEEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGRE--FGDRVISV 80 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~--l~gr~I~V 80 (280)
..++++|||+|||+++||++|+++|++||+|++|.|++ .|+||||+|++.++|++||+.|++.. |.+++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 35789999999999999999999999999999999974 36899999999999999999999875 78999999
Q ss_pred EecCCCC
Q 023559 81 NKAQPKM 87 (280)
Q Consensus 81 ~~a~~k~ 87 (280)
++|+++.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998764
No 101
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.9e-19 Score=137.37 Aligned_cols=82 Identities=18% Similarity=0.471 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++||.|+.|.|+.+ ++||||+|++.++|++||+.||+++|.+++|+|++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 356789999999999999999999999999999999865 67999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
++++....
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4g_A 96 GKESPDMT 103 (109)
T ss_dssp CCCCCSSC
T ss_pred cCCCCCCC
Confidence 99876543
No 102
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=6.3e-20 Score=133.47 Aligned_cols=76 Identities=34% Similarity=0.757 Sum_probs=73.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
++|||+|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+.|+ +.|++++|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999999999999999999999999999999 9999999999987
No 103
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.6e-19 Score=138.63 Aligned_cols=83 Identities=17% Similarity=0.384 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEE-EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIE-CQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~-v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
..+.++|||+|||+++||++|+++|++||.|+. |.|+.+ .+++++|||||+|+++++|++||+. |++.|.++.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 356799999999999999999999999999998 888888 7899999999999999999999976 9999999999999
Q ss_pred ecCCCC
Q 023559 82 KAQPKM 87 (280)
Q Consensus 82 ~a~~k~ 87 (280)
+++++.
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 997654
No 104
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=3.5e-20 Score=139.11 Aligned_cols=82 Identities=30% Similarity=0.708 Sum_probs=74.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecCCC
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 86 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~~k 86 (280)
++|||+|||+++++++|+++|++||+|+.|.|+.++.++++++||||+|++.+ |++||+.||+..|.+++|+|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999999876
Q ss_pred CCC
Q 023559 87 MGG 89 (280)
Q Consensus 87 ~~~ 89 (280)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 105
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-19 Score=142.33 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcC--ceeCCeEEEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHG--REFGDRVISV 80 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng--~~l~gr~I~V 80 (280)
..+.++|||+|||++|||++|+++|++||+|++|.|+.+ ++||||+|++.++|++||+.|++ .+|.+++|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 457889999999999999999999999999999999875 68999999999999999999874 6899999999
Q ss_pred EecCCCCCCC
Q 023559 81 NKAQPKMGGE 90 (280)
Q Consensus 81 ~~a~~k~~~~ 90 (280)
++|+++..+.
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9999877654
No 106
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=6e-21 Score=150.35 Aligned_cols=87 Identities=29% Similarity=0.452 Sum_probs=82.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEE--------EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeC
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIE--------CQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFG 74 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~--------v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~ 74 (280)
..+.++|||+|||+++++++|+++|++||.|+. |.|+.++.++++++||||+|++.++|++||+.||++.|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 467899999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCCC
Q 023559 75 DRVISVNKAQPKMGG 89 (280)
Q Consensus 75 gr~I~V~~a~~k~~~ 89 (280)
+++|+|++|+++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999987654
No 107
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-20 Score=142.40 Aligned_cols=84 Identities=18% Similarity=0.352 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||+++|+++|+++|++||.|+. .|+.++.++++++||||+|++.++|++||+ ||++.|.++.|+|++|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 46789999999999999999999999999888 677777788999999999999999999998 9999999999999999
Q ss_pred CCCCCC
Q 023559 84 QPKMGG 89 (280)
Q Consensus 84 ~~k~~~ 89 (280)
+++...
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 987543
No 108
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.79 E-value=3.6e-19 Score=138.01 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCC------cHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCe-
Q 023559 4 KDENRIFVGGLSWNV------TERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDR- 76 (280)
Q Consensus 4 ~~~~~lfVgnLp~~v------te~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr- 76 (280)
...++|||+|||+.+ |+++|+++|++||.|+.|.|+ +.+++++|||||+|.+.++|++||+.||++.|.++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 889999999999999999988 46789999999999999999999999999999998
Q ss_pred EEEEEecCCC
Q 023559 77 VISVNKAQPK 86 (280)
Q Consensus 77 ~I~V~~a~~k 86 (280)
+|+|++|...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999754
No 109
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=1.1e-19 Score=144.13 Aligned_cols=82 Identities=18% Similarity=0.364 Sum_probs=76.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCC---eEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEE
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGK---IIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISV 80 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~---I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V 80 (280)
.+.++|||+|||++|||++|+++|++||. |+.|+|+.++. ++++|||||+|+++++|++||+ ||++.|.++.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45789999999999999999999999999 89999999987 8999999999999999999997 9999999999999
Q ss_pred EecCCCC
Q 023559 81 NKAQPKM 87 (280)
Q Consensus 81 ~~a~~k~ 87 (280)
.+++++.
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9987543
No 110
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.5e-20 Score=147.83 Aligned_cols=84 Identities=17% Similarity=0.366 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||++||+++|+++|++||.|+.|.++.+..+++++|||||+|+++++|++||+ ||++.|.++.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999999987777777899999999999999999999998 999999999999999
Q ss_pred cCCCC
Q 023559 83 AQPKM 87 (280)
Q Consensus 83 a~~k~ 87 (280)
|+++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97643
No 111
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.78 E-value=2.5e-19 Score=141.31 Aligned_cols=79 Identities=22% Similarity=0.423 Sum_probs=67.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeE-----E
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRV-----I 78 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~-----I 78 (280)
...++|||+|||++|||++|+++|++||+|+.|.|+.+ +||||+|+++++|++||++||+++|++++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45689999999999999999999999999999999765 79999999999999999999999999988 7
Q ss_pred EEEecCCCCCC
Q 023559 79 SVNKAQPKMGG 89 (280)
Q Consensus 79 ~V~~a~~k~~~ 89 (280)
+|+.+.++...
T Consensus 87 ~v~~~~~~~~~ 97 (115)
T 3beg_B 87 RVKVDGPRSPS 97 (115)
T ss_dssp EEEECC----C
T ss_pred EeccCCCCCCC
Confidence 88887775543
No 112
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9e-19 Score=136.37 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCc--eeCCeEEEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGR--EFGDRVISV 80 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~--~l~gr~I~V 80 (280)
..+.++|||+|||++++|++|+++|++||+|+.|.|+.+ ++||||+|+++++|++||+.|++. .|.+++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 356789999999999999999999999999999998753 689999999999999999988764 589999999
Q ss_pred EecCCCCCCC
Q 023559 81 NKAQPKMGGE 90 (280)
Q Consensus 81 ~~a~~k~~~~ 90 (280)
++++++....
T Consensus 86 ~~a~~~~~~~ 95 (104)
T 1wex_A 86 NYSTSKRITR 95 (104)
T ss_dssp EECSSSSCCC
T ss_pred EEccCccccC
Confidence 9998876543
No 113
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=4e-19 Score=135.51 Aligned_cols=80 Identities=21% Similarity=0.412 Sum_probs=73.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
...++|||+|||+++|+++|+++|++||.|+ +.|+.+ ++++||||+|.+.++|++||+.||++.|.+++|+|+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4578999999999999999999999999997 677654 57899999999999999999999999999999999999
Q ss_pred CCCCC
Q 023559 84 QPKMG 88 (280)
Q Consensus 84 ~~k~~ 88 (280)
+++..
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88753
No 114
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.78 E-value=4e-20 Score=151.43 Aligned_cols=82 Identities=18% Similarity=0.275 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||++|||++|+++|++|+ |++|.|+++++ ++++|||||+|+++++|++|| +||+++|.++.|+|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4678999999999999999999999999 77999999976 999999999999999999999 89999999999999999
Q ss_pred CCCCC
Q 023559 84 QPKMG 88 (280)
Q Consensus 84 ~~k~~ 88 (280)
+++..
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 87654
No 115
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=4.7e-19 Score=135.84 Aligned_cols=78 Identities=26% Similarity=0.490 Sum_probs=73.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecCCC
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 86 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~~k 86 (280)
++|||+|||+++|+++|+++|++||+|+.|.|+.+ +++||||+|++.++|++||+.||+.+|.++.|+|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 6889999999999999999999999999999999999987
Q ss_pred CCC
Q 023559 87 MGG 89 (280)
Q Consensus 87 ~~~ 89 (280)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 116
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.2e-19 Score=134.10 Aligned_cols=81 Identities=22% Similarity=0.382 Sum_probs=72.5
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhhcCC-eEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcC-ceeCCeEEE
Q 023559 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGK-IIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHG-REFGDRVIS 79 (280)
Q Consensus 2 ~~~~~~~lfVgnLp~~vte~dL~~~F~~~G~-I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng-~~l~gr~I~ 79 (280)
...+.++|||+|||+++|+++|+++|++||. |+.+.|+ +++||||+|+++++|++||+.||+ ++|.+++|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3467899999999999999999999999999 6666553 368999999999999999999999 999999999
Q ss_pred EEecCCCCCC
Q 023559 80 VNKAQPKMGG 89 (280)
Q Consensus 80 V~~a~~k~~~ 89 (280)
|++++++...
T Consensus 77 v~~a~~~~~~ 86 (93)
T 2cqh_A 77 VDYSVSKKLR 86 (93)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCcccc
Confidence 9999987654
No 117
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.9e-19 Score=134.21 Aligned_cols=80 Identities=28% Similarity=0.448 Sum_probs=74.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||+++|+++|+++|++||+|+.|.|+.+ ++||||+|++.++|++||+.||+++|.+++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 46789999999999999999999999999999999854 689999999999999999999999999999999999
Q ss_pred CCCCCC
Q 023559 84 QPKMGG 89 (280)
Q Consensus 84 ~~k~~~ 89 (280)
+++...
T Consensus 87 ~~~~~~ 92 (99)
T 2cpj_A 87 CHSASL 92 (99)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 987654
No 118
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=8.6e-19 Score=132.26 Aligned_cols=75 Identities=12% Similarity=0.236 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
-.+..|||+||++.|||++|+++|.+||+|++|.|+. ++|||||+|.++++|++||+.||+.+|.+++|+|++|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3567899999999999999999999999999999975 5899999999999999999999999999999999998
Q ss_pred C
Q 023559 84 Q 84 (280)
Q Consensus 84 ~ 84 (280)
+
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 119
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-18 Score=131.77 Aligned_cols=78 Identities=19% Similarity=0.451 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhc--CCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRF--GKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~--G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
.+.++|||+|||+++|+++|+++|++| +.|+.|.++ ++||||+|.+.++|++||+.||++.|.+++|+|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 467899999999999999999999999 999998875 5699999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 023559 82 KAQPKMGG 89 (280)
Q Consensus 82 ~a~~k~~~ 89 (280)
+|+++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpd_A 85 LAKPVDKD 92 (99)
T ss_dssp CCCCCCCC
T ss_pred ECCCCCCC
Confidence 99987653
No 120
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=3e-19 Score=135.68 Aligned_cols=85 Identities=22% Similarity=0.461 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHH----HHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCe
Q 023559 1 MAGKDENRIFVGGLSWNVTERQLE----NAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDR 76 (280)
Q Consensus 1 m~~~~~~~lfVgnLp~~vte~dL~----~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr 76 (280)
|+..+.++|||+|||+++++++|+ ++|++||.|+.|.|+. ++++++||||+|.+.++|++||+.||+..|.++
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 345788999999999999999999 9999999999999873 466789999999999999999999999999999
Q ss_pred EEEEEecCCCCC
Q 023559 77 VISVNKAQPKMG 88 (280)
Q Consensus 77 ~I~V~~a~~k~~ 88 (280)
.|+|++++++..
T Consensus 80 ~l~v~~a~~~~~ 91 (97)
T 1nu4_A 80 PMRIQYAKTDSD 91 (97)
T ss_dssp ECEEEECSSCCT
T ss_pred EEEEEEccCCCc
Confidence 999999988753
No 121
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=1.8e-19 Score=147.04 Aligned_cols=81 Identities=19% Similarity=0.363 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCC---eEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEE
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGK---IIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISV 80 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~---I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V 80 (280)
.+.++|||+|||++|||++|+++|++||. |+.|.|+.++. ++++|||||+|+++++|++||+ ||+++|.++.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 45789999999999999999999999999 89999999987 9999999999999999999998 9999999999999
Q ss_pred EecCCC
Q 023559 81 NKAQPK 86 (280)
Q Consensus 81 ~~a~~k 86 (280)
.+++++
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 998754
No 122
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.78 E-value=5.3e-19 Score=139.34 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcC-CeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFG-KIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
...++|||+|||+++||++|+++|++|| +|+.|.|+.. +++|||||+|++.++|++||+.||+++|.+++|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567999999999999999999999999 8999988643 4789999999999999999999999999999999999
Q ss_pred cCCCC
Q 023559 83 AQPKM 87 (280)
Q Consensus 83 a~~k~ 87 (280)
++.++
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 97654
No 123
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.6e-19 Score=140.59 Aligned_cols=78 Identities=15% Similarity=0.336 Sum_probs=73.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecCC
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 85 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~~ 85 (280)
.++|||+|||+++||++|+++|++| .|+.|.|+.++. ++++|||||+|+++++|++|| .||++.|.++.|+|..+++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4699999999999999999999999 999999999876 899999999999999999999 7999999999999998875
Q ss_pred C
Q 023559 86 K 86 (280)
Q Consensus 86 k 86 (280)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 124
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.8e-19 Score=135.30 Aligned_cols=77 Identities=19% Similarity=0.336 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
...++|||+|||+++++++|+++|++||.|++|.|+ ++++||||+|++.++|++||+.||++.|+++.|+|++|
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 346899999999999999999999999999999997 35789999999999999999999999999999999999
Q ss_pred CCC
Q 023559 84 QPK 86 (280)
Q Consensus 84 ~~k 86 (280)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 125
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.77 E-value=1.3e-18 Score=135.58 Aligned_cols=76 Identities=24% Similarity=0.591 Sum_probs=70.7
Q ss_pred CCcEEEEcCCCCC-CcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 5 DENRIFVGGLSWN-VTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 5 ~~~~lfVgnLp~~-vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
..++|||+|||++ +|+++|+++|++||+|+.|.| +++||||+|++.++|++||+.||+++|+++.|+|+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999998 3679999999999999999999999999999999999
Q ss_pred CCCCC
Q 023559 84 QPKMG 88 (280)
Q Consensus 84 ~~k~~ 88 (280)
+++..
T Consensus 98 ~~~~~ 102 (110)
T 1wf1_A 98 GEPKP 102 (110)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 86543
No 126
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=131.39 Aligned_cols=82 Identities=21% Similarity=0.377 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
....++|||+|||+++|+++|+++|++||.|++| +.++.+++ ||||+|.++++|++||+ ||+++|.++.|.|++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3467899999999999999999999999999987 56666655 99999999999999998 999999999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
+.++....
T Consensus 79 a~~~~~~~ 86 (94)
T 2e5g_A 79 REQKEFQS 86 (94)
T ss_dssp SCCSCCCC
T ss_pred CCcCCCCC
Confidence 98766543
No 127
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=9.4e-19 Score=137.22 Aligned_cols=84 Identities=15% Similarity=0.364 Sum_probs=77.2
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEE
Q 023559 1 MAGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISV 80 (280)
Q Consensus 1 m~~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V 80 (280)
++..+.++|||+|||+++|+++|+++|++||.|+.|.|+.+. .+++||||+|.+.++|++||+.||+..|.++.|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 79 (115)
T 3lqv_A 3 LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVV 79 (115)
T ss_dssp CCTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 356778999999999999999999999999999999998654 45899999999999999999999999999999999
Q ss_pred EecCCCC
Q 023559 81 NKAQPKM 87 (280)
Q Consensus 81 ~~a~~k~ 87 (280)
++++++.
T Consensus 80 ~~a~~~~ 86 (115)
T 3lqv_A 80 LYYNANR 86 (115)
T ss_dssp EECCHHH
T ss_pred EEecCCh
Confidence 9998654
No 128
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.77 E-value=5.9e-19 Score=149.79 Aligned_cols=83 Identities=18% Similarity=0.443 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||++|++++|+++|++||+|+.|.|+.++ ++++++||||+|++.++|++||+.||++.|.+++|+|++|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred CCCC
Q 023559 84 QPKM 87 (280)
Q Consensus 84 ~~k~ 87 (280)
.+..
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 8654
No 129
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=1.4e-18 Score=135.65 Aligned_cols=79 Identities=27% Similarity=0.556 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
+.+.++|||+|||+++|+++|+++|++||.|+.|.|+ ++||||+|++.++|++||+.||+..|.++.|.|++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4568999999999999999999999999999999997 67999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023559 83 AQPKMGG 89 (280)
Q Consensus 83 a~~k~~~ 89 (280)
++++..+
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 9887543
No 130
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=5.8e-19 Score=133.95 Aligned_cols=81 Identities=22% Similarity=0.430 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++|+.|+.| ..++++++||||+|++.++|++||+.||++.|.+++|+|++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3457899999999999999999999999887665 34678899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023559 83 AQPKMG 88 (280)
Q Consensus 83 a~~k~~ 88 (280)
++++..
T Consensus 88 a~~~~~ 93 (96)
T 1fjc_A 88 TGEKGG 93 (96)
T ss_dssp CSSSCC
T ss_pred cCCCCC
Confidence 988754
No 131
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=1.9e-18 Score=149.69 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=78.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||++|||++|+++|++||+|++|+|++++.|+++++||||+|.++++|++||+.||++.+.++.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023559 83 AQPKM 87 (280)
Q Consensus 83 a~~k~ 87 (280)
+.+..
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87554
No 132
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=140.03 Aligned_cols=83 Identities=13% Similarity=0.285 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLE----NAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVI 78 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~----~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I 78 (280)
..+.++|||+|||+.+++++|+ ++|++||+|++|.|+. +++++|||||+|++.++|++||+.||+..|.+++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3567899999999999999876 6999999999988753 57789999999999999999999999999999999
Q ss_pred EEEecCCCCC
Q 023559 79 SVNKAQPKMG 88 (280)
Q Consensus 79 ~V~~a~~k~~ 88 (280)
+|++|+++..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987653
No 133
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=128.29 Aligned_cols=76 Identities=28% Similarity=0.439 Sum_probs=70.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-cCceeCCeEEEEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM-HGREFGDRVISVN 81 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~l-ng~~l~gr~I~V~ 81 (280)
..+.++|||+|||+++|+++|+++|++||+|+.|.|+.+ ++||||+|++.++|++||+.| +++.|.+++|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 456789999999999999999999999999999999864 689999999999999999989 9999999999999
Q ss_pred ecC
Q 023559 82 KAQ 84 (280)
Q Consensus 82 ~a~ 84 (280)
+|+
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 134
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.76 E-value=3.6e-18 Score=130.67 Aligned_cols=77 Identities=23% Similarity=0.467 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 3 GKDENRIFVGGLSW-NVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 3 ~~~~~~lfVgnLp~-~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
..+.++|||+|||+ ++++++|+++|++||.|+.|.|. ++||||+|++.++|++||+.||+..|.++.|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45789999999998 99999999999999999999983 6799999999999999999999999999999999
Q ss_pred ecCCCC
Q 023559 82 KAQPKM 87 (280)
Q Consensus 82 ~a~~k~ 87 (280)
+++++.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 998763
No 135
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=8.2e-19 Score=133.62 Aligned_cols=79 Identities=23% Similarity=0.414 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 3 GKDENRIFVGGLSW-NVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 3 ~~~~~~lfVgnLp~-~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
..+.++|||+|||+ ++|+++|+++|++||.|+.|.|. ++||||+|++.++|++||+.||++.|.+++|.|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35789999999999 99999999999999999999984 6799999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 023559 82 KAQPKMGG 89 (280)
Q Consensus 82 ~a~~k~~~ 89 (280)
+++++...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99877544
No 136
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.76 E-value=4.5e-19 Score=130.83 Aligned_cols=74 Identities=23% Similarity=0.438 Sum_probs=68.7
Q ss_pred CcEEEEcCCCCCC------cHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCe-EE
Q 023559 6 ENRIFVGGLSWNV------TERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDR-VI 78 (280)
Q Consensus 6 ~~~lfVgnLp~~v------te~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr-~I 78 (280)
+++|||+|||+.+ |+++|+++|++||+|++|.|+ +.+++++|||||+|++.++|++||+.||+..|.++ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 789999999999999999987 46789999999999999999999999999999999 88
Q ss_pred EEE
Q 023559 79 SVN 81 (280)
Q Consensus 79 ~V~ 81 (280)
+|.
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 137
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=3.2e-19 Score=129.22 Aligned_cols=75 Identities=25% Similarity=0.525 Sum_probs=71.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
+|||+|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|+++++|++||+ +++..|.++.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999996 5889999999999876
No 138
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.1e-18 Score=128.17 Aligned_cols=79 Identities=29% Similarity=0.496 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|| ++|+++|+++|++||+|+.|.|. ++++||||+|++.++|++||+.||+++|.+++|+|+++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46789999996 89999999999999999999985 45789999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 023559 84 QPKMGGE 90 (280)
Q Consensus 84 ~~k~~~~ 90 (280)
+++....
T Consensus 85 ~~~~~~~ 91 (97)
T 1x5p_A 85 RKQPMLD 91 (97)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876544
No 139
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-19 Score=140.06 Aligned_cols=83 Identities=24% Similarity=0.346 Sum_probs=77.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCC---eEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGK---IIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVIS 79 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~---I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~ 79 (280)
..+.++|||+|||++||+++|+++|++||. |+.|.|+.++. ++++|||||+|++.++|++||+ ||++.|.++.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 456789999999999999999999999988 89999999987 9999999999999999999998 999999999999
Q ss_pred EEecCCCC
Q 023559 80 VNKAQPKM 87 (280)
Q Consensus 80 V~~a~~k~ 87 (280)
|.+++++.
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99997643
No 140
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=7.7e-19 Score=134.84 Aligned_cols=83 Identities=23% Similarity=0.522 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.++++|||+|||+++|+++|+++|++||.|+.|.|+.++ ++++++||||+|++.++|++||+ +++.|+++.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 356899999999999999999999999999999999998 89999999999999999999997 899999999999999
Q ss_pred CCCCCC
Q 023559 84 QPKMGG 89 (280)
Q Consensus 84 ~~k~~~ 89 (280)
.++...
T Consensus 84 ~~~~~~ 89 (102)
T 2xs2_A 84 IRKQNL 89 (102)
T ss_dssp EECC--
T ss_pred CcCcch
Confidence 876543
No 141
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=130.90 Aligned_cols=80 Identities=13% Similarity=0.304 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEE-EEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIEC-QIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v-~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
...++|||+|||+++|+++|+++|++||.|+.| .|+.++.++ .|||+|.+.++|++||+.||++.|.+++|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 347899999999999999999999999999999 588876654 399999999999999999999999999999999
Q ss_pred cCCCC
Q 023559 83 AQPKM 87 (280)
Q Consensus 83 a~~k~ 87 (280)
|+++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 99874
No 142
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-18 Score=137.68 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcC--ceeCCeEEE
Q 023559 3 GKDENRIFVGGLSWN-VTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHG--REFGDRVIS 79 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~-vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng--~~l~gr~I~ 79 (280)
..+.++|||+|||++ +||++|+++|++||+|++|.|++ +++||||+|++.++|++||+.||+ .+|.+++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 99999999999999999999974 478999999999999999998864 569999999
Q ss_pred EEecCCCCCCC
Q 023559 80 VNKAQPKMGGE 90 (280)
Q Consensus 80 V~~a~~k~~~~ 90 (280)
|++|+++....
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99998776543
No 143
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.4e-19 Score=142.91 Aligned_cols=82 Identities=21% Similarity=0.354 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCe----EEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKI----IECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVI 78 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I----~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I 78 (280)
..+.++|||+|||+++||++|+++|++|++| +.|.|+.+ .+++++|||||+|+++++|++||+. |++.|.++.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 4567899999999999999999999999875 68999988 4899999999999999999999975 9999999999
Q ss_pred EEEecCCC
Q 023559 79 SVNKAQPK 86 (280)
Q Consensus 79 ~V~~a~~k 86 (280)
+|..++++
T Consensus 98 ~V~~a~~~ 105 (123)
T 2dha_A 98 ELFRSTAA 105 (123)
T ss_dssp CCEEECHH
T ss_pred EEEECCHH
Confidence 99988643
No 144
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=7.1e-18 Score=138.31 Aligned_cols=84 Identities=25% Similarity=0.572 Sum_probs=79.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecC
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 84 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~ 84 (280)
++++|||+|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|.++++|++||+.||+..|.+++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 023559 85 PKMG 88 (280)
Q Consensus 85 ~k~~ 88 (280)
++..
T Consensus 81 ~~~~ 84 (167)
T 1fxl_A 81 PSSA 84 (167)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 7653
No 145
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=8.1e-18 Score=137.84 Aligned_cols=83 Identities=29% Similarity=0.623 Sum_probs=79.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||+.||+..|.+++|+|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 023559 83 AQP 85 (280)
Q Consensus 83 a~~ 85 (280)
|++
T Consensus 164 a~~ 166 (166)
T 3md3_A 164 AAK 166 (166)
T ss_dssp SCC
T ss_pred cCC
Confidence 964
No 146
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.75 E-value=3.4e-18 Score=128.15 Aligned_cols=77 Identities=16% Similarity=0.304 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
...++|||+|||+++++++|+++|++| +|++|.|. ++++||||+|+++++|++||+.||+++|.+++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999999999 99999885 46899999999999999999999999999999999999
Q ss_pred CCCC
Q 023559 84 QPKM 87 (280)
Q Consensus 84 ~~k~ 87 (280)
..+.
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7654
No 147
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.75 E-value=5.3e-18 Score=139.60 Aligned_cols=84 Identities=24% Similarity=0.465 Sum_probs=80.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecC
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 84 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~ 84 (280)
+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.++++|++||+.|++..|.+++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 023559 85 PKMG 88 (280)
Q Consensus 85 ~k~~ 88 (280)
++..
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7654
No 148
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.74 E-value=3.9e-18 Score=140.02 Aligned_cols=79 Identities=28% Similarity=0.527 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||+++|+++|+++|++||.|+.|.|+.+ +++||||+|.+.++|++||+.||++.|.+++|+|+++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 45789999999999999999999999999999999876 5789999999999999999999999999999999999
Q ss_pred CCCC
Q 023559 84 QPKM 87 (280)
Q Consensus 84 ~~k~ 87 (280)
+++.
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8874
No 149
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=9.6e-19 Score=142.53 Aligned_cols=87 Identities=25% Similarity=0.377 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEE--E---eecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQ--I---MLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRV 77 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~--i---~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~ 77 (280)
..+.++|||+|||++||+++|+++|++||.|+.|. + +....++++++||||+|.+.++|++||+.||++.|.++.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 35678999999999999999999999999987741 1 111246789999999999999999999999999999999
Q ss_pred EEEEecCCCCCC
Q 023559 78 ISVNKAQPKMGG 89 (280)
Q Consensus 78 I~V~~a~~k~~~ 89 (280)
|.|++|+++..+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999876544
No 150
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.4e-18 Score=134.95 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecC
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 84 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~ 84 (280)
..++|||+|||+++|+++|+++|++||.|+.|.|+. +++||||+|.+.++|++||+.||++.|.++.|.|++|.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999998874 46799999999999999999999999999999999997
Q ss_pred CCC
Q 023559 85 PKM 87 (280)
Q Consensus 85 ~k~ 87 (280)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 543
No 151
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=1.1e-17 Score=143.47 Aligned_cols=87 Identities=25% Similarity=0.515 Sum_probs=82.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||.|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|++.++|++||+.||++.|.++.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 023559 84 QPKMGGE 90 (280)
Q Consensus 84 ~~k~~~~ 90 (280)
.++....
T Consensus 203 ~~~~~~~ 209 (216)
T 2qfj_A 203 VTPPMPL 209 (216)
T ss_dssp SSCSSTT
T ss_pred cCCCCCC
Confidence 9876543
No 152
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.74 E-value=1.6e-18 Score=139.64 Aligned_cols=80 Identities=20% Similarity=0.450 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeE--EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKII--ECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~--~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
.+.++|||+|||++|||++|+++|++| .|+ .|.|+.++. ++++|||||+|+++++|++||+. ++++|.++.|+|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 457899999999999999999999999 787 899999987 99999999999999999999974 7799999999999
Q ss_pred ecCCC
Q 023559 82 KAQPK 86 (280)
Q Consensus 82 ~a~~k 86 (280)
++.++
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88654
No 153
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.73 E-value=1.6e-17 Score=140.42 Aligned_cols=85 Identities=24% Similarity=0.543 Sum_probs=81.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||.|||+++++++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.++.|+|++|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 023559 84 QPKMG 88 (280)
Q Consensus 84 ~~k~~ 88 (280)
+++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98754
No 154
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=1.1e-17 Score=141.32 Aligned_cols=85 Identities=32% Similarity=0.562 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecC
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 84 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~ 84 (280)
+.++|||.|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|++.++|++||+. ++..|.++.|.|.+|.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 458999999999999999999999999999999999999999999999999999999999976 7899999999999999
Q ss_pred CCCCCC
Q 023559 85 PKMGGE 90 (280)
Q Consensus 85 ~k~~~~ 90 (280)
++....
T Consensus 182 ~k~~~~ 187 (196)
T 1l3k_A 182 SKQEMA 187 (196)
T ss_dssp ------
T ss_pred ChhHhc
Confidence 987654
No 155
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.5e-18 Score=127.21 Aligned_cols=81 Identities=23% Similarity=0.437 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
+.++++|||+|||+++|+++|+++|++||+|+.|.|+.+ +++||||+|+++++|++|+.. ...+.+++|.|.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISN 74 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEe
Confidence 467899999999999999999999999999999999864 689999999999999865432 3566999999999
Q ss_pred cCCCCCCC
Q 023559 83 AQPKMGGE 90 (280)
Q Consensus 83 a~~k~~~~ 90 (280)
++++....
T Consensus 75 a~~~~~~~ 82 (88)
T 1wf0_A 75 AEPKHNSN 82 (88)
T ss_dssp CCCCCCCC
T ss_pred cCCCCCCC
Confidence 99876543
No 156
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.73 E-value=6.8e-18 Score=127.32 Aligned_cols=78 Identities=23% Similarity=0.485 Sum_probs=63.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCc--eeCCeEEE
Q 023559 2 AGKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGR--EFGDRVIS 79 (280)
Q Consensus 2 ~~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~--~l~gr~I~ 79 (280)
+..+.++|||+|||+++||++|+++|++||+|++|.|+.+ ++|||||+|+++++|++ |++. .+.++.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 4567899999999999999999999999999999999874 68999999999999984 3444 45799999
Q ss_pred EEecCCCCC
Q 023559 80 VNKAQPKMG 88 (280)
Q Consensus 80 V~~a~~k~~ 88 (280)
|.+|.++..
T Consensus 78 v~~a~~k~~ 86 (89)
T 3d2w_A 78 ISNAEPKHN 86 (89)
T ss_dssp EEECC----
T ss_pred EEEcCCCCc
Confidence 999998764
No 157
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=132.62 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=72.3
Q ss_pred CCCCCcEEEE--cCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcee-----C
Q 023559 2 AGKDENRIFV--GGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREF-----G 74 (280)
Q Consensus 2 ~~~~~~~lfV--gnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l-----~ 74 (280)
...++++||| +||+++|||++|+++|++||+|+.|.|+. .++||||+|++.++|++||+.||+++| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 4567889999 77999999999999999999999998864 268999999999999999999999998 6
Q ss_pred CeEEEEEecCCCCC
Q 023559 75 DRVISVNKAQPKMG 88 (280)
Q Consensus 75 gr~I~V~~a~~k~~ 88 (280)
+++|.|.+++..+.
T Consensus 95 g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 95 KITLYLNFVEKVQW 108 (114)
T ss_dssp EEECEEEEESCCCC
T ss_pred CcEEEEEecccCcc
Confidence 88999999976543
No 158
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=9.7e-18 Score=131.79 Aligned_cols=79 Identities=20% Similarity=0.467 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCC---CCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDS---GRPRGFGFITYADRRAMDDAIREMHGREFGDRVIS 79 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~t---g~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~ 79 (280)
..+.++|||+|||+++|+++|+++|++||+|+ +.|+.++.+ ++++|||||+|+++++|++||+.|+ .|+++.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 35689999999999999999999999999999 888888877 7999999999999999999999984 46677666
Q ss_pred EEecC
Q 023559 80 VNKAQ 84 (280)
Q Consensus 80 V~~a~ 84 (280)
|..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 66544
No 159
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=2.5e-17 Score=138.09 Aligned_cols=78 Identities=19% Similarity=0.300 Sum_probs=71.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCC--eEEEEEec
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGD--RVISVNKA 83 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~g--r~I~V~~a 83 (280)
..+|||+||++.||+++|+++|++||+|++|.|+.. .+++||||+|++.++|++||+.||+.+|.+ ++|+|++|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 457899999999999999999999999999998754 257899999999999999999999999965 99999999
Q ss_pred CCCC
Q 023559 84 QPKM 87 (280)
Q Consensus 84 ~~k~ 87 (280)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 9875
No 160
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=2.5e-17 Score=139.08 Aligned_cols=84 Identities=30% Similarity=0.691 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|.++++|++||+. ++..|.++.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4578999999999999999999999999999999999999999999999999999999999965 889999999999999
Q ss_pred CCCCC
Q 023559 84 QPKMG 88 (280)
Q Consensus 84 ~~k~~ 88 (280)
.++..
T Consensus 90 ~~~~~ 94 (196)
T 1l3k_A 90 VSRED 94 (196)
T ss_dssp CC---
T ss_pred cCccc
Confidence 87643
No 161
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.72 E-value=2.7e-17 Score=136.05 Aligned_cols=80 Identities=25% Similarity=0.593 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecC
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 84 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~ 84 (280)
..++|||.|||+++|+++|+++|++||+|+.|.|+.++.++++++||||+|++.++|++||+.||+..|.+++|.|++|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999974
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=9.5e-18 Score=138.14 Aligned_cols=82 Identities=38% Similarity=0.779 Sum_probs=77.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecC
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 84 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~ 84 (280)
+.++|||+|||+++|+++|+++|++||.|+.|.|+.++.++.++|||||+|.+.++|++||+ |++..|.+++|+|.+|+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35799999999999999999999999999999999999999999999999999999999997 89999999999999999
Q ss_pred CCC
Q 023559 85 PKM 87 (280)
Q Consensus 85 ~k~ 87 (280)
|+.
T Consensus 165 pk~ 167 (167)
T 2cjk_A 165 PRH 167 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 873
No 163
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=2.4e-17 Score=142.70 Aligned_cols=82 Identities=24% Similarity=0.604 Sum_probs=76.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecC
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 84 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~ 84 (280)
..++|||+|||+++|+++|+++|++||.|+.|+|+.++. .+++||||+|++.++|++||+.||+++|.+++|+|++|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC--CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 457999999999999999999999999999999998854 478999999999999999999999999999999999998
Q ss_pred CCCC
Q 023559 85 PKMG 88 (280)
Q Consensus 85 ~k~~ 88 (280)
++.+
T Consensus 180 ~~~~ 183 (213)
T 4f02_A 180 SRKE 183 (213)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 7653
No 164
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=5e-17 Score=131.45 Aligned_cols=79 Identities=20% Similarity=0.327 Sum_probs=71.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccE-EEEEeCCHHHHHHHHHHhcCceeCC--eEEEEE
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGF-GFITYADRRAMDDAIREMHGREFGD--RVISVN 81 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~-aFV~F~~~e~A~~Ai~~lng~~l~g--r~I~V~ 81 (280)
+..+|||+||++.||+++|+++|++||+|++|.|+.. .++| |||+|++.++|++||+.||++.|.+ ++|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3456779999999999999999999999999988764 3678 9999999999999999999999988 899999
Q ss_pred ecCCCCC
Q 023559 82 KAQPKMG 88 (280)
Q Consensus 82 ~a~~k~~ 88 (280)
+|+++.-
T Consensus 102 ~ak~~~l 108 (130)
T 3zzy_A 102 FSKLTSL 108 (130)
T ss_dssp ECSCSSC
T ss_pred ecCCCce
Confidence 9988653
No 165
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.70 E-value=3.2e-17 Score=121.73 Aligned_cols=74 Identities=19% Similarity=0.482 Sum_probs=68.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHHhhc----C-------CeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023559 2 AGKDENRIFVGGLSWNVTERQLENAFDRF----G-------KIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHG 70 (280)
Q Consensus 2 ~~~~~~~lfVgnLp~~vte~dL~~~F~~~----G-------~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng 70 (280)
++.+.++|||+|||+++|+++|+++|++| | +|.+|.|+.+ ++||||+|.++++|++|| .||+
T Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 2 PLGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp CSGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCC
Confidence 45678999999999999999999999999 8 8999998754 689999999999999999 9999
Q ss_pred ceeCCeEEEEEe
Q 023559 71 REFGDRVISVNK 82 (280)
Q Consensus 71 ~~l~gr~I~V~~ 82 (280)
+.|.++.|+|+.
T Consensus 75 ~~~~g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQSLKIRR 86 (87)
T ss_dssp CEETTEECEEEC
T ss_pred CEECCeEEEEeC
Confidence 999999999974
No 166
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.1e-17 Score=131.99 Aligned_cols=78 Identities=22% Similarity=0.238 Sum_probs=71.6
Q ss_pred cEEEEcCC----CCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHH----HHHHHH--HhcCce
Q 023559 7 NRIFVGGL----SWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRA----MDDAIR--EMHGRE 72 (280)
Q Consensus 7 ~~lfVgnL----p~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~----A~~Ai~--~lng~~ 72 (280)
++|||+|| |+.|+|++|+++|++||+|++|.|+.|+.|+.++|||||+|.+ +++ |.+||+ .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 79999999 9999999999999999999999999999999999999999996 333 788888 789999
Q ss_pred eCCeEEEEEecC
Q 023559 73 FGDRVISVNKAQ 84 (280)
Q Consensus 73 l~gr~I~V~~a~ 84 (280)
|.+++|+|++..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999864
No 167
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=4.9e-17 Score=139.31 Aligned_cols=83 Identities=24% Similarity=0.442 Sum_probs=75.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecC
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 84 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~ 84 (280)
+.++|||+|||+++|+++|+++|++||+|++|.|+.++.++++++||||+|.++++|++||+.||++.|.++.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35799999999999999999999999999999999999899999999999999999999999999999999999998876
Q ss_pred CCC
Q 023559 85 PKM 87 (280)
Q Consensus 85 ~k~ 87 (280)
.+.
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 553
No 168
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=8.7e-17 Score=129.08 Aligned_cols=75 Identities=13% Similarity=0.220 Sum_probs=67.8
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccE-EEEEeCCHHHHHHHHHHhcCceeCC--eEEEEEecC
Q 023559 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGF-GFITYADRRAMDDAIREMHGREFGD--RVISVNKAQ 84 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~-aFV~F~~~e~A~~Ai~~lng~~l~g--r~I~V~~a~ 84 (280)
.|||+||++.||+++|+++|++||+|++|.|+.. .|| |||+|++.++|++||+.||+.+|.+ ++|+|++|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4679999999999999999999999999999752 276 9999999999999999999999987 699999999
Q ss_pred CCCC
Q 023559 85 PKMG 88 (280)
Q Consensus 85 ~k~~ 88 (280)
++.-
T Consensus 101 ~~~l 104 (124)
T 2e5i_A 101 PTRL 104 (124)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 8753
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=8.9e-17 Score=131.57 Aligned_cols=81 Identities=21% Similarity=0.460 Sum_probs=75.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecCCC
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 86 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~~k 86 (280)
++|||+|||+++|+++|+++|++||+|++|.|+.++. +++++||||+|.+.++|++||+.||+..|.++.|.|.++.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999998864 678999999999999999999999999999999999999876
Q ss_pred CC
Q 023559 87 MG 88 (280)
Q Consensus 87 ~~ 88 (280)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 170
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=1e-16 Score=131.83 Aligned_cols=80 Identities=28% Similarity=0.565 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCC--eEEEEE
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGD--RVISVN 81 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~g--r~I~V~ 81 (280)
.+.++|||.|||..+++++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||+.||+..|.+ ++|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 467899999999999999999999999999999999999899999999999999999999999999999977 999999
Q ss_pred ec
Q 023559 82 KA 83 (280)
Q Consensus 82 ~a 83 (280)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 171
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.69 E-value=6.9e-17 Score=128.76 Aligned_cols=78 Identities=29% Similarity=0.491 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|| ++|+++|+++|++||+|+.|.|+ ++++||||+|++.++|++||+.||+.+|.+++|+|+++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 46789999996 69999999999999999999986 46789999999999999999999999999999999999
Q ss_pred CCCCCC
Q 023559 84 QPKMGG 89 (280)
Q Consensus 84 ~~k~~~ 89 (280)
+++...
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 987654
No 172
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.69 E-value=1.4e-16 Score=124.18 Aligned_cols=84 Identities=15% Similarity=0.247 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCCCC-----CCcHHHHHHHHhhcCCeEEEEEeecCCC-CCCccEEEEEeCCHHHHHHHHHHhcCceeCC
Q 023559 2 AGKDENRIFVGGLSW-----NVTERQLENAFDRFGKIIECQIMLERDS-GRPRGFGFITYADRRAMDDAIREMHGREFGD 75 (280)
Q Consensus 2 ~~~~~~~lfVgnLp~-----~vte~dL~~~F~~~G~I~~v~i~~d~~t-g~~rG~aFV~F~~~e~A~~Ai~~lng~~l~g 75 (280)
...++++|+|.||.. +.++++|+++|++||+|++|.|+.++.+ ++++|||||+|+++++|++||+.||+..|.+
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 356889999999963 2378999999999999999999998764 6889999999999999999999999999999
Q ss_pred eEEEEEecCC
Q 023559 76 RVISVNKAQP 85 (280)
Q Consensus 76 r~I~V~~a~~ 85 (280)
++|.|+++.+
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999975
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=8.4e-17 Score=133.04 Aligned_cols=84 Identities=23% Similarity=0.480 Sum_probs=76.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCC--CCccEEEEEeCCHHHHHHHHHHhcCceeC---CeEEE
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSG--RPRGFGFITYADRRAMDDAIREMHGREFG---DRVIS 79 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg--~~rG~aFV~F~~~e~A~~Ai~~lng~~l~---gr~I~ 79 (280)
+.++|||+|||+++|+++|+++|++||+|++|+|+.++.++ ++++||||+|.++++|++||+.||+..+. .+.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 67899999999999999999999999999999999999887 89999999999999999999999998875 67888
Q ss_pred EEecCCCCC
Q 023559 80 VNKAQPKMG 88 (280)
Q Consensus 80 V~~a~~k~~ 88 (280)
|.++.++..
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 888876543
No 174
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.68 E-value=1.5e-16 Score=137.85 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=73.1
Q ss_pred CCCcEEEEcCCC-CCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 4 KDENRIFVGGLS-WNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 4 ~~~~~lfVgnLp-~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
.+.++|||+||| +.||+++|+++|++||.|++|+|+.+ .+|||||+|++.++|++||+.||+++|.+++|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 467899999999 89999999999999999999999865 378999999999999999999999999999999999
Q ss_pred cCCCC
Q 023559 83 AQPKM 87 (280)
Q Consensus 83 a~~k~ 87 (280)
++.+.
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 97543
No 175
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=121.28 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=67.4
Q ss_pred CCCcE-EEEcCCCCCCcHHH----HHHHHhhc-CCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeE
Q 023559 4 KDENR-IFVGGLSWNVTERQ----LENAFDRF-GKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRV 77 (280)
Q Consensus 4 ~~~~~-lfVgnLp~~vte~d----L~~~F~~~-G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~ 77 (280)
.+..| |||.|||+.+++++ |+++|++| |+|.+| |+ |+|||+|.+.++|++||+.||+++|.+++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 35566 99999999999988 55899999 599988 22 89999999999999999999999999999
Q ss_pred EEEEecCCCCCC
Q 023559 78 ISVNKAQPKMGG 89 (280)
Q Consensus 78 I~V~~a~~k~~~ 89 (280)
|+|++|+.+..-
T Consensus 76 i~v~~A~~~sd~ 87 (96)
T 2diu_A 76 IIVSFTPKNREL 87 (96)
T ss_dssp CEEESSCCSCCC
T ss_pred EEEEecCCCcce
Confidence 999999887653
No 176
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=9.7e-17 Score=132.08 Aligned_cols=81 Identities=31% Similarity=0.783 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
+++++|||+|||+++|+++|+++|++||+|++|.|+.++.+++++|||||+|.++++|++||+. .+.|.++.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4678999999999999999999999999999999999999999999999999999999999975 56899999999988
Q ss_pred CCC
Q 023559 84 QPK 86 (280)
Q Consensus 84 ~~k 86 (280)
.++
T Consensus 79 ~~~ 81 (167)
T 2cjk_A 79 IPR 81 (167)
T ss_dssp CCH
T ss_pred cch
Confidence 754
No 177
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=2.2e-16 Score=129.35 Aligned_cols=79 Identities=30% Similarity=0.660 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeE--EEEEe
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRV--ISVNK 82 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~--I~V~~ 82 (280)
+.++|||.|||+.+++++|+++|++||.|+.|.|+.++.++.+++||||+|.+.++|++||+.||+..|.++. |.|.+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4689999999999999999999999999999999999989999999999999999999999999999999965 88887
Q ss_pred c
Q 023559 83 A 83 (280)
Q Consensus 83 a 83 (280)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=2.1e-16 Score=130.61 Aligned_cols=79 Identities=30% Similarity=0.565 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeC---CeEEEEE
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFG---DRVISVN 81 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~---gr~I~V~ 81 (280)
+.++|||.|||+++|+++|+++|++||.|+.|.|+.++ ++++++||||+|++.++|++||+.||+..|. +++|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 56899999999999999999999999999999999985 5889999999999999999999999998876 4999999
Q ss_pred ecC
Q 023559 82 KAQ 84 (280)
Q Consensus 82 ~a~ 84 (280)
+|.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 179
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=1.9e-16 Score=131.69 Aligned_cols=78 Identities=22% Similarity=0.421 Sum_probs=72.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecC
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 84 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~ 84 (280)
+.++|||.|||+++|+++|+++|++|+.|..| ..++++++||||+|.+.++|++||+.||++.|.+++|+|++|+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 56899999999999999999999999987765 5678899999999999999999999999999999999999999
Q ss_pred CCC
Q 023559 85 PKM 87 (280)
Q Consensus 85 ~k~ 87 (280)
++.
T Consensus 173 ~k~ 175 (175)
T 1fje_B 173 EKG 175 (175)
T ss_dssp SCC
T ss_pred CCC
Confidence 873
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=3.4e-16 Score=140.15 Aligned_cols=82 Identities=22% Similarity=0.474 Sum_probs=76.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHH----HHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEE
Q 023559 3 GKDENRIFVGGLSWNVTERQLE----NAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVI 78 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~----~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I 78 (280)
..++++|||+|||+++|+++|+ ++|++||.|++|.|+. ++++++||||+|.+.++|++||+.||++.|.++.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4678999999999999999976 8999999999999875 67889999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 023559 79 SVNKAQPKM 87 (280)
Q Consensus 79 ~V~~a~~k~ 87 (280)
+|++++++.
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997655
No 181
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.64 E-value=4.6e-16 Score=140.00 Aligned_cols=83 Identities=24% Similarity=0.398 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCC-CcHHHHHHHHhhcCCeEEEEEeecCC-CCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 4 KDENRIFVGGLSWN-VTERQLENAFDRFGKIIECQIMLERD-SGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 4 ~~~~~lfVgnLp~~-vte~dL~~~F~~~G~I~~v~i~~d~~-tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
.+.++|||.|||+. +|+++|+++|++||.|+.|.|+.+.. |+.+++||||+|.+.++|++|| .||++.|.++.|.|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 45689999999999 99999999999999999999999876 6899999999999999999999 999999999999999
Q ss_pred ecCCCC
Q 023559 82 KAQPKM 87 (280)
Q Consensus 82 ~a~~k~ 87 (280)
+|++|+
T Consensus 287 ~a~~k~ 292 (292)
T 2ghp_A 287 LADKKP 292 (292)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 999874
No 182
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.64 E-value=3.6e-16 Score=138.81 Aligned_cols=79 Identities=19% Similarity=0.344 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCC---------cHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcee-
Q 023559 4 KDENRIFVGGLSWNV---------TERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREF- 73 (280)
Q Consensus 4 ~~~~~lfVgnLp~~v---------te~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l- 73 (280)
.+.++|||+||+..+ +|++|+++|++||+|++|.|+.. ++||||+|.+.++|++||++|+++.|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 467899999999998 89999999999999999999853 78999999999999999999999999
Q ss_pred -----------CCeEEEEEecCCCCC
Q 023559 74 -----------GDRVISVNKAQPKMG 88 (280)
Q Consensus 74 -----------~gr~I~V~~a~~k~~ 88 (280)
.++.|.|.||++++.
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.63 E-value=5.7e-16 Score=135.42 Aligned_cols=80 Identities=18% Similarity=0.348 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 3 GKDENRIFVGGLSW-NVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 3 ~~~~~~lfVgnLp~-~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
..+.++|||+|||+ ++++++|+++|++||.|++|.|+.++ ++||||+|.++++|++||+.||+..|.++.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35678999999999 99999999999999999999999874 6799999999999999999999999999999999
Q ss_pred ecCCCC
Q 023559 82 KAQPKM 87 (280)
Q Consensus 82 ~a~~k~ 87 (280)
+++++.
T Consensus 106 ~a~~~~ 111 (229)
T 2adc_A 106 LSKHQN 111 (229)
T ss_dssp CCSCCC
T ss_pred EecCcc
Confidence 998663
No 184
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=1.2e-15 Score=130.93 Aligned_cols=79 Identities=8% Similarity=0.189 Sum_probs=72.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecCC
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 85 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~~ 85 (280)
.++|||+|||+++|+++|+++|++||+|+.|.|+.+. ++.++|||||+|++.++|++||+.++ .+|.++.|.|.+++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 4799999999999999999999999999999999886 48899999999999999999997664 699999999998865
Q ss_pred C
Q 023559 86 K 86 (280)
Q Consensus 86 k 86 (280)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 185
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.3e-15 Score=116.92 Aligned_cols=82 Identities=21% Similarity=0.417 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCCCCc-----------HHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCc
Q 023559 3 GKDENRIFVGGLSWNVT-----------ERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGR 71 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vt-----------e~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~ 71 (280)
..++++|+|.||....+ +++|+++|++||+|++|.| .++ .++|||||+|++.++|++||+.||+.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 35688999999954432 6899999999999999966 443 37999999999999999999999999
Q ss_pred eeCCeEEEEEecCCCCC
Q 023559 72 EFGDRVISVNKAQPKMG 88 (280)
Q Consensus 72 ~l~gr~I~V~~a~~k~~ 88 (280)
.|.+++|+|+++.++..
T Consensus 88 ~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTD 104 (112)
T ss_dssp EETTEECEEEECCSCCC
T ss_pred EECCcEEEEEEeCCCCC
Confidence 99999999999988654
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.61 E-value=2.4e-15 Score=134.75 Aligned_cols=85 Identities=21% Similarity=0.463 Sum_probs=80.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||+++|+++|+++|++||.|+.|.|+.++.++++++||||+|.+.++|++||+.|++..|.++.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 023559 84 QPKMG 88 (280)
Q Consensus 84 ~~k~~ 88 (280)
.++..
T Consensus 173 ~~~~~ 177 (284)
T 3smz_A 173 DAGQL 177 (284)
T ss_dssp CGGGC
T ss_pred CCCCC
Confidence 87653
No 187
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.61 E-value=2.6e-16 Score=130.76 Aligned_cols=84 Identities=18% Similarity=0.346 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 3 GKDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
..+.++|||+|||+++|+++|+++|++|+.|.. .++.+..++++++||||+|.++++|++|| +||++.|.++.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 467899999999999999999999999987766 34445567789999999999999999999 5999999999999999
Q ss_pred cCCCCC
Q 023559 83 AQPKMG 88 (280)
Q Consensus 83 a~~k~~ 88 (280)
+.++..
T Consensus 88 ~~~~~~ 93 (175)
T 1fje_B 88 PKGRDS 93 (175)
T ss_dssp CCCSSC
T ss_pred CCCccc
Confidence 987643
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=2.2e-15 Score=135.06 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCCCC-cHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEe
Q 023559 4 KDENRIFVGGLSWNV-TERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNK 82 (280)
Q Consensus 4 ~~~~~lfVgnLp~~v-te~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~ 82 (280)
.+.++|||.|||+++ |+++|+++|++||.|+.|.|+.++ +++++++|||+|.+.++|++||+.||+..|.+++|.|.+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 457899999999995 999999999999999999999886 788999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023559 83 AQPKMG 88 (280)
Q Consensus 83 a~~k~~ 88 (280)
++++..
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 998764
No 189
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=2.9e-15 Score=134.10 Aligned_cols=75 Identities=16% Similarity=0.322 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeC-CeEEEEEec
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFG-DRVISVNKA 83 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~-gr~I~V~~a 83 (280)
+.++|||.|||+++|+++|+++|++||.|++|+|+.++ ++||||+|.+.++|++||+.||+..|. ++.|+|++|
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 56899999999999999999999999999999998653 579999999999999999999999999 999999998
Q ss_pred C
Q 023559 84 Q 84 (280)
Q Consensus 84 ~ 84 (280)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 6
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.59 E-value=1.4e-15 Score=129.21 Aligned_cols=78 Identities=17% Similarity=0.330 Sum_probs=73.0
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 5 DENRIFVGGLSW-NVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 5 ~~~~lfVgnLp~-~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+++|||+|||+ ++++++|+++|++||.|++|.|+.++ ++||||+|.++++|++||+.||+..|.++.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998764 679999999999999999999999999999999999
Q ss_pred CCCC
Q 023559 84 QPKM 87 (280)
Q Consensus 84 ~~k~ 87 (280)
.++.
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8664
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.57 E-value=2.8e-15 Score=129.69 Aligned_cols=77 Identities=9% Similarity=0.167 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCe--EEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCe----EE
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKI--IECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDR----VI 78 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I--~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr----~I 78 (280)
+.++|||.|||+++||++|+++|++||.| ++|+|+.++ +..++||||+|++.++|++||+.||+++|.+. +|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 46789999999999999999999999999 889988765 45679999999999999999999999999776 57
Q ss_pred EEEec
Q 023559 79 SVNKA 83 (280)
Q Consensus 79 ~V~~a 83 (280)
.|.+|
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77665
No 192
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.57 E-value=8e-15 Score=114.05 Aligned_cols=82 Identities=15% Similarity=0.287 Sum_probs=72.1
Q ss_pred CCCcEEEEcCC--CCCC--------cHHHHHHHHhhcCCeEEEEEeecCCC--CCCccEEEEEeCCHHHHHHHHHHhcCc
Q 023559 4 KDENRIFVGGL--SWNV--------TERQLENAFDRFGKIIECQIMLERDS--GRPRGFGFITYADRRAMDDAIREMHGR 71 (280)
Q Consensus 4 ~~~~~lfVgnL--p~~v--------te~dL~~~F~~~G~I~~v~i~~d~~t--g~~rG~aFV~F~~~e~A~~Ai~~lng~ 71 (280)
.+++.|.|.|| |.++ .+++|+++|++||+|++|.|++++.+ ..++|||||+|+++++|++||+.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 57889999998 3333 34689999999999999999988765 367999999999999999999999999
Q ss_pred eeCCeEEEEEecCC
Q 023559 72 EFGDRVISVNKAQP 85 (280)
Q Consensus 72 ~l~gr~I~V~~a~~ 85 (280)
.|.+++|+|.++.+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998864
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=3.6e-15 Score=126.55 Aligned_cols=77 Identities=14% Similarity=0.299 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcC-CeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeC-CeEEEEEe
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFG-KIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFG-DRVISVNK 82 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~-gr~I~V~~ 82 (280)
+.++|||.|||+.+|+++|+++|++|| +|+.|.|+.+ .+++|||+|++.++|++||+.||++.|. +++|+|.+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 478999999999999999999999999 9999999764 2689999999999999999999999999 99999999
Q ss_pred cCCC
Q 023559 83 AQPK 86 (280)
Q Consensus 83 a~~k 86 (280)
++++
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9875
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=8.1e-15 Score=128.09 Aligned_cols=77 Identities=14% Similarity=0.299 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcC-CeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeC-CeEEEEEe
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFG-KIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFG-DRVISVNK 82 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~-gr~I~V~~ 82 (280)
+.++|||.|||+++++++|+++|++|| +|+.|.|+.. .++||||+|++.++|++||+.||+..|. +++|+|.+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468999999999999999999999999 9999999653 3689999999999999999999999999 99999999
Q ss_pred cCCC
Q 023559 83 AQPK 86 (280)
Q Consensus 83 a~~k 86 (280)
++++
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 9875
No 195
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.56 E-value=1.2e-14 Score=119.92 Aligned_cols=77 Identities=18% Similarity=0.456 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhc----C-------CeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCce
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRF----G-------KIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGRE 72 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~----G-------~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~ 72 (280)
.+.++|||+|||+++|+++|+++|++| + .|.++.+.. +++||||+|.++++|++|| +||++.
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 367899999999999999999999999 6 777777753 4789999999999999999 999999
Q ss_pred eCCeEEEEEecCCCC
Q 023559 73 FGDRVISVNKAQPKM 87 (280)
Q Consensus 73 l~gr~I~V~~a~~k~ 87 (280)
|.+++|.|.++.+..
T Consensus 75 ~~g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQ 89 (172)
T ss_dssp ETTEECEEECCSSCC
T ss_pred ecCceeeecCCcccC
Confidence 999999999987654
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=1.5e-14 Score=128.93 Aligned_cols=84 Identities=24% Similarity=0.364 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcC-ceeC---CeEEE
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHG-REFG---DRVIS 79 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng-~~l~---gr~I~ 79 (280)
.+.++|||+|||+.+|+++|+++|++||.|+.|.|+.+ .++++++||||+|.+.++|++||+.||+ ..+. +++|.
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 45789999999999999999999999999999999999 5899999999999999999999999955 4444 89999
Q ss_pred EEecCCCCC
Q 023559 80 VNKAQPKMG 88 (280)
Q Consensus 80 V~~a~~k~~ 88 (280)
|.++.+...
T Consensus 173 v~~~~~~~~ 181 (261)
T 3sde_A 173 VEPMEQFDD 181 (261)
T ss_dssp EEECCCEES
T ss_pred EeeccccCc
Confidence 999987643
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.55 E-value=9.9e-15 Score=131.23 Aligned_cols=84 Identities=11% Similarity=0.237 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcC-CeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFG-KIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
+.++|||+|||+++|+++|+++|++|| .|+.|.|+.++. +.+++||||+|.+.++|++||+.||++.|.++.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999998865 778999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 023559 84 QPKMGG 89 (280)
Q Consensus 84 ~~k~~~ 89 (280)
.++...
T Consensus 195 ~~~~~~ 200 (292)
T 2ghp_A 195 NPLEKS 200 (292)
T ss_dssp CCC---
T ss_pred CCCccc
Confidence 877543
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=1e-14 Score=129.91 Aligned_cols=76 Identities=32% Similarity=0.539 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.+.++|||+|||++||+++|+++|++||.|+.|.|+++ ++||||+|.+.++|++||+.||++.|.++.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 34579999999999999999999999999999999643 689999999999999999999999999999999998
Q ss_pred CC
Q 023559 84 QP 85 (280)
Q Consensus 84 ~~ 85 (280)
.+
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.54 E-value=2.2e-14 Score=121.08 Aligned_cols=78 Identities=18% Similarity=0.445 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhc----C-------CeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCce
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRF----G-------KIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGRE 72 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~----G-------~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~ 72 (280)
...++|||+|||+++|+++|+++|++| + .|..+.+. ++++||||+|.++++|++|| .||++.
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 367899999999999999999999999 5 56666664 35789999999999999999 899999
Q ss_pred eCCeEEEEEecCCCCC
Q 023559 73 FGDRVISVNKAQPKMG 88 (280)
Q Consensus 73 l~gr~I~V~~a~~k~~ 88 (280)
|.++.|.|.++.++..
T Consensus 75 ~~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQP 90 (198)
T ss_dssp ETTEEEEEECCCCCCC
T ss_pred EcCceEEEeCCCCCCC
Confidence 9999999999877643
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=4.5e-15 Score=115.26 Aligned_cols=72 Identities=14% Similarity=0.357 Sum_probs=63.9
Q ss_pred EcCCCCCCcHHHHHHHH------------hhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEE
Q 023559 11 VGGLSWNVTERQLENAF------------DRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVI 78 (280)
Q Consensus 11 VgnLp~~vte~dL~~~F------------~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I 78 (280)
+.+||+.+++++|+++| ++||+|++|.|+.++. ++++|||||+|+++++|++||+.||+..|.+++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777888777666 9999999999998764 6889999999999999999999999999999999
Q ss_pred EEEec
Q 023559 79 SVNKA 83 (280)
Q Consensus 79 ~V~~a 83 (280)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.54 E-value=8.6e-15 Score=116.39 Aligned_cols=82 Identities=15% Similarity=0.238 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCC--C---CcHHHHHHHHhhcCCeEEEEEeecCC----CCCCccEEEEEeCCHHHHHHHHHHhcCceeC
Q 023559 4 KDENRIFVGGLSW--N---VTERQLENAFDRFGKIIECQIMLERD----SGRPRGFGFITYADRRAMDDAIREMHGREFG 74 (280)
Q Consensus 4 ~~~~~lfVgnLp~--~---vte~dL~~~F~~~G~I~~v~i~~d~~----tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~ 74 (280)
.++++|+|.||-. + -.+++|+++|++||+|++|.|+.++. +++++||+||+|++.++|++||+.||+..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4788999999842 2 24689999999999999999998865 3567899999999999999999999999999
Q ss_pred CeEEEEEecCC
Q 023559 75 DRVISVNKAQP 85 (280)
Q Consensus 75 gr~I~V~~a~~ 85 (280)
+++|.|+++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999998864
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=8.1e-14 Score=107.60 Aligned_cols=79 Identities=9% Similarity=0.170 Sum_probs=65.7
Q ss_pred CCcEEEEcCCC-------CCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeE
Q 023559 5 DENRIFVGGLS-------WNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRV 77 (280)
Q Consensus 5 ~~~~lfVgnLp-------~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~ 77 (280)
..++|.|.-.. ..++|++|+++|++||+|++|.|+ .+++|||||+|++.++|++||+.++ .+.+++
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~ 81 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNP 81 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSB
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCe
Confidence 35567666543 458999999999999999999998 2578999999999999999998854 467999
Q ss_pred EEEEecCCCCCCC
Q 023559 78 ISVNKAQPKMGGE 90 (280)
Q Consensus 78 I~V~~a~~k~~~~ 90 (280)
|+|++++++....
T Consensus 82 l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 82 LKISWLEGQPQDA 94 (100)
T ss_dssp CEEECSSCCCCCC
T ss_pred EEEEEccCCCCCC
Confidence 9999998876543
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.50 E-value=3.5e-14 Score=132.15 Aligned_cols=77 Identities=16% Similarity=0.255 Sum_probs=66.7
Q ss_pred CCCCCcEEEEcC--CCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeC---Ce
Q 023559 2 AGKDENRIFVGG--LSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFG---DR 76 (280)
Q Consensus 2 ~~~~~~~lfVgn--Lp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~---gr 76 (280)
+++++.+|||+| |++.|||++|+++|++||+|++|.|+. .|+||||+|++.++|++||+.||+++|. ++
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 467889999999 578999999999999999999987753 4789999999999999999999999882 34
Q ss_pred --EEEEEecC
Q 023559 77 --VISVNKAQ 84 (280)
Q Consensus 77 --~I~V~~a~ 84 (280)
+|.|.+++
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 56777764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=1.8e-12 Score=102.33 Aligned_cols=79 Identities=13% Similarity=0.192 Sum_probs=66.8
Q ss_pred CCCCCcEEEEcCCCCCC----------cHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCc
Q 023559 2 AGKDENRIFVGGLSWNV----------TERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGR 71 (280)
Q Consensus 2 ~~~~~~~lfVgnLp~~v----------te~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~ 71 (280)
+..+++.|.|.||=... .+++|+++|++||+|++|.|.++. ++||+||+|++.++|++||+.||+.
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 34577889999873221 235789999999999999987653 5899999999999999999999999
Q ss_pred eeCCeEEEEEecC
Q 023559 72 EFGDRVISVNKAQ 84 (280)
Q Consensus 72 ~l~gr~I~V~~a~ 84 (280)
.|.++.|.|+++.
T Consensus 79 ~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 79 WFAGKMITAAYVP 91 (114)
T ss_dssp EETTEECEEEEEC
T ss_pred EECCEEEEEEEEc
Confidence 9999999999986
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=7.6e-12 Score=99.69 Aligned_cols=76 Identities=11% Similarity=0.120 Sum_probs=68.2
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC-HHHHHHHHHHhc--CceeCCeEE
Q 023559 3 GKDENRIFVGGLSWN-VTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD-RRAMDDAIREMH--GREFGDRVI 78 (280)
Q Consensus 3 ~~~~~~lfVgnLp~~-vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~-~e~A~~Ai~~ln--g~~l~gr~I 78 (280)
-.+.+.|||+||+++ |++++|+++|++||+|+.|.|+.+.. .|||+|.+ +++|++||++|| +.+|++..|
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 356789999999999 99999999999999999999988765 69999999 899999999995 678899999
Q ss_pred EEEecC
Q 023559 79 SVNKAQ 84 (280)
Q Consensus 79 ~V~~a~ 84 (280)
+|++..
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 988665
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=7.4e-12 Score=94.49 Aligned_cols=74 Identities=19% Similarity=0.368 Sum_probs=63.8
Q ss_pred CCCcEEEEcCCCC----CCcH----HHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCC
Q 023559 4 KDENRIFVGGLSW----NVTE----RQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGD 75 (280)
Q Consensus 4 ~~~~~lfVgnLp~----~vte----~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~g 75 (280)
.+.-||+|.-++. ++.. .+|.+.|++||+|..|+|+.+ .+||+|.+.++|++||+ ||+++|.+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 5678999987762 2323 568999999999999999987 38999999999999997 99999999
Q ss_pred eEEEEEecCCC
Q 023559 76 RVISVNKAQPK 86 (280)
Q Consensus 76 r~I~V~~a~~k 86 (280)
+.|+|++++|.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999999875
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=9e-11 Score=89.03 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=62.7
Q ss_pred CCCcEEEEcCCCCC-----CcH----HHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeC
Q 023559 4 KDENRIFVGGLSWN-----VTE----RQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFG 74 (280)
Q Consensus 4 ~~~~~lfVgnLp~~-----vte----~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~ 74 (280)
.+.-||+|.-++.. +.. .+|.+.|++||+|+.|+|+.++ +||+|.+.++|++||+ ||+++|.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 57789999988743 212 4588999999999999999873 9999999999999997 9999999
Q ss_pred CeEEEEEecCC
Q 023559 75 DRVISVNKAQP 85 (280)
Q Consensus 75 gr~I~V~~a~~ 85 (280)
++.|+|++..|
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998654
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.96 E-value=1.2e-09 Score=94.63 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=60.8
Q ss_pred CcHHHHHHHHhhcCCeEEEEEeecCC----CCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecCC
Q 023559 18 VTERQLENAFDRFGKIIECQIMLERD----SGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQP 85 (280)
Q Consensus 18 vte~dL~~~F~~~G~I~~v~i~~d~~----tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~~ 85 (280)
-.+++|.+.|++||+|++|.|+.+.. ++.++|++||+|.+.++|++||+.||+..|.+++|.|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 35678999999999999999986544 458899999999999999999999999999999999998753
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.59 E-value=2.4e-07 Score=71.84 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=65.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhc-----CCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEE
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRF-----GKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVI 78 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~-----G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I 78 (280)
+...+|-|-|||..|+...|+.+++.+ +.|++|.|+.+.. =|+|+|++...|.+|.-+|++.+|.+++|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 347889999999999999999999999 9999999988743 79999999999999988999999999999
Q ss_pred EEE
Q 023559 79 SVN 81 (280)
Q Consensus 79 ~V~ 81 (280)
+|-
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 885
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.27 E-value=2.7e-06 Score=65.38 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=65.3
Q ss_pred CCCcEEEEcCCCCCC-c----HHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEE
Q 023559 4 KDENRIFVGGLSWNV-T----ERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVI 78 (280)
Q Consensus 4 ~~~~~lfVgnLp~~v-t----e~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I 78 (280)
.-+++|+|+||+.+| + .+.|+++|.+|.++....+++. --=..|.|.++++|.+|-.+||++.|++++|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 457899999999876 2 2567899999999888777643 2257899999999999999999999999999
Q ss_pred EEEecCCCC
Q 023559 79 SVNKAQPKM 87 (280)
Q Consensus 79 ~V~~a~~k~ 87 (280)
+|-++++..
T Consensus 77 r~YFgq~~~ 85 (104)
T 1wey_A 77 KLYFAQTLH 85 (104)
T ss_dssp EEECCCCSS
T ss_pred EEEecCCCC
Confidence 999998543
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.9e-05 Score=60.57 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=62.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhc-----CCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEE
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRF-----GKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVI 78 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~-----G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I 78 (280)
...++|.|.|||+.+.++.|+-+|++- |+|+.|+... .-|+|+|.+.+.|++.|+. ..+.|++..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 456899999999999999999999872 5888887754 2799999999999999843 4578999999
Q ss_pred EEEecCCCCC
Q 023559 79 SVNKAQPKMG 88 (280)
Q Consensus 79 ~V~~a~~k~~ 88 (280)
.|....++..
T Consensus 77 sV~P~~~~~~ 86 (104)
T 2dhx_A 77 SLRPAPPRAP 86 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEcCCCCCc
Confidence 9987766543
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.97 E-value=5e-05 Score=57.12 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=62.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCC--CccEEEEEeCCHHHHHHHHHHhcCceeCC-----eEEE
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGR--PRGFGFITYADRRAMDDAIREMHGREFGD-----RVIS 79 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~--~rG~aFV~F~~~e~A~~Ai~~lng~~l~g-----r~I~ 79 (280)
++|.|.+||+.+||+++.+.+....++.....+..+.+.+ ...-|+|.|.+.+++...++.++++.|.+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 5899999999999999999999888777777666654432 33579999999999999999999998732 2346
Q ss_pred EEecC
Q 023559 80 VNKAQ 84 (280)
Q Consensus 80 V~~a~ 84 (280)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 77764
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.86 E-value=3.7e-05 Score=58.29 Aligned_cols=55 Identities=15% Similarity=0.275 Sum_probs=46.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMH 69 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~ln 69 (280)
.+.++| .+|.++...||.++|+.||.| .|.++.|. .|||.|.+++.|..||..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 466777 999999999999999999855 46666664 79999999999999998774
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.75 E-value=3.7e-05 Score=58.48 Aligned_cols=55 Identities=15% Similarity=0.251 Sum_probs=46.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMH 69 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~ln 69 (280)
++.|+| .+|.++...||.++|+.|| -..|.++.|. .|||.|.+++.|..||..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 345666 9999999999999999998 4457777664 79999999999999998774
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.67 E-value=0.00023 Score=55.95 Aligned_cols=71 Identities=21% Similarity=0.368 Sum_probs=56.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCC-eEEEEEec
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGD-RVISVNKA 83 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~g-r~I~V~~a 83 (280)
..+.|.|-++|+..+ ..|..+|++||+|.+..... ...+..|.|++..+|++|| ..|++.|.+ ..|-|...
T Consensus 23 ~~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQASA-SYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHHH-HHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEEC
Confidence 367889999999864 55667899999999887621 1239999999999999999 669999974 66766654
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.39 E-value=0.00024 Score=53.90 Aligned_cols=80 Identities=15% Similarity=0.064 Sum_probs=57.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCC--CccEEEEEeCCHHHHHHHHHHhcCceeCC-----eE
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGR--PRGFGFITYADRRAMDDAIREMHGREFGD-----RV 77 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~--~rG~aFV~F~~~e~A~~Ai~~lng~~l~g-----r~ 77 (280)
.+-+|.|..||+.+||+++.+.+..+-++.....+..+.+-+ .-.-|+|.|.+.+++....+.+++..|.+ .+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 356899999999999999888887665544333333333322 22468999999999999999999998732 24
Q ss_pred EEEEecC
Q 023559 78 ISVNKAQ 84 (280)
Q Consensus 78 I~V~~a~ 84 (280)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 5677764
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.09 E-value=0.00054 Score=54.68 Aligned_cols=79 Identities=23% Similarity=0.307 Sum_probs=55.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEE-EEee--------cCCCCC-----CccEEEEEeCCHHHHHHHHHHhc
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIEC-QIML--------ERDSGR-----PRGFGFITYADRRAMDDAIREMH 69 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v-~i~~--------d~~tg~-----~rG~aFV~F~~~e~A~~Ai~~ln 69 (280)
..+..|.|-++|++.+.. |.+.|++||.|.+- .+.. .+.+.+ ...+..|+|++..+|++|| ..|
T Consensus 5 ~~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LEN 82 (132)
T ss_dssp ---CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTT
T ss_pred cCceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhC
Confidence 346678888998877655 55679999998772 1111 000011 2358899999999999999 679
Q ss_pred CceeCCeEEEEEecC
Q 023559 70 GREFGDRVISVNKAQ 84 (280)
Q Consensus 70 g~~l~gr~I~V~~a~ 84 (280)
+++|.+..|-|.+..
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999988887664
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.79 E-value=0.0013 Score=53.01 Aligned_cols=43 Identities=9% Similarity=0.113 Sum_probs=32.5
Q ss_pred EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEE
Q 023559 35 ECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVIS 79 (280)
Q Consensus 35 ~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~ 79 (280)
.++|+++.. +++|||||+|.+.++|++||+.+++.......+.
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~ 44 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWT 44 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEE
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCccc
Confidence 456777654 5899999999999999999999886544333333
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.61 E-value=0.00091 Score=64.20 Aligned_cols=56 Identities=7% Similarity=0.213 Sum_probs=42.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~ 67 (280)
..+|||. +|..+++.+|.++|++||.|.++.+..++ .-||.|||.+.++|++++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 4689997 89999999999999999999998877543 24999999999999977643
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.38 E-value=0.0015 Score=52.43 Aligned_cols=41 Identities=7% Similarity=0.084 Sum_probs=37.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHh-cCceeCCeEEEEEecCCC
Q 023559 45 GRPRGFGFITYADRRAMDDAIREM-HGREFGDRVISVNKAQPK 86 (280)
Q Consensus 45 g~~rG~aFV~F~~~e~A~~Ai~~l-ng~~l~gr~I~V~~a~~k 86 (280)
.+.+|+++|+|.+.++|++||++| |+.+|.+ .|.|+++.++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 467899999999999999999999 9999999 9999988753
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.39 E-value=0.077 Score=51.37 Aligned_cols=55 Identities=15% Similarity=0.275 Sum_probs=45.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMH 69 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~ln 69 (280)
+..++|+ +|..+...+|.++|+.|+.| .|.++.+. .|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 4566666 99999999999999999854 55555442 79999999999999998885
No 222
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=92.29 E-value=0.0044 Score=50.46 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=15.2
Q ss_pred HHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeC
Q 023559 21 RQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYA 56 (280)
Q Consensus 21 ~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~ 56 (280)
++|.++|...|.|+. ... .+||+||+.+
T Consensus 2 ~~~~~l~~~~G~Vkw---fn~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKW---FNV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEE---EET-----TTTEEEEEEE
T ss_pred CcccccccceeEEEE---EEC-----CCCeeEEeeC
Confidence 455666666665553 222 3789999876
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=92.08 E-value=0.33 Score=34.14 Aligned_cols=68 Identities=13% Similarity=0.228 Sum_probs=44.2
Q ss_pred EEEEcCC-CCCCcHHHHHHHHhhcC-----CeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 8 RIFVGGL-SWNVTERQLENAFDRFG-----KIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 8 ~lfVgnL-p~~vte~dL~~~F~~~G-----~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
+|||..= ...++..+|..++..-+ .|-.|.|..+ |.||+... +.|+.+++.|+...+.++.|.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 5666422 23467778888777544 4566777543 89999875 45788899999999999999998
Q ss_pred ecC
Q 023559 82 KAQ 84 (280)
Q Consensus 82 ~a~ 84 (280)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 775
No 224
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=90.15 E-value=0.16 Score=31.95 Aligned_cols=21 Identities=48% Similarity=1.236 Sum_probs=18.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 023559 117 QDDCFKCGRPGHWARDCPSAV 137 (280)
Q Consensus 117 ~~~~~~~g~~g~~~~~~~~~~ 137 (280)
...|+.|+..|||+++||...
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSC
T ss_pred CCeeeECCCCCcchhhCcCCc
Confidence 567999999999999999753
No 225
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=89.94 E-value=4.3 Score=30.10 Aligned_cols=73 Identities=15% Similarity=0.219 Sum_probs=55.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCc-------eeCCe
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGR-------EFGDR 76 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~-------~l~gr 76 (280)
+.++.|-|-|||..+-..++.-.....|---.|..+ -|-|.|.|.+.++...||+.|-+. +|.+.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgq 81 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQ 81 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcce
Confidence 567889999999999988887777777766666654 246999999999999999877433 45666
Q ss_pred EEEEEecC
Q 023559 77 VISVNKAQ 84 (280)
Q Consensus 77 ~I~V~~a~ 84 (280)
.+.|-...
T Consensus 82 icdvisti 89 (129)
T 4eyt_A 82 ICDVISTI 89 (129)
T ss_dssp EEEEECCC
T ss_pred eeeeeecC
Confidence 66664443
No 226
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=89.73 E-value=0.18 Score=28.40 Aligned_cols=19 Identities=47% Similarity=1.170 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 023559 118 DDCFKCGRPGHWARDCPSA 136 (280)
Q Consensus 118 ~~~~~~g~~g~~~~~~~~~ 136 (280)
..|+.|+..+||+++|+..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 3599999999999999965
No 227
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=86.66 E-value=0.2 Score=33.85 Aligned_cols=22 Identities=45% Similarity=1.143 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 023559 115 GGQDDCFKCGRPGHWARDCPSA 136 (280)
Q Consensus 115 gg~~~~~~~g~~g~~~~~~~~~ 136 (280)
.....|+.|+..|||+++||..
T Consensus 21 ~~~~~C~~Cge~GH~ardCp~~ 42 (56)
T 1u6p_A 21 LDRDQCAYCKEKGHWAKDCPKK 42 (56)
T ss_dssp CCTTBCSSSCCBSSCGGGCTTC
T ss_pred CCCCcceeCCCCCcccccCcCC
Confidence 3457899999999999999975
No 228
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.01 E-value=0.85 Score=30.58 Aligned_cols=19 Identities=47% Similarity=1.527 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 023559 117 QDDCFKCGRPGHWARDCPS 135 (280)
Q Consensus 117 ~~~~~~~g~~g~~~~~~~~ 135 (280)
.-.|+.|+..|||..+||.
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSG
T ss_pred CCccccCCCcCcccccCCC
Confidence 3469999999999999994
No 229
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=79.82 E-value=3.9 Score=27.52 Aligned_cols=57 Identities=12% Similarity=0.073 Sum_probs=42.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREM 68 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~l 68 (280)
...+|.|.++.-..-...|++.+.+ -.|..+.|... ..-+.|+|.+.++..++|+.+
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc
Confidence 4567889999888888999999999 88888877543 336788888566666677553
No 230
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=72.85 E-value=17 Score=24.64 Aligned_cols=59 Identities=15% Similarity=0.253 Sum_probs=41.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHHHHHHHHHh
Q 023559 4 KDENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDDAIREM 68 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~A~~Ai~~l 68 (280)
....+|.|.++.-......|++.+.+.-.|..+.+... ...+.|+|.. .+...++|+.+
T Consensus 8 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 8 EVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp CEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred ceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 33456788888877777789999998888888877543 2368888853 34455556544
No 231
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=72.23 E-value=17 Score=23.89 Aligned_cols=56 Identities=11% Similarity=0.242 Sum_probs=41.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeC----CHHHHHHHHHHh
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYA----DRRAMDDAIREM 68 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~----~~e~A~~Ai~~l 68 (280)
.+|.|.++.-..-...|++.+.+.-.|..+.|.... .-+.|+|+ +.++..++|+.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ------NRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHC
Confidence 467888888777778899999998888888876542 36888885 455666666554
No 232
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=71.45 E-value=1.2 Score=25.50 Aligned_cols=19 Identities=42% Similarity=1.076 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 023559 118 DDCFKCGRPGHWARDCPSA 136 (280)
Q Consensus 118 ~~~~~~g~~g~~~~~~~~~ 136 (280)
-.|++|+..||++.+|+..
T Consensus 7 ~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSS
T ss_pred CEEEECCccccCHhHCccc
Confidence 4599999999999999853
No 233
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=67.67 E-value=23 Score=23.32 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=40.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHHHHHHHHHh
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDDAIREM 68 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~A~~Ai~~l 68 (280)
..+|.|.++.-......|++.+.+.-.|..+.+.... ..+.|+|.. .+...++|+.+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEE------KNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCCCCHHHHHHHHHHC
Confidence 4567788888877788899999988777777765442 368888864 34455566554
No 234
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=67.36 E-value=16 Score=23.67 Aligned_cols=56 Identities=14% Similarity=0.330 Sum_probs=39.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC---HHHHHHHHHH
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD---RRAMDDAIRE 67 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~---~e~A~~Ai~~ 67 (280)
..+|.|.++.-..-...|++.+.+.-.|..+.+.... .-+.|+|.. .++..++|+.
T Consensus 3 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 3 TINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHHH
Confidence 3467888888877788899999998888888876543 367788853 3444555543
No 235
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=67.33 E-value=0.39 Score=45.43 Aligned_cols=15 Identities=20% Similarity=-0.024 Sum_probs=12.7
Q ss_pred HHHHHhhcCCeEEEE
Q 023559 23 LENAFDRFGKIIECQ 37 (280)
Q Consensus 23 L~~~F~~~G~I~~v~ 37 (280)
|.+||.++++|..|.
T Consensus 9 L~~lF~p~pPl~~~~ 23 (437)
T 3pgw_S 9 LLALFAPRDPIPYLP 23 (437)
T ss_pred HHHhcCCCCCCcCCC
Confidence 778999999988873
No 236
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=67.19 E-value=7 Score=29.31 Aligned_cols=66 Identities=11% Similarity=0.112 Sum_probs=44.5
Q ss_pred CCCCCCcHHHHHHHH-hhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecCCCC
Q 023559 13 GLSWNVTERQLENAF-DRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPKM 87 (280)
Q Consensus 13 nLp~~vte~dL~~~F-~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~~k~ 87 (280)
.++..++-++|.... ..||.-..+..+ +. -+.|-..+.++..+||+.|+-. ..-+.|+|-+..++.
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~~ 89 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVINGS 89 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECCC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCCC
Confidence 466777777776544 567877777665 22 3678999999999999988754 333445555555554
No 237
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=67.15 E-value=22 Score=22.81 Aligned_cols=58 Identities=16% Similarity=0.318 Sum_probs=39.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHHHHHHHHHh
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDDAIREM 68 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~A~~Ai~~l 68 (280)
...+|.|.++.-......|+..+.+.-.|..+.+... ...+.|+|.. .+...++|+.+
T Consensus 6 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLA------TETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 3456788888877777889999998878888776543 2367788863 34445555443
No 238
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=68.65 E-value=1.3 Score=33.61 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=35.3
Q ss_pred CCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEE--EEEeCCHHHHHHHHHHhcCc
Q 023559 14 LSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFG--FITYADRRAMDDAIREMHGR 71 (280)
Q Consensus 14 Lp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~a--FV~F~~~e~A~~Ai~~lng~ 71 (280)
|-...++++|..+..+.. +..+.|......++. -|. +=.|.+.++|++||+.|...
T Consensus 30 L~a~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 30 LSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPAD 87 (106)
Confidence 333455677888777774 455665544333332 232 33789999999999988743
No 239
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=63.59 E-value=32 Score=25.25 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=34.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHh-------hcCCeEEEEEeecCCC---CCCcc--E-EEEEeCCHHHHHH
Q 023559 8 RIFVGGLSWNVTERQLENAFD-------RFGKIIECQIMLERDS---GRPRG--F-GFITYADRRAMDD 63 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~-------~~G~I~~v~i~~d~~t---g~~rG--~-aFV~F~~~e~A~~ 63 (280)
.|.+-.|...++++++.++.+ +.-.|+.+.+-.+... ...++ + .+++|++.++.+.
T Consensus 11 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (108)
T 1tr0_A 11 HTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQE 79 (108)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHH
Confidence 444557888888877554433 4567888877666432 22333 3 3568888887654
No 240
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=62.90 E-value=25 Score=21.87 Aligned_cols=55 Identities=9% Similarity=0.166 Sum_probs=37.3
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC---HHHHHHHHHHh
Q 023559 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD---RRAMDDAIREM 68 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~---~e~A~~Ai~~l 68 (280)
+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|.. .+...++|+.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 5667777766667789999998878888877543 2367788863 34445555443
No 241
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=62.86 E-value=27 Score=22.38 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=36.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD 57 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~ 57 (280)
...+|.|.++.-......|++.+.+.-.|..+.+... ...+.|+|..
T Consensus 4 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~ 50 (75)
T 1yjr_A 4 GVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA------TNKAHIKYDP 50 (75)
T ss_dssp CCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT------TTEEEEEECT
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec------CCEEEEEECC
Confidence 4567889999888778889999998888888877543 2367888864
No 242
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=61.07 E-value=28 Score=21.98 Aligned_cols=54 Identities=9% Similarity=0.253 Sum_probs=37.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCH---HHHHHHHHH
Q 023559 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADR---RAMDDAIRE 67 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~---e~A~~Ai~~ 67 (280)
++.|.++.-..-...|++.+.+.-.|..+.+.... ..+.|+|... ++..++|+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPK------GTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTT------TEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCHHHHHHHHHH
Confidence 57788887776778899999988888888776442 3677888643 344444443
No 243
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=59.53 E-value=31 Score=25.54 Aligned_cols=62 Identities=11% Similarity=0.130 Sum_probs=41.6
Q ss_pred CCCCCCcHHHHHHHH-hhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 13 GLSWNVTERQLENAF-DRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 13 nLp~~vte~dL~~~F-~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
-++.-+.-++|+... ..||....+..+.+ --.|-..+.++..+||+.|+-. ..-+.|+|-+.
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs-~~~kSLrIlL~ 97 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLV 97 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHC-SSCCSEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccC-ccccceEEEEe
Confidence 456667777776554 46788777776643 3678899999999999887643 23333444443
No 244
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=58.84 E-value=21 Score=24.90 Aligned_cols=57 Identities=12% Similarity=0.282 Sum_probs=39.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHHHHHHHHHh
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDDAIREM 68 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~A~~Ai~~l 68 (280)
..+|.|.++.-......|++.+.+.-.|..+.|.... ..+.|+|.. .++..++|+.+
T Consensus 4 ~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~------~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 4 TATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLEN------RSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTT------TEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCCHHHHHHHHHhc
Confidence 3467788887766667899999988888888876542 368888863 34555556544
No 245
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=58.02 E-value=32 Score=21.65 Aligned_cols=57 Identities=14% Similarity=0.325 Sum_probs=38.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCH---HHHHHHHHHh
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADR---RAMDDAIREM 68 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~---e~A~~Ai~~l 68 (280)
..+|.|.++.-......|++.+.+.-.|..+.+.... ..+.|+|... +...++|+.+
T Consensus 4 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 4 TINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCCCHHHHHHHHHHc
Confidence 3467788887766667899999988888888776442 3678888743 3344455443
No 246
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=56.70 E-value=37 Score=24.70 Aligned_cols=54 Identities=13% Similarity=0.219 Sum_probs=34.1
Q ss_pred EEEcCCCCCCcHHHHHHHHhhcCCe-----EEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023559 9 IFVGGLSWNVTERQLENAFDRFGKI-----IECQIMLERDSGRPRGFGFITYADRRAMDDAIREMH 69 (280)
Q Consensus 9 lfVgnLp~~vte~dL~~~F~~~G~I-----~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~ln 69 (280)
|.+-.+|..++-++|.+.+...=.+ -.|+++ |.+ + -+|++.+.++.+.||+.+.
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~-DEe-G-----D~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI-DEE-G-----DPCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC-CSS-S-----CCEECCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE-CCC-C-----CcccccCHHHHHHHHHHHH
Confidence 4556678899988877655422122 223332 222 2 3589999999999997554
No 247
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=56.33 E-value=34 Score=25.03 Aligned_cols=65 Identities=15% Similarity=0.167 Sum_probs=43.3
Q ss_pred CCCCCCcHHHHHHHH-hhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecCCC
Q 023559 13 GLSWNVTERQLENAF-DRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQPK 86 (280)
Q Consensus 13 nLp~~vte~dL~~~F-~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~~k 86 (280)
-++.-+.-++|+... ..||...++..+.+ --.|-..+.++..+||+.|+- ...-+.|+|-+..++
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDr-s~~mkSLRIlL~~~~ 84 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDR-SSSMKSLRILLLSQD 84 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHH-STTTTEEEEEEEECS
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhcc-CccccceEEEEEcCC
Confidence 456667777776544 46787777766533 356888999999999988763 334445555555444
No 248
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=56.24 E-value=39 Score=22.06 Aligned_cols=57 Identities=9% Similarity=0.117 Sum_probs=38.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcC-CeEEEEEeecCCCCCCccEEEEEeC-CHHHHHHHHHHh
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFG-KIIECQIMLERDSGRPRGFGFITYA-DRRAMDDAIREM 68 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFV~F~-~~e~A~~Ai~~l 68 (280)
...+|.|. +.-..-...|++.+.+.- .|..+.+.... .-+.|++. +.++..++|+.+
T Consensus 5 ~~~~~~v~-m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~------~~~~v~~~~~~~~i~~~i~~~ 63 (73)
T 1cc8_A 5 KHYQFNVV-MTCSGCSGAVNKVLTKLEPDVSKIDISLEK------QLVDVYTTLPYDFILEKIKKT 63 (73)
T ss_dssp EEEEEEEC-CCSHHHHHHHHHHHHTTTTSEEEEEEETTT------TEEEEEESSCHHHHHHHHHTT
T ss_pred eEEEEEEe-eECHHHHHHHHHHHHhCCCCceEEEEECCC------CEEEEEEeCCHHHHHHHHHHh
Confidence 44567776 666656678999999998 88888876542 25667664 445556666543
No 249
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=55.98 E-value=27 Score=25.29 Aligned_cols=35 Identities=9% Similarity=0.193 Sum_probs=26.1
Q ss_pred CeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCc
Q 023559 32 KIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGR 71 (280)
Q Consensus 32 ~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~ 71 (280)
+|.+|.++. ..+||.||+++..+++..+|+.+.+.
T Consensus 39 ~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASE-----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 466666553 37899999999998888888766543
No 250
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=55.21 E-value=6.8 Score=26.05 Aligned_cols=21 Identities=38% Similarity=0.904 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 023559 117 QDDCFKCGRPGHWARDCPSAV 137 (280)
Q Consensus 117 ~~~~~~~g~~g~~~~~~~~~~ 137 (280)
...|+.|+..+||+++|+...
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 30 PGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CCSCSSCSSCSSCSTTCCCTT
T ss_pred CcceeECCCCCCccCcCCCcc
Confidence 356999999999999999753
No 251
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=55.17 E-value=56 Score=23.66 Aligned_cols=56 Identities=18% Similarity=0.405 Sum_probs=39.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHHHHHHHHHh
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDDAIREM 68 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~A~~Ai~~l 68 (280)
.+|.|.++.-......|++.+...-.|..+.|... ...+.|+|.. .++..++|+.+
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 45778888887777889999998888888877644 2368888874 34445555443
No 252
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=54.45 E-value=33 Score=28.19 Aligned_cols=56 Identities=7% Similarity=0.156 Sum_probs=36.2
Q ss_pred cEEEEcCCCCC---------CcHHHHHHHH--hhcCCeEEEEEeecCCCCCCccEEEEEeCCHH-HHHHHH
Q 023559 7 NRIFVGGLSWN---------VTERQLENAF--DRFGKIIECQIMLERDSGRPRGFGFITYADRR-AMDDAI 65 (280)
Q Consensus 7 ~~lfVgnLp~~---------vte~dL~~~F--~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e-~A~~Ai 65 (280)
-++.|-|+|.. ...++|.+.| +.|.+++ |+.+..+. -+.++|.|+|.+.- -...|+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHH
Confidence 45667888862 2347889967 8997766 44444432 36789999998543 334444
No 253
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=54.37 E-value=40 Score=21.65 Aligned_cols=57 Identities=16% Similarity=0.288 Sum_probs=40.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC--HHHHHHHHHHh
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD--RRAMDDAIREM 68 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~--~e~A~~Ai~~l 68 (280)
..+|.|.++.-..-...|++.+.+.-.|..+.+.... ..+.|+|.. .+...++|+.+
T Consensus 4 ~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~------~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 4 RYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFAT------EKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTT------TEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecC------CEEEEEECCCCHHHHHHHHHHc
Confidence 3467888988777778899999988888888775442 367888875 33344555443
No 254
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=53.76 E-value=37 Score=21.09 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=38.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHHHHHHHHH
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDDAIRE 67 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~A~~Ai~~ 67 (280)
.++.|.++.-......|++.+.+.-.|..+.+... ...+.|+|.. .+...++|+.
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 36788888887777889999998878888877543 2367888863 3344444433
No 255
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=53.39 E-value=40 Score=21.30 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=38.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHHHHHHHHHh
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDDAIREM 68 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~A~~Ai~~l 68 (280)
..+|.|.++.-......|++.+.+.-.|..+.+... .+.+.|+|.. .+...++|+.+
T Consensus 6 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 6 QLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 346778888766666778899998878888877543 2367788763 34445555443
No 256
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=53.37 E-value=27 Score=26.19 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=40.5
Q ss_pred CCCCCCcHHHHHHHH-hhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEec
Q 023559 13 GLSWNVTERQLENAF-DRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKA 83 (280)
Q Consensus 13 nLp~~vte~dL~~~F-~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a 83 (280)
.++.-+.-++|+... ..||....+..+.+ --.|-..+.++..+||+.|+-. ..-+.|+|-+.
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs-~~mkSLRIlL~ 108 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRS-SSMKSLRILLL 108 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHC-SSCCSEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccC-ccccceEEEEe
Confidence 456667777776544 46777777766533 2568889999999999887643 33334454443
No 257
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=53.26 E-value=70 Score=24.10 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=35.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHh-------hcCCeEEEEEeecCCC-CCCcc--EE-EEEeCCHHHHHH
Q 023559 8 RIFVGGLSWNVTERQLENAFD-------RFGKIIECQIMLERDS-GRPRG--FG-FITYADRRAMDD 63 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~-------~~G~I~~v~i~~d~~t-g~~rG--~a-FV~F~~~e~A~~ 63 (280)
-|.+-.|...++++++.++.+ +.-.|+.+.+-.+... ...++ ++ +++|++.++.+.
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~ 89 (121)
T 3bb5_A 23 HLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDA 89 (121)
T ss_dssp EEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHH
Confidence 445567899988876554443 4567888887776542 23333 33 468998887654
No 258
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=52.98 E-value=57 Score=23.59 Aligned_cols=54 Identities=9% Similarity=0.139 Sum_probs=33.8
Q ss_pred EEEcCCCCCCcHHHHHHHHh-------hcCCeEEEEEeecCCCCCCccE---EEEEeCCHHHHHH
Q 023559 9 IFVGGLSWNVTERQLENAFD-------RFGKIIECQIMLERDSGRPRGF---GFITYADRRAMDD 63 (280)
Q Consensus 9 lfVgnLp~~vte~dL~~~F~-------~~G~I~~v~i~~d~~tg~~rG~---aFV~F~~~e~A~~ 63 (280)
|.+-.|...+++++++++.+ +.-.|+.+.+-.+.. ...++| .+++|++.++.+.
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 34456888888766544432 466788888877654 333333 3568888877644
No 259
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=52.73 E-value=43 Score=21.51 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=38.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHHHHHHHHHh
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDDAIREM 68 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~A~~Ai~~l 68 (280)
.+|.|.++.-......|++.+.+.-.|..+.+.... ..+.|+|.. .+...++|+.+
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 4 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEE------KNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 357788887666667789999988888888775442 368888864 34455556543
No 260
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=51.62 E-value=68 Score=23.62 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=35.0
Q ss_pred EEEEcCCCCCCcHHHHHHHHh-------hcCCeEEEEEeecCCC-CCCcc---EEEEEeCCHHHHHH
Q 023559 8 RIFVGGLSWNVTERQLENAFD-------RFGKIIECQIMLERDS-GRPRG---FGFITYADRRAMDD 63 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~-------~~G~I~~v~i~~d~~t-g~~rG---~aFV~F~~~e~A~~ 63 (280)
.|.+-.|...++++++.++.+ +.-.|+.+.+-.+... ...++ ..+++|++.++.+.
T Consensus 13 HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (112)
T 1q4r_A 13 HVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAE 79 (112)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHH
Confidence 344557888888877655443 3556777877665443 22233 34568999887654
No 261
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=51.39 E-value=35 Score=21.58 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=37.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHHHHHHHHHh
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDDAIREM 68 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~A~~Ai~~l 68 (280)
.+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|.. .+...++|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA------NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 45778787666566778898988877777776543 2367888864 34455556544
No 262
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=51.23 E-value=5.6 Score=26.71 Aligned_cols=21 Identities=33% Similarity=0.738 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 023559 118 DDCFKCGRPGHWARDCPSAVG 138 (280)
Q Consensus 118 ~~~~~~g~~g~~~~~~~~~~G 138 (280)
..|+.|+..+|++++|+....
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~~ 51 (61)
T 2ihx_A 31 ERCQLCNGMGHNAKQCRKRDG 51 (61)
T ss_dssp SBCTTTCCBSSCGGGCCCCC-
T ss_pred CeeCCCCCCCCCcCCCcCCCc
Confidence 569999999999999997643
No 263
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=51.23 E-value=44 Score=21.11 Aligned_cols=56 Identities=13% Similarity=0.267 Sum_probs=39.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHHHHHHHHHh
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDDAIREM 68 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~A~~Ai~~l 68 (280)
.+|.|.++.-......|++.+.+.-.|..+.+... ...+.|+|.. .+...++|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE------TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 46778888877777889999998888888877543 2367888863 34445555443
No 264
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=49.65 E-value=36 Score=22.20 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=38.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHHHHHHHHHh
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDDAIREM 68 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~A~~Ai~~l 68 (280)
.+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|.. .+...++|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILVALM------AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTT------TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46778888777777889999998877877665433 2367788863 34455556544
No 265
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=49.45 E-value=48 Score=24.86 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=33.1
Q ss_pred EEEcCCCCCCcHHHHHHHHhh-------cCCeEEEEEeecCCCCCCcc--EE-EEEeCCHHHHHH
Q 023559 9 IFVGGLSWNVTERQLENAFDR-------FGKIIECQIMLERDSGRPRG--FG-FITYADRRAMDD 63 (280)
Q Consensus 9 lfVgnLp~~vte~dL~~~F~~-------~G~I~~v~i~~d~~tg~~rG--~a-FV~F~~~e~A~~ 63 (280)
|.+-.|...++++++.++.+. .-.|+.+.+-.+.. ...++ ++ +++|++.++.++
T Consensus 25 IVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 25 IALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHH
Confidence 445578888888776555442 44677777766643 23233 33 468888777644
No 266
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=48.11 E-value=9.7 Score=23.00 Aligned_cols=17 Identities=35% Similarity=1.111 Sum_probs=15.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q 023559 118 DDCFKCGRPGHWARDCP 134 (280)
Q Consensus 118 ~~~~~~g~~g~~~~~~~ 134 (280)
..|+.|+..+|++++||
T Consensus 22 ~~C~~Cg~~GH~~~~C~ 38 (39)
T 2a51_A 22 EGCWNCGSKEHRFAQCP 38 (39)
T ss_dssp SSCTTTCCSSSCTTTSC
T ss_pred CccccCCCCCCccCcCc
Confidence 46999999999999987
No 267
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=47.67 E-value=35 Score=25.60 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=27.0
Q ss_pred CeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCce
Q 023559 32 KIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGRE 72 (280)
Q Consensus 32 ~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~ 72 (280)
.|.+|.... ..+||.|||=.++.++..||+.+....
T Consensus 40 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPE-----HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECT-----TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecC-----CCceEEEEEeCCHHHHHHHHhccccee
Confidence 355555432 368999999999999999998776543
No 268
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=47.64 E-value=67 Score=23.98 Aligned_cols=55 Identities=7% Similarity=0.257 Sum_probs=35.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeC----CHHHHHHHHHHh
Q 023559 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYA----DRRAMDDAIREM 68 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~----~~e~A~~Ai~~l 68 (280)
+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+|. +.++..++|+.+
T Consensus 77 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 77 EFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEEESSCCSSSHHHHHHHHHTTSSSEEECCEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCceEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 4667777766666777777777767766665433 236778886 345555666554
No 269
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=46.17 E-value=7.7 Score=34.09 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=28.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecC
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLER 42 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~ 42 (280)
..+.|+|||+.++..-|.+++.....+..+.|+..+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Qk 150 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQN 150 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEEH
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEeeH
Confidence 457899999999999999999866567776665543
No 270
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=46.04 E-value=95 Score=23.60 Aligned_cols=52 Identities=12% Similarity=0.034 Sum_probs=39.3
Q ss_pred CCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023559 14 LSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHG 70 (280)
Q Consensus 14 Lp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng 70 (280)
++... .+++.+.+..+-+|.+|..+.. ...-++.|.+.+.++.++.+..+..
T Consensus 73 ~~~~~-~~~~~~~l~~~p~V~~~~~~tG----~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 73 VKNAD-YERFKSYIQTLPNIEFCYRIAG----AACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp EGGGC-HHHHHHHHHTCTTEEEEEEEES----SSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred ECccc-HHHHHHHHhcChhhheeeeeeC----CCCEEEEEEECCHHHHHHHHHHhcC
Confidence 44432 4667788888999999987753 3345788999999999999988765
No 271
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=45.66 E-value=60 Score=24.56 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=33.1
Q ss_pred EEEcCCCCCCcHHHHHHHH-------hhcCCeEEEEEeecCCCCCCccEE-EEEeCCHHHHHH
Q 023559 9 IFVGGLSWNVTERQLENAF-------DRFGKIIECQIMLERDSGRPRGFG-FITYADRRAMDD 63 (280)
Q Consensus 9 lfVgnLp~~vte~dL~~~F-------~~~G~I~~v~i~~d~~tg~~rG~a-FV~F~~~e~A~~ 63 (280)
|.+-.|...+++++++++. .+.-.|+.+.+-.+......--++ +++|++.++.+.
T Consensus 24 IVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 24 TVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 4445688887766654443 346678888887765431112244 468888877644
No 272
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=45.55 E-value=55 Score=20.60 Aligned_cols=56 Identities=14% Similarity=0.301 Sum_probs=36.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeC---CHHHHHHHHHHh
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYA---DRRAMDDAIREM 68 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~---~~e~A~~Ai~~l 68 (280)
.+|.|.++.-......|++.+.+.-.|..+.+... ...+.|+|. +.+...++|+.+
T Consensus 4 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 4 VILAVHGMTCSACTNTINTQLRALKGVTKCDISLV------TNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTT------TTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHHC
Confidence 35678888766666778888988877877766433 236778886 234445555443
No 273
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=45.34 E-value=8.4 Score=27.78 Aligned_cols=20 Identities=35% Similarity=0.951 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 023559 118 DDCFKCGRPGHWARDCPSAV 137 (280)
Q Consensus 118 ~~~~~~g~~g~~~~~~~~~~ 137 (280)
--|++|+..||++++|+...
T Consensus 47 ~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 47 IYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp CBCSSSSCBSSCGGGCSSCC
T ss_pred CeecccCCCCcCcccCCccc
Confidence 35999999999999999764
No 274
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=45.07 E-value=10 Score=22.65 Aligned_cols=17 Identities=41% Similarity=1.394 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCCCCCC
Q 023559 119 DCFKCGRPGHWARDCPS 135 (280)
Q Consensus 119 ~~~~~g~~g~~~~~~~~ 135 (280)
.|++|+..+|++.+|+.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 48899999999999985
No 275
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=44.80 E-value=31 Score=21.94 Aligned_cols=52 Identities=10% Similarity=0.208 Sum_probs=34.5
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHH
Q 023559 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~ 66 (280)
+|.|.++.-..-...|++.+.+. .|..+.+... ...+.|++...++..++|+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~ 55 (67)
T 2kyz_A 4 VLYVPDISCNHCKMRISKALEEL-GVKNYEVSVE------EKKVVVETENLDSVLKKLE 55 (67)
T ss_dssp EEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETT------TTEEEEECSCHHHHHHHHH
T ss_pred EEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECC------CCEEEEEECCHHHHHHHHH
Confidence 56677776655567788888888 8887776543 2367888876533344443
No 276
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=44.29 E-value=11 Score=24.07 Aligned_cols=19 Identities=42% Similarity=1.076 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 023559 118 DDCFKCGRPGHWARDCPSA 136 (280)
Q Consensus 118 ~~~~~~g~~g~~~~~~~~~ 136 (280)
..|++|+..+|++.+|+..
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCS
T ss_pred CeeeecCCCCcChhhCcCC
Confidence 4699999999999999864
No 277
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=43.51 E-value=60 Score=24.11 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=35.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHHHHHHHHHh
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDDAIREM 68 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~A~~Ai~~l 68 (280)
.+|.|.++.-..-...|+..+.+.-.|..+.+.... ..+.|+|.. .++..++|+.+
T Consensus 82 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 82 IELTITGMTCASCVHNIESKLTRTNGITYASVALAT------SKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTT------TEEEEECCTTTSCHHHHHHHHHHH
T ss_pred eEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCC------CEEEEEECCCCCCHHHHHHHHHhC
Confidence 356677776665666778888777777777665432 367777763 34555556544
No 278
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=42.78 E-value=54 Score=24.37 Aligned_cols=76 Identities=22% Similarity=0.228 Sum_probs=41.8
Q ss_pred CcEEEEcCCCCCCcHHH--HHHHHh----h-c---C-----CeEEEEEeecCCCCC--CccEEEEEeCCHHH---HHHHH
Q 023559 6 ENRIFVGGLSWNVTERQ--LENAFD----R-F---G-----KIIECQIMLERDSGR--PRGFGFITYADRRA---MDDAI 65 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~d--L~~~F~----~-~---G-----~I~~v~i~~d~~tg~--~rG~aFV~F~~~e~---A~~Ai 65 (280)
-+.|-|-+||+...+.. ++.+|. . | . .|.++.-...+.+-+ +.-...|.|....+ ..+|.
T Consensus 3 r~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaa 82 (100)
T 2w7a_A 3 MGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 82 (100)
T ss_dssp TTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHH
T ss_pred ccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 35788889998733222 333332 2 2 1 355554433332211 22367777776554 44454
Q ss_pred HHhcCceeCCeEEEEE
Q 023559 66 REMHGREFGDRVISVN 81 (280)
Q Consensus 66 ~~lng~~l~gr~I~V~ 81 (280)
.+.+..+..+.+|.+.
T Consensus 83 r~k~~vtykg~pirls 98 (100)
T 2w7a_A 83 REKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHCCEEETTEEEEEE
T ss_pred HHhCceeeCCcceeec
Confidence 4555677899999875
No 279
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=42.66 E-value=19 Score=35.61 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=40.7
Q ss_pred CCCCCCcHHHHHHHHh----hcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023559 13 GLSWNVTERQLENAFD----RFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHG 70 (280)
Q Consensus 13 nLp~~vte~dL~~~F~----~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng 70 (280)
.++.+.+--+|..+|- .+|.|+++.|...+.. +..-+++|.|.+.++|.+|+..+..
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P-~~~~~~~~~f~d~~~a~~av~~i~~ 410 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTP-EYQKYGSVAFPNFEQGVACLREIAK 410 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECC-SEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCC-ccccccccccCCchhhhhhHHHHHH
Confidence 3455555568888884 6788999877654432 2345788999999999998877643
No 280
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=41.62 E-value=37 Score=23.48 Aligned_cols=57 Identities=7% Similarity=-0.017 Sum_probs=36.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeC-CHHHHHHHHHHh
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYA-DRRAMDDAIREM 68 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~-~~e~A~~Ai~~l 68 (280)
..+|.|.++.-..-...|++.+.+.-.|..+.|.... ..+.|++. +.++..++|+.+
T Consensus 23 ~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~------~~~~V~~~~~~~~i~~~i~~~ 80 (85)
T 2k2p_A 23 GLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPAS------RTVVVGGVSDAAHIAEIITAA 80 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTT------TEEEEESCCCHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCC------CEEEEEecCCHHHHHHHHHHc
Confidence 3456677776665567788888888777777765442 25667764 344455566543
No 281
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=41.18 E-value=16 Score=31.88 Aligned_cols=35 Identities=9% Similarity=0.374 Sum_probs=27.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeec
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLE 41 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d 41 (280)
...+.|+|||+.++..-|.+++.. ..+..+.|+..
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 356789999999999999999987 66666655543
No 282
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.06 E-value=52 Score=23.43 Aligned_cols=53 Identities=6% Similarity=0.169 Sum_probs=34.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeC-CHHHHHHHHHH
Q 023559 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYA-DRRAMDDAIRE 67 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~-~~e~A~~Ai~~ 67 (280)
+|.|. +.-..-...|++.+.+.-.|..+.|.... ..+.|++. +.++..++|+.
T Consensus 22 ~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~------~~~~V~~~~~~~~i~~~i~~ 75 (98)
T 2crl_A 22 EFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLED------QMVLVHTTLPSQEVQALLEG 75 (98)
T ss_dssp EEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTT------TEEEEEESSCHHHHHHHHHT
T ss_pred EEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCC------CEEEEEEeCCHHHHHHHHHH
Confidence 45666 65555567789999988888888876542 36777775 34555555544
No 283
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=40.63 E-value=1.2e+02 Score=23.29 Aligned_cols=72 Identities=21% Similarity=0.290 Sum_probs=42.2
Q ss_pred cEEEEcCCCCCCcHHHH---HHHHhhcCCeEEEEEeecCCCCCCccEEEEEe--CCHHHHHHHHHHhcCc----------
Q 023559 7 NRIFVGGLSWNVTERQL---ENAFDRFGKIIECQIMLERDSGRPRGFGFITY--ADRRAMDDAIREMHGR---------- 71 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL---~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F--~~~e~A~~Ai~~lng~---------- 71 (280)
-.|.|.++|..+..+-. +.+-..|-.-+.-.|+ . ...|.--|.| ++.+..++||++|-.+
T Consensus 43 l~i~itgvpeqvrkelakeaerl~~efni~v~y~im-g----sgsgvm~i~f~gddlea~ekalkemirqarkfagtvty 117 (170)
T 4hhu_A 43 LVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIM-G----SGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTY 117 (170)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEE-C----TTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEE-e----CCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEE
Confidence 35678899988765432 2333455332333444 2 2245667777 4788889998776322
Q ss_pred eeCCeEEEEEec
Q 023559 72 EFGDRVISVNKA 83 (280)
Q Consensus 72 ~l~gr~I~V~~a 83 (280)
.|.+..|.|.+.
T Consensus 118 tl~gn~l~i~it 129 (170)
T 4hhu_A 118 TLSGNRLVIVIT 129 (170)
T ss_dssp EECSSEEEEEEE
T ss_pred EEeCCEEEEEEe
Confidence 466777766554
No 284
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=40.52 E-value=61 Score=19.74 Aligned_cols=55 Identities=18% Similarity=0.324 Sum_probs=36.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHHHHHHHHH
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDDAIRE 67 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~A~~Ai~~ 67 (280)
.+|.|.++.-......|+..+...-.|..+.+... ...+.|+|.. .+...++|+.
T Consensus 4 ~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 62 (69)
T 2qif_A 4 KTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLE------AGKVDVSFDADKVSVKDIADAIED 62 (69)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 36778888766566778898988878888776543 2367788863 3444555544
No 285
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=38.99 E-value=80 Score=23.53 Aligned_cols=56 Identities=11% Similarity=0.265 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhc--------CCeEEEEEeecC-----CCCCCcc-EEEEEeCC-HHHHHHHH
Q 023559 8 RIFVGGLSWNVTERQLENAFDRF--------GKIIECQIMLER-----DSGRPRG-FGFITYAD-RRAMDDAI 65 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~~~--------G~I~~v~i~~d~-----~tg~~rG-~aFV~F~~-~e~A~~Ai 65 (280)
++|| |.++++++++.++..+| |.|.++..+=.+ -....+| |.++.|+. ..++.+-|
T Consensus 12 ~~~I--l~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~~G~Y~l~~f~a~~~~~i~el 82 (110)
T 2j5a_A 12 TVFA--VKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFNNARYFLVQFKTENPQLPNEL 82 (110)
T ss_dssp EEEE--ECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCSEEEEEEEEEEESCTTHHHHH
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeCCHHHHHHH
Confidence 4555 56777777766555433 356655421111 1122333 67788876 44444333
No 286
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.97 E-value=28 Score=23.37 Aligned_cols=18 Identities=39% Similarity=1.082 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 023559 118 DDCFKCGRPGHWARDCPS 135 (280)
Q Consensus 118 ~~~~~~g~~g~~~~~~~~ 135 (280)
..||+|+..+|++.+|+.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 346777777777777764
No 287
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=38.32 E-value=98 Score=23.24 Aligned_cols=55 Identities=4% Similarity=-0.036 Sum_probs=33.2
Q ss_pred EEEcCCCCCCcHHHHHHHHh------hcCCeEEEEEeecCCC----CCCcc--EE-EEEeCCHHHHHH
Q 023559 9 IFVGGLSWNVTERQLENAFD------RFGKIIECQIMLERDS----GRPRG--FG-FITYADRRAMDD 63 (280)
Q Consensus 9 lfVgnLp~~vte~dL~~~F~------~~G~I~~v~i~~d~~t----g~~rG--~a-FV~F~~~e~A~~ 63 (280)
|.+-.|...+++++++++.+ +.-.|+.+.+-.+..+ ...++ ++ +++|++.++.+.
T Consensus 24 IVlfklK~~~~~~~~~~~~~~l~~L~~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~~ 91 (120)
T 3bn7_A 24 QVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQKR 91 (120)
T ss_dssp EEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhccCCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHHH
Confidence 44556888888877554433 3456777777665543 22333 34 468888877543
No 288
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=37.78 E-value=46 Score=24.21 Aligned_cols=61 Identities=11% Similarity=0.016 Sum_probs=37.1
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeEE---EEEeecCCCCCCccEEEEEeCC--HHHHHHHHHHhcC
Q 023559 8 RIFVGGLSWNVTERQLENAFDRFGKIIE---CQIMLERDSGRPRGFGFITYAD--RRAMDDAIREMHG 70 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~~~G~I~~---v~i~~d~~tg~~rG~aFV~F~~--~e~A~~Ai~~lng 70 (280)
.|-|.-....+.+..|.++..+|+.-.+ -.|-. -.+.+-|.-+|++.- .++.++|++.|..
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~--i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKN--TKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEE--ETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEE--eCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 3444433445667777888888864333 23322 223456788888874 6777888888754
No 289
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=36.91 E-value=17 Score=25.52 Aligned_cols=20 Identities=35% Similarity=0.963 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 023559 117 QDDCFKCGRPGHWARDCPSA 136 (280)
Q Consensus 117 ~~~~~~~g~~g~~~~~~~~~ 136 (280)
...||+|+..+|++.+|+..
T Consensus 24 ~~~C~~Cg~~GH~a~~C~~~ 43 (74)
T 2li8_A 24 GDRCYNCGGLDHHAKECKLP 43 (74)
T ss_dssp TSCCTTTCCSSSCTTTCSSC
T ss_pred CCcccccCCcCcCcccCCCC
Confidence 35699999999999999853
No 290
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=36.37 E-value=96 Score=23.26 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=32.3
Q ss_pred EEEEcCCCCCCcHHHH-------HHHHh----hcCCeEEEEEeecCCCCCCccEE-EEEeCCHHHHHH
Q 023559 8 RIFVGGLSWNVTERQL-------ENAFD----RFGKIIECQIMLERDSGRPRGFG-FITYADRRAMDD 63 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL-------~~~F~----~~G~I~~v~i~~d~~tg~~rG~a-FV~F~~~e~A~~ 63 (280)
-|.+-.|...++++++ ++.|. +.-.|+.+.+-.+......--++ .++|++.++.++
T Consensus 23 HIVlfklK~~~~~~~~~~~~~~~~~~l~~L~~~IP~i~~~~vG~~~s~~~~yd~~l~~~F~s~e~l~~ 90 (118)
T 3fmb_A 23 HIVLFKLRDDVPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLNMNPGETWNIALYSEFDNLDDVKF 90 (118)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHHHTGGGTCTTCSEEEEEECCCTTCCCCEEEEEEESSHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEEeccCCCCCCceEEEEEEECCHHHHHH
Confidence 3445568888876643 23343 34567788777664322222233 468888887654
No 291
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=36.13 E-value=76 Score=19.53 Aligned_cols=55 Identities=20% Similarity=0.397 Sum_probs=37.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHHHHHHHHH
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDDAIRE 67 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~A~~Ai~~ 67 (280)
.++.|.++.-......|+..+.+.-.|..+.+... ...+.|+|.. .+...++|+.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 63 (71)
T 2ldi_A 5 QQMQVGGMRCAACASSIERALERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAA 63 (71)
T ss_dssp EEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETT------TTEEEEEECTTTCCTHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 46778888777667778998988877887776543 2367788864 2344455543
No 292
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=35.83 E-value=39 Score=24.51 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.0
Q ss_pred CeEEEEEeecCCCCCCccEEEEEeCC
Q 023559 32 KIIECQIMLERDSGRPRGFGFITYAD 57 (280)
Q Consensus 32 ~I~~v~i~~d~~tg~~rG~aFV~F~~ 57 (280)
+|++|+|..-...++.++||-|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68888887776678899999999986
No 293
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=35.56 E-value=35 Score=24.54 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=28.4
Q ss_pred CcHHHHHHHHhhcCCe-EEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEE
Q 023559 18 VTERQLENAFDRFGKI-IECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISV 80 (280)
Q Consensus 18 vte~dL~~~F~~~G~I-~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V 80 (280)
-||++|+.+++.|-.- ..|+ .+|...+.++..+|.+..+..+|+-++-+|
T Consensus 33 ktedelkkyleefrkesqnik-------------vlilvsndeeldkakelaqkmeidvrtrkv 83 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIK-------------VLILVSNDEELDKAKELAQKMEIDVRTRKV 83 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEE-------------EEEEESSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccHHHHHHHHHHHHhhccCeE-------------EEEEEcChHHHHHHHHHHHhhceeeeeeec
Confidence 4788898888776321 1111 223345667777777666655555444443
No 294
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=35.18 E-value=26 Score=30.05 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=25.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEee
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIML 40 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~ 40 (280)
..+.|+|||+.++...|.+++...-.+..+.++.
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m~ 124 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHFML 124 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEEEE
Confidence 3578999999999999988887554565555543
No 295
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=34.82 E-value=87 Score=20.09 Aligned_cols=56 Identities=7% Similarity=0.244 Sum_probs=36.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHHHHHHHHHh
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDDAIREM 68 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~A~~Ai~~l 68 (280)
.+|.|.++.-......|+..+.+.-.|..+.+... ...+.|+|.. .+...++|+.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (80)
T 1jww_A 5 AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDKL 64 (80)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSS------SSEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46778888766566778898988877776655332 3467788863 34445555443
No 296
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=34.65 E-value=91 Score=20.00 Aligned_cols=54 Identities=9% Similarity=0.193 Sum_probs=36.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeC-CHHHHHHHHHH
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYA-DRRAMDDAIRE 67 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~-~~e~A~~Ai~~ 67 (280)
..+|.| ++.-..-...|++.+.+.-.| .+.+..... -+.|++. +.++..++|+.
T Consensus 3 ~~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~------~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 3 KHEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLPNK------KVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp EEEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETTTT------EEEEEESSCHHHHHHHHHT
T ss_pred eEEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcCCC------EEEEEecCCHHHHHHHHHH
Confidence 346778 887776678899999888778 777755432 4667664 45555566644
No 297
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=33.72 E-value=92 Score=23.11 Aligned_cols=48 Identities=15% Similarity=0.316 Sum_probs=29.5
Q ss_pred CCCcHHHHHHHHhhc-C---CeEEE-EEeecCCCCCCccEEEEEeCCHHHHHHH
Q 023559 16 WNVTERQLENAFDRF-G---KIIEC-QIMLERDSGRPRGFGFITYADRRAMDDA 64 (280)
Q Consensus 16 ~~vte~dL~~~F~~~-G---~I~~v-~i~~d~~tg~~rG~aFV~F~~~e~A~~A 64 (280)
.+++..+|++.+.+. . .++.| .|.+.-..+++.|||.| |++.+.|++.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 557778887777643 2 22222 34444445677888876 7777777654
No 298
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=33.37 E-value=17 Score=31.42 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=27.4
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecC
Q 023559 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLER 42 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~ 42 (280)
-..|+|||+.++...|.+++.....+..+.|+..+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Qk 132 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQK 132 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEEH
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEEEeH
Confidence 34799999999999999999876667766665543
No 299
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=33.36 E-value=77 Score=21.49 Aligned_cols=64 Identities=9% Similarity=0.111 Sum_probs=37.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCcee
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREF 73 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l 73 (280)
....|-|+-+.....-+.|.+.+...|.-..| ... +..--.-+--|.+.++|++++..|...-+
T Consensus 8 ~~~~vQvGaf~~~~~A~~~~~~L~~~g~~~~i--~~~---~~~yRV~vGpf~~~~~A~~~~~~L~~~g~ 71 (79)
T 1x60_A 8 GLYKVQIGAFKVKANADSLASNAEAKGFDSIV--LLK---DGLYKVQIGAFSSKDNADTLAARAKNAGF 71 (79)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHHHHTCCEEE--EEE---TTEEEEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCEEEEEEEcCCHHHHHHHHHHHHhCCCCeEE--ecC---CcEEEEEECCcCCHHHHHHHHHHHHHcCC
Confidence 34566677666655556666666655532222 221 11111334478999999999988876444
No 300
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=33.27 E-value=13 Score=24.18 Aligned_cols=19 Identities=42% Similarity=1.174 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 023559 118 DDCFKCGRPGHWARDCPSA 136 (280)
Q Consensus 118 ~~~~~~g~~g~~~~~~~~~ 136 (280)
..|+.|+..+|++++|+..
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSS
T ss_pred CEeCCCCCcCCccCCCcCc
Confidence 4599999999999999853
No 301
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}
Probab=33.17 E-value=1.1e+02 Score=23.83 Aligned_cols=72 Identities=13% Similarity=0.208 Sum_probs=36.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCH--------HHHHHHHHHhcCceeCCeEEE
Q 023559 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADR--------RAMDDAIREMHGREFGDRVIS 79 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~--------e~A~~Ai~~lng~~l~gr~I~ 79 (280)
.|||++++...+.+.|+ +. .|+.|.-+.........++.++.+.-. +...++++.++.....+.+|.
T Consensus 13 ~lylG~~~~~~d~~~L~----~~-gI~~Vi~l~~~~~~~~~~i~~~~ip~~D~~~~~l~~~~~~~~~fi~~~~~~~~~Vl 87 (165)
T 1wrm_A 13 GLYIGNFKDARDAEQLS----KN-KVTHILSVHDSARPMLEGVKYLCIPAADSPSQNLTRHFKESIKFIHECRLRGESCL 87 (165)
T ss_dssp TEEEECTTGGGCHHHHH----HT-TEEEEEECSTTCCCCSTTCEEEECCCCSSTTSCCGGGHHHHHHHHHHHHHTTCEEE
T ss_pred CEEECChhHhcCHHHHH----HC-CCcEEEEecCCCCCCCCCCeEEEEECCCCCCccHHHHHHHHHHHHHHHHHCCCeEE
Confidence 48999988665555444 33 566554443332223345666655311 223444444443333556666
Q ss_pred EEecC
Q 023559 80 VNKAQ 84 (280)
Q Consensus 80 V~~a~ 84 (280)
|....
T Consensus 88 VHC~a 92 (165)
T 1wrm_A 88 VHCLA 92 (165)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 76543
No 302
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=32.49 E-value=1.7e+02 Score=23.21 Aligned_cols=56 Identities=16% Similarity=0.327 Sum_probs=40.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHHHHHHHHHh
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDDAIREM 68 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~A~~Ai~~l 68 (280)
.+|.|.++.-..-...|+..+.+.-.|..+.|.... ..+.|+|.. .++..++|+.+
T Consensus 124 ~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 124 TLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAE------GTATVLYNPAVISPEELRAAIEDM 183 (202)
T ss_dssp EEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTT------TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccC------CEEEEEECCCCCCHHHHHHHHHHc
Confidence 457788887777778899999998888888876542 368888863 44555666554
No 303
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=32.09 E-value=1.5e+02 Score=21.78 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=43.9
Q ss_pred cCCCCCCcHHHHHHH----------HhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEE
Q 023559 12 GGLSWNVTERQLENA----------FDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVN 81 (280)
Q Consensus 12 gnLp~~vte~dL~~~----------F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~ 81 (280)
-+||.+++.+++.++ +.+-|++..++-+. |...-+++..-++.++..+.|..|.-..+. .|+|.
T Consensus 9 V~~P~~~~~~~~~~~~a~Eka~a~eLq~~G~~~~lWRv~----G~y~nisIfdv~s~~eLh~iL~~LPLfpym--~i~Vt 82 (96)
T 1mli_A 9 VKLPVDMDPAKATQLKADEKELAQRLQREGTWRHLWRIA----GHYANYSVFDVPSVEALHDTLMQLPLFPYM--DIEVD 82 (96)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeEEEEEec----CCccEEEEEEcCCHHHHHHHHHhCCCCceE--EEEEE
Confidence 378998888775444 33558888886553 455568888889999998888777655443 45554
No 304
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=31.83 E-value=1e+02 Score=26.42 Aligned_cols=77 Identities=18% Similarity=0.152 Sum_probs=41.3
Q ss_pred CcEEEEcCCCCCCc--HHHHHHHHh-----hcCC--------eEEEEEeecCCCC--CCccEEEEEeCCHHHH---HHHH
Q 023559 6 ENRIFVGGLSWNVT--ERQLENAFD-----RFGK--------IIECQIMLERDSG--RPRGFGFITYADRRAM---DDAI 65 (280)
Q Consensus 6 ~~~lfVgnLp~~vt--e~dL~~~F~-----~~G~--------I~~v~i~~d~~tg--~~rG~aFV~F~~~e~A---~~Ai 65 (280)
-+.|-|-+||.... +..++.+|. .|-. |.++.-...+.+. .+.-...|.|....+- .+|.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaa 131 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 131 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 46788999999876 444444444 2332 3333222111110 1122567777765544 4444
Q ss_pred HHhcCceeCCeEEEEEe
Q 023559 66 REMHGREFGDRVISVNK 82 (280)
Q Consensus 66 ~~lng~~l~gr~I~V~~ 82 (280)
.+.+..+..+.+|.+..
T Consensus 132 R~k~~vtykG~pIrlsa 148 (233)
T 2yko_A 132 REKGRVTLKGKPIRLTV 148 (233)
T ss_dssp HTTSCEEETTEEEEEEE
T ss_pred HHhcccccCCCceEEeC
Confidence 45556778999987754
No 305
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.39 E-value=97 Score=22.27 Aligned_cols=56 Identities=7% Similarity=0.178 Sum_probs=36.6
Q ss_pred EEEcCCCCCCcHHHHHHHHhhc-C-CeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 023559 9 IFVGGLSWNVTERQLENAFDRF-G-KIIECQIMLERDSGRPRGFGFITYADRRAMDDAIRE 67 (280)
Q Consensus 9 lfVgnLp~~vte~dL~~~F~~~-G-~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~ 67 (280)
.|+.-+....+..+|++.++++ + .|.+|..+.-+. +. -=|+|++....+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~~--KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-GE--KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-SC--EEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-Cc--eEEEEEcCCCCcHHHHHHh
Confidence 3444567888999998888764 3 566665554432 21 2599999988777765444
No 306
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=31.01 E-value=23 Score=32.31 Aligned_cols=22 Identities=9% Similarity=-0.008 Sum_probs=19.1
Q ss_pred EEEEcCCCCCCcHHHHHHHHhh
Q 023559 8 RIFVGGLSWNVTERQLENAFDR 29 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~~ 29 (280)
.++|+|||++++..-|.+++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988888874
No 307
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=30.84 E-value=82 Score=24.18 Aligned_cols=36 Identities=0% Similarity=-0.106 Sum_probs=19.7
Q ss_pred cCCeEEEEEeecCCCCCCccEEEEE-eCCHHHHHHHHHHhc
Q 023559 30 FGKIIECQIMLERDSGRPRGFGFIT-YADRRAMDDAIREMH 69 (280)
Q Consensus 30 ~G~I~~v~i~~d~~tg~~rG~aFV~-F~~~e~A~~Ai~~ln 69 (280)
+=.|+.|.|-.|.. .-.+||+ |-+.++.+.+++.|+
T Consensus 43 ~vtVt~V~vS~Dl~----~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFS----ACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSC----CEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCc----EEEEEEEecCChhhHHHHHHHHH
Confidence 34788888876643 2245555 444544444444443
No 308
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=29.93 E-value=1.3e+02 Score=20.49 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=39.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC----HHHHHHHHHHh
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD----RRAMDDAIREM 68 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~----~e~A~~Ai~~l 68 (280)
.+|.|.++.-......|+..+...-.|..+.+... ...+.|+|.. .+....+|+.+
T Consensus 18 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 77 (95)
T 2kkh_A 18 SYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVP------SRTVIVVHDSLLISPFQIAKALNEA 77 (95)
T ss_dssp EEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 46778888877777889999998878888777543 2367888864 34445555443
No 309
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=29.93 E-value=1e+02 Score=23.10 Aligned_cols=48 Identities=13% Similarity=0.073 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHHhh-cCC---eEEE-EEeecCCCCCCccEEEEEeCCHHHHHHH
Q 023559 16 WNVTERQLENAFDR-FGK---IIEC-QIMLERDSGRPRGFGFITYADRRAMDDA 64 (280)
Q Consensus 16 ~~vte~dL~~~F~~-~G~---I~~v-~i~~d~~tg~~rG~aFV~F~~~e~A~~A 64 (280)
.+++..+|++.+.+ |.. ++.| .|.+.-..+++.|||.| |++++.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35677777766653 322 2222 34344444677888876 7888877754
No 310
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=29.90 E-value=1.3e+02 Score=20.25 Aligned_cols=50 Identities=10% Similarity=0.122 Sum_probs=29.5
Q ss_pred cHHHHHHHHhhcC-CeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023559 19 TERQLENAFDRFG-KIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHG 70 (280)
Q Consensus 19 te~dL~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng 70 (280)
.-.+|.++|++.+ .|..+.+.... ....-...|+..+.+..+++++.|..
T Consensus 18 ~L~~I~~~la~~~inI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~ 68 (88)
T 2ko1_A 18 MTNQITGVISKFDTNIRTIVLNAKD--GIFTCNLMIFVKNTDKLTTLMDKLRK 68 (88)
T ss_dssp HHHHHHHHHTTSSSCEEEEEEEECS--SEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCeEEEEEEEcC--CEEEEEEEEEECCHHHHHHHHHHHhc
Confidence 4577888888775 67777765432 11111112345567777777777754
No 311
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=29.53 E-value=55 Score=24.34 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=21.8
Q ss_pred CeEEEEEeecCCCCCCccEEEEEeCC
Q 023559 32 KIIECQIMLERDSGRPRGFGFITYAD 57 (280)
Q Consensus 32 ~I~~v~i~~d~~tg~~rG~aFV~F~~ 57 (280)
+|++|+|..-...++.++||-|+|++
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68888887766668899999999975
No 312
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=29.42 E-value=96 Score=22.63 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhc--------CCeEEEEE------eecCCCCCCc-cEEEEEeCCHHHHHHHH
Q 023559 8 RIFVGGLSWNVTERQLENAFDRF--------GKIIECQI------MLERDSGRPR-GFGFITYADRRAMDDAI 65 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~~~--------G~I~~v~i------~~d~~tg~~r-G~aFV~F~~~e~A~~Ai 65 (280)
++|| |.++++++++.++..++ |.|.++.. ...- ....+ -|.++.|+...++.+-|
T Consensus 6 ~~~I--l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I-~k~~~G~Y~l~~f~a~~~~i~el 75 (101)
T 1cqm_A 6 VNIV--LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPI-AKDPQGYFLWYQVEMPEDRVNDL 75 (101)
T ss_dssp EEEE--ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEECHHHHHHH
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCc-CCCCEEEEEEEEEEeChHHHHHH
Confidence 4555 46677777766555444 45665432 1111 11223 36778887665554444
No 313
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=29.29 E-value=23 Score=30.28 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=25.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEee
Q 023559 7 NRIFVGGLSWNVTERQLENAFDRFGKIIECQIML 40 (280)
Q Consensus 7 ~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~ 40 (280)
..+.|+|||+.++...|.+++.....+..+.++.
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~ 129 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMV 129 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence 3478999999999999999988654455554443
No 314
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=29.04 E-value=18 Score=28.77 Aligned_cols=20 Identities=25% Similarity=0.644 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 023559 117 QDDCFKCGRPGHWARDCPSA 136 (280)
Q Consensus 117 ~~~~~~~g~~g~~~~~~~~~ 136 (280)
...|+.|+..+|++++||..
T Consensus 119 ~~~C~~Cg~~GH~~r~Cp~~ 138 (148)
T 3ts2_A 119 PKKCHFCQSINHMVASCPLK 138 (148)
T ss_dssp CCCCTTTCCSSCCGGGCTTT
T ss_pred CCcccccCCcCCEeccCcCC
Confidence 35699999999999999865
No 315
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=28.88 E-value=39 Score=32.10 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=29.5
Q ss_pred HHHHHHh--hcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHH
Q 023559 22 QLENAFD--RFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIR 66 (280)
Q Consensus 22 dL~~~F~--~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~ 66 (280)
+|..+|. .+|.|+++.|...+.. +....+++.|.+.++|.+|++
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p-~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKP-PVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECC-SEEEEEEEEECCGGGHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecC-CeEEEEEEEeCCHHHHHHHHH
Confidence 4566673 6889999887665432 233467899999888766443
No 316
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=28.44 E-value=60 Score=24.38 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=21.4
Q ss_pred CeEEEEEeecCCCCCCccEEEEEeCC
Q 023559 32 KIIECQIMLERDSGRPRGFGFITYAD 57 (280)
Q Consensus 32 ~I~~v~i~~d~~tg~~rG~aFV~F~~ 57 (280)
+|++|+|..-...++.++||-|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 67888887766668889999999975
No 317
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.22 E-value=66 Score=24.40 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhhcCCeE
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDRFGKII 34 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~~G~I~ 34 (280)
...+|+|.++. ..+.++|+++...+|...
T Consensus 24 ~g~~i~itG~~-~~~r~~l~~~i~~~Gg~v 52 (129)
T 2d8m_A 24 QGVVVVLSGFQ-NPFRSELRDKALELGAKY 52 (129)
T ss_dssp TTEEEEEESCC-TTHHHHHHHHHHHTTEEE
T ss_pred CCeEEEEeCCC-cHHHHHHHHHHHHcCCEE
Confidence 34678888876 567789999999998653
No 318
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=27.75 E-value=79 Score=25.85 Aligned_cols=39 Identities=13% Similarity=0.371 Sum_probs=27.2
Q ss_pred HHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023559 20 ERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMH 69 (280)
Q Consensus 20 e~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~ln 69 (280)
-++|+.+|+.|=.+ +.+ |-+.+..|.+.+.|++.|++.+
T Consensus 132 l~~i~~fF~~YK~l---------e~g--K~v~v~gw~~~~~A~~~I~~~~ 170 (173)
T 3d53_A 132 KKRIVHFFEHYKDL---------EKG--KWVKVTGWGDKVKAETLIKEGI 170 (173)
T ss_dssp HHHHHHHHHHTTTT---------STT--CCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCc---------cCC--CcEEEccCcCHHHHHHHHHHHH
Confidence 36788899988222 112 3367788999999999887654
No 319
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=27.29 E-value=1.9e+02 Score=21.41 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=29.6
Q ss_pred CCCcHHHHHHHHhhc-C---CeEEE-EEeecCCCCCCccEEEEEeCCHHHHHHH
Q 023559 16 WNVTERQLENAFDRF-G---KIIEC-QIMLERDSGRPRGFGFITYADRRAMDDA 64 (280)
Q Consensus 16 ~~vte~dL~~~F~~~-G---~I~~v-~i~~d~~tg~~rG~aFV~F~~~e~A~~A 64 (280)
.+++..+|++.+.+. . .+..| .|.+.-..+++.|||.| |++.+.|++.
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 80 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMATI 80 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 556778887776543 2 22222 44444455678888876 7888777653
No 320
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=27.18 E-value=37 Score=33.07 Aligned_cols=55 Identities=7% Similarity=0.037 Sum_probs=34.2
Q ss_pred CCCCCcHHHHHHHHh----hcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023559 14 LSWNVTERQLENAFD----RFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMH 69 (280)
Q Consensus 14 Lp~~vte~dL~~~F~----~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~ln 69 (280)
++.+.+.-+|..+|. .+|.|+++.|...+.. +..-.+++.|.+.++|.+|+..+.
T Consensus 281 ~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p-~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 281 GARSGAGINYKHIILGSEGTLGIITEAVMKVHAVP-QAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp ------CCCTHHHHTTCTTSSCEEEEEEEECEECC-SEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcchhhhhccCCCCcEEEEEEEEEEEecc-cceEEEEEEcCCHHHHHHHHHHHH
Confidence 333444456766664 4578898877655432 223477899999999998887664
No 321
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=26.23 E-value=1.1e+02 Score=18.36 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=33.6
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeC-CHHHHHHHHHH
Q 023559 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYA-DRRAMDDAIRE 67 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~-~~e~A~~Ai~~ 67 (280)
+|.|.++.-..-...|++.+.+.-.|..+.+... ...+.|+.. +.+...++|+.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~i~~~i~~ 58 (64)
T 2xmm_A 4 QLTVPTIACEACAEAVTKAVQNEDAQATVQVDLT------SKKVTITSALGEEQLRTAIAS 58 (64)
T ss_dssp EEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTT------TCEEEEECSSCHHHHHHHHHH
T ss_pred EEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEec------CCEEEEEecCCHHHHHHHHHH
Confidence 5667777766566778888888767777776433 224556543 34445555544
No 322
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=26.02 E-value=85 Score=26.26 Aligned_cols=27 Identities=7% Similarity=0.038 Sum_probs=23.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHhcCcee
Q 023559 47 PRGFGFITYADRRAMDDAIREMHGREF 73 (280)
Q Consensus 47 ~rG~aFV~F~~~e~A~~Ai~~lng~~l 73 (280)
.+||.|||=.++..++.||+.+.....
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 689999999999999999988876533
No 323
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Probab=25.70 E-value=2e+02 Score=21.57 Aligned_cols=74 Identities=9% Similarity=0.088 Sum_probs=37.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecC-CCCC---------CccEEEEEeC--C------HHHHHHHHHH
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLER-DSGR---------PRGFGFITYA--D------RRAMDDAIRE 67 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~-~tg~---------~rG~aFV~F~--~------~e~A~~Ai~~ 67 (280)
...|||+++|.... +.+++.+. .|+.|.-+... +... ..++.++.+. + .+....+++.
T Consensus 6 ~~~l~~g~~~~~~~---~~~ll~~~-gi~~Vi~l~~~~e~~~~~~~~~~~~~~gi~~~~~p~~d~~~~~~~~~~~~~~~~ 81 (157)
T 3rgo_A 6 DHTVLLGALPLKNM---TRRLVLDE-NVRGVITMNEEYETRFLCNTSKEWKKAGVEQLRLSTVDMTGVPTLANLHKGVQF 81 (157)
T ss_dssp SSSEEEESCCCGGG---HHHHHHHS-CEEEEEEESCCTTTTTSSCCHHHHHHTTCEEEEECCCTTTSSCCHHHHHHHHHH
T ss_pred cCCeEEecCcCccc---hHHHHHHc-CCCEEEECccccccccccCCHHHHHHCCCeEEEecCCCCCCCChHHHHHHHHHH
Confidence 45799999887643 44555566 45554333322 2111 1245555543 2 1234555555
Q ss_pred hcCceeCCeEEEEEec
Q 023559 68 MHGREFGDRVISVNKA 83 (280)
Q Consensus 68 lng~~l~gr~I~V~~a 83 (280)
++...-.+.+|.|...
T Consensus 82 i~~~~~~~~~vlVHC~ 97 (157)
T 3rgo_A 82 ALKYQALGQCVYVHCK 97 (157)
T ss_dssp HHHHHHTTCEEEEESS
T ss_pred HHHHHHCCCEEEEECC
Confidence 5443335567777654
No 324
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=25.47 E-value=95 Score=29.47 Aligned_cols=63 Identities=14% Similarity=0.252 Sum_probs=34.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHHhh---cCCeEEEEEeecCCCCCCccEE-EEEeCCHHHHHHHHHHh
Q 023559 5 DENRIFVGGLSWNVTERQLENAFDR---FGKIIECQIMLERDSGRPRGFG-FITYADRRAMDDAIREM 68 (280)
Q Consensus 5 ~~~~lfVgnLp~~vte~dL~~~F~~---~G~I~~v~i~~d~~tg~~rG~a-FV~F~~~e~A~~Ai~~l 68 (280)
..++|.|.-||+.|+.+.|.+.... -..|..|.=+++..|.+ .++- .|+++....++..++.|
T Consensus 235 ~~~~ivItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd~-~gvrivI~lk~~~~~~~~l~~L 301 (470)
T 3ilw_A 235 GRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDR-VGLRIVIEIKRDAVAKVVINNL 301 (470)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTT-TBCCEEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccccccCCCC-CceEEEEEECCCCCHHHHHHHH
Confidence 4568999999999988776554432 23333333334431221 2343 35666555555555444
No 325
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=25.35 E-value=34 Score=25.92 Aligned_cols=19 Identities=37% Similarity=1.043 Sum_probs=17.0
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 023559 117 QDDCFKCGRPGHWARDCPS 135 (280)
Q Consensus 117 ~~~~~~~g~~g~~~~~~~~ 135 (280)
...|++|+..+||+++||.
T Consensus 105 ~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 105 TIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CCCTTTTSSSCTTTTTSCC
T ss_pred CCCcCCCCCCCcCcccCcC
Confidence 4679999999999999985
No 326
>3off_A LDLR chaperone BOCA; MESD, molecular chaperone, protein folding, YWTD propeller; 2.00A {Drosophila melanogaster} PDB: 3ofe_A*
Probab=25.19 E-value=2e+02 Score=20.90 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=33.2
Q ss_pred EEEEcCCCCCCcHHHHHHHH--------hhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023559 8 RIFVGGLSWNVTERQLENAF--------DRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMHG 70 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F--------~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng 70 (280)
.+||. +..+.|++++.++. ..+ ...+..++.+. -+++.|.+-..|..|...|-.
T Consensus 13 MmFV~-v~~~~t~~e~d~lt~lWqtsL~Nnh-i~~~ry~Id~d-------r~ifmf~DGs~a~e~kdfL~~ 74 (90)
T 3off_A 13 MTFVS-VTGNPTREESDTITKLWQTSLWNNH-IQAERYMVDDN-------RAIFLFKDGTQAWDAKDFLIE 74 (90)
T ss_dssp EEEEE-ESSSCCHHHHHHHHHHHHHHHHHTT-CCEEEEEEETT-------EEEEEESSGGGHHHHHHHHTT
T ss_pred EEEEE-ecCCCCHHHHHHHHHHHHHHHHhCC-eeEEEEEecCC-------EEEEEEcChHHHHHHHHHHhc
Confidence 45665 55566666655443 333 33333444332 688999999999999877654
No 327
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=31.02 E-value=15 Score=27.39 Aligned_cols=83 Identities=14% Similarity=0.168 Sum_probs=44.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHH--------HhhcC-----CeEEEEEeecCCC----CCCccEEEEEeCCHHHHHHHHH
Q 023559 4 KDENRIFVGGLSWNVTERQLENA--------FDRFG-----KIIECQIMLERDS----GRPRGFGFITYADRRAMDDAIR 66 (280)
Q Consensus 4 ~~~~~lfVgnLp~~vte~dL~~~--------F~~~G-----~I~~v~i~~d~~t----g~~rG~aFV~F~~~e~A~~Ai~ 66 (280)
+.++.|-|-|||..+-..++.-. +..|= .|.+-.|..+... -...|-|.|.|.+.++...||+
T Consensus 16 kqnclikiinipqgtlkaevvlavrhlgyefycdyidensnqinsnliqqdqhpqlndllkegqamirfqnsdeqrlaiq 95 (137)
T 2lsl_A 16 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDENSNQINSNLIQQDQHPQLNDLLKEGQAMIRFQNSDEQRLAIQ 95 (137)
Confidence 45677788899988766554322 22221 1111112111111 1124789999999988888887
Q ss_pred HhcCc-------eeCCeEEEEEecCCC
Q 023559 67 EMHGR-------EFGDRVISVNKAQPK 86 (280)
Q Consensus 67 ~lng~-------~l~gr~I~V~~a~~k 86 (280)
+|-+. +|.+..+.|-...|.
T Consensus 96 kllnhnnnklqieirgqicdvistipe 122 (137)
T 2lsl_A 96 KLLNHNNNKLQIEIRGQICDVISTIPE 122 (137)
Confidence 66433 334555544433343
No 328
>3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.91 E-value=63 Score=26.32 Aligned_cols=28 Identities=18% Similarity=0.045 Sum_probs=16.1
Q ss_pred EEEEcCCCCCCcHHHHHHH-------Hhhc-CCeEEEE
Q 023559 8 RIFVGGLSWNVTERQLENA-------FDRF-GKIIECQ 37 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~-------F~~~-G~I~~v~ 37 (280)
++|| |.+++++++++++ +.+. |.|.+|.
T Consensus 67 ~m~I--lrPdl~eeev~alver~~~iI~~~GG~I~~ve 102 (168)
T 3bbn_F 67 TMAV--LRPDMTEDERLTLTQKYEELLVAGGAMYVEVF 102 (168)
T ss_dssp EEEE--ECTTSCHHHHHSTTHHHHHHHTTTSCEEEEEE
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4555 5667777776544 3333 4676665
No 329
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=24.69 E-value=71 Score=23.83 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=34.2
Q ss_pred CCCCCcHHHHHHHHhhcCCeEEEEEe-ecCCCCCCccEEEEEeCCHHHHHHHHHHhcCceeCCeEEEEEecC
Q 023559 14 LSWNVTERQLENAFDRFGKIIECQIM-LERDSGRPRGFGFITYADRRAMDDAIREMHGREFGDRVISVNKAQ 84 (280)
Q Consensus 14 Lp~~vte~dL~~~F~~~G~I~~v~i~-~d~~tg~~rG~aFV~F~~~e~A~~Ai~~lng~~l~gr~I~V~~a~ 84 (280)
.+..+|+++|+.++...=.+..+.|. .|.+. . -|...+.++.+.||+..- -.+..|.+++.+
T Consensus 32 ~~~~~tweel~~mvk~~f~L~~~~IkY~DEen-D-----~V~i~Sq~E~eEAlkva~---k~~n~L~m~V~~ 94 (101)
T 1wj6_A 32 DPENTTWADIEAMVKVSFDLNTIQIKYLDEEN-E-----EVSINSQGEYEEALKMAV---KQGNQLQMQVHE 94 (101)
T ss_dssp CTTTSCHHHHHHHHHHHHCCSSBCCEEECTTS-C-----EECCCSHHHHHHHHHHHH---HHTSEEEEECCB
T ss_pred CCCCCCHHHHHHHHHHHcCCCceEEEEecCCC-C-----EEEEecHHHHHHHHHHhc---cCCCEEEEEEee
Confidence 45689999999888632233333332 22221 1 255667777777775321 124556776655
No 330
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=24.66 E-value=1.7e+02 Score=22.95 Aligned_cols=48 Identities=17% Similarity=0.336 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHhhc-CC---eEEE-EEeecCCCCCCccEEEEEeCCHHHHHHH
Q 023559 16 WNVTERQLENAFDRF-GK---IIEC-QIMLERDSGRPRGFGFITYADRRAMDDA 64 (280)
Q Consensus 16 ~~vte~dL~~~F~~~-G~---I~~v-~i~~d~~tg~~rG~aFV~F~~~e~A~~A 64 (280)
..++..+|++.+.+. .. ++.| .|.+.-..+++.|||.| |++++.|++.
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 357788998888644 32 2222 34444444677788877 7888877653
No 331
>1rjj_A Expressed protein; beta barrel, homodimer, structural genomics, protein structure initiative, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: d.58.4.4
Probab=24.13 E-value=2.1e+02 Score=20.75 Aligned_cols=75 Identities=5% Similarity=0.082 Sum_probs=41.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHh----hcCCeEEEEEeecC-CC-CCCcc---EEEEEeCCHHHHHHHH---------HHhc
Q 023559 8 RIFVGGLSWNVTERQLENAFD----RFGKIIECQIMLER-DS-GRPRG---FGFITYADRRAMDDAI---------REMH 69 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~----~~G~I~~v~i~~d~-~t-g~~rG---~aFV~F~~~e~A~~Ai---------~~ln 69 (280)
.|.+-.|+..++.++|.+.|. +.-.|+++.+-.+. .+ +..++ ...++|++.++.+..+ +.+
T Consensus 8 HiVlfklk~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~- 86 (111)
T 1rjj_A 8 HLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAF- 86 (111)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHHHGGGGGSCEEEEEEECCSCTTTSTTCCEEEEEEESSHHHHHHHHTSHHHHHHHHHH-
T ss_pred EEEEEEECCcchHHHHHHHHHHHHhcCCceEEEEEcCCCCCccccCCCccEEEEEEECCHHHHHHHhCCHHHHHHHHHH-
Confidence 344446777665555554443 45567788777665 32 22333 3456899888765432 111
Q ss_pred CceeCCeEEEEEecC
Q 023559 70 GREFGDRVISVNKAQ 84 (280)
Q Consensus 70 g~~l~gr~I~V~~a~ 84 (280)
..+....|.|++..
T Consensus 87 -~~~~~~~~v~D~~~ 100 (111)
T 1rjj_A 87 -TAVIDKIVLLDFPV 100 (111)
T ss_dssp -HHTCSEEEEEEEEE
T ss_pred -HHHhcceEEEEeEc
Confidence 23455667777654
No 332
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=23.96 E-value=49 Score=31.20 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=36.4
Q ss_pred CCCCCcHHHHHHHHh----hcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023559 14 LSWNVTERQLENAFD----RFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMH 69 (280)
Q Consensus 14 Lp~~vte~dL~~~F~----~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~ln 69 (280)
+..+.+.-+|..+|. .+|.|+++.|...+.. ...-.+++.|.+.++|.+++..+.
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p-~~~~~~~~~~~~~~~a~~~~~~~~ 252 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKP-RAVETAFVGLQSPDDALKLLGIAQ 252 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECC-SEEEEEEEEESCHHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecC-ceeEEEEEEcCCHHHHHHHHHHHH
Confidence 333444446666664 4577888877655432 234568899999999988887664
No 333
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=23.70 E-value=62 Score=25.17 Aligned_cols=48 Identities=10% Similarity=0.112 Sum_probs=30.2
Q ss_pred EcCCCCCCcHHHHHHHHh-hcC--CeEEEEEeecC----------CCCCCccEEEEEeCCH
Q 023559 11 VGGLSWNVTERQLENAFD-RFG--KIIECQIMLER----------DSGRPRGFGFITYADR 58 (280)
Q Consensus 11 VgnLp~~vte~dL~~~F~-~~G--~I~~v~i~~d~----------~tg~~rG~aFV~F~~~ 58 (280)
|-.+..-++++++++++. .+. +|.+|.|-... +.....+|.||.|++-
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~G 128 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTG 128 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTTC
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeCC
Confidence 556777899999999995 333 56665543222 1123456888888764
No 334
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}
Probab=23.57 E-value=82 Score=26.45 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=30.3
Q ss_pred CCCcHHHHHHHHhhcCC-eEEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023559 16 WNVTERQLENAFDRFGK-IIECQIMLERDSGRPRGFGFITYADRRAMDDAIREMH 69 (280)
Q Consensus 16 ~~vte~dL~~~F~~~G~-I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai~~ln 69 (280)
..+|+++|+++|...-. ...-. .--+.+|.|.+.+.|+++++.|.
T Consensus 89 ~~vtd~ei~~~Y~~~~~~f~~~~---------~~~~~~I~~~~~~~A~~~~~~l~ 134 (252)
T 3rfw_A 89 IKIDAAKVKAFYDQNKDKYVKPA---------RVQAKHILVATEKEAKDIINELK 134 (252)
T ss_dssp CCCCHHHHHHHHHHHGGGSEECC---------EEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhHHhccccc---------eEEEEEEEeCCHHHHHHHHHHHH
Confidence 36899999999976421 11000 01156788888999999988886
No 335
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Probab=23.06 E-value=2.4e+02 Score=21.04 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=44.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCC----CccEEEEEeC-------CHHHHHHHHHHhcCce--
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRFGKIIECQIMLERDSGR----PRGFGFITYA-------DRRAMDDAIREMHGRE-- 72 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~----~rG~aFV~F~-------~~e~A~~Ai~~lng~~-- 72 (280)
..+++++.-|...|.++..+++.+. .|+.|..+....... ..++.|+.+. +.+...++++.++...
T Consensus 15 ~~~~i~s~~p~~~t~~df~~~l~~~-gi~~Iv~l~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~i~~~~~~ 93 (159)
T 1rxd_A 15 NMRFLITHNPTNATLNKFIEELKKY-GVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFRE 93 (159)
T ss_dssp TEEEEECCCCCGGGHHHHHHHHHHT-TEEEEEECSCCCSCCHHHHHTTCEEEECCC--CCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEeCCCccccHHHHHHHHHHc-CCCEEEEcCCCccCHHHHHHcCCEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHh
Confidence 4678888888888888866666666 566665544332211 2367777764 2333444544443221
Q ss_pred eCCeEEEEEecC
Q 023559 73 FGDRVISVNKAQ 84 (280)
Q Consensus 73 l~gr~I~V~~a~ 84 (280)
-.+.+|.|..+.
T Consensus 94 ~~~~~vlVHC~a 105 (159)
T 1rxd_A 94 EPGCCIAVHCVA 105 (159)
T ss_dssp STTCEEEEECSS
T ss_pred CCCCeEEEECCC
Confidence 134566776543
No 336
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=22.99 E-value=1.5e+02 Score=21.20 Aligned_cols=63 Identities=8% Similarity=-0.025 Sum_probs=38.1
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEee-cCCCCCCccEEEEEeCC-HHHHHHHHHHhcC
Q 023559 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIML-ERDSGRPRGFGFITYAD-RRAMDDAIREMHG 70 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~-d~~tg~~rG~aFV~F~~-~e~A~~Ai~~lng 70 (280)
.|-|.-....+++..|.++..+|+.-.+|.--. +.-.+.+-|.-+|++.- .++.++|++.|..
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 89 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRE 89 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 455554555677778888888887544332111 11223456777888864 4556778877754
No 337
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=22.95 E-value=2.5e+02 Score=21.24 Aligned_cols=52 Identities=10% Similarity=0.087 Sum_probs=38.5
Q ss_pred CCCCCcHHHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHHHHHHHH-HHhc
Q 023559 14 LSWNVTERQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRRAMDDAI-REMH 69 (280)
Q Consensus 14 Lp~~vte~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e~A~~Ai-~~ln 69 (280)
++.....+++.+.+.++-+|.+|..+. |...-++.|.+.+.++.+..+ +.+.
T Consensus 76 ~~~~~~~~~~~~~l~~~peV~~~~~vt----G~~d~~~~v~~~d~~~l~~~l~~~l~ 128 (152)
T 2cg4_A 76 LKSAKDYPSALAKLESLDEVTEAYYTT----GHYSIFIKVMCRSIDALQHVLINKIQ 128 (152)
T ss_dssp ESSGGGHHHHHHHHHTCTTEEEEEEES----SSCSEEEEEEESCHHHHHHHHHHTTT
T ss_pred ECCCCCHHHHHHHHhCCcCeEEEEEEe----cccCEEEEEEECCHHHHHHHHHHHhh
Confidence 444334577888889999999998874 444557889999999998887 3444
No 338
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=22.24 E-value=1.8e+02 Score=23.76 Aligned_cols=50 Identities=10% Similarity=-0.090 Sum_probs=33.0
Q ss_pred cEEEEcCCCCCCcHHH--------HHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCCHH
Q 023559 7 NRIFVGGLSWNVTERQ--------LENAFDRFGKIIECQIMLERDSGRPRGFGFITYADRR 59 (280)
Q Consensus 7 ~~lfVgnLp~~vte~d--------L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~~e 59 (280)
.+=||-.||.+++.++ ++++|..+|-|..+-|..+.. ..-.|.|.|.+..
T Consensus 71 are~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~---~NpHaHim~t~R~ 128 (185)
T 2ns6_A 71 FKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGG---ENPHCHLMISERI 128 (185)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETT---TEEEEEEEECCBC
T ss_pred EEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCC---CCceEEEEEeecc
Confidence 3446667999998765 345566677788887776422 2347888887543
No 339
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.67 E-value=31 Score=23.84 Aligned_cols=12 Identities=17% Similarity=0.457 Sum_probs=9.1
Q ss_pred ccEEEEEeCCHH
Q 023559 48 RGFGFITYADRR 59 (280)
Q Consensus 48 rG~aFV~F~~~e 59 (280)
+..|||.|++..
T Consensus 37 ~~~ClV~FeD~s 48 (68)
T 2e5p_A 37 REVCLVQFEDDS 48 (68)
T ss_dssp TTEEEEEETTTE
T ss_pred CcEEEEEEccCC
Confidence 458999998743
No 340
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=21.55 E-value=1.7e+02 Score=23.26 Aligned_cols=48 Identities=8% Similarity=0.281 Sum_probs=28.4
Q ss_pred CCCcHHHHHHHHhh-cCC---eEEE-EEeecCCCCCCccEEEEEeCCHHHHHHH
Q 023559 16 WNVTERQLENAFDR-FGK---IIEC-QIMLERDSGRPRGFGFITYADRRAMDDA 64 (280)
Q Consensus 16 ~~vte~dL~~~F~~-~G~---I~~v-~i~~d~~tg~~rG~aFV~F~~~e~A~~A 64 (280)
..++..+|++.+.+ |.. ++.| .|.+.-..+++.|||.| |++++.|++.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 45677888777764 332 2222 23333334567788877 7788777654
No 341
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=21.55 E-value=1.7e+02 Score=21.59 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=22.8
Q ss_pred HHHHHHHhhcCCeEEEEEeecCCCCCCccEEEEEeCC
Q 023559 21 RQLENAFDRFGKIIECQIMLERDSGRPRGFGFITYAD 57 (280)
Q Consensus 21 ~dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~~ 57 (280)
.+|.+.+... .|.+-.|..+.+++ .-|++++.++
T Consensus 27 PEv~~~L~~a-Gi~~ysIfl~~~~~--~LF~~~E~~d 60 (104)
T 1x8d_A 27 PELEAVLKSH-GAHNYAIYLDKARN--LLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHHT-TEEEEEEEEETTTT--EEEEEEEESC
T ss_pred HHHHHHHHHc-CCeEEEEEEECCCC--eEEEEEEEcC
Confidence 3466777777 56777777765432 2488899887
No 342
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=20.93 E-value=1.1e+02 Score=21.92 Aligned_cols=63 Identities=6% Similarity=-0.046 Sum_probs=35.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCeEEEEEee-cCCCCCCccEEEEEeCC-HHHHHHHHHHhcC
Q 023559 8 RIFVGGLSWNVTERQLENAFDRFGKIIECQIML-ERDSGRPRGFGFITYAD-RRAMDDAIREMHG 70 (280)
Q Consensus 8 ~lfVgnLp~~vte~dL~~~F~~~G~I~~v~i~~-d~~tg~~rG~aFV~F~~-~e~A~~Ai~~lng 70 (280)
.|-|.-....+++..|.++..+|+.-.+|.--. +.-.+..-|.-+|++.- .++.++|++.|..
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 89 (100)
T 2qsw_A 25 IVRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRK 89 (100)
T ss_dssp EEEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHH
Confidence 344443444566677778888886533332111 11223456777888764 4567778877753
No 343
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=20.60 E-value=1.3e+02 Score=28.92 Aligned_cols=63 Identities=11% Similarity=0.215 Sum_probs=31.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHHhhc---CCeEEEEEeecCCCCCCccEEE-EEeCCHHHHHHHHHHhcC
Q 023559 6 ENRIFVGGLSWNVTERQLENAFDRF---GKIIECQIMLERDSGRPRGFGF-ITYADRRAMDDAIREMHG 70 (280)
Q Consensus 6 ~~~lfVgnLp~~vte~dL~~~F~~~---G~I~~v~i~~d~~tg~~rG~aF-V~F~~~e~A~~Ai~~lng 70 (280)
.++|.|+-||+.|+.+.|.+..... .+|.-|.=++|..+ + .++-| |+++....++..++.|-.
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd-~-~gvrivIelk~~~~~e~vl~~L~k 341 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETD-R-TGLRIAIELKKDVNSESIKNYLYK 341 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCB-T-TBCCEEEEC------CHHHHHHTT
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCC-C-CceEEEEEECCCcCHHHHHHHHHH
Confidence 3689999999999887765544321 34433333344322 1 23444 456665556666655544
Done!