Query 023560
Match_columns 280
No_of_seqs 264 out of 1016
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 08:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gnf_A Transcription factor GA 99.7 3.5E-18 1.2E-22 118.9 4.3 43 199-244 4-46 (46)
2 2vut_I AREA, nitrogen regulato 99.7 2.3E-18 7.9E-23 118.2 3.3 42 200-244 2-43 (43)
3 3dfx_A Trans-acting T-cell-spe 99.7 1.9E-17 6.6E-22 122.2 4.4 47 197-246 5-51 (63)
4 4gat_A Nitrogen regulatory pro 99.7 4.1E-17 1.4E-21 121.4 3.8 47 198-247 8-54 (66)
5 2kae_A GATA-type transcription 99.6 3.9E-16 1.3E-20 117.6 2.1 47 198-246 7-53 (71)
6 4hc9_A Trans-acting T-cell-spe 99.5 1.5E-14 5E-19 118.2 4.9 46 199-247 59-104 (115)
7 4hc9_A Trans-acting T-cell-spe 99.3 7.2E-13 2.5E-17 108.2 4.7 45 199-246 5-49 (115)
8 3ogl_Q JAZ1 incomplete degron 98.1 1.3E-06 4.3E-11 51.0 2.2 21 121-141 1-21 (21)
9 3ogk_Q JAZ1 incomplete degron 97.4 4.8E-05 1.6E-09 44.9 1.1 20 126-145 1-20 (22)
10 2r9r_B Paddle chimera voltage 78.8 0.85 2.9E-05 44.7 2.3 26 19-44 4-29 (514)
11 1dl6_A Transcription factor II 59.3 5.2 0.00018 28.1 2.3 34 198-236 10-43 (58)
12 1pft_A TFIIB, PFTFIIBN; N-term 58.8 2 6.8E-05 28.9 -0.0 33 199-236 5-37 (50)
13 4faj_A PRGZ; substrate binding 46.7 4.1 0.00014 38.4 0.0 16 18-33 1-16 (564)
14 3cw2_K Translation initiation 44.5 8.3 0.00028 31.9 1.5 32 197-231 101-132 (139)
15 2d74_B Translation initiation 41.0 8.3 0.00028 32.2 1.0 29 200-231 105-133 (148)
16 1ovx_A ATP-dependent CLP prote 40.3 13 0.00046 27.2 1.9 32 199-232 18-49 (67)
17 2yrk_A Zinc finger homeobox pr 39.4 7.5 0.00025 27.5 0.4 20 217-236 7-26 (55)
18 1nee_A EIF-2-beta, probable tr 39.1 8.7 0.0003 31.7 0.8 29 200-231 103-131 (138)
19 1k81_A EIF-2-beta, probable tr 38.3 4.1 0.00014 26.1 -1.0 29 201-232 2-30 (36)
20 2ds5_A CLPX, ATP-dependent CLP 37.8 18 0.00062 24.9 2.2 32 199-232 11-42 (51)
21 3fwy_A Light-independent proto 37.5 7 0.00024 35.6 0.0 20 26-45 12-31 (314)
22 2zjr_Z 50S ribosomal protein L 32.9 12 0.0004 26.7 0.5 27 197-235 28-54 (60)
23 2k1p_A Zinc finger RAN-binding 31.5 19 0.00066 22.4 1.3 25 197-231 4-28 (33)
24 3k7a_M Transcription initiatio 30.6 16 0.00056 33.6 1.3 30 200-233 22-52 (345)
25 2crr_A Stromal membrane-associ 29.8 38 0.0013 27.8 3.2 38 197-238 27-64 (141)
26 3tcm_A Alanine aminotransferas 28.0 13 0.00043 35.4 0.0 11 92-102 107-117 (500)
27 3v2d_5 50S ribosomal protein L 27.4 13 0.00044 26.5 -0.0 26 198-235 29-54 (60)
28 3t21_A Endo-type membrane-boun 26.7 14 0.00047 31.9 0.0 17 91-107 54-70 (206)
29 3rlb_A THIT; S-component, ECF 26.5 15 0.0005 31.8 0.2 12 18-30 1-12 (192)
30 2raf_A Putative dinucleotide-b 26.4 14 0.00049 31.0 0.1 16 15-30 3-18 (209)
31 2owa_A Arfgap-like finger doma 25.9 48 0.0016 27.2 3.2 68 198-272 35-106 (138)
32 1vkd_A Conserved hypothetical 25.2 18 0.00061 33.0 0.5 11 75-85 65-75 (338)
33 3cng_A Nudix hydrolase; struct 25.0 18 0.00062 29.6 0.4 30 199-230 3-32 (189)
34 2iqj_A Stromal membrane-associ 24.1 50 0.0017 26.8 3.0 38 197-238 25-62 (134)
35 3j20_Y 30S ribosomal protein S 23.5 16 0.00056 24.9 -0.1 33 194-232 14-46 (50)
36 2g2k_A EIF-5, eukaryotic trans 23.4 14 0.00047 31.6 -0.6 31 200-232 97-128 (170)
37 2b0o_E UPLC1; arfgap, structur 23.2 36 0.0012 29.9 2.1 37 197-237 40-76 (301)
38 1wue_A Mandelate racemase/muco 23.2 17 0.00059 33.6 0.0 13 19-31 3-15 (386)
39 3c3r_A Programmed cell death 6 23.1 17 0.0006 34.0 0.0 10 225-234 174-183 (380)
40 2crw_A ARF GAP 3, ADP-ribosyla 22.8 52 0.0018 27.3 2.9 38 197-238 27-64 (149)
41 3tla_A MCCF; serine protease, 22.7 18 0.00062 34.1 0.0 11 95-105 96-106 (371)
42 1wuf_A Hypothetical protein LI 22.7 18 0.00062 33.7 0.0 13 19-31 3-15 (393)
43 2j9u_B VPS36, vacuolar protein 22.3 22 0.00075 26.7 0.4 33 198-231 16-48 (76)
44 4dve_A Biotin transporter BIOY 22.0 21 0.0007 31.0 0.2 6 18-23 1-6 (198)
45 2olm_A Nucleoporin-like protei 21.7 57 0.0019 26.7 2.9 37 198-238 24-60 (140)
46 2cr8_A MDM4 protein; ZF-ranbp 21.6 44 0.0015 23.3 1.8 24 196-229 8-31 (53)
47 2qf7_A Pyruvate carboxylase pr 21.6 20 0.00067 38.7 0.0 11 18-28 1-11 (1165)
48 2htd_A Predicted flavin-nucleo 21.3 20 0.00068 28.3 0.0 18 83-100 65-82 (140)
49 2lcq_A Putative toxin VAPC6; P 21.2 17 0.00057 29.8 -0.5 30 199-236 132-161 (165)
50 2c6a_A Ubiquitin-protein ligas 21.1 51 0.0017 22.4 2.0 24 196-229 10-33 (46)
51 3pwf_A Rubrerythrin; non heme 20.4 25 0.00086 29.5 0.4 25 198-231 137-161 (170)
52 1lko_A Rubrerythrin all-iron(I 20.1 15 0.00051 31.3 -1.1 26 198-231 154-179 (191)
No 1
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.71 E-value=3.5e-18 Score=118.89 Aligned_cols=43 Identities=42% Similarity=0.791 Sum_probs=40.2
Q ss_pred cccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCc
Q 023560 199 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK 244 (280)
Q Consensus 199 ~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~ 244 (280)
...|.+|++ +.||+||+||+|+ +|||||||||++++++||+++
T Consensus 4 ~~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 4 ARECVNCGA--TATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp SCCCTTTCC--CCCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCcCC--CCCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence 467999999 7899999999996 999999999999999999975
No 2
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.71 E-value=2.3e-18 Score=118.19 Aligned_cols=42 Identities=48% Similarity=0.939 Sum_probs=39.5
Q ss_pred ccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCc
Q 023560 200 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK 244 (280)
Q Consensus 200 ~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~ 244 (280)
..|.+|++ +.||+||+||+|+ +|||||||+|++++++||+++
T Consensus 2 ~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~l 43 (43)
T 2vut_I 2 TTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL 43 (43)
T ss_dssp CCCSSSCC--CCCSCCEECTTSC-EECHHHHHHHHHHSSCCCCCC
T ss_pred CcCCccCC--CCCCccccCCCCC-cccHHHHHHHHHhCCCCCCCC
Confidence 56999999 7899999999996 999999999999999999975
No 3
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.68 E-value=1.9e-17 Score=122.15 Aligned_cols=47 Identities=30% Similarity=0.641 Sum_probs=43.1
Q ss_pred cccccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCcCC
Q 023560 197 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAA 246 (280)
Q Consensus 197 ~~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~~~ 246 (280)
.....|.+|++ +.||+||+||+|+ +|||||||||++++++||++++.
T Consensus 5 ~~~~~C~~C~t--t~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~ 51 (63)
T 3dfx_A 5 RAGTSCANCQT--TTTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKK 51 (63)
T ss_dssp CTTCCCTTTCC--SCCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCC
T ss_pred CCCCcCCCcCC--CCCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCC
Confidence 34577999999 7899999999997 99999999999999999999874
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.65 E-value=4.1e-17 Score=121.45 Aligned_cols=47 Identities=43% Similarity=0.824 Sum_probs=43.4
Q ss_pred ccccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCcCCC
Q 023560 198 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAP 247 (280)
Q Consensus 198 ~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~~~~ 247 (280)
....|.+|++ +.||+||+||+|. +|||||||||++++++||++++..
T Consensus 8 ~~~~C~~C~t--~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~ 54 (66)
T 4gat_A 8 GPTTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTD 54 (66)
T ss_dssp SSCCCTTTCC--CCCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCS
T ss_pred CCCCCCCCCC--CCCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccc
Confidence 4578999999 7899999999996 999999999999999999999763
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.57 E-value=3.9e-16 Score=117.64 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=40.1
Q ss_pred ccccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCcCC
Q 023560 198 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAA 246 (280)
Q Consensus 198 ~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~~~ 246 (280)
....|+||++ +.||+||+||....+|||||||||++++++||+++..
T Consensus 7 ~~~~C~nC~t--t~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~ 53 (71)
T 2kae_A 7 KSFQCSNCSV--TETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVN 53 (71)
T ss_dssp -CCCCSSSCC--SCCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHH
T ss_pred CCCcCCccCC--CCCCccccCCCCCCccchHHHHHHHHhCCCCCcccch
Confidence 4578999999 7899999954444499999999999999999998864
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.49 E-value=1.5e-14 Score=118.18 Aligned_cols=46 Identities=30% Similarity=0.654 Sum_probs=42.8
Q ss_pred cccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCcCCC
Q 023560 199 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAP 247 (280)
Q Consensus 199 ~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~~~~ 247 (280)
...|++|++ +.||+||+||+| ++|||||||||++++++||++++..
T Consensus 59 ~~~C~~C~t--~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~ 104 (115)
T 4hc9_A 59 GTSCANCQT--TTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKE 104 (115)
T ss_dssp TCCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCS
T ss_pred cccCCCcCC--CCcceeEECCCC-CCcchHHHHHHHHhCCCCCcccccc
Confidence 478999999 789999999999 8999999999999999999999753
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.33 E-value=7.2e-13 Score=108.16 Aligned_cols=45 Identities=44% Similarity=0.778 Sum_probs=40.6
Q ss_pred cccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCCCCCCcCC
Q 023560 199 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAA 246 (280)
Q Consensus 199 ~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~r~~~~~~ 246 (280)
...|.||++ +.||+||+||+| .+|||||||||++++++||+.+..
T Consensus 5 ~~~C~~Cg~--~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpK 49 (115)
T 4hc9_A 5 GRECVNCGA--TSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPK 49 (115)
T ss_dssp -CCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCC
T ss_pred CCCCCCCCC--ccCCcceECCCC-CCcCcchhhhhhhccccccccccc
Confidence 578999999 789999999999 699999999999999999987644
No 8
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=98.11 E-value=1.3e-06 Score=50.97 Aligned_cols=21 Identities=52% Similarity=0.529 Sum_probs=19.2
Q ss_pred CchHHHHHHHHHHHHHhhhhc.....
Q 023560 121 NQNNRRLASLIRFREKRKERN..... 141 (280)
Q Consensus 121 ~~~~~R~asl~r~~eKrk~r~..... 141 (280)
++|.+|++||+||+||||+|+
T Consensus 1 dlp~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 1 ELPIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred CcchhHHHHHHHHHHHhhccC.....
Confidence 578999999999999999984
No 9
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=97.37 E-value=4.8e-05 Score=44.89 Aligned_cols=20 Identities=60% Similarity=0.652 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhhhccccc
Q 023560 126 RLASLIRFREKRKERNFEKK 145 (280)
Q Consensus 126 R~asl~r~~eKrk~r~f~kk 145 (280)
|++||+||+||||+|+..+.
T Consensus 1 Rk~SLqRFleKRk~R~~~~~ 20 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSKA 20 (26)
T ss_pred CchhHHHHHHHHHHHhhccC
Confidence 68999999999999987653
No 10
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=78.77 E-value=0.85 Score=44.74 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=0.0
Q ss_pred ccccccCCCCCCcCCCCCCCCCCCcc
Q 023560 19 HHVNYVPEHELHHISNGDVMDDEHDE 44 (280)
Q Consensus 19 hh~~~~~~h~~h~~~~~~~~~d~~~~ 44 (280)
||+||+|||++-.-..-....+++.|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (514)
T 2r9r_B 4 HHHHHHHHHGLVPRGSMTVATGDPVD 29 (514)
T ss_dssp --------------------------
T ss_pred cccccccccCcccccccccccccccc
Confidence 44444457777654444444444444
No 11
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=59.28 E-value=5.2 Score=28.06 Aligned_cols=34 Identities=18% Similarity=0.500 Sum_probs=24.1
Q ss_pred ccccccccccccCCCCceecCCCCCCccchhhhHhHHhc
Q 023560 198 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 236 (280)
Q Consensus 198 ~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~ 236 (280)
....|..|+. +++...-..| .+.|..|||-+..+
T Consensus 10 ~~~~Cp~C~~----~~lv~D~~~g-e~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 10 PRVTCPNHPD----AILVEDYRAG-DMICPECGLVVGDR 43 (58)
T ss_dssp SCCSBTTBSS----SCCEECSSSC-CEECTTTCCEECCS
T ss_pred ccccCcCCCC----CceeEeCCCC-eEEeCCCCCEEecc
Confidence 3457999987 3455555566 69999999976544
No 12
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=58.84 E-value=2 Score=28.89 Aligned_cols=33 Identities=21% Similarity=0.618 Sum_probs=21.9
Q ss_pred cccccccccccCCCCceecCCCCCCccchhhhHhHHhc
Q 023560 199 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 236 (280)
Q Consensus 199 ~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~ 236 (280)
...|.+|+. +++-..-..| ...|..||+-|..+
T Consensus 5 ~~~CP~C~~----~~l~~d~~~g-elvC~~CG~v~~e~ 37 (50)
T 1pft_A 5 QKVCPACES----AELIYDPERG-EIVCAKCGYVIEEN 37 (50)
T ss_dssp CCSCTTTSC----CCEEEETTTT-EEEESSSCCBCCCC
T ss_pred cEeCcCCCC----cceEEcCCCC-eEECcccCCccccc
Confidence 457999976 3444433345 68999999966543
No 13
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=46.71 E-value=4.1 Score=38.36 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=0.0
Q ss_pred cccccccCCCCCCcCC
Q 023560 18 IHHVNYVPEHELHHIS 33 (280)
Q Consensus 18 ~hh~~~~~~h~~h~~~ 33 (280)
|||+||+|||+-++.+
T Consensus 1 mhhhhhhhhhhgenlt 16 (564)
T 4faj_A 1 MHHHHHHHHHHGENLT 16 (564)
T ss_dssp ----------------
T ss_pred CCcccccccccccccc
Confidence 4555554444444444
No 14
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=44.55 E-value=8.3 Score=31.88 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=21.4
Q ss_pred cccccccccccccCCCCceecCCCCCCccchhhhH
Q 023560 197 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGL 231 (280)
Q Consensus 197 ~~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl 231 (280)
..-..|..|+- ..|-+-+++..= -.-|+|||-
T Consensus 101 ~~yVlC~~C~s--PdT~l~k~~r~~-~l~C~ACGa 132 (139)
T 3cw2_K 101 KAYVECSTCKS--LDTILKKEKKSW-YIVCLACGA 132 (139)
T ss_dssp SCCSSCCSSSS--SCCCSCSSCSTT-TSSCCC---
T ss_pred HHeeECCCCCC--cCcEEEEeCCeE-EEEecCCCC
Confidence 44578999999 478888865332 468999996
No 15
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=40.96 E-value=8.3 Score=32.23 Aligned_cols=29 Identities=31% Similarity=0.739 Sum_probs=21.8
Q ss_pred ccccccccccCCCCceecCCCCCCccchhhhH
Q 023560 200 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGL 231 (280)
Q Consensus 200 ~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl 231 (280)
..|..|+. ..|-+-+++-.- -.-|+|||-
T Consensus 105 VlC~~C~s--PdT~L~k~~r~~-~l~C~ACGa 133 (148)
T 2d74_B 105 VICPVCGS--PDTKIIKRDRFH-FLKCEACGA 133 (148)
T ss_dssp SSCSSSCC--TTCCCCBSSSSB-CCCCSSSCC
T ss_pred EECCCCCC--cCcEEEEeCCEE-EEEecCCCC
Confidence 57999999 468887765322 368999986
No 16
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=40.27 E-value=13 Score=27.16 Aligned_cols=32 Identities=25% Similarity=0.639 Sum_probs=22.0
Q ss_pred cccccccccccCCCCceecCCCCCCccchhhhHh
Q 023560 199 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLM 232 (280)
Q Consensus 199 ~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~ 232 (280)
...|+-||.+.......=.|| | ...||.|-..
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~ 49 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGP-S-VYICDECVDL 49 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHH
T ss_pred CcEecCCCCCHHHHcccCCCC-C-CChhHHHHHH
Confidence 467999999644444444576 3 4799999753
No 17
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=39.40 E-value=7.5 Score=27.52 Aligned_cols=20 Identities=25% Similarity=0.866 Sum_probs=15.6
Q ss_pred cCCCCCCccchhhhHhHHhc
Q 023560 217 RGPEGPRTLCNACGLMWANK 236 (280)
Q Consensus 217 ~Gp~G~~~LCNACGl~~~~~ 236 (280)
.+|+||++-|.-||..|.-+
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r 26 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSAR 26 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSS
T ss_pred CCCCCCCccccccCcccccc
Confidence 37888888999999877544
No 18
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=39.09 E-value=8.7 Score=31.70 Aligned_cols=29 Identities=31% Similarity=0.796 Sum_probs=22.3
Q ss_pred ccccccccccCCCCceecCCCCCCccchhhhH
Q 023560 200 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGL 231 (280)
Q Consensus 200 ~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl 231 (280)
..|..|+- ..|-+-+++..= -.-|+|||-
T Consensus 103 VlC~~C~s--PdT~l~k~~r~~-~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNR--PDTRIIREGRIS-LLKCEACGA 131 (138)
T ss_dssp HHHTCCSS--CSSCCEEETTTT-EEECSTTSC
T ss_pred EECCCCCC--cCcEEEEcCCeE-EEEccCCCC
Confidence 67999999 578888875332 368999996
No 19
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=38.29 E-value=4.1 Score=26.12 Aligned_cols=29 Identities=34% Similarity=0.844 Sum_probs=20.1
Q ss_pred cccccccccCCCCceecCCCCCCccchhhhHh
Q 023560 201 VCRHCGISEKSTPMMRRGPEGPRTLCNACGLM 232 (280)
Q Consensus 201 ~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~ 232 (280)
.|..|+- .+|-+-+++..- -.-|+|||-.
T Consensus 2 lC~~C~~--peT~l~~~~~~~-~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGK--PDTKIIKEGRVH-LLKCMACGAI 30 (36)
T ss_dssp CCSSSCS--CEEEEEEETTEE-EEEEETTTEE
T ss_pred CCcCCCC--CCcEEEEeCCcE-EEEhhcCCCc
Confidence 5899998 467887764222 2459999964
No 20
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=37.80 E-value=18 Score=24.91 Aligned_cols=32 Identities=25% Similarity=0.639 Sum_probs=21.9
Q ss_pred cccccccccccCCCCceecCCCCCCccchhhhHh
Q 023560 199 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLM 232 (280)
Q Consensus 199 ~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~ 232 (280)
...|+-||.+.......=.|| | ...||.|-..
T Consensus 11 ~~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~ 42 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAGP-S-VYICDECVDL 42 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHH
T ss_pred CcEecCCCCCHHHhcccCCCC-C-CEehHHHHHH
Confidence 367999999644444444566 3 4799999653
No 21
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=37.49 E-value=7 Score=35.64 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=0.0
Q ss_pred CCCCCcCCCCCCCCCCCccC
Q 023560 26 EHELHHISNGDVMDDEHDEG 45 (280)
Q Consensus 26 ~h~~h~~~~~~~~~d~~~~~ 45 (280)
||+.|+.+-.........|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~ 31 (314)
T 3fwy_A 12 HHHHHHGSPKDLTIPTGADG 31 (314)
T ss_dssp --------------------
T ss_pred ccccccCCCCcCCCCCCCCC
Confidence 34444444443334444444
No 22
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=32.87 E-value=12 Score=26.70 Aligned_cols=27 Identities=19% Similarity=0.524 Sum_probs=18.4
Q ss_pred cccccccccccccCCCCceecCCCCCCccchhhhHhHHh
Q 023560 197 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWAN 235 (280)
Q Consensus 197 ~~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~ 235 (280)
.....|.+||.. . -+..+|-.|| +|+-
T Consensus 28 p~l~~c~~cG~~--~---------~pH~vc~~CG-~Y~g 54 (60)
T 2zjr_Z 28 PNLTECPQCHGK--K---------LSHHICPNCG-YYDG 54 (60)
T ss_dssp CCCEECTTTCCE--E---------CTTBCCTTTC-BSSS
T ss_pred CCceECCCCCCE--e---------CCceEcCCCC-cCCC
Confidence 356789999982 1 1357999999 4443
No 23
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=31.52 E-value=19 Score=22.36 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=17.5
Q ss_pred cccccccccccccCCCCceecCCCCCCccchhhhH
Q 023560 197 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGL 231 (280)
Q Consensus 197 ~~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl 231 (280)
...|.|..|+. ..-.|| ..||.|+.
T Consensus 4 ~gDW~C~~C~~---~Nfa~R-------~~C~~C~~ 28 (33)
T 2k1p_A 4 ANDWQCKTCSN---VNWARR-------SECNMCNT 28 (33)
T ss_dssp SSSCBCSSSCC---BCCTTC-------SBCSSSCC
T ss_pred CCCcccCCCCC---cccccc-------ccccccCC
Confidence 45799999987 234333 68888875
No 24
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=30.56 E-value=16 Score=33.64 Aligned_cols=30 Identities=33% Similarity=0.913 Sum_probs=14.8
Q ss_pred ccccccccccCCCC-ceecCCCCCCccchhhhHhH
Q 023560 200 IVCRHCGISEKSTP-MMRRGPEGPRTLCNACGLMW 233 (280)
Q Consensus 200 ~~C~~Cg~~~~~Tp-~wR~Gp~G~~~LCNACGl~~ 233 (280)
..|.+|+.. +| +-..-..| .+.|..||+-+
T Consensus 22 ~~Cp~Cg~~---~~~iv~D~~~G-~~vC~~CG~Vl 52 (345)
T 3k7a_M 22 LTCPECKVY---PPKIVERFSEG-DVVCALCGLVL 52 (345)
T ss_dssp CCCSTTCCS---CCCCCCCSSSC-SCCCSSSCCCC
T ss_pred CcCcCCCCC---CCceEEECCCC-CEecCCCCeEc
Confidence 456666651 12 22222344 46677776644
No 25
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.75 E-value=38 Score=27.81 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=30.7
Q ss_pred cccccccccccccCCCCceecCCCCCCccchhhhHhHHhcCC
Q 023560 197 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGT 238 (280)
Q Consensus 197 ~~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~ 238 (280)
+....|..|+. .-|.|=.=.-| -.||-.|.-..+.-|+
T Consensus 27 p~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 64 (141)
T 2crr_A 27 EDNKYCADCEA---KGPRWASWNIG-VFICIRCAGIHRNLGV 64 (141)
T ss_dssp GGGSSCSSSCC---SSCCSEETTTT-EECCHHHHHHHHHHCT
T ss_pred ccCCcCCCCCC---CCCCeEEeccC-eEEhhhhhHhHhcCCC
Confidence 45678999998 36899888888 6899999887777664
No 26
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=27.95 E-value=13 Score=35.36 Aligned_cols=11 Identities=9% Similarity=0.138 Sum_probs=4.4
Q ss_pred CCHHHHHHHHH
Q 023560 92 VSPEKVQAVLL 102 (280)
Q Consensus 92 v~p~Kaq~im~ 102 (280)
+|++-+++++.
T Consensus 107 ~p~~~~~~a~~ 117 (500)
T 3tcm_A 107 FSADSISRAKQ 117 (500)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 34444444433
No 27
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=27.42 E-value=13 Score=26.51 Aligned_cols=26 Identities=31% Similarity=0.806 Sum_probs=17.7
Q ss_pred ccccccccccccCCCCceecCCCCCCccchhhhHhHHh
Q 023560 198 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWAN 235 (280)
Q Consensus 198 ~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~ 235 (280)
....|.+||.. . -+..+|-.|| ||+-
T Consensus 29 ~l~~c~~cGe~--~---------~~H~vc~~CG-~Y~g 54 (60)
T 3v2d_5 29 TLVPCPECKAM--K---------PPHTVCPECG-YYAG 54 (60)
T ss_dssp CCEECTTTCCE--E---------CTTSCCTTTC-EETT
T ss_pred ceeECCCCCCe--e---------cceEEcCCCC-cCCC
Confidence 45779999972 1 1257999999 4443
No 28
>3t21_A Endo-type membrane-bound lytic murein transglycos; goose type lysozyme-like structure, lytic transglycosylase,; HET: NAG; 1.90A {Escherichia coli} PDB: 3t1z_A* 4hjy_A* 4hjz_A* 3t36_A 3t4i_A* 4hjv_A* 2y8p_A
Probab=26.68 E-value=14 Score=31.92 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=12.7
Q ss_pred CCCHHHHHHHHHHhCCC
Q 023560 91 SVSPEKVQAVLLLLGGR 107 (280)
Q Consensus 91 ~v~p~Kaq~im~la~g~ 107 (280)
.++|+-+.+|+..-++.
T Consensus 54 gv~p~ll~Ai~~~ES~f 70 (206)
T 3t21_A 54 GVDPQLITAIIAIQSGG 70 (206)
T ss_dssp TCCHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHhCCC
Confidence 57888888887777655
No 29
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=26.51 E-value=15 Score=31.78 Aligned_cols=12 Identities=25% Similarity=0.539 Sum_probs=0.0
Q ss_pred cccccccCCCCCC
Q 023560 18 IHHVNYVPEHELH 30 (280)
Q Consensus 18 ~hh~~~~~~h~~h 30 (280)
|||+|| |||.+.
T Consensus 1 ~~~~~~-~~~~~~ 12 (192)
T 3rlb_A 1 MHHHHH-HHHAMS 12 (192)
T ss_dssp -------------
T ss_pred CCccch-hhhhhh
Confidence 465444 344443
No 30
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=26.41 E-value=14 Score=30.98 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=0.0
Q ss_pred CCccccccccCCCCCC
Q 023560 15 QHAIHHVNYVPEHELH 30 (280)
Q Consensus 15 ~~~~hh~~~~~~h~~h 30 (280)
+.+|||+||+|+-.+.
T Consensus 3 ~~~~~~~~~~~~~~~~ 18 (209)
T 2raf_A 3 SDKIHHHHHHENLYFQ 18 (209)
T ss_dssp ----------------
T ss_pred cccccccccccccccC
Confidence 4678877765443333
No 31
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=25.88 E-value=48 Score=27.17 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=42.9
Q ss_pred ccccccccccccCCCCceecCCCCCCccchhhhHhHHhcCCC----CCCCcCCCCCCCCccCCCCCcCcchhHHHHHHH
Q 023560 198 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL----RDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRA 272 (280)
Q Consensus 198 ~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~~----r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (280)
....|..|+.. -|.|=.=.-| -.+|-.|.-..+.-|+. |.+.+..=.+.+ +......||..++.+.+.
T Consensus 35 ~N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~---l~~m~~~GN~~an~~~e~ 106 (138)
T 2owa_A 35 ENRTCFDCESR---NPTWLSLSFA-VFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQ---LVRMDIGGNGRARNYFKQ 106 (138)
T ss_dssp GGGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHTTCTTTCCEEETTTSCCCHHH---HHHHHHCCHHHHHHHHHH
T ss_pred CCCcCCCCcCC---CCCeEEecCC-EEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHH---HHHHHhhccHHHHHHHHH
Confidence 46789999983 5999988888 68999998877776643 444443322111 122233455555555544
No 32
>1vkd_A Conserved hypothetical protein TM1225; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.10A {Thermotoga maritima} SCOP: b.67.2.4
Probab=25.19 E-value=18 Score=33.00 Aligned_cols=11 Identities=9% Similarity=0.114 Sum_probs=6.9
Q ss_pred CCceEEEeccE
Q 023560 75 GDQLTLSFQGQ 85 (280)
Q Consensus 75 ~aqLTify~G~ 85 (280)
...+-|||.+.
T Consensus 65 ~g~~~lfY~~~ 75 (338)
T 1vkd_A 65 NGEFVGVFRID 75 (338)
T ss_dssp TTEEEEEEEEE
T ss_pred CCEEEEEEEEE
Confidence 45577777654
No 33
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=24.96 E-value=18 Score=29.62 Aligned_cols=30 Identities=27% Similarity=0.596 Sum_probs=21.3
Q ss_pred cccccccccccCCCCceecCCCCCCccchhhh
Q 023560 199 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACG 230 (280)
Q Consensus 199 ~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACG 230 (280)
.+.|..||. ..+...-.|..+....|-.||
T Consensus 3 ~~~C~~CG~--~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 3 MKFCSQCGG--EVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CCBCTTTCC--BCEEECCTTCSSCEEEETTTT
T ss_pred cccCchhCC--ccccccccCCCCcceECCCCC
Confidence 468999999 344444455566567899998
No 34
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=24.09 E-value=50 Score=26.80 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=31.1
Q ss_pred cccccccccccccCCCCceecCCCCCCccchhhhHhHHhcCC
Q 023560 197 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGT 238 (280)
Q Consensus 197 ~~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~ 238 (280)
+.+..|..|+.. -|.|=.=.-| -.+|-.|.-..+.-|+
T Consensus 25 p~N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~lG~ 62 (134)
T 2iqj_A 25 EDNKFCADCQSK---GPRWASWNIG-VFICIRCAGIHRNLGV 62 (134)
T ss_dssp GGGGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred cCCCcCCcCcCC---CCCeEEecCC-EEEhHhhhHHHhcCCC
Confidence 456889999984 5999988888 6899999887777664
No 35
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.53 E-value=16 Score=24.89 Aligned_cols=33 Identities=27% Similarity=0.643 Sum_probs=22.8
Q ss_pred CCccccccccccccccCCCCceecCCCCCCccchhhhHh
Q 023560 194 GSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLM 232 (280)
Q Consensus 194 ~~~~~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~ 232 (280)
...+..+.|..||.. -.|.. ...+..|..||.-
T Consensus 14 kv~~~~k~CP~CG~~----~fm~~--~~~R~~C~kCG~t 46 (50)
T 3j20_Y 14 KVIRKNKFCPRCGPG----VFMAD--HGDRWACGKCGYT 46 (50)
T ss_dssp CEECSSEECSSSCSS----CEEEE--CSSEEECSSSCCE
T ss_pred EEEEecccCCCCCCc----eEEec--CCCeEECCCCCCE
Confidence 345677899999982 23443 3446899999973
No 36
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=23.39 E-value=14 Score=31.62 Aligned_cols=31 Identities=23% Similarity=0.526 Sum_probs=21.1
Q ss_pred ccccccccccCCCCceecCCCC-CCccchhhhHh
Q 023560 200 IVCRHCGISEKSTPMMRRGPEG-PRTLCNACGLM 232 (280)
Q Consensus 200 ~~C~~Cg~~~~~Tp~wR~Gp~G-~~~LCNACGl~ 232 (280)
..|..|+- ..|-+-+....+ --.-|+|||-.
T Consensus 97 VlC~~C~s--PdT~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 97 VLCPECEN--PETDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp HSCTTTSS--SCEEEEEETTTTEEEEEETTTCCC
T ss_pred EECCCCCC--CccEEEEecCCCEEEEEccccCCc
Confidence 56999999 578888732122 12579999973
No 37
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=23.17 E-value=36 Score=29.92 Aligned_cols=37 Identities=22% Similarity=0.429 Sum_probs=29.2
Q ss_pred cccccccccccccCCCCceecCCCCCCccchhhhHhHHhcC
Q 023560 197 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKG 237 (280)
Q Consensus 197 ~~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g 237 (280)
+....|..|+.. -|.|-.-.-| ..+|-.|--..+.-|
T Consensus 40 ~~n~~c~dc~~~---~p~w~s~~~g-~~~c~~cs~~hr~lg 76 (301)
T 2b0o_E 40 PGNSQCCDCGAA---DPTWLSTNLG-VLTCIQCSGVHRELG 76 (301)
T ss_dssp TTTTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHC
T ss_pred CCCCcCCCCCCC---CCCeEEeecC-eEEcHHHHHHHHhhC
Confidence 356789999983 5999999999 699999966555544
No 38
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1
Probab=23.17 E-value=17 Score=33.65 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=0.0
Q ss_pred ccccccCCCCCCc
Q 023560 19 HHVNYVPEHELHH 31 (280)
Q Consensus 19 hh~~~~~~h~~h~ 31 (280)
||+||+|||+|-.
T Consensus 3 ~~~~~~~~~~~~~ 15 (386)
T 1wue_A 3 HHHHHHHHHGLVP 15 (386)
T ss_dssp -------------
T ss_pred CccccccccccCC
Confidence 3333334666543
No 39
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=23.09 E-value=17 Score=33.95 Aligned_cols=10 Identities=20% Similarity=0.086 Sum_probs=5.4
Q ss_pred cchhhhHhHH
Q 023560 225 LCNACGLMWA 234 (280)
Q Consensus 225 LCNACGl~~~ 234 (280)
|+.|-|.+-.
T Consensus 174 fq~AAG~f~~ 183 (380)
T 3c3r_A 174 YQFASGAFLH 183 (380)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5556666443
No 40
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.84 E-value=52 Score=27.34 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=31.4
Q ss_pred cccccccccccccCCCCceecCCCCCCccchhhhHhHHhcCC
Q 023560 197 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGT 238 (280)
Q Consensus 197 ~~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~ 238 (280)
+.+..|..|+. .-|.|=.=.-| -.+|-.|--..+.-|+
T Consensus 27 p~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 64 (149)
T 2crw_A 27 PTNKVCFDCGA---KNPSWASITYG-VFLCIDCSGSHRSLGV 64 (149)
T ss_dssp TTTSBCSSSCC---BSCCCEETTTT-EECCHHHHHHHHHHCT
T ss_pred cCCCcCCCCcC---CCCCcEEeccC-EEEchhcchhhccCCC
Confidence 35688999998 46999888888 6899999887777665
No 41
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=22.68 E-value=18 Score=34.07 Aligned_cols=11 Identities=27% Similarity=0.160 Sum_probs=5.1
Q ss_pred HHHHHHHHHhC
Q 023560 95 EKVQAVLLLLG 105 (280)
Q Consensus 95 ~Kaq~im~la~ 105 (280)
+.|++++.++.
T Consensus 96 ~Ra~dL~~af~ 106 (371)
T 3tla_A 96 ERAQEFNELVY 106 (371)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 34455544443
No 42
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1
Probab=22.65 E-value=18 Score=33.67 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=0.0
Q ss_pred ccccccCCCCCCc
Q 023560 19 HHVNYVPEHELHH 31 (280)
Q Consensus 19 hh~~~~~~h~~h~ 31 (280)
||+||+|||+|-.
T Consensus 3 ~~~~~~~~~~~~~ 15 (393)
T 1wuf_A 3 HHHHHHHHHGLVP 15 (393)
T ss_dssp -------------
T ss_pred CccccccccCccC
Confidence 3333334666543
No 43
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=22.26 E-value=22 Score=26.68 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=22.5
Q ss_pred ccccccccccccCCCCceecCCCCCCccchhhhH
Q 023560 198 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGL 231 (280)
Q Consensus 198 ~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl 231 (280)
..|.|.-|..+ ..++.+=.--..+.+-|-+||+
T Consensus 16 ~tWVCpICsfs-N~v~s~fdp~~~~lPpC~aCGI 48 (76)
T 2j9u_B 16 STWVCPICMVS-NETQGEFTKDTLPTPICINCGV 48 (76)
T ss_dssp EEEECTTTCCE-EEESSCCCTTCSSCCBCTTTCC
T ss_pred cceECcccccc-CcCccccCCCCCCCCcccccCc
Confidence 56999999964 3444443222255689999998
No 44
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=22.04 E-value=21 Score=31.03 Aligned_cols=6 Identities=33% Similarity=0.639 Sum_probs=0.0
Q ss_pred cccccc
Q 023560 18 IHHVNY 23 (280)
Q Consensus 18 ~hh~~~ 23 (280)
|||+||
T Consensus 1 ~~~~~~ 6 (198)
T 4dve_A 1 MHHHHH 6 (198)
T ss_dssp ------
T ss_pred CCcchh
Confidence 454444
No 45
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=21.69 E-value=57 Score=26.69 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=29.0
Q ss_pred ccccccccccccCCCCceecCCCCCCccchhhhHhHHhcCC
Q 023560 198 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGT 238 (280)
Q Consensus 198 ~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~g~ 238 (280)
.+..|..|+. .-|.|=.=.-| -.+|-.|.-..+.-|+
T Consensus 24 ~N~~CaDCg~---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 24 HNRKCFDCDQ---RGPTYVNMTVG-SFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGGSCTTTCS---SCCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred CCCcCCCCCC---CCCCceeeccC-EEEchhccchhccCCC
Confidence 4578999998 46999888888 6899999876555443
No 46
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=21.58 E-value=44 Score=23.33 Aligned_cols=24 Identities=21% Similarity=0.617 Sum_probs=18.4
Q ss_pred ccccccccccccccCCCCceecCCCCCCccchhh
Q 023560 196 QNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNAC 229 (280)
Q Consensus 196 ~~~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNAC 229 (280)
....|.|..|.. ..+|+- ..|..|
T Consensus 8 ~eD~WkC~~C~k--~N~Pl~--------ryC~rC 31 (53)
T 2cr8_A 8 SEDEWQCTECKK--FNSPSK--------RYCFRC 31 (53)
T ss_dssp CSCCEECSSSCC--EECSSC--------CBCTTT
T ss_pred Ccceeecccccc--cCCCcc--------chhHHH
Confidence 346799999998 788983 467776
No 47
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=21.55 E-value=20 Score=38.74 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=0.0
Q ss_pred cccccccCCCC
Q 023560 18 IHHVNYVPEHE 28 (280)
Q Consensus 18 ~hh~~~~~~h~ 28 (280)
|||+||+|||+
T Consensus 1 ~~~~~~~~~~~ 11 (1165)
T 2qf7_A 1 MHHHHHHHHHG 11 (1165)
T ss_dssp -----------
T ss_pred CCccccccccC
Confidence 56666644443
No 48
>2htd_A Predicted flavin-nucleotide-binding protein from family structurally related to pyridoxine...; putative pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp}
Probab=21.31 E-value=20 Score=28.33 Aligned_cols=18 Identities=6% Similarity=0.193 Sum_probs=12.0
Q ss_pred ccEEeeecCCCHHHHHHH
Q 023560 83 QGQVYVFDSVSPEKVQAV 100 (280)
Q Consensus 83 ~G~v~Vfd~v~p~Kaq~i 100 (280)
.|.++.++.....|++.|
T Consensus 65 ~~~l~f~~~~~~~k~~nL 82 (140)
T 2htd_A 65 PSHLQYLEKTKGEAYENI 82 (140)
T ss_dssp TTEEEEEESSCCHHHHHH
T ss_pred CCEEEEeccCCchHHHHh
Confidence 566776666666677665
No 49
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=21.21 E-value=17 Score=29.80 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=20.5
Q ss_pred cccccccccccCCCCceecCCCCCCccchhhhHhHHhc
Q 023560 199 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 236 (280)
Q Consensus 199 ~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl~~~~~ 236 (280)
..+|..||.- ...+ .+.+.|-.||-..++.
T Consensus 132 ~y~C~~Cg~~---~~~~-----~~~~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 132 RYVCIGCGRK---FSTL-----PPGGVCPDCGSKVKLI 161 (165)
T ss_dssp CEEESSSCCE---ESSC-----CGGGBCTTTCCBEEEC
T ss_pred EEECCCCCCc---ccCC-----CCCCcCCCCCCcceeC
Confidence 5789999973 3332 3346999999875443
No 50
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=21.10 E-value=51 Score=22.44 Aligned_cols=24 Identities=25% Similarity=0.666 Sum_probs=18.8
Q ss_pred ccccccccccccccCCCCceecCCCCCCccchhh
Q 023560 196 QNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNAC 229 (280)
Q Consensus 196 ~~~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNAC 229 (280)
....|.|..|.. ..+|+ ...|+.|
T Consensus 10 ~~D~WkC~~C~~--~N~Pl--------~r~C~rC 33 (46)
T 2c6a_A 10 LADYWKCTSCNE--MNPPL--------PSHCNRC 33 (46)
T ss_dssp GGGCEECTTTCC--EECSS--------CSSCTTT
T ss_pred ccceEecccccc--cCCCc--------cchhhHH
Confidence 346799999998 78888 4468777
No 51
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.36 E-value=25 Score=29.51 Aligned_cols=25 Identities=32% Similarity=0.905 Sum_probs=17.0
Q ss_pred ccccccccccccCCCCceecCCCCCCccchhhhH
Q 023560 198 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGL 231 (280)
Q Consensus 198 ~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl 231 (280)
..|+|.+||.. ... +-| ..|-.||-
T Consensus 137 ~~~~C~~CG~i--~~~------~~p-~~CP~Cg~ 161 (170)
T 3pwf_A 137 KVYICPICGYT--AVD------EAP-EYCPVCGA 161 (170)
T ss_dssp CEEECTTTCCE--EES------CCC-SBCTTTCC
T ss_pred CeeEeCCCCCe--eCC------CCC-CCCCCCCC
Confidence 45899999983 221 222 38999985
No 52
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.14 E-value=15 Score=31.25 Aligned_cols=26 Identities=38% Similarity=0.912 Sum_probs=17.4
Q ss_pred ccccccccccccCCCCceecCCCCCCccchhhhH
Q 023560 198 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGL 231 (280)
Q Consensus 198 ~~~~C~~Cg~~~~~Tp~wR~Gp~G~~~LCNACGl 231 (280)
..|+|.+||.. .+ |.+-| ..|-.||-
T Consensus 154 ~~~~C~~CG~~--~~-----g~~~p-~~CP~C~~ 179 (191)
T 1lko_A 154 TKWRCRNCGYV--HE-----GTGAP-ELCPACAH 179 (191)
T ss_dssp EEEEETTTCCE--EE-----EEECC-SBCTTTCC
T ss_pred ceEEECCCCCE--ee-----CCCCC-CCCCCCcC
Confidence 35999999983 22 32332 38999986
Done!