Query 023562
Match_columns 280
No_of_seqs 301 out of 2129
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:59:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05891 Methyltransf_PK: AdoM 100.0 9.4E-30 2E-34 212.3 7.3 167 102-276 2-168 (218)
2 COG2226 UbiE Methylase involve 99.9 4.3E-22 9.4E-27 170.4 12.2 111 155-273 49-160 (238)
3 PF01209 Ubie_methyltran: ubiE 99.9 1E-21 2.2E-26 169.3 8.5 112 155-274 45-158 (233)
4 PLN02396 hexaprenyldihydroxybe 99.8 6.8E-20 1.5E-24 164.6 13.3 107 156-270 130-236 (322)
5 PLN02233 ubiquinone biosynthes 99.8 1.5E-19 3.3E-24 158.7 13.1 115 155-274 71-187 (261)
6 PF08241 Methyltransf_11: Meth 99.8 2.6E-19 5.6E-24 132.0 10.9 95 162-267 1-95 (95)
7 PLN02244 tocopherol O-methyltr 99.8 5.9E-19 1.3E-23 160.6 15.0 110 156-272 117-226 (340)
8 KOG1540 Ubiquinone biosynthesi 99.8 5.4E-19 1.2E-23 149.5 11.6 138 128-273 74-218 (296)
9 PF12847 Methyltransf_18: Meth 99.8 8.5E-19 1.8E-23 133.8 11.0 108 157-270 1-112 (112)
10 PTZ00098 phosphoethanolamine N 99.8 2.1E-18 4.6E-23 151.6 14.3 111 155-273 50-160 (263)
11 PRK11207 tellurite resistance 99.8 1.4E-18 3.1E-23 146.4 12.7 107 157-271 30-136 (197)
12 COG2227 UbiG 2-polyprenyl-3-me 99.8 3E-19 6.4E-24 150.8 7.3 105 157-271 59-163 (243)
13 KOG1270 Methyltransferases [Co 99.8 1E-18 2.2E-23 148.7 9.2 108 158-271 90-197 (282)
14 PF02353 CMAS: Mycolic acid cy 99.8 3.9E-18 8.5E-23 150.2 12.7 127 135-272 43-169 (273)
15 COG2230 Cfa Cyclopropane fatty 99.8 9.7E-18 2.1E-22 146.2 14.0 112 155-274 70-181 (283)
16 PRK15451 tRNA cmo(5)U34 methyl 99.8 7.3E-18 1.6E-22 146.9 13.2 111 157-274 56-169 (247)
17 TIGR00477 tehB tellurite resis 99.8 7.2E-18 1.6E-22 141.9 11.9 107 157-272 30-136 (195)
18 PF13847 Methyltransf_31: Meth 99.8 6.4E-18 1.4E-22 136.5 11.1 106 157-271 3-112 (152)
19 TIGR02752 MenG_heptapren 2-hep 99.7 1.2E-17 2.6E-22 143.9 11.8 110 155-272 43-154 (231)
20 PF13649 Methyltransf_25: Meth 99.7 3.5E-18 7.5E-23 128.5 6.8 96 161-263 1-101 (101)
21 PF03848 TehB: Tellurite resis 99.7 2.7E-17 5.9E-22 136.6 11.6 109 156-273 29-137 (192)
22 TIGR00740 methyltransferase, p 99.7 3.9E-17 8.5E-22 141.6 12.3 110 157-273 53-165 (239)
23 PRK11036 putative S-adenosyl-L 99.7 2.5E-17 5.4E-22 144.2 10.4 105 157-269 44-149 (255)
24 PRK10258 biotin biosynthesis p 99.7 1E-16 2.2E-21 140.0 14.1 101 157-271 42-142 (251)
25 PRK12335 tellurite resistance 99.7 6.6E-17 1.4E-21 143.9 11.8 106 157-271 120-225 (287)
26 PRK14103 trans-aconitate 2-met 99.7 6.5E-17 1.4E-21 141.6 10.7 99 155-269 27-126 (255)
27 PRK15068 tRNA mo(5)U34 methylt 99.7 1.9E-16 4.1E-21 142.9 12.9 108 156-271 121-228 (322)
28 TIGR03587 Pse_Me-ase pseudamin 99.7 5.1E-16 1.1E-20 131.4 14.6 103 156-272 42-145 (204)
29 PLN02336 phosphoethanolamine N 99.7 3.3E-16 7.1E-21 148.8 14.9 110 155-273 264-373 (475)
30 PRK09489 rsmC 16S ribosomal RN 99.7 7.2E-16 1.6E-20 140.0 16.0 215 35-271 76-305 (342)
31 TIGR03840 TMPT_Se_Te thiopurin 99.7 4.6E-16 1E-20 132.4 13.3 111 157-268 34-151 (213)
32 PRK01683 trans-aconitate 2-met 99.7 3.9E-16 8.4E-21 136.8 13.0 100 155-268 29-129 (258)
33 smart00828 PKS_MT Methyltransf 99.7 2.9E-16 6.3E-21 134.6 11.4 105 160-272 2-107 (224)
34 PRK11873 arsM arsenite S-adeno 99.7 4.4E-16 9.6E-21 137.5 12.7 110 155-272 75-186 (272)
35 TIGR00452 methyltransferase, p 99.7 5.3E-16 1.1E-20 139.0 12.7 109 155-271 119-227 (314)
36 PRK05785 hypothetical protein; 99.7 1.7E-16 3.8E-21 136.4 9.2 90 157-262 51-140 (226)
37 PLN02336 phosphoethanolamine N 99.7 9.7E-16 2.1E-20 145.6 14.2 108 157-273 37-146 (475)
38 TIGR02072 BioC biotin biosynth 99.7 1.3E-15 2.8E-20 131.2 13.6 103 157-271 34-137 (240)
39 PF13489 Methyltransf_23: Meth 99.7 4.7E-16 1E-20 125.8 10.0 98 156-272 21-118 (161)
40 PF08242 Methyltransf_12: Meth 99.7 1.6E-17 3.5E-22 124.2 0.9 96 162-265 1-99 (99)
41 PF05401 NodS: Nodulation prot 99.7 5.9E-16 1.3E-20 127.5 9.5 103 157-269 43-146 (201)
42 smart00138 MeTrc Methyltransfe 99.6 7.5E-16 1.6E-20 135.4 10.6 117 156-272 98-247 (264)
43 KOG4300 Predicted methyltransf 99.6 3.9E-16 8.5E-21 128.3 7.6 113 157-277 76-191 (252)
44 COG2813 RsmC 16S RNA G1207 met 99.6 6.2E-15 1.3E-19 129.1 15.3 217 35-270 37-267 (300)
45 PRK08317 hypothetical protein; 99.6 3.8E-15 8.3E-20 128.1 13.9 107 155-270 17-125 (241)
46 PLN02490 MPBQ/MSBQ methyltrans 99.6 1.7E-15 3.7E-20 136.8 12.0 105 156-271 112-217 (340)
47 PRK06922 hypothetical protein; 99.6 1.9E-15 4.2E-20 144.6 12.8 110 157-273 418-541 (677)
48 PRK00107 gidB 16S rRNA methylt 99.6 2.1E-15 4.5E-20 125.8 11.1 102 157-271 45-147 (187)
49 PRK11705 cyclopropane fatty ac 99.6 4.3E-15 9.3E-20 137.0 14.1 105 155-271 165-269 (383)
50 PRK00216 ubiE ubiquinone/menaq 99.6 2.8E-15 6.1E-20 129.2 11.6 109 157-272 51-161 (239)
51 PRK06202 hypothetical protein; 99.6 3.6E-15 7.7E-20 128.8 12.0 104 156-270 59-167 (232)
52 COG4106 Tam Trans-aconitate me 99.6 1.5E-15 3.3E-20 125.8 8.6 103 155-271 28-133 (257)
53 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 8E-15 1.7E-19 125.1 13.0 106 157-272 39-146 (223)
54 KOG3178 Hydroxyindole-O-methyl 99.6 6.5E-15 1.4E-19 130.8 12.4 160 101-274 115-280 (342)
55 PRK13255 thiopurine S-methyltr 99.6 1.8E-14 3.9E-19 123.1 14.8 111 156-267 36-153 (218)
56 PRK15001 SAM-dependent 23S rib 99.6 5.3E-14 1.1E-18 128.8 18.8 217 34-270 105-341 (378)
57 TIGR02716 C20_methyl_CrtF C-20 99.6 1E-14 2.2E-19 131.1 13.8 111 155-273 147-258 (306)
58 TIGR00138 gidB 16S rRNA methyl 99.6 6.3E-15 1.4E-19 122.5 10.7 100 157-269 42-142 (181)
59 TIGR02469 CbiT precorrin-6Y C5 99.6 2.5E-14 5.4E-19 110.7 12.3 103 155-268 17-121 (124)
60 PRK00121 trmB tRNA (guanine-N( 99.6 7.3E-15 1.6E-19 124.3 8.9 107 157-269 40-156 (202)
61 PF05175 MTS: Methyltransferas 99.6 2.8E-14 6.1E-19 117.4 11.9 121 135-269 16-140 (170)
62 TIGR02021 BchM-ChlM magnesium 99.6 2E-14 4.4E-19 122.9 11.2 103 157-268 55-157 (219)
63 PLN02585 magnesium protoporphy 99.6 2E-14 4.3E-19 128.9 11.6 104 157-266 144-247 (315)
64 KOG1271 Methyltransferases [Ge 99.6 1.7E-14 3.7E-19 116.5 8.8 104 160-268 70-180 (227)
65 TIGR00537 hemK_rel_arch HemK-r 99.5 4.3E-14 9.3E-19 117.2 11.2 106 157-272 19-143 (179)
66 PRK13944 protein-L-isoaspartat 99.5 5.7E-14 1.2E-18 119.1 12.1 101 155-268 70-172 (205)
67 KOG2361 Predicted methyltransf 99.5 4.2E-14 9.2E-19 119.1 10.6 146 107-271 33-185 (264)
68 PLN03075 nicotianamine synthas 99.5 5E-14 1.1E-18 124.3 11.3 106 157-268 123-232 (296)
69 PRK11088 rrmA 23S rRNA methylt 99.5 6E-14 1.3E-18 124.0 10.5 94 157-270 85-182 (272)
70 PRK05134 bifunctional 3-demeth 99.5 2E-13 4.4E-18 117.7 13.0 105 156-270 47-152 (233)
71 PRK07580 Mg-protoporphyrin IX 99.5 1.1E-13 2.3E-18 119.0 11.2 103 156-267 62-164 (230)
72 PRK08287 cobalt-precorrin-6Y C 99.5 1.5E-13 3.4E-18 114.7 11.6 102 155-269 29-131 (187)
73 TIGR03438 probable methyltrans 99.5 2.1E-13 4.5E-18 122.2 12.7 111 157-272 63-180 (301)
74 TIGR00091 tRNA (guanine-N(7)-) 99.5 9.2E-14 2E-18 116.8 9.3 106 157-268 16-131 (194)
75 COG4976 Predicted methyltransf 99.5 4E-15 8.6E-20 124.2 0.7 117 140-274 112-231 (287)
76 TIGR00406 prmA ribosomal prote 99.5 3.6E-13 7.9E-18 119.9 13.2 103 157-271 159-261 (288)
77 TIGR01983 UbiG ubiquinone bios 99.5 3.4E-13 7.5E-18 115.4 12.1 105 157-270 45-150 (224)
78 PF13659 Methyltransf_26: Meth 99.5 8.2E-14 1.8E-18 107.0 7.4 107 158-269 1-115 (117)
79 PRK13256 thiopurine S-methyltr 99.5 6.3E-13 1.4E-17 113.5 13.5 124 140-268 30-162 (226)
80 PRK13942 protein-L-isoaspartat 99.5 3.1E-13 6.6E-18 115.2 11.6 100 155-268 74-175 (212)
81 TIGR00080 pimt protein-L-isoas 99.5 4.2E-13 9.1E-18 114.6 12.1 100 155-268 75-176 (215)
82 PRK14967 putative methyltransf 99.5 5E-13 1.1E-17 114.7 11.3 105 156-268 35-158 (223)
83 COG4123 Predicted O-methyltran 99.5 3.1E-13 6.6E-18 116.1 9.7 107 157-268 44-169 (248)
84 KOG3010 Methyltransferase [Gen 99.4 3.5E-13 7.6E-18 113.6 8.9 120 134-268 16-135 (261)
85 TIGR03533 L3_gln_methyl protei 99.4 1.4E-12 3.1E-17 115.8 13.4 106 157-268 121-250 (284)
86 PF08003 Methyltransf_9: Prote 99.4 4.8E-13 1E-17 117.2 10.1 107 157-271 115-221 (315)
87 PRK00517 prmA ribosomal protei 99.4 8.8E-13 1.9E-17 115.2 11.5 98 156-271 118-215 (250)
88 PRK00377 cbiT cobalt-precorrin 99.4 2E-12 4.3E-17 109.0 11.5 103 155-267 38-143 (198)
89 PRK11805 N5-glutamine S-adenos 99.4 2.7E-12 5.9E-17 115.2 12.9 104 159-268 135-262 (307)
90 PRK04266 fibrillarin; Provisio 99.4 2.1E-12 4.7E-17 110.8 11.4 101 155-268 70-175 (226)
91 PRK00312 pcm protein-L-isoaspa 99.4 3.8E-12 8.2E-17 108.4 11.9 101 155-270 76-176 (212)
92 cd02440 AdoMet_MTases S-adenos 99.4 4.6E-12 9.9E-17 93.3 10.9 102 160-268 1-103 (107)
93 TIGR00536 hemK_fam HemK family 99.4 5.2E-12 1.1E-16 112.3 13.1 104 159-268 116-243 (284)
94 TIGR03534 RF_mod_PrmC protein- 99.4 7.4E-12 1.6E-16 108.9 13.2 105 157-268 87-216 (251)
95 PRK11188 rrmJ 23S rRNA methylt 99.4 4.4E-12 9.5E-17 107.8 10.7 99 156-271 50-167 (209)
96 PRK07402 precorrin-6B methylas 99.4 7.7E-12 1.7E-16 105.2 11.7 104 155-270 38-143 (196)
97 TIGR02081 metW methionine bios 99.4 4.8E-12 1E-16 106.3 10.2 90 157-261 13-104 (194)
98 PRK14121 tRNA (guanine-N(7)-)- 99.4 6.1E-12 1.3E-16 115.0 11.6 106 157-268 122-234 (390)
99 COG2264 PrmA Ribosomal protein 99.3 6E-12 1.3E-16 110.9 10.7 105 156-271 161-265 (300)
100 PF06325 PrmA: Ribosomal prote 99.3 3.7E-12 8E-17 113.0 9.5 112 140-270 149-260 (295)
101 PLN02232 ubiquinone biosynthes 99.3 4E-12 8.8E-17 103.6 9.0 85 184-273 1-85 (160)
102 PF05724 TPMT: Thiopurine S-me 99.3 3.7E-12 7.9E-17 108.7 8.8 121 140-265 24-151 (218)
103 TIGR01177 conserved hypothetic 99.3 8.9E-12 1.9E-16 113.1 11.8 108 155-269 180-294 (329)
104 PRK14968 putative methyltransf 99.3 1.4E-11 2.9E-16 102.4 11.8 107 157-269 23-148 (188)
105 PF00891 Methyltransf_2: O-met 99.3 1.1E-11 2.5E-16 107.4 11.5 104 155-274 98-204 (241)
106 PRK00811 spermidine synthase; 99.3 5.6E-12 1.2E-16 112.0 9.7 112 156-268 75-190 (283)
107 PF03291 Pox_MCEL: mRNA cappin 99.3 1E-11 2.2E-16 112.2 11.3 112 157-268 62-185 (331)
108 PRK14966 unknown domain/N5-glu 99.3 1.7E-11 3.6E-16 112.9 12.7 104 157-267 251-379 (423)
109 PRK04457 spermidine synthase; 99.3 1E-11 2.3E-16 109.0 10.4 107 157-268 66-176 (262)
110 PLN02781 Probable caffeoyl-CoA 99.3 1.1E-11 2.4E-16 107.1 10.1 106 156-272 67-180 (234)
111 PRK09328 N5-glutamine S-adenos 99.3 3.8E-11 8.3E-16 106.0 13.7 106 156-268 107-237 (275)
112 PHA03411 putative methyltransf 99.3 2.5E-11 5.5E-16 105.8 12.1 100 157-268 64-182 (279)
113 PTZ00146 fibrillarin; Provisio 99.3 2.5E-11 5.5E-16 106.9 12.2 115 142-268 117-236 (293)
114 PRK13943 protein-L-isoaspartat 99.3 3.3E-11 7.1E-16 108.5 11.6 102 155-270 78-181 (322)
115 PF05148 Methyltransf_8: Hypot 99.3 1.5E-11 3.2E-16 102.4 7.6 132 109-272 30-161 (219)
116 PF07021 MetW: Methionine bios 99.2 4.5E-11 9.8E-16 98.5 9.8 95 156-268 12-108 (193)
117 smart00650 rADc Ribosomal RNA 99.2 4.7E-11 1E-15 98.1 10.0 102 155-268 11-112 (169)
118 PF01739 CheR: CheR methyltran 99.2 3.7E-11 8E-16 100.8 9.4 117 156-272 30-180 (196)
119 TIGR03704 PrmC_rel_meth putati 99.2 7.5E-11 1.6E-15 103.0 11.6 102 158-268 87-215 (251)
120 KOG1541 Predicted protein carb 99.2 4E-11 8.6E-16 99.9 9.2 100 157-268 50-159 (270)
121 COG2242 CobL Precorrin-6B meth 99.2 6.7E-11 1.5E-15 96.9 10.5 102 155-268 32-134 (187)
122 TIGR00438 rrmJ cell division p 99.2 5.4E-11 1.2E-15 99.4 9.7 97 155-268 30-145 (188)
123 COG2518 Pcm Protein-L-isoaspar 99.2 9.6E-11 2.1E-15 98.0 11.0 101 155-270 70-170 (209)
124 PRK01544 bifunctional N5-gluta 99.2 5.5E-11 1.2E-15 113.6 10.8 104 158-267 139-267 (506)
125 PRK14901 16S rRNA methyltransf 99.2 1E-10 2.2E-15 110.0 12.0 109 155-269 250-384 (434)
126 TIGR00563 rsmB ribosomal RNA s 99.2 1.5E-10 3.2E-15 108.6 12.6 110 155-269 236-368 (426)
127 TIGR00446 nop2p NOL1/NOP2/sun 99.2 1.6E-10 3.5E-15 101.7 11.7 109 155-269 69-199 (264)
128 PRK14904 16S rRNA methyltransf 99.2 1.9E-10 4E-15 108.6 12.4 108 155-269 248-377 (445)
129 PRK10901 16S rRNA methyltransf 99.2 2.1E-10 4.5E-15 107.7 12.6 108 155-269 242-372 (427)
130 PF01135 PCMT: Protein-L-isoas 99.2 6.1E-11 1.3E-15 100.5 7.9 101 155-269 70-172 (209)
131 KOG1975 mRNA cap methyltransfe 99.2 6.5E-11 1.4E-15 103.7 8.0 131 134-268 98-236 (389)
132 PHA03412 putative methyltransf 99.2 1.6E-10 3.4E-15 98.8 10.1 98 158-268 50-161 (241)
133 PLN02366 spermidine synthase 99.2 2.7E-10 5.8E-15 102.1 11.9 110 156-267 90-204 (308)
134 PRK11783 rlmL 23S rRNA m(2)G24 99.2 4.9E-11 1.1E-15 118.2 7.7 110 157-270 538-657 (702)
135 COG2890 HemK Methylase of poly 99.2 2.2E-10 4.7E-15 101.5 10.8 101 160-268 113-237 (280)
136 KOG3045 Predicted RNA methylas 99.2 8.8E-11 1.9E-15 100.0 7.4 130 109-272 138-267 (325)
137 TIGR00417 speE spermidine synt 99.2 1.6E-10 3.4E-15 102.1 9.3 110 157-268 72-185 (270)
138 PLN02476 O-methyltransferase 99.2 2.4E-10 5.3E-15 100.4 10.3 109 156-275 117-233 (278)
139 PF06080 DUF938: Protein of un 99.2 4.7E-10 1E-14 93.7 11.5 111 160-275 28-147 (204)
140 PRK15128 23S rRNA m(5)C1962 me 99.1 1.2E-10 2.6E-15 107.9 8.7 108 157-269 220-339 (396)
141 PRK14903 16S rRNA methyltransf 99.1 3.4E-10 7.4E-15 106.2 11.7 109 155-269 235-366 (431)
142 PRK01581 speE spermidine synth 99.1 3.9E-10 8.4E-15 102.0 11.3 115 156-270 149-269 (374)
143 PRK14902 16S rRNA methyltransf 99.1 4.6E-10 9.9E-15 105.9 12.2 109 155-269 248-379 (444)
144 PRK10611 chemotaxis methyltran 99.1 2.2E-10 4.7E-15 101.4 9.3 116 157-272 115-267 (287)
145 COG4122 Predicted O-methyltran 99.1 3.6E-10 7.7E-15 95.8 10.1 120 138-275 47-171 (219)
146 PF01596 Methyltransf_3: O-met 99.1 3.5E-10 7.5E-15 95.6 8.5 105 157-272 45-157 (205)
147 KOG2940 Predicted methyltransf 99.1 2.2E-10 4.8E-15 96.1 6.2 102 157-268 72-173 (325)
148 PRK10909 rsmD 16S rRNA m(2)G96 99.1 7.2E-10 1.6E-14 93.3 9.1 105 157-270 53-160 (199)
149 PRK03612 spermidine synthase; 99.1 4.9E-10 1.1E-14 107.6 9.0 113 156-268 296-414 (521)
150 KOG1499 Protein arginine N-met 99.0 5.8E-10 1.2E-14 99.3 8.0 103 157-267 60-165 (346)
151 PRK13168 rumA 23S rRNA m(5)U19 99.0 1.1E-09 2.4E-14 103.3 10.4 103 155-270 295-401 (443)
152 PF05219 DREV: DREV methyltran 99.0 1.2E-09 2.5E-14 94.0 9.4 94 157-268 94-187 (265)
153 PLN02672 methionine S-methyltr 99.0 1.4E-09 3.1E-14 110.5 11.7 110 158-267 119-276 (1082)
154 COG2263 Predicted RNA methylas 99.0 6.7E-10 1.4E-14 90.9 7.2 72 157-238 45-116 (198)
155 KOG2899 Predicted methyltransf 99.0 2.3E-09 5E-14 90.7 10.2 109 157-267 58-207 (288)
156 PRK03522 rumB 23S rRNA methylu 99.0 1.4E-09 3.1E-14 98.1 8.8 102 157-270 173-275 (315)
157 PLN02589 caffeoyl-CoA O-methyl 99.0 2.4E-09 5.1E-14 93.0 9.8 118 140-275 69-195 (247)
158 PF02390 Methyltransf_4: Putat 99.0 2E-09 4.3E-14 90.5 8.8 104 160-269 20-133 (195)
159 COG2519 GCD14 tRNA(1-methylade 99.0 4.1E-09 8.9E-14 90.2 10.6 103 155-270 92-196 (256)
160 PF10294 Methyltransf_16: Puta 99.0 1.5E-09 3.3E-14 89.5 6.8 111 155-271 43-158 (173)
161 COG3963 Phospholipid N-methylt 98.9 1.3E-08 2.7E-13 81.6 10.9 117 138-268 32-155 (194)
162 COG1352 CheR Methylase of chem 98.9 8.8E-09 1.9E-13 90.2 10.3 116 157-272 96-246 (268)
163 PF03141 Methyltransf_29: Puta 98.9 1E-09 2.2E-14 101.9 4.2 100 159-270 119-220 (506)
164 PF12147 Methyltransf_20: Puta 98.9 2.2E-08 4.8E-13 87.3 11.9 110 155-269 133-249 (311)
165 KOG2904 Predicted methyltransf 98.9 1.5E-08 3.3E-13 87.2 9.8 107 157-270 148-286 (328)
166 TIGR00095 RNA methyltransferas 98.9 1.2E-08 2.6E-13 85.4 9.0 104 157-268 49-158 (189)
167 PF05185 PRMT5: PRMT5 arginine 98.9 6.9E-09 1.5E-13 97.5 8.3 102 158-266 187-294 (448)
168 TIGR00479 rumA 23S rRNA (uraci 98.8 1.3E-08 2.9E-13 95.7 9.6 103 155-269 290-396 (431)
169 TIGR02085 meth_trns_rumB 23S r 98.8 1.6E-08 3.5E-13 93.3 9.7 102 157-270 233-335 (374)
170 PRK00274 ksgA 16S ribosomal RN 98.8 2E-08 4.3E-13 88.8 9.0 75 155-239 40-114 (272)
171 PRK14896 ksgA 16S ribosomal RN 98.8 7.7E-08 1.7E-12 84.4 12.6 76 155-241 27-102 (258)
172 COG0220 Predicted S-adenosylme 98.8 1.8E-08 3.9E-13 86.3 8.3 104 159-268 50-163 (227)
173 KOG1500 Protein arginine N-met 98.8 3E-08 6.4E-13 87.6 9.3 103 157-267 177-280 (517)
174 TIGR00478 tly hemolysin TlyA f 98.8 2.7E-08 5.8E-13 85.4 8.5 94 157-267 75-169 (228)
175 COG1092 Predicted SAM-dependen 98.8 3.5E-08 7.5E-13 90.7 9.5 111 157-271 217-338 (393)
176 PRK04148 hypothetical protein; 98.8 1E-07 2.2E-12 74.6 10.7 87 157-262 16-104 (134)
177 PRK11727 23S rRNA mA1618 methy 98.8 3.6E-08 7.7E-13 88.7 9.3 80 157-241 114-200 (321)
178 PF09243 Rsm22: Mitochondrial 98.8 4.8E-08 1E-12 86.4 9.7 114 156-277 32-147 (274)
179 PF08704 GCD14: tRNA methyltra 98.7 4.4E-08 9.6E-13 84.9 8.8 105 155-271 38-148 (247)
180 PLN02823 spermine synthase 98.7 4.9E-08 1.1E-12 88.5 9.4 109 157-268 103-219 (336)
181 TIGR00755 ksgA dimethyladenosi 98.7 1.2E-07 2.5E-12 83.1 11.4 75 155-240 27-104 (253)
182 KOG1269 SAM-dependent methyltr 98.7 1.4E-08 3E-13 92.7 4.6 114 155-275 108-221 (364)
183 PF10672 Methyltrans_SAM: S-ad 98.7 4.6E-08 1E-12 86.5 6.5 110 157-270 123-239 (286)
184 PTZ00338 dimethyladenosine tra 98.6 1.1E-07 2.4E-12 84.8 8.7 78 155-240 34-111 (294)
185 PF01170 UPF0020: Putative RNA 98.6 1.9E-07 4.1E-12 77.4 9.3 111 155-270 26-152 (179)
186 KOG3420 Predicted RNA methylas 98.6 3.3E-08 7.1E-13 77.4 4.3 78 156-240 47-124 (185)
187 COG0421 SpeE Spermidine syntha 98.6 1.8E-07 3.8E-12 82.7 9.1 109 157-268 76-189 (282)
188 PF03602 Cons_hypoth95: Conser 98.6 4E-08 8.6E-13 81.7 4.6 104 157-268 42-152 (183)
189 PRK00536 speE spermidine synth 98.6 1.6E-07 3.5E-12 82.0 8.2 101 155-268 70-170 (262)
190 COG1041 Predicted DNA modifica 98.6 3.5E-07 7.6E-12 82.1 10.1 109 155-270 195-311 (347)
191 COG2521 Predicted archaeal met 98.6 1.2E-07 2.6E-12 80.0 6.3 110 155-268 132-244 (287)
192 PRK04338 N(2),N(2)-dimethylgua 98.6 1.6E-07 3.4E-12 86.8 7.8 99 158-268 58-157 (382)
193 PF01564 Spermine_synth: Sperm 98.6 9E-08 2E-12 83.3 5.3 112 156-269 75-191 (246)
194 PF02475 Met_10: Met-10+ like- 98.5 1.8E-07 3.9E-12 78.7 6.5 99 156-266 100-199 (200)
195 PF02527 GidB: rRNA small subu 98.5 6.6E-07 1.4E-11 74.4 9.6 96 160-268 51-147 (184)
196 TIGR02143 trmA_only tRNA (urac 98.5 3.1E-07 6.7E-12 84.2 8.3 98 159-270 199-312 (353)
197 PRK05031 tRNA (uracil-5-)-meth 98.5 2.9E-07 6.4E-12 84.6 8.2 97 159-269 208-320 (362)
198 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.5 1.4E-07 3E-12 82.1 4.8 117 156-272 55-202 (256)
199 PRK01544 bifunctional N5-gluta 98.5 5.1E-07 1.1E-11 86.5 8.8 107 157-269 347-462 (506)
200 PRK11933 yebU rRNA (cytosine-C 98.5 1.1E-06 2.3E-11 83.2 10.7 108 155-268 111-241 (470)
201 PF07942 N2227: N2227-like pro 98.5 7.7E-07 1.7E-11 77.9 8.9 109 156-267 55-200 (270)
202 TIGR03439 methyl_EasF probable 98.4 6.4E-06 1.4E-10 74.2 14.6 108 157-268 76-196 (319)
203 COG0500 SmtA SAM-dependent met 98.4 4.5E-06 9.8E-11 64.9 12.0 101 161-272 52-158 (257)
204 COG2520 Predicted methyltransf 98.4 1.1E-06 2.3E-11 79.4 8.1 109 156-275 187-295 (341)
205 KOG1663 O-methyltransferase [S 98.4 5.2E-06 1.1E-10 70.2 11.5 114 140-271 63-184 (237)
206 COG0357 GidB Predicted S-adeno 98.4 4.2E-06 9.2E-11 70.9 10.8 97 158-266 68-165 (215)
207 KOG1661 Protein-L-isoaspartate 98.4 1.7E-06 3.8E-11 72.0 7.8 105 156-268 81-192 (237)
208 KOG3191 Predicted N6-DNA-methy 98.3 2.5E-06 5.4E-11 69.5 8.4 103 158-268 44-167 (209)
209 COG0742 N6-adenine-specific me 98.3 3.2E-06 6.8E-11 69.9 8.7 106 157-268 43-153 (187)
210 TIGR00308 TRM1 tRNA(guanine-26 98.3 1.8E-06 4E-11 79.4 7.0 99 158-268 45-146 (374)
211 COG4076 Predicted RNA methylas 98.2 3.5E-06 7.7E-11 69.0 6.1 100 159-267 34-133 (252)
212 PRK00050 16S rRNA m(4)C1402 me 98.2 3.8E-06 8.3E-11 74.8 6.9 75 155-237 17-97 (296)
213 PRK11783 rlmL 23S rRNA m(2)G24 98.1 1E-05 2.3E-10 80.5 9.8 107 157-268 190-346 (702)
214 KOG1331 Predicted methyltransf 98.1 2.6E-06 5.6E-11 74.2 4.7 97 157-268 45-142 (293)
215 COG0030 KsgA Dimethyladenosine 98.1 8.8E-06 1.9E-10 70.8 7.5 76 155-239 28-104 (259)
216 COG2265 TrmA SAM-dependent met 98.1 1.3E-05 2.8E-10 75.2 8.8 104 155-270 291-397 (432)
217 TIGR02987 met_A_Alw26 type II 98.1 2.2E-05 4.8E-10 75.8 10.3 75 157-237 31-119 (524)
218 KOG0820 Ribosomal RNA adenine 98.1 1.7E-05 3.8E-10 68.6 8.4 75 155-237 56-130 (315)
219 PF09445 Methyltransf_15: RNA 98.1 2.1E-06 4.6E-11 69.7 2.7 72 160-237 2-76 (163)
220 PF01728 FtsJ: FtsJ-like methy 98.1 1.1E-06 2.3E-11 72.9 0.8 97 157-270 23-140 (181)
221 PF02384 N6_Mtase: N-6 DNA Met 98.1 1.5E-05 3.2E-10 71.7 8.3 110 155-268 44-182 (311)
222 COG3897 Predicted methyltransf 98.0 2.7E-05 5.9E-10 64.3 8.6 100 155-267 77-176 (218)
223 KOG2352 Predicted spermine/spe 98.0 3.1E-05 6.8E-10 72.2 9.8 105 159-270 50-162 (482)
224 KOG3987 Uncharacterized conser 98.0 3E-06 6.5E-11 70.4 2.7 113 137-268 93-206 (288)
225 PF00398 RrnaAD: Ribosomal RNA 98.0 5.7E-05 1.2E-09 66.4 9.9 100 155-268 28-133 (262)
226 PF13679 Methyltransf_32: Meth 97.9 4.1E-05 8.9E-10 60.9 7.5 105 156-271 24-133 (141)
227 KOG1709 Guanidinoacetate methy 97.9 6.4E-05 1.4E-09 63.0 8.7 104 156-268 100-205 (271)
228 PF08123 DOT1: Histone methyla 97.9 3.1E-05 6.6E-10 65.5 7.0 117 155-274 40-163 (205)
229 COG0144 Sun tRNA and rRNA cyto 97.9 0.00019 4.1E-09 65.9 12.6 108 155-268 154-287 (355)
230 PF11968 DUF3321: Putative met 97.9 4.8E-05 1E-09 64.1 7.9 108 138-268 31-148 (219)
231 PF05958 tRNA_U5-meth_tr: tRNA 97.9 2E-05 4.4E-10 72.2 5.8 58 160-224 199-256 (352)
232 PF04672 Methyltransf_19: S-ad 97.9 8.3E-05 1.8E-09 64.9 9.0 123 138-271 52-192 (267)
233 COG0293 FtsJ 23S rRNA methylas 97.9 6.9E-05 1.5E-09 62.9 8.2 99 155-270 43-160 (205)
234 COG0116 Predicted N6-adenine-s 97.9 0.00018 4E-09 65.6 11.5 108 157-269 191-344 (381)
235 COG4262 Predicted spermidine s 97.8 7.1E-05 1.5E-09 67.4 8.3 109 157-268 289-406 (508)
236 KOG2730 Methylase [General fun 97.8 2.5E-05 5.4E-10 65.6 5.1 75 157-237 94-172 (263)
237 TIGR01444 fkbM_fam methyltrans 97.8 6.8E-05 1.5E-09 59.3 6.3 58 160-223 1-59 (143)
238 COG5459 Predicted rRNA methyla 97.7 2.3E-05 5E-10 70.1 3.6 119 157-278 113-234 (484)
239 PF04816 DUF633: Family of unk 97.7 0.00016 3.5E-09 61.1 8.0 106 161-272 1-125 (205)
240 PRK11760 putative 23S rRNA C24 97.7 0.00014 3E-09 65.6 7.8 88 155-262 209-296 (357)
241 PF03059 NAS: Nicotianamine sy 97.7 0.00011 2.3E-09 64.7 6.4 106 157-268 120-229 (276)
242 PF01269 Fibrillarin: Fibrilla 97.6 0.00063 1.4E-08 57.7 10.6 115 142-268 58-177 (229)
243 KOG2187 tRNA uracil-5-methyltr 97.6 0.00011 2.5E-09 68.8 5.4 118 140-271 369-492 (534)
244 PF13578 Methyltransf_24: Meth 97.5 2.4E-05 5.2E-10 58.8 0.4 99 162-269 1-105 (106)
245 COG1189 Predicted rRNA methyla 97.5 0.00037 8E-09 59.5 7.3 97 156-267 78-176 (245)
246 PF03141 Methyltransf_29: Puta 97.5 7.1E-05 1.5E-09 70.1 3.3 101 158-271 366-469 (506)
247 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.5 0.00043 9.2E-09 61.6 8.0 108 155-268 83-218 (283)
248 KOG2915 tRNA(1-methyladenosine 97.4 0.0013 2.7E-08 57.3 9.7 101 155-267 103-208 (314)
249 KOG3201 Uncharacterized conser 97.4 0.00021 4.6E-09 57.3 3.8 129 134-270 9-141 (201)
250 COG4627 Uncharacterized protei 97.3 6.5E-05 1.4E-09 59.8 0.8 47 222-268 39-85 (185)
251 COG4798 Predicted methyltransf 97.3 0.00047 1E-08 57.0 5.8 110 155-275 46-172 (238)
252 KOG2798 Putative trehalase [Ca 97.3 0.0011 2.3E-08 58.8 8.0 109 157-268 150-295 (369)
253 PF05971 Methyltransf_10: Prot 97.2 0.0018 3.9E-08 57.7 8.5 96 140-242 87-189 (299)
254 KOG4589 Cell division protein 97.1 0.0026 5.7E-08 52.4 8.2 102 155-273 67-188 (232)
255 PF06962 rRNA_methylase: Putat 97.1 0.0012 2.5E-08 52.2 5.7 84 182-272 1-95 (140)
256 COG1889 NOP1 Fibrillarin-like 97.0 0.011 2.4E-07 49.4 10.9 116 141-268 60-179 (231)
257 KOG2539 Mitochondrial/chloropl 97.0 0.0028 6.2E-08 59.0 7.8 121 156-279 199-325 (491)
258 KOG2793 Putative N2,N2-dimethy 97.0 0.0043 9.2E-08 53.8 8.2 110 157-269 86-199 (248)
259 PF07091 FmrO: Ribosomal RNA m 96.9 0.0022 4.9E-08 55.3 6.4 82 155-244 103-185 (251)
260 KOG3115 Methyltransferase-like 96.9 0.0017 3.7E-08 54.2 5.3 111 158-270 61-184 (249)
261 PHA01634 hypothetical protein 96.9 0.0033 7.1E-08 48.6 6.5 47 157-203 28-74 (156)
262 TIGR00006 S-adenosyl-methyltra 96.9 0.0039 8.5E-08 55.8 7.5 76 155-237 18-99 (305)
263 cd00315 Cyt_C5_DNA_methylase C 96.8 0.0091 2E-07 52.9 9.7 98 160-272 2-113 (275)
264 KOG1562 Spermidine synthase [A 96.7 0.0034 7.3E-08 55.3 5.6 113 155-269 119-236 (337)
265 KOG1501 Arginine N-methyltrans 96.6 0.0038 8.2E-08 57.7 5.5 75 159-238 68-143 (636)
266 COG2384 Predicted SAM-dependen 96.6 0.017 3.8E-07 48.8 8.8 77 158-239 17-94 (226)
267 KOG1122 tRNA and rRNA cytosine 96.5 0.014 3.1E-07 53.8 8.2 107 155-268 239-370 (460)
268 PRK10742 putative methyltransf 96.4 0.0059 1.3E-07 52.9 5.5 109 160-271 91-221 (250)
269 PF02636 Methyltransf_28: Puta 96.3 0.017 3.8E-07 50.3 7.7 46 157-202 18-72 (252)
270 KOG0822 Protein kinase inhibit 96.2 0.018 3.9E-07 54.5 7.7 121 142-269 352-478 (649)
271 KOG2920 Predicted methyltransf 96.0 0.0032 7E-08 55.2 1.8 111 156-268 115-233 (282)
272 PF02005 TRM: N2,N2-dimethylgu 96.0 0.011 2.5E-07 54.6 5.5 102 157-269 49-154 (377)
273 PF03492 Methyltransf_7: SAM d 96.0 0.019 4.1E-07 52.3 6.8 114 155-269 14-183 (334)
274 KOG4058 Uncharacterized conser 95.9 0.053 1.1E-06 43.1 7.9 101 155-267 70-170 (199)
275 COG4301 Uncharacterized conser 95.9 0.081 1.8E-06 45.7 9.5 111 157-272 78-197 (321)
276 PLN02668 indole-3-acetate carb 95.8 0.036 7.9E-07 51.2 7.9 44 226-269 158-237 (386)
277 COG1064 AdhP Zn-dependent alco 95.8 0.06 1.3E-06 48.9 8.7 97 154-271 163-261 (339)
278 PF06859 Bin3: Bicoid-interact 95.7 0.005 1.1E-07 46.4 1.4 39 230-268 1-43 (110)
279 COG0275 Predicted S-adenosylme 95.7 0.055 1.2E-06 48.0 8.1 74 155-235 21-101 (314)
280 PF07757 AdoMet_MTase: Predict 95.6 0.031 6.8E-07 41.9 5.2 46 139-188 43-88 (112)
281 KOG1596 Fibrillarin and relate 95.5 0.11 2.5E-06 44.6 9.0 120 142-273 141-267 (317)
282 PF01861 DUF43: Protein of unk 95.5 0.13 2.8E-06 44.4 9.3 98 157-267 44-147 (243)
283 KOG1099 SAM-dependent methyltr 95.4 0.026 5.6E-07 48.1 4.7 92 159-267 43-161 (294)
284 PF01795 Methyltransf_5: MraW 95.4 0.036 7.9E-07 49.7 6.0 75 155-236 18-99 (310)
285 COG0270 Dcm Site-specific DNA 95.0 0.11 2.3E-06 47.3 8.0 102 158-272 3-118 (328)
286 PF03269 DUF268: Caenorhabditi 95.0 0.11 2.5E-06 41.9 6.9 104 158-274 2-116 (177)
287 PF11312 DUF3115: Protein of u 94.6 0.11 2.3E-06 46.6 6.6 115 158-272 87-245 (315)
288 cd08283 FDH_like_1 Glutathione 94.6 0.14 3E-06 47.4 7.7 105 155-269 182-306 (386)
289 COG1565 Uncharacterized conser 94.5 0.091 2E-06 47.8 5.9 47 156-202 76-131 (370)
290 COG3129 Predicted SAM-dependen 94.4 0.13 2.7E-06 44.1 6.3 95 141-242 63-165 (292)
291 TIGR00675 dcm DNA-methyltransf 94.4 0.13 2.8E-06 46.5 6.8 97 161-272 1-110 (315)
292 PF11899 DUF3419: Protein of u 94.3 0.055 1.2E-06 50.1 4.3 57 212-268 275-333 (380)
293 PF11599 AviRa: RRNA methyltra 94.3 0.19 4E-06 42.6 6.9 115 155-269 49-214 (246)
294 PRK09424 pntA NAD(P) transhydr 94.1 0.46 1E-05 45.7 10.1 104 155-268 162-284 (509)
295 PTZ00357 methyltransferase; Pr 94.1 0.23 4.9E-06 48.9 7.9 105 159-264 702-830 (1072)
296 PF00145 DNA_methylase: C-5 cy 94.0 0.08 1.7E-06 47.4 4.7 97 160-272 2-112 (335)
297 COG0286 HsdM Type I restrictio 93.9 0.67 1.4E-05 44.5 10.9 109 155-268 184-325 (489)
298 TIGR00027 mthyl_TIGR00027 meth 93.8 0.92 2E-05 39.8 10.9 120 140-268 68-196 (260)
299 KOG2198 tRNA cytosine-5-methyl 93.8 0.61 1.3E-05 42.6 9.8 108 155-268 153-295 (375)
300 COG1867 TRM1 N2,N2-dimethylgua 93.7 0.17 3.6E-06 46.2 6.1 100 158-269 53-154 (380)
301 PRK10458 DNA cytosine methylas 93.6 0.66 1.4E-05 44.2 10.3 45 157-201 87-131 (467)
302 KOG0024 Sorbitol dehydrogenase 93.3 0.25 5.5E-06 44.4 6.3 102 155-273 167-277 (354)
303 KOG1227 Putative methyltransfe 93.3 0.068 1.5E-06 47.3 2.8 106 157-274 194-302 (351)
304 COG1063 Tdh Threonine dehydrog 93.1 0.7 1.5E-05 42.3 9.4 97 158-271 169-271 (350)
305 PF04989 CmcI: Cephalosporin h 93.1 0.19 4.1E-06 42.4 5.0 105 157-271 32-149 (206)
306 PF04445 SAM_MT: Putative SAM- 93.1 0.088 1.9E-06 45.3 3.1 82 159-241 77-162 (234)
307 PRK11524 putative methyltransf 92.8 0.41 8.9E-06 42.5 7.2 58 139-202 195-252 (284)
308 COG1255 Uncharacterized protei 92.7 0.78 1.7E-05 34.9 7.4 85 158-265 14-100 (129)
309 PF05711 TylF: Macrocin-O-meth 92.5 0.65 1.4E-05 40.4 7.7 122 140-272 60-215 (248)
310 KOG1253 tRNA methyltransferase 92.4 0.11 2.5E-06 48.9 3.1 102 156-268 108-215 (525)
311 PRK09880 L-idonate 5-dehydroge 92.3 0.59 1.3E-05 42.3 7.8 96 157-269 169-266 (343)
312 PF01555 N6_N4_Mtase: DNA meth 92.3 0.37 8.1E-06 40.5 6.1 55 138-198 177-231 (231)
313 cd08254 hydroxyacyl_CoA_DH 6-h 92.1 1.5 3.4E-05 39.0 10.2 93 155-268 163-262 (338)
314 KOG2078 tRNA modification enzy 91.9 0.075 1.6E-06 49.2 1.3 65 155-224 247-311 (495)
315 PF00107 ADH_zinc_N: Zinc-bind 91.4 0.7 1.5E-05 35.3 6.2 86 167-272 1-92 (130)
316 PRK13699 putative methylase; P 91.0 0.92 2E-05 39.0 7.1 58 139-202 150-207 (227)
317 PF10354 DUF2431: Domain of un 91.0 1.2 2.5E-05 36.4 7.3 97 164-268 3-124 (166)
318 KOG2651 rRNA adenine N-6-methy 91.0 0.56 1.2E-05 43.1 5.8 43 156-198 152-194 (476)
319 TIGR02822 adh_fam_2 zinc-bindi 90.9 2.9 6.2E-05 37.7 10.7 92 155-270 163-255 (329)
320 cd05188 MDR Medium chain reduc 90.6 2.4 5.2E-05 36.2 9.5 98 156-270 133-233 (271)
321 cd08230 glucose_DH Glucose deh 89.9 1.6 3.5E-05 39.6 8.2 96 156-270 171-270 (355)
322 PRK01747 mnmC bifunctional tRN 89.7 0.97 2.1E-05 45.1 7.0 110 157-267 57-204 (662)
323 PRK11524 putative methyltransf 89.7 0.25 5.4E-06 43.9 2.5 56 213-268 8-79 (284)
324 PF02254 TrkA_N: TrkA-N domain 89.6 2.5 5.5E-05 31.5 7.8 85 166-268 4-95 (116)
325 cd08232 idonate-5-DH L-idonate 89.6 1.6 3.4E-05 39.2 7.8 95 157-268 165-261 (339)
326 PF07279 DUF1442: Protein of u 88.3 7.4 0.00016 33.1 10.2 118 137-273 28-152 (218)
327 cd08237 ribitol-5-phosphate_DH 87.8 3.2 7E-05 37.6 8.6 92 156-269 162-256 (341)
328 COG0686 Ald Alanine dehydrogen 87.2 1.4 3E-05 39.6 5.4 99 157-267 167-266 (371)
329 KOG0821 Predicted ribosomal RN 86.5 0.68 1.5E-05 39.5 3.0 60 158-224 51-110 (326)
330 TIGR00561 pntA NAD(P) transhyd 86.5 2 4.4E-05 41.4 6.6 97 156-267 162-282 (511)
331 COG3510 CmcI Cephalosporin hyd 85.9 1.7 3.8E-05 36.2 5.1 102 157-272 69-183 (237)
332 PLN03154 putative allyl alcoho 85.9 3.6 7.8E-05 37.4 7.8 98 155-269 156-258 (348)
333 PRK13699 putative methylase; P 85.8 0.86 1.9E-05 39.2 3.4 53 215-267 3-70 (227)
334 cd00401 AdoHcyase S-adenosyl-L 85.5 2.7 5.8E-05 39.5 6.8 87 156-268 200-288 (413)
335 cd08255 2-desacetyl-2-hydroxye 85.5 7.5 0.00016 33.6 9.4 93 155-268 95-189 (277)
336 PF04072 LCM: Leucine carboxyl 85.3 2.8 6.2E-05 34.5 6.2 94 159-256 80-183 (183)
337 TIGR03451 mycoS_dep_FDH mycoth 84.5 8.9 0.00019 34.8 9.8 97 155-269 174-276 (358)
338 cd08245 CAD Cinnamyl alcohol d 84.5 8.8 0.00019 34.1 9.6 96 155-269 160-256 (330)
339 cd08234 threonine_DH_like L-th 84.2 9.7 0.00021 33.9 9.8 95 155-269 157-257 (334)
340 PF03514 GRAS: GRAS domain fam 84.2 6.7 0.00015 36.3 8.8 113 156-272 109-247 (374)
341 PF05206 TRM13: Methyltransfer 84.2 4.4 9.6E-05 35.6 7.2 35 156-190 17-57 (259)
342 KOG2352 Predicted spermine/spe 83.3 1.7 3.7E-05 41.2 4.4 105 157-268 295-415 (482)
343 TIGR02825 B4_12hDH leukotriene 83.3 15 0.00032 32.7 10.5 96 155-268 136-236 (325)
344 TIGR00518 alaDH alanine dehydr 82.7 1.8 3.9E-05 40.1 4.3 99 157-267 166-265 (370)
345 PRK07533 enoyl-(acyl carrier p 82.4 7.8 0.00017 33.4 8.1 104 157-269 9-148 (258)
346 TIGR03201 dearomat_had 6-hydro 82.4 14 0.00029 33.5 10.0 45 155-199 164-209 (349)
347 PRK15001 SAM-dependent 23S rib 82.3 21 0.00046 33.2 11.2 116 137-272 30-145 (378)
348 cd08293 PTGR2 Prostaglandin re 81.8 5.3 0.00012 35.8 7.1 93 159-268 156-253 (345)
349 COG0604 Qor NADPH:quinone redu 81.6 6.2 0.00013 35.8 7.4 100 155-272 140-244 (326)
350 cd08281 liver_ADH_like1 Zinc-d 81.0 14 0.0003 33.8 9.6 99 155-270 189-291 (371)
351 COG2933 Predicted SAM-dependen 80.6 4 8.7E-05 35.9 5.4 34 155-189 209-242 (358)
352 PRK05708 2-dehydropantoate 2-r 79.9 20 0.00043 32.1 10.0 101 159-270 3-105 (305)
353 COG3315 O-Methyltransferase in 79.9 14 0.0003 33.1 8.9 106 158-269 93-209 (297)
354 COG4017 Uncharacterized protei 79.8 2.2 4.8E-05 35.6 3.4 72 156-246 43-115 (254)
355 cd05278 FDH_like Formaldehyde 79.6 21 0.00045 31.9 10.2 96 155-268 165-266 (347)
356 PRK07417 arogenate dehydrogena 79.5 12 0.00025 33.1 8.3 84 160-265 2-87 (279)
357 cd08295 double_bond_reductase_ 79.4 10 0.00022 34.1 8.0 97 155-268 149-250 (338)
358 PRK05872 short chain dehydroge 78.7 19 0.00042 31.7 9.5 74 157-239 8-94 (296)
359 PRK07502 cyclohexadienyl dehyd 78.2 12 0.00025 33.5 8.0 89 159-267 7-98 (307)
360 PRK05786 fabG 3-ketoacyl-(acyl 78.0 18 0.00039 30.3 8.8 104 158-270 5-136 (238)
361 KOG3924 Putative protein methy 77.9 4.5 9.8E-05 37.4 5.1 115 155-273 190-312 (419)
362 PF03686 UPF0146: Uncharacteri 77.6 4.8 0.0001 31.2 4.5 79 158-259 14-94 (127)
363 PRK08265 short chain dehydroge 77.5 23 0.0005 30.4 9.5 70 158-238 6-88 (261)
364 COG5379 BtaA S-adenosylmethion 77.4 3.9 8.4E-05 36.5 4.4 74 186-270 292-367 (414)
365 cd08294 leukotriene_B4_DH_like 77.1 31 0.00068 30.4 10.5 96 155-268 141-240 (329)
366 cd08261 Zn_ADH7 Alcohol dehydr 77.1 27 0.00058 31.1 10.1 97 155-269 157-258 (337)
367 TIGR03366 HpnZ_proposed putati 77.0 7 0.00015 34.2 6.1 98 156-271 119-220 (280)
368 cd08239 THR_DH_like L-threonin 76.0 27 0.00058 31.2 9.8 97 155-269 161-262 (339)
369 PF05050 Methyltransf_21: Meth 75.4 5.5 0.00012 31.4 4.6 37 163-199 1-42 (167)
370 cd05285 sorbitol_DH Sorbitol d 75.4 30 0.00066 31.0 10.0 96 155-268 160-264 (343)
371 COG1568 Predicted methyltransf 75.3 13 0.00029 32.9 7.1 102 157-268 152-259 (354)
372 TIGR01202 bchC 2-desacetyl-2-h 75.1 16 0.00034 32.6 7.9 86 157-269 144-231 (308)
373 PRK08085 gluconate 5-dehydroge 74.8 30 0.00065 29.4 9.4 73 158-238 9-94 (254)
374 PF02153 PDH: Prephenate dehyd 74.5 7 0.00015 34.1 5.4 74 172-266 2-76 (258)
375 PRK08277 D-mannonate oxidoredu 73.7 22 0.00048 30.7 8.5 72 158-237 10-94 (278)
376 PRK09496 trkA potassium transp 73.2 20 0.00042 33.7 8.5 88 157-262 230-324 (453)
377 PRK07984 enoyl-(acyl carrier p 73.2 35 0.00075 29.6 9.5 73 158-239 6-93 (262)
378 PRK03659 glutathione-regulated 72.9 14 0.0003 36.5 7.6 89 159-268 401-497 (601)
379 TIGR00872 gnd_rel 6-phosphoglu 71.8 11 0.00025 33.5 6.2 87 160-266 2-90 (298)
380 PLN02740 Alcohol dehydrogenase 71.7 37 0.00079 31.2 9.8 98 155-269 196-300 (381)
381 PRK07066 3-hydroxybutyryl-CoA 71.7 15 0.00032 33.4 6.9 99 159-265 8-115 (321)
382 cd08285 NADP_ADH NADP(H)-depen 71.5 46 0.001 29.9 10.3 97 155-269 164-266 (351)
383 cd08238 sorbose_phosphate_red 71.2 48 0.001 30.8 10.5 101 155-267 173-286 (410)
384 TIGR02818 adh_III_F_hyde S-(hy 70.0 46 0.001 30.3 10.0 99 155-270 183-288 (368)
385 PRK06079 enoyl-(acyl carrier p 69.9 48 0.001 28.3 9.6 102 158-270 7-144 (252)
386 PRK07806 short chain dehydroge 69.9 25 0.00054 29.7 7.7 103 158-268 6-133 (248)
387 PRK06035 3-hydroxyacyl-CoA deh 69.9 15 0.00033 32.5 6.5 99 159-266 4-118 (291)
388 COG0541 Ffh Signal recognition 69.5 11 0.00025 35.4 5.7 112 156-276 98-228 (451)
389 cd08236 sugar_DH NAD(P)-depend 69.4 16 0.00035 32.6 6.7 97 155-269 157-258 (343)
390 PRK07985 oxidoreductase; Provi 69.2 37 0.00079 29.9 8.9 104 158-269 49-185 (294)
391 PRK12921 2-dehydropantoate 2-r 68.7 31 0.00068 30.4 8.4 99 160-270 2-103 (305)
392 PRK06522 2-dehydropantoate 2-r 68.4 45 0.00098 29.3 9.3 98 160-270 2-101 (304)
393 KOG1201 Hydroxysteroid 17-beta 68.1 27 0.00059 31.2 7.5 85 157-250 37-140 (300)
394 PRK10669 putative cation:proto 67.3 26 0.00055 34.3 8.0 90 159-268 418-514 (558)
395 PF11899 DUF3419: Protein of u 66.8 12 0.00025 34.8 5.3 46 155-201 33-78 (380)
396 PRK10309 galactitol-1-phosphat 66.5 49 0.0011 29.7 9.3 98 155-270 158-261 (347)
397 cd01842 SGNH_hydrolase_like_5 66.4 13 0.00027 30.8 4.7 42 227-268 47-98 (183)
398 cd08242 MDR_like Medium chain 66.2 78 0.0017 27.8 10.5 91 155-270 153-246 (319)
399 PRK08324 short chain dehydroge 66.1 32 0.00068 34.6 8.6 104 157-269 421-557 (681)
400 COG5379 BtaA S-adenosylmethion 66.0 12 0.00025 33.6 4.7 46 155-201 61-106 (414)
401 PRK09260 3-hydroxybutyryl-CoA 65.5 18 0.0004 31.9 6.1 100 160-267 3-115 (288)
402 PRK03562 glutathione-regulated 65.5 26 0.00055 34.9 7.7 91 159-268 401-497 (621)
403 PRK06701 short chain dehydroge 65.4 28 0.00061 30.6 7.3 105 158-270 46-182 (290)
404 COG1893 ApbA Ketopantoate redu 64.0 42 0.0009 30.2 8.2 99 160-270 2-102 (307)
405 PRK08507 prephenate dehydrogen 64.0 32 0.00068 30.1 7.3 84 160-266 2-88 (275)
406 PRK06505 enoyl-(acyl carrier p 64.0 60 0.0013 28.2 9.1 103 158-269 7-145 (271)
407 PF06690 DUF1188: Protein of u 63.7 19 0.00042 31.0 5.5 70 159-247 43-113 (252)
408 PF01210 NAD_Gly3P_dh_N: NAD-d 63.4 30 0.00064 27.6 6.5 98 160-267 1-101 (157)
409 COG1748 LYS9 Saccharopine dehy 62.8 20 0.00042 33.5 5.9 70 159-238 2-76 (389)
410 PRK12937 short chain dehydroge 62.5 63 0.0014 27.0 8.8 104 158-269 5-139 (245)
411 PRK12744 short chain dehydroge 62.3 72 0.0016 27.1 9.2 102 158-267 8-143 (257)
412 KOG2918 Carboxymethyl transfer 62.2 84 0.0018 28.4 9.4 118 156-274 86-231 (335)
413 TIGR00692 tdh L-threonine 3-de 62.1 96 0.0021 27.6 10.3 95 156-268 160-260 (340)
414 PLN02586 probable cinnamyl alc 62.1 30 0.00064 31.6 7.0 95 156-269 182-278 (360)
415 PRK06484 short chain dehydroge 61.7 67 0.0015 30.7 9.7 103 157-270 268-401 (520)
416 cd01065 NAD_bind_Shikimate_DH 61.3 28 0.0006 27.2 5.9 44 157-200 18-63 (155)
417 PRK06139 short chain dehydroge 61.1 26 0.00056 31.7 6.4 73 158-238 7-92 (330)
418 PLN02688 pyrroline-5-carboxyla 60.9 36 0.00078 29.5 7.1 85 160-266 2-92 (266)
419 PLN02827 Alcohol dehydrogenase 60.0 58 0.0012 29.9 8.6 97 155-268 191-294 (378)
420 cd08241 QOR1 Quinone oxidoredu 59.8 31 0.00068 29.9 6.6 95 155-268 137-237 (323)
421 PRK14620 NAD(P)H-dependent gly 59.3 71 0.0015 28.6 8.9 100 160-268 2-105 (326)
422 PRK06249 2-dehydropantoate 2-r 59.1 39 0.00085 30.2 7.1 101 158-270 5-107 (313)
423 PTZ00082 L-lactate dehydrogena 58.8 67 0.0015 29.0 8.6 99 159-270 7-129 (321)
424 PRK07680 late competence prote 58.8 34 0.00074 29.9 6.6 88 160-267 2-94 (273)
425 cd08263 Zn_ADH10 Alcohol dehyd 58.5 1.3E+02 0.0028 27.2 10.7 94 156-269 186-287 (367)
426 PRK06484 short chain dehydroge 58.5 72 0.0016 30.5 9.3 72 157-239 4-88 (520)
427 TIGR02354 thiF_fam2 thiamine b 58.5 22 0.00048 29.8 5.1 32 158-189 21-54 (200)
428 PRK15057 UDP-glucose 6-dehydro 58.3 87 0.0019 29.2 9.4 40 160-200 2-42 (388)
429 PRK09496 trkA potassium transp 58.3 79 0.0017 29.6 9.4 89 160-267 2-97 (453)
430 PF02558 ApbA: Ketopantoate re 58.2 21 0.00045 27.9 4.7 38 228-270 65-102 (151)
431 cd08231 MDR_TM0436_like Hypoth 58.1 1.1E+02 0.0024 27.5 10.1 95 157-269 177-280 (361)
432 TIGR02356 adenyl_thiF thiazole 58.1 13 0.00028 31.2 3.6 32 158-189 21-54 (202)
433 PF01488 Shikimate_DH: Shikima 58.0 15 0.00032 28.6 3.7 75 157-242 11-87 (135)
434 PTZ00117 malate dehydrogenase; 57.7 79 0.0017 28.5 8.9 104 158-270 5-123 (319)
435 PRK06500 short chain dehydroge 57.6 86 0.0019 26.2 8.8 69 158-237 6-87 (249)
436 PRK00094 gpsA NAD(P)H-dependen 57.6 73 0.0016 28.3 8.7 100 160-269 3-105 (325)
437 PF10237 N6-adenineMlase: Prob 57.2 1E+02 0.0022 24.9 10.6 93 157-268 25-122 (162)
438 PLN02514 cinnamyl-alcohol dehy 57.0 59 0.0013 29.5 8.1 97 156-270 179-276 (357)
439 cd05281 TDH Threonine dehydrog 56.9 40 0.00086 30.2 6.9 96 156-269 162-262 (341)
440 cd08300 alcohol_DH_class_III c 56.5 1.1E+02 0.0024 27.8 9.8 99 155-270 184-289 (368)
441 PRK12743 oxidoreductase; Provi 55.7 81 0.0018 26.8 8.4 71 159-238 3-88 (256)
442 PRK06128 oxidoreductase; Provi 55.6 82 0.0018 27.7 8.6 105 158-270 55-192 (300)
443 PRK05867 short chain dehydroge 55.1 47 0.001 28.2 6.7 74 158-239 9-95 (253)
444 PRK08415 enoyl-(acyl carrier p 55.0 1.3E+02 0.0028 26.2 9.6 104 158-270 5-144 (274)
445 PRK06130 3-hydroxybutyryl-CoA 55.0 36 0.00077 30.3 6.2 99 159-265 5-111 (311)
446 cd08277 liver_alcohol_DH_like 54.8 1.3E+02 0.0028 27.3 10.0 96 155-269 182-286 (365)
447 cd01487 E1_ThiF_like E1_ThiF_l 54.8 39 0.00085 27.5 5.9 31 160-190 1-33 (174)
448 cd05289 MDR_like_2 alcohol deh 54.8 1E+02 0.0022 26.4 9.0 91 156-268 143-237 (309)
449 cd08233 butanediol_DH_like (2R 54.7 1.5E+02 0.0033 26.5 10.3 97 155-269 170-272 (351)
450 TIGR00936 ahcY adenosylhomocys 54.5 47 0.001 31.2 6.9 87 156-268 193-281 (406)
451 cd08266 Zn_ADH_like1 Alcohol d 54.4 1.3E+02 0.0028 26.3 9.7 95 155-268 164-264 (342)
452 cd08278 benzyl_alcohol_DH Benz 54.2 98 0.0021 28.1 9.1 96 155-269 184-285 (365)
453 PRK06997 enoyl-(acyl carrier p 54.0 81 0.0017 27.1 8.1 103 158-269 6-145 (260)
454 PRK12548 shikimate 5-dehydroge 53.7 36 0.00078 30.2 5.9 80 157-244 125-213 (289)
455 cd08298 CAD2 Cinnamyl alcohol 53.6 1.5E+02 0.0034 26.0 10.1 91 155-269 165-256 (329)
456 PRK09072 short chain dehydroge 53.6 60 0.0013 27.7 7.2 73 158-239 5-89 (263)
457 PTZ00075 Adenosylhomocysteinas 53.5 33 0.00071 32.9 5.8 84 157-268 253-340 (476)
458 PRK07063 short chain dehydroge 53.5 56 0.0012 27.8 7.0 75 158-238 7-94 (260)
459 cd08279 Zn_ADH_class_III Class 53.2 43 0.00094 30.3 6.5 96 155-268 180-281 (363)
460 PRK07890 short chain dehydroge 53.2 49 0.0011 28.0 6.6 73 158-238 5-90 (258)
461 PRK06124 gluconate 5-dehydroge 53.1 53 0.0012 27.8 6.8 74 157-238 10-96 (256)
462 PRK05396 tdh L-threonine 3-deh 53.1 1.3E+02 0.0028 26.8 9.6 95 157-269 163-263 (341)
463 TIGR02819 fdhA_non_GSH formald 52.8 89 0.0019 29.0 8.6 105 155-270 183-300 (393)
464 KOG2912 Predicted DNA methylas 52.8 40 0.00087 30.6 5.8 94 140-242 87-191 (419)
465 TIGR00497 hsdM type I restrict 52.5 1.1E+02 0.0024 29.4 9.5 44 157-200 217-265 (501)
466 cd05292 LDH_2 A subgroup of L- 52.3 1E+02 0.0022 27.6 8.7 101 160-270 2-117 (308)
467 PRK11559 garR tartronate semia 52.1 37 0.00081 29.9 5.8 38 160-198 4-43 (296)
468 PRK12742 oxidoreductase; Provi 52.0 1.4E+02 0.003 24.8 9.3 98 158-268 6-130 (237)
469 PRK07904 short chain dehydroge 51.8 53 0.0011 28.1 6.6 77 156-238 6-95 (253)
470 PRK07370 enoyl-(acyl carrier p 51.6 74 0.0016 27.3 7.5 104 158-270 6-148 (258)
471 KOG2671 Putative RNA methylase 51.5 10 0.00022 34.7 2.0 112 155-271 206-356 (421)
472 PF03446 NAD_binding_2: NAD bi 51.3 23 0.0005 28.4 3.9 89 160-270 3-95 (163)
473 PRK06172 short chain dehydroge 50.4 59 0.0013 27.5 6.7 74 158-239 7-93 (253)
474 PTZ00354 alcohol dehydrogenase 50.3 1.7E+02 0.0038 25.5 10.1 95 156-268 139-239 (334)
475 cd08246 crotonyl_coA_red croto 50.2 1.8E+02 0.004 26.5 10.3 44 155-198 191-236 (393)
476 PF05430 Methyltransf_30: S-ad 50.2 15 0.00032 28.4 2.4 56 212-267 31-88 (124)
477 PRK07889 enoyl-(acyl carrier p 50.0 1.4E+02 0.0031 25.4 9.0 100 158-268 7-144 (256)
478 PRK08340 glucose-1-dehydrogena 49.8 58 0.0013 27.8 6.5 70 160-238 2-84 (259)
479 PRK05476 S-adenosyl-L-homocyst 49.5 58 0.0013 30.8 6.8 86 157-268 211-298 (425)
480 PRK00258 aroE shikimate 5-dehy 49.4 66 0.0014 28.3 6.9 42 157-200 122-167 (278)
481 PRK07454 short chain dehydroge 49.4 75 0.0016 26.6 7.1 73 158-239 6-92 (241)
482 PRK08655 prephenate dehydrogen 49.2 50 0.0011 31.3 6.4 86 160-267 2-90 (437)
483 PLN03209 translocon at the inn 49.2 91 0.002 30.7 8.2 81 156-238 78-167 (576)
484 PRK07677 short chain dehydroge 48.6 63 0.0014 27.4 6.5 72 159-238 2-86 (252)
485 PF00106 adh_short: short chai 48.6 50 0.0011 25.7 5.6 73 160-239 2-89 (167)
486 PRK07024 short chain dehydroge 48.5 80 0.0017 26.9 7.2 72 159-239 3-87 (257)
487 PRK07688 thiamine/molybdopteri 48.4 51 0.0011 30.1 6.1 32 158-189 24-57 (339)
488 PLN02712 arogenate dehydrogena 48.4 74 0.0016 32.0 7.7 86 157-265 51-139 (667)
489 KOG0780 Signal recognition par 47.7 99 0.0022 29.0 7.7 105 158-271 101-224 (483)
490 PRK12491 pyrroline-5-carboxyla 47.7 91 0.002 27.4 7.4 86 160-267 4-94 (272)
491 PRK05876 short chain dehydroge 47.6 71 0.0015 27.7 6.8 74 158-239 6-92 (275)
492 PLN02178 cinnamyl-alcohol dehy 47.6 65 0.0014 29.6 6.8 93 157-269 178-273 (375)
493 PF08468 MTS_N: Methyltransfer 47.6 27 0.0006 28.0 3.8 96 158-272 13-109 (155)
494 PRK08862 short chain dehydroge 47.5 68 0.0015 27.0 6.5 73 158-238 5-91 (227)
495 PRK06223 malate dehydrogenase; 47.4 1E+02 0.0022 27.3 7.9 104 159-270 3-120 (307)
496 cd05283 CAD1 Cinnamyl alcohol 47.3 1.3E+02 0.0028 26.8 8.6 94 156-268 168-262 (337)
497 cd05286 QOR2 Quinone oxidoredu 47.3 51 0.0011 28.4 5.9 92 155-268 134-234 (320)
498 PRK06940 short chain dehydroge 47.3 1.6E+02 0.0035 25.4 9.1 70 160-239 4-85 (275)
499 PRK07097 gluconate 5-dehydroge 47.2 71 0.0015 27.3 6.7 75 157-239 9-96 (265)
500 PRK08267 short chain dehydroge 46.9 80 0.0017 26.8 6.9 69 160-238 3-85 (260)
No 1
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.96 E-value=9.4e-30 Score=212.26 Aligned_cols=167 Identities=54% Similarity=1.050 Sum_probs=134.0
Q ss_pred hhHHHHHHHhhhhcccccccccccCccccccccccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC
Q 023562 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (280)
Q Consensus 102 ~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~ 181 (280)
++.||+.+.+||+.++.+.++|++||++++..|+..+..||..+.....+ ......+.||+|||.|+++..++.+.++
T Consensus 2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~--~~~~~~~alDcGAGIGRVTk~lLl~~f~ 79 (218)
T PF05891_consen 2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKP--GKPKFNRALDCGAGIGRVTKGLLLPVFD 79 (218)
T ss_dssp HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-S
T ss_pred cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccc--CCCCcceEEecccccchhHHHHHHHhcC
Confidence 46899999999999999999999999999999999999999987765321 1234579999999999999999988899
Q ss_pred cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCC
Q 023562 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 261 (280)
Q Consensus 182 ~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~Lkp 261 (280)
.|+.||+++..++.|++.+... .....++++..+++|.+++++||+||++|++.|++|+|+..||++|...|+|
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~~------~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~ 153 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGKD------NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKP 153 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCCG------GCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEE
T ss_pred EeEEeccCHHHHHHHHHHhccc------CCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999887652 1355889999999998877899999999999999999999999999999999
Q ss_pred CcEEEEEeccCCCCC
Q 023562 262 GGFFVLKENIARSGS 276 (280)
Q Consensus 262 GG~lii~e~~~~~~~ 276 (280)
+|+|++.||++..++
T Consensus 154 ~G~IvvKEN~~~~~~ 168 (218)
T PF05891_consen 154 NGVIVVKENVSSSGF 168 (218)
T ss_dssp EEEEEEEEEEESSSE
T ss_pred CcEEEEEecCCCCCC
Confidence 999999999998764
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.88 E-value=4.3e-22 Score=170.42 Aligned_cols=111 Identities=22% Similarity=0.245 Sum_probs=100.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||||.++..+++.... +|+++|+|+.||+.|+++....+. .+++|+.+|++++|+++++||+
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~------~~i~fv~~dAe~LPf~D~sFD~ 122 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV------QNVEFVVGDAENLPFPDNSFDA 122 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc------cceEEEEechhhCCCCCCccCE
Confidence 347899999999999999999887534 899999999999999999987543 3399999999999999999999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
|.+++.|++++ +.+.+|++++|+|||||.+++.|.-..
T Consensus 123 vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 123 VTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred EEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 99999999999 777999999999999999999987664
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.86 E-value=1e-21 Score=169.27 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=86.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||||.++..++++.. ..|+++|+|+.|++.|+++....+. .+++++++|++++++++++||
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------~~i~~v~~da~~lp~~d~sfD 118 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------QNIEFVQGDAEDLPFPDNSFD 118 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------SEEEEE-BTTB--S-TT-EE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------CCeeEEEcCHHHhcCCCCcee
Confidence 45678999999999999998887643 2799999999999999999876432 489999999999999889999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
+|++.+.+++++ +...+++++.|+|||||.++|.|.....
T Consensus 119 ~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 119 AVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp EEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred EEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 999999999998 6779999999999999999999876543
No 4
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.83 E-value=6.8e-20 Score=164.61 Aligned_cols=107 Identities=20% Similarity=0.244 Sum_probs=91.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||||||+|.++..+++.+. +|+|+|+|++|++.|+++....+. ..+++++++++++++..+++||+|+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~-----~~~i~~~~~dae~l~~~~~~FD~Vi 203 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPV-----TSTIEYLCTTAEKLADEGRKFDAVL 203 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCc-----ccceeEEecCHHHhhhccCCCCEEE
Confidence 3567999999999999998887655 699999999999999987654321 2478999999998876668999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+..+++|++ +...+++++.++|||||.+++++.
T Consensus 204 ~~~vLeHv~--d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 204 SLEVIEHVA--NPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred EhhHHHhcC--CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 999999999 556999999999999999999854
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.82 E-value=1.5e-19 Score=158.69 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=95.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..++++. . .+|+++|+|+.|++.|+++..... .....+++++++|++++++++++||
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~---~~~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA---KSCYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhh---hccCCCeEEEEcccccCCCCCCCEe
Confidence 4466799999999999999888763 2 279999999999999987753210 0012468999999999998888999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
+|+++++++|++ +...+++++.|+|||||.+++.|.....
T Consensus 148 ~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 148 AITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred EEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 999999999998 6779999999999999999999887543
No 6
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.81 E-value=2.6e-19 Score=131.98 Aligned_cols=95 Identities=27% Similarity=0.378 Sum_probs=82.9
Q ss_pred EEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhh
Q 023562 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG 241 (280)
Q Consensus 162 LDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~ 241 (280)
||+|||+|..+..++++...+|+++|+|+.|++.++++... .++.+..+|++++++++++||+|++..+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~---------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN---------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT---------STEEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc---------cCchheeehHHhCcccccccccccccccee
Confidence 89999999999999988455799999999999999999875 345599999999998889999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 242 HLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 242 ~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
|++ +...+++++.|+|||||+++|
T Consensus 72 ~~~--~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLE--DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSS--HHHHHHHHHHHHEEEEEEEEE
T ss_pred ecc--CHHHHHHHHHHHcCcCeEEeC
Confidence 995 888999999999999999986
No 7
>PLN02244 tocopherol O-methyltransferase
Probab=99.81 E-value=5.9e-19 Score=160.58 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=97.1
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..+++++..+|+++|+|+.|++.++++....++ ..+++|.++|+.++++++++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----~~~v~~~~~D~~~~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----SDKVSFQVADALNQPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcCcccCCCCCCCccEEE
Confidence 46679999999999999999887545799999999999999998766543 4579999999999888788999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+..+++|++ +...+++++.++|||||.|++.+++.
T Consensus 192 s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 192 SMESGEHMP--DKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred ECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 999999998 66799999999999999999988764
No 8
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.80 E-value=5.4e-19 Score=149.45 Aligned_cols=138 Identities=17% Similarity=0.241 Sum_probs=114.2
Q ss_pred cccccccccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcC-------CcEEEEeCCHHHHHHHHHHc
Q 023562 128 GNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARESL 200 (280)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~-------~~v~~vD~S~~~l~~A~~~~ 200 (280)
+-+++.........+.+++...+. +.++.++||++||||.++..++++.. .+|+++|+|+.||+.++++.
T Consensus 74 D~mND~mSlGiHRlWKd~~v~~L~---p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa 150 (296)
T KOG1540|consen 74 DIMNDAMSLGIHRLWKDMFVSKLG---PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRA 150 (296)
T ss_pred HHHHHHhhcchhHHHHHHhhhccC---CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHH
Confidence 334545455556666777777776 67789999999999999999987632 37999999999999999998
Q ss_pred CcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 201 APENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 201 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
...++ .....+.|+++|++++|+++.+||...+.+.+.+++ ++++.+++++|+|||||.|.+.|.-..
T Consensus 151 ~~~~l---~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296)
T KOG1540|consen 151 KKRPL---KASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKV 218 (296)
T ss_pred hhcCC---CcCCceEEEeCCcccCCCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 66444 112348999999999999999999999999999999 777999999999999999999876543
No 9
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.79 E-value=8.5e-19 Score=133.84 Aligned_cols=108 Identities=24% Similarity=0.225 Sum_probs=87.4
Q ss_pred CCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccC-CCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~fDlV 234 (280)
++.+|||+|||+|.++..+++. ...+|+++|+|+.|++.|++++...+. ..++++++.|+ ...... ++||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~i~~~~~d~~~~~~~~-~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----SDRITFVQGDAEFDPDFL-EPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----TTTEEEEESCCHGGTTTS-SCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECccccCcccC-CCCCEE
Confidence 3578999999999999999983 333799999999999999999843322 57899999999 333333 679999
Q ss_pred Eccc-hhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 235 WVQW-CIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 235 ~~~~-~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++.+ +++++.+ ++...+++++.+.|+|||++++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 9998 5554443 5778999999999999999999763
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.79 E-value=2.1e-18 Score=151.61 Aligned_cols=111 Identities=22% Similarity=0.283 Sum_probs=96.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|..+..++.....+|+++|+|+.|++.|+++... ..++.+.++|+.+.++++++||+|
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~~~~~~~~~~FD~V 121 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDILKKDFPENTFDMI 121 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCcccCCCCCCCeEEE
Confidence 457789999999999999988766444799999999999999998754 246899999998877777899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
++..+++|++..+...+++++.++|||||.|++++.+..
T Consensus 122 ~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 122 YSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred EEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 999999999877888999999999999999999988653
No 11
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.79 E-value=1.4e-18 Score=146.37 Aligned_cols=107 Identities=22% Similarity=0.286 Sum_probs=92.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|..+..+++++. +|+++|+|+.|++.++++....++ .++++.+.|+.+++++ ++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~~~~-~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENL------DNLHTAVVDLNNLTFD-GEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCC------CcceEEecChhhCCcC-CCcCEEEE
Confidence 457999999999999999998866 599999999999999998776433 3578888998887664 68999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+.+++|+++++...+++++.++|+|||++++.+.+
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 99999998888999999999999999997765544
No 12
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.78 E-value=3e-19 Score=150.84 Aligned_cols=105 Identities=21% Similarity=0.299 Sum_probs=93.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||-|.++..+++.|. +|+|+|+|+++|+.|+.+....+ .++++.+..++++....++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~g-------v~i~y~~~~~edl~~~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESG-------VNIDYRQATVEDLASAGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhcc-------ccccchhhhHHHHHhcCCCccEEEE
Confidence 578999999999999999999986 59999999999999999988763 4578888888887655589999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
..+++|++ +...+++.|.+++||||.++++...
T Consensus 131 mEVlEHv~--dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 131 MEVLEHVP--DPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred hhHHHccC--CHHHHHHHHHHHcCCCcEEEEeccc
Confidence 99999999 5558999999999999999998654
No 13
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.77 E-value=1e-18 Score=148.67 Aligned_cols=108 Identities=18% Similarity=0.252 Sum_probs=91.7
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
+.+|||+|||+|.++..|++.+. .|+|+|+++.|++.|++..............+++|.+.++++.. +.||.|+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 47899999999999999998876 59999999999999999966554433333446778888888765 569999999
Q ss_pred chhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.+++|+. |++.+++.+.+.|||||.++++.-.
T Consensus 166 evleHV~--dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 166 EVLEHVK--DPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred HHHHHHh--CHHHHHHHHHHHhCCCCceEeeehh
Confidence 9999998 7789999999999999999998543
No 14
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.77 E-value=3.9e-18 Score=150.18 Aligned_cols=127 Identities=21% Similarity=0.271 Sum_probs=96.6
Q ss_pred ccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcce
Q 023562 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (280)
Q Consensus 135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i 214 (280)
+........+.+.+.+. .+++.+|||||||+|.++..+++++..+|+++.+|+++.+.+++++...|+ ...+
T Consensus 43 Le~AQ~~k~~~~~~~~~---l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl-----~~~v 114 (273)
T PF02353_consen 43 LEEAQERKLDLLCEKLG---LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL-----EDRV 114 (273)
T ss_dssp HHHHHHHHHHHHHTTTT-----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-----SSTE
T ss_pred HHHHHHHHHHHHHHHhC---CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-----CCce
Confidence 33333333333434444 778999999999999999999999555799999999999999999998766 5678
Q ss_pred eEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 215 ~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++...|..+++ .+||.|++..+++|+...++..+++++.++|||||.+++...+.
T Consensus 115 ~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 115 EVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp EEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred EEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 99999988765 49999999999999998899999999999999999999875553
No 15
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=9.7e-18 Score=146.21 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=100.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||||||+|.+++++++++..+|+|+++|+++.+.+++++...|+ ..++++...|..++. ++||-|
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----~~~v~v~l~d~rd~~---e~fDrI 141 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----EDNVEVRLQDYRDFE---EPFDRI 141 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----CcccEEEeccccccc---ccccee
Confidence 789999999999999999999998755799999999999999999988776 568999999988876 569999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
+|..+++|+....+..+|+++.++|+|||.+++..-....
T Consensus 142 vSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 142 VSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred eehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 9999999999888999999999999999999987665543
No 16
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.76 E-value=7.3e-18 Score=146.92 Aligned_cols=111 Identities=14% Similarity=0.249 Sum_probs=94.8
Q ss_pred CCccEEEeecCccHHHHHHHHh--cC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIR--YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~--~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
++.+|||+|||+|..+..+++. .. .+++++|+|+.|++.|++++...+. ..+++++++|+.+++.+ .+|+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----~~~v~~~~~d~~~~~~~--~~D~ 128 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRDIAIE--NASM 128 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEeCChhhCCCC--CCCE
Confidence 5679999999999999888763 22 2799999999999999999876433 34789999999887654 5899
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
|+++.+++|+++++...++++++++|||||.|+++|.+...
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~ 169 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFE 169 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence 99999999999878889999999999999999999987543
No 17
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.76 E-value=7.2e-18 Score=141.87 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=90.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|..+..+++++. +|+++|+|+.|++.++++....++ ++.+...|+..++++ ++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~~~~~~-~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-------PLRTDAYDINAAALN-EDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccchhcccc-CCCCEEEE
Confidence 457999999999999999998876 599999999999999988765432 366777787666554 68999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+.+++|+++++...+++++.++|+|||++++.+...
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~ 136 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMD 136 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecc
Confidence 999999987788999999999999999977765543
No 18
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.76 E-value=6.4e-18 Score=136.45 Aligned_cols=106 Identities=20% Similarity=0.298 Sum_probs=91.4
Q ss_pred CCccEEEeecCccHHHHHHHHh-cC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~-~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD 232 (280)
++.+|||+|||+|.++..++.+ +. .+++|+|+|+.|++.|+++++..++ .+++|.++|+.+++ .+ ++||
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~l~~~~~-~~~D 75 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIEDLPQELE-EKFD 75 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTCGCGCSS-TTEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhccccccC-CCee
Confidence 4679999999999999999854 32 3799999999999999998776544 37999999999976 44 7999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+|++..+++|++ +...+++++.+.|++||.+++.+..
T Consensus 76 ~I~~~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEcCchhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999999999 6679999999999999999998765
No 19
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.74 E-value=1.2e-17 Score=143.86 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=94.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..+++.. . .+|+++|+|+.|++.++++....++ .+++++++|+.+++.++++||
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD 116 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAMELPFDDNSFD 116 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechhcCCCCCCCcc
Confidence 4567899999999999999888764 2 2799999999999999998765332 468999999988876668999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+|++.++++|++ +...+++++.++|+|||++++.|...
T Consensus 117 ~V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 117 YVTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred EEEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 999999999988 66799999999999999999988654
No 20
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.74 E-value=3.5e-18 Score=128.52 Aligned_cols=96 Identities=24% Similarity=0.480 Sum_probs=82.0
Q ss_pred EEEeecCccHHHHHHHHhc---C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 161 ALDCGSGIGRITKNLLIRY---F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 161 VLDlGcG~G~~s~~l~~~~---~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
|||+|||+|..+..++... . .+++++|+|+.|++.++++.... ..+++++++|+.+++...++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-------~~~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-------GPKVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-------TTTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-------CCceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999998774 2 48999999999999999998653 24789999999998866689999999
Q ss_pred c-chhhcCChhhHHHHHHHHHHcCCCCc
Q 023562 237 Q-WCIGHLTDDDFVSFFKRAKVGLKPGG 263 (280)
Q Consensus 237 ~-~~l~~~~~~d~~~~l~~~~r~LkpGG 263 (280)
. .+++|++++++..+++++.++|||||
T Consensus 74 ~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 6 55999999999999999999999998
No 21
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.73 E-value=2.7e-17 Score=136.64 Aligned_cols=109 Identities=22% Similarity=0.225 Sum_probs=90.3
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.++||+|||.|+.+.+|+++|++ |+++|.|+..++.+++.+...+ ..++..+.|+.++.++ +.||+|+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~-------l~i~~~~~Dl~~~~~~-~~yD~I~ 99 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEG-------LDIRTRVADLNDFDFP-EEYDFIV 99 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGCCBS-T-TTEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcC-------ceeEEEEecchhcccc-CCcCEEE
Confidence 35679999999999999999999996 9999999999999988776653 4588999999998876 7899999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
+..+++|+..+.++.+++.+.+.++|||++++...+..
T Consensus 100 st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~ 137 (192)
T PF03848_consen 100 STVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMET 137 (192)
T ss_dssp EESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--
T ss_pred EEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc
Confidence 99999999999999999999999999999998655543
No 22
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.73 E-value=3.9e-17 Score=141.59 Aligned_cols=110 Identities=15% Similarity=0.268 Sum_probs=94.3
Q ss_pred CCccEEEeecCccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~---~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
++.+|||+|||+|..+..++++. ..+++++|+|+.|++.|++++...+. ..+++++++|+.+++++ ++|+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~--~~d~ 125 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRHVEIK--NASM 125 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECChhhCCCC--CCCE
Confidence 55789999999999999888763 12799999999999999998765322 34689999999988754 5899
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
|+++++++|+++++...+++++.++|+|||.|+++|++..
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 9999999999988888999999999999999999998753
No 23
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.72 E-value=2.5e-17 Score=144.22 Aligned_cols=105 Identities=21% Similarity=0.252 Sum_probs=90.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++....++ ..+++++++|+.++. ..+++||+|+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~-----~~~v~~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGV-----SDNMQFIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-----ccceEEEEcCHHHHhhhcCCCCCEEE
Confidence 457999999999999999998865 699999999999999999876543 357899999988764 3457999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+..+++|++ +...+++++.++|||||++++..
T Consensus 118 ~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 118 FHAVLEWVA--DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred ehhHHHhhC--CHHHHHHHHHHHcCCCeEEEEEE
Confidence 999999998 55699999999999999998763
No 24
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.72 E-value=1e-16 Score=139.98 Aligned_cols=101 Identities=18% Similarity=0.339 Sum_probs=88.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+...+. +|+++|+|+.|++.++++... ..+.++|++++++.+++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~~-----------~~~~~~d~~~~~~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDAA-----------DHYLAGDIESLPLATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCC-----------CCEEEcCcccCcCCCCcEEEEEE
Confidence 457899999999999998887654 699999999999999987532 46789999988877789999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+.++++++ ++..+++++.++|+|||.++++...
T Consensus 110 ~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 110 NLAVQWCG--NLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999988 6779999999999999999998654
No 25
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.71 E-value=6.6e-17 Score=143.93 Aligned_cols=106 Identities=21% Similarity=0.247 Sum_probs=91.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|..+..+++++. +|+++|+|+.|++.++++....+ .++++...|+..... +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~-------l~v~~~~~D~~~~~~-~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKEN-------LNIRTGLYDINSASI-QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC-------CceEEEEechhcccc-cCCccEEEE
Confidence 345999999999999999998876 59999999999999998876642 357888888877655 479999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+.+++|++++++..+++++.++|+|||++++.+..
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~ 225 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAM 225 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 99999998888999999999999999998776544
No 26
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.70 E-value=6.5e-17 Score=141.56 Aligned_cols=99 Identities=20% Similarity=0.337 Sum_probs=85.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||+|.++..+++..+. +|+|+|+|+.|++.|+++ ++++.++|++++.. +++||+
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~~~~~-~~~fD~ 92 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------GVDARTGDVRDWKP-KPDTDV 92 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChhhCCC-CCCceE
Confidence 346689999999999999999887533 799999999999999763 36788999988753 479999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+++.++||++ +...+++++.++|||||.+++..
T Consensus 93 v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 93 VVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEc
Confidence 99999999998 66799999999999999999863
No 27
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.70 E-value=1.9e-16 Score=142.90 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=89.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..++..+...|+|+|+|+.|+..++......+. ..++.+..+++++++. +++||+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~-----~~~i~~~~~d~e~lp~-~~~FD~V~ 194 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN-----DQRAHLLPLGIEQLPA-LKAFDTVF 194 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-----CCCeEEEeCCHHHCCC-cCCcCEEE
Confidence 35679999999999999999988877899999999999865543221100 2468999999999887 58999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|..+++|.. +...+++++++.|+|||.+++...+
T Consensus 195 s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 195 SMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred ECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 999999988 6679999999999999999987544
No 28
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.69 E-value=5.1e-16 Score=131.40 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=87.5
Q ss_pred CCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+|||+|||+|..+..+.+.. ..+++|+|+|+.|++.|+++.. ++.+.++|+.+ +.++++||+|
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------~~~~~~~d~~~-~~~~~sfD~V 109 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------NINIIQGSLFD-PFKDNFFDLV 109 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------CCcEEEeeccC-CCCCCCEEEE
Confidence 356789999999999999998763 3479999999999999998753 35678888877 5566899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+++.+++|++++++..+++++.+++ ++++++.|...
T Consensus 110 ~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 110 LTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred EECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 9999999999888999999999998 67888888754
No 29
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.69 E-value=3.3e-16 Score=148.82 Aligned_cols=110 Identities=21% Similarity=0.203 Sum_probs=94.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|..+..+++....+|+|+|+|+.|++.|+++.... ..+++|.++|+...++++++||+|
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------~~~v~~~~~d~~~~~~~~~~fD~I 336 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------KCSVEFEVADCTKKTYPDNSFDVI 336 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------CCceEEEEcCcccCCCCCCCEEEE
Confidence 3456799999999999999888765447999999999999999876532 346899999998887666799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
++..+++|++ +...++++++++|||||.+++.+.+..
T Consensus 337 ~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 337 YSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred EECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 9999999998 667999999999999999999987654
No 30
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.69 E-value=7.2e-16 Score=139.98 Aligned_cols=215 Identities=15% Similarity=0.154 Sum_probs=141.6
Q ss_pred CCcceeeeehhhHHHHHHHHhhhccCCCCCCCcccccccccCCCcccccHHHHHHHhhcCCcccchhh--h------HHH
Q 023562 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKK--T------QWY 106 (280)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~w~~~l~~~~~~~~~~--~------~~y 106 (280)
..-.-++.+|+.|+.++...+.+... -+....+.+.|.+..| .+++.++.+...... .....+ . .+-
T Consensus 76 ~~d~~~~~~pk~k~~~~~~l~~~~~~--l~~g~~i~~~G~~~~g--~~s~~k~~~~~~~~~-~~~~ar~~~l~~~~~~~~ 150 (342)
T PRK09489 76 DCDTLIYYWPKNKQEAQFQLMNLLSL--LPVGTDIFVVGENRSG--VRSAEKMLADYAPLN-KIDSARRCGLYHGRLEKQ 150 (342)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHh--CCCCCEEEEEEecccc--HHHHHHHHHHhcCcc-ccccceeEEEEEEecccc
Confidence 34556999999999999998887663 2235677789999999 677787777764321 100000 0 000
Q ss_pred --HHHHhhhhcccccccccccCccccccc-cccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC-c
Q 023562 107 --REGISYWEGVEASVDGVLGGFGNVNEV-DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-E 182 (280)
Q Consensus 107 --~~~~~yW~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~-~ 182 (280)
....+||..... .+-.+.....++.. .++....++...+.. ....+|||+|||+|.++..+++++.. +
T Consensus 151 ~~~~~~~~~~~y~~-~~l~i~~~pgvFs~~~lD~gt~lLl~~l~~-------~~~g~VLDlGCG~G~ls~~la~~~p~~~ 222 (342)
T PRK09489 151 PVFDADKFWKEYQV-DGLTVKTLPGVFSRDGLDVGSQLLLSTLTP-------HTKGKVLDVGCGAGVLSAVLARHSPKIR 222 (342)
T ss_pred CCCcccccceeeec-CCEEEEeCCCCCCCCCCCHHHHHHHHhccc-------cCCCeEEEeccCcCHHHHHHHHhCCCCE
Confidence 011345542211 01011122223222 333333454444432 23458999999999999999988654 7
Q ss_pred EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCC---hhhHHHHHHHHHHcC
Q 023562 183 VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLT---DDDFVSFFKRAKVGL 259 (280)
Q Consensus 183 v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~---~~d~~~~l~~~~r~L 259 (280)
|+++|+|+.|++.|++++..+++ ..++...|+.... .++||+|+++..+|+.. ......+++.+.+.|
T Consensus 223 v~~vDis~~Al~~A~~nl~~n~l-------~~~~~~~D~~~~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~L 293 (342)
T PRK09489 223 LTLSDVSAAALESSRATLAANGL-------EGEVFASNVFSDI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHL 293 (342)
T ss_pred EEEEECCHHHHHHHHHHHHHcCC-------CCEEEEccccccc--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhc
Confidence 99999999999999999877543 3566777765432 47899999998887632 235679999999999
Q ss_pred CCCcEEEEEecc
Q 023562 260 KPGGFFVLKENI 271 (280)
Q Consensus 260 kpGG~lii~e~~ 271 (280)
+|||.++++-|-
T Consensus 294 kpgG~L~iVan~ 305 (342)
T PRK09489 294 NSGGELRIVANA 305 (342)
T ss_pred CcCCEEEEEEeC
Confidence 999999998763
No 31
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.69 E-value=4.6e-16 Score=132.41 Aligned_cols=111 Identities=13% Similarity=0.002 Sum_probs=88.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCC------CCCCCcceeEEEccCCCCCCC-CC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------APDMHKATNFFCVPLQDFTPE-TG 229 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~------~~~~~~~i~~~~~d~~~~~~~-~~ 229 (280)
++.+|||+|||.|..+..|+++|+. |+++|+|+.+++.+.+........ ......++++.++|+.+++.. .+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 5579999999999999999999886 999999999999864432111000 000134689999999888643 35
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+||.|+-..+++|++++....+++.+.++|||||.+++.
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 799999999999999888899999999999999975554
No 32
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.68 E-value=3.9e-16 Score=136.79 Aligned_cols=100 Identities=23% Similarity=0.392 Sum_probs=86.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||+|.++..+++... .+|+++|+|+.|++.|+++.. ++.+..+|+.++... ++||+
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------~~~~~~~d~~~~~~~-~~fD~ 96 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------DCQFVEADIASWQPP-QALDL 96 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------CCeEEECchhccCCC-CCccE
Confidence 44668999999999999999987753 379999999999999998753 478899998877544 69999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+++.+++|++ +...+++++.++|||||.+++.
T Consensus 97 v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 97 IFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEE
Confidence 99999999998 6679999999999999999886
No 33
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.68 E-value=2.9e-16 Score=134.65 Aligned_cols=105 Identities=23% Similarity=0.247 Sum_probs=91.1
Q ss_pred cEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccc
Q 023562 160 VALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~ 238 (280)
+|||+|||+|..+..+++.+. .+|+++|+|+.+++.+++++...++ ..++++...|+...+.+ ++||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----~~~i~~~~~d~~~~~~~-~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----QGRIRIFYRDSAKDPFP-DTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEecccccCCCC-CCCCEeehHH
Confidence 699999999999999988764 3799999999999999999876544 45789999998666544 6899999999
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+++|++ +...+++++.++|+|||++++.+.+.
T Consensus 76 ~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~ 107 (224)
T smart00828 76 VIHHIK--DKMDLFSNISRHLKDGGHLVLADFIA 107 (224)
T ss_pred HHHhCC--CHHHHHHHHHHHcCCCCEEEEEEccc
Confidence 999998 67799999999999999999998753
No 34
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.68 E-value=4.4e-16 Score=137.51 Aligned_cols=110 Identities=24% Similarity=0.187 Sum_probs=93.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-CC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|..+..++... .. +|+++|+|+.|++.|+++....++ .++++..+|+++++.++++||
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhhCCCCCCcee
Confidence 4567899999999999888666553 32 699999999999999998765433 368899999998887668999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+|+++.+++|.+ +...+++++.++|||||+|++++.+.
T Consensus 149 ~Vi~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 149 VIISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred EEEEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 999999999987 66789999999999999999988764
No 35
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.67 E-value=5.3e-16 Score=138.96 Aligned_cols=109 Identities=17% Similarity=0.112 Sum_probs=87.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..++..+...|+|+|+|+.|+..++......+ ...++.+...++++++.. .+||+|
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~-----~~~~v~~~~~~ie~lp~~-~~FD~V 192 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD-----NDKRAILEPLGIEQLHEL-YAFDTV 192 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc-----cCCCeEEEECCHHHCCCC-CCcCEE
Confidence 34567999999999999998988887789999999999986543211100 024577888888888754 589999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+|+.+++|++ +...++++++++|||||.|++.+.+
T Consensus 193 ~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 193 FSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred EEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 9999999998 6679999999999999999987544
No 36
>PRK05785 hypothetical protein; Provisional
Probab=99.67 E-value=1.7e-16 Score=136.39 Aligned_cols=90 Identities=10% Similarity=0.098 Sum_probs=78.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||||.++..+++....+|+|+|+|+.|++.|+++. .+.++|++++++++++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------DKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------ceEEechhhCCCCCCCEEEEEe
Confidence 35799999999999999998774337999999999999998642 2467899999888899999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCC
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPG 262 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpG 262 (280)
.++++|++ ++..+++++.|+|||.
T Consensus 117 ~~~l~~~~--d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 117 SFALHASD--NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred cChhhccC--CHHHHHHHHHHHhcCc
Confidence 99999988 6779999999999994
No 37
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.66 E-value=9.7e-16 Score=145.60 Aligned_cols=108 Identities=23% Similarity=0.416 Sum_probs=92.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC--CCCCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~fDlV 234 (280)
++.+|||+|||+|.++..+++.+ .+|+++|+|+.|++.+++.... ..++.++++|+.+ +++++++||+|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~--------~~~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGH--------YKNVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEecccccccCCCCCCEEEE
Confidence 45689999999999999998775 4699999999999988764332 3568899999864 45556799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
+++++++|++++++..+++++.++|||||++++.|++..
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 999999999988889999999999999999999998864
No 38
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.66 E-value=1.3e-15 Score=131.17 Aligned_cols=103 Identities=24% Similarity=0.378 Sum_probs=90.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.+.+|||+|||+|.++..+++.+.. +++++|+|+.+++.++++.. .++.++.+|+.+.+.++++||+|+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~fD~vi 103 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAEKLPLEDSSFDLIV 103 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchhhCCCCCCceeEEE
Confidence 4578999999999999999888654 68999999999999998764 257889999998886668999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++.+++|+. +...++.++.++|+|||++++.+..
T Consensus 104 ~~~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~~ 137 (240)
T TIGR02072 104 SNLALQWCD--DLSQALSELARVLKPGGLLAFSTFG 137 (240)
T ss_pred Ehhhhhhcc--CHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 999999987 6679999999999999999998653
No 39
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.66 E-value=4.7e-16 Score=125.79 Aligned_cols=98 Identities=28% Similarity=0.379 Sum_probs=79.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..+...+. +++++|+|+.+++. . +..+...+......++++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~----------~~~~~~~~~~~~~~~~~~fD~i~ 83 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------R----------NVVFDNFDAQDPPFPDGSFDLII 83 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------T----------TSEEEEEECHTHHCHSSSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------h----------hhhhhhhhhhhhhccccchhhHh
Confidence 4667999999999999999977767 79999999999997 1 12223332233333458999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++.+++|++ +...+++++.++|||||++++++...
T Consensus 84 ~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 84 CNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 999999999 67899999999999999999998764
No 40
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.66 E-value=1.6e-17 Score=124.24 Aligned_cols=96 Identities=25% Similarity=0.378 Sum_probs=62.4
Q ss_pred EEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CC-CCcEEEEEccc
Q 023562 162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PE-TGRYDVIWVQW 238 (280)
Q Consensus 162 LDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~-~~~fDlV~~~~ 238 (280)
||+|||+|.++..++++... +++++|+|+.|++.+++++..... .+......+..+.. .. .++||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN------DNFERLRFDVLDLFDYDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS---CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------cceeEEEeecCChhhcccccccceehhhh
Confidence 79999999999999988433 799999999999988888766321 22233333332221 11 25999999999
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEE
Q 023562 239 CIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (280)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (280)
++||++ ++..+++++.++|+|||+|
T Consensus 75 vl~~l~--~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHLE--DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred hHhhhh--hHHHHHHHHHHHcCCCCCC
Confidence 999995 7889999999999999986
No 41
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.65 E-value=5.9e-16 Score=127.55 Aligned_cols=103 Identities=29% Similarity=0.440 Sum_probs=84.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
.-.++||+|||+|.++..|+.+ .++++++|+|+.+|+.|+++... ..+++|.+.++.++.++ ++||+|++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--------~~~V~~~~~dvp~~~P~-~~FDLIV~ 112 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--------LPHVEWIQADVPEFWPE-GRFDLIVL 112 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT---S-S-EEEEEE
T ss_pred ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--------CCCeEEEECcCCCCCCC-CCeeEEEE
Confidence 3468999999999999999866 46799999999999999999987 46899999999887654 89999999
Q ss_pred cchhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 237 QWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 237 ~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+.+++|+++ +++..++.++...|+|||.+++-.
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999986 688999999999999999999963
No 42
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.65 E-value=7.5e-16 Score=135.42 Aligned_cols=117 Identities=20% Similarity=0.320 Sum_probs=90.8
Q ss_pred CCCccEEEeecCccH----HHHHHHHhcC------CcEEEEeCCHHHHHHHHHHcCcC----CCC---------------
Q 023562 156 NQHLVALDCGSGIGR----ITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPE----NHM--------------- 206 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~----~s~~l~~~~~------~~v~~vD~S~~~l~~A~~~~~~~----~~~--------------- 206 (280)
.++.+|+|+|||+|. +++.+++.+. .+|+|+|+|+.||+.|++..-.. ++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 356799999999996 4555555432 27999999999999999864210 000
Q ss_pred --CCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE--eccC
Q 023562 207 --APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (280)
Q Consensus 207 --~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (280)
......+++|.+.|+.+.+++.++||+|+|.++++|+++++...+++++.++|+|||++++. |.+.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~~~ 247 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSESLP 247 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcccCC
Confidence 00112468999999998876668999999999999999888889999999999999999995 6553
No 43
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.64 E-value=3.9e-16 Score=128.29 Aligned_cols=113 Identities=22% Similarity=0.291 Sum_probs=92.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCccee-EEEccCCCCC-CCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN-FFCVPLQDFT-PETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~fDlV 234 (280)
....||++|||||..-.+.-..-..+|+++|++++|-+.+.+.+++.. +.++. |..++.++++ .++++||.|
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k------~~~~~~fvva~ge~l~~l~d~s~DtV 149 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK------PLQVERFVVADGENLPQLADGSYDTV 149 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc------CcceEEEEeechhcCcccccCCeeeE
Confidence 345789999999987664322223379999999999999998887742 34555 8999999997 678999999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC-CCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR-SGSE 277 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~-~~~~ 277 (280)
++..+++... +..+.++++.|+|||||.+++.|++.. .+|+
T Consensus 150 V~TlvLCSve--~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~ 191 (252)
T KOG4300|consen 150 VCTLVLCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFW 191 (252)
T ss_pred EEEEEEeccC--CHHHHHHHHHHhcCCCcEEEEEecccccchHH
Confidence 9999999888 777999999999999999999999973 4443
No 44
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=6.2e-15 Score=129.08 Aligned_cols=217 Identities=19% Similarity=0.185 Sum_probs=145.2
Q ss_pred CCcceeeeehhhHHHHHHHHhhhccCCCCCCCcccccccccCCCcccccHHHHHHHhhcCCccc--chhhhHHH-H----
Q 023562 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQ--QEKKTQWY-R---- 107 (280)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~w~~~l~~~~~~--~~~~~~~y-~---- 107 (280)
....-|+.||+.++.++.+.+.....- ++...+.+.|...+| ..+..+|..+..+..... .+....+| .
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~--~~g~~i~v~g~~~~g--~~s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARL--PPGGEIVVVGEKRDG--VRSAEKMLEKYGGPTKTDSARHCMRLHYYSENPP 112 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhC--CCCCeEEEEecccch--HHHHHHHHHHhcCccccchHhhcceeEeecCCCC
Confidence 455678999999999999988877733 224566688888888 778888888776542111 01111111 1
Q ss_pred --HHHhhhhcccccccccccCccccccc-cccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC-cE
Q 023562 108 --EGISYWEGVEASVDGVLGGFGNVNEV-DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EV 183 (280)
Q Consensus 108 --~~~~yW~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v 183 (280)
....+|.......+..+.+.+.++.. .++...++|...+.. ....+|||+|||+|.++..+++..+. ++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~-------~~~~~vlDlGCG~Gvlg~~la~~~p~~~v 185 (300)
T COG2813 113 PFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPP-------DLGGKVLDLGCGYGVLGLVLAKKSPQAKL 185 (300)
T ss_pred cccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCc-------cCCCcEEEeCCCccHHHHHHHHhCCCCeE
Confidence 11233332221222223333344433 566666676666542 33459999999999999999988875 89
Q ss_pred EEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCCh---hhHHHHHHHHHHcCC
Q 023562 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLK 260 (280)
Q Consensus 184 ~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~---~d~~~~l~~~~r~Lk 260 (280)
+.+|+|..+++.|++++..++. .+..++..|+.+-. . ++||+|+||--||-=.. .--.+++....+.|+
T Consensus 186 tmvDvn~~Av~~ar~Nl~~N~~------~~~~v~~s~~~~~v-~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~ 257 (300)
T COG2813 186 TLVDVNARAVESARKNLAANGV------ENTEVWASNLYEPV-E-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLK 257 (300)
T ss_pred EEEecCHHHHHHHHHhHHHcCC------CccEEEEecccccc-c-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhc
Confidence 9999999999999999987644 22245666654422 2 49999999977763221 112489999999999
Q ss_pred CCcEEEEEec
Q 023562 261 PGGFFVLKEN 270 (280)
Q Consensus 261 pGG~lii~e~ 270 (280)
+||.++|+-|
T Consensus 258 ~gGeL~iVan 267 (300)
T COG2813 258 PGGELWIVAN 267 (300)
T ss_pred cCCEEEEEEc
Confidence 9999999988
No 45
>PRK08317 hypothetical protein; Provisional
Probab=99.64 E-value=3.8e-15 Score=128.10 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=92.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..+++.. . .+++++|+|+.+++.++++.... ..++++...|+..++..+++||
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEecccccCCCCCCCce
Confidence 4567899999999999999998875 2 37999999999999999883321 3568899999988776668999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|++..+++|++ +...+++++.++|+|||.+++.+.
T Consensus 90 ~v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 90 AVRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred EEEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEec
Confidence 999999999998 677999999999999999999874
No 46
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.64 E-value=1.7e-15 Score=136.76 Aligned_cols=105 Identities=23% Similarity=0.175 Sum_probs=90.1
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+|||+|||+|.++..+++... .+|+++|+|+.|++.|+++... .++++..+|++++++++++||+|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------KECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---------cCCeEEeccHHhCCCCCCceeEE
Confidence 3567999999999999998887642 3799999999999999987642 35788999999888777899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+++.+++|++ +...+++++.++|+|||.+++.+.+
T Consensus 183 Is~~~L~~~~--d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 183 VSAGSIEYWP--DPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred EEcChhhhCC--CHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999999988 5568999999999999999987654
No 47
>PRK06922 hypothetical protein; Provisional
Probab=99.64 E-value=1.9e-15 Score=144.61 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=91.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDl 233 (280)
++.+|||+|||+|..+..+++.... +|+|+|+|+.|++.|+++.... ..+++++++|+.+++ +++++||+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-------g~~ie~I~gDa~dLp~~fedeSFDv 490 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-------GRSWNVIKGDAINLSSSFEKESVDT 490 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-------CCCeEEEEcchHhCccccCCCCEEE
Confidence 4679999999999999888876543 8999999999999999886542 245778889988776 56689999
Q ss_pred EEccchhhcC-----------ChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 234 IWVQWCIGHL-----------TDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 234 V~~~~~l~~~-----------~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
|+++.++|++ ++.++..+++++.++|||||.+++.|.+..
T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 9999988865 235778999999999999999999987643
No 48
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.63 E-value=2.1e-15 Score=125.78 Aligned_cols=102 Identities=23% Similarity=0.231 Sum_probs=85.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
++.+|||+|||+|..+..++.... .+|+++|+|+.|++.|+++.+..++ .++++.++|+.++.. .++||+|+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~~~~-~~~fDlV~ 117 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEEFGQ-EEKFDVVT 117 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhhCCC-CCCccEEE
Confidence 468999999999999998886543 3899999999999999999887644 348999999988776 57999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++.. . ++..+++.+.+.|||||.+++.+..
T Consensus 118 ~~~~----~--~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 118 SRAV----A--SLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred Eccc----c--CHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 8752 2 5678999999999999999998644
No 49
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.63 E-value=4.3e-15 Score=137.04 Aligned_cols=105 Identities=21% Similarity=0.271 Sum_probs=90.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++....+|+++|+|+.|++.|+++... ..+++...|..++ +++||+|
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhhc---CCCCCEE
Confidence 457789999999999999989877544799999999999999998743 2477888887665 3689999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++..+++|+++.++..+++++.++|||||++++.+..
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~ 269 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG 269 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 9999999998778889999999999999999997643
No 50
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.63 E-value=2.8e-15 Score=129.19 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=94.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
++.+|||+|||+|.++..++..+. .+++++|+++.+++.+++++...+. ..++++...|+.+.+.++++||+|
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~I 125 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----SGNVEFVQGDAEALPFPDNSFDAV 125 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----ccCeEEEecccccCCCCCCCccEE
Confidence 567999999999999999988874 5899999999999999998765322 356889999998877666799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++..+++++. +...+++++.++|+|||.+++.|...
T Consensus 126 ~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 126 TIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred EEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecC
Confidence 9999999988 67799999999999999999987654
No 51
>PRK06202 hypothetical protein; Provisional
Probab=99.62 E-value=3.6e-15 Score=128.76 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=83.2
Q ss_pred CCCccEEEeecCccHHHHHHHHh----cCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCc
Q 023562 156 NQHLVALDCGSGIGRITKNLLIR----YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~----~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 230 (280)
.++.+|||+|||+|.++..+++. ++. +|+++|+|+.|++.|+++... .++++.+.+...++..+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~~~~~~~~~l~~~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---------PGVTFRQAVSDELVAEGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---------CCCeEEEEecccccccCCC
Confidence 45679999999999999888753 332 799999999999999987653 2456666666666555679
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
||+|+++.++||++++++..+++++.++++ |.+++.+.
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecc
Confidence 999999999999998778899999999998 55555543
No 52
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.62 E-value=1.5e-15 Score=125.77 Aligned_cols=103 Identities=22% Similarity=0.369 Sum_probs=92.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
.....+|.|+|||+|..+..|+++++. .|+|+|.|+.||+.|+++. .+++|..+|+.+|.++ .+.|+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----------p~~~f~~aDl~~w~p~-~~~dl 95 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----------PDATFEEADLRTWKPE-QPTDL 95 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----------CCCceecccHhhcCCC-Cccch
Confidence 456679999999999999999998776 8999999999999998886 4589999999999876 68999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE--ecc
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENI 271 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~ 271 (280)
++++-+|+.++ |-..+|.++...|.|||++.+. +|.
T Consensus 96 lfaNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 96 LFANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred hhhhhhhhhcc--ccHHHHHHHHHhhCCCceEEEECCCcc
Confidence 99999999999 6668999999999999999986 554
No 53
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.61 E-value=8e-15 Score=125.05 Aligned_cols=106 Identities=20% Similarity=0.266 Sum_probs=92.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
++.+|||+|||+|.++..+++.+.. +++++|+++.+++.++++... ..++++..+|+.+.+...++||+|
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~--------~~~i~~~~~d~~~~~~~~~~~D~i 110 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL--------PLNIEFIQADAEALPFEDNSFDAV 110 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc--------CCCceEEecchhcCCCCCCcEEEE
Confidence 5679999999999999999888764 799999999999999988752 346889999998877666789999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+++.+++|++ +...+++++.+.|+|||++++.+...
T Consensus 111 ~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 111 TIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred EEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 9999999988 67799999999999999999987643
No 54
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.61 E-value=6.5e-15 Score=130.77 Aligned_cols=160 Identities=31% Similarity=0.499 Sum_probs=125.0
Q ss_pred hhhHHHHHHHhhhhcccccccc-cccCcccccc---ccccchHHHHHHHHhccCCCc--cCCCCccEEEeecCccHHHHH
Q 023562 101 KKTQWYREGISYWEGVEASVDG-VLGGFGNVNE---VDIKGSEAFLQMLLSDRFPNA--RNNQHLVALDCGSGIGRITKN 174 (280)
Q Consensus 101 ~~~~~y~~~~~yW~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~l~~~l~~~l~~~--~~~~~~~VLDlGcG~G~~s~~ 174 (280)
....+|+++..||.....+.+| .+++|...+. .++..+..++..++..++.+. +...-...+|+|.|.|+++..
T Consensus 115 ~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ 194 (342)
T KOG3178|consen 115 NTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKN 194 (342)
T ss_pred hhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHH
Confidence 3457799999999999888888 6778766655 566677777777776433210 012246889999999999999
Q ss_pred HHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHH
Q 023562 175 LLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKR 254 (280)
Q Consensus 175 l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~ 254 (280)
++. .+.+|.++++....+..++..+. . .++.+-+|+..-.+ +-|+||+.|++||++|++..++|++
T Consensus 195 ll~-~fp~ik~infdlp~v~~~a~~~~-~---------gV~~v~gdmfq~~P---~~daI~mkWiLhdwtDedcvkiLkn 260 (342)
T KOG3178|consen 195 LLS-KYPHIKGINFDLPFVLAAAPYLA-P---------GVEHVAGDMFQDTP---KGDAIWMKWILHDWTDEDCVKILKN 260 (342)
T ss_pred HHH-hCCCCceeecCHHHHHhhhhhhc-C---------CcceecccccccCC---CcCeEEEEeecccCChHHHHHHHHH
Confidence 998 45569999999999888877763 2 15666666654422 3469999999999999999999999
Q ss_pred HHHcCCCCcEEEEEeccCCC
Q 023562 255 AKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 255 ~~r~LkpGG~lii~e~~~~~ 274 (280)
|++.|+|||.|++.||++..
T Consensus 261 C~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 261 CKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred HHHhCCCCCEEEEEeccCCC
Confidence 99999999999999998754
No 55
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.61 E-value=1.8e-14 Score=123.05 Aligned_cols=111 Identities=11% Similarity=-0.034 Sum_probs=87.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCC------CCCCCcceeEEEccCCCCCCC-C
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------APDMHKATNFFCVPLQDFTPE-T 228 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~------~~~~~~~i~~~~~d~~~~~~~-~ 228 (280)
.++.+|||+|||.|..+..|+++|+. |++||+|+.+++.+.......... ......++++.++|+.++... .
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCe-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 34579999999999999999999886 999999999999875322111000 001135689999999988643 2
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
+.||+|+-..+++|++++....+++.+.++|+|||.+++
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 589999999999999998889999999999999996444
No 56
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.61 E-value=5.3e-14 Score=128.84 Aligned_cols=217 Identities=17% Similarity=0.161 Sum_probs=132.4
Q ss_pred cCCcceeeeehhhHHHHHHHHhhhccCCCCCCCcccccccccCCCcccccHHHHHHHhhcCCcccchhhhHHHHHHH---
Q 023562 34 AKPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQEKKTQWYREGI--- 110 (280)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~e~w~~~l~~~~~~~~~~~~~y~~~~--- 110 (280)
....+-|+.+|+.+..+..........- .++..++.|.+..|- -.+..+...+.++... .+..++++.
T Consensus 105 ~~~d~vl~~~PK~~~~l~~~l~~l~~~l---~~~~~ii~g~~~k~i-~~~~~~~~~k~l~~~~-----~~~~~~kaR~~~ 175 (378)
T PRK15001 105 QQPGVVLIKVPKTLALLEQQLRALRKVV---TSDTRIIAGAKARDI-HTSTLELFEKVLGPTT-----TTLAWKKARLIN 175 (378)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHhhC---CCCCEEEEEEecCCC-cHHHHHHHHHHhCccc-----hhhhhhhhhhee
Confidence 3455678899999998888877665533 233444455555441 1222444455554311 111122211
Q ss_pred --hhhhcc---ccc-------ccccccCccccccc-cccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHH
Q 023562 111 --SYWEGV---EAS-------VDGVLGGFGNVNEV-DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLI 177 (280)
Q Consensus 111 --~yW~~~---~~~-------~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~ 177 (280)
-|+... +.. ..-.+...+.++.. .++....++...+.. ....+|||+|||+|.++..+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gVFs~~~LD~GtrllL~~lp~-------~~~~~VLDLGCGtGvi~i~la~ 248 (378)
T PRK15001 176 CTFNEPPLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPE-------NLEGEIVDLGCGNGVIGLTLLD 248 (378)
T ss_pred ccCCCCCCcCCCceeEEEEcCceEEEEecCCccCCCCcChHHHHHHHhCCc-------ccCCeEEEEeccccHHHHHHHH
Confidence 111100 000 00011112333332 345555665555532 2235999999999999999998
Q ss_pred hcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhc---CChhhHHHHHH
Q 023562 178 RYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGH---LTDDDFVSFFK 253 (280)
Q Consensus 178 ~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~---~~~~d~~~~l~ 253 (280)
+++. +|+++|+|+.|++.|++++..++.. ...++++...|..+.. ++.+||+|+|+-.+|. +++.....+++
T Consensus 249 ~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~---~~~~v~~~~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~ 324 (378)
T PRK15001 249 KNPQAKVVFVDESPMAVASSRLNVETNMPE---ALDRCEFMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNVAWEMFH 324 (378)
T ss_pred hCCCCEEEEEECCHHHHHHHHHHHHHcCcc---cCceEEEEEccccccC-CCCCEEEEEECcCcccCccCCHHHHHHHHH
Confidence 8755 8999999999999999998654321 0136788888875432 2358999999966653 33344578999
Q ss_pred HHHHcCCCCcEEEEEec
Q 023562 254 RAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 254 ~~~r~LkpGG~lii~e~ 270 (280)
.+.++|+|||.+++.-|
T Consensus 325 ~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 325 HARRCLKINGELYIVAN 341 (378)
T ss_pred HHHHhcccCCEEEEEEe
Confidence 99999999999999854
No 57
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.61 E-value=1e-14 Score=131.07 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=94.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..+..+|||+|||+|.++..++++++. +++++|. +.+++.+++++...++ ..+++++.+|+.+.+++ .+|+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl-----~~rv~~~~~d~~~~~~~--~~D~ 218 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDIYKESYP--EADA 218 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc-----cceEEEEecCccCCCCC--CCCE
Confidence 456679999999999999999988765 7999997 7999999998877654 45789999998765443 3799
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
|++..++|+.+++....+++++++.|+|||.+++.|.+..
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 9999999998877778999999999999999999998653
No 58
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.60 E-value=6.3e-15 Score=122.46 Aligned_cols=100 Identities=23% Similarity=0.243 Sum_probs=82.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
++.+|||+|||+|..+..++..+.. +|+++|+|+.|++.++++.+..++ .+++++++|+.++.. .++||+|+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~~~~-~~~fD~I~ 114 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAEDFQH-EEQFDVIT 114 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhhccc-cCCccEEE
Confidence 3679999999999999988766543 799999999999999988776433 358999999988753 47999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+.. ++ ++..+++.+.++|+|||.+++..
T Consensus 115 s~~-~~-----~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 115 SRA-LA-----SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ehh-hh-----CHHHHHHHHHHhcCCCCEEEEEc
Confidence 876 33 45578899999999999999863
No 59
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.59 E-value=2.5e-14 Score=110.65 Aligned_cols=103 Identities=17% Similarity=0.088 Sum_probs=82.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD 232 (280)
..++.+|||+|||+|.++..++++.. .+|+++|+|+.+++.+++++...+. .+++++..|+... +....+||
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------SNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------CceEEEeccccccChhhcCCCC
Confidence 34456999999999999999998754 3799999999999999988765432 3578888887653 22236899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++..... ....+++.+.+.|+|||.+++.
T Consensus 91 ~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 91 RVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred EEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 999976543 4568999999999999999875
No 60
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.57 E-value=7.3e-15 Score=124.25 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=84.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccC-CCCC--CCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFT--PETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~fD 232 (280)
++.+|||+|||+|..+..+++.... +|+++|+|+.|++.|+++....++ .++.++++|+ +.++ .++++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHHHHHHHHcCccccc
Confidence 4568999999999999999876543 799999999999999998765432 4689999998 6654 4567899
Q ss_pred EEEccchhhcCC------hhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQWCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~~~l~~~~------~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|++++...+.. ......+++++.++|||||.|++..
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 999876542211 1124689999999999999999974
No 61
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.57 E-value=2.8e-14 Score=117.45 Aligned_cols=121 Identities=23% Similarity=0.257 Sum_probs=93.2
Q ss_pred ccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcc
Q 023562 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (280)
Q Consensus 135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~ 213 (280)
+.....+|.+.+... +..+|||+|||+|.++..+++++.. +|+++|+|+.+++.+++++..+++ . +
T Consensus 16 ~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~-----~-~ 82 (170)
T PF05175_consen 16 LDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL-----E-N 82 (170)
T ss_dssp HHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC-----T-T
T ss_pred CCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc-----c-c
Confidence 344445666666532 4578999999999999999988776 799999999999999999988654 2 2
Q ss_pred eeEEEccCCCCCCCCCcEEEEEccchhhcCCh---hhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 214 i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~---~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
++++..|+.+... +++||+|+++-.++.-.+ +-+..+++.+.+.|+|||.+++.-
T Consensus 83 v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 83 VEVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp EEEEESSTTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 8899999866544 479999999976654442 235789999999999999997753
No 62
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.57 E-value=2e-14 Score=122.93 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=88.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..++..+. .|+|+|+|+.|++.|++++...+. ..++.|.++|+.+.+ ++||+|++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~~~---~~fD~ii~ 125 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDV-----AGNVEFEVNDLLSLC---GEFDIVVC 125 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChhhCC---CCcCEEEE
Confidence 467999999999999999987655 699999999999999998865422 236899999988765 68999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
..+++|++++++..+++++.+++++++++.+.
T Consensus 126 ~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 126 MDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred hhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99999998778889999999999988777664
No 63
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.57 E-value=2e-14 Score=128.94 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=81.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++....+.. .....++.|...|+.++ +++||+|+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAA-LPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccc-cccccceEEEEcchhhc---CCCcCEEEE
Confidence 457999999999999999998765 5999999999999999987643110 00024578888888765 378999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (280)
..+++|++++....+++.+.+. .+||.++
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHhh-cCCEEEE
Confidence 9999999877777788888864 5665544
No 64
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.55 E-value=1.7e-14 Score=116.47 Aligned_cols=104 Identities=18% Similarity=0.316 Sum_probs=85.4
Q ss_pred cEEEeecCccHHHHHHHHhcCCc-EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccc
Q 023562 160 VALDCGSGIGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~~-v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~ 238 (280)
+|||+|||+|.+...|++.++.. ++|+|+|+++++.|+..++..++ ...++|.+.|+.+-....++||+|+--.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~-----~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF-----SNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC-----CcceeEEEeeccCCcccccceeEEeecC
Confidence 99999999999999999999884 99999999999999998887765 4459999999988666668999998554
Q ss_pred hhhcC---C---hhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 239 CIGHL---T---DDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 239 ~l~~~---~---~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+.-+ + ...+...+..+.++|+|||+|+|+
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt 180 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT 180 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEE
Confidence 33221 1 123356888999999999999996
No 65
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.55 E-value=4.3e-14 Score=117.20 Aligned_cols=106 Identities=20% Similarity=0.140 Sum_probs=86.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..++..+. +|+++|+|+.|++.+++++... ..++++..+|+.+.. .++||+|++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~--~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLN-------NVGLDVVMTDLFKGV--RGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHc-------CCceEEEEccccccc--CCcccEEEE
Confidence 446899999999999999988776 7999999999999999998654 235788888876643 358999999
Q ss_pred cchhhcCChh-------------------hHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 237 QWCIGHLTDD-------------------DFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 237 ~~~l~~~~~~-------------------d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+..+++.+++ .+..+++++.++|+|||.+++.++..
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 9877666431 14678999999999999999987653
No 66
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.55 E-value=5.7e-14 Score=119.06 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=81.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|..+..+++... .+|+++|+++.|++.|++++...++ ..+++++.+|+.+..+...+||
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----~~~v~~~~~d~~~~~~~~~~fD 144 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----WGVVEVYHGDGKRGLEKHAPFD 144 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCcEEEEECCcccCCccCCCcc
Confidence 45668999999999999988876532 3799999999999999998876543 3458899999877544457999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++..++.+++ +++.+.|+|||++++.
T Consensus 145 ~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 145 AIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred EEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 999998877665 3577899999999885
No 67
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.54 E-value=4.2e-14 Score=119.09 Aligned_cols=146 Identities=21% Similarity=0.334 Sum_probs=110.7
Q ss_pred HHHHhhhhcccccccccccCccccccccccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC---cE
Q 023562 107 REGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN---EV 183 (280)
Q Consensus 107 ~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~---~v 183 (280)
..+..||+.. ...+...+...+.||.+.+...++.. .+...+||++|||.|.....+++-..+ .|
T Consensus 33 ~~~~k~wD~f-----------y~~~~~rFfkdR~wL~~Efpel~~~~-~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v 100 (264)
T KOG2361|consen 33 REASKYWDTF-----------YKIHENRFFKDRNWLLREFPELLPVD-EKSAETILEVGCGVGNTVFPLLKTSPNNRLKV 100 (264)
T ss_pred cchhhhhhhh-----------hhhccccccchhHHHHHhhHHhhCcc-ccChhhheeeccCCCcccchhhhcCCCCCeEE
Confidence 3556788732 12233344455678888877766521 122338999999999999999977555 79
Q ss_pred EEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC----CCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcC
Q 023562 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGL 259 (280)
Q Consensus 184 ~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~L 259 (280)
.++|.|+.+|+..+++.... ..++...+.|+..- +++.+++|+|++.++|.-++++..+.+++++.++|
T Consensus 101 ~acDfsp~Ai~~vk~~~~~~-------e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~ll 173 (264)
T KOG2361|consen 101 YACDFSPRAIELVKKSSGYD-------ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLL 173 (264)
T ss_pred EEcCCChHHHHHHHhccccc-------hhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHh
Confidence 99999999999999987764 34455555555432 35568999999999999999999999999999999
Q ss_pred CCCcEEEEEecc
Q 023562 260 KPGGFFVLKENI 271 (280)
Q Consensus 260 kpGG~lii~e~~ 271 (280)
||||.+++.|..
T Consensus 174 KPGG~llfrDYg 185 (264)
T KOG2361|consen 174 KPGGSLLFRDYG 185 (264)
T ss_pred CCCcEEEEeecc
Confidence 999999998754
No 68
>PLN03075 nicotianamine synthase; Provisional
Probab=99.54 E-value=5e-14 Score=124.31 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=86.9
Q ss_pred CCccEEEeecCccHHHHHH-HHh-cCC-cEEEEeCCHHHHHHHHHHcCc-CCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNL-LIR-YFN-EVDLLEPVSHFLDAARESLAP-ENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l-~~~-~~~-~v~~vD~S~~~l~~A~~~~~~-~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
.+.+|+|+|||.|.++..+ ++. ... +++++|+++.+++.|++.+.. .++ ..+++|..+|+.+.....++||
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----~~rV~F~~~Da~~~~~~l~~FD 197 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----SKRMFFHTADVMDVTESLKEYD 197 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----cCCcEEEECchhhcccccCCcC
Confidence 6689999999988554433 333 333 799999999999999999853 433 5679999999988653347899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++. +++++..++..++++.+.+.|+|||.+++-
T Consensus 198 lVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 198 VVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred EEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 99999 999997778899999999999999999985
No 69
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.52 E-value=6e-14 Score=123.98 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=77.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcC----CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~----~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
...+|||+|||+|.++..+++... ..++|+|+|+.|++.|+++. .++.+..+|+.++++++++||
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecccCCCcCCcee
Confidence 446899999999999998886643 25899999999999998764 347889999999888778999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|++.+. + ..++++.|+|||||++++..+
T Consensus 154 ~I~~~~~----~-----~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 154 AIIRIYA----P-----CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred EEEEecC----C-----CCHHHHHhhccCCCEEEEEeC
Confidence 9998654 1 246789999999999998743
No 70
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.51 E-value=2e-13 Score=117.74 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=87.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV 234 (280)
.++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++... ...+++...++.+++ ...++||+|
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~fD~I 118 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALES-------GLKIDYRQTTAEELAAEHPGQFDVV 118 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHc-------CCceEEEecCHHHhhhhcCCCccEE
Confidence 3567999999999999998887655 5999999999999999887543 234678888887764 234799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++..+++|.+ +...+++.+.+.|+|||.+++...
T Consensus 119 i~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 119 TCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEec
Confidence 9999999988 666899999999999999998754
No 71
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.51 E-value=1.1e-13 Score=119.03 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=84.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..+++.+. .|+++|+|+.|++.|++++...+. ..++++..+|+.. .+++||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~---~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGL-----AGNITFEVGDLES---LLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-----ccCcEEEEcCchh---ccCCcCEEE
Confidence 3567999999999999999988776 499999999999999998765432 2468888888543 247899999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
+..+++|++++++..+++++.+.+++++++.+
T Consensus 133 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 133 CLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred EcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 99999999988889999999998766555544
No 72
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.51 E-value=1.5e-13 Score=114.66 Aligned_cols=102 Identities=18% Similarity=0.245 Sum_probs=81.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+|||+|||+|.++..+++.+.. +|+++|+|+.+++.+++++...++ .+++++++|+.. .. .++||+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------~~i~~~~~d~~~-~~-~~~~D~ 100 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------GNIDIIPGEAPI-EL-PGKADA 100 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------CCeEEEecCchh-hc-CcCCCE
Confidence 446679999999999999999887653 799999999999999998765432 357888888742 22 368999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|++....+ .+..+++.+.+.|+|||++++..
T Consensus 101 v~~~~~~~-----~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 101 IFIGGSGG-----NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred EEECCCcc-----CHHHHHHHHHHhcCCCeEEEEEE
Confidence 99876543 34578999999999999998864
No 73
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.51 E-value=2.1e-13 Score=122.24 Aligned_cols=111 Identities=20% Similarity=0.248 Sum_probs=87.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCC----
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETG---- 229 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~---- 229 (280)
++.+|||+|||+|..+..|++... .+|+++|+|+.||+.+++++.... ...++.++++|+.+. +....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-----p~~~v~~i~gD~~~~~~~~~~~~~~ 137 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-----PQLEVHGICADFTQPLALPPEPAAG 137 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-----CCceEEEEEEcccchhhhhcccccC
Confidence 457899999999999999998853 479999999999999998875421 124577889998763 32211
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
...++++..+++++++++...++++++++|+|||.++|.-+..
T Consensus 138 ~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 138 RRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred CeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 3345555678999998899999999999999999999875544
No 74
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.50 E-value=9.2e-14 Score=116.79 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=84.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD 232 (280)
...+|||+|||+|.++..++++.+. +++++|+++.|++.|++++...++ .+++++++|+.++. .+++++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHHHHhhCCCCcee
Confidence 3458999999999999999988665 899999999999999988776543 47999999997653 3346899
Q ss_pred EEEccchhhcCChh------hHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.|++++...+.... ....+++.+.++|||||.|++.
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 99988654332210 1157999999999999999886
No 75
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.49 E-value=4e-15 Score=124.23 Aligned_cols=117 Identities=20% Similarity=0.255 Sum_probs=90.2
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
..+..++... . ..+-.++||+|||||..+..+... ..+++|||+|++|++.|.++--+. +..++
T Consensus 112 ~~l~emI~~~-~---~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD-----------~L~~A 175 (287)
T COG4976 112 ELLAEMIGKA-D---LGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYD-----------TLYVA 175 (287)
T ss_pred HHHHHHHHhc-c---CCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchH-----------HHHHH
Confidence 4555555432 1 334579999999999999987654 557999999999999999875442 22445
Q ss_pred cCCCCC--CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE-eccCCC
Q 023562 220 PLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK-ENIARS 274 (280)
Q Consensus 220 d~~~~~--~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~-e~~~~~ 274 (280)
++..|. ..+++||+|++..|+.|+. ++..++--+...|+|||.|.|+ |....+
T Consensus 176 ea~~Fl~~~~~er~DLi~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 176 EAVLFLEDLTQERFDLIVAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred HHHHHhhhccCCcccchhhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEecccCCC
Confidence 555443 3457999999999999999 8889999999999999999998 665443
No 76
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.49 E-value=3.6e-13 Score=119.95 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=81.8
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..++..+..+|+++|+|+.|++.|+++...+++ ...+.+...+.... ..++||+|++
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~-----~~~~~~~~~~~~~~--~~~~fDlVva 231 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQV-----SDRLQVKLIYLEQP--IEGKADVIVA 231 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEecccccc--cCCCceEEEE
Confidence 5679999999999999988877766899999999999999999876544 23455565553322 2468999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+...+ .+..++.++.++|||||+++++...
T Consensus 232 n~~~~-----~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 232 NILAE-----VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred ecCHH-----HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 86532 4568999999999999999998654
No 77
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.49 E-value=3.4e-13 Score=115.45 Aligned_cols=105 Identities=20% Similarity=0.316 Sum_probs=88.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-CCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fDlV~ 235 (280)
.+.+|||+|||+|.++..+++.+. .++++|+|+.+++.+++++...+. .++++...|+.+++.. +++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhcCCCCCccEEE
Confidence 467999999999999998887765 599999999999999998765321 1578888888777543 37899999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+..+++|+. +...+++.+.++|+|||.+++...
T Consensus 118 ~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 118 CMEVLEHVP--DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ehhHHHhCC--CHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999988 667999999999999999998754
No 78
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.49 E-value=8.2e-14 Score=107.05 Aligned_cols=107 Identities=22% Similarity=0.260 Sum_probs=85.5
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDlV~ 235 (280)
+.+|||+|||+|.++..+++.+..+++++|+++..++.++.++...+. ..+++++++|+.+.. .++++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----DDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----TTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----CceEEEEECchhhchhhccCceeEEEE
Confidence 358999999999999999988845899999999999999999887544 457999999998765 5568999999
Q ss_pred ccchhhcCC------hhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 236 VQWCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 236 ~~~~l~~~~------~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
++-.+.... ......+++++.++|+|||.+++.-
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 985544221 1235789999999999999998863
No 79
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.49 E-value=6.3e-13 Score=113.52 Aligned_cols=124 Identities=13% Similarity=-0.020 Sum_probs=96.4
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcC------CCCCCCCCcc
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE------NHMAPDMHKA 213 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~------~~~~~~~~~~ 213 (280)
.+|...+... . ..++.+||+.|||.|..+..|+++|+. |+|+|+|+.+++.+.+..... +-.......+
T Consensus 30 p~L~~~~~~l-~---~~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 104 (226)
T PRK13256 30 EFLVKHFSKL-N---INDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDD 104 (226)
T ss_pred HHHHHHHHhc-C---CCCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCc
Confidence 4555555432 1 335679999999999999999999996 999999999999986632111 0000111357
Q ss_pred eeEEEccCCCCCCC---CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 214 TNFFCVPLQDFTPE---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 214 i~~~~~d~~~~~~~---~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+++.++|+.+++.. .++||+|+-..+|++++++....+.+.+.++|+|||.+++.
T Consensus 105 i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 105 IEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred eEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 99999999998642 26899999999999999988899999999999999988775
No 80
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.48 E-value=3.1e-13 Score=115.19 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=80.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|..+..+++... .+|+++|+++.+++.|++++...++ .++++.++|......+.++||
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------~~v~~~~gd~~~~~~~~~~fD 147 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------DNVEVIVGDGTLGYEENAPYD 147 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCcCCCcC
Confidence 55778999999999999987776632 3799999999999999999876543 468999999876554557999
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++.....+++ ..+.+.|||||.+++.
T Consensus 148 ~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 148 RIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred EEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 999987665433 3566789999999885
No 81
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.48 E-value=4.2e-13 Score=114.56 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=80.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|..+..+++.... +|+++|+++.+++.|++++...++ .++++.++|..+......+||
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD 148 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------DNVIVIVGDGTQGWEPLAPYD 148 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCeEEEECCcccCCcccCCCC
Confidence 456789999999999999988876433 599999999999999999877543 468899999876544446899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++.....+++ ..+.+.|+|||++++.
T Consensus 149 ~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 149 RIYVTAAGPKIP--------EALIDQLKEGGILVMP 176 (215)
T ss_pred EEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence 999887655443 4477889999999885
No 82
>PRK14967 putative methyltransferase; Provisional
Probab=99.46 E-value=5e-13 Score=114.73 Aligned_cols=105 Identities=15% Similarity=0.053 Sum_probs=81.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++...+ .++.++.+|+.+.. .+++||+|+
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~-------~~~~~~~~d~~~~~-~~~~fD~Vi 106 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG-------VDVDVRRGDWARAV-EFRPFDVVV 106 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC-------CeeEEEECchhhhc-cCCCeeEEE
Confidence 4567999999999999998887665589999999999999999886542 35778888887643 346899999
Q ss_pred ccchhhcCCh-------------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIGHLTD-------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~~~~~-------------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++-.+..... ..+..+++++.++|||||.+++.
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9843222110 12567899999999999999985
No 83
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.46 E-value=3.1e-13 Score=116.12 Aligned_cols=107 Identities=20% Similarity=0.177 Sum_probs=88.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDl 233 (280)
...+|||+|||+|.++..++++.. .++++||+++.|.+.|++++..+++ ..+++++++|+.++. ....+||+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l-----~~ri~v~~~Di~~~~~~~~~~~fD~ 118 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL-----EERIQVIEADIKEFLKALVFASFDL 118 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc-----hhceeEehhhHHHhhhcccccccCE
Confidence 468999999999999999988855 4899999999999999999988766 688999999999985 33357999
Q ss_pred EEccchhh----------------cCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIG----------------HLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~----------------~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+||--+. |...-+++.+++.+.++|||||.+.++
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 99983321 222224789999999999999999986
No 84
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.45 E-value=3.5e-13 Score=113.64 Aligned_cols=120 Identities=17% Similarity=0.233 Sum_probs=85.7
Q ss_pred cccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcc
Q 023562 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (280)
Q Consensus 134 ~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~ 213 (280)
...++.+++..+... ......++|+|||+|..++.++ .++.+|+++|+|+.||+.|++.....-. ...
T Consensus 16 RP~YPtdw~~~ia~~------~~~h~~a~DvG~G~Gqa~~~ia-e~~k~VIatD~s~~mL~~a~k~~~~~y~-----~t~ 83 (261)
T KOG3010|consen 16 RPSYPTDWFKKIASR------TEGHRLAWDVGTGNGQAARGIA-EHYKEVIATDVSEAMLKVAKKHPPVTYC-----HTP 83 (261)
T ss_pred CCCCcHHHHHHHHhh------CCCcceEEEeccCCCcchHHHH-HhhhhheeecCCHHHHHHhhcCCCcccc-----cCC
Confidence 344556666666542 1122379999999997777555 5577899999999999999887654211 223
Q ss_pred eeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 214 i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
..+...++.++.-.++++|+|++..++|+++ +..|++.++|+||+.|-++..
T Consensus 84 ~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd---le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 84 STMSSDEMVDLLGGEESVDLITAAQAVHWFD---LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ccccccccccccCCCcceeeehhhhhHHhhc---hHHHHHHHHHHcCCCCCEEEE
Confidence 4444555555544468999999999999875 678999999999998844443
No 85
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.45 E-value=1.4e-12 Score=115.84 Aligned_cols=106 Identities=19% Similarity=0.177 Sum_probs=81.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..++.+... +|+++|+|+.+++.|++++...++ ..+++++++|+.+.. ++++||+|+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----~~~i~~~~~D~~~~~-~~~~fD~Iv 194 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIQSDLFAAL-PGRKYDLIV 194 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhhcc-CCCCccEEE
Confidence 4568999999999999999887543 799999999999999999876544 346899999985432 335899999
Q ss_pred ccch------hhcCCh-----------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWC------IGHLTD-----------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~------l~~~~~-----------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++-- +.++.+ +.+..+++.+.+.|+|||++++-
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 8721 111110 12467899999999999999874
No 86
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.44 E-value=4.8e-13 Score=117.20 Aligned_cols=107 Identities=20% Similarity=0.213 Sum_probs=84.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
.+.+|||||||.|+++..++.+++..|.|+|+++...-+.+......+. ...+.+....+++++. .+.||+|+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~-----~~~~~~lplgvE~Lp~-~~~FDtVF~ 188 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ-----DPPVFELPLGVEDLPN-LGAFDTVFS 188 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC-----CccEEEcCcchhhccc-cCCcCEEEE
Confidence 5679999999999999999999999999999999887764432221110 1223344457778776 589999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
..||.|.. +....|+.+++.|+|||.+++-.-+
T Consensus 189 MGVLYHrr--~Pl~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 189 MGVLYHRR--SPLDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred eeehhccC--CHHHHHHHHHHhhCCCCEEEEEEee
Confidence 99999998 6669999999999999999875433
No 87
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.44 E-value=8.8e-13 Score=115.16 Aligned_cols=98 Identities=19% Similarity=0.134 Sum_probs=75.4
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.++..++..+..+|+++|+|+.|++.|++++..+++ ...+.+..++ .+||+|+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~-----~~~~~~~~~~--------~~fD~Vv 184 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV-----ELNVYLPQGD--------LKADVIV 184 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----CceEEEccCC--------CCcCEEE
Confidence 35679999999999999987766666799999999999999999876533 1122222211 2799999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
++... +.+..++.++.++|||||+++++...
T Consensus 185 ani~~-----~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 185 ANILA-----NPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred EcCcH-----HHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 87542 24568899999999999999998654
No 88
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.41 E-value=2e-12 Score=109.03 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=82.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f 231 (280)
..++.+|||+|||+|.++..++... . .+|+++|+|+.|++.+++++...++ ..++.++.+|+.++. ...++|
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----LNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCCeEEEEechhhhHhhcCCCC
Confidence 5577899999999999999887653 2 3799999999999999998876542 246888888887642 223689
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
|+|++... ..++..+++.+.+.|+|||.+++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99998642 23667899999999999999987
No 89
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.41 E-value=2.7e-12 Score=115.16 Aligned_cols=104 Identities=20% Similarity=0.187 Sum_probs=81.0
Q ss_pred ccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++ ..+++++++|+.+.. ++++||+|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----~~~i~~~~~D~~~~l-~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIESDLFAAL-PGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCcEEEEECchhhhC-CCCCccEEEEC
Confidence 68999999999999999887643 799999999999999999876543 346899999986532 23589999987
Q ss_pred ch------h-------hcCCh----------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 238 WC------I-------GHLTD----------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 238 ~~------l-------~~~~~----------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
-. + .|-+. +.+..+++.+.+.|+|||.+++-
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 21 1 11111 12468899999999999999883
No 90
>PRK04266 fibrillarin; Provisional
Probab=99.41 E-value=2.1e-12 Score=110.81 Aligned_cols=101 Identities=16% Similarity=0.075 Sum_probs=77.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC----CCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~ 229 (280)
..++.+|||+|||+|.++..+++... ..|+++|+|+.|++.+.+++.. ..++.++.+|+.+. +.. +
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--------~~nv~~i~~D~~~~~~~~~l~-~ 140 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--------RKNIIPILADARKPERYAHVV-E 140 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--------cCCcEEEECCCCCcchhhhcc-c
Confidence 56778999999999999999887643 3799999999999988777654 24688888888652 122 5
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+||+|++... .+.....+++++.++|||||.++++
T Consensus 141 ~~D~i~~d~~----~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 141 KVDVIYQDVA----QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred cCCEEEECCC----ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 7999985422 1123345789999999999999993
No 91
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.39 E-value=3.8e-12 Score=108.36 Aligned_cols=101 Identities=18% Similarity=0.074 Sum_probs=79.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|..+..++... .+|+++|+++.+++.+++++...++ .++++..+|..+.....++||+|
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~I 148 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGL------HNVSVRHGDGWKGWPAYAPFDRI 148 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCC------CceEEEECCcccCCCcCCCcCEE
Confidence 4567899999999999998776654 4799999999999999999876543 35888999875533334789999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++...++++ .+.+.+.|+|||.+++.-.
T Consensus 149 ~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 998766544 3456789999999988643
No 92
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.39 E-value=4.6e-12 Score=93.31 Aligned_cols=102 Identities=26% Similarity=0.337 Sum_probs=83.0
Q ss_pred cEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcEEEEEccc
Q 023562 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQW 238 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fDlV~~~~ 238 (280)
+|+|+|||.|..+..++.....+++++|+++.+++.+++...... ..++++...|+.+... ..++||+|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------ADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------ccceEEEEcChhhhccccCCceEEEEEcc
Confidence 489999999999998887444589999999999999985332211 3568889999888763 457899999999
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+++++ ......+++.+.+.|+|||.+++.
T Consensus 75 ~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98874 347789999999999999999876
No 93
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.39 E-value=5.2e-12 Score=112.33 Aligned_cols=104 Identities=24% Similarity=0.250 Sum_probs=81.2
Q ss_pred ccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++ ..+++|+++|+.+.. +..+||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----~~~v~~~~~d~~~~~-~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----EHRVEFIQSNLFEPL-AGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhccC-cCCCccEEEEC
Confidence 68999999999999999887653 799999999999999999876543 335899999986532 22489999987
Q ss_pred c-------------hhhcCCh----------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 238 W-------------CIGHLTD----------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 238 ~-------------~l~~~~~----------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
- ++.|-+. +.+..+++.+.+.|+|||++++-
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 1 2222221 14678999999999999999873
No 94
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.38 E-value=7.4e-12 Score=108.92 Aligned_cols=105 Identities=25% Similarity=0.277 Sum_probs=81.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.+.+|||+|||+|.++..++..... .++++|+|+.+++.++++....++ .++++.++|+.+. .+.++||+|+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~-~~~~~fD~Vi 159 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL------DNVTFLQSDWFEP-LPGGKFDLIV 159 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhcc-CcCCceeEEE
Confidence 3468999999999999999877544 799999999999999998876543 3588999998663 3347899999
Q ss_pred ccchhh------cCCh------------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIG------HLTD------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~------~~~~------------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++-.+. ++.. ..+..+++.+.++|+|||.+++.
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 863322 1111 12357899999999999999885
No 95
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.37 E-value=4.4e-12 Score=107.81 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=75.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--------
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 225 (280)
.++.+|||+|||+|.++..++++.. ..|+++|+++ |. . ..++.++++|+.+..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~--------~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------P--------IVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------C--------CCCcEEEecCCCChHHHHHHHHH
Confidence 4567999999999999999988753 2799999988 21 1 135889999998853
Q ss_pred CCCCcEEEEEccchhhcCChh--h-------HHHHHHHHHHcCCCCcEEEEEecc
Q 023562 226 PETGRYDVIWVQWCIGHLTDD--D-------FVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~--d-------~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
..+++||+|+++.+.++...+ + ...+++.+.++|+|||.|++..+.
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 345789999998766554321 1 246899999999999999997543
No 96
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.36 E-value=7.7e-12 Score=105.19 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=78.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..++.... .+|+++|+|+.|++.+++++...++ .+++++.+|+.+ ++.....+|
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~d 111 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------KNVEVIEGSAPECLAQLAPAPD 111 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CCeEEEECchHHHHhhCCCCCC
Confidence 45667999999999999998876543 3799999999999999998866432 358888888754 221113456
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.+++.. ..++..+++++.+.|+|||.+++..+
T Consensus 112 ~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 112 RVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred EEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 665432 12567899999999999999998754
No 97
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.36 E-value=4.8e-12 Score=106.30 Aligned_cols=90 Identities=12% Similarity=-0.022 Sum_probs=72.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CC-CCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-PETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~fDlV 234 (280)
++.+|||+|||+|.++..+++.....++++|+|+.|++.++++ +++++++|+.+ ++ ..+++||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------------CCeEEEEEhhhcccccCCCCcCEE
Confidence 4568999999999999988766544789999999999988642 25677888865 32 445789999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKP 261 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~Lkp 261 (280)
+++.+++|++ +...+++++.+.+++
T Consensus 80 i~~~~l~~~~--d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 80 ILSQTLQATR--NPEEILDEMLRVGRH 104 (194)
T ss_pred EEhhHhHcCc--CHHHHHHHHHHhCCe
Confidence 9999999998 566899999887765
No 98
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.35 E-value=6.1e-12 Score=115.01 Aligned_cols=106 Identities=18% Similarity=0.124 Sum_probs=84.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fDl 233 (280)
.+..+||||||+|.++..++.+.+. .++|+|+++.|++.|.+++...++ .++.++++|+..+ .++++++|.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL------~NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL------KNLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHhhhhCCCCceeE
Confidence 3458999999999999999988765 899999999999999998876544 5789999998664 345689999
Q ss_pred EEccchhhcCChh----hHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDD----DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~----d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|++++...+.... ....+++.+.++|+|||.+.+.
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~ 234 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELR 234 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 9987553322111 1258999999999999999985
No 99
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=6e-12 Score=110.92 Aligned_cols=105 Identities=23% Similarity=0.203 Sum_probs=81.1
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.++.+|||+|||+|.+++..+..|...+.|+|++|.+++.|++|+..++.. ..+.....+....+ ..++||+|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~-----~~~~~~~~~~~~~~-~~~~~DvIV 234 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVE-----LLVQAKGFLLLEVP-ENGPFDVIV 234 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCc-----hhhhcccccchhhc-ccCcccEEE
Confidence 367899999999999999999889989999999999999999999887552 11222222332222 226999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+|-.-+ -+..+...+.+.|||||+++++--+
T Consensus 235 ANILA~-----vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 235 ANILAE-----VLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred ehhhHH-----HHHHHHHHHHHHcCCCceEEEEeeh
Confidence 985321 4558999999999999999998543
No 100
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.35 E-value=3.7e-12 Score=113.04 Aligned_cols=112 Identities=19% Similarity=0.223 Sum_probs=82.1
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
.....++... ..++.+|||+|||+|.+++..+..|..+|.++|+++.+++.|++|+..+++ ..++.+ .
T Consensus 149 ~lcl~~l~~~-----~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~-----~~~~~v--~ 216 (295)
T PF06325_consen 149 RLCLELLEKY-----VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGV-----EDRIEV--S 216 (295)
T ss_dssp HHHHHHHHHH-----SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT------TTCEEE--S
T ss_pred HHHHHHHHHh-----ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCC-----CeeEEE--E
Confidence 4444444443 335679999999999999988888888999999999999999999998765 233333 2
Q ss_pred cCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 220 PLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 220 d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
...+.. .++||+|++|-... -+..++..+.+.|+|||+++++--
T Consensus 217 ~~~~~~--~~~~dlvvANI~~~-----vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 217 LSEDLV--EGKFDLVVANILAD-----VLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp CTSCTC--CS-EEEEEEES-HH-----HHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred Eecccc--cccCCEEEECCCHH-----HHHHHHHHHHHhhCCCCEEEEccc
Confidence 222222 37999999986532 556788899999999999999743
No 101
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.35 E-value=4e-12 Score=103.55 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=71.4
Q ss_pred EEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCc
Q 023562 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 263 (280)
Q Consensus 184 ~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG 263 (280)
+|+|+|+.||+.|+++....+. ....+++|+++|+.+++.++++||+|++.++++++. +...++++++|+|||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~---~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR---SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc---cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCe
Confidence 5899999999999877543210 012468999999999998878999999999999998 77799999999999999
Q ss_pred EEEEEeccCC
Q 023562 264 FFVLKENIAR 273 (280)
Q Consensus 264 ~lii~e~~~~ 273 (280)
.+++.|....
T Consensus 76 ~l~i~d~~~~ 85 (160)
T PLN02232 76 RVSILDFNKS 85 (160)
T ss_pred EEEEEECCCC
Confidence 9999988653
No 102
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.34 E-value=3.7e-12 Score=108.75 Aligned_cols=121 Identities=18% Similarity=0.156 Sum_probs=90.9
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCc-CCCCCC-----CCCcc
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP-ENHMAP-----DMHKA 213 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~-~~~~~~-----~~~~~ 213 (280)
..|...+.. +. ..++.+||..|||.|.....|+++|+. |+|+|+|+.+++.+.+.... ...... ....+
T Consensus 24 p~L~~~~~~-l~---~~~~~rvLvPgCG~g~D~~~La~~G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 24 PALVEYLDS-LA---LKPGGRVLVPGCGKGYDMLWLAEQGHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp HHHHHHHHH-HT---TSTSEEEEETTTTTSCHHHHHHHTTEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred HHHHHHHHh-cC---CCCCCeEEEeCCCChHHHHHHHHCCCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 455555554 22 456679999999999999999999884 99999999999998543322 100000 11246
Q ss_pred eeEEEccCCCCCCCC-CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEE
Q 023562 214 TNFFCVPLQDFTPET-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (280)
Q Consensus 214 i~~~~~d~~~~~~~~-~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (280)
++++++|+.+++... ++||+|+=..+|+-++++...++.+.+.++|+|||.+
T Consensus 99 i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~ 151 (218)
T PF05724_consen 99 ITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRG 151 (218)
T ss_dssp EEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEE
T ss_pred eEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcE
Confidence 899999999886543 5899999999999999999999999999999999993
No 103
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.34 E-value=8.9e-12 Score=113.09 Aligned_cols=108 Identities=14% Similarity=-0.034 Sum_probs=85.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++...+..+. .++|+|+++.|++.++.++...++ .++.+.++|+.+++..+++||+|
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~------~~i~~~~~D~~~l~~~~~~~D~I 252 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGI------EDFFVKRGDATKLPLSSESVDAI 252 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCC------CCCeEEecchhcCCcccCCCCEE
Confidence 45667999999999999887765544 699999999999999999876544 23788999999988766899999
Q ss_pred Eccchhhc-------CChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 235 WVQWCIGH-------LTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 235 ~~~~~l~~-------~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+++-.+.. ...+-...+++.+.++|+|||++++.-
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 99732211 111235789999999999999988763
No 104
>PRK14968 putative methyltransferase; Provisional
Probab=99.34 E-value=1.4e-11 Score=102.43 Aligned_cols=107 Identities=17% Similarity=0.128 Sum_probs=80.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
++.+|||+|||+|.++..++.++ .+++++|+|+.+++.+++++...+.. ..++.+...|+.+... +.+||+|++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~~~~-~~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLFEPFR-GDKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEecccccccc-ccCceEEEE
Confidence 55689999999999999998884 57999999999999999988664331 1127788888765433 358999998
Q ss_pred cchhhcCC-------------------hhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 237 QWCIGHLT-------------------DDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 237 ~~~l~~~~-------------------~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+..+.+.. ...+..+++++.++|+|||.+++..
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 75432211 1235679999999999999988763
No 105
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.33 E-value=1.1e-11 Score=107.44 Aligned_cols=104 Identities=21% Similarity=0.328 Sum_probs=87.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..+..+|+|||+|.|.++..++++++. +++.+|. |..++.+++ . .++++..+|+. -+.+ . +|+
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~---------~rv~~~~gd~f-~~~P-~-~D~ 161 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A---------DRVEFVPGDFF-DPLP-V-ADV 161 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T---------TTEEEEES-TT-TCCS-S-ESE
T ss_pred ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c---------cccccccccHH-hhhc-c-ccc
Confidence 345568999999999999999999887 8999997 888998888 1 46999999997 3333 4 999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCC--cEEEEEeccCCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPG--GFFVLKENIARS 274 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpG--G~lii~e~~~~~ 274 (280)
|++.+++|+.++++...+|+++++.|+|| |.|+|.|.+..+
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 99999999999999999999999999999 999999998644
No 106
>PRK00811 spermidine synthase; Provisional
Probab=99.33 E-value=5.6e-12 Score=111.98 Aligned_cols=112 Identities=19% Similarity=0.207 Sum_probs=83.5
Q ss_pred CCCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDl 233 (280)
.++.+||++|||.|..+..++++ ...+|++||+++.+++.|++.+...+.. .....+++++.+|...+. ...++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGG-AYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccc-cccCCceEEEECchHHHHhhCCCcccE
Confidence 45679999999999999999876 4458999999999999999987542110 001457899999987653 23478999
Q ss_pred EEccchhhcCChhhH--HHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~--~~~l~~~~r~LkpGG~lii~ 268 (280)
|++...-.+.+...+ ..+++.+.+.|+|||++++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 998643222222222 68999999999999998874
No 107
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.33 E-value=1e-11 Score=112.24 Aligned_cols=112 Identities=19% Similarity=0.255 Sum_probs=80.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCC----CCCCCCcceeEEEccCCCC------CC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH----MAPDMHKATNFFCVPLQDF------TP 226 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~----~~~~~~~~i~~~~~d~~~~------~~ 226 (280)
++.+|||+|||-|.....+.......++|+|+|...|+.|+++.....- ......-...|+.+|...- ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999999988888888888999999999999999999821100 0001123466778876532 22
Q ss_pred CCCcEEEEEccchhhcCC--hhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 227 ETGRYDVIWVQWCIGHLT--DDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~--~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
...+||+|-|.++|||.= .+....+|+++.+.|+|||+|+.+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 225999999999999863 345577999999999999999987
No 108
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.33 E-value=1.7e-11 Score=112.89 Aligned_cols=104 Identities=20% Similarity=0.204 Sum_probs=78.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fDlV 234 (280)
++.+|||+|||+|.++..++..... +|+++|+|+.|++.|++++... ..++++.++|+.+... ..++||+|
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-------g~rV~fi~gDl~e~~l~~~~~FDLI 323 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-------GARVEFAHGSWFDTDMPSEGKWDII 323 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------CCcEEEEEcchhccccccCCCccEE
Confidence 3468999999999999988876543 7999999999999999998764 2368999999865432 23589999
Q ss_pred Eccchhhc-----CCh------------------hhHHHHHHHHHHcCCCCcEEEE
Q 023562 235 WVQWCIGH-----LTD------------------DDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 235 ~~~~~l~~-----~~~------------------~d~~~~l~~~~r~LkpGG~lii 267 (280)
+|+-.... ..+ +.+..+++.+.+.|+|||++++
T Consensus 324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99743110 000 1245788888899999999876
No 109
>PRK04457 spermidine synthase; Provisional
Probab=99.32 E-value=1e-11 Score=109.01 Aligned_cols=107 Identities=18% Similarity=0.196 Sum_probs=81.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-CCCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fDlV 234 (280)
++.+|||+|||+|.++..++...+. +++++|+++.+++.|++++...+. ..+++++.+|..++ ...+++||+|
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHHHHHhCCCCCCEE
Confidence 5678999999999999988877654 799999999999999998764321 35789999998664 2223689999
Q ss_pred Eccch-hhcCCh-hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWC-IGHLTD-DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~-l~~~~~-~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++... -...+. -....+++.+.+.|+|||++++-
T Consensus 141 ~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 141 LVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred EEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 97521 111111 11268999999999999999984
No 110
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.31 E-value=1.1e-11 Score=107.10 Aligned_cols=106 Identities=13% Similarity=0.140 Sum_probs=83.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------CC
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~ 227 (280)
.++.+|||+|||+|..+..++.... .+|+++|+++++++.|+++++..++ ..+++++.+|+.+.- .+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----~~~i~~~~gda~~~L~~l~~~~~ 141 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----DHKINFIQSDALSALDQLLNNDP 141 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEccHHHHHHHHHhCCC
Confidence 3567999999999999888876532 2899999999999999999988765 467899999987641 11
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.++||+|++... .+.+..++..+.+.|+|||.+++ ||+.
T Consensus 142 ~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~-dn~l 180 (234)
T PLN02781 142 KPEFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAF-DNTL 180 (234)
T ss_pred CCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEE-EcCC
Confidence 368999987532 34667899999999999998655 5554
No 111
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.31 E-value=3.8e-11 Score=105.98 Aligned_cols=106 Identities=26% Similarity=0.311 Sum_probs=80.4
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+|||+|||+|.++..++.... ..++++|+|+.+++.|++++.. .. ..++.+..+|+.+... +++||+|
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~-~~-----~~~i~~~~~d~~~~~~-~~~fD~I 179 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH-GL-----GARVEFLQGDWFEPLP-GGRFDLI 179 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-CC-----CCcEEEEEccccCcCC-CCceeEE
Confidence 4567899999999999999988764 3799999999999999999761 11 3568999999855322 4689999
Q ss_pred Eccchhh------cCCh------------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIG------HLTD------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~------~~~~------------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+++-... .+.+ +.+..+++++.+.|+|||++++.
T Consensus 180 v~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 180 VSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred EECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9863211 0110 23467889999999999999984
No 112
>PHA03411 putative methyltransferase; Provisional
Probab=99.31 E-value=2.5e-11 Score=105.82 Aligned_cols=100 Identities=19% Similarity=0.258 Sum_probs=80.7
Q ss_pred CCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
...+|||+|||+|.++..++.+. ..+|+++|+|+.|++.++++.. +++++++|+.++... .+||+|+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------~v~~v~~D~~e~~~~-~kFDlII 131 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------EAEWITSDVFEFESN-EKFDVVI 131 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------CCEEEECchhhhccc-CCCcEEE
Confidence 34689999999999999887764 3479999999999999998742 478899999887643 6899999
Q ss_pred ccchhhcCChhh------------------HHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIGHLTDDD------------------FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~~~~~~d------------------~~~~l~~~~r~LkpGG~lii~ 268 (280)
++-.+.+.+..+ +..+++.....|+|+|.+++.
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 998877765432 356778889999999977665
No 113
>PTZ00146 fibrillarin; Provisional
Probab=99.31 E-value=2.5e-11 Score=106.87 Aligned_cols=115 Identities=15% Similarity=-0.007 Sum_probs=81.9
Q ss_pred HHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 142 l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
|...+...+......++.+|||+|||+|.++..++.... ..|++||+|+.|++...+.... ..|+.++..
T Consensus 117 laa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--------r~NI~~I~~ 188 (293)
T PTZ00146 117 LAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--------RPNIVPIIE 188 (293)
T ss_pred HHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCCEEEEC
Confidence 443443334434467788999999999999999998753 2799999999866554444332 246788888
Q ss_pred cCCCC---CCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 220 PLQDF---TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 220 d~~~~---~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+... ....++||+|++.... +++...++.++.+.|||||.|+|.
T Consensus 189 Da~~p~~y~~~~~~vDvV~~Dva~----pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 189 DARYPQKYRMLVPMVDVIFADVAQ----PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CccChhhhhcccCCCCEEEEeCCC----cchHHHHHHHHHHhccCCCEEEEE
Confidence 87642 1123589999987641 235557778999999999999995
No 114
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.28 E-value=3.3e-11 Score=108.51 Aligned_cols=102 Identities=21% Similarity=0.201 Sum_probs=79.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|.++..+++.... .|+++|+++.|++.|++++...+. .++.++.+|..+......+||
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~nV~~i~gD~~~~~~~~~~fD 151 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------ENVIFVCGDGYYGVPEFAPYD 151 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCChhhcccccCCcc
Confidence 456689999999999999988876542 599999999999999998876543 358888998776554446899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|++...+.+++ ..+.+.|+|||.+++..+
T Consensus 152 ~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 152 VIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred EEEECCchHHhH--------HHHHHhcCCCCEEEEEeC
Confidence 999986655433 345678999999988543
No 115
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.26 E-value=1.5e-11 Score=102.36 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=81.5
Q ss_pred HHhhhhcccccccccccCccccccccccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeC
Q 023562 109 GISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (280)
Q Consensus 109 ~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~ 188 (280)
+.+.+.+.++.|+.+..||..........+.+.+...+.. ..+...|.|+|||.+.++..+- ... .|...|+
T Consensus 30 A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~------~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDL 101 (219)
T PF05148_consen 30 ALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKK------RPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDL 101 (219)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCT------S-TTS-EEEES-TT-HHHHH---S----EEEEES
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHh------cCCCEEEEECCCchHHHHHhcc-cCc-eEEEeec
Confidence 3445555555566666666555444444555555555543 2345689999999999987543 333 4999996
Q ss_pred CHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 189 S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
-+ .+-.+..+|+...|++++++|+++++.+|+.- ++..+++++.|+|||||.+.|.
T Consensus 102 va---------------------~n~~Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 102 VA---------------------PNPRVTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp S----------------------SSTTEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEE
T ss_pred cC---------------------CCCCEEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEE
Confidence 31 23346789999999999999999999888753 6788999999999999999999
Q ss_pred eccC
Q 023562 269 ENIA 272 (280)
Q Consensus 269 e~~~ 272 (280)
|-.+
T Consensus 158 EV~S 161 (219)
T PF05148_consen 158 EVKS 161 (219)
T ss_dssp EEGG
T ss_pred Eecc
Confidence 8765
No 116
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.25 E-value=4.5e-11 Score=98.54 Aligned_cols=95 Identities=12% Similarity=0.005 Sum_probs=76.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fDl 233 (280)
.++.||||+|||.|.+...|.+.......|+|+++..+..+.++ .++++++|+++- .+++++||.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------------Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------------GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------------CCCEEECCHHHhHhhCCCCCccE
Confidence 36789999999999999988875444799999999998877664 366889988763 266899999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+++.++.++. ....+++++.|+ |...+++
T Consensus 79 VIlsqtLQ~~~--~P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 79 VILSQTLQAVR--RPDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred EehHhHHHhHh--HHHHHHHHHHHh---cCeEEEE
Confidence 99999999998 555888888665 5555555
No 117
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.25 E-value=4.7e-11 Score=98.07 Aligned_cols=102 Identities=14% Similarity=0.113 Sum_probs=77.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..++++. .+++++|+++.|++.+++++.. ..+++++.+|+.+++.++.+||.|
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchhcCCccccCCCEE
Confidence 3456789999999999999999884 5799999999999999998754 246899999999987665679999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+++-.++ +..+.+..+++.. .+.++|.+++-
T Consensus 82 i~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 82 VGNLPYN-ISTPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred EECCCcc-cHHHHHHHHHhcC--CCcceEEEEEE
Confidence 9886543 4433444444432 24578888775
No 118
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.24 E-value=3.7e-11 Score=100.79 Aligned_cols=117 Identities=23% Similarity=0.391 Sum_probs=74.7
Q ss_pred CCCccEEEeecCccH----HHHHHHHh---cCC---cEEEEeCCHHHHHHHHHHcCc-------------------CC--
Q 023562 156 NQHLVALDCGSGIGR----ITKNLLIR---YFN---EVDLLEPVSHFLDAARESLAP-------------------EN-- 204 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~----~s~~l~~~---~~~---~v~~vD~S~~~l~~A~~~~~~-------------------~~-- 204 (280)
.++.+|+.+||++|. +++.+.+. ... +|.|+|+|+.+|+.|++-.=. .+
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 366899999999994 33333331 111 899999999999999873211 00
Q ss_pred C-CCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE--eccC
Q 023562 205 H-MAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (280)
Q Consensus 205 ~-~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (280)
. ........+.|...|+.+..+..+.||+|+|.+|+.|++++....+++.+.+.|+|||++++- |.+.
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~l~ 180 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSESLP 180 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--ST
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCccCC
Confidence 0 011113578999999988434458999999999999999988899999999999999999996 6665
No 119
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.24 E-value=7.5e-11 Score=103.01 Aligned_cols=102 Identities=22% Similarity=0.224 Sum_probs=77.2
Q ss_pred CccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--CCCcEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVI 234 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~fDlV 234 (280)
+.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++... +++++++|+.+... ..++||+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~---------~~~~~~~D~~~~l~~~~~~~fDlV 157 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA---------GGTVHEGDLYDALPTALRGRVDIL 157 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---------CCEEEEeechhhcchhcCCCEeEE
Confidence 458999999999999998876443 7999999999999999998653 24688888865421 12579999
Q ss_pred Eccchh------hcCChh------------------hHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCI------GHLTDD------------------DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l------~~~~~~------------------d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+++--. ..++++ -+..+++.+.++|+|||++++.
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 988321 111111 1458888999999999999875
No 120
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.24 E-value=4e-11 Score=99.93 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=80.2
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fDlV~ 235 (280)
.+.-|||||||+|..+..+.+.+. .++|+|+|+.||+.|.+.- ...+++.+|+.. +++.+++||.+|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e-----------~egdlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERE-----------LEGDLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhh-----------hhcCeeeeecCCCCCCCCCccceEE
Confidence 467899999999999998877774 6999999999999998732 235678888864 577789999999
Q ss_pred ccchhh---------cCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIG---------HLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~---------~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+..++. |.|...+..|+..++.+|++|+..++.
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 764432 334345778999999999999998885
No 121
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.24 E-value=6.7e-11 Score=96.92 Aligned_cols=102 Identities=21% Similarity=0.178 Sum_probs=86.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
+.++.+++|+|||+|.++..++..++. +|+++|-++++++..++|....+. .|+..+.++.-+.-....++|.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV------DNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC------CcEEEEeccchHhhcCCCCCCE
Confidence 778899999999999999999955555 899999999999999999887653 6889999988765322237999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+.... . .++.+++.+...|||||.+++.
T Consensus 106 iFIGGg-~-----~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 106 IFIGGG-G-----NIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred EEECCC-C-----CHHHHHHHHHHHcCcCCeEEEE
Confidence 999987 3 4558999999999999999885
No 122
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.23 E-value=5.4e-11 Score=99.40 Aligned_cols=97 Identities=22% Similarity=0.160 Sum_probs=71.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
..++.+|||+|||+|.++..++.+... +|+++|+|+.+ . ..++.++++|+.+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~---------~~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P---------IENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c---------CCCceEEEeeCCChhHHHHHHH
Confidence 456789999999999999988877533 69999999865 1 134678888887642
Q ss_pred -CCCCcEEEEEccchh--------hcCCh-hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 226 -PETGRYDVIWVQWCI--------GHLTD-DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 226 -~~~~~fDlV~~~~~l--------~~~~~-~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+.++||+|++..+. .|... .....+++.+.++|+|||.+++.
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 234689999986432 22111 23468999999999999999985
No 123
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=9.6e-11 Score=98.00 Aligned_cols=101 Identities=22% Similarity=0.188 Sum_probs=83.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||||||+|+.+.-|++.. .+|+.+|..+...+.|++++...|+ .|+.+.++|...--++..+||.|
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~------~nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGY------ENVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCC------CceEEEECCcccCCCCCCCcCEE
Confidence 6788999999999999999666554 4799999999999999999988765 46999999986644444799999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++......+|+ .+.+.|+|||++++-..
T Consensus 143 ~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 99988776662 25678999999998654
No 124
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.23 E-value=5.5e-11 Score=113.57 Aligned_cols=104 Identities=21% Similarity=0.210 Sum_probs=78.9
Q ss_pred CccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
+.+|||+|||+|.++..++..... +|+++|+|+.+++.|++++...++ ..+++++++|+.+.. ..++||+|++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----~~~v~~~~~D~~~~~-~~~~fDlIvs 212 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----TDRIQIIHSNWFENI-EKQKFDFIVS 212 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----ccceeeeecchhhhC-cCCCccEEEE
Confidence 468999999999999988876543 799999999999999999876543 346888999875432 2368999998
Q ss_pred cch--------------hhcCCh----------hhHHHHHHHHHHcCCCCcEEEE
Q 023562 237 QWC--------------IGHLTD----------DDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 237 ~~~--------------l~~~~~----------~d~~~~l~~~~r~LkpGG~lii 267 (280)
+-. ..|-+. +.+..+++.+.+.|+|||.+++
T Consensus 213 NPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 213 NPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred CCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 621 111110 1246688899999999999987
No 125
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=1e-10 Score=110.05 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=85.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~ 228 (280)
..++.+|||+|||+|..+..+++... ..|+++|+++.+++.+++++...|+ .++.+.++|+..++ ...
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------KSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------CeEEEEeCChhhccccccccc
Confidence 45678999999999999999987642 2799999999999999999887654 35889999988765 234
Q ss_pred CcEEEEEcc------chhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 229 GRYDVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 229 ~~fDlV~~~------~~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~e 269 (280)
++||.|++. .++.+-++ .+ ...++.++.+.|||||.++.+.
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvyst 384 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYAT 384 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 689999953 34444332 11 3578999999999999998764
No 126
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.21 E-value=1.5e-10 Score=108.65 Aligned_cols=110 Identities=20% Similarity=0.111 Sum_probs=82.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--CCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~f 231 (280)
+.++.+|||+|||+|..+..+++... .+|+++|+|+.+++.++++++..++ ...+.+.++|...... ..++|
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~-----~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL-----TIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEecccccccccccccccc
Confidence 45678999999999999999887643 3799999999999999999987644 2234446666654432 34689
Q ss_pred EEEEcc------chhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~------~~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~e 269 (280)
|.|++. .++++.++ .+ ...++.++.++|||||.+++++
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999842 44555442 11 3579999999999999999874
No 127
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.20 E-value=1.6e-10 Score=101.71 Aligned_cols=109 Identities=15% Similarity=0.081 Sum_probs=83.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
+.++.+|||+|||+|..+..+++... ..|+++|+++.+++.++++++..++ .++.+...|...++...++||
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------LNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEecCCHHHhhhhccCCC
Confidence 45678999999999999998887643 2799999999999999999987644 358888889877654446799
Q ss_pred EEEcc------chhhcCC-------hh-------hHHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQ------WCIGHLT-------DD-------DFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~------~~l~~~~-------~~-------d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.|++. .++.+-+ +. ....+++.+.+.|||||+++.+.
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99853 2222211 11 12469999999999999998764
No 128
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=1.9e-10 Score=108.56 Aligned_cols=108 Identities=18% Similarity=0.221 Sum_probs=83.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|..+..+++... ..|+++|+|+.+++.+++++...|+ .++++.++|+.++.. +++||
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~~~~-~~~fD 320 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARSFSP-EEQPD 320 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCccccccc-CCCCC
Confidence 44667999999999999988876532 2799999999999999999987654 368899999988753 36899
Q ss_pred EEEcc------chhh-------cCChhh-------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQ------WCIG-------HLTDDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~------~~l~-------~~~~~d-------~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|++. .++. +.++.+ ...++.++.++|||||+++++.
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99952 2221 122222 2468999999999999999864
No 129
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=2.1e-10 Score=107.69 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=82.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~f 231 (280)
..++.+|||+|||+|..+..+++... ..|+++|+|+.+++.+++++...++ +++++++|+.++. ...++|
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCcccchhhcccCCC
Confidence 45678999999999999999998765 3799999999999999999877543 3678899987653 234689
Q ss_pred EEEEccc------hhhcC-------Chhh-------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQW------CIGHL-------TDDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~~------~l~~~-------~~~d-------~~~~l~~~~r~LkpGG~lii~e 269 (280)
|.|++.- ++.+- .+.+ ...++..+.++|||||.++++.
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 9999431 12111 1111 2478999999999999999875
No 130
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.19 E-value=6.1e-11 Score=100.51 Aligned_cols=101 Identities=22% Similarity=0.156 Sum_probs=75.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|||+|||+|+.+.-++..... .|+++|+.+...+.|++++...++ .++.+.++|...-..+..+||
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------~nv~~~~gdg~~g~~~~apfD 143 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------DNVEVVVGDGSEGWPEEAPFD 143 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------HSEEEEES-GGGTTGGG-SEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------CceeEEEcchhhccccCCCcC
Confidence 678899999999999999977765332 599999999999999999987543 479999999765444447899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.|++......++ ..+.+.|++||++++--
T Consensus 144 ~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 144 RIIVTAAVPEIP--------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp EEEESSBBSS----------HHHHHTEEEEEEEEEEE
T ss_pred EEEEeeccchHH--------HHHHHhcCCCcEEEEEE
Confidence 999998765444 23667789999999853
No 131
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.18 E-value=6.5e-11 Score=103.74 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=96.6
Q ss_pred cccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcc
Q 023562 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (280)
Q Consensus 134 ~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~ 213 (280)
.+.....|+...+-+.. ..+...++|+|||-|.-.+.+-..+...++|+||++..|+.|+++..+..-....+.-.
T Consensus 98 ~lRnfNNwIKs~LI~~y----~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~ 173 (389)
T KOG1975|consen 98 FLRNFNNWIKSVLINLY----TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFT 173 (389)
T ss_pred ehhhhhHHHHHHHHHHH----hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccce
Confidence 34455567776665433 24567899999999999998888888899999999999999999876531111111234
Q ss_pred eeEEEccCCC------CCCCCCcEEEEEccchhhcC--ChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 214 TNFFCVPLQD------FTPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 214 i~~~~~d~~~------~~~~~~~fDlV~~~~~l~~~--~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+.|+.+|-.. +++.+.+||+|-|++++||. +.+...-++++++++|+|||+|+-+
T Consensus 174 a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 174 AVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred eEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 6788887543 22333459999999999985 3345678999999999999999986
No 132
>PHA03412 putative methyltransferase; Provisional
Probab=99.18 E-value=1.6e-10 Score=98.77 Aligned_cols=98 Identities=12% Similarity=0.145 Sum_probs=73.7
Q ss_pred CccEEEeecCccHHHHHHHHhc----CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~----~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
+.+|||+|||+|.++..++++. ..+|+++|+++.+++.|+++.. ++.++++|+..... +++||+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------~~~~~~~D~~~~~~-~~~FDl 117 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------EATWINADALTTEF-DTLFDM 117 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------CCEEEEcchhcccc-cCCccE
Confidence 5699999999999999887652 2279999999999999998753 37789999887654 369999
Q ss_pred EEccchhhcCCh----------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTD----------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~----------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|++|--+.-... .-...++.++.+++++|+. ++-
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP 161 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIP 161 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeC
Confidence 999943321111 1235689999997777775 443
No 133
>PLN02366 spermidine synthase
Probab=99.17 E-value=2.7e-10 Score=102.08 Aligned_cols=110 Identities=18% Similarity=0.217 Sum_probs=81.9
Q ss_pred CCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD 232 (280)
.++.+||++|||.|..++.++++. ..+|+.||+++.+++.|++.+...+. .....+++++.+|...+- .+.++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhhccCCCCC
Confidence 457899999999999999998763 34899999999999999998764321 112457999999975542 2246899
Q ss_pred EEEccchhhcCChhh--HHHHHHHHHHcCCCCcEEEE
Q 023562 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 233 lV~~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii 267 (280)
+|++...-.+.+... -..+++.+.++|+|||+++.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 999864332222111 25799999999999999976
No 134
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.17 E-value=4.9e-11 Score=118.22 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=84.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++..+++. ..+++++++|+.++. ...++||+|+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHHHHHHHcCCCcCEEE
Confidence 45799999999999999999877768999999999999999999876541 146899999986642 1136899999
Q ss_pred ccch-hhc------C--ChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWC-IGH------L--TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~-l~~------~--~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+.-- +.. . ...++..++..+.++|+|||.+++.-+
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 8621 110 0 013567889999999999999987644
No 135
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=2.2e-10 Score=101.54 Aligned_cols=101 Identities=26% Similarity=0.283 Sum_probs=77.2
Q ss_pred cEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccc
Q 023562 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~ 238 (280)
+|||+|||+|.++..++..... +|+++|+|+.+++.|++|+..+++ .++.++..|+.+ .-.++||+|++|-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------~~~~~~~~dlf~--~~~~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------VRVLVVQSDLFE--PLRGKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------ccEEEEeeeccc--ccCCceeEEEeCC
Confidence 7999999999999999988775 899999999999999999988654 334555555433 2235999999983
Q ss_pred h--hh---cCCh------------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 239 C--IG---HLTD------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 239 ~--l~---~~~~------------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
- -. +..+ +....++..+.+.|+|||++++-
T Consensus 185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 2 11 1111 13578899999999999998874
No 136
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.16 E-value=8.8e-11 Score=100.01 Aligned_cols=130 Identities=17% Similarity=0.221 Sum_probs=92.6
Q ss_pred HHhhhhcccccccccccCccccccccccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeC
Q 023562 109 GISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (280)
Q Consensus 109 ~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~ 188 (280)
+.+.+...+..|+.+..||............+.+.+.+.. ......|.|+|||.+.++. .....|+.+|+
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~------r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL 207 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKR------RPKNIVIADFGCGEAKIAS----SERHKVHSFDL 207 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHh------CcCceEEEecccchhhhhh----ccccceeeeee
Confidence 3445555455566666665444433444444445555543 2345689999999998765 33446888885
Q ss_pred CHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 189 VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 189 S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
- ..+-+++.+|+.+.|.++++.|+++++.+|+- .++..|++++.|+|+|||.++|.
T Consensus 208 ~---------------------a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 208 V---------------------AVNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred e---------------------cCCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEE
Confidence 2 24456788999999999999999999888764 37889999999999999999999
Q ss_pred eccC
Q 023562 269 ENIA 272 (280)
Q Consensus 269 e~~~ 272 (280)
|--+
T Consensus 264 Ev~S 267 (325)
T KOG3045|consen 264 EVKS 267 (325)
T ss_pred ehhh
Confidence 8653
No 137
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.15 E-value=1.6e-10 Score=102.10 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=80.1
Q ss_pred CCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV 234 (280)
.+.+||++|||+|..+..++++. ..+++++|+++.+++.+++.+...+. .....+++++..|...+- ...++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHhCCCCccEE
Confidence 45699999999999999888765 45899999999999999998754211 011246777877765431 123689999
Q ss_pred EccchhhcCChhh--HHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~ 268 (280)
++......-+... ...+++.+.+.|+|||++++.
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9864422212112 358999999999999999885
No 138
>PLN02476 O-methyltransferase
Probab=99.15 E-value=2.4e-10 Score=100.44 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=86.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--C----C
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P----E 227 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~----~ 227 (280)
.++.+|||+|+++|..+..++.... ..|+.+|.++++++.|+++++..|+ ..+++++.+|+.+.- . .
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----~~~I~li~GdA~e~L~~l~~~~~ 191 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----SHKVNVKHGLAAESLKSMIQNGE 191 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhccc
Confidence 3567999999999999998886432 2699999999999999999998766 467999999876531 1 1
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (280)
.++||+|+.-.. ...+..+++.+.++|+|||.|++ ||+...|
T Consensus 192 ~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~-DNvL~~G 233 (278)
T PLN02476 192 GSSYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVM-DNVLWHG 233 (278)
T ss_pred CCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEE-ecCccCC
Confidence 368999987643 35778899999999999999766 6765444
No 139
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.15 E-value=4.7e-10 Score=93.75 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=86.9
Q ss_pred cEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CC------CCCc
Q 023562 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TP------ETGR 230 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~------~~~~ 230 (280)
+|||||||||..+.+++++.+. ...-.|+++..+...++.+...++.+...+ +..|+.+- +. ..++
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P-----~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPP-----LALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCC-----eEeecCCCCCccccccccCCCC
Confidence 6999999999999999998776 677789998888777777666554333222 23344332 21 2468
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (280)
||+|++.+++|-.++...+.+|+.+.++|+|||.+++.-....+|
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G 147 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDG 147 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCC
Confidence 999999999999999999999999999999999999987666555
No 140
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.15 E-value=1.2e-10 Score=107.86 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=82.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCC-cceeEEEccCCCCC----CCCCcE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMH-KATNFFCVPLQDFT----PETGRY 231 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~-~~i~~~~~d~~~~~----~~~~~f 231 (280)
++.+|||+|||+|.++...+..+..+|+++|+|+.+++.|++++..+++ . .+++++++|+.++. ...++|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl-----~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKL-----DLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 4579999999999999877766666899999999999999999987654 2 36899999987752 123589
Q ss_pred EEEEccchhhcCCh-------hhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~~~l~~~~~-------~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|++.--.---.. ..+..++..+.++|+|||+++...
T Consensus 295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 99998733110011 245677778899999999998754
No 141
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=3.4e-10 Score=106.22 Aligned_cols=109 Identities=12% Similarity=0.064 Sum_probs=83.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~--~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f 231 (280)
+.++.+|||+|||+|..+..+++.. ...|+++|+|+.+++.+++++...++ .++.+.+.|...++ ...++|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhhhhhhhhccC
Confidence 4567899999999999999888764 23799999999999999999887654 35789999988765 334689
Q ss_pred EEEEcc------chhhcCC-------hh-------hHHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQ------WCIGHLT-------DD-------DFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~------~~l~~~~-------~~-------d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|.|++. .++.+-+ .. ...+++.++.+.|||||.++++.
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999853 2222211 11 22567999999999999987753
No 142
>PRK01581 speE spermidine synthase; Validated
Probab=99.14 E-value=3.9e-10 Score=102.04 Aligned_cols=115 Identities=21% Similarity=0.213 Sum_probs=81.0
Q ss_pred CCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCC-CCcceeEEEccCCCCC-CCCCcEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPD-MHKATNFFCVPLQDFT-PETGRYD 232 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~-~~~~~fD 232 (280)
..+.+||++|||.|..++.+++.. ..+|++||+++.|++.|++...-..+.... ...+++++.+|..++- ...++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 456799999999999999888754 348999999999999999732110000000 1467899999987753 3346899
Q ss_pred EEEccchh--h-cCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCI--G-HLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l--~-~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|++...- . ....---..+++.+.+.|+|||++++...
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99987421 1 11111125799999999999999988643
No 143
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.13 E-value=4.6e-10 Score=105.94 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=82.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~--~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~f 231 (280)
..++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++...++ .++++.++|+.++.. ..++|
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------TNIETKALDARKVHEKFAEKF 321 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCCcccccchhcccC
Confidence 4466799999999999999998764 23799999999999999999887654 348999999887631 12689
Q ss_pred EEEEccc------hhhcCC-------hhh-------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQW------CIGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~~------~l~~~~-------~~d-------~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|++.- ++.+-+ +.+ ...+++.+.++|||||.++++.
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 9999642 122211 111 2468999999999999998653
No 144
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.13 E-value=2.2e-10 Score=101.40 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=87.0
Q ss_pred CCccEEEeecCccH----HHHHHHHhcC----C-cEEEEeCCHHHHHHHHHHcCcC-----------------------C
Q 023562 157 QHLVALDCGSGIGR----ITKNLLIRYF----N-EVDLLEPVSHFLDAARESLAPE-----------------------N 204 (280)
Q Consensus 157 ~~~~VLDlGcG~G~----~s~~l~~~~~----~-~v~~vD~S~~~l~~A~~~~~~~-----------------------~ 204 (280)
.+.+|+..||.+|. +++.+.+... . +|+|+|+|+.+|+.|++-.-.. +
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34799999999994 3443333211 1 6999999999999998753110 0
Q ss_pred C--CCCCCCcceeEEEccCCCCCC-CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE--eccC
Q 023562 205 H--MAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (280)
Q Consensus 205 ~--~~~~~~~~i~~~~~d~~~~~~-~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (280)
. ........++|...|+.+.++ ..+.||+|+|.+++.|++++....+++++.+.|+|||++++- |.+.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEsl~ 267 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSENFS 267 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCccccc
Confidence 0 012224678899999987542 247899999999999999888999999999999999999885 6653
No 145
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.13 E-value=3.6e-10 Score=95.81 Aligned_cols=120 Identities=22% Similarity=0.344 Sum_probs=92.4
Q ss_pred hHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcC-C-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCccee
Q 023562 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (280)
Q Consensus 138 ~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~-~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~ 215 (280)
...+|..++. ...+++|||+|.+.|+.+..++..-+ + +++.+|+++++++.|+++++..|+ ...+.
T Consensus 47 ~g~~L~~L~~-------~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----~~~i~ 114 (219)
T COG4122 47 TGALLRLLAR-------LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----DDRIE 114 (219)
T ss_pred HHHHHHHHHH-------hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----cceEE
Confidence 3356666554 34678999999999999999987765 3 799999999999999999998776 45577
Q ss_pred EEE-ccCCCC-C-CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 023562 216 FFC-VPLQDF-T-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (280)
Q Consensus 216 ~~~-~d~~~~-~-~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (280)
.+. +|..+. . ...++||+|+.-.. +.+...++..+.++|+|||.++ .||+...|
T Consensus 115 ~~~~gdal~~l~~~~~~~fDliFIDad-----K~~yp~~le~~~~lLr~GGliv-~DNvl~~G 171 (219)
T COG4122 115 LLLGGDALDVLSRLLDGSFDLVFIDAD-----KADYPEYLERALPLLRPGGLIV-ADNVLFGG 171 (219)
T ss_pred EEecCcHHHHHHhccCCCccEEEEeCC-----hhhCHHHHHHHHHHhCCCcEEE-EeecccCC
Confidence 777 355432 2 23589999987543 4567799999999999999874 57776555
No 146
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.10 E-value=3.5e-10 Score=95.62 Aligned_cols=105 Identities=17% Similarity=0.284 Sum_probs=83.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-C-----CCC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-----PET 228 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-----~~~ 228 (280)
++.+||||||++|+.+..+++..+. +|+.+|++++..+.|++++...|+ ..+++++.+|..+. + ...
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----~~~I~~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----DDRIEVIEGDALEVLPELANDGEE 119 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----GGGEEEEES-HHHHHHHHHHTTTT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----CCcEEEEEeccHhhHHHHHhccCC
Confidence 5679999999999999999976443 899999999999999999988765 56899999987653 1 113
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++||+|+.-.. ..++..++..+.++|+|||.|++ ||+.
T Consensus 120 ~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~-DN~l 157 (205)
T PF01596_consen 120 GQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIA-DNVL 157 (205)
T ss_dssp TSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEE-ETTT
T ss_pred CceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEE-cccc
Confidence 58999997653 45677899999999999998866 4543
No 147
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.07 E-value=2.2e-10 Score=96.07 Aligned_cols=102 Identities=18% Similarity=0.330 Sum_probs=88.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
....++|+|||.|.+.+.+..++...++.+|.|-.|++.++..-.. ......+.+|=+.+++.++++|+|++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp--------~i~~~~~v~DEE~Ldf~ens~DLiis 143 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDP--------SIETSYFVGDEEFLDFKENSVDLIIS 143 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCC--------ceEEEEEecchhcccccccchhhhhh
Confidence 3457999999999999999999988999999999999998765322 45677888887878888899999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+..+|+.+ +++..+.+|...|||+|.|+-+
T Consensus 144 SlslHW~N--dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 144 SLSLHWTN--DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhc--cCchHHHHHHHhcCCCccchhH
Confidence 99999988 8889999999999999998753
No 148
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.06 E-value=7.2e-10 Score=93.32 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=78.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..++.++..+|+++|.++.+++.+++++...+. .+++++++|+.++. ...++||+|+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v~~~~~D~~~~l~~~~~~fDlV~ 126 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------GNARVVNTNALSFLAQPGTPHNVVF 126 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEEchHHHHHhhcCCCceEEE
Confidence 4569999999999999977777777899999999999999999877543 36889999986642 2235799999
Q ss_pred ccchhhcCChhhHHHHHHHHHH--cCCCCcEEEEEec
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r--~LkpGG~lii~e~ 270 (280)
++--+.. .-...+++.+.. +|+|+|++++.-+
T Consensus 127 ~DPPy~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 127 VDPPFRK---GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ECCCCCC---ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 9865321 123455666655 4899998887643
No 149
>PRK03612 spermidine synthase; Provisional
Probab=99.06 E-value=4.9e-10 Score=107.56 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=81.2
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCC-CCCCcceeEEEccCCCCC-CCCCcEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMA-PDMHKATNFFCVPLQDFT-PETGRYD 232 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~-~~~~~~i~~~~~d~~~~~-~~~~~fD 232 (280)
+++.+|||+|||+|..+..++++.. .+|+++|+++++++.++++..-..+.. .-...+++++.+|..++. ..+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999987644 589999999999999998432111000 001357899999987752 2346899
Q ss_pred EEEccchhhcCChh-h--HHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDD-D--FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~-d--~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|++.......+.. . -.++++.+.+.|+|||.+++.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 99997543221110 1 146999999999999999874
No 150
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.04 E-value=5.8e-10 Score=99.31 Aligned_cols=103 Identities=19% Similarity=0.204 Sum_probs=84.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
+++.|||+|||+|.++...++.|..+|.+||.|.-+ +.|++.+..+++ ...++++.+.++++.++.+++|+|++
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~-----~~ii~vi~gkvEdi~LP~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGL-----EDVITVIKGKVEDIELPVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCc-----cceEEEeecceEEEecCccceeEEee
Confidence 567999999999999999998898899999977654 999999988776 56799999999988666689999998
Q ss_pred cch---hhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 237 QWC---IGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 237 ~~~---l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
-|. +-| +.-+..++-.=-+.|+|||.++=
T Consensus 134 EWMGy~Ll~--EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 134 EWMGYFLLY--ESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hhhhHHHHH--hhhhhhhhhhhhhccCCCceEcc
Confidence 754 322 22456777777899999999863
No 151
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.04 E-value=1.1e-09 Score=103.28 Aligned_cols=103 Identities=19% Similarity=0.177 Sum_probs=78.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~ 230 (280)
..++.+|||+|||+|.++..+++.. .+|+++|+|+.|++.|++++...++ .+++|+++|+.+.. ..+++
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL------DNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEeChHHhhhhhhhhcCC
Confidence 3456799999999999999988775 5799999999999999999876543 36899999986532 23467
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
||+|+++-.-. .....++.+.+ ++|+++++++=|
T Consensus 368 fD~Vi~dPPr~-----g~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 368 FDKVLLDPPRA-----GAAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred CCEEEECcCCc-----ChHHHHHHHHh-cCCCeEEEEEeC
Confidence 99999864321 12245565555 699999999833
No 152
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.04 E-value=1.2e-09 Score=94.01 Aligned_cols=94 Identities=21% Similarity=0.292 Sum_probs=76.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
...++||||+|-|..+..++ ..+.+|++.|.|+.|....+++- . ...+..++...+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~kg-------------~--~vl~~~~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKKG-------------F--TVLDIDDWQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhCC-------------C--eEEehhhhhccCCceEEEee
Confidence 45689999999999999886 56778999999999988766541 1 23344445544578999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
-+++.+.. +...+++.+++.|+|+|++++.
T Consensus 158 LNvLDRc~--~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 158 LNVLDRCD--RPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred hhhhhccC--CHHHHHHHHHHHhCCCCEEEEE
Confidence 99999988 6669999999999999999984
No 153
>PLN02672 methionine S-methyltransferase
Probab=99.04 E-value=1.4e-09 Score=110.52 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=80.6
Q ss_pred CccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCC----------CCCCCcceeEEEccCCCCCC
Q 023562 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHM----------APDMHKATNFFCVPLQDFTP 226 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~----------~~~~~~~i~~~~~d~~~~~~ 226 (280)
+.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|++|+..+++. ......+++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999988765 38999999999999999998765331 00112468999999876542
Q ss_pred C-CCcEEEEEccch--h------------hcCC-------------------h---hhHHHHHHHHHHcCCCCcEEEE
Q 023562 227 E-TGRYDVIWVQWC--I------------GHLT-------------------D---DDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 227 ~-~~~fDlV~~~~~--l------------~~~~-------------------~---~d~~~~l~~~~r~LkpGG~lii 267 (280)
. ..+||+|++|-- . .|-+ . +-+..++..+.+.|+|||++++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 2 137999998722 1 0100 1 1136788889999999998876
No 154
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=6.7e-10 Score=90.91 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=64.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
.+.+|+|+|||||.++...+..++..|.++|+++++++.+++|..+. ..++.|.++|+.++. +++|.+++
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-------~g~v~f~~~dv~~~~---~~~dtvim 114 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-------LGDVEFVVADVSDFR---GKFDTVIM 114 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-------CCceEEEEcchhhcC---CccceEEE
Confidence 45689999999999999998889889999999999999999998873 467999999999986 67899988
Q ss_pred cc
Q 023562 237 QW 238 (280)
Q Consensus 237 ~~ 238 (280)
|-
T Consensus 115 NP 116 (198)
T COG2263 115 NP 116 (198)
T ss_pred CC
Confidence 73
No 155
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.02 E-value=2.3e-09 Score=90.68 Aligned_cols=109 Identities=21% Similarity=0.259 Sum_probs=75.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCC---CCCC------------------------
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPEN---HMAP------------------------ 208 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~---~~~~------------------------ 208 (280)
.+..+|||||..|.++..+++.... .|.|+||++..|..|+++++--. ....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4678999999999999999987544 89999999999999999876310 0000
Q ss_pred --CCCccee-------EEEccCCCCCCCCCcEEEEEccch--hhcCC--hhhHHHHHHHHHHcCCCCcEEEE
Q 023562 209 --DMHKATN-------FFCVPLQDFTPETGRYDVIWVQWC--IGHLT--DDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 209 --~~~~~i~-------~~~~d~~~~~~~~~~fDlV~~~~~--l~~~~--~~d~~~~l~~~~r~LkpGG~lii 267 (280)
.+..++. +...|+-+ .....||+|+|-.+ -.|+. |+-+..|++++.++|.|||++++
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~--~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLD--MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccCCcchhcccccEEEecchhhh--hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 0011111 11222221 22358999987632 12444 46789999999999999999987
No 156
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.00 E-value=1.4e-09 Score=98.08 Aligned_cols=102 Identities=13% Similarity=0.051 Sum_probs=76.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..++.++ .+|+++|+|+.|++.|++++...++ .+++|+++|+.++.. ..++||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL------TNVQFQALDSTQFATAQGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCHHHHHHhcCCCCeEEE
Confidence 45789999999999999999876 4799999999999999999877543 368999999987642 235799999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++-.-.-+. ..+++.+ ..++|+++++++=|
T Consensus 246 ~dPPr~G~~----~~~~~~l-~~~~~~~ivyvsc~ 275 (315)
T PRK03522 246 VNPPRRGIG----KELCDYL-SQMAPRFILYSSCN 275 (315)
T ss_pred ECCCCCCcc----HHHHHHH-HHcCCCeEEEEECC
Confidence 873311111 1333333 44788999888744
No 157
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.00 E-value=2.4e-09 Score=92.99 Aligned_cols=118 Identities=18% Similarity=0.206 Sum_probs=89.8
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEE
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~ 217 (280)
.+|..++. ..++.+|||+|+++|+.+..++..... +|+.+|.++...+.|++++...|+ ..+++++
T Consensus 69 ~lL~~l~~-------~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----~~~I~~~ 136 (247)
T PLN02589 69 QFLNMLLK-------LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----AHKIDFR 136 (247)
T ss_pred HHHHHHHH-------HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEEE
Confidence 45555554 235679999999999999988865332 799999999999999999988766 5689999
Q ss_pred EccCCCCC--C-----CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 023562 218 CVPLQDFT--P-----ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (280)
Q Consensus 218 ~~d~~~~~--~-----~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (280)
.++..+.- . ..++||+|+.-.- ...+..++..+.++|+|||.|++ ||+.-.|
T Consensus 137 ~G~a~e~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~-DNvl~~G 195 (247)
T PLN02589 137 EGPALPVLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY-DNTLWNG 195 (247)
T ss_pred eccHHHHHHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE-cCCCCCC
Confidence 99876541 1 1268999997643 34567888999999999999655 6764333
No 158
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.99 E-value=2e-09 Score=90.50 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=80.0
Q ss_pred cEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-C--CCCCcEEEEE
Q 023562 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T--PETGRYDVIW 235 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~--~~~~~fDlV~ 235 (280)
.+||||||.|.+...++...++ .+.|+|++...+..+..++...++ .|+.++++|+..+ . ++++++|-|+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l------~Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL------KNVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT------SSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc------cceEEEEccHHHHHhhcccCCchheEE
Confidence 7999999999999999998887 899999999999999888776544 7899999998873 2 4458999999
Q ss_pred ccchhhcCChhh------HHHHHHHHHHcCCCCcEEEEEe
Q 023562 236 VQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 236 ~~~~l~~~~~~d------~~~~l~~~~r~LkpGG~lii~e 269 (280)
.++.=-+..... -..++..+.++|+|||.|.+..
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 876522211111 2579999999999999999864
No 159
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=4.1e-09 Score=90.23 Aligned_cols=103 Identities=21% Similarity=0.236 Sum_probs=86.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+|+|.|.|+|.++.+|+.. +. .+|+.+|+-+..++.|++|++..++ ..++++...|+.+...+ ..||
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----~d~v~~~~~Dv~~~~~~-~~vD 165 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----GDRVTLKLGDVREGIDE-EDVD 165 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----ccceEEEeccccccccc-cccC
Confidence 678899999999999999999864 33 2899999999999999999988655 55688899999887666 4899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|+.-. + +.-.++..+.++|+|||.+++.-+
T Consensus 166 av~LDm-----p--~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 166 AVFLDL-----P--DPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred EEEEcC-----C--ChHHHHHHHHHHhCCCcEEEEEcC
Confidence 998643 3 556899999999999999988533
No 160
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.96 E-value=1.5e-09 Score=89.48 Aligned_cols=111 Identities=18% Similarity=0.109 Sum_probs=74.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~ 229 (280)
..++.+|||+|||+|..++.++.. +..+|+..|.++ .++..+.++..++. ....++.+...+..+-. ....
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-S
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCcccccccccc
Confidence 346789999999999999988877 455899999999 99999999877542 11355777777765421 2336
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+||+|+.+.++.. +.....+++.+.++|+|+|.+++.-..
T Consensus 119 ~~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 119 SFDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp SBSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred cCCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 8999999999875 357789999999999999987776443
No 161
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.93 E-value=1.3e-08 Score=81.61 Aligned_cols=117 Identities=18% Similarity=0.191 Sum_probs=94.4
Q ss_pred hHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCccee
Q 023562 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (280)
Q Consensus 138 ~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~ 215 (280)
++.++.+.....+. ...+.-|||+|.|||-++..+++++.. .++++|.|++......+.+.. ++
T Consensus 32 sSs~lA~~M~s~I~---pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~-----------~~ 97 (194)
T COG3963 32 SSSILARKMASVID---PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG-----------VN 97 (194)
T ss_pred CcHHHHHHHHhccC---cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC-----------cc
Confidence 34555555544443 566778999999999999999999876 899999999999999998765 45
Q ss_pred EEEccCCCCC-----CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 216 FFCVPLQDFT-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 216 ~~~~d~~~~~-----~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++.+|..++. ..+..||.|+|.--+..++.....+.++.+...|.+||.++--
T Consensus 98 ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 98 IINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred ccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 7777776654 2345799999998888888777789999999999999988764
No 162
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.91 E-value=8.8e-09 Score=90.18 Aligned_cols=116 Identities=21% Similarity=0.304 Sum_probs=87.7
Q ss_pred CCccEEEeecCccH----HHHHHHHhcC-----C-cEEEEeCCHHHHHHHHHHcCc-----CCCC---------------
Q 023562 157 QHLVALDCGSGIGR----ITKNLLIRYF-----N-EVDLLEPVSHFLDAARESLAP-----ENHM--------------- 206 (280)
Q Consensus 157 ~~~~VLDlGcG~G~----~s~~l~~~~~-----~-~v~~vD~S~~~l~~A~~~~~~-----~~~~--------------- 206 (280)
.+.+|.-+||++|. +++.+.+... . +|+++|+|..+|+.|+.-.-. .++.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47899999999993 4444444442 2 899999999999999864322 1100
Q ss_pred ---CCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE--eccC
Q 023562 207 ---APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIA 272 (280)
Q Consensus 207 ---~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~ 272 (280)
.......|.|...|+.+-.+..+.||+|+|.+|+.|++.+....++++++..|+|||++++- |.+.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~~ 246 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETIP 246 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcccC
Confidence 11113467888888877653447899999999999999888899999999999999999994 6664
No 163
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.90 E-value=1e-09 Score=101.90 Aligned_cols=100 Identities=21% Similarity=0.263 Sum_probs=70.9
Q ss_pred ccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 159 LVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
..+||+|||+|.++.+|++++.. ++..-|..+.++..|-++- ....+-...-..+|+++++||+|.|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG-----------vpa~~~~~~s~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG-----------VPAMIGVLGSQRLPFPSNAFDMVHC 187 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC-----------cchhhhhhccccccCCccchhhhhc
Confidence 46899999999999999988654 2222345555676665542 1111122234678888899999999
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+.++......+ ..+|-++.|+|||||+++.+-.
T Consensus 188 src~i~W~~~~-g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 188 SRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred ccccccchhcc-cceeehhhhhhccCceEEecCC
Confidence 98876544322 3688999999999999999854
No 164
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.89 E-value=2.2e-08 Score=87.29 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=92.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC---CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~---~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~ 228 (280)
...+.+||||.||.|+.....++... .+|...|+|+..++..++.++..|+ ...++|.++|+.+.. ...
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL-----~~i~~f~~~dAfd~~~l~~l~ 207 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL-----EDIARFEQGDAFDRDSLAALD 207 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC-----ccceEEEecCCCCHhHhhccC
Confidence 35678999999999999888887755 3899999999999999999999877 455699999987652 112
Q ss_pred CcEEEEEccchhhcCChhhH-HHHHHHHHHcCCCCcEEEEEe
Q 023562 229 GRYDVIWVQWCIGHLTDDDF-VSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~-~~~l~~~~r~LkpGG~lii~e 269 (280)
-..++++++..++.++|.++ ...++-+.+++.|||+++.+-
T Consensus 208 p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 208 PAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 35799999999999998765 558999999999999999873
No 165
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.87 E-value=1.5e-08 Score=87.23 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=78.9
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-----CCCCCc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----TPETGR 230 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~~~~~~ 230 (280)
++..+||+|||+|.++..++...+. .|+++|.|+.+|..|.+|....++ ...+..+..+++.- +...++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-----~g~i~v~~~~me~d~~~~~~l~~~~ 222 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-----SGRIEVIHNIMESDASDEHPLLEGK 222 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh-----cCceEEEecccccccccccccccCc
Confidence 3457999999999999999866554 899999999999999999887655 34455554444321 233489
Q ss_pred EEEEEccchhhcCChh--------------------------hHHHHHHHHHHcCCCCcEEEEEec
Q 023562 231 YDVIWVQWCIGHLTDD--------------------------DFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~--------------------------d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|++++|-- |+..+ .+..++.-+.|+|+|||.+++.-+
T Consensus 223 ~dllvsNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 223 IDLLVSNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred eeEEecCCC--cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 999999833 11111 256678888999999999988644
No 166
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.86 E-value=1.2e-08 Score=85.36 Aligned_cols=104 Identities=15% Similarity=0.040 Sum_probs=75.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-C-C--CCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-P--ETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~--~~~~fD 232 (280)
.+.+|||++||+|.++..++.++...|+++|.++.+++.+++++...++ ..+++++++|+.++ . . ....||
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----GEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----cccEEEEehhHHHHHHHhhccCCCce
Confidence 4578999999999999999999888899999999999999999877544 34678999998553 1 1 112478
Q ss_pred EEEccchhhcCChhhHHHHHHHHH--HcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~--r~LkpGG~lii~ 268 (280)
+|+..--+.. ......+..+. .+|+++|++++-
T Consensus 124 vv~~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 124 VIYLDPPFFN---GALQALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred EEEECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEE
Confidence 8887644322 12334555444 468888876653
No 167
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.86 E-value=6.9e-09 Score=97.49 Aligned_cols=102 Identities=18% Similarity=0.209 Sum_probs=74.2
Q ss_pred CccEEEeecCccHHHHHHHHhc-----CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~-----~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
+..|+|+|||+|.++...++.+ ..+|.+||-|+.++...++++..++. ..+|+++.+|++++..+ .++|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----~~~V~vi~~d~r~v~lp-ekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----GDKVTVIHGDMREVELP-EKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----TTTEEEEES-TTTSCHS-S-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----CCeEEEEeCcccCCCCC-Ccee
Confidence 4679999999999988776554 34899999999988877766555444 56799999999999876 6999
Q ss_pred EEEccchhhcCCh-hhHHHHHHHHHHcCCCCcEEE
Q 023562 233 VIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 233 lV~~~~~l~~~~~-~d~~~~l~~~~r~LkpGG~li 266 (280)
+|+|-+. ..+.+ +-....+....+.|||||+++
T Consensus 261 IIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9998632 12222 234678889999999999875
No 168
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.84 E-value=1.3e-08 Score=95.69 Aligned_cols=103 Identities=16% Similarity=0.109 Sum_probs=76.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC----CCCCCc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~ 230 (280)
..++.+|||+|||+|.++..+++.. ..|+++|+|+.|++.|++++..+++ .+++|+.+|+.++ ....++
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGI------ANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeCCHHHHHHHHHhcCCC
Confidence 3455799999999999999988664 4799999999999999999876543 4789999998653 122357
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
||+|++.-.-.-+ ...+++.+.+ ++|+++++++=
T Consensus 363 ~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 363 PDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEEcC
Confidence 9999975331111 1356666554 88999888873
No 169
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.83 E-value=1.6e-08 Score=93.32 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=77.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..++.++ ..|+++|+|+.+++.|+++++..++ .+++|.++|+.++.. ...+||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGL------DNLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHHHHhcCCCCCEEE
Confidence 34689999999999999998765 4799999999999999999877543 378999999876532 124699999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+.---..+. ..+++.+. .++|+++++++=|
T Consensus 306 ~DPPr~G~~----~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 306 VNPPRRGIG----KELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ECCCCCCCc----HHHHHHHH-hcCCCeEEEEEeC
Confidence 874422222 24555554 3799999998744
No 170
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.81 E-value=2e-08 Score=88.82 Aligned_cols=75 Identities=16% Similarity=0.078 Sum_probs=61.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++++. +|+++|+++.|++.+++++.. .+++++++|+.+++.++-.+|.|
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---------~~v~~i~~D~~~~~~~~~~~~~v 109 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---------DNLTIIEGDALKVDLSELQPLKV 109 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---------CceEEEEChhhcCCHHHcCcceE
Confidence 44667999999999999999998876 799999999999999987642 46899999999886542225888
Q ss_pred Eccch
Q 023562 235 WVQWC 239 (280)
Q Consensus 235 ~~~~~ 239 (280)
+++-.
T Consensus 110 v~NlP 114 (272)
T PRK00274 110 VANLP 114 (272)
T ss_pred EEeCC
Confidence 88754
No 171
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.81 E-value=7.7e-08 Score=84.40 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=63.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++++ .+|+++|+++.|++.+++++.. ..+++++++|+.+++.+ +||.|
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--------~~~v~ii~~D~~~~~~~--~~d~V 95 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--------AGNVEIIEGDALKVDLP--EFNKV 95 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--------CCCEEEEEeccccCCch--hceEE
Confidence 3456799999999999999999885 4699999999999999988754 24689999999887654 58999
Q ss_pred Eccchhh
Q 023562 235 WVQWCIG 241 (280)
Q Consensus 235 ~~~~~l~ 241 (280)
+++...+
T Consensus 96 v~NlPy~ 102 (258)
T PRK14896 96 VSNLPYQ 102 (258)
T ss_pred EEcCCcc
Confidence 9986643
No 172
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.80 E-value=1.8e-08 Score=86.28 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=84.2
Q ss_pred ccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CCCCcEEEE
Q 023562 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVI 234 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fDlV 234 (280)
..+||||||.|.+...++++.++ .+.|||+....+..|.+.+...++ .|+.+++.|+..+- +++++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 47999999999999999999887 899999999999999998887643 28999999987652 444699999
Q ss_pred EccchhhcCChh------hHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~------d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+.++.=-+.... -...+++.+.+.|+|||.|.+.
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 988652221110 1257999999999999999986
No 173
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.79 E-value=3e-08 Score=87.64 Aligned_cols=103 Identities=20% Similarity=0.199 Sum_probs=81.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
.+..|||+|||.|.++...++.|..+|.+|+.| +|.+.|+..++.+++ ..++.++.+-++++.++ ++.|+|++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~-----~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNL-----ADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCc-----cceEEEccCccccccCc-hhccEEEe
Confidence 456899999999999998888899999999964 699999999988765 67899999999998876 79999998
Q ss_pred cc-hhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 237 QW-CIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 237 ~~-~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
-- ...-+. +...+-.-.+++.|+|.|..+=
T Consensus 250 EPMG~mL~N-ERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 250 EPMGYMLVN-ERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred ccchhhhhh-HHHHHHHHHHHhhcCCCCcccC
Confidence 62 222223 2334444456699999998764
No 174
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.78 E-value=2.7e-08 Score=85.41 Aligned_cols=94 Identities=21% Similarity=0.240 Sum_probs=60.2
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHH-HHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~-A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
++.+|||+|||+|.++..+++++..+|+++|+++.|+.. .+++..-..+ ...|++ ..+.+++..+-..+|+++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~----~~~ni~--~~~~~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVL----ERTNIR--YVTPADIFPDFATFDVSF 148 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEe----ecCCcc--cCCHhHcCCCceeeeEEE
Confidence 566899999999999999999887789999999988876 3332110000 001222 122222222224788777
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
++.+ ..+..+.+.|+| |.+++
T Consensus 149 iS~~----------~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 149 ISLI----------SILPELDLLLNP-NDLTL 169 (228)
T ss_pred eehH----------hHHHHHHHHhCc-CeEEE
Confidence 7655 246678888888 66554
No 175
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.77 E-value=3.5e-08 Score=90.71 Aligned_cols=111 Identities=17% Similarity=0.137 Sum_probs=88.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD 232 (280)
++.+|||+=|=||.++.+.+..|..+|+.||.|...|+.|++|++-+++. ...+.|+++|+.++- -...+||
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----~~~~~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----GDRHRFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----ccceeeehhhHHHHHHHHHhcCCccc
Confidence 37899999999999999988888878999999999999999999987652 355789999987652 2234999
Q ss_pred EEEcc-chhhcCC------hhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 233 VIWVQ-WCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 233 lV~~~-~~l~~~~------~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+|++- -.+..=+ ..++..++..+.++|+|||.++++-|-
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 99964 1111100 136788999999999999999998664
No 176
>PRK04148 hypothetical protein; Provisional
Probab=98.77 E-value=1e-07 Score=74.63 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=68.3
Q ss_pred CCccEEEeecCccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-CCcEEEE
Q 023562 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~-~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fDlV 234 (280)
++.+|||+|||+|. ++..|.+.+. .|+++|+++..++.++++. +++..+|+.+-.++ -..+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~-------------~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLG-------------LNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhC-------------CeEEECcCCCCCHHHHhcCCEE
Confidence 45789999999996 8888887776 5999999999999987763 56788998775533 2578999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPG 262 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpG 262 (280)
++... +.+++..+.++++.+.-.
T Consensus 82 ysirp-----p~el~~~~~~la~~~~~~ 104 (134)
T PRK04148 82 YSIRP-----PRDLQPFILELAKKINVP 104 (134)
T ss_pred EEeCC-----CHHHHHHHHHHHHHcCCC
Confidence 98765 468888888888865443
No 177
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.77 E-value=3.6e-08 Score=88.67 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=59.2
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcC-CCCCCCCCcceeEEE-ccCCCCC----CCCC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFC-VPLQDFT----PETG 229 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~-~~~~~~~~~~i~~~~-~d~~~~~----~~~~ 229 (280)
...+|||||||+|.+...++.+.+. +++++|+++.+++.|++++..+ ++ ..++++.. .+..++. .+.+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----NGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----cCcEEEEEccchhhhhhcccccCC
Confidence 5679999999999888877766433 7999999999999999999876 44 34566653 3333221 2346
Q ss_pred cEEEEEccchhh
Q 023562 230 RYDVIWVQWCIG 241 (280)
Q Consensus 230 ~fDlV~~~~~l~ 241 (280)
+||+|+|+--++
T Consensus 189 ~fDlivcNPPf~ 200 (321)
T PRK11727 189 RFDATLCNPPFH 200 (321)
T ss_pred ceEEEEeCCCCc
Confidence 899999996544
No 178
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.76 E-value=4.8e-08 Score=86.42 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=79.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~--~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
-.+.+|||+|||+|..+-.+.+.. ..+++++|.|+.|++.++..+..... .....+......+.. +..+.|+
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~-~~~~~DL 105 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN-----NRNAEWRRVLYRDFL-PFPPDDL 105 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc-----cccchhhhhhhcccc-cCCCCcE
Confidence 356799999999998766554432 33899999999999999987765311 011111111111111 1123499
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCCCCC
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGSE 277 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~~~ 277 (280)
|+++++|..+++.....+++.+.+.+.+ .+++.|+-+..||.
T Consensus 106 vi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~ 147 (274)
T PF09243_consen 106 VIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFR 147 (274)
T ss_pred EEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHH
Confidence 9999999999987778899999888776 99999998877763
No 179
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.74 E-value=4.4e-08 Score=84.91 Aligned_cols=105 Identities=18% Similarity=0.161 Sum_probs=78.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-C-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC---CCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~ 229 (280)
..++.+|||.|.|+|.++..|++... . +|..+|+.+..++.|+++++..++ ..++++.+.|+..-.+ ...
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----~~~v~~~~~Dv~~~g~~~~~~~ 112 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----DDNVTVHHRDVCEEGFDEELES 112 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----CTTEEEEES-GGCG--STT-TT
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----CCCceeEecceecccccccccC
Confidence 67889999999999999999987533 2 899999999999999999998766 5689999999964222 126
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcC-CCCcEEEEEecc
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGL-KPGGFFVLKENI 271 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~L-kpGG~lii~e~~ 271 (280)
.+|.|+.-. + +.-.++..+.++| ||||+|++--+|
T Consensus 113 ~~DavfLDl-----p--~Pw~~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 113 DFDAVFLDL-----P--DPWEAIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp SEEEEEEES-----S--SGGGGHHHHHHHE-EEEEEEEEEESS
T ss_pred cccEEEEeC-----C--CHHHHHHHHHHHHhcCCceEEEECCC
Confidence 899998643 3 3337888899999 899999885443
No 180
>PLN02823 spermine synthase
Probab=98.74 E-value=4.9e-08 Score=88.51 Aligned_cols=109 Identities=19% Similarity=0.233 Sum_probs=80.0
Q ss_pred CCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV 234 (280)
.+.+||.+|+|.|..++.+++.. ..+|+.||+++.+++.|++.+....-. -...+++++.+|...+- ...++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~--~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA--FCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc--ccCCceEEEEChhHHHHhhCCCCccEE
Confidence 56799999999999999888753 458999999999999999988642110 11467899999887753 234689999
Q ss_pred Eccchhhc---CChhh--HHHHHH-HHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGH---LTDDD--FVSFFK-RAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~---~~~~d--~~~~l~-~~~r~LkpGG~lii~ 268 (280)
++-.. .. -+... -..|++ .+.+.|+|||++++-
T Consensus 181 i~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 97621 11 00001 146888 899999999998763
No 181
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.74 E-value=1.2e-07 Score=83.05 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=61.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE--
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD-- 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD-- 232 (280)
..++.+|||+|||+|.++..+++++. .|+++|+++.|++.+++++.. ..+++++.+|+..++.+ +||
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--------~~~v~v~~~D~~~~~~~--~~d~~ 95 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--------YERLEVIEGDALKVDLP--DFPKQ 95 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--------CCcEEEEECchhcCChh--HcCCc
Confidence 44567999999999999999998875 599999999999999988753 25688999999887654 566
Q ss_pred -EEEccchh
Q 023562 233 -VIWVQWCI 240 (280)
Q Consensus 233 -lV~~~~~l 240 (280)
+|+++..+
T Consensus 96 ~~vvsNlPy 104 (253)
T TIGR00755 96 LKVVSNLPY 104 (253)
T ss_pred ceEEEcCCh
Confidence 77776553
No 182
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.70 E-value=1.4e-08 Score=92.65 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=96.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++..++|+|||.|.....+..-....+++++.++..+..+.......++ .....+..+|+..-+++++.||.+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l-----~~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYL-----DNKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHh-----hhhcceehhhhhcCCCCccccCcE
Confidence 345568999999999999988877767899999999999988877665443 345566778888888888999999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (280)
.+..+..|.+ +...++++++++++|||+++..|++....
T Consensus 183 ~~ld~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 183 RFLEVVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred EEEeecccCC--cHHHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 9999999999 77799999999999999999999986543
No 183
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.66 E-value=4.6e-08 Score=86.51 Aligned_cols=110 Identities=21% Similarity=0.257 Sum_probs=80.1
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fDl 233 (280)
++.+|||+=|=||.++...+..|..+|+.||.|..+++.+++++..+++. ..+++|++.|+.++- -..++||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD----LDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----CTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHHHHHHhcCCCCCE
Confidence 45799999999999999888777778999999999999999999887651 246889999986531 12369999
Q ss_pred EEcc---chhhcCC-hhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 234 IWVQ---WCIGHLT-DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 234 V~~~---~~l~~~~-~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|++- +.=..+. ..++..++..+.++|+|||.+++.-|
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 9964 1100000 13678899999999999999887655
No 184
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.65 E-value=1.1e-07 Score=84.85 Aligned_cols=78 Identities=14% Similarity=0.066 Sum_probs=63.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+|||+|||+|.++..+++.+. +|+++|+++.|++.+++++...+. ..+++++.+|+..... .+||.|
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~-----~~~v~ii~~Dal~~~~--~~~d~V 105 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPL-----ASKLEVIEGDALKTEF--PYFDVC 105 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCC-----CCcEEEEECCHhhhcc--cccCEE
Confidence 44667999999999999999988754 699999999999999998865322 3578999999977654 368999
Q ss_pred Eccchh
Q 023562 235 WVQWCI 240 (280)
Q Consensus 235 ~~~~~l 240 (280)
+++...
T Consensus 106 vaNlPY 111 (294)
T PTZ00338 106 VANVPY 111 (294)
T ss_pred EecCCc
Confidence 887543
No 185
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.64 E-value=1.9e-07 Score=77.44 Aligned_cols=111 Identities=22% Similarity=0.187 Sum_probs=79.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-c---------EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-E---------VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~---------v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 224 (280)
..++..|||--||+|.+.+..+..+.. . +.|+|+++.+++.|++|+...++ ...+.+.+.|+.++
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----~~~i~~~~~D~~~l 100 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----EDYIDFIQWDAREL 100 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------CGGEEEEE--GGGG
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----CCceEEEecchhhc
Confidence 446679999999999998877655443 3 78999999999999999987655 45689999999999
Q ss_pred CCCCCcEEEEEccchhhc-CCh-----hhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 225 TPETGRYDVIWVQWCIGH-LTD-----DDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 225 ~~~~~~fDlV~~~~~l~~-~~~-----~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+..++++|+|+++--+.. +.. .-+..+++++.++|++...+++.++
T Consensus 101 ~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~ 152 (179)
T PF01170_consen 101 PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN 152 (179)
T ss_dssp GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC
T ss_pred ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
Confidence 855589999999844332 121 1236788999999999666666654
No 186
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=3.3e-08 Score=77.44 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=66.7
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
-.+++++|+|||.|.++....-.....|.|+|+.+++++.++.|..+. ..++++.++|+.++.+..+.||.++
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf-------EvqidlLqcdildle~~~g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF-------EVQIDLLQCDILDLELKGGIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh-------hhhhheeeeeccchhccCCeEeeEE
Confidence 357899999999999997776566669999999999999999998764 5678999999999877778999999
Q ss_pred ccchh
Q 023562 236 VQWCI 240 (280)
Q Consensus 236 ~~~~l 240 (280)
.+--+
T Consensus 120 iNppF 124 (185)
T KOG3420|consen 120 INPPF 124 (185)
T ss_pred ecCCC
Confidence 88554
No 187
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.62 E-value=1.8e-07 Score=82.73 Aligned_cols=109 Identities=19% Similarity=0.261 Sum_probs=83.3
Q ss_pred CCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fDlV 234 (280)
.+.+||-+|.|.|..++.++++. ..+++.||+++..++.+++.+........ ..+++.+..|...+-. ...+||+|
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~--dpRv~i~i~Dg~~~v~~~~~~fDvI 153 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD--DPRVEIIIDDGVEFLRDCEEKFDVI 153 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC--CCceEEEeccHHHHHHhCCCcCCEE
Confidence 34699999999999999999875 34999999999999999999887432111 4778888888877632 22489999
Q ss_pred EccchhhcCCh-hhH--HHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTD-DDF--VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~-~d~--~~~l~~~~r~LkpGG~lii~ 268 (280)
++-..=. ..+ +.+ ..|++.++++|+|+|+++.-
T Consensus 154 i~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 154 IVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 9764322 121 111 58999999999999999876
No 188
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.61 E-value=4e-08 Score=81.73 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=75.2
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-C-C--CCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-P--ETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~--~~~~fD 232 (280)
.+.+|||+-||+|.++...+.+|...|+.||.|+..+...+++++..+. ..++..++.|...+ . . ...+||
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----EDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----CcceeeeccCHHHHHHhhcccCCCce
Confidence 4679999999999999999999999999999999999999999987544 34578888875432 1 1 347999
Q ss_pred EEEccchhhcCChhh-HHHHHHHHH--HcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDD-FVSFFKRAK--VGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d-~~~~l~~~~--r~LkpGG~lii~ 268 (280)
+|++.--... .. +..++..+. .+|+++|++++-
T Consensus 117 iIflDPPY~~---~~~~~~~l~~l~~~~~l~~~~~ii~E 152 (183)
T PF03602_consen 117 IIFLDPPYAK---GLYYEELLELLAENNLLNEDGLIIIE 152 (183)
T ss_dssp EEEE--STTS---CHHHHHHHHHHHHTTSEEEEEEEEEE
T ss_pred EEEECCCccc---chHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 9998744332 12 367888877 789999987663
No 189
>PRK00536 speE spermidine synthase; Provisional
Probab=98.60 E-value=1.6e-07 Score=82.04 Aligned_cols=101 Identities=17% Similarity=0.095 Sum_probs=75.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.+||=+|.|-|..++.++++- .+|+.||+++.+++.+++.++...- .-..++++++.. +.+ ...++||+|
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~--~~~DpRv~l~~~-~~~--~~~~~fDVI 143 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQ-LLD--LDIKKYDLI 143 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHH--hhcCCCEEEeeh-hhh--ccCCcCCEE
Confidence 4567899999999999999999764 4899999999999999997765221 111345555541 211 113689999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++-..+ + ..+++.++++|+|||+++..
T Consensus 144 IvDs~~---~----~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 144 ICLQEP---D----IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred EEcCCC---C----hHHHHHHHHhcCCCcEEEEC
Confidence 976431 1 37999999999999999874
No 190
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.59 E-value=3.5e-07 Score=82.08 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=84.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~fDl 233 (280)
..++..|||==||||.+.+...-.|. ++.|.|++..|++-|+.|++..++ ....+... |++.+++...++|.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i------~~~~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGI------EDYPVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCc------CceeEEEecccccCCCCCCccce
Confidence 56778999999999999887765565 599999999999999999987543 23334445 99999987677999
Q ss_pred EEccchhhcCC-------hhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 234 IWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 234 V~~~~~l~~~~-------~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|++---...-+ ++-+..+++.+.++|++||+++|.-+
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99753221111 12257899999999999999999755
No 191
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.57 E-value=1.2e-07 Score=80.04 Aligned_cols=110 Identities=16% Similarity=0.076 Sum_probs=85.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD 232 (280)
++.+.+|||.+.|-|+.++..++++..+|.-++.++..|+.|+-|--..++ +...++++.+|..+. .+.+.+||
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l----~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSREL----FEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccc----cccccEEecccHHHHHhcCCccccc
Confidence 456889999999999999999999998899999999999988766433322 234689999998775 36678999
Q ss_pred EEEcc-chhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~-~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|+-- -=|.+.+.---..|.++++|+|||||.++..
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHY 244 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHY 244 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEE
Confidence 99843 1223333212368999999999999998875
No 192
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.57 E-value=1.6e-07 Score=86.76 Aligned_cols=99 Identities=16% Similarity=0.204 Sum_probs=77.5
Q ss_pred CccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 158 HLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
..+|||++||+|..+..++... ...|+++|+++.+++.++++++.+++ .++.+.+.|+..+.....+||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~------~~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL------ENEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CceEEEhhhHHHHHhhcCCCCEEEE
Confidence 3589999999999999987653 34799999999999999999877654 2456888888664321357999998
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.- + . ....++..+.+.+++||+++++
T Consensus 132 DP-~---G--s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 132 DP-F---G--SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CC-C---C--CcHHHHHHHHHHhcCCCEEEEE
Confidence 63 2 2 2236888878889999999998
No 193
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.55 E-value=9e-08 Score=83.34 Aligned_cols=112 Identities=21% Similarity=0.229 Sum_probs=78.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCC-cEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETG-RYD 232 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~-~fD 232 (280)
.++.+||-+|.|.|..+..+++.. ..+|+.||+++.+++.|++.+...... ....+++++..|...+- ...+ +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCccc
Confidence 367899999999999999988654 348999999999999999987642110 11457889999876652 2224 899
Q ss_pred EEEccchhhcCChhh--HHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~~~l~~~~~~d--~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|++-..-...+... -..+++.+++.|+|||++++-.
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 999643211111111 1589999999999999998853
No 194
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.53 E-value=1.8e-07 Score=78.67 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=72.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++..|+|+-||.|.++..++..+ ...|.++|++|.+++..++++..+++ ...+..+++|..++.. .+.||-|
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----~~~i~~~~~D~~~~~~-~~~~drv 173 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----ENRIEVINGDAREFLP-EGKFDRV 173 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------TTTEEEEES-GGG----TT-EEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----CCeEEEEcCCHHHhcC-ccccCEE
Confidence 467899999999999999998733 34799999999999999999988765 4568899999988865 5899999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (280)
+++..- ....|+..+.+++++||++-
T Consensus 174 im~lp~------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLPE------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--TS------SGGGGHHHHHHHEEEEEEEE
T ss_pred EECChH------HHHHHHHHHHHHhcCCcEEE
Confidence 987541 11268888999999999875
No 195
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.53 E-value=6.6e-07 Score=74.38 Aligned_cols=96 Identities=22% Similarity=0.232 Sum_probs=77.3
Q ss_pred cEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccc
Q 023562 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~ 238 (280)
+++|+|+|.|.-++.++-..++ +++.+|.+.+=+...+......++ .|+++++..+++ .....+||+|++.-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~-~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL------SNVEVINGRAEE-PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC------CCEEEEEeeecc-cccCCCccEEEeeh
Confidence 7999999999999988877776 799999999988888877766554 579999999888 33347999999987
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+- .+..++.-+...+++||.+++.
T Consensus 124 v~------~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 124 VA------PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp SS------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred hc------CHHHHHHHHHHhcCCCCEEEEE
Confidence 63 4568999999999999988875
No 196
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.53 E-value=3.1e-07 Score=84.19 Aligned_cols=98 Identities=17% Similarity=0.100 Sum_probs=70.5
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-----------
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----------- 227 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----------- 227 (280)
.+|||++||+|.++..+++. ...|+++|+|+.|++.|++++..+++ .+++|+.+|+.++...
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNI------DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 47999999999999977755 45799999999999999999877643 3688999998764210
Q ss_pred -----CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 228 -----~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
...||+|+..-- .-. -...+++.+.+ |+++++++=|
T Consensus 272 ~~~~~~~~~d~v~lDPP--R~G--~~~~~l~~l~~---~~~ivYvsC~ 312 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPP--RAG--LDPDTCKLVQA---YERILYISCN 312 (353)
T ss_pred ccccccCCCCEEEECCC--CCC--CcHHHHHHHHc---CCcEEEEEcC
Confidence 013788887533 111 12355555544 7888888733
No 197
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.52 E-value=2.9e-07 Score=84.60 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=70.6
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CC---------
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PE--------- 227 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~--------- 227 (280)
.+|||++||+|.++..+++. ..+|+++|+|+.+++.|++++..+++ .+++|+.+|+.++- ..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI------DNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHhhcccccccc
Confidence 47999999999999977754 55799999999999999999877543 37899999986641 10
Q ss_pred -----CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 228 -----~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
..+||+|+..--- .. -...+++.+.+ |+++++++=
T Consensus 281 ~~~~~~~~~D~v~lDPPR--~G--~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPR--AG--LDDETLKLVQA---YERILYISC 320 (362)
T ss_pred cccccCCCCCEEEECCCC--CC--CcHHHHHHHHc---cCCEEEEEe
Confidence 1258999876331 11 12355555554 688888873
No 198
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.49 E-value=1.4e-07 Score=82.06 Aligned_cols=117 Identities=18% Similarity=0.282 Sum_probs=77.9
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCC-------------CCCCC---------Ccc
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH-------------MAPDM---------HKA 213 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~-------------~~~~~---------~~~ 213 (280)
.++.++||||||+-..-..-+...+.+|+..|+++..++..++.+...+- ..... +..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 35679999999996554433445667999999999999988887765321 00000 111
Q ss_pred e-eEEEccCCCCCC-C-----CCcEEEEEccchhhcCCh--hhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 214 T-NFFCVPLQDFTP-E-----TGRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 214 i-~~~~~d~~~~~~-~-----~~~fDlV~~~~~l~~~~~--~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+ .++.+|+...++ . +.+||+|++.++++.+.. +++...++++.++|||||.|++..-+.
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 2 366778876542 2 135999999999987754 677899999999999999999976543
No 199
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.48 E-value=5.1e-07 Score=86.49 Aligned_cols=107 Identities=16% Similarity=0.051 Sum_probs=81.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDl 233 (280)
....+||||||.|.++..++...++ .+.|+|++...+..+..+....++ .|+.+++.|+..+. ++++++|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l------~N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI------TNFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC------CeEEEEcCCHHHHHHhcCcccccE
Confidence 3557999999999999999998887 899999999999888777655443 46777777764332 44578999
Q ss_pred EEccchhhcCChh----h--HHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IWVQWCIGHLTDD----D--FVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~~~~~l~~~~~~----d--~~~~l~~~~r~LkpGG~lii~e 269 (280)
|++++.=-+.... . -..+++.+.+.|+|||.|.+..
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 9987653221110 1 2579999999999999998863
No 200
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.48 E-value=1.1e-06 Score=83.22 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=81.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f 231 (280)
+.++.+|||++||+|.-+..+++.... .|+++|+++.-++..++++...|+ .++.+...|...+. ..++.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------SNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCchhhhhhhchhhc
Confidence 457789999999999999999887432 799999999999999999988654 45777777876653 223679
Q ss_pred EEEE----cc--chhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEE
Q 023562 232 DVIW----VQ--WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 232 DlV~----~~--~~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~ 268 (280)
|.|+ |+ .++..-++ .+ ...+|..+.++|||||+++.+
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999 44 33333221 11 267899999999999998654
No 201
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.47 E-value=7.7e-07 Score=77.94 Aligned_cols=109 Identities=19% Similarity=0.252 Sum_probs=81.2
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCc---CC-------------------------C--
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP---EN-------------------------H-- 205 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~---~~-------------------------~-- 205 (280)
..+.+||--|||.|+++..++.+|+. +.+.|.|--|+=..+-.+.. .+ +
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 34579999999999999999999885 99999999997655442221 00 0
Q ss_pred ----CCCCCCcceeEEEccCCCCCCCC---CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 206 ----MAPDMHKATNFFCVPLQDFTPET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 206 ----~~~~~~~~i~~~~~d~~~~~~~~---~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
.......+.....+|+.++-.++ ++||+|++++.+.-.. ++...|+.+.++|||||+.+=
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~--Ni~~Yi~tI~~lLkpgG~WIN 200 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE--NIIEYIETIEHLLKPGGYWIN 200 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH--HHHHHHHHHHHHhccCCEEEe
Confidence 00111345667777877765443 7999999998887655 888999999999999997653
No 202
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.45 E-value=6.4e-06 Score=74.19 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=80.4
Q ss_pred CCccEEEeecCccHHHHHHHHhc-----CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC----CC-
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TP- 226 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-----~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~- 226 (280)
++..++|+|||.|.-+..|++.. ...++.+|+|..+|+.+.+++....+ ....+.-+++|..+. +.
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~----p~l~v~~l~gdy~~~l~~l~~~ 151 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF----SHVRCAGLLGTYDDGLAWLKRP 151 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC----CCeEEEEEEecHHHHHhhcccc
Confidence 45689999999999888777653 22699999999999999998872211 123344477777552 21
Q ss_pred -CCCcEEEEEcc-chhhcCChhhHHHHHHHHHH-cCCCCcEEEEE
Q 023562 227 -ETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLK 268 (280)
Q Consensus 227 -~~~~fDlV~~~-~~l~~~~~~d~~~~l~~~~r-~LkpGG~lii~ 268 (280)
......+++.- .+|..+++++...+++++++ .|+|||.|++.
T Consensus 152 ~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 152 ENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred cccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 11234666554 68999999999999999999 99999999885
No 203
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.44 E-value=4.5e-06 Score=64.91 Aligned_cols=101 Identities=22% Similarity=0.231 Sum_probs=71.4
Q ss_pred EEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcc-eeEEEccCCC--CCCCC-CcEEEE
Q 023562 161 ALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCVPLQD--FTPET-GRYDVI 234 (280)
Q Consensus 161 VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~-i~~~~~d~~~--~~~~~-~~fDlV 234 (280)
++|+|||+|... .+..... ..++++|+++.++..++...... ... +.+...+... ++... ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA-------GLGLVDFVVADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc-------CCCceEEEEeccccCCCCCCCCCceeEE
Confidence 999999999976 3333322 25888999999999865544221 111 5777777765 55554 489999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.+....++.. ....+..+.+.|+|+|.+++.+...
T Consensus 124 ~~~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 124 ISLLVLHLLP---PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eeeeehhcCC---HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 4334444433 6689999999999999999987764
No 204
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.39 E-value=1.1e-06 Score=79.42 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=91.9
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
..+.+|+|.=||.|.+++.++..+...|+++|+||.+++..++++..+++ ...+..+++|..+.....+.+|-|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----EGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----cceeeEEeccHHHhhhccccCCEEE
Confidence 35789999999999999999988776799999999999999999998766 3448899999988875557899999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (280)
+...- ....++..+.+.+++||++-+.+++..+.
T Consensus 262 m~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 262 MGLPK------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred eCCCC------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 88652 33478888999999999999999886543
No 205
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=5.2e-06 Score=70.21 Aligned_cols=114 Identities=21% Similarity=0.290 Sum_probs=87.0
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEE
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~ 217 (280)
.++..++.. -.+.++||+|.=||+-+..++...+. +|+++|+++...+.+.+..+..+. ...++++
T Consensus 63 ~fl~~li~~-------~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~i 130 (237)
T KOG1663|consen 63 QFLQMLIRL-------LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITFI 130 (237)
T ss_pred HHHHHHHHH-------hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeeee
Confidence 455555542 25679999999999998888876555 899999999999999888877655 6789999
Q ss_pred EccCCCC------CCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 218 CVPLQDF------TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 218 ~~d~~~~------~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.++..+. ..+.++||+++.-.- .+.....+.++.+++|+||+|++ +|+
T Consensus 131 ~g~a~esLd~l~~~~~~~tfDfaFvDad-----K~nY~~y~e~~l~Llr~GGvi~~-DNv 184 (237)
T KOG1663|consen 131 EGPALESLDELLADGESGTFDFAFVDAD-----KDNYSNYYERLLRLLRVGGVIVV-DNV 184 (237)
T ss_pred ecchhhhHHHHHhcCCCCceeEEEEccc-----hHHHHHHHHHHHhhcccccEEEE-ecc
Confidence 9876542 134579999986422 23556899999999999999865 554
No 206
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=4.2e-06 Score=70.90 Aligned_cols=97 Identities=25% Similarity=0.268 Sum_probs=77.5
Q ss_pred CccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
+.+++|||+|.|.-+..++-..++ +|+.+|...+=+.+.+....+.++ .|++++++.++++......||+|++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L------~nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL------ENVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC------CCeEEehhhHhhcccccccCcEEEe
Confidence 579999999999999987744444 799999999988888877776654 5799999999998744211999998
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (280)
.-+- .+..+..-+...+++||.++
T Consensus 142 RAva------~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 142 RAVA------SLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ehcc------chHHHHHHHHHhcccCCcch
Confidence 8652 55678888999999988864
No 207
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.7e-06 Score=71.98 Aligned_cols=105 Identities=19% Similarity=0.185 Sum_probs=76.9
Q ss_pred CCCccEEEeecCccHHHHHHHHh-cCC--cEEEEeCCHHHHHHHHHHcCcCCC----CCCCCCcceeEEEccCCCCCCCC
Q 023562 156 NQHLVALDCGSGIGRITKNLLIR-YFN--EVDLLEPVSHFLDAARESLAPENH----MAPDMHKATNFFCVPLQDFTPET 228 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~-~~~--~v~~vD~S~~~l~~A~~~~~~~~~----~~~~~~~~i~~~~~d~~~~~~~~ 228 (280)
.++.+.||+|.|+|+++..++.. +.. ..+|||.-++.++.+++++...-- ...-...+..++.+|......+.
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~ 160 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQ 160 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCcc
Confidence 46789999999999999877644 222 349999999999999998865310 00001245778888887776666
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+||.|++--. ....-+++...|+|||.+++-
T Consensus 161 a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 161 APYDAIHVGAA--------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCcceEEEccC--------ccccHHHHHHhhccCCeEEEe
Confidence 89999998733 225667788889999988874
No 208
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=2.5e-06 Score=69.49 Aligned_cols=103 Identities=17% Similarity=0.064 Sum_probs=76.8
Q ss_pred CccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
+.-++|+|||+|..+..|++.... .+.++|+|+.+++..++.+..+ ..+++.++.|+.+--.+ ++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-------~~~~~~V~tdl~~~l~~-~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-------RVHIDVVRTDLLSGLRN-ESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-------CCccceeehhHHhhhcc-CCccEEE
Confidence 567999999999999988776332 6889999999999988887765 45678888888664333 7999998
Q ss_pred ccchhhcCCh-------------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 236 VQWCIGHLTD-------------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~~~~~-------------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+--.---++ +-...++..+..+|.|.|++++.
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 7632111111 11467888888999999999885
No 209
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.32 E-value=3.2e-06 Score=69.86 Aligned_cols=106 Identities=16% Similarity=0.094 Sum_probs=79.3
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCC-CCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPE-TGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~-~~~fDl 233 (280)
.+.++||+=+|+|.++...+.+|...++.||.+...+...++|+...+. ..+..++..|...+ ... .++||+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----~~~~~~~~~da~~~L~~~~~~~~FDl 117 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----EGEARVLRNDALRALKQLGTREPFDL 117 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----ccceEEEeecHHHHHHhcCCCCcccE
Confidence 5689999999999999999999999999999999999999999877543 45677888887754 122 235999
Q ss_pred EEccchhhcCChhhHHHHHHH--HHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKR--AKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~--~~r~LkpGG~lii~ 268 (280)
|+.---++. .--+....+.. -..+|+|+|.+++-
T Consensus 118 VflDPPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 118 VFLDPPYAK-GLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred EEeCCCCcc-chhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 998755441 10111223333 45789999999885
No 210
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.27 E-value=1.8e-06 Score=79.40 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=79.7
Q ss_pred CccEEEeecCccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-CCCcEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~--~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fDlV 234 (280)
+.+|||+.||+|..+..++.+ +...|+++|+|+.+++.+++|++.++. .++.+.+.|+..+-. ...+||+|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~~l~~~~~~fDvI 118 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAANVLRYRNRKFHVI 118 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHHHHHHhCCCCCEE
Confidence 358999999999999999987 567899999999999999999977543 257788888876531 12579999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
...- +. ....++..+.+.+++||+++++
T Consensus 119 dlDP-fG-----s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 119 DIDP-FG-----TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EeCC-CC-----CcHHHHHHHHHhcccCCEEEEE
Confidence 8854 32 2237999999999999999998
No 211
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.19 E-value=3.5e-06 Score=68.98 Aligned_cols=100 Identities=15% Similarity=0.069 Sum_probs=80.1
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccc
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~ 238 (280)
..+.|+|+|+|.++. ++.+...+|.+++.+|.-.++|++++.-.| ..+++++.+|+.++.+ ...|+|+|-.
T Consensus 34 d~~~DLGaGsGiLs~-~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g------~~n~evv~gDA~~y~f--e~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSV-VAAHAAERVIAIEKDPKRARLAEENLHVPG------DVNWEVVVGDARDYDF--ENADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHH-HHHhhhceEEEEecCcHHHHHhhhcCCCCC------CcceEEEecccccccc--cccceeHHHH
Confidence 578999999999998 666778899999999999999999976544 3789999999999887 3689999864
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
.=--+-++....+++.+...||-++.++=
T Consensus 105 lDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 105 LDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 31122234567889999999999998764
No 212
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.19 E-value=3.8e-06 Score=74.76 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=60.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCC--
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PET-- 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~-- 228 (280)
+.++..++|++||.|..+..+++... ..|+|+|.++.|++.|++++.. ..++.++++++.++. .+.
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------CCcEEEEeCCHHHHHHHHHcCC
Confidence 45667999999999999999998864 3799999999999999988753 246899999988763 211
Q ss_pred CcEEEEEcc
Q 023562 229 GRYDVIWVQ 237 (280)
Q Consensus 229 ~~fDlV~~~ 237 (280)
.+||.|++.
T Consensus 89 ~~vDgIl~D 97 (296)
T PRK00050 89 GKVDGILLD 97 (296)
T ss_pred CccCEEEEC
Confidence 279999865
No 213
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.15 E-value=1e-05 Score=80.55 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=77.9
Q ss_pred CCccEEEeecCccHHHHHHHHhc-------------------------------------------CCcEEEEeCCHHHH
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-------------------------------------------FNEVDLLEPVSHFL 193 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-------------------------------------------~~~v~~vD~S~~~l 193 (280)
++..++|-+||+|.+.+..+... ...++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 45789999999999987765420 01589999999999
Q ss_pred HHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC--CCcEEEEEccchhh-cC-ChhhHHHHHHHHHHcCC---CCcEEE
Q 023562 194 DAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQWCIG-HL-TDDDFVSFFKRAKVGLK---PGGFFV 266 (280)
Q Consensus 194 ~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fDlV~~~~~l~-~~-~~~d~~~~l~~~~r~Lk---pGG~li 266 (280)
+.|++|+...|+ ...++|.++|+.+++.. .++||+|+++--+. .+ ...++..+++.+.+.++ +|+.++
T Consensus 270 ~~A~~N~~~~g~-----~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 270 QAARKNARRAGV-----AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred HHHHHHHHHcCC-----CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 999999988765 45689999999887543 25799999994322 22 22455666666666555 888776
Q ss_pred EE
Q 023562 267 LK 268 (280)
Q Consensus 267 i~ 268 (280)
+.
T Consensus 345 ll 346 (702)
T PRK11783 345 LF 346 (702)
T ss_pred EE
Confidence 54
No 214
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.14 E-value=2.6e-06 Score=74.20 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=76.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
.+..++|+|||.|-... ..-...+.+.|++...+..++..-. .....+|+..++..+.+||.+++
T Consensus 45 ~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~~~------------~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRSGG------------DNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred CcceeeecccCCcccCc---CCCcceeeecchhhhhccccccCCC------------ceeehhhhhcCCCCCCccccchh
Confidence 36689999999996543 1122269999999999887765422 14677898888888899999999
Q ss_pred cchhhcCChhhH-HHHHHHHHHcCCCCcEEEEE
Q 023562 237 QWCIGHLTDDDF-VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 237 ~~~l~~~~~~d~-~~~l~~~~r~LkpGG~lii~ 268 (280)
..++||+..... ..+++++.+.|+|||...+.
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 999999987544 67999999999999987765
No 215
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=8.8e-06 Score=70.80 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=63.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCC-cEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-RYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~fDl 233 (280)
..++..|||||+|.|.+|..|++++.. |+++|+++.+++..++.... ..+++.+.+|+-.++++.- .++.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~l~~~L~~~~~~--------~~n~~vi~~DaLk~d~~~l~~~~~ 98 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRRLAEVLKERFAP--------YDNLTVINGDALKFDFPSLAQPYK 98 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHHHHHHHHHhccc--------ccceEEEeCchhcCcchhhcCCCE
Confidence 445779999999999999999988775 99999999999999998764 4679999999988876522 5788
Q ss_pred EEccch
Q 023562 234 IWVQWC 239 (280)
Q Consensus 234 V~~~~~ 239 (280)
|+++--
T Consensus 99 vVaNlP 104 (259)
T COG0030 99 VVANLP 104 (259)
T ss_pred EEEcCC
Confidence 887744
No 216
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=1.3e-05 Score=75.16 Aligned_cols=104 Identities=23% Similarity=0.216 Sum_probs=76.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC---CCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~f 231 (280)
..++.+|||+=||.|.++..++.+ ..+|+|+|+++.+++.|+++++.+++ .|+.|..++.+++... ...+
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i------~N~~f~~~~ae~~~~~~~~~~~~ 363 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGI------DNVEFIAGDAEEFTPAWWEGYKP 363 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEeCCHHHHhhhccccCCC
Confidence 345678999999999999999855 45799999999999999999998765 4699999999887533 2478
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|.|+..--=.-+. ..+++.+.+ ++|-.+++++=|
T Consensus 364 d~VvvDPPR~G~~----~~~lk~l~~-~~p~~IvYVSCN 397 (432)
T COG2265 364 DVVVVDPPRAGAD----REVLKQLAK-LKPKRIVYVSCN 397 (432)
T ss_pred CEEEECCCCCCCC----HHHHHHHHh-cCCCcEEEEeCC
Confidence 9998752211111 144444443 467777777633
No 217
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.08 E-value=2.2e-05 Score=75.79 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=51.8
Q ss_pred CCccEEEeecCccHHHHHHHHhcC---------CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC---
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--- 224 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~---------~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--- 224 (280)
...+|||.|||+|.+...++.+.. .+++++|+++..++.++.++...+. ..+++.+.|....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------~~~~i~~~d~l~~~~~ 104 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------LEINVINFNSLSYVLL 104 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------CCceeeeccccccccc
Confidence 446899999999999998876532 2689999999999999988765321 1223333332211
Q ss_pred --CCCCCcEEEEEcc
Q 023562 225 --TPETGRYDVIWVQ 237 (280)
Q Consensus 225 --~~~~~~fDlV~~~ 237 (280)
....+.||+|+.+
T Consensus 105 ~~~~~~~~fD~IIgN 119 (524)
T TIGR02987 105 NIESYLDLFDIVITN 119 (524)
T ss_pred ccccccCcccEEEeC
Confidence 1112589999988
No 218
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.08 E-value=1.7e-05 Score=68.59 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=62.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.+++..|||+|.|||.++..+++.+.. |.++|+++.|+....++...... .....++.+|+-..+.+ .||.+
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~kk-VvA~E~Dprmvael~krv~gtp~-----~~kLqV~~gD~lK~d~P--~fd~c 127 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGKK-VVAVEIDPRMVAELEKRVQGTPK-----SGKLQVLHGDFLKTDLP--RFDGC 127 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCe-EEEEecCcHHHHHHHHHhcCCCc-----cceeeEEecccccCCCc--cccee
Confidence 567789999999999999999988775 99999999999999999876422 35688899998766543 78999
Q ss_pred Ecc
Q 023562 235 WVQ 237 (280)
Q Consensus 235 ~~~ 237 (280)
+++
T Consensus 128 VsN 130 (315)
T KOG0820|consen 128 VSN 130 (315)
T ss_pred ecc
Confidence 975
No 219
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.08 E-value=2.1e-06 Score=69.66 Aligned_cols=72 Identities=18% Similarity=0.345 Sum_probs=53.1
Q ss_pred cEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--CCCc-EEEEEc
Q 023562 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGR-YDVIWV 236 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~-fDlV~~ 236 (280)
.|+|+.||.|..++.+++. +.+|+++|+++..++.|+.++.-.|. ..+++|+++|+.++.. .... ||+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv-----~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGV-----ADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 5899999999999999966 55799999999999999999987654 5789999999876531 1112 899995
Q ss_pred c
Q 023562 237 Q 237 (280)
Q Consensus 237 ~ 237 (280)
+
T Consensus 76 S 76 (163)
T PF09445_consen 76 S 76 (163)
T ss_dssp -
T ss_pred C
Confidence 5
No 220
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.07 E-value=1.1e-06 Score=72.90 Aligned_cols=97 Identities=22% Similarity=0.199 Sum_probs=58.7
Q ss_pred CCccEEEeecCccHHHHHHHHhc--CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC------C--C
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------T--P 226 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~--~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~------~--~ 226 (280)
++.+|||+||++|.++..++++. ...|.++|+.+.- . ..++.++++|+.+. . .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~-----------~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------P-----------LQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S------------TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc------c-----------ccceeeeecccchhhHHHhhhhhc
Confidence 45899999999999999998887 3489999987650 0 12233334443221 1 1
Q ss_pred --CCCcEEEEEccchhhcCCh---------hhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 227 --ETGRYDVIWVQWCIGHLTD---------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 227 --~~~~fDlV~~~~~l~~~~~---------~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
..++||+|+|-.+...-.. .-....+.-+.+.|+|||.+++.-.
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 1258999998763221111 1234556666788999999888643
No 221
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.07 E-value=1.5e-05 Score=71.73 Aligned_cols=110 Identities=18% Similarity=0.086 Sum_probs=68.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHh--------cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR--------YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~--------~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 226 (280)
..++.+|+|-+||+|.+...+.+. ...++.|+|+++.++..|+.++.-.+.. ..+..+...|.-..+.
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----~~~~~i~~~d~l~~~~ 119 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----NSNINIIQGDSLENDK 119 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----CBGCEEEES-TTTSHS
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----cccccccccccccccc
Confidence 556678999999999998887763 2238999999999999998765432210 1223467777544332
Q ss_pred C--CCcEEEEEccchhhcC--Ch-----------------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 227 E--TGRYDVIWVQWCIGHL--TD-----------------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 227 ~--~~~fDlV~~~~~l~~~--~~-----------------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
. ..+||+|+++--+... .. ..--.|+..+.+.|++||.+.+.
T Consensus 120 ~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 120 FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 2 3689999988332221 00 01125899999999999986554
No 222
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.04 E-value=2.7e-05 Score=64.30 Aligned_cols=100 Identities=19% Similarity=0.083 Sum_probs=76.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.-.+++|||+|+|.|..++..+..+...|...|+.+..+...+-|.+.+ +.++.+...|+.. ++..||+|
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~an-------gv~i~~~~~d~~g---~~~~~Dl~ 146 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAAN-------GVSILFTHADLIG---SPPAFDLL 146 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhc-------cceeEEeeccccC---CCcceeEE
Confidence 3467899999999999999888888889999999999998888888776 4568888888766 34689999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
+...++..-+ .-..++. +.+.|+..|..++
T Consensus 147 LagDlfy~~~--~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 147 LAGDLFYNHT--EADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred EeeceecCch--HHHHHHH-HHHHHHhCCCEEE
Confidence 9998764333 4446777 5555555554444
No 223
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.03 E-value=3.1e-05 Score=72.17 Aligned_cols=105 Identities=16% Similarity=0.285 Sum_probs=87.7
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccc
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~ 238 (280)
.++|-+|||.-.++..+.+-++..|+-+|+|+..++....+.... .....+...|+....+++++||+|+.-.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-------~~~~~~~~~d~~~l~fedESFdiVIdkG 122 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-------RPEMQMVEMDMDQLVFEDESFDIVIDKG 122 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-------CcceEEEEecchhccCCCcceeEEEecC
Confidence 389999999999999999889999999999999999988766432 4568899999999999999999999988
Q ss_pred hhhcCChhh--------HHHHHHHHHHcCCCCcEEEEEec
Q 023562 239 CIGHLTDDD--------FVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 239 ~l~~~~~~d--------~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.++++-.++ ....+.++.++|+|||+++...-
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 887754322 24568899999999999877644
No 224
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.03 E-value=3e-06 Score=70.42 Aligned_cols=113 Identities=20% Similarity=0.190 Sum_probs=79.4
Q ss_pred chHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeE
Q 023562 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (280)
Q Consensus 137 ~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~ 216 (280)
.+.+..++++.-.-+.+ ...+.++||+|+|.|.++..++ ..+.+|.+.+.|..|+...+.+.-
T Consensus 93 fSe~QF~klL~i~~p~w-~~~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk~y--------------- 155 (288)
T KOG3987|consen 93 FSEEQFRKLLVIGGPAW-GQEPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKKNY--------------- 155 (288)
T ss_pred ecHHHHHHHHhcCCCcc-CCCCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhcCC---------------
Confidence 34444455543211211 3456799999999999999775 556679999999999998776421
Q ss_pred EEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCC-CcEEEEE
Q 023562 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP-GGFFVLK 268 (280)
Q Consensus 217 ~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~Lkp-GG~lii~ 268 (280)
-+....++...+-+||+|.|-+.+.... +.-++++.+..+|+| +|.++++
T Consensus 156 nVl~~~ew~~t~~k~dli~clNlLDRc~--~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 156 NVLTEIEWLQTDVKLDLILCLNLLDRCF--DPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ceeeehhhhhcCceeehHHHHHHHHhhc--ChHHHHHHHHHHhccCCCcEEEE
Confidence 1122233332345899999999998777 555899999999999 8888774
No 225
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.97 E-value=5.7e-05 Score=66.40 Aligned_cols=100 Identities=12% Similarity=0.120 Sum_probs=73.4
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCC---CcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~f 231 (280)
..++..|||+|+|+|.++..|++.+ .+++++|+++.+++..++++.. ..+++++.+|+..+.... ...
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~--------~~~~~vi~~D~l~~~~~~~~~~~~ 98 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS--------NPNVEVINGDFLKWDLYDLLKNQP 98 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT--------CSSEEEEES-TTTSCGGGHCSSSE
T ss_pred CCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh--------cccceeeecchhccccHHhhcCCc
Confidence 4467899999999999999999887 6799999999999999998874 467999999999987553 356
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCC---CcEEEEE
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKP---GGFFVLK 268 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~Lkp---GG~lii~ 268 (280)
..|+++-.. +++. .++.++...-+. ...+++.
T Consensus 99 ~~vv~NlPy-~is~----~il~~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 99 LLVVGNLPY-NISS----PILRKLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp EEEEEEETG-TGHH----HHHHHHHHHGGGCEEEEEEEEE
T ss_pred eEEEEEecc-cchH----HHHHHHhhcccccccceEEEEe
Confidence 777777554 4432 455555443333 3444443
No 226
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.93 E-value=4.1e-05 Score=60.87 Aligned_cols=105 Identities=16% Similarity=0.185 Sum_probs=67.1
Q ss_pred CCCccEEEeecCccHHHHHHHH-----hcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCc
Q 023562 156 NQHLVALDCGSGIGRITKNLLI-----RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~-----~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 230 (280)
.+..+|+|+|||.|+++..++. .....|+++|.++..++.+.++....+. ....+..+...++.+... ...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGS---DLEKRLSFIQGDIADESS-SDP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcc---hhhccchhhccchhhhcc-cCC
Confidence 4567999999999999998887 4333899999999999999888765431 112456666666654432 245
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
.++++.-..=.-++ ..+++.+.+ |+-.+++.=.|
T Consensus 100 ~~~~vgLHaCG~Ls----~~~l~~~~~---~~~~~l~~vpC 133 (141)
T PF13679_consen 100 PDILVGLHACGDLS----DRALRLFIR---PNARFLVLVPC 133 (141)
T ss_pred CeEEEEeecccchH----HHHHHHHHH---cCCCEEEEcCC
Confidence 67776533322222 245555544 55544444333
No 227
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.92 E-value=6.4e-05 Score=63.01 Aligned_cols=104 Identities=20% Similarity=0.180 Sum_probs=80.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fDl 233 (280)
.++.|||++|-|-|.+.-.+-++-+..-..++..+..++..+...-.. ..++....+-.++. .++++.||-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------k~nViil~g~WeDvl~~L~d~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------KENVIILEGRWEDVLNTLPDKHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------ccceEEEecchHhhhccccccCcce
Confidence 467899999999999988666666668889999999999998876553 45677777766554 245688999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+--..-.+- +|+..+.+.+.++|||+|++-+-
T Consensus 173 I~yDTy~e~y--Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 173 IYYDTYSELY--EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred eEeechhhHH--HHHHHHHHHHhhhcCCCceEEEe
Confidence 9865332332 48889999999999999998664
No 228
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.92 E-value=3.1e-05 Score=65.52 Aligned_cols=117 Identities=17% Similarity=0.136 Sum_probs=66.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCC---CCCCCCCcceeEEEccCCCCCCC---
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPEN---HMAPDMHKATNFFCVPLQDFTPE--- 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~---~~~~~~~~~i~~~~~d~~~~~~~--- 227 (280)
..+....+|+|||.|......+.. ++....|||+.+...+.|+....... .........+++..+|+.+.+..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 556789999999999998766544 55579999999998887765332100 00011134677888887653211
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
-...|+|+++... ++ +++...+.+....||+|-+|+-...+...
T Consensus 120 ~s~AdvVf~Nn~~--F~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 120 WSDADVVFVNNTC--FD-PDLNLALAELLLELKPGARIISTKPFCPR 163 (205)
T ss_dssp GHC-SEEEE--TT--T--HHHHHHHHHHHTTS-TT-EEEESS-SS-T
T ss_pred hcCCCEEEEeccc--cC-HHHHHHHHHHHhcCCCCCEEEECCCcCCC
Confidence 0357999998653 33 46767778888899999988776665443
No 229
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=0.00019 Score=65.86 Aligned_cols=108 Identities=22% Similarity=0.191 Sum_probs=81.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC---cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~---~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~ 228 (280)
+.++.+|||+.+++|.=+.++++.... .|+++|.|+.=++..++++...|. .++.....|...++ ...
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------RNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------CceEEEeccccccccccccc
Confidence 677899999999999999999887543 369999999999999999988765 34667777765443 222
Q ss_pred CcEEEEEc----c--chhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEE
Q 023562 229 GRYDVIWV----Q--WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 229 ~~fDlV~~----~--~~l~~~~~-------~d-------~~~~l~~~~r~LkpGG~lii~ 268 (280)
++||.|++ + .++..-++ .+ ...+|..+.+.|||||.++.+
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 36999982 2 44432221 11 357899999999999999875
No 230
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.91 E-value=4.8e-05 Score=64.06 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=70.9
Q ss_pred hHHHHHHHHhccCCCc-cCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeE
Q 023562 138 SEAFLQMLLSDRFPNA-RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (280)
Q Consensus 138 ~~~~l~~~l~~~l~~~-~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~ 216 (280)
+..++...+....... ......++|||||=+......- ...+ .|+.+|+++ ..-.+
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~-~~~f-dvt~IDLns---------------------~~~~I 87 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST-SGWF-DVTRIDLNS---------------------QHPGI 87 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccc-cCce-eeEEeecCC---------------------CCCCc
Confidence 3445555554432211 1123479999999755433321 1234 499999864 11233
Q ss_pred EEccCCCCCC---CCCcEEEEEccchhhcCChhh-HHHHHHHHHHcCCCCcE-----EEEE
Q 023562 217 FCVPLQDFTP---ETGRYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGF-----FVLK 268 (280)
Q Consensus 217 ~~~d~~~~~~---~~~~fDlV~~~~~l~~~~~~d-~~~~l~~~~r~LkpGG~-----lii~ 268 (280)
.+.|+-+.|. +.++||+|.++.||.++|++. .-..++++.+.|+|+|. ++++
T Consensus 88 ~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV 148 (219)
T PF11968_consen 88 LQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV 148 (219)
T ss_pred eeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE
Confidence 5566655543 357999999999999999754 45799999999999999 7776
No 231
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.89 E-value=2e-05 Score=72.19 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=45.2
Q ss_pred cEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC
Q 023562 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 224 (280)
+|||+-||.|.++..++.. +.+|+|||+++.+++.|++++..+++ .|++|..++.+++
T Consensus 199 ~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i------~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGI------DNVEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--------SEEEEE--SHHC
T ss_pred cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCC------CcceEEEeeccch
Confidence 7999999999999988754 55799999999999999999988765 5789998776543
No 232
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.87 E-value=8.3e-05 Score=64.87 Aligned_cols=123 Identities=22% Similarity=0.270 Sum_probs=76.4
Q ss_pred hHHHHHHHHhccCCCccCCCCccEEEeecCccH--HHHHHHHhcC-C-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcc
Q 023562 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGR--ITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (280)
Q Consensus 138 ~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~--~s~~l~~~~~-~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~ 213 (280)
.+.||.+.+.....+ ..-...||||||.=. ..-.++++.. + +|..||..|..+..++..+... .+
T Consensus 52 nR~Fl~RaVr~la~~---~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~--------~~ 120 (267)
T PF04672_consen 52 NRAFLRRAVRYLAEE---AGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN--------PR 120 (267)
T ss_dssp HHHHHHHHHHHHHCT---T---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT---------TT
T ss_pred HHHHHHHHHHHHHHh---cCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC--------CC
Confidence 346677666544321 122469999999642 2334555432 2 8999999999999999998773 34
Q ss_pred --eeEEEccCCCCC--CC----CCcEE-----EEEccchhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 214 --TNFFCVPLQDFT--PE----TGRYD-----VIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 214 --i~~~~~d~~~~~--~~----~~~fD-----lV~~~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
..++.+|+.+.. +. .+-+| .+++..++||+++ ++...+++.+...|.||.+++++--+
T Consensus 121 g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 121 GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 789999987642 00 01233 5667889999988 77899999999999999999998554
No 233
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=6.9e-05 Score=62.89 Aligned_cols=99 Identities=18% Similarity=0.133 Sum_probs=70.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
..++.+|+|+|+-+|.++..+++.... .|+++|+.|--. ..++.++++|+++-+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------------~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------------IPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------------CCCceEEeeeccCccHHHHHHH
Confidence 456789999999999999988777554 499999854221 356999999987653
Q ss_pred -CCCCcEEEEEccch--------hhcCChhhH-HHHHHHHHHcCCCCcEEEEEec
Q 023562 226 -PETGRYDVIWVQWC--------IGHLTDDDF-VSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 226 -~~~~~fDlV~~~~~--------l~~~~~~d~-~~~l~~~~r~LkpGG~lii~e~ 270 (280)
....++|+|+|-.. .+|.....+ ..++.-+..+|+|||.+++...
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 22345799996432 233332233 4566777789999999998643
No 234
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.87 E-value=0.00018 Score=65.64 Aligned_cols=108 Identities=16% Similarity=0.089 Sum_probs=82.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC----------------------------------------cEEEEeCCHHHHHHH
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN----------------------------------------EVDLLEPVSHFLDAA 196 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~----------------------------------------~v~~vD~S~~~l~~A 196 (280)
++..++|-=||+|.+.+..+..+.+ .+.|+|+++.||+.|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 3357999999999998877655421 277999999999999
Q ss_pred HHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhh-cCChh-----hHHHHHHHHHHcCCCCcEEEEEe
Q 023562 197 RESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HLTDD-----DFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 197 ~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~-~~~~~-----d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+.|+...|+ ...+.|.++|+.++..+.+++|+|+||--.. .+... -+..+.+.+++.++--+.++|+.
T Consensus 271 k~NA~~AGv-----~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 271 KANARAAGV-----GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHhcCC-----CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 999998877 6779999999999975547899999993211 22221 12456667778888878888763
No 235
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.85 E-value=7.1e-05 Score=67.37 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=79.1
Q ss_pred CCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCC-CCCCCcceeEEEccCCCCC-CCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFT-PETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~-~~~~~~~i~~~~~d~~~~~-~~~~~fDl 233 (280)
.-.+||-+|.|-|...+.+++. +..+|+.||.+|+||+.++.+..-..+. +.-...+++++..|...|- ...+.||.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 4468999999999999998854 2459999999999999998432211111 2222567889999987763 33468999
Q ss_pred EEcc------chhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQ------WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~------~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+.. .++..+- -.+|..-+++.|+++|.+++.
T Consensus 369 vIVDl~DP~tps~~rlY---S~eFY~ll~~~l~e~Gl~VvQ 406 (508)
T COG4262 369 VIVDLPDPSTPSIGRLY---SVEFYRLLSRHLAETGLMVVQ 406 (508)
T ss_pred EEEeCCCCCCcchhhhh---hHHHHHHHHHhcCcCceEEEe
Confidence 9854 2333222 147999999999999999986
No 236
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.85 E-value=2.5e-05 Score=65.61 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=62.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC----CCCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD 232 (280)
....|+|.-||.|..+..++.++.. |.++|++|.-|.+|+.+++-.|+ +.+++|+++|+.++ ......+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~-VisIdiDPikIa~AkhNaeiYGI-----~~rItFI~GD~ld~~~~lq~~K~~~~ 167 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY-VIAIDIDPVKIACARHNAEVYGV-----PDRITFICGDFLDLASKLKADKIKYD 167 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe-EEEEeccHHHHHHHhccceeecC-----CceeEEEechHHHHHHHHhhhhheee
Confidence 3458999999999999999988775 99999999999999999988766 66899999998764 23334578
Q ss_pred EEEcc
Q 023562 233 VIWVQ 237 (280)
Q Consensus 233 lV~~~ 237 (280)
+|+.+
T Consensus 168 ~vf~s 172 (263)
T KOG2730|consen 168 CVFLS 172 (263)
T ss_pred eeecC
Confidence 88865
No 237
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.76 E-value=6.8e-05 Score=59.28 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=46.6
Q ss_pred cEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC
Q 023562 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~ 223 (280)
.++|+|||.|.++..+++.+.. +++++|+++.+.+.+++++..+++ .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~------~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL------PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEEeeeeC
Confidence 3899999999999999887765 799999999999999999876543 246666665543
No 238
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=2.3e-05 Score=70.06 Aligned_cols=119 Identities=16% Similarity=0.062 Sum_probs=75.5
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.+++|||+|.|+|.....+-.-.++ .++.++.|+..-+........... .....+..-+..|-.+++.. ..|++|
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t--~~td~r~s~vt~dRl~lp~a-d~ytl~ 189 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST--EKTDWRASDVTEDRLSLPAA-DLYTLA 189 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc--ccCCCCCCccchhccCCCcc-ceeehh
Confidence 4678999999999877655444444 788899888766554443322111 00011111222233333333 578888
Q ss_pred EccchhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEeccCCCCCCC
Q 023562 235 WVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGSEG 278 (280)
Q Consensus 235 ~~~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~~~~~~~~~ 278 (280)
+...-+.+... ..+...++.+..++.|||.|+|.|.-+..||.-
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~ 234 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFER 234 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHH
Confidence 77665555433 345669999999999999999999988887753
No 239
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.70 E-value=0.00016 Score=61.12 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=68.5
Q ss_pred EEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc-CCCCCCCCCcEEEEEccc
Q 023562 161 ALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRYDVIWVQW 238 (280)
Q Consensus 161 VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~fDlV~~~~ 238 (280)
|.|+||--|++..+|++++.. .++++|+++.-++.|++++...++ ..++++..+| +..+++. +..|.|+.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----~~~i~~rlgdGL~~l~~~-e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----EDRIEVRLGDGLEVLKPG-EDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------TTTEEEEE-SGGGG--GG-G---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----cccEEEEECCcccccCCC-CCCCEEEEec
Confidence 689999999999999998775 799999999999999999988766 5679999998 4444432 2379998664
Q ss_pred h--------hhcCChh---------hHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 239 C--------IGHLTDD---------DFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 239 ~--------l~~~~~~---------d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+ +...++. ....-...+++.|...|+-++.|.+.
T Consensus 75 MGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 75 MGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp E-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEEEEE
T ss_pred CCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEeEEE
Confidence 3 1100000 00123445666666677777766654
No 240
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.70 E-value=0.00014 Score=65.59 Aligned_cols=88 Identities=17% Similarity=0.088 Sum_probs=62.7
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..++.++||+||++|.++..+++++. .|++||.++ |-. .+.. ..++.....|...+.+..+.+|++
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~----~L~~--------~~~V~h~~~d~fr~~p~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQ----SLMD--------TGQVEHLRADGFKFRPPRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCH----hhhC--------CCCEEEEeccCcccCCCCCCCCEE
Confidence 35778999999999999999999988 699999543 222 1222 356888888776665445789999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCC
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPG 262 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpG 262 (280)
+|-.+- ....+.+-+.++|..|
T Consensus 275 VcDmve------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVE------KPARVAELMAQWLVNG 296 (357)
T ss_pred EEeccc------CHHHHHHHHHHHHhcC
Confidence 886652 2335666666666655
No 241
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.66 E-value=0.00011 Score=64.74 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=66.1
Q ss_pred CCccEEEeecCccHHHHHHHHh--cCC-cEEEEeCCHHHHHHHHHHcC-cCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIR--YFN-EVDLLEPVSHFLDAARESLA-PENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~--~~~-~v~~vD~S~~~l~~A~~~~~-~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
.+.+|+=||||+=-++.-++.+ +.. .|+++|+++.+++.+++... ..++ ..++.|+++|..+...+-..||
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----~~~m~f~~~d~~~~~~dl~~~D 194 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----SKRMSFITADVLDVTYDLKEYD 194 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGGG-GG----S
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----cCCeEEEecchhccccccccCC
Confidence 4569999999987766655543 222 69999999999999998776 3333 5678999999877654446899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|+...... ++..+..+++..+.+.++||..+++-
T Consensus 195 vV~lAalVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 195 VVFLAALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EEEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEEEhhhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 999875543 22346679999999999999999885
No 242
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.65 E-value=0.00063 Score=57.65 Aligned_cols=115 Identities=15% Similarity=0.033 Sum_probs=74.0
Q ss_pred HHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcC-C-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 142 l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~-~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
|...+...+......++.+||-+|+.+|....++..-.. . .|.+|++|+......-...+. ..|+--+-.
T Consensus 58 LaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--------R~NIiPIl~ 129 (229)
T PF01269_consen 58 LAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--------RPNIIPILE 129 (229)
T ss_dssp HHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--------STTEEEEES
T ss_pred HHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--------CCceeeeec
Confidence 444444444444577889999999999999888876533 2 799999999664443333332 356777777
Q ss_pred cCCCC---CCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 220 PLQDF---TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 220 d~~~~---~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+..- ..--+.+|+|++--. + +++.+-++.++...||+||.+++.
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DVa--Q--p~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDVA--Q--PDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE-S--S--TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCChHHhhcccccccEEEecCC--C--hHHHHHHHHHHHhhccCCcEEEEE
Confidence 87643 122358999987544 1 246678899999999999988875
No 243
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00011 Score=68.81 Aligned_cols=118 Identities=15% Similarity=0.106 Sum_probs=77.9
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
+.|-..+.+... ...+..++|+-||||.++..++ +++..|.|+++++..++.|+.++..+|+ .|.+|+++
T Consensus 369 evLys~i~e~~~---l~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ngi------sNa~Fi~g 438 (534)
T KOG2187|consen 369 EVLYSTIGEWAG---LPADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQINGI------SNATFIVG 438 (534)
T ss_pred HHHHHHHHHHhC---CCCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcCc------cceeeeec
Confidence 344444554444 5566789999999999999876 5566899999999999999999998775 68899999
Q ss_pred cCCCCCCC--C---CcEEEEEccchhhcCChhhH-HHHHHHHHHcCCCCcEEEEEecc
Q 023562 220 PLQDFTPE--T---GRYDVIWVQWCIGHLTDDDF-VSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 220 d~~~~~~~--~---~~fDlV~~~~~l~~~~~~d~-~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
-.+++-.. . .+=++|....--. .-+ ..+++.+.+.-++-=.++++=|.
T Consensus 439 qaE~~~~sl~~~~~~~~~~v~iiDPpR----~Glh~~~ik~l~~~~~~~rlvyvSCn~ 492 (534)
T KOG2187|consen 439 QAEDLFPSLLTPCCDSETLVAIIDPPR----KGLHMKVIKALRAYKNPRRLVYVSCNP 492 (534)
T ss_pred chhhccchhcccCCCCCceEEEECCCc----ccccHHHHHHHHhccCccceEEEEcCH
Confidence 66554211 0 1224332221100 011 25666666666677777776443
No 244
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.53 E-value=2.4e-05 Score=58.83 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=42.9
Q ss_pred EEeecCccHHHHHHHHhc---C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEEEE
Q 023562 162 LDCGSGIGRITKNLLIRY---F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (280)
Q Consensus 162 LDlGcG~G~~s~~l~~~~---~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDlV~ 235 (280)
||+|+..|..+..+++.. . .+++++|+.+. .+.+++..+..++ ..+++++.++..+.- ...++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-----~~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-----SDRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG------BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-----CCeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 689999999988777532 1 26999999985 2233333332222 456999999876541 2236999999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.-.. |- .+.....++.+...|+|||++++.|
T Consensus 75 iDg~--H~-~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 75 IDGD--HS-YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp EES------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ECCC--CC-HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 8653 21 1355678889999999999999875
No 245
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00037 Score=59.50 Aligned_cols=97 Identities=25% Similarity=0.186 Sum_probs=71.7
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC--CCcEEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fDl 233 (280)
.++..+||+|+-||.++..+++++...|.++|..-.++..--++- ...+.+...++..+.++ .+..|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d----------~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND----------PRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC----------CcEEEEecCChhhCCHHHcccCCCe
Confidence 456789999999999999999999999999999877765432221 12244455566655422 136789
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
|++--+|. .+..++-.+..+++|+|.++.
T Consensus 148 ~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 148 IVIDVSFI-----SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred EEEEeehh-----hHHHHHHHHHHhcCCCceEEE
Confidence 99876655 455899999999999997765
No 246
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.50 E-value=7.1e-05 Score=70.13 Aligned_cols=101 Identities=14% Similarity=0.223 Sum_probs=67.3
Q ss_pred CccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
-..|+|..+|.|.++..|.+.-.- +|+-+ ..+..+...-+ .|+ +-.+..--+.|+.-+.+||+|.
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIyd----RGL--------IG~yhDWCE~fsTYPRTYDLlH 432 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYD----RGL--------IGVYHDWCEAFSTYPRTYDLLH 432 (506)
T ss_pred eeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhh----ccc--------chhccchhhccCCCCcchhhee
Confidence 347999999999999988765322 33333 22222322211 122 1122333355665568999999
Q ss_pred ccchhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~~~~-~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+..+|....+ =++..++-++-|+|||||+++|.|++
T Consensus 433 A~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 433 ADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred hhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 9988876543 35688999999999999999998765
No 247
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.49 E-value=0.00043 Score=61.60 Aligned_cols=108 Identities=20% Similarity=0.140 Sum_probs=80.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~ 230 (280)
+.++.+|||+.+++|.-+..+++.... .|+++|+++.-+...+.++...|. .++.....|..... .....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARKLDPKKPESK 156 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHHHHHHHHTTT
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeeccccccccccccc
Confidence 567789999999999999999887653 899999999999999998887654 45666666665542 12246
Q ss_pred EEEEEc----c--chhhcCChh-------h-------HHHHHHHHHHcC----CCCcEEEEE
Q 023562 231 YDVIWV----Q--WCIGHLTDD-------D-------FVSFFKRAKVGL----KPGGFFVLK 268 (280)
Q Consensus 231 fDlV~~----~--~~l~~~~~~-------d-------~~~~l~~~~r~L----kpGG~lii~ 268 (280)
||.|+. + .++..-++. + ..++|+.+.+.+ ||||+++.+
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYs 218 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYS 218 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEE
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEE
Confidence 999983 2 333332221 1 357899999999 999999886
No 248
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.0013 Score=57.27 Aligned_cols=101 Identities=13% Similarity=0.044 Sum_probs=76.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--CCCc
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~ 230 (280)
..++.+|++-|.|.|.++.++++.... ++.-+|+.+.-.+.|++.+++.++ +.++++..-|+....+ ....
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----~~~vt~~hrDVc~~GF~~ks~~ 177 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----GDNVTVTHRDVCGSGFLIKSLK 177 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----CcceEEEEeecccCCccccccc
Confidence 678899999999999999999876433 899999999999999999998765 7889999998876543 2468
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCc-EEEE
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFVL 267 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG-~lii 267 (280)
+|.|+.-.- ..-.++-.++.+||.+| +++.
T Consensus 178 aDaVFLDlP-------aPw~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 178 ADAVFLDLP-------APWEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred cceEEEcCC-------ChhhhhhhhHHHhhhcCceEEe
Confidence 899876432 22234444555777766 4443
No 249
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.00021 Score=57.31 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=76.2
Q ss_pred cccchHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCC
Q 023562 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (280)
Q Consensus 134 ~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~ 211 (280)
.+-.+++.|...+.+-. +.-.+.+||++|.|.=.++--+...... .|...|-+++.++..++....+.....
T Consensus 9 ciwpseeala~~~l~~~---n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~--- 82 (201)
T KOG3201|consen 9 CIWPSEEALAWTILRDP---NKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSL--- 82 (201)
T ss_pred EecccHHHHHHHHHhch---hHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccccc---
Confidence 34444555554443211 1334679999999965554444433333 899999999999988776544211000
Q ss_pred cceeEEEccCCCC--CCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 212 KATNFFCVPLQDF--TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 212 ~~i~~~~~d~~~~--~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
..+....-+...- ..+...||.|++..++-. ++--..+++.+.+.|+|.|.-++..+
T Consensus 83 tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 83 TSCCVLRWLIWGAQSQQEQHTFDIILAADCLFF--DEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred ceehhhHHHHhhhHHHHhhCcccEEEeccchhH--HHHHHHHHHHHHHHhCcccceeEecC
Confidence 1111111111110 123358999999987643 33446789999999999998777544
No 250
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=6.5e-05 Score=59.75 Aligned_cols=47 Identities=28% Similarity=0.375 Sum_probs=42.4
Q ss_pred CCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 222 ~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
....+.+++.|+|++..++.|++-++...+++.+.+.|||||++-|+
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEE
Confidence 33456679999999999999999999999999999999999999886
No 251
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.34 E-value=0.00047 Score=57.01 Aligned_cols=110 Identities=19% Similarity=0.205 Sum_probs=69.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cCC-cEEEEeCCHH----------HHHHHHHHcCcCCCCCCCCCcceeEEEccCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSH----------FLDAARESLAPENHMAPDMHKATNFFCVPLQ 222 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~~-~v~~vD~S~~----------~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~ 222 (280)
.+++.+|+|+=-|.|.+++-+... +.. .|+++=+.+. +-..+++.. ..|...+..++.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~----------~aN~e~~~~~~~ 115 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV----------YANVEVIGKPLV 115 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh----------hhhhhhhCCccc
Confidence 567889999999999999955533 222 4555543332 122222211 234455555555
Q ss_pred CCCCCCCcEEEEEccchhh--c---CChhhHHHHHHHHHHcCCCCcEEEEEeccCCCC
Q 023562 223 DFTPETGRYDVIWVQWCIG--H---LTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (280)
Q Consensus 223 ~~~~~~~~fDlV~~~~~l~--~---~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~ 275 (280)
.+. .++..|+++.+...| | +......++...+++.|||||.+.+.|+....|
T Consensus 116 A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG 172 (238)
T COG4798 116 ALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPG 172 (238)
T ss_pred ccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCC
Confidence 555 336778887642221 1 223456789999999999999999999987654
No 252
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.31 E-value=0.0011 Score=58.80 Aligned_cols=109 Identities=20% Similarity=0.240 Sum_probs=72.0
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHc---CcCC--------------------CCCCC----
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL---APEN--------------------HMAPD---- 209 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~---~~~~--------------------~~~~~---- 209 (280)
...+||--|||.|+++..|+..|+. +-|-+.|--|+=...=.+ ...+ +....
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 4568999999999999999999886 888898888865433222 1100 00000
Q ss_pred -----CCc--ceeEEEccCCCCCC---CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 210 -----MHK--ATNFFCVPLQDFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 210 -----~~~--~i~~~~~d~~~~~~---~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+. ......+|+.+.-. ..+.||+|+.++.+.-.. ..-.+|+.+..+|||||+.+=.
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~--NileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH--NILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH--HHHHHHHHHHHhccCCcEEEec
Confidence 000 11112345444321 124799999998876554 7889999999999999988654
No 253
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.21 E-value=0.0018 Score=57.67 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=52.5
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcC-CCCCCCCCcceeEE
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFF 217 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~-~~~~~~~~~~i~~~ 217 (280)
.++.+++...-.. .....++||||||...+-.-|..+.+. +++|.|+++..++.|++++..+ ++ ..+|++.
T Consensus 87 ~~i~DlL~~~~~~--~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----~~~I~l~ 159 (299)
T PF05971_consen 87 HWIADLLASSNPG--IPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----ESRIELR 159 (299)
T ss_dssp HHHHHHHT--TCG--CS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------TTTEEEE
T ss_pred HHHHHHhhccccc--cccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----ccceEEE
Confidence 4555655532111 122568999999998665544433222 7999999999999999999886 54 4567766
Q ss_pred Ecc----CCC-CCCCCCcEEEEEccchhhc
Q 023562 218 CVP----LQD-FTPETGRYDVIWVQWCIGH 242 (280)
Q Consensus 218 ~~d----~~~-~~~~~~~fDlV~~~~~l~~ 242 (280)
... +.. +..+.+.||+.+|+--|+-
T Consensus 160 ~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 160 KQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp E--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred EcCCccccchhhhcccceeeEEecCCcccc
Confidence 542 211 1223368999999976654
No 254
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.15 E-value=0.0026 Score=52.37 Aligned_cols=102 Identities=21% Similarity=0.163 Sum_probs=64.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-CC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cCCCCC------
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFT------ 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~------ 225 (280)
..++.+|||+||.+|.++.-..++. +. -|.|||+-. +.. ...++++++ |+++-.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p--------~~Ga~~i~~~dvtdp~~~~ki~ 129 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEP--------PEGATIIQGNDVTDPETYRKIF 129 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccC--------CCCcccccccccCCHHHHHHHH
Confidence 4567899999999999998665553 32 689999621 111 234566666 666531
Q ss_pred --CCCCcEEEEEccch--------hhcCChhhH-HHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 226 --PETGRYDVIWVQWC--------IGHLTDDDF-VSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 226 --~~~~~fDlV~~~~~--------l~~~~~~d~-~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
.+..+.|+|++-.. ..|....++ ..++--....++|+|.|++.-+...
T Consensus 130 e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 130 EALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred HhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 34568999997643 222111122 3344445567899999999866543
No 255
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.11 E-value=0.0012 Score=52.21 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=58.1
Q ss_pred cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--CCCCcEEEEEccchhhcCChh---------hHHH
Q 023562 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDD---------DFVS 250 (280)
Q Consensus 182 ~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fDlV~~~~~l~~~~~~---------d~~~ 250 (280)
+|.++|+-+.+|+..++++...++ ..+++++..+=+.+. .+.+++|+++.|.. |+|-. .-..
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~ 73 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL-----EDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLK 73 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC-----CCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHH
Confidence 489999999999999999988655 457888887655443 12258999988744 44432 2467
Q ss_pred HHHHHHHcCCCCcEEEEEeccC
Q 023562 251 FFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 251 ~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.++.+.++|+|||++.++-...
T Consensus 74 Al~~al~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 74 ALEAALELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHHHHHHEEEEEEEEEEE--S
T ss_pred HHHHHHHhhccCCEEEEEEeCC
Confidence 8999999999999999875543
No 256
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.011 Score=49.40 Aligned_cols=116 Identities=13% Similarity=0.048 Sum_probs=80.0
Q ss_pred HHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 141 FLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 141 ~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
-|...+...+......++.+||=+|+.+|....++..--.. .+.+|++|+.+....-..+.. ..|+--+..
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~--------R~Ni~PIL~ 131 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK--------RPNIIPILE 131 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--------CCCceeeec
Confidence 34455545555555788999999999999998888765433 699999999987665555444 355666777
Q ss_pred cCCCCC---CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 220 PLQDFT---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 220 d~~~~~---~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+..-. .--+..|+|+.--+ .++..+-+..++..-||+||.++++
T Consensus 132 DA~~P~~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 132 DARKPEKYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred ccCCcHHhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 765421 11246888876432 2335567889999999999965553
No 257
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0028 Score=58.98 Aligned_cols=121 Identities=19% Similarity=0.149 Sum_probs=77.7
Q ss_pred CCCccEEEeecCccHHHH--HHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcE
Q 023562 156 NQHLVALDCGSGIGRITK--NLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~--~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f 231 (280)
..+..+.|+|.|.|.-.- ..+.+. ...++.||.|..|+...........-.+..+..++.|+..- ++ .....|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~---~pi~~~~~y 275 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQR---LPIDIKNGY 275 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhccc---CCCCcccce
Confidence 345688899888775433 333333 33799999999999999888766211111111121222211 12 122469
Q ss_pred EEEEccchhhcCChhhH--HHHHHHHHHcCCCCcEEEEEeccCCCCCCCC
Q 023562 232 DVIWVQWCIGHLTDDDF--VSFFKRAKVGLKPGGFFVLKENIARSGSEGI 279 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~--~~~l~~~~r~LkpGG~lii~e~~~~~~~~~~ 279 (280)
|+|++.+.+++++.... ....+-..+..++||.+++.|+-.+-++..+
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g~e~l 325 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMGLELL 325 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccchhhH
Confidence 99999999999876432 2334456677899999999999888777654
No 258
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.95 E-value=0.0043 Score=53.80 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=66.8
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC---CCCCCc-EE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---TPETGR-YD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~~~-fD 232 (280)
...+||++|+|+|..+...+.....+|...|+...+ +..+.+....+......+..+.....+..+. ..-... +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV-ENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhH-HHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 356899999999988887766566568888865443 3333332222211111122344443333322 111123 99
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|+++.++.+-. ....++..++..|..+|.+++.-
T Consensus 165 lilasDvvy~~~--~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 165 LILASDVVYEEE--SFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEEEeeeeecCC--cchhHHHHHHHHHhcCCeEEEEE
Confidence 999998876644 55688888999999999666543
No 259
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.95 E-value=0.0022 Score=55.34 Aligned_cols=82 Identities=13% Similarity=0.019 Sum_probs=57.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
...+.+|+|||||.--++..+...... .+.++|++..+++......... +.+.++...|+..-++. ...|+
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-------~~~~~~~v~Dl~~~~~~-~~~Dl 174 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-------GVPHDARVRDLLSDPPK-EPADL 174 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-------T-CEEEEEE-TTTSHTT-SEESE
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-------CCCcceeEeeeeccCCC-CCcch
Confidence 345789999999999998877744332 8999999999999998876654 35677777787665444 68999
Q ss_pred EEccchhhcCC
Q 023562 234 IWVQWCIGHLT 244 (280)
Q Consensus 234 V~~~~~l~~~~ 244 (280)
.+.-=+++-+.
T Consensus 175 aLllK~lp~le 185 (251)
T PF07091_consen 175 ALLLKTLPCLE 185 (251)
T ss_dssp EEEET-HHHHH
T ss_pred hhHHHHHHHHH
Confidence 99876655443
No 260
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.94 E-value=0.0017 Score=54.16 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=67.0
Q ss_pred CccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCC-CCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHM-APDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.-.+.|||||.|.+...|+..+++ -+.|.+|--..-+..++++...+.. ....-.|+.....+..-+.+ +-|---.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp--n~f~kgq 138 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP--NFFEKGQ 138 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc--chhhhcc
Confidence 346899999999999999888777 7899999888888888877653211 11112344455444333211 1111111
Q ss_pred ccchhhcCChhh-----------HHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWCIGHLTDDD-----------FVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~~~d-----------~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.+-.+..++++. -...+.+..-+|++||.++....
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEee
Confidence 111112222221 13577888899999999987643
No 261
>PHA01634 hypothetical protein
Probab=96.93 E-value=0.0033 Score=48.57 Aligned_cols=47 Identities=17% Similarity=-0.014 Sum_probs=43.4
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE 203 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~ 203 (280)
.+.+|+|+|++.|..+++++-++...|.++++++...+..+++++..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 45799999999999999999999999999999999999999988764
No 262
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.87 E-value=0.0039 Score=55.80 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=59.6
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~ 228 (280)
..++..++|+-||.|..+..+++... ..|+++|.++.+++.+++++... ..++.++++++.++. ...
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-------~~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-------EGRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-------CCcEEEEeCCHHHHHHHHHhcCC
Confidence 45667999999999999999998743 47999999999999999987542 346888888877653 123
Q ss_pred CcEEEEEcc
Q 023562 229 GRYDVIWVQ 237 (280)
Q Consensus 229 ~~fDlV~~~ 237 (280)
.++|.|+..
T Consensus 91 ~~vDgIl~D 99 (305)
T TIGR00006 91 TKIDGILVD 99 (305)
T ss_pred CcccEEEEe
Confidence 568888744
No 263
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.84 E-value=0.0091 Score=52.89 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=67.3
Q ss_pred cEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC--CCcEEEEEcc
Q 023562 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQ 237 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fDlV~~~ 237 (280)
+|+|+-||.|.++..+.+.++..+.++|+++.+++..+.++... ..+.|+.++... ...+|+++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~------------~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK------------LIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC------------CccCccccCchhhcCCCCCEEEeC
Confidence 69999999999999998888888999999999999999887541 455677666532 2579999854
Q ss_pred c-----hhhc----CChh--hH-HHHHHHHHHcCCCCcEEEEEeccC
Q 023562 238 W-----CIGH----LTDD--DF-VSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 238 ~-----~l~~----~~~~--d~-~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
. +... ..++ .+ ..++ ++.+.++|. +++.|||.
T Consensus 70 pPCq~fS~ag~~~~~~d~r~~L~~~~~-~~i~~~~P~--~~v~ENV~ 113 (275)
T cd00315 70 FPCQPFSIAGKRKGFEDTRGTLFFEII-RILKEKKPK--YFLLENVK 113 (275)
T ss_pred CCChhhhHHhhcCCCCCchHHHHHHHH-HHHHhcCCC--EEEEEcCc
Confidence 2 1111 1111 12 2333 344445665 77889984
No 264
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.70 E-value=0.0034 Score=55.29 Aligned_cols=113 Identities=15% Similarity=0.141 Sum_probs=81.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~f 231 (280)
..++.+||-+|.|-|.+.+..+.+ .+.+++.+|+....++..++.++... ..-.+.++..+-+|-..+ ....++|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la--~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLA--CGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHh--cccCCCceEEEeccHHHHHHHhccCCc
Confidence 446789999999999998877766 23389999999999999998876532 223356788888875444 1224799
Q ss_pred EEEEccch--hhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 232 DVIWVQWC--IGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 232 DlV~~~~~--l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+|+.-.. ..-.-..-...++..+.+.||+||++++.+
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 99985422 211111123578999999999999998874
No 265
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.60 E-value=0.0038 Score=57.73 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=58.0
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-CCcEEEEEcc
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQ 237 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fDlV~~~ 237 (280)
..|||+|.|||.++....+.+.+.|++++.=..|.+.|++....+|. ..+++++.---++.... ..+.|+++.-
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----SdkI~vInkrStev~vg~~~RadI~v~e 142 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----SDKINVINKRSTEVKVGGSSRADIAVRE 142 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----ccceeeeccccceeeecCcchhhhhhHh
Confidence 46899999999999988888988999999999999999999888766 56777776554444322 1346776654
Q ss_pred c
Q 023562 238 W 238 (280)
Q Consensus 238 ~ 238 (280)
.
T Consensus 143 ~ 143 (636)
T KOG1501|consen 143 D 143 (636)
T ss_pred h
Confidence 3
No 266
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.56 E-value=0.017 Score=48.84 Aligned_cols=77 Identities=16% Similarity=-0.020 Sum_probs=60.5
Q ss_pred CccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
+.++.|+||-.+++..++.+.+.. .+++.|+++..++.|.+++...++ ...++..++|...--..+..+|.|+.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----~~~i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----SERIDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----cceEEEeccCCccccCccCCcCEEEE
Confidence 446999999999999999988665 899999999999999999998766 56677777776322122247899987
Q ss_pred cch
Q 023562 237 QWC 239 (280)
Q Consensus 237 ~~~ 239 (280)
..+
T Consensus 92 AGM 94 (226)
T COG2384 92 AGM 94 (226)
T ss_pred eCC
Confidence 643
No 267
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.46 E-value=0.014 Score=53.80 Aligned_cols=107 Identities=16% Similarity=0.069 Sum_probs=77.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~ 229 (280)
+.++.||||..+-+|.-+-+++.-..+ .|.+.|.+..-+...++++...|. .+......|...++ ++ +
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------~ntiv~n~D~~ef~~~~~~-~ 311 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------TNTIVSNYDGREFPEKEFP-G 311 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------CceEEEccCcccccccccC-c
Confidence 677889999999999888777765332 699999999999999999887654 34445566766654 33 4
Q ss_pred cEEEEE----ccc--hhhcCCh-------------h-hHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIW----VQW--CIGHLTD-------------D-DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~----~~~--~l~~~~~-------------~-d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+||-|+ |+. ++.--.. . -..++|..+..++++||+|+.+
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYS 370 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYS 370 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEE
Confidence 899997 333 2211000 0 1357888999999999999886
No 268
>PRK10742 putative methyltransferase; Provisional
Probab=96.45 E-value=0.0059 Score=52.86 Aligned_cols=109 Identities=18% Similarity=0.105 Sum_probs=72.0
Q ss_pred cEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCC---CCCCCcceeEEEccCCCCC-CCCCcEEEEE
Q 023562 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM---APDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~---~~~~~~~i~~~~~d~~~~~-~~~~~fDlV~ 235 (280)
+|||+-+|.|..+..++.++.. |+++|-|+.+....+.++...... ......+++.+.+|..++- ....+||+|+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY 169 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence 8999999999999999988886 999999999988888776652100 0001246888888876652 1224799999
Q ss_pred ccchhhc----------------C--ChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 236 VQWCIGH----------------L--TDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 236 ~~~~l~~----------------~--~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+--.+.| + .+++-..+|..+.++-+ -.+++.++-
T Consensus 170 lDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~--kRVVVKrp~ 221 (250)
T PRK10742 170 LDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT--KRVVVKRPD 221 (250)
T ss_pred ECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC--ceEEEecCC
Confidence 4422222 1 12234466666666544 456666543
No 269
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.28 E-value=0.017 Score=50.34 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=36.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcC---------CcEEEEeCCHHHHHHHHHHcCc
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~---------~~v~~vD~S~~~l~~A~~~~~~ 202 (280)
.+.+|+|+|+|.|.++..+++... .+++.||+|+.+.+.-++++..
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 357999999999999999987522 1799999999999999998876
No 270
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.21 E-value=0.018 Score=54.51 Aligned_cols=121 Identities=16% Similarity=0.225 Sum_probs=82.8
Q ss_pred HHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHh---cCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeE
Q 023562 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR---YFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (280)
Q Consensus 142 l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~---~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~ 216 (280)
+...+..+.++...+....|+-+|+|.|-+....++. ... ++.+||-+|.++-..+.+.-+ .-..++++
T Consensus 352 i~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~------~W~~~Vti 425 (649)
T KOG0822|consen 352 ILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFE------CWDNRVTI 425 (649)
T ss_pred HHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchh------hhcCeeEE
Confidence 3333433433222333567899999999776655432 222 799999999998877653222 11467999
Q ss_pred EEccCCCCCCCCCcEEEEEccchhhcCChhhH-HHHHHHHHHcCCCCcEEEEEe
Q 023562 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDF-VSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 217 ~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~-~~~l~~~~r~LkpGG~lii~e 269 (280)
+..|+..|..+..+.|++++- .|.-+.+.++ .+-+.-+.+.|||+|+.+=..
T Consensus 426 i~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 426 ISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred EeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 999999998655789988754 4455556555 678889999999999876443
No 271
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=96.04 E-value=0.0032 Score=55.17 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=66.3
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH-cCcC---CCCCCCCCcceeEEEccCCCCCC-CCC-
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES-LAPE---NHMAPDMHKATNFFCVPLQDFTP-ETG- 229 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~-~~~~---~~~~~~~~~~i~~~~~d~~~~~~-~~~- 229 (280)
..+++|||+|||.|.-.+.....+...++..|+|...++.-.-- +... +........-.......+.++.. ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 46789999999999999888777766799999998888422110 0000 00000001112222221113221 113
Q ss_pred -cEEEEEccchhhcCChhhHHHH-HHHHHHcCCCCcEEEEE
Q 023562 230 -RYDVIWVQWCIGHLTDDDFVSF-FKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 -~fDlV~~~~~l~~~~~~d~~~~-l~~~~r~LkpGG~lii~ 268 (280)
.||+|.++-.+.-.+ .++.+ .-....+++++|.+++.
T Consensus 195 ~~ydlIlsSetiy~~~--~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 195 THYDLILSSETIYSID--SLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred cchhhhhhhhhhhCcc--hhhhhHhhhhhhcCCccchhhhh
Confidence 799999998776554 44455 66667788999988764
No 272
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.03 E-value=0.011 Score=54.59 Aligned_cols=102 Identities=14% Similarity=0.154 Sum_probs=72.9
Q ss_pred CCccEEEeecCccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCc-ceeEEEccCCCCC-CCCCcEE
Q 023562 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFT-PETGRYD 232 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~--~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~-~~~~~fD 232 (280)
.+.+|||.=+|+|.=++..+.. +...|++.|+|+.+++..++|++.+++ .. .+.+.+.|+..+- .....||
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~-----~~~~~~v~~~DAn~ll~~~~~~fD 123 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL-----EDERIEVSNMDANVLLYSRQERFD 123 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT------SGCCEEEEES-HHHHHCHSTT-EE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc-----cCceEEEehhhHHHHhhhccccCC
Confidence 3568999999999888777766 445899999999999999999888766 23 4777777766542 1347899
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|=.- -+. ....|+..+.+.++.||++.++-
T Consensus 124 ~IDlD----PfG--Sp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 124 VIDLD----PFG--SPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EEEE------SS----HHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeC----CCC--CccHhHHHHHHHhhcCCEEEEec
Confidence 99543 112 34489999999999999999973
No 273
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.01 E-value=0.019 Score=52.29 Aligned_cols=114 Identities=17% Similarity=0.074 Sum_probs=58.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHh--------c---C---C---cEEEEeCCH-HHHHHHHHHcCcC-CCCCCCCCccee
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIR--------Y---F---N---EVDLLEPVS-HFLDAARESLAPE-NHMAPDMHKATN 215 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~--------~---~---~---~v~~vD~S~-~~l~~A~~~~~~~-~~~~~~~~~~i~ 215 (280)
.....+|+|+||..|..+..+.+. + . . +|..-|.-. ..-...+..-... .+. .....-+.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~-~~~~~f~~ 92 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLK-KFRNYFVS 92 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHH-HTTSEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccC-CCceEEEE
Confidence 345679999999999988866542 1 1 0 577777432 2222111110000 000 00001122
Q ss_pred EEEccCCCCCCCCCcEEEEEccchhhcCCh-------------------------------------hhHHHHHHHHHHc
Q 023562 216 FFCVPLQDFTPETGRYDVIWVQWCIGHLTD-------------------------------------DDFVSFFKRAKVG 258 (280)
Q Consensus 216 ~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~-------------------------------------~d~~~~l~~~~r~ 258 (280)
-+.+.+-.--+++++.|++++.+++|++.. .|+..||+.=++-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 223344333356689999999999988653 1456677777778
Q ss_pred CCCCcEEEEEe
Q 023562 259 LKPGGFFVLKE 269 (280)
Q Consensus 259 LkpGG~lii~e 269 (280)
|+|||.+++.=
T Consensus 173 Lv~GG~mvl~~ 183 (334)
T PF03492_consen 173 LVPGGRMVLTF 183 (334)
T ss_dssp EEEEEEEEEEE
T ss_pred eccCcEEEEEE
Confidence 99999999873
No 274
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.053 Score=43.13 Aligned_cols=101 Identities=20% Similarity=0.096 Sum_probs=65.8
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..+.++.+|+|.|-|++....++.+...-+|+++++-.+..++-+.-..+. .....|..-|+-.++..+-.+=+|
T Consensus 70 ~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~-----~k~trf~RkdlwK~dl~dy~~vvi 144 (199)
T KOG4058|consen 70 GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC-----AKSTRFRRKDLWKVDLRDYRNVVI 144 (199)
T ss_pred CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc-----ccchhhhhhhhhhccccccceEEE
Confidence 345579999999999999988888755799999999999998877655544 455667777765555443333344
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
+-...+ ++ + +-.++..-|..+-.++-
T Consensus 145 Fgaes~--m~--d---Le~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 145 FGAESV--MP--D---LEDKLRTELPANTRVVA 170 (199)
T ss_pred eehHHH--Hh--h---hHHHHHhhCcCCCeEEE
Confidence 333332 22 3 33444445555555443
No 275
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.081 Score=45.68 Aligned_cols=111 Identities=20% Similarity=0.275 Sum_probs=76.8
Q ss_pred CCccEEEeecCccHHHHHHHHhcCC-----cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCC-
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPET- 228 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~-----~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~- 228 (280)
.+...+|+|+|+..-++.|+..... ++..+|+|...++...+.+...- ....+.-+++|.+.- .++.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y-----~~l~v~~l~~~~~~~La~~~~~ 152 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY-----PGLEVNALCGDYELALAELPRG 152 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC-----CCCeEeehhhhHHHHHhcccCC
Confidence 3568999999999988877765322 89999999999886443332210 023455566665431 1122
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE-eccC
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK-ENIA 272 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~-e~~~ 272 (280)
++==.++.-.++..+++++...|+..+...|+||-++++- |.+.
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 2333444557899999999999999999999999998885 5443
No 276
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.84 E-value=0.036 Score=51.22 Aligned_cols=44 Identities=20% Similarity=0.334 Sum_probs=34.8
Q ss_pred CCCCcEEEEEccchhhcCCh------------------------------------hhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 226 PETGRYDVIWVQWCIGHLTD------------------------------------DDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~------------------------------------~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
++.++.+++++++++|++.. .|+..||+.=++-|.|||.++++=
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 55689999999999998763 135567777778899999999873
No 277
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.75 E-value=0.06 Score=48.91 Aligned_cols=97 Identities=15% Similarity=0.071 Sum_probs=66.4
Q ss_pred cCCCCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc-CCCCCCCCCcE
Q 023562 154 RNNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRY 231 (280)
Q Consensus 154 ~~~~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~f 231 (280)
..+++.+|+=+|+| -|..+..+++....+|+++|.|++-++.|++.-.+. ++... -.....-.+.|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~------------~i~~~~~~~~~~~~~~~ 230 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH------------VINSSDSDALEAVKEIA 230 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE------------EEEcCCchhhHHhHhhC
Confidence 35678888888887 345677777744467999999999999999875542 22221 11111111349
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|+|+..-. . ..+....+.||+||.+++.-+.
T Consensus 231 d~ii~tv~-~--------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 231 DAIIDTVG-P--------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred cEEEECCC-h--------hhHHHHHHHHhcCCEEEEECCC
Confidence 99987654 2 4667778899999999998665
No 278
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.72 E-value=0.005 Score=46.36 Aligned_cols=39 Identities=38% Similarity=0.676 Sum_probs=29.7
Q ss_pred cEEEEEccchh--hcC--ChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCI--GHL--TDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l--~~~--~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+||+|+|-.+. .|+ .|+-+..+++++++.|+|||.+++-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 49999987543 233 3466889999999999999999873
No 279
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.72 E-value=0.055 Score=48.02 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=60.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 227 (280)
..+++..+|+--|.|..+..+++++.. +++++|-++.+|+.|++++... ..++.+++.++.++. ..
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-------~~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-------DGRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-------CCcEEEEeCcHHHHHHHHHhcC
Confidence 566789999999999999999999864 6999999999999999998653 457888888776653 22
Q ss_pred CCcEEEEE
Q 023562 228 TGRYDVIW 235 (280)
Q Consensus 228 ~~~fDlV~ 235 (280)
.+++|.|+
T Consensus 94 i~~vDGiL 101 (314)
T COG0275 94 IGKVDGIL 101 (314)
T ss_pred CCceeEEE
Confidence 34777776
No 280
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.59 E-value=0.031 Score=41.90 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=33.8
Q ss_pred HHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeC
Q 023562 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (280)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~ 188 (280)
..+|..+...... ..+....+|+|||+|.+.--|.+.|+. =.|+|.
T Consensus 43 AAyLi~LW~~~~~---~~~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~ 88 (112)
T PF07757_consen 43 AAYLIELWRDMYG---EQKFQGFVDLGCGNGLLVYILNSEGYP-GWGIDA 88 (112)
T ss_pred HHHHHHHHhcccC---CCCCCceEEccCCchHHHHHHHhCCCC-cccccc
Confidence 3666666665544 345668999999999998877777775 777884
No 281
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.53 E-value=0.11 Score=44.62 Aligned_cols=120 Identities=17% Similarity=0.017 Sum_probs=71.9
Q ss_pred HHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHh-cCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc
Q 023562 142 LQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (280)
Q Consensus 142 l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~-~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~ 219 (280)
|..-+...+.+...+++.+||-+|++.|.....+..- +++ .|.+|+.|+..=...-...+. ..|+--+.-
T Consensus 141 LAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--------RtNiiPIiE 212 (317)
T KOG1596|consen 141 LAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--------RTNIIPIIE 212 (317)
T ss_pred HHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--------cCCceeeec
Confidence 3333333344445678899999999999887767654 233 799999987643332222222 244555555
Q ss_pred cCCCCC---CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE--eccCC
Q 023562 220 PLQDFT---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK--ENIAR 273 (280)
Q Consensus 220 d~~~~~---~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~--e~~~~ 273 (280)
|+..-. ..-.-.|+|++.-. .++....+.-++.-.||+||.|+++ .||..
T Consensus 213 DArhP~KYRmlVgmVDvIFaDva----qpdq~RivaLNA~~FLk~gGhfvisikancid 267 (317)
T KOG1596|consen 213 DARHPAKYRMLVGMVDVIFADVA----QPDQARIVALNAQYFLKNGGHFVISIKANCID 267 (317)
T ss_pred cCCCchheeeeeeeEEEEeccCC----CchhhhhhhhhhhhhhccCCeEEEEEeccccc
Confidence 654421 11134566655322 1233455666788899999999886 66643
No 282
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.49 E-value=0.13 Score=44.40 Aligned_cols=98 Identities=18% Similarity=0.215 Sum_probs=60.4
Q ss_pred CCccEEEeecCccHHHHHHHH-hcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC--CCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLI-RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~-~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fDl 233 (280)
.+++||-+|=.--. +..++- ..+.+|+.+|+++.+++..++..+..|+ +++.+..|+.+--++ .++||+
T Consensus 44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-------~i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-------PIEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---------EEEE---TTS---TTTSS-BSE
T ss_pred cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-------ceEEEEecccccCCHHHhcCCCE
Confidence 46789999965543 333333 3455899999999999999988877643 488899998764222 379999
Q ss_pred EEcc--chhhcCChhhHHHHHHHHHHcCCCCc-EEEE
Q 023562 234 IWVQ--WCIGHLTDDDFVSFFKRAKVGLKPGG-FFVL 267 (280)
Q Consensus 234 V~~~--~~l~~~~~~d~~~~l~~~~r~LkpGG-~lii 267 (280)
+++. +.+ +-+.-|+.+....||..| ..++
T Consensus 116 f~TDPPyT~-----~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243)
T PF01861_consen 116 FFTDPPYTP-----EGLKLFLSRGIEALKGEGCAGYF 147 (243)
T ss_dssp EEE---SSH-----HHHHHHHHHHHHTB-STT-EEEE
T ss_pred EEeCCCCCH-----HHHHHHHHHHHHHhCCCCceEEE
Confidence 9987 443 467789999999998877 4444
No 283
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.42 E-value=0.026 Score=48.13 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=63.2
Q ss_pred ccEEEeecCccHHHHHHHHhcCC----------cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---
Q 023562 159 LVALDCGSGIGRITKNLLIRYFN----------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--- 225 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~----------~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--- 225 (280)
.|++|+.+.+|.++..+.++.+. .|++||+.+-. . -..+.-+++|++...
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------P---------I~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------P---------IEGVIQLQGDITSASTAE 105 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------c---------cCceEEeecccCCHhHHH
Confidence 58999999999999977766332 28899974311 1 134666788887643
Q ss_pred -----CCCCcEEEEEccch-----hhcCCh----hhHHHHHHHHHHcCCCCcEEEE
Q 023562 226 -----PETGRYDVIWVQWC-----IGHLTD----DDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 226 -----~~~~~fDlV~~~~~-----l~~~~~----~d~~~~l~~~~r~LkpGG~lii 267 (280)
+..++.|+|+|-.. +|-++. +-+...|.-...+|||||.|+-
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 34468999998743 443332 1235667777899999999875
No 284
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.40 E-value=0.036 Score=49.69 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=55.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----C-C
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-E 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-~ 227 (280)
+.++...+|+--|.|..+..++++... .+.++|.++.+++.|++++... ..++.++.+++.++. . .
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-------~~r~~~~~~~F~~l~~~l~~~~~ 90 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-------DDRFIFIHGNFSNLDEYLKELNG 90 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-------CTTEEEEES-GGGHHHHHHHTTT
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-------cceEEEEeccHHHHHHHHHHccC
Confidence 456779999999999999999987554 8999999999999999988653 467899998887653 2 3
Q ss_pred CCcEEEEEc
Q 023562 228 TGRYDVIWV 236 (280)
Q Consensus 228 ~~~fDlV~~ 236 (280)
..++|.|+.
T Consensus 91 ~~~~dgiL~ 99 (310)
T PF01795_consen 91 INKVDGILF 99 (310)
T ss_dssp TS-EEEEEE
T ss_pred CCccCEEEE
Confidence 357888873
No 285
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.01 E-value=0.11 Score=47.26 Aligned_cols=102 Identities=18% Similarity=0.159 Sum_probs=71.6
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCC--C-cEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--G-RYDVI 234 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~-~fDlV 234 (280)
..+++|+=||.|.+...+.+.+++-+.++|+++..++.-+.++.. ..+...|+..+.... . .+|++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----------~~~~~~di~~~~~~~~~~~~~Dvl 71 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----------GDIILGDIKELDGEALRKSDVDVL 71 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----------CceeechHhhcChhhccccCCCEE
Confidence 358999999999999999988998999999999999999888763 344556666554221 2 78999
Q ss_pred Eccc---hhhcC------Ch--hhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 235 WVQW---CIGHL------TD--DDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 235 ~~~~---~l~~~------~~--~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
+... .+... .+ ..+---+.++...++| .+++.|||.
T Consensus 72 igGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~ 118 (328)
T COG0270 72 IGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVK 118 (328)
T ss_pred EeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCc
Confidence 8431 11111 11 1123445566677788 888889984
No 286
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.95 E-value=0.11 Score=41.89 Aligned_cols=104 Identities=18% Similarity=0.168 Sum_probs=64.4
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHH-HHHHcCcCCCCCCCCCcceeEEEccCC-CCCCCCCcEEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-ARESLAPENHMAPDMHKATNFFCVPLQ-DFTPETGRYDVIW 235 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~-A~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~fDlV~ 235 (280)
+++++-+|...=.+-...++++..+|.-||.++--++. .+.+. .++...|+. ++....++||.+.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~-------------ssi~p~df~~~~~~y~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL-------------SSILPVDFAKNWQKYAGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc-------------ccccHHHHHHHHHHhhccchhhh
Confidence 35678888886666665667788789889876422210 01111 011111111 1212237899999
Q ss_pred ccchhhcCC---------hhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 236 VQWCIGHLT---------DDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 236 ~~~~l~~~~---------~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
|..+++|+. +.--...+.++.++|||||.+++.=++..+
T Consensus 69 s~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred eechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 998888743 122356888999999999999998776543
No 287
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=94.64 E-value=0.11 Score=46.55 Aligned_cols=115 Identities=14% Similarity=0.198 Sum_probs=76.4
Q ss_pred CccEEEeecCccHHHHHHHHhc-------C--------------CcEEEEeCCHH--HHHHHHHHcCcCC----------
Q 023562 158 HLVALDCGSGIGRITKNLLIRY-------F--------------NEVDLLEPVSH--FLDAARESLAPEN---------- 204 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~-------~--------------~~v~~vD~S~~--~l~~A~~~~~~~~---------- 204 (280)
..+||-||.|.|.-...++... . -+|++||+.+. .++.....+....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4699999999997666665432 0 06999998765 4555555444430
Q ss_pred C-CCCCCCcceeEEEccCCCCCCCC-------CcEEEEEccchhhcCC---hhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 205 H-MAPDMHKATNFFCVPLQDFTPET-------GRYDVIWVQWCIGHLT---DDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 205 ~-~~~~~~~~i~~~~~d~~~~~~~~-------~~fDlV~~~~~l~~~~---~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
. .......+++|.+.|+-....++ ...|+|...++++-+= ...-.+|+.++-..++||..++|+|--.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 0 11222457889999987765321 2467887776654321 1245789999999999999999998654
No 288
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.55 E-value=0.14 Score=47.40 Aligned_cols=105 Identities=21% Similarity=0.160 Sum_probs=66.5
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc-----CCCCCCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-----LQDFTPE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d-----~~~~~~~ 227 (280)
..++.+||..|||. |..+..+++.... .+++++.++..++.+++..... .+.+...+ +.++. .
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~---------vi~~~~~~~~~~~l~~~~-~ 251 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAE---------TINFEEVDDVVEALRELT-G 251 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcE---------EEcCCcchHHHHHHHHHc-C
Confidence 44667899999988 8888888877554 5999999999999998763210 11111111 11111 1
Q ss_pred CCcEEEEEccch-------h----hcC--ChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 228 TGRYDVIWVQWC-------I----GHL--TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 228 ~~~fDlV~~~~~-------l----~~~--~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
...+|+|+-.-. + .|. +..+....+..+.+.|+|+|.++...
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 236888876421 0 111 00122467888999999999998874
No 289
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.47 E-value=0.091 Score=47.83 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=39.2
Q ss_pred CCCccEEEeecCccHHHHHHHHhc---------CCcEEEEeCCHHHHHHHHHHcCc
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY---------FNEVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~---------~~~v~~vD~S~~~l~~A~~~~~~ 202 (280)
..+..++|+|.|.|.++..+++.. ..++..||+|++..+.=+++++.
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 346789999999999999887642 22899999999999998888876
No 290
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.44 E-value=0.13 Score=44.10 Aligned_cols=95 Identities=17% Similarity=0.122 Sum_probs=58.1
Q ss_pred HHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHh--cCCcEEEEeCCHHHHHHHHHHcCcC-CCCCCCCCcceeEE
Q 023562 141 FLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFF 217 (280)
Q Consensus 141 ~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~--~~~~v~~vD~S~~~l~~A~~~~~~~-~~~~~~~~~~i~~~ 217 (280)
.|.+++.+.-+.. .++..++||||.|.--+-.-+--+ ++ +.+|.|+++..++.|+..+..+ ++ ...++..
T Consensus 63 ~laDLL~s~~g~~-~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l-----~~~I~lr 135 (292)
T COG3129 63 HLADLLASTSGQI-PGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGL-----ERAIRLR 135 (292)
T ss_pred HHHHHHHhcCCCC-CcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcch-----hhheeEE
Confidence 4455554433321 245678999999986554322222 33 6999999999999999988765 22 3334433
Q ss_pred Ec-cCC----CCCCCCCcEEEEEccchhhc
Q 023562 218 CV-PLQ----DFTPETGRYDVIWVQWCIGH 242 (280)
Q Consensus 218 ~~-d~~----~~~~~~~~fDlV~~~~~l~~ 242 (280)
.- |-. ...-..+.||+++|+--||-
T Consensus 136 ~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 136 RQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred eccCccccccccccccceeeeEecCCCcch
Confidence 32 111 11112468999999987763
No 291
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.36 E-value=0.13 Score=46.50 Aligned_cols=97 Identities=22% Similarity=0.226 Sum_probs=63.4
Q ss_pred EEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-CCcEEEEEcc--
Q 023562 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQ-- 237 (280)
Q Consensus 161 VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fDlV~~~-- 237 (280)
|+|+-||.|.++..+.+.++.-+.++|+++.+++.-+.++.. .+...|+.++... ...+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~------------~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN------------KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC------------CCCccChhhhhhhhCCCcCEEEecCC
Confidence 689999999999999888888788899999999998888753 2244666665421 1358988743
Q ss_pred ---chh-h---cCChhhHHHHHH---HHHHcCCCCcEEEEEeccC
Q 023562 238 ---WCI-G---HLTDDDFVSFFK---RAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 238 ---~~l-~---~~~~~d~~~~l~---~~~r~LkpGG~lii~e~~~ 272 (280)
++. . -+.+ ....++. ++.+.++|. +++.|||.
T Consensus 69 Cq~fS~ag~~~~~~d-~r~~L~~~~~r~i~~~~P~--~~v~ENV~ 110 (315)
T TIGR00675 69 CQPFSIAGKRKGFED-TRGTLFFEIVRILKEKKPK--FFLLENVK 110 (315)
T ss_pred CcccchhcccCCCCC-chhhHHHHHHHHHhhcCCC--EEEeeccH
Confidence 111 1 1111 1112222 333445774 77889984
No 292
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=94.32 E-value=0.055 Score=50.11 Aligned_cols=57 Identities=7% Similarity=0.182 Sum_probs=51.3
Q ss_pred cceeEEEccCCCCC--CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 212 KATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 212 ~~i~~~~~d~~~~~--~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+++++.+++.+.. .+++++|.++..+++.+++++++.+.++++.+.++|||.+++-
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 57899999988863 4468999999999999999999999999999999999999985
No 293
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.25 E-value=0.19 Score=42.62 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=63.8
Q ss_pred CCCCccEEEeecCccHHHHHHHH-h--cCCcEEEEeCCHHHHHHHHHHcCcCC---------------------------
Q 023562 155 NNQHLVALDCGSGIGRITKNLLI-R--YFNEVDLLEPVSHFLDAARESLAPEN--------------------------- 204 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~-~--~~~~v~~vD~S~~~l~~A~~~~~~~~--------------------------- 204 (280)
...+.++-|-.||.|++.--+.- + ...+|.+.|+++.+|+.|++|+.-..
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 45677999999999987553422 2 22289999999999999999874210
Q ss_pred ---------CCCCCCCcceeEEEccCCCCC-----CCCCcEEEEEccchhhcCCh-------hhHHHHHHHHHHcCCCCc
Q 023562 205 ---------HMAPDMHKATNFFCVPLQDFT-----PETGRYDVIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGG 263 (280)
Q Consensus 205 ---------~~~~~~~~~i~~~~~d~~~~~-----~~~~~fDlV~~~~~l~~~~~-------~d~~~~l~~~~r~LkpGG 263 (280)
+...+........++|+.+.. ......|+|+.---..++++ .-...++..++.+|-+++
T Consensus 129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 001111223567788887742 11234699986543333321 235679999999996566
Q ss_pred EEEEEe
Q 023562 264 FFVLKE 269 (280)
Q Consensus 264 ~lii~e 269 (280)
++.+++
T Consensus 209 VV~v~~ 214 (246)
T PF11599_consen 209 VVAVSD 214 (246)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 666643
No 294
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.06 E-value=0.46 Score=45.74 Aligned_cols=104 Identities=13% Similarity=0.018 Sum_probs=62.7
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc------CCCCCC-
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP------LQDFTP- 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d------~~~~~~- 226 (280)
..++.+|+-+|||. |..+...+......|+++|.++.-++.+++.-... ..++....+ +.....
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~--------v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEF--------LELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeE--------EEeccccccccccchhhhcchh
Confidence 34688999999997 44555555554447999999999999998742210 001110000 000000
Q ss_pred ---------C--CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 227 ---------E--TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 227 ---------~--~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
. -..+|+|+..-....-+ ....+.+++.+.+||||.++..
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~--aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKP--APKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCccc--CcchHHHHHHHhcCCCCEEEEE
Confidence 0 13589998765432211 1123359999999999998876
No 295
>PTZ00357 methyltransferase; Provisional
Probab=94.06 E-value=0.23 Score=48.95 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=65.1
Q ss_pred ccEEEeecCccHHHHHHHHh----cCC-cEEEEeCCHHHHHHHHHHcCcCCCC---CCCCCcceeEEEccCCCCCCCC--
Q 023562 159 LVALDCGSGIGRITKNLLIR----YFN-EVDLLEPVSHFLDAARESLAPENHM---APDMHKATNFFCVPLQDFTPET-- 228 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~----~~~-~v~~vD~S~~~l~~A~~~~~~~~~~---~~~~~~~i~~~~~d~~~~~~~~-- 228 (280)
..|+-+|+|-|-+....++. +.. +|.+||-|+..+.....+......+ ....+..++++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46899999999876655443 222 7999999966554444442221111 0112456999999999985331
Q ss_pred ---------CcEEEEEccchhhcCChhhH-HHHHHHHHHcCCC----CcE
Q 023562 229 ---------GRYDVIWVQWCIGHLTDDDF-VSFFKRAKVGLKP----GGF 264 (280)
Q Consensus 229 ---------~~fDlV~~~~~l~~~~~~d~-~~~l~~~~r~Lkp----GG~ 264 (280)
+++|+||+- .|.-|.|.++ .+-|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 379999863 3344445444 4566666666665 776
No 296
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.97 E-value=0.08 Score=47.38 Aligned_cols=97 Identities=21% Similarity=0.236 Sum_probs=64.4
Q ss_pred cEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---CCCCcEEEEEc
Q 023562 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVIWV 236 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fDlV~~ 236 (280)
+++|+=||.|.++..+.+.++..+.++|+++.+.+.-+.++. .....|+.++. .+. .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------------~~~~~Di~~~~~~~l~~-~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------------EVICGDITEIDPSDLPK-DVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------------EEEESHGGGCHHHHHHH-T-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------------ccccccccccccccccc-cceEEEe
Confidence 699999999999999999998899999999999999988873 45777887765 222 5999984
Q ss_pred cc---hhhc------CCh--hhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 237 QW---CIGH------LTD--DDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 237 ~~---~l~~------~~~--~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.. .+.. +.+ ..+-.-+-++.+.++|. +++.|||.
T Consensus 68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk--~~~~ENV~ 112 (335)
T PF00145_consen 68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPK--YFLLENVP 112 (335)
T ss_dssp E---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-S--EEEEEEEG
T ss_pred ccCCceEeccccccccccccchhhHHHHHHHhhccce--EEEecccc
Confidence 31 1111 111 11222333344556884 45669984
No 297
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.89 E-value=0.67 Score=44.54 Aligned_cols=109 Identities=14% Similarity=0.042 Sum_probs=69.0
Q ss_pred CCCCccEEEeecCccHHHHHHHHhc-----CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~-----~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 225 (280)
+.+..+|.|-.||+|.+.....+.. -..+.|.|+++.....|+.+.--.+... ++....+|-..-+
T Consensus 184 ~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----~~~i~~~dtl~~~~~~~ 258 (489)
T COG0286 184 PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----DANIRHGDTLSNPKHDD 258 (489)
T ss_pred CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----cccccccccccCCcccc
Confidence 3455699999999998766544331 1359999999999999998876654421 2233333322111
Q ss_pred -CCCCcEEEEEccchhh---cCC-------------------h-hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 226 -PETGRYDVIWVQWCIG---HLT-------------------D-DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 226 -~~~~~fDlV~~~~~l~---~~~-------------------~-~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
...++||.|+++--+. +.. . ...-.+++.+...|+|||...|.
T Consensus 259 ~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 259 KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 1336799998773221 110 0 12268999999999998865543
No 298
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=93.81 E-value=0.92 Score=39.83 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=75.7
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCC-HHHHHHHHHHcCcCCCCCCCCCcceeEEE
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV-SHFLDAARESLAPENHMAPDMHKATNFFC 218 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S-~~~l~~A~~~~~~~~~~~~~~~~~i~~~~ 218 (280)
.++.+.+...+. . ....|+.+|||-=.-...+.. ...+..+|++ |++++.-++.+...+. ....+..++.
T Consensus 68 r~~D~~i~~~~~---~-g~~qvV~LGaGlDTr~~Rl~~--~~~~~~~EvD~P~v~~~K~~~l~~~~~---~~~~~~~~v~ 138 (260)
T TIGR00027 68 RFFDDFLLAAVA---A-GIRQVVILGAGLDTRAYRLPW--PDGTRVFEVDQPAVLAFKEKVLAELGA---EPPAHRRAVP 138 (260)
T ss_pred HHHHHHHHHHHh---c-CCcEEEEeCCccccHHHhcCC--CCCCeEEECCChHHHHHHHHHHHHcCC---CCCCceEEec
Confidence 445555544332 1 234699999998665554432 2234455543 4466655566654221 1235677888
Q ss_pred ccCCC-CC-------CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 219 VPLQD-FT-------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 219 ~d~~~-~~-------~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.|+.+ +. +.+..--++++-.++.|+++++...+++.+.+...||+.+++.
T Consensus 139 ~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d 196 (260)
T TIGR00027 139 VDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFD 196 (260)
T ss_pred cCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 88751 11 1123445777889999999999999999999999899988875
No 299
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=93.80 E-value=0.61 Score=42.61 Aligned_cols=108 Identities=18% Similarity=0.089 Sum_probs=70.9
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-----cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-----~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 225 (280)
..++.+|||+.+.+|.-+..+++.... .|.+-|.++.-+........... ..+..+...++..++
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~------~~~~~v~~~~~~~~p~~~~ 226 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP------SPNLLVTNHDASLFPNIYL 226 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC------Ccceeeecccceecccccc
Confidence 678899999999999999989876442 59999999988887776664422 123333334443332
Q ss_pred -----CCCCcEEEEEcc-----c-hhhcCCh--------------hhH-HHHHHHHHHcCCCCcEEEEE
Q 023562 226 -----PETGRYDVIWVQ-----W-CIGHLTD--------------DDF-VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 226 -----~~~~~fDlV~~~-----~-~l~~~~~--------------~d~-~~~l~~~~r~LkpGG~lii~ 268 (280)
.....||=|++- . ++.+.++ ..+ ..++.+..++||+||.++.+
T Consensus 227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198|consen 227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 122468877632 2 1222111 012 36888999999999999876
No 300
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.72 E-value=0.17 Score=46.24 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=73.1
Q ss_pred CccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-CCCCcEEEEE
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fDlV~ 235 (280)
+.+|+|.=+|+|.=++.++..... .|+.-|+||.+.+.+++|...+. ..+...+..|...+- .....||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~------~~~~~v~n~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS------GEDAEVINKDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC------cccceeecchHHHHHHhcCCCccEEe
Confidence 578999999999888877766444 79999999999999999988751 233444555654442 1136788874
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.- -+. ....|+..+.+.++.||++.++-
T Consensus 127 iD----PFG--SPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 127 ID----PFG--SPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred cC----CCC--CCchHHHHHHHHhhcCCEEEEEe
Confidence 32 122 33479999999999999999974
No 301
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.62 E-value=0.66 Score=44.21 Aligned_cols=45 Identities=18% Similarity=0.010 Sum_probs=39.6
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~ 201 (280)
...+++|+=||.|.+...+-..++..|.++|+++.+.+.-+.++.
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~ 131 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWY 131 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcC
Confidence 356999999999999999988888888999999999988888763
No 302
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.26 E-value=0.25 Score=44.37 Aligned_cols=102 Identities=18% Similarity=0.086 Sum_probs=65.4
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cCCCC------C
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDF------T 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~~~~------~ 225 (280)
.+.+.+||-+|+|+ |..+...++. +..+|..+|+++.-|+.|++ +..... ...... +..++ .
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~--------~~~~~~~~~~~~~~~v~~~ 237 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVT--------DPSSHKSSPQELAELVEKA 237 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEE--------eeccccccHHHHHHHHHhh
Confidence 56788999999997 4455544443 55599999999999999999 433211 000000 11111 0
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
.....+|+.+.+..+ +..++.....+|+||.+++..+-..
T Consensus 238 ~g~~~~d~~~dCsG~--------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 238 LGKKQPDVTFDCSGA--------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred ccccCCCeEEEccCc--------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 122347877765443 2567777889999999888876543
No 303
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=93.26 E-value=0.068 Score=47.34 Aligned_cols=106 Identities=23% Similarity=0.175 Sum_probs=69.1
Q ss_pred CCccEEEeecCccHHHH-HHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITK-NLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~-~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.+..|+|+=+|.|+++. .+...+...|.++|.+|..++..+.++..++. ..+...+.+|-.. +-+....|-|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V-----~~r~~i~~gd~R~-~~~~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV-----MDRCRITEGDNRN-PKPRLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch-----HHHHHhhhccccc-cCccccchhee
Confidence 34689999999999999 67777888999999999999999998877543 2223333344322 22235666665
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCC-Cc-EEEEEeccCCC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKP-GG-FFVLKENIARS 274 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~Lkp-GG-~lii~e~~~~~ 274 (280)
.- .+|..+ +-.-.+.++||| || ++-|.||+...
T Consensus 268 LG----LlPSse--~~W~~A~k~Lk~eggsilHIHenV~~s 302 (351)
T KOG1227|consen 268 LG----LLPSSE--QGWPTAIKALKPEGGSILHIHENVKDS 302 (351)
T ss_pred ec----cccccc--cchHHHHHHhhhcCCcEEEEecccccc
Confidence 43 233211 333445566666 44 66677998643
No 304
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.08 E-value=0.7 Score=42.31 Aligned_cols=97 Identities=16% Similarity=0.076 Sum_probs=62.7
Q ss_pred CccEEEeecCc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cC-CC-CCCC-CCcE
Q 023562 158 HLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PL-QD-FTPE-TGRY 231 (280)
Q Consensus 158 ~~~VLDlGcG~-G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~-~~-~~~~-~~~f 231 (280)
+.+|+=+|||+ |.++..+++. +...|..+|.++.-++.|++....... ..... +. .. .... ...+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~---------~~~~~~~~~~~~~~~t~g~g~ 239 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVV---------VNPSEDDAGAEILELTGGRGA 239 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEe---------ecCccccHHHHHHHHhCCCCC
Confidence 34899999997 5555555554 445899999999999999996543210 00001 00 00 0111 1368
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|+++-+-. ....+..+.++++|||.+.+.-..
T Consensus 240 D~vie~~G--------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 240 DVVIEAVG--------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CEEEECCC--------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 99985533 115889999999999999886433
No 305
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.07 E-value=0.19 Score=42.44 Aligned_cols=105 Identities=10% Similarity=0.069 Sum_probs=54.5
Q ss_pred CCccEEEeecCccHHHHHHHHh---c-C-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------
Q 023562 157 QHLVALDCGSGIGRITKNLLIR---Y-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~---~-~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------ 225 (280)
+|..|+|+|.-.|.-+..++.. . . .+|.++|+....... ..++.. +...+++++.+|-.+..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~h-----p~~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESH-----PMSPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG---------TTEEEEES-SSSTHHHHTSG
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhc-----cccCceEEEECCCCCHHHHHHHH
Confidence 4679999999999888766542 1 2 389999985333321 111111 12468999999876542
Q ss_pred -C-CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 226 -P-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 226 -~-~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
. ......+|+.-.. |.. +...+.|+....+++||+++++-|.+
T Consensus 105 ~~~~~~~~vlVilDs~--H~~-~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 105 ELASPPHPVLVILDSS--HTH-EHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp SS----SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred HhhccCCceEEEECCC--ccH-HHHHHHHHHhCccCCCCCEEEEEecc
Confidence 1 0123345443221 211 25567888899999999999886543
No 306
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=93.05 E-value=0.088 Score=45.33 Aligned_cols=82 Identities=13% Similarity=0.171 Sum_probs=46.0
Q ss_pred ccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH---cCcCCCCCCCCCcceeEEEccCCCC-CCCCCcEEEE
Q 023562 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES---LAPENHMAPDMHKATNFFCVPLQDF-TPETGRYDVI 234 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~---~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fDlV 234 (280)
.+|||+-+|-|.-+.-++..|. +|+++|-||.+-...+.- .............+++.+.+|..++ ..++.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 4899999999999997776665 699999999876555432 2111100001124789999998875 3445799999
Q ss_pred Eccchhh
Q 023562 235 WVQWCIG 241 (280)
Q Consensus 235 ~~~~~l~ 241 (280)
+.--.|.
T Consensus 156 Y~DPMFp 162 (234)
T PF04445_consen 156 YFDPMFP 162 (234)
T ss_dssp EE--S--
T ss_pred EECCCCC
Confidence 9654433
No 307
>PRK11524 putative methyltransferase; Provisional
Probab=92.81 E-value=0.41 Score=42.51 Aligned_cols=58 Identities=17% Similarity=0.051 Sum_probs=45.7
Q ss_pred HHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCc
Q 023562 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~ 202 (280)
..++.+++... ..++..|||.=||+|..+.... +...+..|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~-----S~~GD~VLDPF~GSGTT~~AA~-~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILAS-----SNPGDIVLDPFAGSFTTGAVAK-ASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 46666666532 3577899999999999988555 4444699999999999999999754
No 308
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.74 E-value=0.78 Score=34.88 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=59.7
Q ss_pred CccEEEeecCcc-HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-CCcEEEEE
Q 023562 158 HLVALDCGSGIG-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (280)
Q Consensus 158 ~~~VLDlGcG~G-~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fDlV~ 235 (280)
.++|+++|-|.= ..+..|.+++++ |+++|+++. +. +..+++...|+++-... -...|+|+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~d-v~atDI~~~-------~a----------~~g~~~v~DDitnP~~~iY~~A~lIY 75 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFD-VLATDINEK-------TA----------PEGLRFVVDDITNPNISIYEGADLIY 75 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCc-EEEEecccc-------cC----------cccceEEEccCCCccHHHhhCcccee
Confidence 459999998876 356667777876 999999876 11 23478899998774321 13578888
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (280)
+... +++++..+-.+++.++-.-+|
T Consensus 76 SiRp-----ppEl~~~ildva~aVga~l~I 100 (129)
T COG1255 76 SIRP-----PPELQSAILDVAKAVGAPLYI 100 (129)
T ss_pred ecCC-----CHHHHHHHHHHHHhhCCCEEE
Confidence 8654 468888888888876554443
No 309
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=92.46 E-value=0.65 Score=40.43 Aligned_cols=122 Identities=14% Similarity=0.162 Sum_probs=66.9
Q ss_pred HHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHH---Hhc-C--CcEEEEeCC------------------------
Q 023562 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL---IRY-F--NEVDLLEPV------------------------ 189 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~---~~~-~--~~v~~vD~S------------------------ 189 (280)
..|..++...+. ..-++.|+|+||-.|..+..+. +.. . .++.++|.=
T Consensus 60 ~~L~~~~~~v~~---~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~ 136 (248)
T PF05711_consen 60 DNLYQAVEQVLA---EDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNG 136 (248)
T ss_dssp HHHHHHHHHCCH---TTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCH
T ss_pred HHHHHHHHHHHh---cCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhccc
Confidence 344555544332 2345789999999998766442 221 1 156666521
Q ss_pred --HHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-C-CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEE
Q 023562 190 --SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (280)
Q Consensus 190 --~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (280)
...++..++++...++. ..++.++.+.+.+. + .+..++-++.+-.-+. +.....|..++..|.|||+|
T Consensus 137 ~~~~s~e~V~~n~~~~gl~----~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY----esT~~aLe~lyprl~~GGiI 208 (248)
T PF05711_consen 137 YLAVSLEEVRENFARYGLL----DDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY----ESTKDALEFLYPRLSPGGII 208 (248)
T ss_dssp HCTHHHHHHHHCCCCTTTS----STTEEEEES-HHHHCCC-TT--EEEEEE---SH----HHHHHHHHHHGGGEEEEEEE
T ss_pred ccccCHHHHHHHHHHcCCC----cccEEEECCcchhhhccCCCccEEEEEEeccch----HHHHHHHHHHHhhcCCCeEE
Confidence 12466666776654431 35789999987553 2 1223444443322111 13467899999999999999
Q ss_pred EEEeccC
Q 023562 266 VLKENIA 272 (280)
Q Consensus 266 ii~e~~~ 272 (280)
+|.|...
T Consensus 209 i~DDY~~ 215 (248)
T PF05711_consen 209 IFDDYGH 215 (248)
T ss_dssp EESSTTT
T ss_pred EEeCCCC
Confidence 9988654
No 310
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.39 E-value=0.11 Score=48.93 Aligned_cols=102 Identities=12% Similarity=0.094 Sum_probs=74.0
Q ss_pred CCCccEEEeecCccHHHHHHHHhcC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCC
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~ 229 (280)
.++.+|||.=|++|.-++..+.... ..|++.|.++..++..+++...++. ...+.....|+.-+- ....
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----~~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----EDIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----hhhcccccchHHHHHHhcccccc
Confidence 4567999999999999888887643 3899999999999999999877533 233444445543321 1136
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.||+|-.- -+. ....||..+.+.++.||+++++
T Consensus 183 ~FDvIDLD----PyG--s~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 183 FFDVIDLD----PYG--SPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred ccceEecC----CCC--CccHHHHHHHHHhhcCCEEEEE
Confidence 79988543 111 2237999999999999999997
No 311
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.34 E-value=0.59 Score=42.35 Aligned_cols=96 Identities=21% Similarity=0.130 Sum_probs=57.0
Q ss_pred CCccEEEeecC-ccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG-~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
++.+||-.||| .|..+..+++. +...|.++|.+++-++.+++.-... -++....++.++....+.+|+|
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~---------vi~~~~~~~~~~~~~~g~~D~v 239 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK---------LVNPQNDDLDHYKAEKGYFDVS 239 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE---------EecCCcccHHHHhccCCCCCEE
Confidence 56788888874 23344445544 4446999999999999988742211 0111111222221112358888
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+-.-. . ...+..+.+.|++||.+++.-
T Consensus 240 id~~G-----~---~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 240 FEVSG-----H---PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EECCC-----C---HHHHHHHHHHhhcCCEEEEEc
Confidence 75422 1 146677888999999998864
No 312
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.30 E-value=0.37 Score=40.47 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=39.5
Q ss_pred hHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 023562 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (280)
Q Consensus 138 ~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~ 198 (280)
+..++.+++... ..++..|||.=||+|..+....+.+- +..|+|+++...+.|++
T Consensus 177 P~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhh-----hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 346666666543 34678999999999999986665544 69999999999998874
No 313
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.11 E-value=1.5 Score=39.00 Aligned_cols=93 Identities=24% Similarity=0.188 Sum_probs=60.2
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-C-----CCC
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-----TPE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-----~~~ 227 (280)
..++.+||..|+| .|..+..+++....+|+.++.++...+.+++.-.. .....-.. . ...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~-------------~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGAD-------------EVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCC-------------EEEcCCCcCHHHHHHHhc
Confidence 3456788888876 47777777776555699999999999888653211 11111110 0 112
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
...+|+|+.+... ...+..+.+.|+++|.++..
T Consensus 230 ~~~~D~vid~~g~--------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 230 GGGFDVIFDFVGT--------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred CCCceEEEECCCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 3579988754221 14677888999999999875
No 314
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=91.90 E-value=0.075 Score=49.21 Aligned_cols=65 Identities=14% Similarity=0.079 Sum_probs=51.2
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 224 (280)
.+++..|.|+-||.|-++..++.++ ..|++.|.++++++..+.+++.+.+. ..++..+..|..++
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~----~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVD----PSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccc----hhheeeecccHHHH
Confidence 3467889999999999999998887 46999999999999999998875431 22366666665443
No 315
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.43 E-value=0.7 Score=35.29 Aligned_cols=86 Identities=21% Similarity=0.149 Sum_probs=58.5
Q ss_pred CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-----C-CCCCcEEEEEccchh
Q 023562 167 GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-----T-PETGRYDVIWVQWCI 240 (280)
Q Consensus 167 G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-----~-~~~~~fDlV~~~~~l 240 (280)
|.|..+..+++....+|+++|.++.-++.+++.-.. .++..+-.++ . .....+|+|+-+-.-
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~------------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD------------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES------------EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc------------ccccccccccccccccccccccceEEEEecCc
Confidence 568888888887667899999999999999875422 1111111111 0 122479999865331
Q ss_pred hcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 241 GHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 241 ~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
. ..++....+|+|+|.+++.-...
T Consensus 69 ------~--~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 ------G--DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ------H--HHHHHHHHHEEEEEEEEEESSTS
T ss_pred ------H--HHHHHHHHHhccCCEEEEEEccC
Confidence 1 58888999999999999875443
No 316
>PRK13699 putative methylase; Provisional
Probab=91.02 E-value=0.92 Score=38.98 Aligned_cols=58 Identities=21% Similarity=0.153 Sum_probs=44.7
Q ss_pred HHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCc
Q 023562 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (280)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~ 202 (280)
..++..++... ..++..|||.=||+|..+....+.+. +..|+|+++...+.+.+++..
T Consensus 150 ~~l~~~~i~~~-----s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 150 VTSLQPLIESF-----THPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHHHh-----CCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 35566555432 34677999999999999886665544 699999999999999988764
No 317
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.97 E-value=1.2 Score=36.43 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=56.5
Q ss_pred eecCccHHHHHHHHhcC-C-cEE--EEeCCHHHHHHHH---HHcCcCCCCCCCCCccee-EEEccCCCCC----CCCCcE
Q 023562 164 CGSGIGRITKNLLIRYF-N-EVD--LLEPVSHFLDAAR---ESLAPENHMAPDMHKATN-FFCVPLQDFT----PETGRY 231 (280)
Q Consensus 164 lGcG~G~~s~~l~~~~~-~-~v~--~vD~S~~~l~~A~---~~~~~~~~~~~~~~~~i~-~~~~d~~~~~----~~~~~f 231 (280)
||=|.=.++..|++... . +++ ..|..+...+.-. .++.... ...+. .+..|++.+. ...++|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~------~~g~~V~~~VDat~l~~~~~~~~~~F 76 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR------ELGVTVLHGVDATKLHKHFRLKNQRF 76 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh------hcCCccccCCCCCcccccccccCCcC
Confidence 45556566777776644 2 444 4454444433322 2222210 11122 2445666654 234789
Q ss_pred EEEEccchhhcCC------h-------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 232 DVIWVQWCIGHLT------D-------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 232 DlV~~~~~l~~~~------~-------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|.|+-++- |.. . .-+..|++.+.++|+++|.|.++
T Consensus 77 DrIiFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 77 DRIIFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred CEEEEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99998865 333 1 12578999999999999999887
No 318
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=90.96 E-value=0.56 Score=43.09 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=34.5
Q ss_pred CCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~ 198 (280)
..-..|+|+|.|.|.++..+.-++.-.|.+||-|....+.|+.
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 3446899999999999997766655589999999777776654
No 319
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=90.94 E-value=2.9 Score=37.73 Aligned_cols=92 Identities=13% Similarity=-0.055 Sum_probs=57.5
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+||-.|+| .|..+..+++....+|++++.++.-++.+++.-... ..+..+. ..+.+|+
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~--------------vi~~~~~--~~~~~d~ 226 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS--------------AGGAYDT--PPEPLDA 226 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce--------------ecccccc--CcccceE
Confidence 4567799999864 344445555554446999999999888887753321 0111111 1135787
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
++..... ...+....+.|++||.+++.-.
T Consensus 227 ~i~~~~~--------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 227 AILFAPA--------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEECCCc--------HHHHHHHHHhhCCCcEEEEEec
Confidence 6543321 1467788899999999988644
No 320
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.60 E-value=2.4 Score=36.16 Aligned_cols=98 Identities=20% Similarity=0.146 Sum_probs=60.4
Q ss_pred CCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-C-CCCCCcEE
Q 023562 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYD 232 (280)
Q Consensus 156 ~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fD 232 (280)
.++.+||..|+|. |..+..+++....+|.+++.++...+.++...... .++....+... . ....+.+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADH---------VIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce---------eccCCcCCHHHHHHHhcCCCCC
Confidence 4677999999985 76777777665567999999998888876542110 00000000000 0 01125789
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|+.+..- . ..+..+.+.|+++|.++....
T Consensus 204 ~vi~~~~~------~--~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 204 VVIDAVGG------P--ETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEEECCCC------H--HHHHHHHHhcccCCEEEEEcc
Confidence 99854321 1 356677888999999987643
No 321
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.90 E-value=1.6 Score=39.63 Aligned_cols=96 Identities=24% Similarity=0.132 Sum_probs=56.4
Q ss_pred CCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeC---CHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcE
Q 023562 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEP---VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (280)
Q Consensus 156 ~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~---S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 231 (280)
.++.+||-+|+|. |.++..+++....+|++++. ++.-++.+++.-... +.....++.+.. ..+.+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~----------v~~~~~~~~~~~-~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY----------VNSSKTPVAEVK-LVGEF 239 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE----------ecCCccchhhhh-hcCCC
Confidence 3567899998864 45556566554436999986 677777776532110 111111111101 12468
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|+|+-.-. . . ..+....+.|++||.+++.-.
T Consensus 240 d~vid~~g-----~-~--~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 240 DLIIEATG-----V-P--PLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CEEEECcC-----C-H--HHHHHHHHHccCCcEEEEEec
Confidence 88876532 1 1 367788899999999987643
No 322
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.74 E-value=0.97 Score=45.09 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=63.7
Q ss_pred CCccEEEeecCccHHHHHHHHhc-------C-----C-cEEEEeCC---HHHHHHHHH-----------HcCcC-----C
Q 023562 157 QHLVALDCGSGIGRITKNLLIRY-------F-----N-EVDLLEPV---SHFLDAARE-----------SLAPE-----N 204 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~-------~-----~-~v~~vD~S---~~~l~~A~~-----------~~~~~-----~ 204 (280)
+..+|+|+|=|+|......++.. . . +++.+|.. .+.+..+-+ ..... +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 44799999999998766555322 2 1 67888853 333333322 11110 1
Q ss_pred CC---CCCCCcceeEEEccCCCCCC-CCCcEEEEEcc-chhhcCChhhH-HHHHHHHHHcCCCCcEEEE
Q 023562 205 HM---APDMHKATNFFCVPLQDFTP-ETGRYDVIWVQ-WCIGHLTDDDF-VSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 205 ~~---~~~~~~~i~~~~~d~~~~~~-~~~~fDlV~~~-~~l~~~~~~d~-~~~l~~~~r~LkpGG~lii 267 (280)
+. ...-...++.+.+|+.+.-. -...||+++.- ++-..-+ +-+ ..+++.++++++|||.+.-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np-~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNP-DMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccCh-hhccHHHHHHHHHHhCCCCEEEE
Confidence 00 00012355677778765321 12579999876 3333322 222 6899999999999999873
No 323
>PRK11524 putative methyltransferase; Provisional
Probab=89.67 E-value=0.25 Score=43.90 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=37.8
Q ss_pred ceeEEEccCCCC--CCCCCcEEEEEcc--chh--hc--C----Chh----hHHHHHHHHHHcCCCCcEEEEE
Q 023562 213 ATNFFCVPLQDF--TPETGRYDVIWVQ--WCI--GH--L----TDD----DFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 213 ~i~~~~~d~~~~--~~~~~~fDlV~~~--~~l--~~--~----~~~----d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+..++++|..++ ..++++||+|++. +.+ .+ . ... -+..++..+.++|||||.|++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456778887664 2456799999986 221 10 0 001 1357999999999999999874
No 324
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.64 E-value=2.5 Score=31.54 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=55.6
Q ss_pred cCccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCcEEEEEccc
Q 023562 166 SGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDVIWVQW 238 (280)
Q Consensus 166 cG~G~~s~~l~~~---~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fDlV~~~~ 238 (280)
||.|.++..+++. ....|+.+|.++..++.+++.. ..++.+|..+.. ..-.++|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-------------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-------------VEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-------------SEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-------------cccccccchhhhHHhhcCccccCEEEEcc
Confidence 6777777777653 3336999999999998887653 567888887653 2235788777654
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
. +++....+....+.+.|...++..
T Consensus 71 ~-----~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 71 D-----DDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp S-----SHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred C-----CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 3 234344555666777787777664
No 325
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=89.61 E-value=1.6 Score=39.24 Aligned_cols=95 Identities=22% Similarity=0.236 Sum_probs=57.5
Q ss_pred CCccEEEeecCc-cHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~-G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
++.+||-.|||. |..+..+++.. ...+++++.++...+.+++.-.. .+ +.....++..+....+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~-~v--------i~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGAD-ET--------VNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCC-EE--------EcCCchhhhhhhccCCCccEE
Confidence 567888888775 66666666654 33689999999988876653211 00 110101111222222458999
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+.+... ...++.+.+.|+++|.++..
T Consensus 236 ld~~g~--------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 236 FEASGA--------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred EECCCC--------HHHHHHHHHHHhcCCEEEEE
Confidence 865331 13567788999999998865
No 326
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=88.28 E-value=7.4 Score=33.06 Aligned_cols=118 Identities=20% Similarity=0.226 Sum_probs=70.0
Q ss_pred chHHHHHHHHhccCCCccCCCCccEEEeecCccH--HHHHHH--Hh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCC
Q 023562 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGR--ITKNLL--IR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (280)
Q Consensus 137 ~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~--~s~~l~--~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~ 211 (280)
...+||..+... .+...+++..|+-|. .+..|+ .+ -..++.+|-+.+.-+...++.+...++ .
T Consensus 28 ~~aEfISAlAAG-------~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~-----~ 95 (218)
T PF07279_consen 28 GVAEFISALAAG-------WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL-----S 95 (218)
T ss_pred CHHHHHHHHhcc-------ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc-----c
Confidence 445677766642 344678999766542 344443 33 222688888888877777777765443 3
Q ss_pred cceeEEEccC-CCCCCCCCcEEEEEccchhhcCChhhHH-HHHHHHHHcCCCCcEEEEEeccCC
Q 023562 212 KATNFFCVPL-QDFTPETGRYDVIWVQWCIGHLTDDDFV-SFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 212 ~~i~~~~~d~-~~~~~~~~~fDlV~~~~~l~~~~~~d~~-~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
..++|+.++- +++...-...|+++...-. .+.. .+|+.+. +.|.|-+++..|...
T Consensus 96 ~~vEfvvg~~~e~~~~~~~~iDF~vVDc~~-----~d~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 96 DVVEFVVGEAPEEVMPGLKGIDFVVVDCKR-----EDFAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred ccceEEecCCHHHHHhhccCCCEEEEeCCc-----hhHHHHHHHHhc--cCCCceEEEEecccc
Confidence 4467887763 3332222467887754331 2444 5555433 567789999888765
No 327
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=87.83 E-value=3.2 Score=37.57 Aligned_cols=92 Identities=18% Similarity=0.093 Sum_probs=55.8
Q ss_pred CCCccEEEeecCc-cHHHHHHHHh--cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 156 NQHLVALDCGSGI-GRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 156 ~~~~~VLDlGcG~-G~~s~~l~~~--~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
.++.+||-+|||. |.++..++++ +..+|+++|.++.-++.+++ +... +. . .++. +...+|
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~~------------~~-~--~~~~-~~~g~d 224 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADET------------YL-I--DDIP-EDLAVD 224 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCce------------ee-h--hhhh-hccCCc
Confidence 4577999999754 2334445554 34479999999988888865 2110 00 0 1111 112488
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|+-.-. . ......+....++|++||.+++.-
T Consensus 225 ~viD~~G--~---~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 225 HAFECVG--G---RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred EEEECCC--C---CccHHHHHHHHHhCcCCcEEEEEe
Confidence 8874322 1 012357888889999999998764
No 328
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=87.24 E-value=1.4 Score=39.64 Aligned_cols=99 Identities=13% Similarity=0.105 Sum_probs=68.2
Q ss_pred CCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.+.+|.-+|.|. |..+..++.-....|+.+|+|..-+......+.. +++..-.....+...-.++|+++
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----------rv~~~~st~~~iee~v~~aDlvI 236 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----------RVHTLYSTPSNIEEAVKKADLVI 236 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----------eeEEEEcCHHHHHHHhhhccEEE
Confidence 456888899886 5566666655445799999998888777666533 45566555544443335789998
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
..-.+--.. ...-+.+++.+.||||+.|+=
T Consensus 237 gaVLIpgak--aPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 237 GAVLIPGAK--APKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEEecCCC--CceehhHHHHHhcCCCcEEEE
Confidence 764443333 344688899999999998763
No 329
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=86.48 E-value=0.68 Score=39.46 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=46.2
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 224 (280)
..-|.++|.|+|.+++.+++.+..++..|+.++..+.-.+...+.. ..+..++..|+..+
T Consensus 51 ~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa-------~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA-------PGKLRIHHGDVLRF 110 (326)
T ss_pred cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC-------CcceEEecccccee
Confidence 4579999999999999999998889999999998887766554432 23456666666443
No 330
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=86.45 E-value=2 Score=41.38 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=59.9
Q ss_pred CCCccEEEeecCcc-HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCC------------
Q 023562 156 NQHLVALDCGSGIG-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ------------ 222 (280)
Q Consensus 156 ~~~~~VLDlGcG~G-~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~------------ 222 (280)
.++.+|+-+|||.= ..+..++......|+++|.++.-++.++.. .. +++..+..
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l-Ga------------~~v~v~~~e~g~~~~gYa~~ 228 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM-GA------------EFLELDFKEEGGSGDGYAKV 228 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC------------eEEeccccccccccccceee
Confidence 45689999999875 444445544344699999999988888763 21 11111110
Q ss_pred ---C--------CCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 223 ---D--------FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 223 ---~--------~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
+ +...-..+|+|+..-.+.--+ ...-+.+++.+.+|||+.++-
T Consensus 229 ~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~--aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 229 MSEEFIAAEMELFAAQAKEVDIIITTALIPGKP--APKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred cCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC--CCeeehHHHHhhCCCCCEEEE
Confidence 0 111114689997765433322 222467788999999998763
No 331
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=85.94 E-value=1.7 Score=36.24 Aligned_cols=102 Identities=16% Similarity=0.072 Sum_probs=68.5
Q ss_pred CCccEEEeecCccHHHHHHHHh---cC--CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------
Q 023562 157 QHLVALDCGSGIGRITKNLLIR---YF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~---~~--~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------ 225 (280)
++..|+++|.-.|..+..++.. .. -.|.++|++-..++.+... ...+.|+.++-.+..
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----------~p~i~f~egss~dpai~eqi~ 137 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----------VPDILFIEGSSTDPAIAEQIR 137 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------CCCeEEEeCCCCCHHHHHHHH
Confidence 4568999999999888877653 22 1799999987766544332 245889998766542
Q ss_pred -CCCCcEEEEE-ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 226 -PETGRYDVIW-VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 226 -~~~~~fDlV~-~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.. +.|--|+ |-.+-|++. ..-+.++.+..+|.-|-++++-|.+.
T Consensus 138 ~~~-~~y~kIfvilDsdHs~~--hvLAel~~~~pllsaG~Y~vVeDs~v 183 (237)
T COG3510 138 RLK-NEYPKIFVILDSDHSME--HVLAELKLLAPLLSAGDYLVVEDSNV 183 (237)
T ss_pred HHh-cCCCcEEEEecCCchHH--HHHHHHHHhhhHhhcCceEEEecccc
Confidence 11 1222333 335555544 56678888889999999988876553
No 332
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=85.90 E-value=3.6 Score=37.42 Aligned_cols=98 Identities=13% Similarity=0.046 Sum_probs=60.5
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cCCC-C-CCCCC
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD-F-TPETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~ 229 (280)
..++.+||=.|+ |.|..+..+++....+|.+++.++.-.+.+++.+... .-++.... ++.+ + ....+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~--------~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFD--------EAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCC--------EEEECCCcccHHHHHHHHCCC
Confidence 456778999987 4778888787765556999999998888776433221 11111110 1110 0 01123
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.+|+|+-+-. . ..+..+.+.|++||.+++.-
T Consensus 228 gvD~v~d~vG-------~--~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDNVG-------G--DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEECCC-------H--HHHHHHHHHhccCCEEEEEC
Confidence 6898875322 1 35677888999999998753
No 333
>PRK13699 putative methylase; Provisional
Probab=85.80 E-value=0.86 Score=39.15 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=32.9
Q ss_pred eEEEccCCCC--CCCCCcEEEEEcc--chhh--c-----CCh----hhHHHHHHHHHHcCCCCcEEEE
Q 023562 215 NFFCVPLQDF--TPETGRYDVIWVQ--WCIG--H-----LTD----DDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 215 ~~~~~d~~~~--~~~~~~fDlV~~~--~~l~--~-----~~~----~d~~~~l~~~~r~LkpGG~lii 267 (280)
+++++|..+. .++++++|+|+.. +.+. + +.. +-+..++.+++|+|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3455555443 3556788888866 2111 0 000 1235789999999999998876
No 334
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=85.55 E-value=2.7 Score=39.48 Aligned_cols=87 Identities=13% Similarity=-0.072 Sum_probs=53.1
Q ss_pred CCCccEEEeecCccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~-~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+|+-+|||+=. .....++....+|+++|.++.-++.|+..-. +.. ++.+.- ..+|+|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~-------------~~~--~~~e~v---~~aDVV 261 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGY-------------EVM--TMEEAV---KEGDIF 261 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCC-------------EEc--cHHHHH---cCCCEE
Confidence 357899999999743 3333333323379999999988877765311 111 111111 356998
Q ss_pred EccchhhcCChhhHHHHHHH-HHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKR-AKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~-~~r~LkpGG~lii~ 268 (280)
+..-. . ..++.. ..+.+|+||+++..
T Consensus 262 I~atG-------~-~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 262 VTTTG-------N-KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred EECCC-------C-HHHHHHHHHhcCCCCcEEEEe
Confidence 86532 1 134554 48899999999765
No 335
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=85.45 E-value=7.5 Score=33.59 Aligned_cols=93 Identities=17% Similarity=-0.002 Sum_probs=56.7
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCc-EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEE
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~-v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (280)
..++.+||-.|||. |..+..+++....+ |.+++.+++.++.+++.-..... ... .. .. .....+|
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~--------~~~-~~---~~-~~~~~~d 161 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPV--------AAD-TA---DE-IGGRGAD 161 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccc--------ccc-ch---hh-hcCCCCC
Confidence 45667888888765 55666666654445 99999999988877764211000 000 00 01 1224689
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|+..-.. . ..+....+.|+++|.++..
T Consensus 162 ~vl~~~~~------~--~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 162 VVIEASGS------P--SALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEEEccCC------h--HHHHHHHHHhcCCcEEEEE
Confidence 88754221 1 3667778889999998865
No 336
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=85.29 E-value=2.8 Score=34.48 Aligned_cols=94 Identities=10% Similarity=0.050 Sum_probs=55.0
Q ss_pred ccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---------CCC
Q 023562 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------PET 228 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------~~~ 228 (280)
..|+.+|||-=.....+...... .+.=+|. |.+++.-++.++..+. ....+.+++.+|+.+.. +..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~---~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~ 155 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGA---RPPANYRYVPADLRDDSWIDALPKAGFDP 155 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHH---HHHEESSEEES-TTSHHHHHHHHHCTT-T
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcc---cCCcceeEEeccccchhhHHHHHHhCCCC
Confidence 37999999998887777765322 4555553 4455555555444210 00123567888887531 223
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHH
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAK 256 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~ 256 (280)
..--++++-.++.|+++++...+++.++
T Consensus 156 ~~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 156 DRPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp TSEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CCCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 4567788889999999988888888763
No 337
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=84.55 E-value=8.9 Score=34.83 Aligned_cols=97 Identities=16% Similarity=-0.034 Sum_probs=56.6
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccC----CCCCCCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~----~~~~~~~ 228 (280)
..++.+||-.|||. |..+..+++.... .|+++|.++.-++.+++.-.. .-++....+. .+. ...
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~---------~~i~~~~~~~~~~i~~~-~~~ 243 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGAT---------HTVNSSGTDPVEAIRAL-TGG 243 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc---------eEEcCCCcCHHHHHHHH-hCC
Confidence 44677899888743 4445555555433 599999999999988654211 0011111111 011 112
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
..+|+|+-.-. . ...+....+.+++||.+++.-
T Consensus 244 ~g~d~vid~~g-----~---~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 244 FGADVVIDAVG-----R---PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCCCEEEECCC-----C---HHHHHHHHHHhccCCEEEEEC
Confidence 35888875322 1 135666778999999998764
No 338
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=84.55 E-value=8.8 Score=34.12 Aligned_cols=96 Identities=21% Similarity=0.094 Sum_probs=58.2
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+||-.||| .|..+..+++....+|++++.++..++.+++.-... -+.....+... .. .+.+|+
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~~-~~-~~~~d~ 228 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADE---------VVDSGAELDEQ-AA-AGGADV 228 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcE---------EeccCCcchHH-hc-cCCCCE
Confidence 4456789889887 677777677664446999999999988885432110 00000000000 01 145888
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
++....- ...+..+.+.|+++|.++...
T Consensus 229 vi~~~~~--------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 229 ILVTVVS--------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEECCCc--------HHHHHHHHHhcccCCEEEEEC
Confidence 8754221 135677788999999888753
No 339
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.23 E-value=9.7 Score=33.86 Aligned_cols=95 Identities=20% Similarity=0.134 Sum_probs=57.5
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhcCCc-EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC----CCCC
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~~~~-v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~ 228 (280)
..++.+||-.|+| .|..+..+++....+ +.+++.+++..+.+++.-.. .++..+-.++ ....
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT------------ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe------------EEecCCCCCHHHHHHhcC
Confidence 4466789999865 255666666654444 89999999988887543211 1111110010 1123
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
..+|+|+.+..- ...+..+.+.|+++|.++...
T Consensus 225 ~~vd~v~~~~~~--------~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 225 YGFDVVIEATGV--------PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCcEEEECCCC--------hHHHHHHHHHHhcCCEEEEEe
Confidence 568999864220 146777788899999998753
No 340
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=84.17 E-value=6.7 Score=36.33 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=63.9
Q ss_pred CCCccEEEeecCccHH----HHHHHHh--cCC--cEEEEeC----CHHHHHHHHHHcCcCCCCCCCCCcceeEEEc---c
Q 023562 156 NQHLVALDCGSGIGRI----TKNLLIR--YFN--EVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFCV---P 220 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~----s~~l~~~--~~~--~v~~vD~----S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~---d 220 (280)
.+..+|+|+|.|.|.- ...|+.+ ++. +||+|+. +..-++.+.+++..-. ...+...+|... +
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA---~~lgv~fef~~v~~~~ 185 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFA---RSLGVPFEFHPVVVES 185 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHH---HHcCccEEEEecccCc
Confidence 4567899999999953 3333433 222 8999999 7777877776654321 011233444442 3
Q ss_pred CCCCC-----CCCCcEEEEEccchhhcCChh-----h-HHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 221 LQDFT-----PETGRYDVIWVQWCIGHLTDD-----D-FVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 221 ~~~~~-----~~~~~fDlV~~~~~l~~~~~~-----d-~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
++++. ..++..=+|-+.+.+||+.++ + ...+++ ..+.|+|.-++++-.+..
T Consensus 186 ~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv~~E~ea~ 247 (374)
T PF03514_consen 186 LEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVVLVEQEAD 247 (374)
T ss_pred hhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEEEEeecCC
Confidence 34332 223444444455778888732 1 234554 455789996665544443
No 341
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=84.17 E-value=4.4 Score=35.55 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=27.6
Q ss_pred CCCccEEEeecCccHHHHHHHHhc------CCcEEEEeCCH
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY------FNEVDLLEPVS 190 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~------~~~v~~vD~S~ 190 (280)
.+...++|+|||.|.++.++.+.. ...+..||-..
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 455689999999999999988764 23789999643
No 342
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=83.28 E-value=1.7 Score=41.21 Aligned_cols=105 Identities=19% Similarity=0.167 Sum_probs=68.7
Q ss_pred CCccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC-------CCCC
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-------TPET 228 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------~~~~ 228 (280)
.+..+|-+|-|.|.+...+..... ..+++|++.|.|++.|+.++.-.. ..+.+.+-.|--++ ..++
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q------~~r~~V~i~dGl~~~~~~~k~~~~~ 368 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ------SDRNKVHIADGLDFLQRTAKSQQED 368 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh------hhhhhhhHhhchHHHHHHhhccccc
Confidence 456789999999988886655544 389999999999999998875420 01111221221111 1244
Q ss_pred CcEEEEEcc----chhhc--CChhhH--HHHHHHHHHcCCCCcEEEEE
Q 023562 229 GRYDVIWVQ----WCIGH--LTDDDF--VSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 229 ~~fDlV~~~----~~l~~--~~~~d~--~~~l~~~~r~LkpGG~lii~ 268 (280)
..||+++.. . .|- .++.++ +.++..+...|.|.|.|++-
T Consensus 369 ~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 369 ICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred cCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 689999742 2 222 233333 57999999999999999774
No 343
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=83.26 E-value=15 Score=32.72 Aligned_cols=96 Identities=11% Similarity=0.037 Sum_probs=58.9
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cCCCC--CCCCC
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDF--TPETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~~~~--~~~~~ 229 (280)
..++.+||=.|+ |.|..+..+++....+|.+++.++.-.+.+++. ... .-++.... +.... ....+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~l-Ga~--------~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKL-GFD--------VAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCC--------EEEeccccccHHHHHHHhCCC
Confidence 456778988884 577788878776554799999999888888653 211 00111110 11110 01124
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+|+|+-.-. . ..+....++|+++|.+++.
T Consensus 207 gvdvv~d~~G-------~--~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 207 GYDCYFDNVG-------G--EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred CeEEEEECCC-------H--HHHHHHHHHhCcCcEEEEe
Confidence 6999875322 1 2457788899999999875
No 344
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=82.70 E-value=1.8 Score=40.05 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=51.6
Q ss_pred CCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
++.+|+=+|+| .|..+...+.....+|+++|.++.-++.+...+.. .+.....+..++...-..+|+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----------~v~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----------RIHTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----------eeEeccCCHHHHHHHHccCCEEE
Confidence 45679999987 44444544444333699999998877766554422 01111111111110013689998
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
..-.+.--. ...-+-+++.+.++||++|+-
T Consensus 236 ~a~~~~g~~--~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 236 GAVLIPGAK--APKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred EccccCCCC--CCcCcCHHHHhcCCCCCEEEE
Confidence 753211000 011123455566899987664
No 345
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.45 E-value=7.8 Score=33.42 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=56.6
Q ss_pred CCccEEEeecCc----c-HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------
Q 023562 157 QHLVALDCGSGI----G-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (280)
Q Consensus 157 ~~~~VLDlGcG~----G-~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------ 225 (280)
+++.+|-.|++. | .++..|++.+. +|..++.++...+..++..... ....++.+|+.+..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~ 79 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEEL--------DAPIFLPLDVREPGQLEAVF 79 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhh--------ccceEEecCcCCHHHHHHHH
Confidence 346789899764 3 23444555565 5888888765433333322211 11345677876642
Q ss_pred ----CCCCcEEEEEccchhhc----------CChhhHHHH-----------HHHHHHcCCCCcEEEEEe
Q 023562 226 ----PETGRYDVIWVQWCIGH----------LTDDDFVSF-----------FKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 ----~~~~~fDlV~~~~~l~~----------~~~~d~~~~-----------l~~~~r~LkpGG~lii~e 269 (280)
...++.|+++.+-.+.. .+.+++... .+.+...|+.+|.|++.-
T Consensus 80 ~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 80 ARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred HHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 01156899987743321 233344333 355666677788776643
No 346
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=82.43 E-value=14 Score=33.49 Aligned_cols=45 Identities=11% Similarity=-0.012 Sum_probs=33.6
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHH
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~ 199 (280)
..++.+||-.|||. |..+..+++....+|+++|.++.-++.+++.
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 45678999999865 5566666655444699999999999988764
No 347
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=82.34 E-value=21 Score=33.16 Aligned_cols=116 Identities=11% Similarity=0.030 Sum_probs=69.7
Q ss_pred chHHHHHHHHhccCCCccCCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeE
Q 023562 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (280)
Q Consensus 137 ~~~~~l~~~l~~~l~~~~~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~ 216 (280)
...++|.+.+..... ..+||-++=..|.++..++...+. ...| |--.-...++|+..+++. ...+++
T Consensus 30 aade~ll~~~~~~~~------~~~~~i~nd~fGal~~~l~~~~~~--~~~d-s~~~~~~~~~n~~~n~~~----~~~~~~ 96 (378)
T PRK15001 30 AADEYLLQQLDDTEI------RGPVLILNDAFGALSCALAEHKPY--SIGD-SYISELATRENLRLNGID----ESSVKF 96 (378)
T ss_pred cHHHHHHHHHhhccc------CCCEEEEcCchhHHHHHHHhCCCC--eeeh-HHHHHHHHHHHHHHcCCC----ccccee
Confidence 344666666654321 137999999999999999855442 2233 222233345566554331 112333
Q ss_pred EEccCCCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 217 FCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 217 ~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.... .++ ++.+|+|+....=. ...++..+..+.+.|.||+.++..++..
T Consensus 97 ~~~~-~~~---~~~~d~vl~~~PK~---~~~l~~~l~~l~~~l~~~~~ii~g~~~k 145 (378)
T PRK15001 97 LDST-ADY---PQQPGVVLIKVPKT---LALLEQQLRALRKVVTSDTRIIAGAKAR 145 (378)
T ss_pred eccc-ccc---cCCCCEEEEEeCCC---HHHHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 3221 122 25689987754321 1356789999999999999998877764
No 348
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=81.81 E-value=5.3 Score=35.84 Aligned_cols=93 Identities=10% Similarity=0.016 Sum_probs=56.7
Q ss_pred ccEEEeec--CccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-C-CCCCCcEEE
Q 023562 159 LVALDCGS--GIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYDV 233 (280)
Q Consensus 159 ~~VLDlGc--G~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fDl 233 (280)
.+||=.|+ |.|..+..+++.... +|++++.+++-.+.+++.+... .-++....++.+ + ...+..+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~--------~vi~~~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD--------AAINYKTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc--------EEEECCCCCHHHHHHHHCCCCceE
Confidence 68888885 677788878776554 6999999988888877644321 001111111110 0 011246999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+..-. . ..+..+.+.|+++|.++..
T Consensus 228 vid~~g-------~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 228 YFDNVG-------G--EISDTVISQMNENSHIILC 253 (345)
T ss_pred EEECCC-------c--HHHHHHHHHhccCCEEEEE
Confidence 975322 1 2346778899999999874
No 349
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=81.64 E-value=6.2 Score=35.78 Aligned_cols=100 Identities=19% Similarity=0.138 Sum_probs=64.9
Q ss_pred CCCCccEEEee--cCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--C-CCCC
Q 023562 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--T-PETG 229 (280)
Q Consensus 155 ~~~~~~VLDlG--cG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~-~~~~ 229 (280)
.+++.+||=.| .|.|.++..|++.....+.++--|++-.+.+++.-.+ .-+++...|+.+- . ....
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd---------~vi~y~~~~~~~~v~~~t~g~ 210 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGAD---------HVINYREEDFVEQVRELTGGK 210 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCC---------EEEcCCcccHHHHHHHHcCCC
Confidence 44578899888 4667888888887543577777777777777666543 2233333333221 1 1223
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccC
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~ 272 (280)
.+|+|+..-. . ..+.+..+.|+++|.++..-..+
T Consensus 211 gvDvv~D~vG-------~--~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 211 GVDVVLDTVG-------G--DTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CceEEEECCC-------H--HHHHHHHHHhccCCEEEEEecCC
Confidence 6999986543 2 56677888999999998876554
No 350
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=80.96 E-value=14 Score=33.77 Aligned_cols=99 Identities=16% Similarity=-0.056 Sum_probs=56.5
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-CC-CCCCc
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-PETGR 230 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~ 230 (280)
..++.+||=.|+|. |..+..+++. +...|+++|.++.-++.+++.-... -++....++.+ +. ...+.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~---------~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA---------TVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCce---------EeCCCchhHHHHHHHHhCCC
Confidence 44567888888753 3444555554 4436999999999999887642210 01111111100 00 11135
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+|+|+-.-. . . ..+..+.+.|+++|.+++.-.
T Consensus 260 ~d~vid~~G--~----~--~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 260 VDYAFEMAG--S----V--PALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCEEEECCC--C----h--HHHHHHHHHHhcCCEEEEEcc
Confidence 888875422 1 1 456677788999999987643
No 351
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=80.57 E-value=4 Score=35.85 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=29.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV 189 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S 189 (280)
..+++...|+|+-+|.++-.|.+++- .|++||..
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng 242 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNG 242 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce-EEEEeccc
Confidence 45778999999999999999998877 49999954
No 352
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=79.94 E-value=20 Score=32.06 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=57.1
Q ss_pred ccEEEeecCc-c-HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 159 LVALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 159 ~~VLDlGcG~-G-~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
.+|+=+|||. | .++..|.+.+. .|+.++-+++.++..++.- |+.....+....+ ...... +.+.+.||+|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~---Gl~i~~~g~~~~~-~~~~~~-~~~~~~~D~viv 76 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAG---GLTLVEQGQASLY-AIPAET-ADAAEPIHRLLL 76 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcC---CeEEeeCCcceee-ccCCCC-cccccccCEEEE
Confidence 4788999885 4 45555555454 5999999877676655421 1100000000111 111111 112257999876
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.-=-. +....++.+...+.++..+++.-|
T Consensus 77 ~vK~~-----~~~~al~~l~~~l~~~t~vv~lQN 105 (305)
T PRK05708 77 ACKAY-----DAEPAVASLAHRLAPGAELLLLQN 105 (305)
T ss_pred ECCHH-----hHHHHHHHHHhhCCCCCEEEEEeC
Confidence 52211 455788999999999998877655
No 353
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=79.88 E-value=14 Score=33.12 Aligned_cols=106 Identities=12% Similarity=0.110 Sum_probs=71.8
Q ss_pred CccEEEeecCccHHHHHHHHhcCC--cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--C-------C
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--T-------P 226 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~--~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~-------~ 226 (280)
-..|+-+|||-=.-+..+ .+.. .|.=+|. |+.++.=++.+++.+. ..+...+++..|+.+- + +
T Consensus 93 ~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~---~~~~~~~~Va~Dl~~~dw~~~L~~~G~ 166 (297)
T COG3315 93 IRQVVILGAGLDTRAYRL--DWPKGTRVFEVDL-PEVIEFKKKLLAERGA---TPPAHRRLVAVDLREDDWPQALAAAGF 166 (297)
T ss_pred ccEEEEeccccccceeec--CCCCCCeEEECCC-cHHHHHHHHHhhhcCC---CCCceEEEEeccccccchHHHHHhcCC
Confidence 357999999864333322 2232 4555563 6666666666665421 1123678888888732 2 1
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
....--++++-.++.|++++....+|+.+.....||-.+++..
T Consensus 167 d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 167 DRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred CcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 2334457778899999999999999999999999999888765
No 354
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.83 E-value=2.2 Score=35.59 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=51.1
Q ss_pred CCCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..+.+||-+|.- ||.+...++.+ .++|+.+|+.|.|-... +.+++|... +.+..+.+|+|
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~l--------------p~~v~Fr~~----~~~~~G~~Dli 103 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFL--------------PNNVKFRNL----LKFIRGEVDLI 103 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcC--------------CCCccHhhh----cCCCCCceeEE
Confidence 356789999975 77777777766 45799999999886533 234555544 33445899999
Q ss_pred EccchhhcCChh
Q 023562 235 WVQWCIGHLTDD 246 (280)
Q Consensus 235 ~~~~~l~~~~~~ 246 (280)
+--..+.-+.+.
T Consensus 104 vDlTGlGG~~Pe 115 (254)
T COG4017 104 VDLTGLGGIEPE 115 (254)
T ss_pred EeccccCCCCHH
Confidence 988777777654
No 355
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=79.62 E-value=21 Score=31.88 Aligned_cols=96 Identities=16% Similarity=0.085 Sum_probs=56.8
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccC----CCCCCCC
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~----~~~~~~~ 228 (280)
..++.+||-.|+| .|..+..+++... ..+.+++.++...+.+++.-.. .-++....++ ... ...
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~---------~vi~~~~~~~~~~i~~~-~~~ 234 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGAT---------DIINPKNGDIVEQILEL-TGG 234 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCc---------EEEcCCcchHHHHHHHH-cCC
Confidence 3456788887765 3666666776654 3688888888888777654211 0011111111 111 122
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+.+|+|+....- . ..+..+.+.|+++|.++..
T Consensus 235 ~~~d~vld~~g~------~--~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 235 RGVDCVIEAVGF------E--ETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCcEEEEccCC------H--HHHHHHHHHhhcCCEEEEE
Confidence 468988854221 1 4677788899999998864
No 356
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=79.50 E-value=12 Score=33.05 Aligned_cols=84 Identities=13% Similarity=-0.020 Sum_probs=51.1
Q ss_pred cEEEeecCc--cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 160 ~VLDlGcG~--G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
+|.=+|+|. |.++..|.+.+. +|.++|.++..++.+.+.-. +.....+.+. -...|+|+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~------------~~~~~~~~~~----~~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGL------------VDEASTDLSL----LKDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC------------cccccCCHhH----hcCCCEEEEc
Confidence 466678775 345555655555 59999999998887765311 1111111111 1356888876
Q ss_pred chhhcCChhhHHHHHHHHHHcCCCCcEE
Q 023562 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (280)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (280)
-. +.....+++++...++|+.++
T Consensus 65 vp-----~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 65 LP-----IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred CC-----HHHHHHHHHHHHHhCCCCcEE
Confidence 43 334557788888888877544
No 357
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=79.36 E-value=10 Score=34.08 Aligned_cols=97 Identities=10% Similarity=0.024 Sum_probs=59.9
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc-cCCC-C-CCCCC
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD-F-TPETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~ 229 (280)
..++.+||=.|+ |.|..+..+++....+|++++.++.-.+.+++.+... ..+++... ++.+ + ....+
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~--------~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFD--------DAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCc--------eeEEcCCcccHHHHHHHhCCC
Confidence 456788998886 5677777777664446999998998888887643321 01111110 1110 0 01114
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+|+|+-.-. . ..+..+.+.|+++|.++..
T Consensus 221 gvd~v~d~~g-------~--~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 221 GIDIYFDNVG-------G--KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CcEEEEECCC-------H--HHHHHHHHHhccCcEEEEe
Confidence 6898875322 2 4567788999999999875
No 358
>PRK05872 short chain dehydrogenase; Provisional
Probab=78.72 E-value=19 Score=31.70 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=44.9
Q ss_pred CCccEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--------
Q 023562 157 QHLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 225 (280)
++.++|-.|++.| .++..+++++. +|.+++.++..++...+.+.. ...+..+.+|+.+..
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~--------~~~~~~~~~Dv~d~~~v~~~~~~ 78 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG--------DDRVLTVVADVTDLAAMQAAAEE 78 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC--------CCcEEEEEecCCCHHHHHHHHHH
Confidence 3467888886655 23444455555 599999998877766554432 123445557776642
Q ss_pred --CCCCcEEEEEccch
Q 023562 226 --PETGRYDVIWVQWC 239 (280)
Q Consensus 226 --~~~~~fDlV~~~~~ 239 (280)
...+++|+++.+-.
T Consensus 79 ~~~~~g~id~vI~nAG 94 (296)
T PRK05872 79 AVERFGGIDVVVANAG 94 (296)
T ss_pred HHHHcCCCCEEEECCC
Confidence 01146899987743
No 359
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=78.23 E-value=12 Score=33.51 Aligned_cols=89 Identities=12% Similarity=0.011 Sum_probs=51.7
Q ss_pred ccEEEeecCcc--HHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 159 LVALDCGSGIG--RITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 159 ~~VLDlGcG~G--~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.+|.=+|+|.- .++..+.+.+. ..|+++|.++..++.+++.- . ... ...+..+. -...|+|+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g----~-------~~~-~~~~~~~~---~~~aDvVi 71 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELG----L-------GDR-VTTSAAEA---VKGADLVI 71 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCC----C-------Cce-ecCCHHHH---hcCCCEEE
Confidence 47888998862 34444554554 36999999998887775421 0 000 11121111 13568887
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
.+-.. .....+++.+...+++|..++.
T Consensus 72 iavp~-----~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 72 LCVPV-----GASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ECCCH-----HHHHHHHHHHHhhCCCCCEEEe
Confidence 66432 2334667777777888876544
No 360
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.97 E-value=18 Score=30.35 Aligned_cols=104 Identities=13% Similarity=-0.030 Sum_probs=57.6
Q ss_pred CccEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-C-------
Q 023562 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-P------- 226 (280)
Q Consensus 158 ~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~------- 226 (280)
+.+||-.|++.|. ++..+++++. +|.+++-++.-++...+.... ..++.++.+|+.+.. .
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSK--------YGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHh--------cCCeEEEECCCCCHHHHHHHHHHH
Confidence 4578888886432 2333344455 599999988776655444332 124677788887532 0
Q ss_pred --CCCcEEEEEccchhhc-CChhh--------------HHHHHHHHHHcCCCCcEEEEEec
Q 023562 227 --ETGRYDVIWVQWCIGH-LTDDD--------------FVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 227 --~~~~fDlV~~~~~l~~-~~~~d--------------~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.-+.+|.++.+..... .+..+ ...+++.+...++++|.+++.-.
T Consensus 76 ~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 76 AKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred HHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 0134677775532111 00011 11335666667778887777643
No 361
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=77.94 E-value=4.5 Score=37.43 Aligned_cols=115 Identities=14% Similarity=0.030 Sum_probs=69.5
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcC----CCCCCCCCcceeEEEccCCCCC---C
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE----NHMAPDMHKATNFFCVPLQDFT---P 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~----~~~~~~~~~~i~~~~~d~~~~~---~ 226 (280)
.++.....|+|.|.|.+...++..... .-.|+++....-++|..+.... .+.+. ....++.+.+++.+-. .
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk-~~~~~~~i~gsf~~~~~v~e 268 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK-KPNKIETIHGSFLDPKRVTE 268 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC-CcCceeecccccCCHHHHHH
Confidence 566778899999999999877655332 4555555444433333221110 00000 0234566666655432 1
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCC
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~ 273 (280)
-....++|+++.+. ++ +++..=+.++..-+++|-.|+-++.+..
T Consensus 269 I~~eatvi~vNN~~--Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 269 IQTEATVIFVNNVA--FD-PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HhhcceEEEEeccc--CC-HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 12468999998773 23 4555556689999999999988777654
No 362
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=77.60 E-value=4.8 Score=31.22 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=45.2
Q ss_pred CccEEEeecCccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC-CCcEEEEE
Q 023562 158 HLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (280)
Q Consensus 158 ~~~VLDlGcG~G~-~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fDlV~ 235 (280)
..+|+|+|-|.=. .+..|.+++++ |+++|+.+. .+ ...++++..|+.+-.++ =...|+|+
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G~d-V~~tDi~~~---~a--------------~~g~~~v~DDif~P~l~iY~~a~lIY 75 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERGFD-VIATDINPR---KA--------------PEGVNFVVDDIFNPNLEIYEGADLIY 75 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS-E-EEEE-SS-S---------------------STTEE---SSS--HHHHTTEEEEE
T ss_pred CCcEEEECcCCCHHHHHHHHHcCCc-EEEEECccc---cc--------------ccCcceeeecccCCCHHHhcCCcEEE
Confidence 3599999999874 45556666764 999999887 11 12477888888763311 13689999
Q ss_pred ccchhhcCChhhHHHHHHHHHHcC
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGL 259 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~L 259 (280)
+... +.+++..+-++++.+
T Consensus 76 SiRP-----P~El~~~il~lA~~v 94 (127)
T PF03686_consen 76 SIRP-----PPELQPPILELAKKV 94 (127)
T ss_dssp EES-------TTSHHHHHHHHHHH
T ss_pred EeCC-----ChHHhHHHHHHHHHh
Confidence 8765 457777777777754
No 363
>PRK08265 short chain dehydrogenase; Provisional
Probab=77.53 E-value=23 Score=30.41 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=42.4
Q ss_pred CccEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--------
Q 023562 158 HLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (280)
Q Consensus 158 ~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------- 226 (280)
+.++|-.|++.| .++..|++++. +|.+++.++.-++...+.. ..++.++.+|+.+...
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL----------GERARFIATDITDDAAIERAVATV 74 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh----------CCeeEEEEecCCCHHHHHHHHHHH
Confidence 457888886544 23444455566 5999998876555444332 1246778888876420
Q ss_pred --CCCcEEEEEccc
Q 023562 227 --ETGRYDVIWVQW 238 (280)
Q Consensus 227 --~~~~fDlV~~~~ 238 (280)
..++.|+++.+-
T Consensus 75 ~~~~g~id~lv~~a 88 (261)
T PRK08265 75 VARFGRVDILVNLA 88 (261)
T ss_pred HHHhCCCCEEEECC
Confidence 013678888663
No 364
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=77.44 E-value=3.9 Score=36.49 Aligned_cols=74 Identities=11% Similarity=0.147 Sum_probs=61.0
Q ss_pred EeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCc
Q 023562 186 LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 263 (280)
Q Consensus 186 vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG 263 (280)
....+...+.+++++. ++.++.+|+.++.- +.+.+|.++...+-.++++..+..++.++.+-+.+|.
T Consensus 292 ~yl~~~~YEsir~n~~-----------RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA 360 (414)
T COG5379 292 AYLDEGVYESIRQNLR-----------RVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGA 360 (414)
T ss_pred hhhchhhHHHHHhhhh-----------heeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCc
Confidence 4556667777777764 38889999887642 4589999999999999999999999999999999999
Q ss_pred EEEEEec
Q 023562 264 FFVLKEN 270 (280)
Q Consensus 264 ~lii~e~ 270 (280)
.++|-..
T Consensus 361 ~VifRta 367 (414)
T COG5379 361 RVIFRTA 367 (414)
T ss_pred EEEEecc
Confidence 9999643
No 365
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=77.07 E-value=31 Score=30.42 Aligned_cols=96 Identities=10% Similarity=0.026 Sum_probs=58.7
Q ss_pred CCCCccEEEee--cCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCC-C-CCCCCc
Q 023562 155 NNQHLVALDCG--SGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGR 230 (280)
Q Consensus 155 ~~~~~~VLDlG--cG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~ 230 (280)
..++.+||=.| .|.|..+..+++....+|.+++.+++-.+.+++. ... .-++....++.+ + ......
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~-Ga~--------~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKEL-GFD--------AVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCC--------EEEeCCCccHHHHHHHHCCCC
Confidence 44567888887 4667777777776555799999999888888763 211 001111111100 0 011246
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+|+|+-.-. . ..+....+.|+++|.++..
T Consensus 212 vd~vld~~g-------~--~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYFDNVG-------G--EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEEECCC-------H--HHHHHHHHhhccCCEEEEE
Confidence 898875322 1 3567888999999999865
No 366
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=77.07 E-value=27 Score=31.14 Aligned_cols=97 Identities=20% Similarity=0.044 Sum_probs=59.1
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc----CCCCCCCCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP----LQDFTPETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d----~~~~~~~~~ 229 (280)
..++.+||-.|+|. |..+..+++....+|+++..+++..+.+++.... .-+.....+ +... ....
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~---------~v~~~~~~~~~~~l~~~-~~~~ 226 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGAD---------DTINVGDEDVAARLREL-TDGE 226 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCC---------EEecCcccCHHHHHHHH-hCCC
Confidence 44667899998764 6677777766545688998888888887654211 001111111 1111 1224
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.+|+++.+..- ...+..+.+.|+++|.++...
T Consensus 227 ~vd~vld~~g~--------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 227 GADVVIDATGN--------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEc
Confidence 58999865320 145677888999999988653
No 367
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=77.03 E-value=7 Score=34.19 Aligned_cols=98 Identities=15% Similarity=0.025 Sum_probs=56.4
Q ss_pred CCCccEEEeecCc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEE--ccCCCCCCCCCcE
Q 023562 156 NQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--VPLQDFTPETGRY 231 (280)
Q Consensus 156 ~~~~~VLDlGcG~-G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~--~d~~~~~~~~~~f 231 (280)
.++.+||=+|+|. |..+..+++. +...|+++|.++.-++.+++.-... -++... ..+.... ....+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~---------~i~~~~~~~~~~~~~-~~~g~ 188 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA---------LAEPEVLAERQGGLQ-NGRGV 188 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE---------ecCchhhHHHHHHHh-CCCCC
Confidence 3567888888742 3344445544 3335899999999888887743211 011000 0011111 12358
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
|+|+-.-. . ...++.+.+.|+|+|.+++.-..
T Consensus 189 d~vid~~G-----~---~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 189 DVALEFSG-----A---TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CEEEECCC-----C---hHHHHHHHHHhcCCCEEEEeccC
Confidence 88875422 0 14677788999999999886543
No 368
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=75.99 E-value=27 Score=31.22 Aligned_cols=97 Identities=20% Similarity=0.051 Sum_probs=55.2
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhcCCc-EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc---CCCCCCCCC
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP---LQDFTPETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~~~~-v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d---~~~~~~~~~ 229 (280)
..++.+||=.|+| .|..+..+++....+ |++++.++.-++.+++.-... -++....+ +.+. ....
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~---------~i~~~~~~~~~~~~~-~~~~ 230 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADF---------VINSGQDDVQEIREL-TSGA 230 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE---------EEcCCcchHHHHHHH-hCCC
Confidence 3457788888764 233444455544445 999999999888886542210 01111111 1111 1123
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.+|+|+-.-.- . ..+....+.|+++|.+++.-
T Consensus 231 ~~d~vid~~g~------~--~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 231 GADVAIECSGN------T--AARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCEEEECCCC------H--HHHHHHHHHhhcCCEEEEEc
Confidence 68998754220 1 35566778899999998753
No 369
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=75.43 E-value=5.5 Score=31.41 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=24.2
Q ss_pred EeecCcc--HHHHHHHH--hcCC-cEEEEeCCHHHHHHHHHH
Q 023562 163 DCGSGIG--RITKNLLI--RYFN-EVDLLEPVSHFLDAARES 199 (280)
Q Consensus 163 DlGcG~G--~~s~~l~~--~~~~-~v~~vD~S~~~l~~A~~~ 199 (280)
|+|++.| .....++. .+.. .|+++|+++...+..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 66555542 2333 799999999999998888
No 370
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=75.38 E-value=30 Score=30.97 Aligned_cols=96 Identities=20% Similarity=0.158 Sum_probs=57.5
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCc-EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc-------CCCCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-------LQDFT 225 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~-v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d-------~~~~~ 225 (280)
..++.+||-.|+|. |..+..+++..... |.+++.++...+.+++. ..... +.....+ +.+.
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~~v--------i~~~~~~~~~~~~~~~~~- 229 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GATHT--------VNVRTEDTPESAEKIAEL- 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCcEE--------eccccccchhHHHHHHHH-
Confidence 45667888877654 56666667664445 89998888888877653 21100 1111111 1111
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.....+|+|+-+..- . ..+....+.|+++|.++..
T Consensus 230 ~~~~~~d~vld~~g~------~--~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 230 LGGKGPDVVIECTGA------E--SCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred hCCCCCCEEEECCCC------H--HHHHHHHHHhhcCCEEEEE
Confidence 122458999865321 1 3677788999999998865
No 371
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=75.30 E-value=13 Score=32.92 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=70.7
Q ss_pred CCccEEEeecCccHHHHHHH-HhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCC--CCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~-~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fDl 233 (280)
.+..|+-+| ---..+.+++ ...+.+|..+|+.+..|+..++.+...|+ .++..+.-|+..--++ .++||+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~------~~ie~~~~Dlr~plpe~~~~kFDv 224 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY------NNIEAFVFDLRNPLPEDLKRKFDV 224 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc------cchhheeehhcccChHHHHhhCCe
Confidence 456799999 4444444443 33556999999999999999888877654 4577788888763222 268999
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCC---cEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPG---GFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpG---G~lii~ 268 (280)
.+.--. .-+ +.+..|+.+=...||.- |++.++
T Consensus 225 fiTDPp-eTi--~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 225 FITDPP-ETI--KALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred eecCch-hhH--HHHHHHHhccHHHhcCCCccceEeee
Confidence 876422 111 25677888888888876 788776
No 372
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=75.12 E-value=16 Score=32.55 Aligned_cols=86 Identities=21% Similarity=0.141 Sum_probs=52.8
Q ss_pred CCccEEEeecC-ccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG-~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
++.+||=+||| .|.++..+++. +...|.++|.++..++.|.+... + +..+. ....+|+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~------------i-----~~~~~--~~~g~Dvv 204 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV------------L-----DPEKD--PRRDYRAI 204 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc------------c-----Chhhc--cCCCCCEE
Confidence 45678888865 35555656654 44457788988887776654210 0 10000 12468988
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+-+-. . ...+..+.+.|+++|.+++.-
T Consensus 205 id~~G--~------~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 205 YDASG--D------PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EECCC--C------HHHHHHHHHhhhcCcEEEEEe
Confidence 75432 1 146677888999999999763
No 373
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=74.81 E-value=30 Score=29.40 Aligned_cols=73 Identities=16% Similarity=0.041 Sum_probs=44.1
Q ss_pred CccEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---------
Q 023562 158 HLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--------- 225 (280)
Q Consensus 158 ~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------- 225 (280)
+.++|=.|++.| .++..|++++. +|.+++.++..++...+.+... ...+.++..|+.+..
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQE-------GIKAHAAPFNVTHKQEVEAAIEHI 80 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhc-------CCeEEEEecCCCCHHHHHHHHHHH
Confidence 456888886554 23444455555 5999998877766555444321 234566778877642
Q ss_pred -CCCCcEEEEEccc
Q 023562 226 -PETGRYDVIWVQW 238 (280)
Q Consensus 226 -~~~~~fDlV~~~~ 238 (280)
...+++|+++.+-
T Consensus 81 ~~~~~~id~vi~~a 94 (254)
T PRK08085 81 EKDIGPIDVLINNA 94 (254)
T ss_pred HHhcCCCCEEEECC
Confidence 0114689998764
No 374
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=74.50 E-value=7 Score=34.09 Aligned_cols=74 Identities=16% Similarity=0.064 Sum_probs=45.0
Q ss_pred HHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEccchhhcCChhhHHH
Q 023562 172 TKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVS 250 (280)
Q Consensus 172 s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~~~l~~~~~~d~~~ 250 (280)
+..|.+.++. +|.++|.++..++.|.+.-.. .-...+.+.+ ..+|+|+.+--+. ....
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~------------~~~~~~~~~~----~~~DlvvlavP~~-----~~~~ 60 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELGII------------DEASTDIEAV----EDADLVVLAVPVS-----AIED 60 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSS------------SEEESHHHHG----GCCSEEEE-S-HH-----HHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCe------------eeccCCHhHh----cCCCEEEEcCCHH-----HHHH
Confidence 5567667744 899999999999998654211 1111111111 3469998765543 4567
Q ss_pred HHHHHHHcCCCCcEEE
Q 023562 251 FFKRAKVGLKPGGFFV 266 (280)
Q Consensus 251 ~l~~~~r~LkpGG~li 266 (280)
+++++...+++|+++.
T Consensus 61 ~l~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 61 VLEEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHCGS-TTSEEE
T ss_pred HHHHhhhhcCCCcEEE
Confidence 8888888888887653
No 375
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=73.74 E-value=22 Score=30.72 Aligned_cols=72 Identities=17% Similarity=0.089 Sum_probs=43.9
Q ss_pred CccEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-----C--
Q 023562 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----E-- 227 (280)
Q Consensus 158 ~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~-- 227 (280)
+.++|-.|++.|. ++..|++++. +|.+++.++..++...+.+... +.++.++.+|+.+... .
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAA-------GGEALAVKADVLDKESLEQARQQI 81 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEECCCCCHHHHHHHHHHH
Confidence 4567777775542 3444455565 5999998877666554444321 2356778888876420 0
Q ss_pred ---CCcEEEEEcc
Q 023562 228 ---TGRYDVIWVQ 237 (280)
Q Consensus 228 ---~~~fDlV~~~ 237 (280)
-+++|+++.+
T Consensus 82 ~~~~g~id~li~~ 94 (278)
T PRK08277 82 LEDFGPCDILING 94 (278)
T ss_pred HHHcCCCCEEEEC
Confidence 1468988866
No 376
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=73.19 E-value=20 Score=33.74 Aligned_cols=88 Identities=17% Similarity=-0.000 Sum_probs=52.1
Q ss_pred CCccEEEeecCccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCC
Q 023562 157 QHLVALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~---~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~ 229 (280)
...+|+=+|+ |.++..+++. ....|+.+|.+++.++..++... .+.++.+|..+.. ..-.
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~-----------~~~~i~gd~~~~~~L~~~~~~ 296 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELP-----------NTLVLHGDGTDQELLEEEGID 296 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC-----------CCeEEECCCCCHHHHHhcCCc
Confidence 3467888887 5555555443 22369999999999988776532 2456777776532 1224
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCC
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG 262 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpG 262 (280)
.+|.|++... +++..-.+..+.+.+.+.
T Consensus 297 ~a~~vi~~~~-----~~~~n~~~~~~~~~~~~~ 324 (453)
T PRK09496 297 EADAFIALTN-----DDEANILSSLLAKRLGAK 324 (453)
T ss_pred cCCEEEECCC-----CcHHHHHHHHHHHHhCCC
Confidence 6788776432 122223444445556554
No 377
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.17 E-value=35 Score=29.57 Aligned_cols=73 Identities=10% Similarity=-0.054 Sum_probs=41.3
Q ss_pred CccEEEeecCc----cH-HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 158 HLVALDCGSGI----GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 158 ~~~VLDlGcG~----G~-~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
+..+|=.|++. |. ++..|++.+. +|..++.+....+.+++.... .....++.+|+.+..
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~--------~~~~~~~~~Dl~~~~~v~~~~~ 76 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQ--------LGSDIVLPCDVAEDASIDAMFA 76 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhc--------cCCceEeecCCCCHHHHHHHHH
Confidence 45788888854 32 4566666666 488888764333333333222 112456777886632
Q ss_pred ---CCCCcEEEEEccch
Q 023562 226 ---PETGRYDVIWVQWC 239 (280)
Q Consensus 226 ---~~~~~fDlV~~~~~ 239 (280)
..-+++|+++.+-.
T Consensus 77 ~~~~~~g~iD~linnAg 93 (262)
T PRK07984 77 ELGKVWPKFDGFVHSIG 93 (262)
T ss_pred HHHhhcCCCCEEEECCc
Confidence 11246899987743
No 378
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=72.86 E-value=14 Score=36.51 Aligned_cols=89 Identities=9% Similarity=0.047 Sum_probs=55.4
Q ss_pred ccEEEeecCccHHHHHHHH----hcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCc
Q 023562 159 LVALDCGSGIGRITKNLLI----RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~----~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~ 230 (280)
.+|+=+|+ |.++..+++ ++. .++.+|.+++.++.+++. ....+.+|..+.. ..-++
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-------------g~~v~~GDat~~~~L~~agi~~ 464 (601)
T PRK03659 401 PQVIIVGF--GRFGQVIGRLLMANKM-RITVLERDISAVNLMRKY-------------GYKVYYGDATQLELLRAAGAEK 464 (601)
T ss_pred CCEEEecC--chHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhC-------------CCeEEEeeCCCHHHHHhcCCcc
Confidence 35655555 555554443 344 699999999999988752 1456788887753 12246
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.|++++... +++....+-...|.+.|...++..
T Consensus 465 A~~vv~~~~-----d~~~n~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 465 AEAIVITCN-----EPEDTMKIVELCQQHFPHLHILAR 497 (601)
T ss_pred CCEEEEEeC-----CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 787776533 223333444556667888888764
No 379
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=71.81 E-value=11 Score=33.51 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=49.9
Q ss_pred cEEEeecCcc--HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 160 VALDCGSGIG--RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 160 ~VLDlGcG~G--~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
+|-=||+|.- .++..+++.++ +|.+.|.++..++.+++.... ...+..++.......|+|+++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g~~--------------~~~s~~~~~~~~~~~dvIi~~ 66 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDRTT--------------GVANLRELSQRLSAPRVVWVM 66 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCc--------------ccCCHHHHHhhcCCCCEEEEE
Confidence 4566787752 34555555555 599999999887776653110 001111111001235888765
Q ss_pred chhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 023562 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (280)
- ++.....+++.+...|++|-+++
T Consensus 67 v-----p~~~~~~v~~~l~~~l~~g~ivi 90 (298)
T TIGR00872 67 V-----PHGIVDAVLEELAPTLEKGDIVI 90 (298)
T ss_pred c-----CchHHHHHHHHHHhhCCCCCEEE
Confidence 2 33355678888888888876543
No 380
>PLN02740 Alcohol dehydrogenase-like
Probab=71.73 E-value=37 Score=31.17 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=54.6
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc--cCCC-C-CCCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQD-F-TPET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~ 228 (280)
..++.+||=+|||. |..+..+++.. ...|+++|.++.-++.+++.-.. .-++.... ++.+ + ....
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~---------~~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGIT---------DFINPKDSDKPVHERIREMTG 266 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCc---------EEEecccccchHHHHHHHHhC
Confidence 45677899998752 23344444443 33699999999999988763211 01111100 0100 0 0111
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCC-cEEEEEe
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (280)
+.+|+|+-.-. . . ..+....+.+++| |.+++.-
T Consensus 267 ~g~dvvid~~G-----~-~--~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 267 GGVDYSFECAG-----N-V--EVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCCEEEECCC-----C-h--HHHHHHHHhhhcCCCEEEEEc
Confidence 25898875433 1 1 4566677788887 9887753
No 381
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.71 E-value=15 Score=33.38 Aligned_cols=99 Identities=15% Similarity=0.100 Sum_probs=54.2
Q ss_pred ccEEEeecCcc--HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCc-------CCCCCCCCCcceeEEEccCCCCCCCCC
Q 023562 159 LVALDCGSGIG--RITKNLLIRYFNEVDLLEPVSHFLDAARESLAP-------ENHMAPDMHKATNFFCVPLQDFTPETG 229 (280)
Q Consensus 159 ~~VLDlGcG~G--~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~-------~~~~~~~~~~~i~~~~~d~~~~~~~~~ 229 (280)
.+|.=||+|+= .++..++..++ .|+..|++++.++.+++.+.. .++.......++++. .++++. -.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~a---v~ 82 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEAC---VA 82 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHH---hc
Confidence 57889999842 44455666666 499999999988876664331 111000000111211 111110 13
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (280)
..|+|+-+-. +.+ +-.+.+++++.+.++|+-+|
T Consensus 83 ~aDlViEavp-E~l--~vK~~lf~~l~~~~~~~aIl 115 (321)
T PRK07066 83 DADFIQESAP-ERE--ALKLELHERISRAAKPDAII 115 (321)
T ss_pred CCCEEEECCc-CCH--HHHHHHHHHHHHhCCCCeEE
Confidence 4566665421 111 12357899999999998743
No 382
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=71.51 E-value=46 Score=29.86 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=56.3
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhc-CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccC----CCCCCCC
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~-~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~----~~~~~~~ 228 (280)
..++.+||-.|+| .|..+..+++.. ...+.+++.++...+.+++.-.. .-++....++ ..+ ...
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~---------~~v~~~~~~~~~~i~~~-~~~ 233 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGAT---------DIVDYKNGDVVEQILKL-TGG 233 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCc---------eEecCCCCCHHHHHHHH-hCC
Confidence 4456788888765 345555555553 33699999998888887753211 0011111111 011 112
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
..+|+|+.+-. . . ..+..+.+.|+++|.++..-
T Consensus 234 ~~~d~vld~~g-----~-~--~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 234 KGVDAVIIAGG-----G-Q--DTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCCcEEEECCC-----C-H--HHHHHHHHHhhcCCEEEEec
Confidence 46898875322 0 1 46778889999999988653
No 383
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=71.17 E-value=48 Score=30.78 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=57.3
Q ss_pred CCCCccEEEee--cCccHHHHHHHHhc---CCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc----cC----
Q 023562 155 NNQHLVALDCG--SGIGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV----PL---- 221 (280)
Q Consensus 155 ~~~~~~VLDlG--cG~G~~s~~l~~~~---~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~----d~---- 221 (280)
..++.+||=+| .+.|..+..+++.. ..+|+++|.++.-++.+++....... ..+....++.. ++
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~---~~Ga~~~~i~~~~~~~~~~~v 249 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA---SRGIELLYVNPATIDDLHATL 249 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc---ccCceEEEECCCccccHHHHH
Confidence 44567888887 34677777777663 23699999999999999886321100 00000011110 11
Q ss_pred CCCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 222 QDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 222 ~~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
.++ .....+|+|+..-. . ...+....+.++++|.+++
T Consensus 250 ~~~-t~g~g~D~vid~~g--~------~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 250 MEL-TGGQGFDDVFVFVP--V------PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred HHH-hCCCCCCEEEEcCC--C------HHHHHHHHHHhccCCeEEE
Confidence 011 11235888875321 0 1467778889998886654
No 384
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=70.01 E-value=46 Score=30.35 Aligned_cols=99 Identities=14% Similarity=0.016 Sum_probs=56.1
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEE--ccCCC-C-CCCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--VPLQD-F-TPET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~--~d~~~-~-~~~~ 228 (280)
..++.+||=.|||. |..+..+++.... +|+++|.++.-++.+++.-.. .-++... .++.+ + ....
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~---------~~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT---------DCVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC---------eEEcccccchhHHHHHHHHhC
Confidence 45677899888753 4455555655433 699999999999988764221 0011110 00000 0 0011
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCC-cEEEEEec
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 270 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e~ 270 (280)
+.+|+|+-.-. . ...+..+.+.+++| |.+++.-.
T Consensus 254 ~g~d~vid~~G--~------~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 254 GGVDYSFECIG--N------VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCCEEEECCC--C------HHHHHHHHHHhhcCCCeEEEEec
Confidence 25788875422 0 14566777888886 98877543
No 385
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.92 E-value=48 Score=28.32 Aligned_cols=102 Identities=13% Similarity=0.063 Sum_probs=56.1
Q ss_pred CccEEEeecC----cc-HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 158 HLVALDCGSG----IG-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 158 ~~~VLDlGcG----~G-~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
++.+|-.|++ .| .++..|++++. +|..++.+....+.+++.. ...+.++.+|+.+..
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~----------~~~~~~~~~Dl~~~~~v~~~~~ 75 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLV----------DEEDLLVECDVASDESIERAFA 75 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhc----------cCceeEEeCCCCCHHHHHHHHH
Confidence 4578888875 33 23445555565 5888877644333333221 123667888887642
Q ss_pred ---CCCCcEEEEEccchhh----------cCChhhHH-----------HHHHHHHHcCCCCcEEEEEec
Q 023562 226 ---PETGRYDVIWVQWCIG----------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 226 ---~~~~~fDlV~~~~~l~----------~~~~~d~~-----------~~l~~~~r~LkpGG~lii~e~ 270 (280)
..-+++|+++.+-.+. ..+.+++. .+.+.+...|+.+|.+++.-.
T Consensus 76 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss 144 (252)
T PRK06079 76 TIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTY 144 (252)
T ss_pred HHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEec
Confidence 0115689988764332 12223322 234555666777887766533
No 386
>PRK07806 short chain dehydrogenase; Provisional
Probab=69.91 E-value=25 Score=29.69 Aligned_cols=103 Identities=17% Similarity=0.040 Sum_probs=53.1
Q ss_pred CccEEEeecCcc--H-HHHHHHHhcCCcEEEEeCCH-HHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-----C-
Q 023562 158 HLVALDCGSGIG--R-ITKNLLIRYFNEVDLLEPVS-HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----E- 227 (280)
Q Consensus 158 ~~~VLDlGcG~G--~-~s~~l~~~~~~~v~~vD~S~-~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~- 227 (280)
+.++|-.|+..| . +...|++++. +|.++..+. ..++.....+... ..++.++.+|+.+... .
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAA-------GGRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhc-------CCceEEEEcCCCCHHHHHHHHHH
Confidence 457888886433 2 3333444555 588877653 2333333222211 2346777888876420 0
Q ss_pred ----CCcEEEEEccchhhcCCh-----------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 228 ----TGRYDVIWVQWCIGHLTD-----------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 228 ----~~~fDlV~~~~~l~~~~~-----------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
-+..|+++.+-......+ .-...+++.+...++.+|.+++.
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 78 AREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 035788775532211100 01345677777777767766654
No 387
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=69.88 E-value=15 Score=32.49 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=54.3
Q ss_pred ccEEEeecCcc--HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcC----------CCCCCCC----CcceeEEEccCC
Q 023562 159 LVALDCGSGIG--RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE----------NHMAPDM----HKATNFFCVPLQ 222 (280)
Q Consensus 159 ~~VLDlGcG~G--~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~----------~~~~~~~----~~~i~~~~~d~~ 222 (280)
.+|.=+|+|.= .++..++..++ .|+++|.++..++.+++.+... +...... ..++.+ ..+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCHH
Confidence 36888899852 34444555565 5999999999998776643321 0000000 001111 11221
Q ss_pred CCCCCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 023562 223 DFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 223 ~~~~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (280)
. -...|+|+.+-.- . .+....+++++.+.++|+.+|+
T Consensus 82 ~----~~~aDlVieav~e-~--~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S----LSDADFIVEAVPE-K--LDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H----hCCCCEEEEcCcC-c--HHHHHHHHHHHHhhCCCCeEEE
Confidence 1 1346877765321 1 0125678999999998887654
No 388
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=69.47 E-value=11 Score=35.38 Aligned_cols=112 Identities=15% Similarity=0.172 Sum_probs=73.5
Q ss_pred CCCccEEEeec-Ccc------HHHHHHHHhcCC-cEEEEe-CCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-
Q 023562 156 NQHLVALDCGS-GIG------RITKNLLIRYFN-EVDLLE-PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT- 225 (280)
Q Consensus 156 ~~~~~VLDlGc-G~G------~~s~~l~~~~~~-~v~~vD-~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~- 225 (280)
.++..|+=+|= |.| -++.++.+++.. -+++.| .-|.++++.+..... .++.|+..+-..-|
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q---------~~v~~f~~~~~~~Pv 168 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ---------VGVPFFGSGTEKDPV 168 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHH---------cCCceecCCCCCCHH
Confidence 45667888873 444 345555554444 577777 567888888887765 34555554322222
Q ss_pred ---------CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCCCC
Q 023562 226 ---------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGS 276 (280)
Q Consensus 226 ---------~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~~~ 276 (280)
.....||+|++-.+=.|--++++-.=++++++.++|.=.+++.|-...+..
T Consensus 169 ~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA 228 (451)
T COG0541 169 EIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDA 228 (451)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHH
Confidence 112468999987443333356788889999999999999999988765543
No 389
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=69.39 E-value=16 Score=32.63 Aligned_cols=97 Identities=19% Similarity=0.101 Sum_probs=57.0
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCc-EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEE---ccCCCCCCCCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC---VPLQDFTPETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~-v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~---~d~~~~~~~~~ 229 (280)
..++.+||-.|+|. |..+..+++..... +++++.++...+.+++.- .. .-+.... ..+... ....
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g-~~--------~~~~~~~~~~~~~~~~-~~~~ 226 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELG-AD--------DTINPKEEDVEKVREL-TEGR 226 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CC--------EEecCccccHHHHHHH-hCCC
Confidence 34567888888755 66666666654444 999998888888775431 11 0011110 011111 1123
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
.+|+|+.+.. . ...+..+.+.|+++|.++...
T Consensus 227 ~~d~vld~~g-----~---~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 227 GADLVIEAAG-----S---PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCEEEECCC-----C---HHHHHHHHHHhhcCCEEEEEc
Confidence 5899986421 1 146677889999999988764
No 390
>PRK07985 oxidoreductase; Provisional
Probab=69.19 E-value=37 Score=29.94 Aligned_cols=104 Identities=15% Similarity=0.084 Sum_probs=56.3
Q ss_pred CccEEEeecCcc---HHHHHHHHhcCCcEEEEeCC--HHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 158 HLVALDCGSGIG---RITKNLLIRYFNEVDLLEPV--SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 158 ~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S--~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
+.++|-.|++.| .++..|++++. +|..++.+ ...++...+..... +.++.++.+|+.+..
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~ 120 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEEC-------GRKAVLLPGDLSDEKFARSLVH 120 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHc-------CCeEEEEEccCCCHHHHHHHHH
Confidence 457898887544 24455555665 47777643 23333333333221 234667888887642
Q ss_pred ---CCCCcEEEEEccch-------hhcCChhhHH-----------HHHHHHHHcCCCCcEEEEEe
Q 023562 226 ---PETGRYDVIWVQWC-------IGHLTDDDFV-----------SFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 ---~~~~~fDlV~~~~~-------l~~~~~~d~~-----------~~l~~~~r~LkpGG~lii~e 269 (280)
..-+..|+++.+-. +...+.+++. .+++.+...++.+|.|++.-
T Consensus 121 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 121 EAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred HHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 01145788876532 2223333332 34556666677788777753
No 391
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=68.73 E-value=31 Score=30.40 Aligned_cols=99 Identities=17% Similarity=0.062 Sum_probs=51.9
Q ss_pred cEEEeecCccHH--HHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc-CCCCCCCCCcEEEEEc
Q 023562 160 VALDCGSGIGRI--TKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRYDVIWV 236 (280)
Q Consensus 160 ~VLDlGcG~G~~--s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~fDlV~~ 236 (280)
+|+=+|+|.-.. +..|.+.+. .|+.++. +..++..++.- +..........+ ... ..+.......+|+|+.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~g----~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRERG----LVIRSDHGDAVV-PGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhCC----eEEEeCCCeEEe-cceeecCHHHccCCCCEEEE
Confidence 577788886543 344444454 5999998 66666554321 100000000000 000 1111111256898876
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.--- ..+..+++.+...+.++..+++.-|
T Consensus 75 avk~-----~~~~~~~~~l~~~~~~~~~ii~~~n 103 (305)
T PRK12921 75 AVKA-----YQLDAAIPDLKPLVGEDTVIIPLQN 103 (305)
T ss_pred Eecc-----cCHHHHHHHHHhhcCCCCEEEEeeC
Confidence 5331 2456788888888888877766544
No 392
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=68.44 E-value=45 Score=29.28 Aligned_cols=98 Identities=15% Similarity=0.069 Sum_probs=53.7
Q ss_pred cEEEeecCccH--HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 160 VALDCGSGIGR--ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 160 ~VLDlGcG~G~--~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
+|+=+|+|.-. ++..|.+.+. +|+.++.++..++..++.-.. + . .........-..+... ...+|+|+..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~--~---~-~~~~~~~~~~~~~~~~-~~~~d~vila 73 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLR--L---E-DGEITVPVLAADDPAE-LGPQDLVILA 73 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCc--c---c-CCceeecccCCCChhH-cCCCCEEEEe
Confidence 57788887532 3344444444 599999877777665543110 0 0 0001000000111111 1578988876
Q ss_pred chhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
--- .+...+++.+...+.++..+++.-|
T Consensus 74 ~k~-----~~~~~~~~~l~~~l~~~~~iv~~~n 101 (304)
T PRK06522 74 VKA-----YQLPAALPSLAPLLGPDTPVLFLQN 101 (304)
T ss_pred ccc-----ccHHHHHHHHhhhcCCCCEEEEecC
Confidence 331 2456788889888888877776544
No 393
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.11 E-value=27 Score=31.20 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=58.0
Q ss_pred CCccEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--------
Q 023562 157 QHLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 225 (280)
.+..||==|.|.| .++..+++++. .+...|+++...+.-.+.+... + .+..+.+|+.+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~-------g-~~~~y~cdis~~eei~~~a~~ 107 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKI-------G-EAKAYTCDISDREEIYRLAKK 107 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhc-------C-ceeEEEecCCCHHHHHHHHHH
Confidence 4668888888888 35666677776 5999999999888777766543 1 4777888887642
Q ss_pred --CCCCcEEEEEccch------hhcCChhhHHH
Q 023562 226 --PETGRYDVIWVQWC------IGHLTDDDFVS 250 (280)
Q Consensus 226 --~~~~~fDlV~~~~~------l~~~~~~d~~~ 250 (280)
-+-+..|+++.+-. +.+.+++++++
T Consensus 108 Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k 140 (300)
T KOG1201|consen 108 VKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQK 140 (300)
T ss_pred HHHhcCCceEEEeccccccCCCccCCCHHHHHH
Confidence 22368999987633 33355555444
No 394
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=67.27 E-value=26 Score=34.26 Aligned_cols=90 Identities=12% Similarity=-0.027 Sum_probs=52.5
Q ss_pred ccEEEeecCccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCcE
Q 023562 159 LVALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l~~~---~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~f 231 (280)
.+++=+||| .++..+++. ....++.+|.+++.++.+++. ....+.+|..+.. ..-+++
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-------------g~~~i~GD~~~~~~L~~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-------------GIRAVLGNAANEEIMQLAHLDCA 482 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-------------CCeEEEcCCCCHHHHHhcCcccc
Confidence 456666555 455555443 223699999999999888752 2567888887742 222477
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|.+++.-. +++-...+-.+.+...|.-.++..
T Consensus 483 ~~viv~~~-----~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 483 RWLLLTIP-----NGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred CEEEEEcC-----ChHHHHHHHHHHHHHCCCCeEEEE
Confidence 86655322 112222333344556777777654
No 395
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=66.78 E-value=12 Score=34.84 Aligned_cols=46 Identities=11% Similarity=-0.109 Sum_probs=37.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~ 201 (280)
..++.+||-|..|-.+..-+ +..++.+|++||+|+.++...+-+..
T Consensus 33 i~~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 56778999998887777665 55778899999999999887766543
No 396
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=66.53 E-value=49 Score=29.69 Aligned_cols=98 Identities=16% Similarity=0.046 Sum_probs=53.9
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc---CCCCCCCCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP---LQDFTPETG 229 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d---~~~~~~~~~ 229 (280)
..++.+||=.|||. |..+..+++. +...|.+++.++.-++.+++.-... -++....+ +... ....
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~---------~i~~~~~~~~~~~~~-~~~~ 227 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQ---------TFNSREMSAPQIQSV-LREL 227 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCce---------EecCcccCHHHHHHH-hcCC
Confidence 34567888888743 3334444444 3334789999999888876532110 01111101 1111 1123
Q ss_pred cEE-EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 230 RYD-VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 230 ~fD-lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.+| +|+-+-. . ...+....+.|++||.+++.-.
T Consensus 228 ~~d~~v~d~~G--~------~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 228 RFDQLILETAG--V------PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CCCeEEEECCC--C------HHHHHHHHHHhhcCCEEEEEcc
Confidence 566 5543211 1 1467778899999999998643
No 397
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=66.43 E-value=13 Score=30.78 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=32.2
Q ss_pred CCCcEEEEEccchhhcCCh----------hhHHHHHHHHHHcCCCCcEEEEE
Q 023562 227 ETGRYDVIWVQWCIGHLTD----------DDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~----------~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+.++.|+|+++++++-+.- .++++++.++.++|+|+..++..
T Consensus 47 ~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~ 98 (183)
T cd01842 47 EGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWN 98 (183)
T ss_pred cCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEe
Confidence 3478999999988764432 35778888888999999888775
No 398
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=66.17 E-value=78 Score=27.79 Aligned_cols=91 Identities=25% Similarity=0.184 Sum_probs=54.7
Q ss_pred CCCCccEEEeecCccHHHHHH---HHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcE
Q 023562 155 NNQHLVALDCGSGIGRITKNL---LIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l---~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 231 (280)
..++.+||=.|+ |.++..+ ++....++++++.+++..+.+++ +... . ..+.... .....+
T Consensus 153 ~~~g~~vlV~g~--g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g~~--------~-----~~~~~~~-~~~~~~ 215 (319)
T cd08242 153 ITPGDKVAVLGD--GKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LGVE--------T-----VLPDEAE-SEGGGF 215 (319)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCCc--------E-----EeCcccc-ccCCCC
Confidence 445678888865 4444433 43333359999999999998887 3221 0 0111111 123568
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|+|+.... . ...+..+.+.|+++|.+++...
T Consensus 216 d~vid~~g-----~---~~~~~~~~~~l~~~g~~v~~~~ 246 (319)
T cd08242 216 DVVVEATG-----S---PSGLELALRLVRPRGTVVLKST 246 (319)
T ss_pred CEEEECCC-----C---hHHHHHHHHHhhcCCEEEEEcc
Confidence 98886421 1 1356777888999999987433
No 399
>PRK08324 short chain dehydrogenase; Validated
Probab=66.11 E-value=32 Score=34.55 Aligned_cols=104 Identities=22% Similarity=0.143 Sum_probs=60.0
Q ss_pred CCccEEEeecCcc--H-HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----C--
Q 023562 157 QHLVALDCGSGIG--R-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-- 226 (280)
Q Consensus 157 ~~~~VLDlGcG~G--~-~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-- 226 (280)
.+.+||-.|++.| . ++..+++++. +|.++|.++.-++.+.+.+.. ..++.++.+|+.+.. .
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~--------~~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGG--------PDRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhc--------cCcEEEEEecCCCHHHHHHHHHH
Confidence 3467888886433 2 2333444555 699999998877766555432 124677888876642 0
Q ss_pred ---CCCcEEEEEccchhhc------CChhh-----------HHHHHHHHHHcCCC---CcEEEEEe
Q 023562 227 ---ETGRYDVIWVQWCIGH------LTDDD-----------FVSFFKRAKVGLKP---GGFFVLKE 269 (280)
Q Consensus 227 ---~~~~fDlV~~~~~l~~------~~~~d-----------~~~~l~~~~r~Lkp---GG~lii~e 269 (280)
..+.+|+|+.+-.... .+.++ ...+++.+.+.+++ ||.|++.-
T Consensus 492 ~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 492 AALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 0136899887643211 11111 23455666666666 67777653
No 400
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=66.00 E-value=12 Score=33.55 Aligned_cols=46 Identities=20% Similarity=0.134 Sum_probs=36.3
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA 201 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~ 201 (280)
...+.+|+-+|.|-.+...++ .+.+.+|++||+++..|..-+-+++
T Consensus 61 ~g~ghrivtigSGGcn~L~yl-sr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYL-SRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred cCCCcEEEEecCCcchHHHHh-hcCCceeEEEeCCHHHHHHHHHHHH
Confidence 345679999999988777755 4668899999999999987665544
No 401
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.48 E-value=18 Score=31.88 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=53.5
Q ss_pred cEEEeecCcc--HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcC-------CCCCCC----CCcceeEEEccCCCCCC
Q 023562 160 VALDCGSGIG--RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE-------NHMAPD----MHKATNFFCVPLQDFTP 226 (280)
Q Consensus 160 ~VLDlGcG~G--~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~-------~~~~~~----~~~~i~~~~~d~~~~~~ 226 (280)
+|.=||+|.= .++..+++.++ .|+++|.+++.++.+.++.... +..... ...++++ ..++.+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~-- 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA-- 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh--
Confidence 5778888742 34444555566 5999999999999877543210 000000 0001111 1222211
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
-...|+|+.+-.- . .+-...++.++.+.++|+.++..
T Consensus 79 -~~~aD~Vi~avpe-~--~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 79 -VADADLVIEAVPE-K--LELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred -hcCCCEEEEeccC-C--HHHHHHHHHHHHhhCCCCcEEEE
Confidence 1356888765321 0 01235778888899999876543
No 402
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=65.47 E-value=26 Score=34.87 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=56.4
Q ss_pred ccEEEeecCcc-HHHHH-HHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCcEE
Q 023562 159 LVALDCGSGIG-RITKN-LLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (280)
Q Consensus 159 ~~VLDlGcG~G-~~s~~-l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD 232 (280)
.+|+=+|||.= ..... |.+++. .++.+|.+++.++.+++. ....+.+|.++.. ..-++.|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-------------g~~v~~GDat~~~~L~~agi~~A~ 466 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF-------------GMKVFYGDATRMDLLESAGAAKAE 466 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc-------------CCeEEEEeCCCHHHHHhcCCCcCC
Confidence 57888877752 22222 233344 599999999999988652 1456888887753 2224778
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
++++... +++....+-...+.+.|.-.++..
T Consensus 467 ~vvv~~~-----d~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 467 VLINAID-----DPQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred EEEEEeC-----CHHHHHHHHHHHHHhCCCCeEEEE
Confidence 8776543 334334555556666777666653
No 403
>PRK06701 short chain dehydrogenase; Provisional
Probab=65.37 E-value=28 Score=30.60 Aligned_cols=105 Identities=16% Similarity=0.133 Sum_probs=55.6
Q ss_pred CccEEEeecCccH---HHHHHHHhcCCcEEEEeCCH-HHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-----C-
Q 023562 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVS-HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----E- 227 (280)
Q Consensus 158 ~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~-~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~- 227 (280)
++++|-.|++.|. ++..|++++. +|.+++.++ ..++.....+... +.++.++.+|+.+... .
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~ 117 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKE-------GVKCLLIPGDVSDEAFCKDAVEE 117 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhc-------CCeEEEEEccCCCHHHHHHHHHH
Confidence 4578888875542 3444555555 588887664 2233333333221 2356778888876420 0
Q ss_pred ----CCcEEEEEccchhhc-------CChhh-----------HHHHHHHHHHcCCCCcEEEEEec
Q 023562 228 ----TGRYDVIWVQWCIGH-------LTDDD-----------FVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 228 ----~~~fDlV~~~~~l~~-------~~~~d-----------~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
-+++|+|+.+-...+ .+.++ ...+++.+.+.++++|.|++.-.
T Consensus 118 i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 118 TVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred HHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 135788875532211 11111 22344555666677787776543
No 404
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=64.04 E-value=42 Score=30.18 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=56.1
Q ss_pred cEEEeecCc--cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 160 ~VLDlGcG~--G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
+|+=+|||. |.++..|.+.+ ..|+.+--++. ++..+++ |+.-.....+..+...-.. .+.....+|+|+..
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~----GL~i~~~~~~~~~~~~~~~-~~~~~~~~Dlviv~ 74 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKK----GLRIEDEGGNFTTPVVAAT-DAEALGPADLVIVT 74 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HHHHHhC----CeEEecCCCcccccccccc-ChhhcCCCCEEEEE
Confidence 577788875 45666666666 55777766665 6665554 2110000000011111111 11112479999875
Q ss_pred chhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
-=- | +...+++.+...++|...+++.-|
T Consensus 75 vKa-~----q~~~al~~l~~~~~~~t~vl~lqN 102 (307)
T COG1893 75 VKA-Y----QLEEALPSLAPLLGPNTVVLFLQN 102 (307)
T ss_pred ecc-c----cHHHHHHHhhhcCCCCcEEEEEeC
Confidence 321 1 556899999999999998887654
No 405
>PRK08507 prephenate dehydrogenase; Validated
Probab=64.01 E-value=32 Score=30.13 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=48.1
Q ss_pred cEEEeecCc--cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 160 VALDCGSGI--GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 160 ~VLDlGcG~--G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
+|.=+|+|. |.++..+.+.++. .|.++|.++..++.+++.- . +. ...+..+. ...|+|+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g----~--------~~-~~~~~~~~----~~aD~Vil 64 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELG----L--------VD-EIVSFEEL----KKCDVIFL 64 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCC----C--------Cc-ccCCHHHH----hcCCEEEE
Confidence 456677765 3445555555543 6999999998887765321 0 00 01122111 12688876
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (280)
+-. +.....++..+.. +++|..++
T Consensus 65 avp-----~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 65 AIP-----VDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred eCc-----HHHHHHHHHHHhc-cCCCCEEE
Confidence 543 3455677888877 88776444
No 406
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.98 E-value=60 Score=28.17 Aligned_cols=103 Identities=16% Similarity=0.109 Sum_probs=54.9
Q ss_pred CccEEEeecCc----c-HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 158 HLVALDCGSGI----G-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 158 ~~~VLDlGcG~----G-~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
+..+|-.|++. | .++..|++.+. +|..++.++...+..++..... +. ..++.+|+.+..
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~-------g~-~~~~~~Dv~d~~~v~~~~~ 77 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESL-------GS-DFVLPCDVEDIASVDAVFE 77 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhc-------CC-ceEEeCCCCCHHHHHHHHH
Confidence 45788888764 3 34555566666 4888877654333333322211 11 235677887642
Q ss_pred ---CCCCcEEEEEccchhh----------cCChhhHHH-----------HHHHHHHcCCCCcEEEEEe
Q 023562 226 ---PETGRYDVIWVQWCIG----------HLTDDDFVS-----------FFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 ---~~~~~fDlV~~~~~l~----------~~~~~d~~~-----------~l~~~~r~LkpGG~lii~e 269 (280)
...++.|+++.+-.+. .++.+++.. +.+.+...|+.+|.|+..-
T Consensus 78 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~is 145 (271)
T PRK06505 78 ALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLT 145 (271)
T ss_pred HHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEc
Confidence 0125789988764332 123333333 2344556666678776543
No 407
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=63.66 E-value=19 Score=31.04 Aligned_cols=70 Identities=21% Similarity=0.207 Sum_probs=46.2
Q ss_pred ccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 159 LVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 159 ~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
.++|=+|.= +|.+....+.... .|+.+|+.|.+.+... .++.|...- ......+|+|+-.
T Consensus 43 k~~lI~G~YltG~~iA~~L~~~~-eV~lvDI~p~lk~ll~--------------~~i~F~~~~----~~~~~~~DlIID~ 103 (252)
T PF06690_consen 43 KQALIFGAYLTGNFIASALSKKC-EVTLVDIHPHLKELLN--------------ENIKFMEFR----NGLEGNPDLIIDT 103 (252)
T ss_pred ceEEEEEEEeehHHHHHHhccCc-eEEEEeCcHHHHHHhc--------------CCCceeecc----CCCCCCCCEEEEC
Confidence 378888864 4545444555555 7999999999988662 235566221 1113689999988
Q ss_pred chhhcCChhh
Q 023562 238 WCIGHLTDDD 247 (280)
Q Consensus 238 ~~l~~~~~~d 247 (280)
-.+.-++++.
T Consensus 104 TGlGGv~~~~ 113 (252)
T PF06690_consen 104 TGLGGVDPDF 113 (252)
T ss_pred CCCCCCCHHH
Confidence 8887776543
No 408
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=63.41 E-value=30 Score=27.56 Aligned_cols=98 Identities=13% Similarity=0.061 Sum_probs=54.9
Q ss_pred cEEEeecCccHHHHH--HHHhcCCcEEEEeCCHHHHHHHHHHcCcCCC-CCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 160 VALDCGSGIGRITKN--LLIRYFNEVDLLEPVSHFLDAARESLAPENH-MAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~--l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~-~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
+|.=+|+|.+..+.. ++.++ .+|+....+++.++..++.-..... .......++.+ ..|+++.- ...|+|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~---~~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL---EDADIIII 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH---TT-SEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh---CcccEEEe
Confidence 356688887765443 33334 4799999999988887775442211 11111223332 23432211 34577775
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
.-. ....+.+++++...++++-.+++
T Consensus 76 avP-----s~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 76 AVP-----SQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp -S------GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred ccc-----HHHHHHHHHHHhhccCCCCEEEE
Confidence 422 22455899999999987777665
No 409
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=62.80 E-value=20 Score=33.48 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=45.5
Q ss_pred ccEEEeecCc-cHHHHH-HHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC---CCCcEEE
Q 023562 159 LVALDCGSGI-GRITKN-LLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---ETGRYDV 233 (280)
Q Consensus 159 ~~VLDlGcG~-G~~s~~-l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~fDl 233 (280)
.+||=+|||. |..... +++++-.+|++.|-|....+.+..... .+++....|+.+.+- --..+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----------~~v~~~~vD~~d~~al~~li~~~d~ 71 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----------GKVEALQVDAADVDALVALIKDFDL 71 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----------ccceeEEecccChHHHHHHHhcCCE
Confidence 4799999943 322222 233442479999999888888776642 257888888877631 0135699
Q ss_pred EEccc
Q 023562 234 IWVQW 238 (280)
Q Consensus 234 V~~~~ 238 (280)
|++.-
T Consensus 72 VIn~~ 76 (389)
T COG1748 72 VINAA 76 (389)
T ss_pred EEEeC
Confidence 98663
No 410
>PRK12937 short chain dehydrogenase; Provisional
Probab=62.49 E-value=63 Score=27.02 Aligned_cols=104 Identities=19% Similarity=0.169 Sum_probs=52.6
Q ss_pred CccEEEeecCcc---HHHHHHHHhcCCcEEEEeC-CHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----C--
Q 023562 158 HLVALDCGSGIG---RITKNLLIRYFNEVDLLEP-VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-- 226 (280)
Q Consensus 158 ~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~-S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-- 226 (280)
+.++|=.|++.| .++..|++++.. +..+.. ++...+...+.+... ..++.++..|+.+.. .
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~ 76 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGFA-VAVNYAGSAAAADELVAEIEAA-------GGRAIAVQADVADAAAVTRLFDA 76 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCCCHHHHHHHHHHHHhc-------CCeEEEEECCCCCHHHHHHHHHH
Confidence 457888887543 223344445554 655543 333233222222211 235778888887642 0
Q ss_pred ---CCCcEEEEEccchhh------cCChhhHH-----------HHHHHHHHcCCCCcEEEEEe
Q 023562 227 ---ETGRYDVIWVQWCIG------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 227 ---~~~~fDlV~~~~~l~------~~~~~d~~-----------~~l~~~~r~LkpGG~lii~e 269 (280)
..++.|+++.+-... ..+.+++. .+++.+.+.++++|.|++.-
T Consensus 77 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 139 (245)
T PRK12937 77 AETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS 139 (245)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence 013578888653321 12222221 23455666677788877763
No 411
>PRK12744 short chain dehydrogenase; Provisional
Probab=62.25 E-value=72 Score=27.08 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=52.2
Q ss_pred CccEEEeecCcc---HHHHHHHHhcCCcEEEEeCC----HHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC----
Q 023562 158 HLVALDCGSGIG---RITKNLLIRYFNEVDLLEPV----SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---- 226 (280)
Q Consensus 158 ~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S----~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---- 226 (280)
+.++|=.|++.| .++..|+++++. |..++.+ ...++...+.+... +.++.++..|+.+...
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~~-vv~i~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~~~~~~~~ 79 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGAK-AVAIHYNSAASKADAEETVAAVKAA-------GAKAVAFQADLTTAAAVEKL 79 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCc-EEEEecCCccchHHHHHHHHHHHHh-------CCcEEEEecCcCCHHHHHHH
Confidence 457888886554 233344444554 5555432 23333322222211 2357778888876420
Q ss_pred ------CCCcEEEEEccchh------hcCChhhHH-----------HHHHHHHHcCCCCcEEEE
Q 023562 227 ------ETGRYDVIWVQWCI------GHLTDDDFV-----------SFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 227 ------~~~~fDlV~~~~~l------~~~~~~d~~-----------~~l~~~~r~LkpGG~lii 267 (280)
..++.|+++.+-.. ...+.+++. .+++.+...++++|.+++
T Consensus 80 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 80 FDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred HHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 11468988866432 223333322 245666677777776654
No 412
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=62.18 E-value=84 Score=28.45 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=66.8
Q ss_pred CCCccEEEeecCccHHHHHHHHhc-CC--cEEEEeCCHHHHHHHHHHcCcCC------CCCCC-C--------CcceeEE
Q 023562 156 NQHLVALDCGSGIGRITKNLLIRY-FN--EVDLLEPVSHFLDAARESLAPEN------HMAPD-M--------HKATNFF 217 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~~~~-~~--~v~~vD~S~~~l~~A~~~~~~~~------~~~~~-~--------~~~i~~~ 217 (280)
.....|+.+|||.=.....|+..+ .. .+.=||+++.............. +...+ . ..+-..+
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~ 165 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLI 165 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeee
Confidence 355789999999999999888776 33 55666777666655522111110 00000 0 0122233
Q ss_pred EccCCCCC----------CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccCCC
Q 023562 218 CVPLQDFT----------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS 274 (280)
Q Consensus 218 ~~d~~~~~----------~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~~~~ 274 (280)
-+|+.++. ...+-.-++++--++.|++++.-..+++.+.+... .+.+++.|.+...
T Consensus 166 g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~ 231 (335)
T KOG2918|consen 166 GCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPN 231 (335)
T ss_pred ccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCC
Confidence 33444331 00111233344467889998887788888888764 4556677777643
No 413
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=62.09 E-value=96 Score=27.62 Aligned_cols=95 Identities=20% Similarity=0.152 Sum_probs=53.6
Q ss_pred CCCccEEEeecC-ccHHHHHHHHhcCCc-EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccC----CCCCCCCC
Q 023562 156 NQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPETG 229 (280)
Q Consensus 156 ~~~~~VLDlGcG-~G~~s~~l~~~~~~~-v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~----~~~~~~~~ 229 (280)
.++.+||-.|+| .|..+..+++....+ |.+++.++.-.+.+++.-.. .-++....++ ..+ ....
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~---------~~v~~~~~~~~~~l~~~-~~~~ 229 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGAT---------YVVNPFKEDVVKEVADL-TDGE 229 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc---------EEEcccccCHHHHHHHh-cCCC
Confidence 355677776654 345555566554444 88888888777776654211 0011111111 111 1224
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+|+|+.+.. . . ..+..+.+.|+++|.++..
T Consensus 230 ~~d~vld~~g----~--~--~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 230 GVDVFLEMSG----A--P--KALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCCEEEECCC----C--H--HHHHHHHHhhcCCCEEEEE
Confidence 6899986521 1 1 4577788899999998775
No 414
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=62.07 E-value=30 Score=31.56 Aligned_cols=95 Identities=15% Similarity=0.028 Sum_probs=49.3
Q ss_pred CCCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEE-ccCCCCCCCCCcEEE
Q 023562 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDV 233 (280)
Q Consensus 156 ~~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fDl 233 (280)
.++.+||-.|+| .|..+..+++....++++++.++.-...+.+.+... .-++... ..+.... +.+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~--------~vi~~~~~~~~~~~~---~~~D~ 250 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGAD--------SFLVSTDPEKMKAAI---GTMDY 250 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCc--------EEEcCCCHHHHHhhc---CCCCE
Confidence 356688888874 244455555554446888887765433222222110 0000000 0111111 24788
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+-.-. . . ..+..+.+.|++||.+++.-
T Consensus 251 vid~~g-----~-~--~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 251 IIDTVS-----A-V--HALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred EEECCC-----C-H--HHHHHHHHHhcCCcEEEEeC
Confidence 874322 0 1 35677888999999998763
No 415
>PRK06484 short chain dehydrogenase; Validated
Probab=61.70 E-value=67 Score=30.69 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=59.6
Q ss_pred CCccEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----C--
Q 023562 157 QHLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-- 226 (280)
Q Consensus 157 ~~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-- 226 (280)
.+..+|=.|++.| .++..|++++. +|.+++.++.-++...+... ....++..|+.+.. .
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~ 336 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALG----------DEHLSVQADITDEAAVESAFAQ 336 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----------CceeEEEccCCCHHHHHHHHHH
Confidence 3457787777665 23444555565 59999998877776655432 23455677876642 0
Q ss_pred ---CCCcEEEEEccchhh-------cCChhhHHH-----------HHHHHHHcCCCCcEEEEEec
Q 023562 227 ---ETGRYDVIWVQWCIG-------HLTDDDFVS-----------FFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 227 ---~~~~fDlV~~~~~l~-------~~~~~d~~~-----------~l~~~~r~LkpGG~lii~e~ 270 (280)
.-+++|+++.+-.+. ..+.+++.. +.+.+...++.+|.|++.-.
T Consensus 337 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS 401 (520)
T PRK06484 337 IQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGS 401 (520)
T ss_pred HHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECc
Confidence 114689998763321 222223222 24555566677788877533
No 416
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=61.34 E-value=28 Score=27.19 Aligned_cols=44 Identities=14% Similarity=0.019 Sum_probs=27.3
Q ss_pred CCccEEEeecCc--cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHc
Q 023562 157 QHLVALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (280)
Q Consensus 157 ~~~~VLDlGcG~--G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~ 200 (280)
++.+|+-+|||. ...+..+.+.+...|+++|.++.-.+...+..
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~ 63 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERF 63 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH
Confidence 456899999863 12233333333457999999987766554443
No 417
>PRK06139 short chain dehydrogenase; Provisional
Probab=61.09 E-value=26 Score=31.70 Aligned_cols=73 Identities=18% Similarity=0.050 Sum_probs=45.8
Q ss_pred CccEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----C---
Q 023562 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P--- 226 (280)
Q Consensus 158 ~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~--- 226 (280)
+++||=.|++.|. ++..+++++. +|.+++.++..++...+.+... +..+.++..|+.+.. .
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~-------g~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRAL-------GAEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhc-------CCcEEEEEeeCCCHHHHHHHHHHH
Confidence 4578888875442 3344555565 5999999988887666554332 234667777887532 0
Q ss_pred --CCCcEEEEEccc
Q 023562 227 --ETGRYDVIWVQW 238 (280)
Q Consensus 227 --~~~~fDlV~~~~ 238 (280)
..+++|+++.+-
T Consensus 79 ~~~~g~iD~lVnnA 92 (330)
T PRK06139 79 ASFGGRIDVWVNNV 92 (330)
T ss_pred HHhcCCCCEEEECC
Confidence 015689998763
No 418
>PLN02688 pyrroline-5-carboxylate reductase
Probab=60.93 E-value=36 Score=29.46 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=49.1
Q ss_pred cEEEeecCc--cHHHHHHHHhcC---CcEEEE-eCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 160 VALDCGSGI--GRITKNLLIRYF---NEVDLL-EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 160 ~VLDlGcG~--G~~s~~l~~~~~---~~v~~v-D~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
+|.=||||. +.++..|++.++ ..++++ +.++...+.+.+. + +.. ..+..+.. ...|+
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~----g---------~~~-~~~~~e~~---~~aDv 64 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSL----G---------VKT-AASNTEVV---KSSDV 64 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHc----C---------CEE-eCChHHHH---hcCCE
Confidence 466678775 345555665554 258888 8888776554331 1 111 12222211 34688
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~li 266 (280)
|+.+- ++.....++..+...+++|..++
T Consensus 65 Vil~v-----~~~~~~~vl~~l~~~~~~~~~iI 92 (266)
T PLN02688 65 IILAV-----KPQVVKDVLTELRPLLSKDKLLV 92 (266)
T ss_pred EEEEE-----CcHHHHHHHHHHHhhcCCCCEEE
Confidence 87654 24467788888887788876554
No 419
>PLN02827 Alcohol dehydrogenase-like
Probab=60.01 E-value=58 Score=29.91 Aligned_cols=97 Identities=13% Similarity=-0.017 Sum_probs=53.6
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEE--ccCCC-CC-CCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--VPLQD-FT-PET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~--~d~~~-~~-~~~ 228 (280)
..++.+||-.|+|. |..+..+++. +...|+++|.++.-++.+++.-.. .-++... .+... +. ...
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~---------~~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVT---------DFINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc---------EEEcccccchHHHHHHHHHhC
Confidence 45677899888642 3333444443 443588999999988888654211 0011110 01100 00 111
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCC-cEEEEE
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLK 268 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~ 268 (280)
+.+|+|+-.-. . . ..+....+.|++| |.+++.
T Consensus 262 ~g~d~vid~~G--~----~--~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 262 GGADYSFECVG--D----T--GIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCCCEEEECCC--C----h--HHHHHHHHhhccCCCEEEEE
Confidence 25888875422 1 1 3566778889998 999874
No 420
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=59.83 E-value=31 Score=29.90 Aligned_cols=95 Identities=18% Similarity=0.120 Sum_probs=54.8
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccC----CCCCCCC
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~----~~~~~~~ 228 (280)
..++.+||-.|| +.|..+..++......|..++.++...+.+++.... .-+.....+. ... ...
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~i~~~-~~~ 206 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGAD---------HVIDYRDPDLRERVKAL-TGG 206 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcCCc---------eeeecCCccHHHHHHHH-cCC
Confidence 345678999998 456666666665444699999998888877543110 0001000011 111 112
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
..+|+++.+.. . ..+..+.+.++++|.++..
T Consensus 207 ~~~d~v~~~~g-------~--~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 207 RGVDVVYDPVG-------G--DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred CCcEEEEECcc-------H--HHHHHHHHhhccCCEEEEE
Confidence 35898875432 1 2445567888999988764
No 421
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=59.28 E-value=71 Score=28.61 Aligned_cols=100 Identities=9% Similarity=0.042 Sum_probs=53.5
Q ss_pred cEEEeecCcc--HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCC-CCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 160 VALDCGSGIG--RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN-HMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 160 ~VLDlGcG~G--~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~-~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
+|.=+|||.= .++..|.+.+. .|+.++.+++.++..++...... +.......++.+. .|..+. . .+.+|+|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~-~-~~~~Dliii 77 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEV-L-SDNATCIIL 77 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHH-H-hCCCCEEEE
Confidence 4677888753 23444444444 59999998887776665321100 0000011112221 122111 0 135788765
Q ss_pred cchhhcCChhhHHHHHHHHHH-cCCCCcEEEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLK 268 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r-~LkpGG~lii~ 268 (280)
. +++.++..+++.+.. .++++..+++.
T Consensus 78 a-----vks~~~~~~l~~l~~~~l~~~~~vv~~ 105 (326)
T PRK14620 78 A-----VPTQQLRTICQQLQDCHLKKNTPILIC 105 (326)
T ss_pred E-----eCHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 4 233466788999987 88888766654
No 422
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=59.09 E-value=39 Score=30.20 Aligned_cols=101 Identities=17% Similarity=0.060 Sum_probs=51.1
Q ss_pred CccEEEeecCc-c-HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 158 HLVALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 158 ~~~VLDlGcG~-G-~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
..+|+=+|+|. | .++..|.+.+. .|+.+.-++ .+..+++ ++..........+..............||+|+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~--~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD--YEAVREN----GLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVL 77 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC--HHHHHhC----CeEEEeCCCCeeecCceEEcchhhcCCCCEEE
Confidence 45799998875 3 34444444454 588888765 2322221 11000000001111000111111125789998
Q ss_pred ccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
..-=-. +...+++.+...++|++.++..-|
T Consensus 78 lavK~~-----~~~~~~~~l~~~~~~~~~iv~lqN 107 (313)
T PRK06249 78 VGLKTT-----ANALLAPLIPQVAAPDAKVLLLQN 107 (313)
T ss_pred EEecCC-----ChHhHHHHHhhhcCCCCEEEEecC
Confidence 763221 334688888888999998877644
No 423
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=58.77 E-value=67 Score=29.02 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=52.3
Q ss_pred ccEEEeecCc-cHHHHH-HHHhcCCcEEEEeCCHHHH-----HHHHHHcCcCCCCCCCCCcceeEEE-ccCCCCCCCCCc
Q 023562 159 LVALDCGSGI-GRITKN-LLIRYFNEVDLLEPVSHFL-----DAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGR 230 (280)
Q Consensus 159 ~~VLDlGcG~-G~~s~~-l~~~~~~~v~~vD~S~~~l-----~~A~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~ 230 (280)
.+|.=+|+|. |..... ++..+...+..+|+++... +........ ....++.. .|.+++ ..
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~--------~~~~~I~~~~d~~~l----~~ 74 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIA--------GSNSKVIGTNNYEDI----AG 74 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhcc--------CCCeEEEECCCHHHh----CC
Confidence 5899999987 332222 3344544699999999853 222211100 12234443 454433 24
Q ss_pred EEEEEccchhh--------------cCC--hhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 231 YDVIWVQWCIG--------------HLT--DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 231 fDlV~~~~~l~--------------~~~--~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.|+|+...... .+. -+-+.++++.+.+.. |.|++++.-|
T Consensus 75 aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sN 129 (321)
T PTZ00082 75 SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITN 129 (321)
T ss_pred CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 58888743111 000 012455666666665 7777777666
No 424
>PRK07680 late competence protein ComER; Validated
Probab=58.76 E-value=34 Score=29.87 Aligned_cols=88 Identities=10% Similarity=0.096 Sum_probs=51.4
Q ss_pred cEEEeecCc--cHHHHHHHHhcC---CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 160 VALDCGSGI--GRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 160 ~VLDlGcG~--G~~s~~l~~~~~---~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
+|.=||||. +.++..|.+.+. ..|.+++.++...+...+... .+.. ..+..+.. ...|+|
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~-----------g~~~-~~~~~~~~---~~aDiV 66 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP-----------GIHV-AKTIEEVI---SQSDLI 66 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC-----------CeEE-ECCHHHHH---HhCCEE
Confidence 366688776 334455555553 368999999877665544321 1221 12222211 356888
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
+..- ++.+...+++.+...++++..++-
T Consensus 67 ilav-----~p~~~~~vl~~l~~~l~~~~~iis 94 (273)
T PRK07680 67 FICV-----KPLDIYPLLQKLAPHLTDEHCLVS 94 (273)
T ss_pred EEec-----CHHHHHHHHHHHHhhcCCCCEEEE
Confidence 6653 345677888888888888775553
No 425
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=58.54 E-value=1.3e+02 Score=27.15 Aligned_cols=94 Identities=18% Similarity=0.096 Sum_probs=53.6
Q ss_pred CCCccEEEeecC-ccHHHHHHHHhcCCc-EEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC------CCC
Q 023562 156 NQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------TPE 227 (280)
Q Consensus 156 ~~~~~VLDlGcG-~G~~s~~l~~~~~~~-v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~------~~~ 227 (280)
.++.+||-.|+| .|..+..+++..... +.+++.++...+.+++.-.. .++..+-.++ ...
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~------------~v~~~~~~~~~~~l~~~~~ 253 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGAT------------HTVNAAKEDAVAAIREITG 253 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCc------------eEecCCcccHHHHHHHHhC
Confidence 455677766654 445555555554434 99999898888877543111 1111111111 012
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
...+|+|+..-. . . ..+..+.+.|+++|.++...
T Consensus 254 ~~~~d~vld~vg-----~-~--~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 254 GRGVDVVVEALG-----K-P--ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCCCEEEEeCC-----C-H--HHHHHHHHHHhcCCEEEEEc
Confidence 246898875422 1 1 25677888999999988763
No 426
>PRK06484 short chain dehydrogenase; Validated
Probab=58.48 E-value=72 Score=30.47 Aligned_cols=72 Identities=19% Similarity=0.122 Sum_probs=45.1
Q ss_pred CCccEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--------
Q 023562 157 QHLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 225 (280)
+++.+|=.|++.| .++..|++++. +|.+++.++.-++...+.+. .++.++..|+.+..
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~ 72 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLG----------PDHHALAMDVSDEAQIREGFEQ 72 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----------CceeEEEeccCCHHHHHHHHHH
Confidence 3457888888776 34445555565 59999988877765554432 23566778876542
Q ss_pred --CCCCcEEEEEccch
Q 023562 226 --PETGRYDVIWVQWC 239 (280)
Q Consensus 226 --~~~~~fDlV~~~~~ 239 (280)
...+.+|+++.+..
T Consensus 73 ~~~~~g~iD~li~nag 88 (520)
T PRK06484 73 LHREFGRIDVLVNNAG 88 (520)
T ss_pred HHHHhCCCCEEEECCC
Confidence 01146899887643
No 427
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=58.46 E-value=22 Score=29.77 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=24.4
Q ss_pred CccEEEeecCc-c-HHHHHHHHhcCCcEEEEeCC
Q 023562 158 HLVALDCGSGI-G-RITKNLLIRYFNEVDLLEPV 189 (280)
Q Consensus 158 ~~~VLDlGcG~-G-~~s~~l~~~~~~~v~~vD~S 189 (280)
..+|+=+|||. | .++..|+..++.+++.+|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35899999984 3 35566666788789999988
No 428
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=58.32 E-value=87 Score=29.17 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=26.7
Q ss_pred cEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHc
Q 023562 160 VALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (280)
Q Consensus 160 ~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~ 200 (280)
+|-=+|.| -|.-...++..++ +|+++|+++.-++..++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~-~VigvD~d~~kv~~l~~g~ 42 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNH-EVVALDILPSRVAMLNDRI 42 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-cEEEEECCHHHHHHHHcCC
Confidence 35566777 3433333444554 5999999999999887643
No 429
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=58.26 E-value=79 Score=29.59 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=53.0
Q ss_pred cEEEeecCccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----CCCCcEE
Q 023562 160 VALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~---~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD 232 (280)
+|+=+|| |.++..+++. ....|.++|.++.-++.+++.. .+.++.+|..+.. .....+|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~------------~~~~~~gd~~~~~~l~~~~~~~a~ 67 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL------------DVRTVVGNGSSPDVLREAGAEDAD 67 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc------------CEEEEEeCCCCHHHHHHcCCCcCC
Confidence 4666666 6777766653 2236999999999888776532 2456667765431 1124688
Q ss_pred EEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 233 lV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
.|++... +++....+....+.+.|.-.+++
T Consensus 68 ~vi~~~~-----~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 68 LLIAVTD-----SDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred EEEEecC-----ChHHHHHHHHHHHHhcCCCeEEE
Confidence 8776532 22334555556666655555444
No 430
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=58.18 E-value=21 Score=27.87 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=28.7
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
..+||+|+.+-=- .+....++.+...+.|+..+++.-|
T Consensus 65 ~~~~D~viv~vKa-----~~~~~~l~~l~~~~~~~t~iv~~qN 102 (151)
T PF02558_consen 65 AGPYDLVIVAVKA-----YQLEQALQSLKPYLDPNTTIVSLQN 102 (151)
T ss_dssp HSTESEEEE-SSG-----GGHHHHHHHHCTGEETTEEEEEESS
T ss_pred cCCCcEEEEEecc-----cchHHHHHHHhhccCCCcEEEEEeC
Confidence 3689999876221 1566899999999999988888765
No 431
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=58.10 E-value=1.1e+02 Score=27.53 Aligned_cols=95 Identities=19% Similarity=0.149 Sum_probs=52.2
Q ss_pred CCccEEEeecC-ccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc-------CCCCCCC
Q 023562 157 QHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-------LQDFTPE 227 (280)
Q Consensus 157 ~~~~VLDlGcG-~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d-------~~~~~~~ 227 (280)
++.+||=.|+| .|..+..+++.... +|++++.++.-.+.+++. ... .-+.....+ +.+.. .
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~--------~vi~~~~~~~~~~~~~i~~~~-~ 246 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREF-GAD--------ATIDIDELPDPQRRAIVRDIT-G 246 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc-CCC--------eEEcCcccccHHHHHHHHHHh-C
Confidence 56678877753 22333444544443 799999888887777542 110 001111101 11111 1
Q ss_pred CCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
...+|+|+-.-.- . ..+....+.|+++|.+++.-
T Consensus 247 ~~~~d~vid~~g~------~--~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 247 GRGADVVIEASGH------P--AAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCCcEEEECCCC------h--HHHHHHHHHhccCCEEEEEc
Confidence 2468998854210 1 35667778999999998763
No 432
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=58.09 E-value=13 Score=31.15 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=24.2
Q ss_pred CccEEEeecCc-cH-HHHHHHHhcCCcEEEEeCC
Q 023562 158 HLVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPV 189 (280)
Q Consensus 158 ~~~VLDlGcG~-G~-~s~~l~~~~~~~v~~vD~S 189 (280)
..+||=+|||. |. .+..|+..++.+++.+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46899999984 43 5556666687789999977
No 433
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=57.99 E-value=15 Score=28.58 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=44.9
Q ss_pred CCccEEEeecCcc--HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSGIG--RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~G--~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
++.+||=+|+|-- .....|...++.+|+.+.-+..-.+...+.+.. .++.+. ++.++......+|+|
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~---------~~~~~~--~~~~~~~~~~~~Div 79 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG---------VNIEAI--PLEDLEEALQEADIV 79 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG---------CSEEEE--EGGGHCHHHHTESEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc---------ccccee--eHHHHHHHHhhCCeE
Confidence 5679999998643 234445556777899999987655555444422 223333 334433112579999
Q ss_pred Eccchhhc
Q 023562 235 WVQWCIGH 242 (280)
Q Consensus 235 ~~~~~l~~ 242 (280)
+......+
T Consensus 80 I~aT~~~~ 87 (135)
T PF01488_consen 80 INATPSGM 87 (135)
T ss_dssp EE-SSTTS
T ss_pred EEecCCCC
Confidence 98865543
No 434
>PTZ00117 malate dehydrogenase; Provisional
Probab=57.74 E-value=79 Score=28.49 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=55.1
Q ss_pred CccEEEeecCc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHH-cCcCCCCCCCCCcceeEEE-ccCCCCCCCCCcEEE
Q 023562 158 HLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARES-LAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDV 233 (280)
Q Consensus 158 ~~~VLDlGcG~-G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~-~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fDl 233 (280)
..+|.=+|+|. |.....++.. +...+..+|+++..++ +... .... .........+.. .|.+++ ...|+
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~---~~~~~~~~~i~~~~d~~~l----~~ADi 76 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHF---STLVGSNINILGTNNYEDI----KDSDV 76 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhh---ccccCCCeEEEeCCCHHHh----CCCCE
Confidence 45899999988 7655544433 4346999999886543 2221 1110 000011223332 343332 24588
Q ss_pred EEccchhhcCC---h--------hhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 234 IWVQWCIGHLT---D--------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 234 V~~~~~l~~~~---~--------~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
|+.......-+ . +-+.++.+.+.+. .|.+++++..|
T Consensus 77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvsN 123 (319)
T PTZ00117 77 VVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVTN 123 (319)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence 88764321111 0 1245666666666 58887777665
No 435
>PRK06500 short chain dehydrogenase; Provisional
Probab=57.61 E-value=86 Score=26.23 Aligned_cols=69 Identities=22% Similarity=0.262 Sum_probs=39.7
Q ss_pred CccEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--------
Q 023562 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (280)
Q Consensus 158 ~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------- 226 (280)
+.+||=.|++.|. ++..+++++. +|.+++.++..++...+.+. .++.++.+|+.+...
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~ 74 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELG----------ESALVIRADAGDVAAQKALAQAL 74 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhC----------CceEEEEecCCCHHHHHHHHHHH
Confidence 3467777764431 3333444555 59999988766655444332 245677777765420
Q ss_pred --CCCcEEEEEcc
Q 023562 227 --ETGRYDVIWVQ 237 (280)
Q Consensus 227 --~~~~fDlV~~~ 237 (280)
..+++|+|+.+
T Consensus 75 ~~~~~~id~vi~~ 87 (249)
T PRK06500 75 AEAFGRLDAVFIN 87 (249)
T ss_pred HHHhCCCCEEEEC
Confidence 01467888755
No 436
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=57.57 E-value=73 Score=28.26 Aligned_cols=100 Identities=14% Similarity=0.033 Sum_probs=52.8
Q ss_pred cEEEeecCcc--HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCC-CCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 160 VALDCGSGIG--RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN-HMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 160 ~VLDlGcG~G--~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~-~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
+|.=+|+|.= .++..|++.+. .|+++|.++..++..++...... ........++.+ ..+..+. ....|+|+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~D~vi~ 77 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEA---LADADLILV 77 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHH---HhCCCEEEE
Confidence 5777777642 23333444445 59999999988877665421100 000000001111 1121111 135688876
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+-- +.....+++.+...++|+.+++..-
T Consensus 78 ~v~-----~~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 78 AVP-----SQALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred eCC-----HHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 543 2356678888888888887665543
No 437
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=57.16 E-value=1e+02 Score=24.93 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=58.8
Q ss_pred CCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC---C--CCCCcE
Q 023562 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF---T--PETGRY 231 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~--~~~~~f 231 (280)
...+|+-|||=+-.....-......++..+|++...-... .+ .|..-|...- + . .++|
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~---------------~~-~F~fyD~~~p~~~~~~l-~~~~ 87 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG---------------GD-EFVFYDYNEPEELPEEL-KGKF 87 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC---------------Cc-ceEECCCCChhhhhhhc-CCCc
Confidence 4579999999886554432011222799999876554311 11 2444444332 1 2 3799
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+|++---+ +..+-+.++...+.-++|+++.+++.
T Consensus 88 d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162)
T PF10237_consen 88 DVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILC 122 (162)
T ss_pred eEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEe
Confidence 999998554 55555567778888888999988875
No 438
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=56.98 E-value=59 Score=29.47 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=51.3
Q ss_pred CCCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+||-.|+| .|..+..+++....++++++.++...+.+.+.+... ..+ ...+...+......+|+|
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~--------~~i--~~~~~~~~~~~~~~~D~v 248 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGAD--------DYL--VSSDAAEMQEAADSLDYI 248 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCc--------EEe--cCCChHHHHHhcCCCcEE
Confidence 356678877653 344455555554445888888877665554433221 000 000000110001247887
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
+-.-. . ...+..+.+.|++||.++..-.
T Consensus 249 id~~g-----~---~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 249 IDTVP-----V---FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred EECCC-----c---hHHHHHHHHHhccCCEEEEECC
Confidence 74321 0 1366677789999999887643
No 439
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=56.88 E-value=40 Score=30.18 Aligned_cols=96 Identities=18% Similarity=0.067 Sum_probs=53.2
Q ss_pred CCCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc---CCCCCCCCCc
Q 023562 156 NQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP---LQDFTPETGR 230 (280)
Q Consensus 156 ~~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d---~~~~~~~~~~ 230 (280)
.++.+||-.|+|. |..+..+++.... .|.+++-++.-.+.+++.-... -+.....+ +..+. ..+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~~~~~~~-~~~~ 231 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADV---------VINPREEDVVEVKSVT-DGTG 231 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcce---------eeCcccccHHHHHHHc-CCCC
Confidence 3556777777643 5566666665444 5888877777776666432110 00100111 11111 1246
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|+|+.+-. . . ..+..+.+.|+++|.++...
T Consensus 232 vd~vld~~g----~--~--~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 232 VDVVLEMSG----N--P--KAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CCEEEECCC----C--H--HHHHHHHHHhccCCEEEEEc
Confidence 899886422 0 1 35667788899999988753
No 440
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=56.53 E-value=1.1e+02 Score=27.76 Aligned_cols=99 Identities=15% Similarity=0.047 Sum_probs=55.1
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEc--cCCC-C-CCCC
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQD-F-TPET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~ 228 (280)
..++.+||=.|+| .|..+..+++.... .|+++|.++.-++.+++.-.. .-++.... ++.+ . ....
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~---------~~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGAT---------DCVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCC---------EEEcccccchHHHHHHHHHhC
Confidence 4567788888864 23344445544333 699999999999888653211 00111110 0100 0 0111
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCC-cEEEEEec
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 270 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e~ 270 (280)
+.+|+|+-.-. . ...+....+.|+++ |.+++.-.
T Consensus 255 ~g~d~vid~~g--~------~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 255 GGVDYTFECIG--N------VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CCCcEEEECCC--C------hHHHHHHHHhhccCCCeEEEEcc
Confidence 36888875322 1 14667778889887 98887643
No 441
>PRK12743 oxidoreductase; Provisional
Probab=55.74 E-value=81 Score=26.78 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=39.8
Q ss_pred ccEEEeecCccHHHHHH----HHhcCCcEEEEe-CCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-------
Q 023562 159 LVALDCGSGIGRITKNL----LIRYFNEVDLLE-PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (280)
Q Consensus 159 ~~VLDlGcG~G~~s~~l----~~~~~~~v~~vD-~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------- 226 (280)
.+||=.|++.| ++..+ ++++. +|..+. .+...++.+.+.+... +.++.++..|+.+...
T Consensus 3 k~vlItGas~g-iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~ 73 (256)
T PRK12743 3 QVAIVTASDSG-IGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSH-------GVRAEIRQLDLSDLPEGAQALDK 73 (256)
T ss_pred CEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhc-------CCceEEEEccCCCHHHHHHHHHH
Confidence 46888887544 44444 44455 476664 3444444444333221 3457788888876420
Q ss_pred ---CCCcEEEEEccc
Q 023562 227 ---ETGRYDVIWVQW 238 (280)
Q Consensus 227 ---~~~~fDlV~~~~ 238 (280)
..++.|.++.+-
T Consensus 74 ~~~~~~~id~li~~a 88 (256)
T PRK12743 74 LIQRLGRIDVLVNNA 88 (256)
T ss_pred HHHHcCCCCEEEECC
Confidence 114679988763
No 442
>PRK06128 oxidoreductase; Provisional
Probab=55.58 E-value=82 Score=27.69 Aligned_cols=105 Identities=17% Similarity=0.076 Sum_probs=55.3
Q ss_pred CccEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHH--HHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC------
Q 023562 158 HLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSH--FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------ 226 (280)
Q Consensus 158 ~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~--~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------ 226 (280)
+.+||=.|++.| .++..|++++. +|..+..+.. ..+...+.+... ..++.++.+|+.+...
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~v~~~~~ 126 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAE-------GRKAVALPGDLKDEAFCRQLVE 126 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHc-------CCeEEEEecCCCCHHHHHHHHH
Confidence 457888886544 23444455555 4776654432 222222222221 2346678888876420
Q ss_pred ----CCCcEEEEEccchhh-------cCChhhHH-----------HHHHHHHHcCCCCcEEEEEec
Q 023562 227 ----ETGRYDVIWVQWCIG-------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 227 ----~~~~fDlV~~~~~l~-------~~~~~d~~-----------~~l~~~~r~LkpGG~lii~e~ 270 (280)
.-++.|+++.+-... .++.+++. .+++.+...++++|.|++.-.
T Consensus 127 ~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 127 RAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 013679998764321 12222222 345566677788888877643
No 443
>PRK05867 short chain dehydrogenase; Provisional
Probab=55.05 E-value=47 Score=28.20 Aligned_cols=74 Identities=15% Similarity=0.140 Sum_probs=46.9
Q ss_pred CccEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--------
Q 023562 158 HLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (280)
Q Consensus 158 ~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------- 226 (280)
+.++|-.|++.| .++..|++++. +|.+++.++..++...+.+... ..++.++.+|+.+...
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTS-------GGKVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhc-------CCeEEEEEccCCCHHHHHHHHHHH
Confidence 467888887655 23444555566 5999999888777665554332 2346677888876420
Q ss_pred --CCCcEEEEEccch
Q 023562 227 --ETGRYDVIWVQWC 239 (280)
Q Consensus 227 --~~~~fDlV~~~~~ 239 (280)
..++.|+++.+-.
T Consensus 81 ~~~~g~id~lv~~ag 95 (253)
T PRK05867 81 TAELGGIDIAVCNAG 95 (253)
T ss_pred HHHhCCCCEEEECCC
Confidence 0147899886643
No 444
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.99 E-value=1.3e+02 Score=26.19 Aligned_cols=104 Identities=12% Similarity=0.043 Sum_probs=56.0
Q ss_pred CccEEEeecC----ccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 158 HLVALDCGSG----IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 158 ~~~VLDlGcG----~G~-~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
++.+|=.|++ .|. ++..|++.+. +|..++.++...+.+++..... ... .++.+|+.+..
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~-------~~~-~~~~~Dv~d~~~v~~~~~ 75 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQEL-------GSD-YVYELDVSKPEHFKSLAE 75 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhc-------CCc-eEEEecCCCHHHHHHHHH
Confidence 4578888874 342 3444555566 5888888754222333222211 112 45677887653
Q ss_pred ---CCCCcEEEEEccchhh----------cCChhhHHH-----------HHHHHHHcCCCCcEEEEEec
Q 023562 226 ---PETGRYDVIWVQWCIG----------HLTDDDFVS-----------FFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 226 ---~~~~~fDlV~~~~~l~----------~~~~~d~~~-----------~l~~~~r~LkpGG~lii~e~ 270 (280)
...+++|+++.+-.+. ..+.+++.. +.+.+...|+.+|.|++.-.
T Consensus 76 ~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS 144 (274)
T PRK08415 76 SLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSY 144 (274)
T ss_pred HHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEec
Confidence 1125789988774332 122233322 34556666777787776533
No 445
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.98 E-value=36 Score=30.33 Aligned_cols=99 Identities=14% Similarity=0.027 Sum_probs=51.8
Q ss_pred ccEEEeecCcc--HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcC-CCC-CCC----CCcceeEEEccCCCCCCCCCc
Q 023562 159 LVALDCGSGIG--RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE-NHM-APD----MHKATNFFCVPLQDFTPETGR 230 (280)
Q Consensus 159 ~~VLDlGcG~G--~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~-~~~-~~~----~~~~i~~~~~d~~~~~~~~~~ 230 (280)
.+|.=+|+|.- .++..++..++ .|+++|.++..++.+++.+... +.. ... ...++.+ ..+..+. -..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~---~~~ 79 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA---VSG 79 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH---hcc
Confidence 46888888853 34444555555 5999999999998887642110 000 000 0001111 1122111 135
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEE
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~l 265 (280)
.|+|+.+-.-. .+....++.++...++++.++
T Consensus 80 aDlVi~av~~~---~~~~~~v~~~l~~~~~~~~ii 111 (311)
T PRK06130 80 ADLVIEAVPEK---LELKRDVFARLDGLCDPDTIF 111 (311)
T ss_pred CCEEEEeccCc---HHHHHHHHHHHHHhCCCCcEE
Confidence 68887653210 013457888888877766544
No 446
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=54.81 E-value=1.3e+02 Score=27.28 Aligned_cols=96 Identities=16% Similarity=0.038 Sum_probs=54.0
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc------CCCCCC
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP------LQDFTP 226 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d------~~~~~~ 226 (280)
..++.+||=.|+| .|..+..+++. +..+|++++.++.-++.+++.-.. .. ++....+ +.++.
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~-~~--------i~~~~~~~~~~~~~~~~~- 251 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGAT-DF--------INPKDSDKPVSEVIREMT- 251 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCC-cE--------eccccccchHHHHHHHHh-
Confidence 4567788888764 23344444544 333699999999988888653211 00 1111000 11111
Q ss_pred CCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCC-cEEEEEe
Q 023562 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (280)
Q Consensus 227 ~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpG-G~lii~e 269 (280)
. +.+|+|+-.-. . ...+....+.|+++ |.+++.-
T Consensus 252 ~-~g~d~vid~~g--~------~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 252 G-GGVDYSFECTG--N------ADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred C-CCCCEEEECCC--C------hHHHHHHHHhcccCCCEEEEEc
Confidence 1 35888874321 0 14667778889886 9888753
No 447
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=54.80 E-value=39 Score=27.51 Aligned_cols=31 Identities=19% Similarity=0.083 Sum_probs=22.6
Q ss_pred cEEEeecCc-cH-HHHHHHHhcCCcEEEEeCCH
Q 023562 160 VALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVS 190 (280)
Q Consensus 160 ~VLDlGcG~-G~-~s~~l~~~~~~~v~~vD~S~ 190 (280)
+|+=+|||. |. ++..|+..+..+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 478899983 54 45556666887899999775
No 448
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=54.75 E-value=1e+02 Score=26.42 Aligned_cols=91 Identities=20% Similarity=0.177 Sum_probs=50.7
Q ss_pred CCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCC--CCCCCcE
Q 023562 156 NQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRY 231 (280)
Q Consensus 156 ~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~f 231 (280)
.++.+||=.|+ +.|..+..+++....+++.++.++ ..+.+++. .. ..++...-.++ ......+
T Consensus 143 ~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~~-g~-----------~~~~~~~~~~~~~~~~~~~~ 209 (309)
T cd05289 143 KAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRSL-GA-----------DEVIDYTKGDFERAAAPGGV 209 (309)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHHc-CC-----------CEEEeCCCCchhhccCCCCc
Confidence 35678888886 455566656655444687777666 66665432 11 01111111111 1222468
Q ss_pred EEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 232 DlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
|+++.+.. . ..+..+.+.|+++|.++..
T Consensus 210 d~v~~~~~-------~--~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 210 DAVLDTVG-------G--ETLARSLALVKPGGRLVSI 237 (309)
T ss_pred eEEEECCc-------h--HHHHHHHHHHhcCcEEEEE
Confidence 98875422 1 2566777889999998764
No 449
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=54.72 E-value=1.5e+02 Score=26.49 Aligned_cols=97 Identities=23% Similarity=0.122 Sum_probs=54.5
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccC----CCCCCCC
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~----~~~~~~~ 228 (280)
..++.+||=.|+| .|..+..+++. +...|.+++.++...+.+++.-.. .-++....++ .++ ...
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~---------~~i~~~~~~~~~~l~~~-~~~ 239 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGAT---------IVLDPTEVDVVAEVRKL-TGG 239 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC---------EEECCCccCHHHHHHHH-hCC
Confidence 3456788877753 23344444544 333689999999988888653211 0011111111 111 112
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
..+|+|+-+... ...+..+.+.|+++|.++..-
T Consensus 240 ~~~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 240 GGVDVSFDCAGV--------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCCEEEECCCC--------HHHHHHHHHhccCCCEEEEEc
Confidence 348998764321 135677888999999988753
No 450
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=54.52 E-value=47 Score=31.23 Aligned_cols=87 Identities=9% Similarity=-0.122 Sum_probs=49.8
Q ss_pred CCCccEEEeecCccHHHH-HHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSGIGRITK-NLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~-~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
..+.+|+=+|+|.=.... ..++....+|+++|.++.-...+... | . ...++++. . ...|+|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~----G---------~--~v~~leea-l--~~aDVV 254 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD----G---------F--RVMTMEEA-A--KIGDIF 254 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc----C---------C--EeCCHHHH-H--hcCCEE
Confidence 356799999999843333 23333333799999888654433321 1 1 11122221 1 246888
Q ss_pred EccchhhcCChhhHHHHHH-HHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFK-RAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~-~~~r~LkpGG~lii~ 268 (280)
++.-. -..++. .....+|+|++++..
T Consensus 255 ItaTG--------~~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 255 ITATG--------NKDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred EECCC--------CHHHHHHHHHhcCCCCcEEEEE
Confidence 76422 124454 478899999999875
No 451
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=54.41 E-value=1.3e+02 Score=26.28 Aligned_cols=95 Identities=16% Similarity=0.125 Sum_probs=53.7
Q ss_pred CCCCccEEEeecC--ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc----CCCCCCCC
Q 023562 155 NNQHLVALDCGSG--IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP----LQDFTPET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG--~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d----~~~~~~~~ 228 (280)
..++.+||-.|++ .|.....++.....++..++.++...+.++..... ..++....+ +... ...
T Consensus 164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~ 233 (342)
T cd08266 164 LRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGAD---------YVIDYRKEDFVREVREL-TGK 233 (342)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC---------eEEecCChHHHHHHHHH-hCC
Confidence 3455678888864 56666666655445699999888877776442110 001000000 0000 112
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
..+|+++.+.. . ..+..+.+.|+++|.++..
T Consensus 234 ~~~d~~i~~~g-------~--~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 234 RGVDVVVEHVG-------A--ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred CCCcEEEECCc-------H--HHHHHHHHHhhcCCEEEEE
Confidence 46888876532 1 2455667788999988865
No 452
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=54.21 E-value=98 Score=28.06 Aligned_cols=96 Identities=18% Similarity=0.060 Sum_probs=55.5
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc----CCCCCCCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP----LQDFTPET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d----~~~~~~~~ 228 (280)
..++.+||-.|+|. |..+..+++. +...+++++.++...+.+++.-... . +.....+ +.... .
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~-~--------i~~~~~~~~~~v~~~~--~ 252 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATH-V--------INPKEEDLVAAIREIT--G 252 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcE-E--------ecCCCcCHHHHHHHHh--C
Confidence 34567888887643 4555555554 4436999999998888776532110 0 0000001 11111 2
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
..+|+|+-+-. . . ..+..+.+.|+++|.++..-
T Consensus 253 ~~~d~vld~~g-----~-~--~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 253 GGVDYALDTTG-----V-P--AVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCCcEEEECCC-----C-c--HHHHHHHHHhccCCEEEEeC
Confidence 46898875421 0 1 35677888899999988754
No 453
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.00 E-value=81 Score=27.08 Aligned_cols=103 Identities=16% Similarity=-0.023 Sum_probs=51.8
Q ss_pred CccEEEeec-CccHH----HHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-------
Q 023562 158 HLVALDCGS-GIGRI----TKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (280)
Q Consensus 158 ~~~VLDlGc-G~G~~----s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (280)
+.++|=.|+ |++.+ +..|++.+. +|..++......+..++..... + ...++..|+.+..
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~Dv~d~~~v~~~~~ 76 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEF-------G-SDLVFPCDVASDEQIDALFA 76 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhc-------C-CcceeeccCCCHHHHHHHHH
Confidence 457888896 33333 444455565 4777654322222222221111 1 1234667776542
Q ss_pred ---CCCCcEEEEEccchhh-----------cCChhhHHHH-----------HHHHHHcCCCCcEEEEEe
Q 023562 226 ---PETGRYDVIWVQWCIG-----------HLTDDDFVSF-----------FKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 226 ---~~~~~fDlV~~~~~l~-----------~~~~~d~~~~-----------l~~~~r~LkpGG~lii~e 269 (280)
...+++|+++.+-.+. .++.+++... .+.+...|+.+|.|++.-
T Consensus 77 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~is 145 (260)
T PRK06997 77 SLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 145 (260)
T ss_pred HHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEe
Confidence 0125789988763321 2333444433 445666677777766653
No 454
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=53.73 E-value=36 Score=30.21 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=41.3
Q ss_pred CCccEEEeecCccHH---HHHHHHhcCCcEEEEeCCHHHHHHHHH---HcCcCCCCCCCCCcceeEEEccCCCCC---CC
Q 023562 157 QHLVALDCGSGIGRI---TKNLLIRYFNEVDLLEPVSHFLDAARE---SLAPENHMAPDMHKATNFFCVPLQDFT---PE 227 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~---s~~l~~~~~~~v~~vD~S~~~l~~A~~---~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~ 227 (280)
++.++|=+|+| |.- +..++..+..+|+.++.++...+.+++ .+... ...+.+...|+.+.. ..
T Consensus 125 ~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~-------~~~~~~~~~d~~~~~~~~~~ 196 (289)
T PRK12548 125 KGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE-------VPECIVNVYDLNDTEKLKAE 196 (289)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc-------CCCceeEEechhhhhHHHhh
Confidence 34678999986 422 222344566679999988532222222 22211 112233444544321 11
Q ss_pred CCcEEEEEccchhhcCC
Q 023562 228 TGRYDVIWVQWCIGHLT 244 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~~~ 244 (280)
-..+|+|+.+..+...+
T Consensus 197 ~~~~DilINaTp~Gm~~ 213 (289)
T PRK12548 197 IASSDILVNATLVGMKP 213 (289)
T ss_pred hccCCEEEEeCCCCCCC
Confidence 13579999877666543
No 455
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=53.59 E-value=1.5e+02 Score=25.97 Aligned_cols=91 Identities=16% Similarity=0.064 Sum_probs=51.9
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
..++.+||=.|||. |..+..+++....+|+.++.++...+.+++. .. +.. .+.... ....+|+
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~-g~------------~~~-~~~~~~--~~~~vD~ 228 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELAREL-GA------------DWA-GDSDDL--PPEPLDA 228 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-CC------------cEE-eccCcc--CCCcccE
Confidence 34566777776542 2233334444334799999888877777442 11 100 111111 1246888
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
++..... ...+..+.+.|+++|.++...
T Consensus 229 vi~~~~~--------~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 229 AIIFAPV--------GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EEEcCCc--------HHHHHHHHHHhhcCCEEEEEc
Confidence 7643210 146788899999999998754
No 456
>PRK09072 short chain dehydrogenase; Provisional
Probab=53.56 E-value=60 Score=27.70 Aligned_cols=73 Identities=16% Similarity=0.080 Sum_probs=46.5
Q ss_pred CccEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--------
Q 023562 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (280)
Q Consensus 158 ~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------- 226 (280)
+.++|=.|++.|. ++..+++++. +|.+++.++.-++.....+.. ..++.++.+|+.+...
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPY--------PGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhc--------CCceEEEEccCCCHHHHHHHHHHH
Confidence 3568888876542 4445566666 599999998877766554422 2357788888876431
Q ss_pred -CCCcEEEEEccch
Q 023562 227 -ETGRYDVIWVQWC 239 (280)
Q Consensus 227 -~~~~fDlV~~~~~ 239 (280)
..+..|.++.+-.
T Consensus 76 ~~~~~id~lv~~ag 89 (263)
T PRK09072 76 REMGGINVLINNAG 89 (263)
T ss_pred HhcCCCCEEEECCC
Confidence 0145788887643
No 457
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=53.54 E-value=33 Score=32.89 Aligned_cols=84 Identities=14% Similarity=0.012 Sum_probs=48.6
Q ss_pred CCccEEEeecCccHHHHHHHH---hcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEE
Q 023562 157 QHLVALDCGSGIGRITKNLLI---RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~---~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDl 233 (280)
.+.+|+=+|+|. ++..++. ....+|+++|.++.-...+... | . ...++.+.- ...|+
T Consensus 253 aGKtVgVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~----G---------~--~~~~leell---~~ADI 312 (476)
T PTZ00075 253 AGKTVVVCGYGD--VGKGCAQALRGFGARVVVTEIDPICALQAAME----G---------Y--QVVTLEDVV---ETADI 312 (476)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhc----C---------c--eeccHHHHH---hcCCE
Confidence 567999999987 4443333 2223799998887654333221 1 1 112222221 35799
Q ss_pred EEccchhhcCChhhHHHHH-HHHHHcCCCCcEEEEE
Q 023562 234 IWVQWCIGHLTDDDFVSFF-KRAKVGLKPGGFFVLK 268 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l-~~~~r~LkpGG~lii~ 268 (280)
|++.-.- ..++ .+....||||++++-.
T Consensus 313 VI~atGt--------~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 313 FVTATGN--------KDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred EEECCCc--------ccccCHHHHhccCCCcEEEEc
Confidence 9875221 1344 3677889999998764
No 458
>PRK07063 short chain dehydrogenase; Provisional
Probab=53.52 E-value=56 Score=27.80 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=47.0
Q ss_pred CccEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--------
Q 023562 158 HLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (280)
Q Consensus 158 ~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------- 226 (280)
++++|-.|++.| .++..|++++. +|.+++.++..++...+.+...+ ...++.++.+|+.+...
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDV-----AGARVLAVPADVTDAASVAAAVAAA 80 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcc-----CCceEEEEEccCCCHHHHHHHHHHH
Confidence 457888887654 23444555565 59999998887776665553310 03457788888876420
Q ss_pred --CCCcEEEEEccc
Q 023562 227 --ETGRYDVIWVQW 238 (280)
Q Consensus 227 --~~~~fDlV~~~~ 238 (280)
..+.+|.++.+-
T Consensus 81 ~~~~g~id~li~~a 94 (260)
T PRK07063 81 EEAFGPLDVLVNNA 94 (260)
T ss_pred HHHhCCCcEEEECC
Confidence 014689888663
No 459
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=53.19 E-value=43 Score=30.33 Aligned_cols=96 Identities=17% Similarity=0.084 Sum_probs=55.0
Q ss_pred CCCCccEEEeecC-ccHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc----CCCCCCCC
Q 023562 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP----LQDFTPET 228 (280)
Q Consensus 155 ~~~~~~VLDlGcG-~G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d----~~~~~~~~ 228 (280)
..++.+||-.|+| .|..+..+++.... .|++++.++...+.+++. ... .-+.....+ +..+. ..
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~-g~~--------~vv~~~~~~~~~~l~~~~-~~ 249 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRF-GAT--------HTVNASEDDAVEAVRDLT-DG 249 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHh-CCe--------EEeCCCCccHHHHHHHHc-CC
Confidence 3456788888774 45566666655444 499999888888777542 110 000000001 11111 12
Q ss_pred CcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 229 ~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
..+|+++..-.- ...+..+.+.|+++|.++..
T Consensus 250 ~~vd~vld~~~~--------~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 250 RGADYAFEAVGR--------AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred CCCCEEEEcCCC--------hHHHHHHHHHhhcCCeEEEE
Confidence 468988753220 14567788889999998865
No 460
>PRK07890 short chain dehydrogenase; Provisional
Probab=53.17 E-value=49 Score=27.99 Aligned_cols=73 Identities=16% Similarity=0.094 Sum_probs=45.7
Q ss_pred CccEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--------
Q 023562 158 HLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (280)
Q Consensus 158 ~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------- 226 (280)
+.+||=.|++.| .++..+++++. +|.+++.++.-++...+.+... ..++.++..|+.+...
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~ 76 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDL-------GRRALAVPTDITDEDQCANLVALA 76 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHh-------CCceEEEecCCCCHHHHHHHHHHH
Confidence 457887777555 23444555666 5999999887766655544321 2356788888876420
Q ss_pred --CCCcEEEEEccc
Q 023562 227 --ETGRYDVIWVQW 238 (280)
Q Consensus 227 --~~~~fDlV~~~~ 238 (280)
.-++.|+|+.+.
T Consensus 77 ~~~~g~~d~vi~~a 90 (258)
T PRK07890 77 LERFGRVDALVNNA 90 (258)
T ss_pred HHHcCCccEEEECC
Confidence 014679888764
No 461
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=53.08 E-value=53 Score=27.81 Aligned_cols=74 Identities=26% Similarity=0.196 Sum_probs=44.5
Q ss_pred CCccEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC--------
Q 023562 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (280)
Q Consensus 157 ~~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 225 (280)
++.++|-.|++.|. ++..+++++. +|.+++.+++.++...+.+... ..++.++.+|+.+..
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~ 81 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAA-------GGAAEALAFDIADEEAVAAAFAR 81 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhc-------CCceEEEEccCCCHHHHHHHHHH
Confidence 35678888865442 3333444565 6999999887766555444322 234677888887642
Q ss_pred --CCCCcEEEEEccc
Q 023562 226 --PETGRYDVIWVQW 238 (280)
Q Consensus 226 --~~~~~fDlV~~~~ 238 (280)
...+++|.++.+-
T Consensus 82 ~~~~~~~id~vi~~a 96 (256)
T PRK06124 82 IDAEHGRLDILVNNV 96 (256)
T ss_pred HHHhcCCCCEEEECC
Confidence 0114678888663
No 462
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=53.08 E-value=1.3e+02 Score=26.75 Aligned_cols=95 Identities=19% Similarity=0.103 Sum_probs=54.2
Q ss_pred CCccEEEeecCc-cHHHHHHHHhcCC-cEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc----CCCCCCCCCc
Q 023562 157 QHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP----LQDFTPETGR 230 (280)
Q Consensus 157 ~~~~VLDlGcG~-G~~s~~l~~~~~~-~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d----~~~~~~~~~~ 230 (280)
++.+||-.|+|. |..+..+++.... .|.+++.++.-.+.+++.-... -+.....+ +..+. ....
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~---------~~~~~~~~~~~~~~~~~-~~~~ 232 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATR---------AVNVAKEDLRDVMAELG-MTEG 232 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcE---------EecCccccHHHHHHHhc-CCCC
Confidence 456777777653 5555556655443 5888888888887776532110 00001111 11111 1246
Q ss_pred EEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 231 fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
+|+|+....- ...+..+.+.|+++|.++...
T Consensus 233 ~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 233 FDVGLEMSGA--------PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred CCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 8888763220 146777888999999998864
No 463
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=52.80 E-value=89 Score=28.95 Aligned_cols=105 Identities=10% Similarity=-0.069 Sum_probs=56.1
Q ss_pred CCCCccEEEeecCc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEE-ccC----CCCCCC
Q 023562 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPL----QDFTPE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~-G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~-~d~----~~~~~~ 227 (280)
..++.+||=.|+|. |..+..+++. +...+..+|.++.-++.+++.-.. .+.... .++ .+. ..
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~----------~v~~~~~~~~~~~v~~~-~~ 251 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCE----------TVDLSKDATLPEQIEQI-LG 251 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCe----------EEecCCcccHHHHHHHH-cC
Confidence 34566777776642 3344444544 444466778888888888774211 010000 011 111 11
Q ss_pred CCcEEEEEccchhh-c-----CChhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 228 TGRYDVIWVQWCIG-H-----LTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 228 ~~~fDlV~~~~~l~-~-----~~~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
...+|+|+-.-... + ....+....++.+.+++++||.+++.-.
T Consensus 252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 23589888542210 0 0001223478888999999999998543
No 464
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=52.76 E-value=40 Score=30.63 Aligned_cols=94 Identities=17% Similarity=0.092 Sum_probs=54.6
Q ss_pred HHHHHHHhccCCCccCCCC--ccEEEeecCccHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeE
Q 023562 140 AFLQMLLSDRFPNARNNQH--LVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (280)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~--~~VLDlGcG~G~~s~~l~~~~~-~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~ 216 (280)
.++.+++...- ..++ .+-+|||.|.-.+-..+-.+.+ -..+++|+.....+.|+.+...+++. ..+..
T Consensus 87 hwI~DLLss~q----~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls-----s~ikv 157 (419)
T KOG2912|consen 87 HWIEDLLSSQQ----SDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS-----SLIKV 157 (419)
T ss_pred HHHHHHhhccc----CCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccc-----cceee
Confidence 56666665431 2222 2358998887655443322222 25889999999999999999887663 33443
Q ss_pred EEccCCC------CC-CCCCcEEEEEccc-hhhc
Q 023562 217 FCVPLQD------FT-PETGRYDVIWVQW-CIGH 242 (280)
Q Consensus 217 ~~~d~~~------~~-~~~~~fDlV~~~~-~l~~ 242 (280)
+...... +. ..+..||++.|+- .+.+
T Consensus 158 V~~~~~ktll~d~~~~~~e~~ydFcMcNPPFfe~ 191 (419)
T KOG2912|consen 158 VKVEPQKTLLMDALKEESEIIYDFCMCNPPFFEN 191 (419)
T ss_pred EEecchhhcchhhhccCccceeeEEecCCchhhc
Confidence 3331111 11 1134699999883 3444
No 465
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=52.49 E-value=1.1e+02 Score=29.43 Aligned_cols=44 Identities=11% Similarity=-0.047 Sum_probs=34.0
Q ss_pred CCccEEEeecCccHHHHHHHHh--cC---CcEEEEeCCHHHHHHHHHHc
Q 023562 157 QHLVALDCGSGIGRITKNLLIR--YF---NEVDLLEPVSHFLDAARESL 200 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~l~~~--~~---~~v~~vD~S~~~l~~A~~~~ 200 (280)
+...|.|.-||+|.+....... +. ..+++.+..+.+...++.+.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm 265 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM 265 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence 4468999999999987654432 11 26999999999999998874
No 466
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=52.30 E-value=1e+02 Score=27.56 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=51.9
Q ss_pred cEEEeecCc-cHH-HHHHHHhcC-CcEEEEeCCHHHHH-HHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 160 VALDCGSGI-GRI-TKNLLIRYF-NEVDLLEPVSHFLD-AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 160 ~VLDlGcG~-G~~-s~~l~~~~~-~~v~~vD~S~~~l~-~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
+|.=+|+|. |.. +..++.++. ..+..+|.++...+ .+......... .........|.+++ ...|+|+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~-----~~~~~i~~~d~~~l----~~aDiVi 72 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPF-----VKPVRIYAGDYADC----KGADVVV 72 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccc-----cCCeEEeeCCHHHh----CCCCEEE
Confidence 477789876 332 233334443 47999999887655 23322211100 11123333443332 3568888
Q ss_pred ccchhhcCCh-----------hhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWCIGHLTD-----------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~~-----------~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
..-....-+. +-+..+.+++.+ ..|.|++++.-|
T Consensus 73 ita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~tN 117 (308)
T cd05292 73 ITAGANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVTN 117 (308)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecC
Confidence 7643322111 113455566655 458898888754
No 467
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=52.08 E-value=37 Score=29.91 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=26.8
Q ss_pred cEEEeecCc-c-HHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 023562 160 VALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (280)
Q Consensus 160 ~VLDlGcG~-G-~~s~~l~~~~~~~v~~vD~S~~~l~~A~~ 198 (280)
+|.=+|+|. | .++..+++.+. .|.+.|.++..++.+.+
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~ 43 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIA 43 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHH
Confidence 577788886 3 45666666565 59999999887766543
No 468
>PRK12742 oxidoreductase; Provisional
Probab=51.99 E-value=1.4e+02 Score=24.78 Aligned_cols=98 Identities=16% Similarity=0.141 Sum_probs=49.0
Q ss_pred CccEEEeecCcc--H-HHHHHHHhcCCcEEEEeC-CHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------CC
Q 023562 158 HLVALDCGSGIG--R-ITKNLLIRYFNEVDLLEP-VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (280)
Q Consensus 158 ~~~VLDlGcG~G--~-~s~~l~~~~~~~v~~vD~-S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~ 227 (280)
+.+||=.|++.| . ++..+++++. +|..+.. ++..++...... .+.++..|+.+.. ..
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~------------~~~~~~~D~~~~~~~~~~~~~ 72 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQET------------GATAVQTDSADRDAVIDVVRK 72 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHh------------CCeEEecCCCCHHHHHHHHHH
Confidence 457888877444 2 3333444455 4766643 444443332221 1345566665432 11
Q ss_pred CCcEEEEEccchhhc------CChhhHHH-----------HHHHHHHcCCCCcEEEEE
Q 023562 228 TGRYDVIWVQWCIGH------LTDDDFVS-----------FFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 228 ~~~fDlV~~~~~l~~------~~~~d~~~-----------~l~~~~r~LkpGG~lii~ 268 (280)
.+++|+++.+-.... .+.+++.. +++.+.+.++++|.+++.
T Consensus 73 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 130 (237)
T PRK12742 73 SGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIII 130 (237)
T ss_pred hCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 246898886633221 12223222 224556667777877765
No 469
>PRK07904 short chain dehydrogenase; Provisional
Probab=51.78 E-value=53 Score=28.12 Aligned_cols=77 Identities=18% Similarity=0.063 Sum_probs=45.2
Q ss_pred CCCccEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHH-HHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC------
Q 023562 156 NQHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHF-LDAARESLAPENHMAPDMHKATNFFCVPLQDFT------ 225 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~-l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------ 225 (280)
..+.+||-.||+.|. ++..+++++..+|.+++.++.- ++.+.+.+...+ ..++.++.+|+.+..
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~------~~~v~~~~~D~~~~~~~~~~~ 79 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG------ASSVEVIDFDALDTDSHPKVI 79 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC------CCceEEEEecCCChHHHHHHH
Confidence 456689999986552 2333444543468898877653 554444333211 135788888887643
Q ss_pred ---CCCCcEEEEEccc
Q 023562 226 ---PETGRYDVIWVQW 238 (280)
Q Consensus 226 ---~~~~~fDlV~~~~ 238 (280)
...+..|+++.+.
T Consensus 80 ~~~~~~g~id~li~~a 95 (253)
T PRK07904 80 DAAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHHhcCCCCEEEEee
Confidence 1114689887653
No 470
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=51.60 E-value=74 Score=27.26 Aligned_cols=104 Identities=21% Similarity=0.185 Sum_probs=52.0
Q ss_pred CccEEEeecC-ccHHHHH----HHHhcCCcEEEEeCCHH---HHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----
Q 023562 158 HLVALDCGSG-IGRITKN----LLIRYFNEVDLLEPVSH---FLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (280)
Q Consensus 158 ~~~VLDlGcG-~G~~s~~----l~~~~~~~v~~vD~S~~---~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 225 (280)
++.+|=.|++ ++.++.. +++.+. +|..+..+.. ..+.+++.... ...+.++..|+.+..
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~Dl~d~~~v~~ 76 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYLPDEKGRFEKKVRELTEP--------LNPSLFLPCDVQDDAQIEE 76 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEecCcccchHHHHHHHHHhc--------cCcceEeecCcCCHHHHHH
Confidence 4578999974 3444443 444455 4766643321 11222222111 112456777876642
Q ss_pred ------CCCCcEEEEEccchhh----------cCChhhHHH-----------HHHHHHHcCCCCcEEEEEec
Q 023562 226 ------PETGRYDVIWVQWCIG----------HLTDDDFVS-----------FFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 226 ------~~~~~fDlV~~~~~l~----------~~~~~d~~~-----------~l~~~~r~LkpGG~lii~e~ 270 (280)
...+++|+++.+-.+. .++.+++.. +.+.+...|+.+|.|++.-.
T Consensus 77 ~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS 148 (258)
T PRK07370 77 TFETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTY 148 (258)
T ss_pred HHHHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 0124789988764322 122233322 23556667777888776543
No 471
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=51.55 E-value=10 Score=34.66 Aligned_cols=112 Identities=11% Similarity=0.004 Sum_probs=73.1
Q ss_pred CCCCccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHH-------HHHcCcCCCCCCCCCcceeEEEccCCCCCCC
Q 023562 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA-------RESLAPENHMAPDMHKATNFFCVPLQDFTPE 227 (280)
Q Consensus 155 ~~~~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A-------~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 227 (280)
..++.-|.|-=.|||.+....+ +...-|.|.||+-.|+... +.+++..|. ...-+..+.+|...-+.-
T Consensus 206 v~pGdivyDPFVGTGslLvsaa-~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~----~~~fldvl~~D~sn~~~r 280 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAA-HFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGS----SSQFLDVLTADFSNPPLR 280 (421)
T ss_pred cCCCCEEecCccccCceeeehh-hhcceeeccccchheeecccCCCcchhHhHHHhCC----cchhhheeeecccCcchh
Confidence 4577889999999999988665 4344699999998888732 334443321 123356667777665422
Q ss_pred -CCcEEEEEccch------------------------hhcCChh-------hHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 228 -TGRYDVIWVQWC------------------------IGHLTDD-------DFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 228 -~~~fDlV~~~~~------------------------l~~~~~~-------d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
...||.|+|--- ..|++.. -+...|.-.++.|..||.+++--+.
T Consensus 281 sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~ 356 (421)
T KOG2671|consen 281 SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPT 356 (421)
T ss_pred hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCc
Confidence 358999996411 1122221 1346777788999999999986553
No 472
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=51.32 E-value=23 Score=28.36 Aligned_cols=89 Identities=19% Similarity=0.166 Sum_probs=48.4
Q ss_pred cEEEeecCcc--HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 160 VALDCGSGIG--RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 160 ~VLDlGcG~G--~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
+|-=+|+|.= .++..|++.++ .|++.|.+++..+...+.-. . ...+..+.. ...|+|+++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~-------------~-~~~s~~e~~---~~~dvvi~~ 64 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGA-------------E-VADSPAEAA---EQADVVILC 64 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTE-------------E-EESSHHHHH---HHBSEEEE-
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhh-------------h-hhhhhhhHh---hcccceEee
Confidence 4555666542 23444555566 59999999888776654321 1 222222221 245888765
Q ss_pred chhhcCChhhHHHHHHH--HHHcCCCCcEEEEEec
Q 023562 238 WCIGHLTDDDFVSFFKR--AKVGLKPGGFFVLKEN 270 (280)
Q Consensus 238 ~~l~~~~~~d~~~~l~~--~~r~LkpGG~lii~e~ 270 (280)
-. +++....++.. +...|++|.+++-..+
T Consensus 65 v~----~~~~v~~v~~~~~i~~~l~~g~iiid~sT 95 (163)
T PF03446_consen 65 VP----DDDAVEAVLFGENILAGLRPGKIIIDMST 95 (163)
T ss_dssp SS----SHHHHHHHHHCTTHGGGS-TTEEEEE-SS
T ss_pred cc----cchhhhhhhhhhHHhhccccceEEEecCC
Confidence 33 12355677777 7888888877765433
No 473
>PRK06172 short chain dehydrogenase; Provisional
Probab=50.44 E-value=59 Score=27.46 Aligned_cols=74 Identities=14% Similarity=0.017 Sum_probs=45.5
Q ss_pred CccEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-C-------
Q 023562 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-P------- 226 (280)
Q Consensus 158 ~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~------- 226 (280)
+.++|-.|++.|. ++..|++++. +|.+++-++.-++...+.+... ..++.++.+|+.+.. .
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~i~~~~~~~ 78 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREA-------GGEALFVACDVTRDAEVKALVEQT 78 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhc-------CCceEEEEcCCCCHHHHHHHHHHH
Confidence 4578888875442 3334454555 5999999887766555544321 245778888887642 0
Q ss_pred --CCCcEEEEEccch
Q 023562 227 --ETGRYDVIWVQWC 239 (280)
Q Consensus 227 --~~~~fDlV~~~~~ 239 (280)
..+++|+|+.+..
T Consensus 79 ~~~~g~id~li~~ag 93 (253)
T PRK06172 79 IAAYGRLDYAFNNAG 93 (253)
T ss_pred HHHhCCCCEEEECCC
Confidence 0136799987643
No 474
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=50.33 E-value=1.7e+02 Score=25.50 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=55.8
Q ss_pred CCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc-CC-CC--CCCCC
Q 023562 156 NQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQ-DF--TPETG 229 (280)
Q Consensus 156 ~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d-~~-~~--~~~~~ 229 (280)
.++.+||=.|+ +.|..+..+++.....+..+..++...+.+++ +... .-+.....+ +. .+ .....
T Consensus 139 ~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~--------~~~~~~~~~~~~~~~~~~~~~~ 209 (334)
T PTZ00354 139 KKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK-LAAI--------ILIRYPDEEGFAPKVKKLTGEK 209 (334)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCc--------EEEecCChhHHHHHHHHHhCCC
Confidence 45667887774 57777777776655456778888888888854 2210 001111111 00 00 01124
Q ss_pred cEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 230 ~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.+|+++.+.. . ..+..+.+.|+++|.++..
T Consensus 210 ~~d~~i~~~~-------~--~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 210 GVNLVLDCVG-------G--SYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred CceEEEECCc-------h--HHHHHHHHHhccCCeEEEE
Confidence 6899985432 1 4667788889999998864
No 475
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=50.17 E-value=1.8e+02 Score=26.53 Aligned_cols=44 Identities=14% Similarity=0.029 Sum_probs=32.4
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHH
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~ 198 (280)
..++.+||=.|+ +.|..+..+++.....+..++.++...+.+++
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 345678988886 55666666666654468888999999988876
No 476
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=50.16 E-value=15 Score=28.44 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=33.1
Q ss_pred cceeEEEccCCCC-CCCCCcEEEEEccchhhcCChhhH-HHHHHHHHHcCCCCcEEEE
Q 023562 212 KATNFFCVPLQDF-TPETGRYDVIWVQWCIGHLTDDDF-VSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 212 ~~i~~~~~d~~~~-~~~~~~fDlV~~~~~l~~~~~~d~-~~~l~~~~r~LkpGG~lii 267 (280)
..+++..+|+.+. +.-...||+|+.-..--.-.++-+ ..+++.++++++|||.+.-
T Consensus 31 v~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp EEEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 4566777777543 211268999987632111111112 5899999999999998764
No 477
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.95 E-value=1.4e+02 Score=25.44 Aligned_cols=100 Identities=14% Similarity=-0.015 Sum_probs=54.7
Q ss_pred CccEEEeecC-ccHHHH----HHHHhcCCcEEEEeCCH--HHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----
Q 023562 158 HLVALDCGSG-IGRITK----NLLIRYFNEVDLLEPVS--HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----- 225 (280)
Q Consensus 158 ~~~VLDlGcG-~G~~s~----~l~~~~~~~v~~vD~S~--~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----- 225 (280)
+.++|-.|+| ++.++. .|++++. +|..++.+. +.++...+.+. .++.++..|+.+..
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~----------~~~~~~~~Dv~~~~~i~~~ 75 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKRLP----------EPAPVLELDVTNEEHLASL 75 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHhcC----------CCCcEEeCCCCCHHHHHHH
Confidence 4578999983 333333 3444455 588887653 44444433321 23557778887642
Q ss_pred -----CCCCcEEEEEccchhhc-------C---ChhhHH-----------HHHHHHHHcCCCCcEEEEE
Q 023562 226 -----PETGRYDVIWVQWCIGH-------L---TDDDFV-----------SFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 226 -----~~~~~fDlV~~~~~l~~-------~---~~~d~~-----------~~l~~~~r~LkpGG~lii~ 268 (280)
...+++|+++.+-.+.. + +.+++. .+.+.+...|+++|.+++.
T Consensus 76 ~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~i 144 (256)
T PRK07889 76 ADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGL 144 (256)
T ss_pred HHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEE
Confidence 01257899887643321 1 112221 2345566677788877654
No 478
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=49.81 E-value=58 Score=27.77 Aligned_cols=70 Identities=19% Similarity=0.073 Sum_probs=44.7
Q ss_pred cEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----------C
Q 023562 160 VALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----------P 226 (280)
Q Consensus 160 ~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----------~ 226 (280)
++|=.|++.|. ++..|+++++ +|.+++.++..++.+.+.+... .++.++.+|+.+.. .
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~--------~~~~~~~~Dv~d~~~~~~~~~~~~~ 72 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEY--------GEVYAVKADLSDKDDLKNLVKEAWE 72 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhc--------CCceEEEcCCCCHHHHHHHHHHHHH
Confidence 57777776552 3445555666 5999999988877766655431 24667888886532 0
Q ss_pred CCCcEEEEEccc
Q 023562 227 ETGRYDVIWVQW 238 (280)
Q Consensus 227 ~~~~fDlV~~~~ 238 (280)
..++.|+++.+-
T Consensus 73 ~~g~id~li~na 84 (259)
T PRK08340 73 LLGGIDALVWNA 84 (259)
T ss_pred hcCCCCEEEECC
Confidence 124689988663
No 479
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=49.50 E-value=58 Score=30.80 Aligned_cols=86 Identities=12% Similarity=-0.035 Sum_probs=49.3
Q ss_pred CCccEEEeecCccHHHH-HHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEE
Q 023562 157 QHLVALDCGSGIGRITK-NLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~-~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~ 235 (280)
.+.+|+=+|+|.=.... ..++....+|+.+|.++.-...+... | .. ..++.+.. ..+|+|+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~----G---------~~--v~~l~eal---~~aDVVI 272 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD----G---------FR--VMTMEEAA---ELGDIFV 272 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc----C---------CE--ecCHHHHH---hCCCEEE
Confidence 56799999998633222 12222223799999988655443321 1 11 11222211 3579987
Q ss_pred ccchhhcCChhhHHHHHH-HHHHcCCCCcEEEEE
Q 023562 236 VQWCIGHLTDDDFVSFFK-RAKVGLKPGGFFVLK 268 (280)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~-~~~r~LkpGG~lii~ 268 (280)
..-. . ..++. .....+|+|++++..
T Consensus 273 ~aTG-------~-~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 273 TATG-------N-KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred ECCC-------C-HHHHHHHHHhcCCCCCEEEEc
Confidence 6532 1 13554 678899999998775
No 480
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=49.42 E-value=66 Score=28.28 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=27.6
Q ss_pred CCccEEEeecCccHHHHH----HHHhcCCcEEEEeCCHHHHHHHHHHc
Q 023562 157 QHLVALDCGSGIGRITKN----LLIRYFNEVDLLEPVSHFLDAARESL 200 (280)
Q Consensus 157 ~~~~VLDlGcG~G~~s~~----l~~~~~~~v~~vD~S~~~l~~A~~~~ 200 (280)
.+.+||=+|+| ..+.. |...+..+|+.++.+.+-.+...+.+
T Consensus 122 ~~k~vlVlGaG--g~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~ 167 (278)
T PRK00258 122 KGKRILILGAG--GAARAVILPLLDLGVAEITIVNRTVERAEELAKLF 167 (278)
T ss_pred CCCEEEEEcCc--HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 45689999985 33333 33446567999999987666555544
No 481
>PRK07454 short chain dehydrogenase; Provisional
Probab=49.39 E-value=75 Score=26.57 Aligned_cols=73 Identities=18% Similarity=0.134 Sum_probs=44.6
Q ss_pred CccEEEeecCccHHHH----HHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-----C-
Q 023562 158 HLVALDCGSGIGRITK----NLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-----E- 227 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~----~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-----~- 227 (280)
..++|-.|+ +|.++. .+++++. +|.+++.++.-++...+..... ..++.++.+|+.+... .
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRST-------GVKAAAYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhC-------CCcEEEEEccCCCHHHHHHHHHH
Confidence 457888885 444444 4444555 6999999887665554443321 2357788889876530 0
Q ss_pred ----CCcEEEEEccch
Q 023562 228 ----TGRYDVIWVQWC 239 (280)
Q Consensus 228 ----~~~fDlV~~~~~ 239 (280)
.++.|+++.+-.
T Consensus 77 ~~~~~~~id~lv~~ag 92 (241)
T PRK07454 77 LLEQFGCPDVLINNAG 92 (241)
T ss_pred HHHHcCCCCEEEECCC
Confidence 135788886643
No 482
>PRK08655 prephenate dehydrogenase; Provisional
Probab=49.24 E-value=50 Score=31.26 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=45.2
Q ss_pred cEEEee-cC-ccH-HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEc
Q 023562 160 VALDCG-SG-IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (280)
Q Consensus 160 ~VLDlG-cG-~G~-~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~ 236 (280)
+|.=+| +| .|. ++..+.+.+. .|+++|.++........... +. ...+..+. -...|+|+.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~~~~~~~a~~~g------------v~-~~~~~~e~---~~~aDvVIl 64 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDPKKGKEVAKELG------------VE-YANDNIDA---AKDADIVII 64 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHcC------------Ce-eccCHHHH---hccCCEEEE
Confidence 466676 44 443 3444444454 59999998776532222111 11 11111111 134688876
Q ss_pred cchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
+-.. +....+++++...++||..++-
T Consensus 65 avp~-----~~~~~vl~~l~~~l~~~~iViD 90 (437)
T PRK08655 65 SVPI-----NVTEDVIKEVAPHVKEGSLLMD 90 (437)
T ss_pred ecCH-----HHHHHHHHHHHhhCCCCCEEEE
Confidence 5433 2345677888888888775543
No 483
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=49.23 E-value=91 Score=30.74 Aligned_cols=81 Identities=11% Similarity=0.056 Sum_probs=44.6
Q ss_pred CCCccEEEeecCccHHHHHHH----HhcCCcEEEEeCCHHHHHHHHHHcCcCCCC--CCCCCcceeEEEccCCCCCC---
Q 023562 156 NQHLVALDCGSGIGRITKNLL----IRYFNEVDLLEPVSHFLDAARESLAPENHM--APDMHKATNFFCVPLQDFTP--- 226 (280)
Q Consensus 156 ~~~~~VLDlGcG~G~~s~~l~----~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~--~~~~~~~i~~~~~d~~~~~~--- 226 (280)
+.+..||-.|+ +|.++..++ ++++ +|.+++.+..-++...+.+....+. ......++.++.+|+.+...
T Consensus 78 ~~gKvVLVTGA-TGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 78 KDEDLAFVAGA-TGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 34556777776 455555443 4455 5999988877665444332211000 00001357888899887431
Q ss_pred CCCcEEEEEccc
Q 023562 227 ETGRYDVIWVQW 238 (280)
Q Consensus 227 ~~~~fDlV~~~~ 238 (280)
.-+..|+||++.
T Consensus 156 aLggiDiVVn~A 167 (576)
T PLN03209 156 ALGNASVVICCI 167 (576)
T ss_pred HhcCCCEEEEcc
Confidence 114679888764
No 484
>PRK07677 short chain dehydrogenase; Provisional
Probab=48.64 E-value=63 Score=27.36 Aligned_cols=72 Identities=14% Similarity=0.084 Sum_probs=43.9
Q ss_pred ccEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-C--------
Q 023562 159 LVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-P-------- 226 (280)
Q Consensus 159 ~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~-------- 226 (280)
+++|-.|++.| .++..+++++. +|.+++.++..++...+.+... ..++.++.+|+.+.. .
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~ 73 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQF-------PGQVLTVQMDVRNPEDVQKMVEQID 73 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc-------CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 36777777555 23444455555 6999998887776665544321 235778888886532 0
Q ss_pred -CCCcEEEEEccc
Q 023562 227 -ETGRYDVIWVQW 238 (280)
Q Consensus 227 -~~~~fDlV~~~~ 238 (280)
.-++.|.++.+.
T Consensus 74 ~~~~~id~lI~~a 86 (252)
T PRK07677 74 EKFGRIDALINNA 86 (252)
T ss_pred HHhCCccEEEECC
Confidence 013679988653
No 485
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=48.59 E-value=50 Score=25.74 Aligned_cols=73 Identities=19% Similarity=0.123 Sum_probs=46.5
Q ss_pred cEEEeecCcc---HHHHHHHHhcCCcEEEEeCC--HHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---------
Q 023562 160 VALDCGSGIG---RITKNLLIRYFNEVDLLEPV--SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--------- 225 (280)
Q Consensus 160 ~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S--~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------- 225 (280)
.+|=.|++.| .++..+++++...|..+..+ ...++.....+... ..++.+...|+.+..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~-------~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP-------GAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT-------TSEEEEEESETTSHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc-------cccccccccccccccccccccccc
Confidence 4677777766 34555666656578888888 55555554444322 356888998887642
Q ss_pred -CCCCcEEEEEccch
Q 023562 226 -PETGRYDVIWVQWC 239 (280)
Q Consensus 226 -~~~~~fDlV~~~~~ 239 (280)
...+++|+++.+..
T Consensus 75 ~~~~~~ld~li~~ag 89 (167)
T PF00106_consen 75 IKRFGPLDILINNAG 89 (167)
T ss_dssp HHHHSSESEEEEECS
T ss_pred ccccccccccccccc
Confidence 11257999997633
No 486
>PRK07024 short chain dehydrogenase; Provisional
Probab=48.47 E-value=80 Score=26.85 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=44.3
Q ss_pred ccEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC----------
Q 023562 159 LVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------- 225 (280)
Q Consensus 159 ~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------- 225 (280)
.+||=.|+..| .++..|++++. +|.+++.+++.++...+.+... .++.++.+|+.+..
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~i~~~~~~~~ 73 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKA--------ARVSVYAADVRDADALAAAAADFI 73 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccC--------CeeEEEEcCCCCHHHHHHHHHHHH
Confidence 46777776444 23344455555 6999999888776655544321 15788888887642
Q ss_pred CCCCcEEEEEccch
Q 023562 226 PETGRYDVIWVQWC 239 (280)
Q Consensus 226 ~~~~~fDlV~~~~~ 239 (280)
...+..|+++.+..
T Consensus 74 ~~~g~id~lv~~ag 87 (257)
T PRK07024 74 AAHGLPDVVIANAG 87 (257)
T ss_pred HhCCCCCEEEECCC
Confidence 01135799987643
No 487
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=48.45 E-value=51 Score=30.07 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=24.2
Q ss_pred CccEEEeecCc-c-HHHHHHHHhcCCcEEEEeCC
Q 023562 158 HLVALDCGSGI-G-RITKNLLIRYFNEVDLLEPV 189 (280)
Q Consensus 158 ~~~VLDlGcG~-G-~~s~~l~~~~~~~v~~vD~S 189 (280)
..+||=+|||. | .++..|+..|..+++.+|.+
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 36899999983 4 34556666788789999976
No 488
>PLN02712 arogenate dehydrogenase
Probab=48.39 E-value=74 Score=31.97 Aligned_cols=86 Identities=22% Similarity=0.127 Sum_probs=47.3
Q ss_pred CCccEEEeecCc--cHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 157 QHLVALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 157 ~~~~VLDlGcG~--G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
+..+|.=||+|. |.++..+.+.+. +|.++|.+... +.+++. + +.+ ..+..++. ....|+|
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~-~~A~~~-----------G--v~~-~~d~~e~~--~~~aDvV 112 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGH-TVLAHSRSDHS-LAARSL-----------G--VSF-FLDPHDLC--ERHPDVI 112 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHH-HHHHHc-----------C--CEE-eCCHHHHh--hcCCCEE
Confidence 446899999875 345555555554 59999988543 333321 1 111 22222211 1236888
Q ss_pred EccchhhcCChhhHHHHHHHHH-HcCCCCcEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAK-VGLKPGGFF 265 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~-r~LkpGG~l 265 (280)
+.+-- +.....++..+. ..++||.+|
T Consensus 113 iLavP-----~~~~~~vl~~l~~~~l~~g~iV 139 (667)
T PLN02712 113 LLCTS-----IISTENVLKSLPLQRLKRNTLF 139 (667)
T ss_pred EEcCC-----HHHHHHHHHhhhhhcCCCCeEE
Confidence 76533 335566777765 567777643
No 489
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.72 E-value=99 Score=29.02 Aligned_cols=105 Identities=13% Similarity=0.164 Sum_probs=65.3
Q ss_pred CccEEEeec-Ccc------HHHHHHHHhcCC-cEEEEe-CCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---
Q 023562 158 HLVALDCGS-GIG------RITKNLLIRYFN-EVDLLE-PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--- 225 (280)
Q Consensus 158 ~~~VLDlGc-G~G------~~s~~l~~~~~~-~v~~vD-~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--- 225 (280)
+..|+=+|- |.| -++.++-++++. .+.+-| +-+.+.++.+++.... .+.|+..--+.-|
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~---------~iP~ygsyte~dpv~i 171 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKA---------RVPFYGSYTEADPVKI 171 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhh---------CCeeEecccccchHHH
Confidence 445555653 333 244445555665 455555 6677888888877653 3444443111111
Q ss_pred -------CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 023562 226 -------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (280)
Q Consensus 226 -------~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e~~ 271 (280)
+-.+.||+|++-.+=.|-.+..+-.-+..+.+.++|+-++++.|-.
T Consensus 172 a~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas 224 (483)
T KOG0780|consen 172 ASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS 224 (483)
T ss_pred HHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 2236899999986655655556666777889999999999887654
No 490
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=47.68 E-value=91 Score=27.38 Aligned_cols=86 Identities=12% Similarity=0.098 Sum_probs=49.9
Q ss_pred cEEEeecCcc--HHHHHHHHhcC---CcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 160 VALDCGSGIG--RITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 160 ~VLDlGcG~G--~~s~~l~~~~~---~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
+|.=||||.= .++..|.+.+. .+|.+.|.++.-++.+.+... +. ...+..+.. ...|+|
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g------------~~-~~~~~~e~~---~~aDiI 67 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG------------IT-ITTNNNEVA---NSADIL 67 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC------------cE-EeCCcHHHH---hhCCEE
Confidence 5777888753 23344444442 269999999887776554321 11 112222221 245888
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii 267 (280)
+.+-- +..+..+++.+...++++- +++
T Consensus 68 iLavk-----P~~~~~vl~~l~~~~~~~~-lvI 94 (272)
T PRK12491 68 ILSIK-----PDLYSSVINQIKDQIKNDV-IVV 94 (272)
T ss_pred EEEeC-----hHHHHHHHHHHHHhhcCCc-EEE
Confidence 76533 4567788888888887653 444
No 491
>PRK05876 short chain dehydrogenase; Provisional
Probab=47.59 E-value=71 Score=27.75 Aligned_cols=74 Identities=18% Similarity=0.026 Sum_probs=44.9
Q ss_pred CccEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC--------
Q 023562 158 HLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (280)
Q Consensus 158 ~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------- 226 (280)
+.++|-.|++.| .++..|++++. +|.+++.++.-++...+.+... +.++.++.+|+.+...
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~-------~~~~~~~~~Dv~d~~~v~~~~~~~ 77 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAE-------GFDVHGVMCDVRHREEVTHLADEA 77 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 356787777655 23344455565 5999998887776655444322 2346778888876420
Q ss_pred --CCCcEEEEEccch
Q 023562 227 --ETGRYDVIWVQWC 239 (280)
Q Consensus 227 --~~~~fDlV~~~~~ 239 (280)
..++.|+++.+-.
T Consensus 78 ~~~~g~id~li~nAg 92 (275)
T PRK05876 78 FRLLGHVDVVFSNAG 92 (275)
T ss_pred HHHcCCCCEEEECCC
Confidence 0135798887643
No 492
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=47.57 E-value=65 Score=29.62 Aligned_cols=93 Identities=16% Similarity=0.009 Sum_probs=49.7
Q ss_pred CCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHH-HHHHHHHcCcCCCCCCCCCcceeEEE-ccCCCCCCCCCcEEE
Q 023562 157 QHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHF-LDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDV 233 (280)
Q Consensus 157 ~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~-l~~A~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fDl 233 (280)
++.+||-.|+| .|..+..+++....+|++++.++.. .+.+++.-.. .-++... ..+.+.. +.+|+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~---------~~i~~~~~~~v~~~~---~~~D~ 245 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGAD---------SFLVTTDSQKMKEAV---GTMDF 245 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCc---------EEEcCcCHHHHHHhh---CCCcE
Confidence 56788888774 2344455555544468888877544 4555432111 0000000 0011111 24788
Q ss_pred EEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 023562 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (280)
Q Consensus 234 V~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~e 269 (280)
|+-.-. . . ..+..+.+.+++||.++..-
T Consensus 246 vid~~G-----~-~--~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 246 IIDTVS-----A-E--HALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred EEECCC-----c-H--HHHHHHHHhhcCCCEEEEEc
Confidence 875422 0 1 35677788999999998764
No 493
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=47.57 E-value=27 Score=28.02 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=47.0
Q ss_pred CccEEEeecCccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEEEcc
Q 023562 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (280)
Q Consensus 158 ~~~VLDlGcG~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV~~~ 237 (280)
+.+||=+|.=.-.+...|..... +++....+-.... .... ..++.+..+ .-.+....||.|+..
T Consensus 13 ~k~vL~~g~~~D~~~~~L~~~~~-~v~~~~~~~~~~~-~~~~-----------~~~~~~~f~---~~~~~~~~~D~vvly 76 (155)
T PF08468_consen 13 GKSVLFAGDPQDDLPAQLPAIAV-SVHVFSYHHWYAL-QKQA-----------QSNVQFHFG---AELPADQDFDTVVLY 76 (155)
T ss_dssp T-EEEEEE---SSHHHHS--SEE-EEEESBHHHHHHH-HHHH-----------GGGEEE-SS-----HHHHTT-SEEEEE
T ss_pred CCeEEEEcCCchhhHHHhhhcCC-EEEEEEchHHHHH-hHhc-----------ccCceEeee---ccCCcccCCCEEEEE
Confidence 45688888777767666654432 3555542221111 1111 122333321 111112569999876
Q ss_pred chhhcCChhhHHHHHHHHHHcCCCCcEEEEE-eccC
Q 023562 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK-ENIA 272 (280)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~-e~~~ 272 (280)
+.=. .++..-.|..+...|++||.|+++ ||-+
T Consensus 77 ~PKa---K~e~~~lL~~l~~~L~~g~~i~vVGEnk~ 109 (155)
T PF08468_consen 77 WPKA---KAEAQYLLANLLSHLPPGTEIFVVGENKG 109 (155)
T ss_dssp --SS---HHHHHHHHHHHHTTS-TT-EEEEEEEGGG
T ss_pred ccCc---HHHHHHHHHHHHHhCCCCCEEEEEecCcc
Confidence 5421 245677999999999999999887 7754
No 494
>PRK08862 short chain dehydrogenase; Provisional
Probab=47.52 E-value=68 Score=27.03 Aligned_cols=73 Identities=14% Similarity=0.017 Sum_probs=47.0
Q ss_pred CccEEEeecCccH---HHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-C-------
Q 023562 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-P------- 226 (280)
Q Consensus 158 ~~~VLDlGcG~G~---~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~------- 226 (280)
+..+|=.|++.|. ++..|++++. +|.+++.++..++...+.+... ...+..+..|+.+.. .
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~-------~~~~~~~~~D~~~~~~~~~~~~~~ 76 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSAL-------TDNVYSFQLKDFSQESIRHLFDAI 76 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhc-------CCCeEEEEccCCCHHHHHHHHHHH
Confidence 4578888988874 5556666676 4999999988887766554332 223455666665532 0
Q ss_pred --CCC-cEEEEEccc
Q 023562 227 --ETG-RYDVIWVQW 238 (280)
Q Consensus 227 --~~~-~fDlV~~~~ 238 (280)
.-+ .+|+++.+.
T Consensus 77 ~~~~g~~iD~li~na 91 (227)
T PRK08862 77 EQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHhCCCCCEEEECC
Confidence 013 789888764
No 495
>PRK06223 malate dehydrogenase; Reviewed
Probab=47.44 E-value=1e+02 Score=27.32 Aligned_cols=104 Identities=15% Similarity=0.083 Sum_probs=52.9
Q ss_pred ccEEEeecCc-cHHHHHHHHh-cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEE-ccCCCCCCCCCcEEEEE
Q 023562 159 LVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDVIW 235 (280)
Q Consensus 159 ~~VLDlGcG~-G~~s~~l~~~-~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fDlV~ 235 (280)
.+|.=+|+|. |......+.. +...|..+|++++.++....-+..... ......++.. .|.+++ ...|+|+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~---~~~~~~~i~~~~d~~~~----~~aDiVi 75 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAP---VEGFDTKITGTNDYEDI----AGSDVVV 75 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhh---hcCCCcEEEeCCCHHHH----CCCCEEE
Confidence 4788899988 6554444433 322799999988765321111111100 0011223322 333332 2458888
Q ss_pred ccchhhcCC-----------hhhHHHHHHHHHHcCCCCcEEEEEec
Q 023562 236 VQWCIGHLT-----------DDDFVSFFKRAKVGLKPGGFFVLKEN 270 (280)
Q Consensus 236 ~~~~l~~~~-----------~~d~~~~l~~~~r~LkpGG~lii~e~ 270 (280)
.......-+ -+-...+++.+.+.. |.+++++..|
T Consensus 76 i~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tN 120 (307)
T PRK06223 76 ITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTN 120 (307)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 653211100 023466777777766 7787777655
No 496
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=47.33 E-value=1.3e+02 Score=26.79 Aligned_cols=94 Identities=17% Similarity=0.081 Sum_probs=51.1
Q ss_pred CCCccEEEeecC-ccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCCCCCcEEEE
Q 023562 156 NQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (280)
Q Consensus 156 ~~~~~VLDlGcG-~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fDlV 234 (280)
.++.+||=.||| .|..+..+++.....+..++.++...+.+++.- .... +.....+.. ....+.+|+|
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g-~~~v--------i~~~~~~~~--~~~~~~~d~v 236 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLG-ADEF--------IATKDPEAM--KKAAGSLDLI 236 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcC-CcEE--------ecCcchhhh--hhccCCceEE
Confidence 455667667662 334444444443336999999988888875422 1100 000000100 0012568888
Q ss_pred EccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 235 ~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
+....- . ..+..+.+.|+++|.++..
T Consensus 237 ~~~~g~------~--~~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 237 IDTVSA------S--HDLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred EECCCC------c--chHHHHHHHhcCCCEEEEE
Confidence 743221 1 2466678888999988875
No 497
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=47.31 E-value=51 Score=28.41 Aligned_cols=92 Identities=14% Similarity=0.107 Sum_probs=55.6
Q ss_pred CCCCccEEEeec--CccHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEcc-------CCCCC
Q 023562 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-------LQDFT 225 (280)
Q Consensus 155 ~~~~~~VLDlGc--G~G~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d-------~~~~~ 225 (280)
..++.+||=.|+ +.|..+..+++.....+++++.++...+.+++. ... .++... +..+
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~-----------~~~~~~~~~~~~~~~~~- 200 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAA-GAD-----------HVINYRDEDFVERVREI- 200 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHC-CCC-----------EEEeCCchhHHHHHHHH-
Confidence 345678888884 466666667666555699999888888877542 110 111111 1111
Q ss_pred CCCCcEEEEEccchhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 023562 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (280)
Q Consensus 226 ~~~~~fDlV~~~~~l~~~~~~d~~~~l~~~~r~LkpGG~lii~ 268 (280)
.....+|+|+.+.. . ..+..+.+.|+++|.++..
T Consensus 201 ~~~~~~d~vl~~~~-------~--~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 201 TGGRGVDVVYDGVG-------K--DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred cCCCCeeEEEECCC-------c--HhHHHHHHhhccCcEEEEE
Confidence 11246999985422 1 2455677889999988865
No 498
>PRK06940 short chain dehydrogenase; Provisional
Probab=47.27 E-value=1.6e+02 Score=25.38 Aligned_cols=70 Identities=19% Similarity=0.061 Sum_probs=41.0
Q ss_pred cEEEeecCccHHHHHHHHh---cCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC---------CC
Q 023562 160 VALDCGSGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------PE 227 (280)
Q Consensus 160 ~VLDlGcG~G~~s~~l~~~---~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------~~ 227 (280)
.+|=-|+ |.++..+++. +. +|.+++.++.-++...+.+... +.++.++.+|+.+.. ..
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~-~Vv~~~r~~~~~~~~~~~l~~~-------~~~~~~~~~Dv~d~~~i~~~~~~~~~ 73 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGK-KVLLADYNEENLEAAAKTLREA-------GFDVSTQEVDVSSRESVKALAATAQT 73 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEEeecCCHHHHHHHHHHHHh
Confidence 3454454 3455555543 33 6999998877666555444321 235677888887642 01
Q ss_pred CCcEEEEEccch
Q 023562 228 TGRYDVIWVQWC 239 (280)
Q Consensus 228 ~~~fDlV~~~~~ 239 (280)
.+.+|+++.+-.
T Consensus 74 ~g~id~li~nAG 85 (275)
T PRK06940 74 LGPVTGLVHTAG 85 (275)
T ss_pred cCCCCEEEECCC
Confidence 146899887643
No 499
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=47.23 E-value=71 Score=27.31 Aligned_cols=75 Identities=15% Similarity=0.103 Sum_probs=47.8
Q ss_pred CCccEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCCC-------
Q 023562 157 QHLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (280)
Q Consensus 157 ~~~~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------- 226 (280)
.+.++|-.|++.| .++..|++++.. |..++.++.-++...+..... +.++.++.+|+.+...
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDINQELVDKGLAAYREL-------GIEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHHHhc-------CCceEEEEcCCCCHHHHHHHHHH
Confidence 3457888887765 245556666664 888898887776665554332 2357778888876420
Q ss_pred ---CCCcEEEEEccch
Q 023562 227 ---ETGRYDVIWVQWC 239 (280)
Q Consensus 227 ---~~~~fDlV~~~~~ 239 (280)
.-+++|+++.+..
T Consensus 81 ~~~~~~~id~li~~ag 96 (265)
T PRK07097 81 IEKEVGVIDILVNNAG 96 (265)
T ss_pred HHHhCCCCCEEEECCC
Confidence 1146899987644
No 500
>PRK08267 short chain dehydrogenase; Provisional
Probab=46.95 E-value=80 Score=26.81 Aligned_cols=69 Identities=16% Similarity=0.085 Sum_probs=44.5
Q ss_pred cEEEeecCcc---HHHHHHHHhcCCcEEEEeCCHHHHHHHHHHcCcCCCCCCCCCcceeEEEccCCCCC-----CC----
Q 023562 160 VALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE---- 227 (280)
Q Consensus 160 ~VLDlGcG~G---~~s~~l~~~~~~~v~~vD~S~~~l~~A~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~---- 227 (280)
++|-.|++.| .++..+++++. .|.+++.++..++....... ..++.++.+|+.+.. ..
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~v~~~~~~~~~ 72 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG---------AGNAWTGALDVTDRAAWDAALADFAA 72 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc---------CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 5777777654 23444555565 59999998887776655443 135778888887642 00
Q ss_pred --CCcEEEEEccc
Q 023562 228 --TGRYDVIWVQW 238 (280)
Q Consensus 228 --~~~fDlV~~~~ 238 (280)
.+++|+|+.+-
T Consensus 73 ~~~~~id~vi~~a 85 (260)
T PRK08267 73 ATGGRLDVLFNNA 85 (260)
T ss_pred HcCCCCCEEEECC
Confidence 25679988663
Done!