Query 023563
Match_columns 280
No_of_seqs 242 out of 2432
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:59:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1.4E-38 3.1E-43 274.4 11.2 171 51-233 1-228 (240)
2 COG1120 FepC ABC-type cobalami 100.0 1.6E-38 3.4E-43 284.0 10.7 179 52-244 2-239 (258)
3 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.7E-37 1E-41 273.4 13.2 184 51-249 3-243 (254)
4 COG1125 OpuBA ABC-type proline 100.0 4.2E-36 9.1E-41 264.4 8.1 183 52-246 1-241 (309)
5 COG0411 LivG ABC-type branched 100.0 1.4E-35 3E-40 260.0 7.1 177 51-241 3-247 (250)
6 COG1127 Ttg2A ABC-type transpo 100.0 1.2E-34 2.6E-39 253.4 10.8 170 50-230 6-235 (263)
7 COG3842 PotA ABC-type spermidi 100.0 1.1E-34 2.3E-39 269.7 10.1 180 51-244 4-240 (352)
8 COG1135 AbcC ABC-type metal io 100.0 2.2E-34 4.8E-39 259.7 10.2 172 52-234 1-235 (339)
9 COG1116 TauB ABC-type nitrate/ 100.0 8.3E-33 1.8E-37 243.9 15.3 154 52-217 3-206 (248)
10 COG3638 ABC-type phosphate/pho 100.0 8.7E-34 1.9E-38 247.4 8.9 177 51-242 2-245 (258)
11 COG1124 DppF ABC-type dipeptid 100.0 3.7E-32 7.9E-37 238.4 12.3 169 51-230 2-231 (252)
12 PRK13537 nodulation ABC transp 100.0 4.7E-32 1E-36 250.1 13.5 170 49-230 4-227 (306)
13 COG1118 CysA ABC-type sulfate/ 100.0 3.4E-32 7.5E-37 245.1 11.6 180 52-242 2-239 (345)
14 COG3839 MalK ABC-type sugar tr 100.0 3.6E-32 7.7E-37 251.6 11.8 177 52-242 3-235 (338)
15 COG4555 NatA ABC-type Na+ tran 100.0 9.1E-33 2E-37 236.0 6.8 173 52-236 1-228 (245)
16 COG1131 CcmA ABC-type multidru 100.0 1.4E-31 3E-36 245.6 13.8 167 52-229 4-225 (293)
17 PRK13536 nodulation factor exp 100.0 1.2E-31 2.6E-36 250.6 13.5 169 50-230 39-261 (340)
18 COG0410 LivF ABC-type branched 100.0 5.6E-32 1.2E-36 235.7 10.0 168 51-229 2-225 (237)
19 COG1137 YhbG ABC-type (unclass 100.0 1.3E-32 2.8E-37 234.9 4.9 179 51-244 3-239 (243)
20 COG1122 CbiO ABC-type cobalt t 100.0 4E-31 8.6E-36 234.9 11.7 167 51-229 2-227 (235)
21 TIGR02314 ABC_MetN D-methionin 100.0 4.2E-31 9.2E-36 247.1 12.0 168 52-230 1-230 (343)
22 PRK09536 btuD corrinoid ABC tr 100.0 6.6E-31 1.4E-35 250.2 12.3 167 51-229 2-227 (402)
23 TIGR01288 nodI ATP-binding ABC 100.0 1.4E-30 3E-35 239.8 13.1 168 51-230 3-224 (303)
24 PRK11432 fbpC ferric transport 100.0 7.6E-31 1.7E-35 246.2 11.5 173 51-234 5-230 (351)
25 TIGR03265 PhnT2 putative 2-ami 100.0 7.7E-31 1.7E-35 246.4 11.5 171 51-232 3-226 (353)
26 cd03261 ABC_Org_Solvent_Resist 100.0 1.2E-30 2.7E-35 231.3 12.0 166 53-229 1-225 (235)
27 COG4152 ABC-type uncharacteriz 100.0 3.5E-31 7.5E-36 232.1 8.1 166 52-229 2-218 (300)
28 PRK09452 potA putrescine/sperm 100.0 1.2E-30 2.6E-35 246.7 12.0 175 48-233 10-237 (375)
29 COG1136 SalX ABC-type antimicr 100.0 1.9E-30 4.2E-35 227.9 12.4 155 52-218 1-219 (226)
30 COG4604 CeuD ABC-type enteroch 100.0 1.2E-31 2.5E-36 228.6 4.1 177 52-242 1-234 (252)
31 PRK11650 ugpC glycerol-3-phosp 100.0 1.2E-30 2.5E-35 245.4 11.0 170 52-232 3-226 (356)
32 COG4559 ABC-type hemin transpo 100.0 4.5E-31 9.7E-36 227.3 6.8 178 52-244 1-241 (259)
33 COG1117 PstB ABC-type phosphat 100.0 5E-31 1.1E-35 227.2 6.9 170 50-233 5-240 (253)
34 PRK11000 maltose/maltodextrin 100.0 2.5E-30 5.5E-35 244.3 10.6 169 52-231 3-224 (369)
35 PRK11153 metN DL-methionine tr 100.0 1E-29 2.2E-34 238.0 14.2 167 52-229 1-229 (343)
36 PRK11607 potG putrescine trans 100.0 5.4E-30 1.2E-34 242.5 11.5 172 50-232 17-241 (377)
37 cd03265 ABC_DrrA DrrA is the A 100.0 1.4E-29 3.1E-34 222.4 13.3 165 53-228 1-219 (220)
38 cd03296 ABC_CysA_sulfate_impor 100.0 1.3E-29 2.9E-34 225.3 13.1 167 52-229 2-225 (239)
39 TIGR03258 PhnT 2-aminoethylpho 100.0 1.2E-29 2.5E-34 239.1 13.0 170 52-232 5-230 (362)
40 PRK11614 livF leucine/isoleuci 100.0 7.7E-30 1.7E-34 226.5 11.1 167 51-229 4-225 (237)
41 cd03224 ABC_TM1139_LivF_branch 100.0 8.5E-30 1.8E-34 223.6 11.2 165 53-229 1-220 (222)
42 PRK10851 sulfate/thiosulfate t 100.0 7.1E-30 1.5E-34 239.9 11.1 169 52-231 2-227 (353)
43 cd03256 ABC_PhnC_transporter A 100.0 1.1E-29 2.4E-34 225.5 11.7 166 53-229 1-233 (241)
44 cd03219 ABC_Mj1267_LivG_branch 100.0 1.2E-29 2.5E-34 224.9 11.7 165 53-229 1-231 (236)
45 cd03258 ABC_MetN_methionine_tr 100.0 2.4E-29 5.2E-34 222.6 13.5 167 52-229 1-229 (233)
46 cd03259 ABC_Carb_Solutes_like 100.0 2.6E-29 5.7E-34 219.5 13.5 160 53-223 1-213 (213)
47 PRK11300 livG leucine/isoleuci 100.0 1.8E-29 4E-34 226.2 12.6 168 51-229 4-242 (255)
48 PRK11831 putative ABC transpor 100.0 3.6E-29 7.9E-34 226.6 14.4 169 50-229 5-232 (269)
49 TIGR03522 GldA_ABC_ATP gliding 100.0 1.6E-29 3.5E-34 232.6 12.3 165 52-229 2-220 (301)
50 TIGR02315 ABC_phnC phosphonate 100.0 1.4E-29 2.9E-34 225.4 11.4 167 52-229 1-234 (243)
51 PRK09544 znuC high-affinity zi 100.0 1.4E-29 3.1E-34 227.4 11.3 168 51-229 3-208 (251)
52 cd03218 ABC_YhbG The ABC trans 100.0 2.6E-29 5.7E-34 222.1 12.6 165 53-229 1-221 (232)
53 cd03301 ABC_MalK_N The N-termi 100.0 3.4E-29 7.4E-34 218.6 13.1 160 53-223 1-213 (213)
54 PRK13637 cbiO cobalt transport 100.0 1.8E-29 3.9E-34 230.9 11.7 167 52-229 2-233 (287)
55 TIGR00960 3a0501s02 Type II (G 100.0 2.6E-29 5.7E-34 219.9 12.0 154 52-217 1-213 (216)
56 PRK13643 cbiO cobalt transport 100.0 1.7E-29 3.7E-34 231.1 10.9 166 52-229 1-232 (288)
57 PRK11022 dppD dipeptide transp 100.0 5.5E-29 1.2E-33 231.6 14.3 169 52-231 3-244 (326)
58 PRK13636 cbiO cobalt transport 100.0 4.6E-29 1E-33 227.6 13.5 168 51-229 4-230 (283)
59 cd03216 ABC_Carb_Monos_I This 100.0 1.1E-28 2.3E-33 207.8 14.6 146 53-220 1-161 (163)
60 PRK13634 cbiO cobalt transport 100.0 3.3E-29 7.3E-34 229.4 12.4 167 52-229 2-234 (290)
61 PRK13638 cbiO cobalt transport 100.0 2.6E-29 5.7E-34 227.7 11.6 166 52-229 1-224 (271)
62 PRK15079 oligopeptide ABC tran 100.0 3.5E-29 7.5E-34 233.3 12.5 170 50-230 6-251 (331)
63 PRK10895 lipopolysaccharide AB 100.0 2.9E-29 6.3E-34 223.3 11.4 166 52-229 3-225 (241)
64 cd03293 ABC_NrtD_SsuB_transpor 100.0 7.4E-29 1.6E-33 217.8 13.9 162 53-225 1-218 (220)
65 TIGR03410 urea_trans_UrtE urea 100.0 4E-29 8.7E-34 220.8 12.2 166 53-229 1-220 (230)
66 COG0444 DppD ABC-type dipeptid 100.0 5E-29 1.1E-33 226.8 13.0 172 52-234 1-247 (316)
67 PRK13647 cbiO cobalt transport 100.0 6.3E-29 1.4E-33 225.8 13.7 167 51-229 3-226 (274)
68 cd03266 ABC_NatA_sodium_export 100.0 5.4E-29 1.2E-33 218.1 12.6 159 52-222 1-217 (218)
69 PRK11247 ssuB aliphatic sulfon 100.0 8.8E-29 1.9E-33 223.0 14.3 165 51-226 11-219 (257)
70 PRK11264 putative amino-acid A 100.0 7.7E-29 1.7E-33 221.5 13.8 166 52-229 3-232 (250)
71 PRK11308 dppF dipeptide transp 100.0 4E-29 8.6E-34 232.6 12.3 170 50-230 3-244 (327)
72 COG1129 MglA ABC-type sugar tr 100.0 3.4E-29 7.5E-34 240.8 12.0 168 50-229 6-234 (500)
73 PRK13631 cbiO cobalt transport 100.0 4.2E-29 9.1E-34 231.8 12.2 172 46-229 15-264 (320)
74 PRK10619 histidine/lysine/argi 100.0 1.2E-28 2.6E-33 221.6 14.7 168 50-229 3-240 (257)
75 PRK13646 cbiO cobalt transport 100.0 3.4E-29 7.3E-34 228.9 11.3 167 52-229 2-234 (286)
76 PRK09984 phosphonate/organopho 100.0 1E-28 2.2E-33 222.6 14.2 168 50-228 2-240 (262)
77 PRK09473 oppD oligopeptide tra 100.0 1.2E-28 2.5E-33 229.7 15.0 173 48-231 8-252 (330)
78 PRK15093 antimicrobial peptide 100.0 8.1E-29 1.8E-33 230.8 13.9 168 51-229 2-247 (330)
79 PRK13644 cbiO cobalt transport 100.0 4.3E-29 9.2E-34 226.9 11.5 165 52-229 1-223 (274)
80 PRK10575 iron-hydroxamate tran 100.0 6.9E-29 1.5E-33 224.3 12.6 168 51-229 10-236 (265)
81 cd03263 ABC_subfamily_A The AB 100.0 5.6E-29 1.2E-33 218.3 11.6 163 53-228 1-219 (220)
82 COG2884 FtsE Predicted ATPase 100.0 8.1E-29 1.7E-33 210.0 12.0 160 52-223 1-219 (223)
83 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 8.5E-29 1.9E-33 219.7 12.7 166 52-229 1-220 (236)
84 cd03268 ABC_BcrA_bacitracin_re 100.0 1.5E-28 3.2E-33 214.0 14.0 159 53-223 1-208 (208)
85 PRK14250 phosphate ABC transpo 100.0 9E-29 1.9E-33 220.5 12.8 167 52-229 3-220 (241)
86 cd03257 ABC_NikE_OppD_transpor 100.0 8.3E-29 1.8E-33 218.0 12.3 160 52-222 1-227 (228)
87 PRK13651 cobalt transporter AT 100.0 7E-29 1.5E-33 228.9 12.3 166 52-229 2-253 (305)
88 PRK11231 fecE iron-dicitrate t 100.0 7.6E-29 1.6E-33 222.6 12.1 166 52-229 2-226 (255)
89 COG4175 ProV ABC-type proline/ 100.0 3.1E-29 6.7E-34 226.7 9.5 176 52-238 4-262 (386)
90 PRK13652 cbiO cobalt transport 100.0 7.2E-29 1.6E-33 225.7 12.0 168 51-229 2-226 (277)
91 cd03235 ABC_Metallic_Cations A 100.0 7.6E-29 1.6E-33 216.6 11.5 158 54-223 1-213 (213)
92 PRK09700 D-allose transporter 100.0 7.4E-29 1.6E-33 243.1 12.8 168 50-229 3-233 (510)
93 PRK11701 phnK phosphonate C-P 100.0 2.7E-28 5.8E-33 219.4 15.2 169 50-229 4-240 (258)
94 TIGR03411 urea_trans_UrtD urea 100.0 1.4E-28 3E-33 218.9 13.2 166 51-229 1-230 (242)
95 PRK10253 iron-enterobactin tra 100.0 8.9E-29 1.9E-33 223.5 11.9 169 50-229 5-232 (265)
96 COG4598 HisP ABC-type histidin 100.0 2.6E-29 5.6E-34 211.7 7.8 170 51-232 5-243 (256)
97 PRK11124 artP arginine transpo 100.0 1.9E-28 4E-33 218.2 13.7 166 52-229 2-229 (242)
98 PRK13633 cobalt transporter AT 100.0 9.9E-29 2.1E-33 225.1 12.1 168 50-229 2-232 (280)
99 PRK09493 glnQ glutamine ABC tr 100.0 3.3E-28 7.2E-33 216.4 15.2 166 52-229 1-224 (240)
100 PRK13641 cbiO cobalt transport 100.0 8.9E-29 1.9E-33 226.2 11.7 166 52-229 2-233 (287)
101 PRK11248 tauB taurine transpor 100.0 3E-28 6.4E-33 219.2 14.8 163 52-225 1-215 (255)
102 PRK10070 glycine betaine trans 100.0 8.6E-29 1.9E-33 235.6 11.8 167 53-230 29-254 (400)
103 TIGR02769 nickel_nikE nickel i 100.0 1.3E-28 2.8E-33 222.5 12.3 167 52-229 2-239 (265)
104 cd03269 ABC_putative_ATPase Th 100.0 2.7E-28 5.9E-33 212.6 13.8 158 53-222 1-209 (210)
105 PRK13650 cbiO cobalt transport 100.0 1E-28 2.2E-33 225.0 11.5 167 51-229 3-228 (279)
106 TIGR02673 FtsE cell division A 100.0 1.3E-28 2.9E-33 215.0 11.7 154 52-217 1-212 (214)
107 PRK15112 antimicrobial peptide 100.0 1.9E-28 4.1E-33 221.7 12.9 169 50-229 2-238 (267)
108 cd03260 ABC_PstB_phosphate_tra 100.0 2E-28 4.4E-33 215.9 12.7 163 53-228 1-227 (227)
109 PRK14242 phosphate transporter 100.0 2.9E-28 6.4E-33 218.3 13.9 167 50-229 4-236 (253)
110 PRK13548 hmuV hemin importer A 100.0 1.4E-28 3E-33 221.5 11.8 167 52-229 2-229 (258)
111 TIGR01188 drrA daunorubicin re 100.0 1.1E-28 2.5E-33 227.0 11.5 159 60-230 1-213 (302)
112 PRK14248 phosphate ABC transpo 100.0 2.7E-28 5.9E-33 220.6 13.7 168 49-229 18-251 (268)
113 PRK10908 cell division protein 100.0 2.6E-28 5.7E-33 214.6 13.0 157 52-220 1-216 (222)
114 PRK15439 autoinducer 2 ABC tra 100.0 9E-29 1.9E-33 242.7 11.1 168 50-229 9-228 (510)
115 PRK13635 cbiO cobalt transport 100.0 1.3E-28 2.8E-33 224.4 11.2 168 50-229 3-228 (279)
116 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.3E-28 7.2E-33 213.1 13.3 153 53-217 1-215 (218)
117 COG3845 ABC-type uncharacteriz 100.0 2.8E-28 6.1E-33 231.3 13.8 163 50-224 2-223 (501)
118 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2E-28 4.3E-33 218.2 12.0 166 53-229 1-224 (242)
119 TIGR01978 sufC FeS assembly AT 100.0 3.4E-28 7.3E-33 216.3 13.5 165 53-229 1-233 (243)
120 PRK14268 phosphate ABC transpo 100.0 3.2E-28 6.9E-33 219.0 13.4 167 50-229 10-241 (258)
121 cd03229 ABC_Class3 This class 100.0 6.7E-28 1.4E-32 205.5 14.6 154 53-217 1-176 (178)
122 COG1123 ATPase components of v 100.0 2.3E-28 4.9E-33 236.7 13.1 173 49-232 277-521 (539)
123 PRK10762 D-ribose transporter 100.0 2.2E-28 4.7E-33 239.4 13.1 167 51-229 3-229 (501)
124 PRK11144 modC molybdate transp 100.0 2.5E-28 5.3E-33 229.4 12.9 168 52-233 1-221 (352)
125 TIGR00972 3a0107s01c2 phosphat 100.0 4.7E-28 1E-32 216.4 13.9 165 52-229 1-231 (247)
126 PRK14274 phosphate ABC transpo 100.0 3.8E-28 8.2E-33 218.5 13.3 167 50-229 10-242 (259)
127 cd03230 ABC_DR_subfamily_A Thi 100.0 6.7E-28 1.4E-32 204.6 14.0 153 53-217 1-170 (173)
128 PRK14267 phosphate ABC transpo 100.0 4.3E-28 9.2E-33 217.3 13.5 166 51-229 3-236 (253)
129 PRK14273 phosphate ABC transpo 100.0 4.3E-28 9.2E-33 217.5 13.4 166 51-229 6-237 (254)
130 TIGR02323 CP_lyasePhnK phospho 100.0 2.9E-28 6.2E-33 218.4 12.0 168 51-229 2-237 (253)
131 TIGR03005 ectoine_ehuA ectoine 100.0 7.2E-28 1.6E-32 215.8 14.5 166 53-229 1-235 (252)
132 PRK13640 cbiO cobalt transport 100.0 4.4E-28 9.6E-33 221.1 13.2 168 50-229 3-231 (282)
133 cd03226 ABC_cobalt_CbiO_domain 100.0 3.4E-28 7.5E-33 211.4 11.9 154 54-219 1-204 (205)
134 PRK14239 phosphate transporter 100.0 6E-28 1.3E-32 216.1 13.7 166 51-229 4-235 (252)
135 PRK13549 xylose transporter AT 100.0 4.3E-28 9.3E-33 237.6 13.8 167 51-229 4-231 (506)
136 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.3E-28 5E-33 221.5 10.7 165 54-229 26-249 (269)
137 PRK13645 cbiO cobalt transport 100.0 4.9E-28 1.1E-32 221.4 12.5 168 51-229 5-239 (289)
138 TIGR03873 F420-0_ABC_ATP propo 100.0 3.4E-28 7.4E-33 218.5 11.3 165 53-229 2-225 (256)
139 TIGR01186 proV glycine betaine 100.0 5.1E-28 1.1E-32 227.8 12.9 162 60-232 1-221 (363)
140 PRK13649 cbiO cobalt transport 100.0 4.3E-28 9.3E-33 220.6 12.0 166 52-229 2-233 (280)
141 cd03215 ABC_Carb_Monos_II This 100.0 8.6E-28 1.9E-32 205.5 13.1 151 51-217 3-179 (182)
142 PRK13648 cbiO cobalt transport 100.0 7.3E-28 1.6E-32 218.0 13.3 168 50-229 5-230 (269)
143 TIGR02211 LolD_lipo_ex lipopro 100.0 6.9E-28 1.5E-32 211.5 12.6 157 52-220 1-220 (221)
144 PRK10419 nikE nickel transport 100.0 8.2E-28 1.8E-32 217.8 13.5 168 51-229 2-240 (268)
145 PRK14245 phosphate ABC transpo 100.0 9.2E-28 2E-32 214.8 13.7 166 51-229 2-233 (250)
146 PRK15056 manganese/iron transp 100.0 8.3E-28 1.8E-32 218.1 13.4 166 52-229 6-229 (272)
147 cd03292 ABC_FtsE_transporter F 100.0 4.6E-28 1E-32 211.5 11.3 153 53-217 1-211 (214)
148 cd03264 ABC_drug_resistance_li 100.0 4.9E-28 1.1E-32 211.2 11.5 157 53-223 1-211 (211)
149 PRK14247 phosphate ABC transpo 100.0 8.5E-28 1.8E-32 215.0 13.2 166 51-229 2-233 (250)
150 PRK10418 nikD nickel transport 100.0 6.3E-28 1.4E-32 216.6 12.3 166 52-229 4-229 (254)
151 PRK14262 phosphate ABC transpo 100.0 1.1E-27 2.4E-32 214.2 13.7 166 51-229 2-233 (250)
152 cd03214 ABC_Iron-Siderophores_ 100.0 1E-27 2.3E-32 204.7 13.0 150 54-221 1-178 (180)
153 PRK11629 lolD lipoprotein tran 100.0 1.4E-27 3E-32 211.6 14.1 162 51-224 4-228 (233)
154 PRK14241 phosphate transporter 100.0 1.1E-27 2.5E-32 215.3 13.7 165 52-229 4-241 (258)
155 cd03225 ABC_cobalt_CbiO_domain 100.0 6.4E-28 1.4E-32 210.3 11.6 152 54-217 1-209 (211)
156 PRK10584 putative ABC transpor 99.9 1.8E-27 3.9E-32 210.0 14.5 158 51-220 5-225 (228)
157 PRK13639 cbiO cobalt transport 99.9 1.3E-27 2.9E-32 217.1 13.9 166 52-229 1-225 (275)
158 COG4674 Uncharacterized ABC-ty 99.9 2.8E-28 6.1E-33 207.6 8.7 178 51-244 4-246 (249)
159 PRK13642 cbiO cobalt transport 99.9 5.6E-28 1.2E-32 219.8 11.3 167 51-229 3-228 (277)
160 PRK13547 hmuV hemin importer A 99.9 1.4E-27 2.9E-32 217.0 13.7 167 52-229 1-243 (272)
161 PRK10744 pstB phosphate transp 99.9 1.2E-27 2.6E-32 215.6 13.1 167 50-229 11-243 (260)
162 TIGR03740 galliderm_ABC gallid 99.9 3.6E-27 7.9E-32 207.5 15.6 162 53-226 1-209 (223)
163 PRK14270 phosphate ABC transpo 99.9 1.4E-27 3.1E-32 213.8 13.2 167 50-229 2-234 (251)
164 PRK14251 phosphate ABC transpo 99.9 1.6E-27 3.4E-32 213.3 13.3 166 51-229 3-234 (251)
165 PRK10771 thiQ thiamine transpo 99.9 1.4E-27 3E-32 211.5 12.8 165 52-229 1-218 (232)
166 COG1123 ATPase components of v 99.9 9.1E-28 2E-32 232.5 12.4 175 51-236 4-250 (539)
167 PRK14255 phosphate ABC transpo 99.9 1.9E-27 4.1E-32 213.0 13.6 167 50-229 3-235 (252)
168 PRK10938 putative molybdenum t 99.9 9.7E-28 2.1E-32 234.1 12.7 166 52-229 3-223 (490)
169 COG3840 ThiQ ABC-type thiamine 99.9 7.5E-28 1.6E-32 203.1 10.2 163 52-231 1-220 (231)
170 PRK14237 phosphate transporter 99.9 2.1E-27 4.6E-32 214.8 14.0 167 50-229 18-250 (267)
171 CHL00131 ycf16 sulfate ABC tra 99.9 2E-27 4.4E-32 212.6 13.8 165 51-227 6-238 (252)
172 cd03262 ABC_HisP_GlnQ_permease 99.9 3E-27 6.6E-32 206.1 14.3 153 53-217 1-210 (213)
173 cd03217 ABC_FeS_Assembly ABC-t 99.9 1.1E-27 2.3E-32 208.0 11.4 161 53-225 1-189 (200)
174 cd03246 ABCC_Protease_Secretio 99.9 1.3E-27 2.8E-32 202.8 11.7 151 53-217 1-170 (173)
175 PRK13632 cbiO cobalt transport 99.9 1.2E-27 2.7E-32 216.9 12.0 168 50-229 5-230 (271)
176 PRK14253 phosphate ABC transpo 99.9 1.8E-27 4E-32 212.7 12.9 165 52-229 3-232 (249)
177 PRK14265 phosphate ABC transpo 99.9 2.4E-27 5.3E-32 215.4 13.8 166 51-229 19-257 (274)
178 PRK14236 phosphate transporter 99.9 3.5E-27 7.6E-32 214.0 14.8 169 48-229 21-255 (272)
179 PRK14249 phosphate ABC transpo 99.9 2.2E-27 4.7E-32 212.6 13.2 167 50-229 2-234 (251)
180 PRK14256 phosphate ABC transpo 99.9 3.7E-27 8E-32 211.2 14.7 166 51-229 3-235 (252)
181 cd03300 ABC_PotA_N PotA is an 99.9 2.1E-27 4.5E-32 210.4 12.9 166 53-229 1-219 (232)
182 PRK14261 phosphate ABC transpo 99.9 2.9E-27 6.4E-32 212.0 14.0 167 50-229 4-236 (253)
183 PRK14259 phosphate ABC transpo 99.9 1.6E-27 3.4E-32 216.0 12.3 166 51-229 12-252 (269)
184 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.8E-27 4E-32 207.5 12.3 157 53-222 1-210 (211)
185 TIGR03415 ABC_choXWV_ATP choli 99.9 2.9E-28 6.3E-33 230.6 7.6 166 55-231 27-255 (382)
186 PRK10247 putative ABC transpor 99.9 3.7E-27 8.1E-32 208.0 13.5 164 50-225 5-222 (225)
187 PRK10261 glutathione transport 99.9 1.7E-27 3.6E-32 238.8 12.7 170 50-230 311-553 (623)
188 cd03213 ABCG_EPDR ABCG transpo 99.9 5.3E-27 1.1E-31 202.8 13.9 158 52-222 3-193 (194)
189 PRK14235 phosphate transporter 99.9 6.6E-27 1.4E-31 211.6 15.2 168 49-229 16-250 (267)
190 TIGR00968 3a0106s01 sulfate AB 99.9 4.2E-27 9.1E-32 209.3 13.5 166 53-229 1-219 (237)
191 PRK14275 phosphate ABC transpo 99.9 3.6E-27 7.7E-32 215.6 13.4 168 49-229 36-269 (286)
192 cd03247 ABCC_cytochrome_bd The 99.9 1.6E-27 3.5E-32 203.0 10.4 155 53-222 1-177 (178)
193 PRK10261 glutathione transport 99.9 4.8E-27 1.1E-31 235.5 15.3 170 49-229 9-257 (623)
194 TIGR03269 met_CoM_red_A2 methy 99.9 2.1E-27 4.5E-32 233.4 12.3 166 53-229 1-257 (520)
195 TIGR02142 modC_ABC molybdenum 99.9 2.4E-27 5.2E-32 222.9 12.2 162 57-231 4-222 (354)
196 PRK14258 phosphate ABC transpo 99.9 4.4E-27 9.6E-32 212.0 13.3 168 51-229 6-244 (261)
197 PRK13543 cytochrome c biogenes 99.9 6.4E-27 1.4E-31 205.0 13.9 156 50-217 9-212 (214)
198 PRK15134 microcin C ABC transp 99.9 5E-27 1.1E-31 231.2 14.5 168 51-229 4-245 (529)
199 PRK14272 phosphate ABC transpo 99.9 7.2E-27 1.6E-31 209.1 14.2 165 52-229 4-235 (252)
200 PRK09580 sufC cysteine desulfu 99.9 6.5E-27 1.4E-31 208.7 13.8 164 52-227 1-232 (248)
201 PRK14269 phosphate ABC transpo 99.9 1.1E-26 2.3E-31 207.6 15.0 165 52-229 2-229 (246)
202 cd03232 ABC_PDR_domain2 The pl 99.9 1.2E-26 2.6E-31 200.2 14.7 158 52-221 3-190 (192)
203 TIGR02633 xylG D-xylose ABC tr 99.9 6.7E-27 1.5E-31 228.7 14.9 165 52-228 1-228 (500)
204 PRK15134 microcin C ABC transp 99.9 3.7E-27 8.1E-32 232.1 13.1 169 50-229 273-514 (529)
205 PRK14240 phosphate transporter 99.9 8.9E-27 1.9E-31 208.4 14.3 165 52-229 3-233 (250)
206 PRK14260 phosphate ABC transpo 99.9 6.8E-27 1.5E-31 210.5 13.4 166 51-229 6-242 (259)
207 PRK14243 phosphate transporter 99.9 8.2E-27 1.8E-31 210.7 13.8 166 51-229 9-247 (264)
208 PRK14271 phosphate ABC transpo 99.9 1.1E-26 2.3E-31 211.5 14.5 167 50-229 19-250 (276)
209 PRK11288 araG L-arabinose tran 99.9 4.8E-27 1E-31 229.9 13.0 162 51-224 3-223 (501)
210 PRK14238 phosphate transporter 99.9 1.1E-26 2.3E-31 210.8 14.2 167 50-229 22-254 (271)
211 cd03297 ABC_ModC_molybdenum_tr 99.9 1.1E-26 2.3E-31 203.2 13.3 156 53-223 2-214 (214)
212 PRK10982 galactose/methyl gala 99.9 4.2E-27 9.1E-32 229.7 11.9 162 55-228 1-221 (491)
213 COG4608 AppF ABC-type oligopep 99.9 2.9E-27 6.4E-32 211.1 9.8 167 51-232 3-201 (268)
214 PRK14254 phosphate ABC transpo 99.9 1.5E-26 3.2E-31 211.5 14.6 168 49-229 36-268 (285)
215 PRK14252 phosphate ABC transpo 99.9 1.3E-26 2.9E-31 209.3 13.7 166 51-229 15-248 (265)
216 PRK14244 phosphate ABC transpo 99.9 1.3E-26 2.8E-31 207.5 13.0 164 53-229 6-236 (251)
217 TIGR03269 met_CoM_red_A2 methy 99.9 9.9E-27 2.1E-31 228.6 13.1 169 50-229 277-516 (520)
218 PRK13538 cytochrome c biogenes 99.9 1.3E-26 2.8E-31 201.6 12.3 152 52-215 1-202 (204)
219 PRK14246 phosphate ABC transpo 99.9 1.7E-26 3.7E-31 208.0 13.6 168 49-229 7-240 (257)
220 TIGR03608 L_ocin_972_ABC putat 99.9 1.6E-26 3.4E-31 200.7 12.7 148 55-215 1-206 (206)
221 cd03299 ABC_ModC_like Archeal 99.9 2.6E-26 5.7E-31 203.9 14.4 165 53-229 1-218 (235)
222 cd03289 ABCC_CFTR2 The CFTR su 99.9 1E-26 2.2E-31 211.6 11.8 164 53-230 3-225 (275)
223 cd03267 ABC_NatA_like Similar 99.9 2.3E-26 5E-31 204.5 13.8 152 60-222 29-235 (236)
224 cd03222 ABC_RNaseL_inhibitor T 99.9 5.1E-26 1.1E-30 194.4 15.3 137 56-217 4-147 (177)
225 PRK13549 xylose transporter AT 99.9 1.2E-26 2.5E-31 227.5 12.3 168 50-229 257-493 (506)
226 COG4586 ABC-type uncharacteriz 99.9 4.6E-27 9.9E-32 209.0 8.3 156 66-232 38-248 (325)
227 cd03252 ABCC_Hemolysin The ABC 99.9 2E-26 4.3E-31 204.4 12.1 163 53-229 1-224 (237)
228 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 7.3E-26 1.6E-30 187.0 14.6 135 53-217 1-142 (144)
229 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 2E-26 4.4E-31 203.4 11.9 159 53-223 23-224 (224)
230 PRK14257 phosphate ABC transpo 99.9 1.4E-26 3E-31 215.7 11.5 166 51-229 79-312 (329)
231 TIGR01277 thiQ thiamine ABC tr 99.9 6.4E-26 1.4E-30 198.3 14.8 159 53-224 1-212 (213)
232 cd03251 ABCC_MsbA MsbA is an e 99.9 2.2E-26 4.8E-31 203.6 11.8 163 53-229 1-224 (234)
233 cd03245 ABCC_bacteriocin_expor 99.9 2.9E-26 6.3E-31 201.0 12.3 156 53-222 3-219 (220)
234 PRK14266 phosphate ABC transpo 99.9 5.6E-26 1.2E-30 203.2 14.3 165 52-229 3-233 (250)
235 cd03233 ABC_PDR_domain1 The pl 99.9 9.7E-26 2.1E-30 196.1 15.1 160 52-222 3-201 (202)
236 cd03254 ABCC_Glucan_exporter_l 99.9 2.7E-26 6E-31 202.4 11.8 163 53-229 3-225 (229)
237 COG1119 ModF ABC-type molybden 99.9 1.8E-26 3.9E-31 202.8 10.3 164 50-224 29-256 (257)
238 TIGR02982 heterocyst_DevA ABC 99.9 5E-26 1.1E-30 200.0 13.1 156 52-219 1-219 (220)
239 PRK14263 phosphate ABC transpo 99.9 8.6E-26 1.9E-30 203.9 14.9 167 50-229 6-244 (261)
240 COG4525 TauB ABC-type taurine 99.9 4E-26 8.7E-31 194.6 11.9 158 51-226 2-220 (259)
241 TIGR02324 CP_lyasePhnL phospho 99.9 8.6E-26 1.9E-30 198.7 13.9 153 52-216 1-223 (224)
242 cd03228 ABCC_MRP_Like The MRP 99.9 4.6E-26 1E-30 193.0 11.2 150 53-217 1-169 (171)
243 TIGR01257 rim_protein retinal- 99.9 2.8E-26 6E-31 249.9 12.3 172 50-233 1935-2162(2272)
244 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 7.6E-26 1.6E-30 200.8 12.8 163 53-229 1-225 (238)
245 PRK13539 cytochrome c biogenes 99.9 8.8E-26 1.9E-30 196.9 12.9 152 52-217 2-200 (207)
246 cd03223 ABCD_peroxisomal_ALDP 99.9 1.9E-25 4.2E-30 188.6 14.3 147 53-217 1-162 (166)
247 cd03234 ABCG_White The White s 99.9 1.5E-25 3.3E-30 197.7 14.1 160 52-223 3-226 (226)
248 PRK10636 putative ABC transpor 99.9 6.1E-26 1.3E-30 228.1 13.0 165 50-229 310-516 (638)
249 cd03253 ABCC_ATM1_transporter 99.9 6.2E-26 1.4E-30 201.0 11.6 163 53-229 1-223 (236)
250 PRK03695 vitamin B12-transport 99.9 5.7E-26 1.2E-30 203.4 11.2 160 54-229 2-221 (248)
251 TIGR02633 xylG D-xylose ABC tr 99.9 5.6E-26 1.2E-30 222.2 11.9 166 50-227 255-489 (500)
252 PRK14264 phosphate ABC transpo 99.9 1E-25 2.2E-30 207.8 12.9 169 48-229 41-288 (305)
253 cd03231 ABC_CcmA_heme_exporter 99.9 9.2E-26 2E-30 195.9 11.8 151 53-215 1-198 (201)
254 PRK15064 ABC transporter ATP-b 99.9 1.2E-25 2.6E-30 221.5 14.0 167 52-229 1-241 (530)
255 TIGR01189 ccmA heme ABC export 99.9 8.4E-26 1.8E-30 195.5 11.4 147 53-215 1-198 (198)
256 COG2274 SunT ABC-type bacterio 99.9 1.9E-26 4.1E-31 232.3 8.4 163 52-229 471-695 (709)
257 PRK15064 ABC transporter ATP-b 99.9 8.7E-26 1.9E-30 222.4 12.7 165 50-229 317-524 (530)
258 COG4161 ArtP ABC-type arginine 99.9 8.4E-26 1.8E-30 187.7 10.4 166 52-229 2-229 (242)
259 PRK09700 D-allose transporter 99.9 4.6E-26 1E-30 223.4 10.5 162 50-225 263-493 (510)
260 COG1134 TagH ABC-type polysacc 99.9 1.3E-25 2.8E-30 197.4 12.1 154 64-230 39-236 (249)
261 PRK10938 putative molybdenum t 99.9 5E-26 1.1E-30 222.1 10.4 164 49-222 257-484 (490)
262 PRK13545 tagH teichoic acids e 99.9 1.1E-25 2.3E-30 218.9 12.2 168 50-229 19-231 (549)
263 cd03369 ABCC_NFT1 Domain 2 of 99.9 1.4E-25 3.1E-30 195.2 11.4 160 52-225 6-207 (207)
264 PRK11819 putative ABC transpor 99.9 3.1E-25 6.7E-30 219.8 14.3 168 50-228 4-248 (556)
265 PRK10636 putative ABC transpor 99.9 1.1E-25 2.3E-30 226.3 10.9 166 52-228 1-234 (638)
266 COG0396 sufC Cysteine desulfur 99.9 2.7E-25 5.8E-30 193.6 11.6 167 51-229 2-232 (251)
267 PRK13540 cytochrome c biogenes 99.9 1.5E-25 3.3E-30 194.2 10.1 143 52-196 1-191 (200)
268 COG4181 Predicted ABC-type tra 99.9 6.2E-25 1.3E-29 183.9 13.2 158 52-221 6-226 (228)
269 cd03248 ABCC_TAP TAP, the Tran 99.9 3.2E-25 6.9E-30 195.4 12.0 158 46-217 5-223 (226)
270 TIGR02770 nickel_nikD nickel i 99.9 2.7E-25 6E-30 196.6 11.5 152 67-229 1-214 (230)
271 cd03250 ABCC_MRP_domain1 Domai 99.9 3.6E-25 7.8E-30 192.2 12.0 151 53-217 1-202 (204)
272 PRK15439 autoinducer 2 ABC tra 99.9 4.5E-26 9.7E-31 223.6 7.0 163 50-229 266-491 (510)
273 cd03244 ABCC_MRP_domain2 Domai 99.9 9.6E-25 2.1E-29 191.5 14.4 158 53-224 3-220 (221)
274 TIGR01257 rim_protein retinal- 99.9 2.3E-25 5E-30 242.8 12.7 174 49-235 925-1154(2272)
275 COG4172 ABC-type uncharacteriz 99.9 2.7E-25 5.7E-30 206.7 11.1 175 50-235 4-252 (534)
276 cd03288 ABCC_SUR2 The SUR doma 99.9 7.4E-25 1.6E-29 197.1 13.5 167 49-229 16-242 (257)
277 TIGR01184 ntrCD nitrate transp 99.9 6E-25 1.3E-29 194.7 12.4 150 68-228 1-202 (230)
278 PRK13409 putative ATPase RIL; 99.9 6.8E-25 1.5E-29 218.4 14.1 163 50-224 338-536 (590)
279 PRK11176 lipid transporter ATP 99.9 1.7E-25 3.7E-30 222.3 9.2 164 52-229 341-566 (582)
280 PRK11174 cysteine/glutathione 99.9 3.7E-25 8.1E-30 220.2 11.5 164 52-229 349-571 (588)
281 COG4172 ABC-type uncharacteriz 99.9 1E-24 2.2E-29 202.8 13.2 174 48-232 272-518 (534)
282 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 6.2E-25 1.3E-29 222.4 12.4 162 52-229 451-672 (686)
283 PRK10762 D-ribose transporter 99.9 1.5E-25 3.3E-30 219.3 7.6 163 50-229 255-483 (501)
284 PRK10982 galactose/methyl gala 99.9 2.9E-25 6.4E-30 216.8 9.6 163 50-226 248-476 (491)
285 TIGR03375 type_I_sec_LssB type 99.9 3.2E-25 7E-30 224.7 10.2 164 52-229 463-687 (694)
286 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.1E-24 2.5E-29 215.6 13.8 168 51-229 3-247 (552)
287 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 2.4E-25 5.3E-30 226.1 9.0 162 52-229 477-699 (710)
288 PRK11288 araG L-arabinose tran 99.9 4.4E-25 9.5E-30 216.1 9.8 164 50-229 255-484 (501)
289 PTZ00293 thymidine kinase; Pro 99.9 4.9E-24 1.1E-28 185.7 15.2 174 76-256 2-177 (211)
290 PRK10790 putative multidrug tr 99.9 5.2E-25 1.1E-29 219.5 10.0 164 52-229 340-562 (592)
291 cd00267 ABC_ATPase ABC (ATP-bi 99.9 8.6E-24 1.9E-28 176.3 15.7 141 55-217 2-155 (157)
292 COG4987 CydC ABC-type transpor 99.9 3E-25 6.4E-30 212.4 7.4 164 52-230 336-561 (573)
293 TIGR01193 bacteriocin_ABC ABC- 99.9 5E-25 1.1E-29 223.8 9.0 163 52-229 473-696 (708)
294 PRK11147 ABC transporter ATPas 99.9 2.1E-24 4.6E-29 216.9 13.3 166 52-229 3-242 (635)
295 COG0488 Uup ATPase components 99.9 1.8E-24 3.9E-29 211.8 12.4 167 51-228 2-238 (530)
296 TIGR01842 type_I_sec_PrtD type 99.9 1.1E-24 2.3E-29 215.3 10.9 165 52-229 316-541 (544)
297 PRK13657 cyclic beta-1,2-gluca 99.9 9.3E-25 2E-29 217.5 10.0 164 52-229 334-557 (588)
298 PRK13546 teichoic acids export 99.9 6.2E-24 1.3E-28 192.2 14.5 153 65-229 37-231 (264)
299 PRK11147 ABC transporter ATPas 99.9 5.2E-24 1.1E-28 214.1 15.4 168 50-228 317-526 (635)
300 PLN03211 ABC transporter G-25; 99.9 1.3E-24 2.7E-29 219.0 10.9 164 54-229 70-295 (659)
301 TIGR00958 3a01208 Conjugate Tr 99.9 9.8E-25 2.1E-29 221.9 9.9 166 52-229 478-701 (711)
302 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 4.4E-24 9.4E-29 211.4 13.9 163 50-227 320-528 (552)
303 TIGR02203 MsbA_lipidA lipid A 99.9 1.7E-24 3.7E-29 214.5 10.5 164 52-229 330-555 (571)
304 cd03237 ABC_RNaseL_inhibitor_d 99.9 2.2E-24 4.7E-29 193.3 10.2 141 66-217 8-191 (246)
305 PRK11160 cysteine/glutathione 99.9 1.3E-24 2.8E-29 216.1 9.4 165 51-229 337-561 (574)
306 COG1132 MdlB ABC-type multidru 99.9 1.2E-24 2.7E-29 215.8 9.2 163 52-229 328-551 (567)
307 PLN03073 ABC transporter F fam 99.9 3.7E-24 8E-29 217.1 12.7 166 50-227 506-711 (718)
308 PRK11819 putative ABC transpor 99.9 5.8E-24 1.3E-28 210.7 13.6 164 50-228 322-531 (556)
309 COG4107 PhnK ABC-type phosphon 99.9 1E-23 2.2E-28 177.2 12.9 169 50-229 4-240 (258)
310 KOG0057 Mitochondrial Fe/S clu 99.9 4.2E-24 9.2E-29 204.8 11.9 164 52-230 351-574 (591)
311 TIGR01846 type_I_sec_HlyB type 99.9 1.7E-24 3.8E-29 219.5 9.5 163 52-229 455-679 (694)
312 KOG0058 Peptide exporter, ABC 99.9 3.7E-24 8E-29 211.0 10.9 166 50-230 463-691 (716)
313 COG4988 CydD ABC-type transpor 99.9 3E-24 6.6E-29 207.7 10.0 163 53-229 321-542 (559)
314 cd03291 ABCC_CFTR1 The CFTR su 99.9 1.4E-23 3.1E-28 191.6 13.9 165 49-229 36-246 (282)
315 cd03238 ABC_UvrA The excision 99.9 7.2E-24 1.6E-28 181.0 11.1 137 65-217 8-163 (176)
316 PRK10535 macrolide transporter 99.9 1.8E-23 3.9E-28 210.6 16.0 166 51-229 3-231 (648)
317 TIGR01192 chvA glucan exporter 99.9 2.8E-24 6.1E-29 214.1 9.8 164 52-229 334-557 (585)
318 KOG0055 Multidrug/pheromone ex 99.9 2.2E-24 4.8E-29 222.8 9.0 164 51-230 349-576 (1228)
319 PLN03073 ABC transporter F fam 99.9 7.8E-24 1.7E-28 214.8 12.8 167 51-228 176-429 (718)
320 PRK13541 cytochrome c biogenes 99.9 2.1E-23 4.6E-28 180.1 13.2 142 52-196 1-187 (195)
321 cd03290 ABCC_SUR1_N The SUR do 99.9 6.6E-24 1.4E-28 186.1 10.1 151 54-217 2-216 (218)
322 TIGR02204 MsbA_rel ABC transpo 99.9 1.1E-23 2.4E-28 209.1 12.1 164 52-229 337-562 (576)
323 PRK10789 putative multidrug tr 99.9 1.4E-23 2.9E-28 208.6 12.2 164 52-229 313-537 (569)
324 TIGR01166 cbiO cobalt transpor 99.9 7.1E-24 1.5E-28 182.2 8.3 132 62-195 2-190 (190)
325 COG0488 Uup ATPase components 99.9 1.8E-23 3.9E-28 204.8 11.7 168 49-227 318-522 (530)
326 TIGR03771 anch_rpt_ABC anchore 99.9 5.4E-24 1.2E-28 187.7 6.9 145 73-229 1-200 (223)
327 PLN03130 ABC transporter C fam 99.9 1.1E-23 2.4E-28 229.0 9.8 165 52-230 1237-1461(1622)
328 TIGR02857 CydD thiol reductant 99.9 1.6E-23 3.5E-28 206.1 9.7 150 52-215 320-529 (529)
329 cd03236 ABC_RNaseL_inhibitor_d 99.9 4.3E-23 9.4E-28 185.9 11.7 155 56-223 4-220 (255)
330 PLN03232 ABC transporter C fam 99.9 1.1E-23 2.5E-28 228.1 9.0 164 52-229 1234-1457(1495)
331 COG4148 ModC ABC-type molybdat 99.9 2E-23 4.4E-28 186.4 8.5 160 58-231 6-219 (352)
332 PRK10522 multidrug transporter 99.9 1E-22 2.2E-27 201.5 14.1 159 52-222 322-530 (547)
333 PRK15177 Vi polysaccharide exp 99.9 1E-22 2.2E-27 178.7 12.6 150 66-229 1-191 (213)
334 KOG3125 Thymidine kinase [Nucl 99.9 1.4E-22 3.1E-27 171.5 12.6 198 75-273 24-223 (234)
335 TIGR01194 cyc_pep_trnsptr cycl 99.9 7E-23 1.5E-27 203.0 11.7 156 52-220 337-549 (555)
336 TIGR00957 MRP_assoc_pro multi 99.9 3.6E-23 7.7E-28 224.6 9.6 164 52-229 1284-1507(1522)
337 PTZ00243 ABC transporter; Prov 99.9 4.4E-23 9.6E-28 223.9 10.1 164 52-229 1308-1532(1560)
338 TIGR00954 3a01203 Peroxysomal 99.9 1.4E-22 3.1E-27 204.4 12.6 155 51-217 450-653 (659)
339 PTZ00265 multidrug resistance 99.9 7E-23 1.5E-27 221.0 10.6 166 52-229 1165-1451(1466)
340 PF00265 TK: Thymidine kinase; 99.9 2.8E-22 6.1E-27 171.1 11.7 173 78-255 1-176 (176)
341 COG4619 ABC-type uncharacteriz 99.9 5.6E-23 1.2E-27 171.7 7.1 155 52-218 3-210 (223)
342 TIGR01271 CFTR_protein cystic 99.9 1.6E-22 3.4E-27 219.1 11.8 164 52-229 1217-1439(1490)
343 PTZ00265 multidrug resistance 99.9 1.8E-22 3.9E-27 217.9 11.5 51 52-103 382-435 (1466)
344 TIGR02868 CydC thiol reductant 99.9 8.4E-23 1.8E-27 201.0 7.8 138 52-192 334-529 (529)
345 COG4167 SapF ABC-type antimicr 99.9 1.3E-22 2.7E-27 171.8 7.0 170 51-231 3-240 (267)
346 TIGR00956 3a01205 Pleiotropic 99.9 5.6E-22 1.2E-26 213.5 13.8 166 51-227 758-990 (1394)
347 COG4136 ABC-type uncharacteriz 99.9 6.5E-22 1.4E-26 162.7 10.0 149 52-216 2-208 (213)
348 COG4618 ArpD ABC-type protease 99.9 3.8E-22 8.2E-27 190.0 8.4 168 52-232 334-562 (580)
349 PRK13409 putative ATPase RIL; 99.9 4.2E-22 9E-27 198.5 9.0 147 57-217 78-286 (590)
350 TIGR00955 3a01204 The Eye Pigm 99.9 7.4E-22 1.6E-26 197.9 10.8 155 63-229 36-255 (617)
351 KOG0055 Multidrug/pheromone ex 99.9 6.1E-22 1.3E-26 204.9 9.7 164 52-230 987-1213(1228)
352 KOG0056 Heavy metal exporter H 99.9 5.9E-22 1.3E-26 187.9 8.8 164 52-231 537-762 (790)
353 cd03270 ABC_UvrA_I The excisio 99.9 3E-21 6.6E-26 170.8 11.0 63 149-223 149-226 (226)
354 PLN03232 ABC transporter C fam 99.9 2.2E-21 4.7E-26 210.4 12.2 163 52-229 614-827 (1495)
355 PRK04296 thymidine kinase; Pro 99.9 2.3E-20 5E-25 161.1 16.2 179 78-258 2-188 (190)
356 COG1101 PhnK ABC-type uncharac 99.8 1.5E-21 3.2E-26 168.9 8.1 159 52-222 1-230 (263)
357 KOG0059 Lipid exporter ABCA1 a 99.8 1.3E-21 2.8E-26 202.9 9.2 174 51-236 563-793 (885)
358 PLN03140 ABC transporter G fam 99.8 4.8E-21 1E-25 206.4 13.6 163 52-226 867-1106(1470)
359 PLN03130 ABC transporter C fam 99.8 4.1E-21 8.9E-26 209.1 12.2 163 52-229 614-827 (1622)
360 COG1435 Tdk Thymidine kinase [ 99.8 4.4E-21 9.6E-26 163.7 9.6 183 77-259 3-193 (201)
361 TIGR00957 MRP_assoc_pro multi 99.8 6E-21 1.3E-25 207.3 12.1 166 52-229 636-849 (1522)
362 TIGR01187 potA spermidine/putr 99.8 2.6E-21 5.6E-26 180.0 6.3 73 149-231 112-191 (325)
363 KOG0062 ATPase component of AB 99.8 2.6E-21 5.6E-26 184.4 3.4 167 52-229 80-284 (582)
364 TIGR01271 CFTR_protein cystic 99.8 3.1E-20 6.6E-25 201.4 12.0 161 53-229 429-635 (1490)
365 TIGR00956 3a01205 Pleiotropic 99.8 3.4E-20 7.4E-25 199.8 11.2 154 64-228 73-298 (1394)
366 PLN03140 ABC transporter G fam 99.8 4.2E-20 9E-25 199.2 11.1 71 149-229 348-426 (1470)
367 PTZ00243 ABC transporter; Prov 99.8 5.6E-20 1.2E-24 199.8 11.1 156 60-229 668-869 (1560)
368 KOG0061 Transporter, ABC super 99.8 1E-19 2.2E-24 182.0 11.0 166 52-229 25-259 (613)
369 KOG0927 Predicted transporter 99.8 2E-19 4.3E-24 172.5 8.2 167 52-229 75-308 (614)
370 cd03279 ABC_sbcCD SbcCD and ot 99.8 1E-18 2.3E-23 153.1 11.9 149 52-217 5-208 (213)
371 COG4170 SapD ABC-type antimicr 99.8 8.2E-19 1.8E-23 151.7 10.5 170 51-231 2-249 (330)
372 COG4138 BtuD ABC-type cobalami 99.8 1.1E-19 2.3E-24 153.1 4.0 173 52-243 3-231 (248)
373 KOG0054 Multidrug resistance-a 99.8 5.1E-19 1.1E-23 186.6 10.0 164 52-229 1138-1361(1381)
374 cd03278 ABC_SMC_barmotin Barmo 99.8 1.5E-18 3.3E-23 150.5 10.3 134 69-217 14-190 (197)
375 KOG0927 Predicted transporter 99.8 1.9E-19 4E-24 172.7 4.9 155 50-217 387-581 (614)
376 COG4778 PhnL ABC-type phosphon 99.8 2.8E-18 6.1E-23 143.9 11.1 154 52-217 4-227 (235)
377 COG5265 ATM1 ABC-type transpor 99.8 2.3E-18 5.1E-23 161.2 10.3 164 52-229 262-485 (497)
378 COG4133 CcmA ABC-type transpor 99.8 1.7E-18 3.7E-23 147.0 8.6 142 52-195 2-193 (209)
379 cd03271 ABC_UvrA_II The excisi 99.8 3.6E-18 7.8E-23 154.3 10.8 65 149-225 181-261 (261)
380 cd03274 ABC_SMC4_euk Eukaryoti 99.7 9.1E-18 2E-22 147.4 9.1 145 53-217 6-204 (212)
381 COG4615 PvdE ABC-type sideroph 99.7 4.7E-18 1E-22 158.2 7.2 159 52-222 322-529 (546)
382 COG1129 MglA ABC-type sugar tr 99.7 5.5E-17 1.2E-21 156.7 11.7 163 49-227 260-487 (500)
383 cd03272 ABC_SMC3_euk Eukaryoti 99.7 5.8E-17 1.3E-21 144.1 10.2 56 149-217 170-235 (243)
384 KOG0054 Multidrug resistance-a 99.7 9.6E-17 2.1E-21 169.6 12.7 167 49-229 515-730 (1381)
385 cd03284 ABC_MutS1 MutS1 homolo 99.7 3.3E-16 7.1E-21 137.9 12.8 151 64-229 17-180 (216)
386 cd03285 ABC_MSH2_euk MutS2 hom 99.7 2.5E-16 5.4E-21 139.2 11.9 148 63-224 15-175 (222)
387 TIGR00630 uvra excinuclease AB 99.7 1.7E-16 3.6E-21 164.3 11.1 68 149-228 840-923 (924)
388 cd03240 ABC_Rad50 The catalyti 99.7 3.5E-16 7.5E-21 136.5 11.0 58 149-217 133-197 (204)
389 cd03243 ABC_MutS_homologs The 99.7 3.2E-16 7E-21 136.1 10.6 143 70-228 21-177 (202)
390 PF00005 ABC_tran: ABC transpo 99.7 1.3E-16 2.7E-21 129.4 7.5 36 68-104 1-36 (137)
391 cd03283 ABC_MutS-like MutS-lik 99.7 6.6E-16 1.4E-20 134.3 11.7 124 64-197 13-153 (199)
392 cd03280 ABC_MutS2 MutS2 homolo 99.7 6.2E-16 1.4E-20 134.2 11.1 133 67-222 16-171 (200)
393 KOG0065 Pleiotropic drug resis 99.6 1.1E-16 2.3E-21 166.6 6.2 167 52-229 787-1020(1391)
394 KOG0066 eIF2-interacting prote 99.6 2.6E-16 5.7E-21 148.2 7.5 148 49-197 583-766 (807)
395 PRK00635 excinuclease ABC subu 99.6 5E-16 1.1E-20 167.9 10.5 69 149-229 821-905 (1809)
396 PRK00349 uvrA excinuclease ABC 99.6 9.8E-16 2.1E-20 158.9 11.8 69 149-229 842-926 (943)
397 cd03282 ABC_MSH4_euk MutS4 hom 99.6 2.8E-15 6.1E-20 130.9 12.5 130 63-197 14-156 (204)
398 COG4178 ABC-type uncharacteriz 99.6 2.1E-15 4.5E-20 148.5 11.6 144 50-196 390-578 (604)
399 COG1245 Predicted ATPase, RNas 99.6 4.7E-15 1E-19 140.3 13.2 155 51-217 341-531 (591)
400 KOG2355 Predicted ABC-type tra 99.6 1E-14 2.2E-19 125.9 14.2 161 51-222 12-229 (291)
401 cd03276 ABC_SMC6_euk Eukaryoti 99.6 1.4E-15 3E-20 132.2 8.6 58 149-217 121-190 (198)
402 cd03275 ABC_SMC1_euk Eukaryoti 99.6 7.4E-15 1.6E-19 131.5 11.8 57 149-217 167-233 (247)
403 cd03273 ABC_SMC2_euk Eukaryoti 99.6 1.4E-14 3.1E-19 129.8 11.4 55 149-216 178-242 (251)
404 TIGR02858 spore_III_AA stage I 99.6 1.3E-14 2.8E-19 131.8 11.1 146 79-229 112-268 (270)
405 cd03227 ABC_Class2 ABC-type Cl 99.5 6.1E-14 1.3E-18 117.8 11.5 132 69-217 12-155 (162)
406 COG3845 ABC-type uncharacteriz 99.5 1E-13 2.2E-18 132.5 13.1 168 50-229 255-491 (501)
407 KOG0062 ATPase component of AB 99.5 3.9E-14 8.5E-19 135.7 9.8 157 50-219 360-557 (582)
408 cd03287 ABC_MSH3_euk MutS3 hom 99.5 1.5E-13 3.2E-18 121.5 12.1 129 64-196 17-158 (222)
409 cd03239 ABC_SMC_head The struc 99.5 1.6E-13 3.4E-18 117.4 11.8 57 149-217 106-172 (178)
410 KOG0060 Long-chain acyl-CoA tr 99.5 1.9E-13 4.1E-18 132.5 13.3 153 51-217 432-641 (659)
411 KOG0066 eIF2-interacting prote 99.5 1.9E-14 4.1E-19 135.8 4.2 158 53-221 265-489 (807)
412 cd03286 ABC_MSH6_euk MutS6 hom 99.4 1.8E-12 4E-17 114.3 11.4 131 63-197 15-158 (218)
413 smart00534 MUTSac ATPase domai 99.4 6.9E-13 1.5E-17 113.8 7.4 114 80-196 1-126 (185)
414 cd03281 ABC_MSH5_euk MutS5 hom 99.4 1.5E-12 3.3E-17 114.3 9.0 125 66-197 17-159 (213)
415 cd03277 ABC_SMC5_euk Eukaryoti 99.4 6.5E-12 1.4E-16 110.3 12.8 57 151-217 144-209 (213)
416 COG2401 ABC-type ATPase fused 99.4 3.1E-12 6.7E-17 120.3 10.9 140 65-216 396-583 (593)
417 KOG0064 Peroxisomal long-chain 99.4 1.9E-12 4.1E-17 124.6 8.8 142 52-196 481-673 (728)
418 COG1245 Predicted ATPase, RNas 99.3 1.9E-12 4.1E-17 122.9 7.1 58 149-217 225-288 (591)
419 COG0178 UvrA Excinuclease ATPa 99.3 5.6E-12 1.2E-16 126.4 8.6 63 155-229 843-918 (935)
420 PRK00635 excinuclease ABC subu 99.3 7.2E-12 1.6E-16 136.2 9.1 62 156-229 1721-1795(1809)
421 cd03241 ABC_RecN RecN ATPase i 99.3 2.8E-11 6.1E-16 110.2 10.7 50 155-217 192-247 (276)
422 PRK08533 flagellar accessory p 99.2 4.4E-11 9.5E-16 106.3 10.0 152 53-217 8-185 (230)
423 TIGR02788 VirB11 P-type DNA tr 99.2 2.2E-11 4.9E-16 112.6 7.8 140 71-229 137-280 (308)
424 TIGR01069 mutS2 MutS2 family p 99.2 9.3E-11 2E-15 120.3 10.4 141 52-196 295-449 (771)
425 cd01120 RecA-like_NTPases RecA 99.1 7.3E-10 1.6E-14 90.7 11.3 135 80-216 1-164 (165)
426 PRK13695 putative NTPase; Prov 99.1 5.2E-10 1.1E-14 94.8 9.6 59 150-220 91-154 (174)
427 PRK07721 fliI flagellum-specif 99.1 5.6E-10 1.2E-14 107.7 10.3 146 64-228 145-341 (438)
428 PRK06067 flagellar accessory p 99.0 1.5E-09 3.3E-14 96.1 9.4 139 75-217 22-187 (234)
429 cd01131 PilT Pilus retraction 99.0 1.4E-09 3E-14 94.4 8.7 107 80-196 3-113 (198)
430 cd01124 KaiC KaiC is a circadi 99.0 8.7E-10 1.9E-14 93.5 6.8 136 80-217 1-164 (187)
431 cd00820 PEPCK_HprK Phosphoenol 99.0 7.9E-10 1.7E-14 86.8 5.2 35 65-100 2-36 (107)
432 cd03242 ABC_RecF RecF is a rec 99.0 6.3E-09 1.4E-13 94.5 11.6 32 67-100 11-42 (270)
433 PRK00409 recombination and DNA 99.0 2.8E-09 6.1E-14 109.7 10.1 137 71-221 319-469 (782)
434 KOG0065 Pleiotropic drug resis 98.9 2.5E-09 5.5E-14 112.4 7.7 154 65-229 128-350 (1391)
435 PRK05399 DNA mismatch repair p 98.9 1.6E-08 3.5E-13 105.1 11.6 127 65-196 595-734 (854)
436 COG3910 Predicted ATPase [Gene 98.8 9.5E-09 2.1E-13 88.0 7.0 42 154-196 145-192 (233)
437 TIGR03881 KaiC_arch_4 KaiC dom 98.8 3E-08 6.5E-13 87.4 9.8 142 74-217 16-189 (229)
438 PF02463 SMC_N: RecF/RecN/SMC 98.8 8.8E-08 1.9E-12 83.8 12.7 52 153-217 156-213 (220)
439 PF00488 MutS_V: MutS domain V 98.8 2.7E-08 5.9E-13 88.7 9.6 129 65-196 30-170 (235)
440 cd01130 VirB11-like_ATPase Typ 98.8 3.1E-08 6.6E-13 85.0 8.9 119 70-193 17-136 (186)
441 TIGR00416 sms DNA repair prote 98.7 8.9E-08 1.9E-12 93.2 10.5 135 74-217 90-245 (454)
442 PRK00349 uvrA excinuclease ABC 98.7 3.2E-08 7E-13 103.4 6.3 69 149-229 501-584 (943)
443 TIGR01420 pilT_fam pilus retra 98.6 1.1E-07 2.3E-12 89.5 8.8 112 76-196 120-234 (343)
444 TIGR00630 uvra excinuclease AB 98.6 3.7E-08 8.1E-13 102.8 6.3 69 149-229 499-582 (924)
445 KOG0063 RNAse L inhibitor, ABC 98.6 1.5E-07 3.2E-12 89.4 9.6 147 60-217 343-532 (592)
446 TIGR03238 dnd_assoc_3 dnd syst 98.6 2.2E-08 4.9E-13 96.8 2.7 31 66-97 20-50 (504)
447 cd01122 GP4d_helicase GP4d_hel 98.6 5.1E-07 1.1E-11 81.4 11.0 152 66-217 18-228 (271)
448 TIGR00767 rho transcription te 98.5 3.3E-07 7.1E-12 87.3 9.4 51 51-102 129-191 (415)
449 smart00382 AAA ATPases associa 98.5 5.8E-07 1.3E-11 70.5 9.3 26 77-103 1-26 (148)
450 cd01121 Sms Sms (bacterial rad 98.5 4.9E-07 1.1E-11 85.8 10.1 135 74-217 78-233 (372)
451 TIGR02655 circ_KaiC circadian 98.5 4E-07 8.7E-12 89.3 8.2 140 75-217 18-191 (484)
452 TIGR01070 mutS1 DNA mismatch r 98.4 9.2E-07 2E-11 91.9 10.5 127 65-196 580-719 (840)
453 PRK09183 transposase/IS protei 98.4 2.6E-07 5.7E-12 83.5 5.6 44 67-112 92-136 (259)
454 PRK13830 conjugal transfer pro 98.4 3.4E-06 7.4E-11 87.7 14.4 70 152-223 649-726 (818)
455 TIGR01026 fliI_yscN ATPase Fli 98.4 5.4E-07 1.2E-11 87.2 7.1 38 64-103 150-187 (440)
456 PRK06995 flhF flagellar biosyn 98.4 6.8E-07 1.5E-11 87.3 7.6 49 67-116 245-296 (484)
457 cd01394 radB RadB. The archaea 98.4 1.2E-06 2.6E-11 76.6 8.2 140 75-217 16-186 (218)
458 TIGR03880 KaiC_arch_3 KaiC dom 98.4 1.8E-06 3.9E-11 75.9 9.3 141 74-217 12-178 (224)
459 PRK11823 DNA repair protein Ra 98.4 1.7E-06 3.6E-11 84.1 9.9 136 74-216 76-230 (446)
460 PRK06793 fliI flagellum-specif 98.4 2.7E-06 5.8E-11 82.1 11.0 140 52-193 130-287 (432)
461 PTZ00132 GTP-binding nuclear p 98.4 8.3E-07 1.8E-11 77.4 6.3 35 145-179 160-205 (215)
462 PRK14722 flhF flagellar biosyn 98.3 9.9E-07 2.2E-11 83.6 6.4 49 66-115 125-176 (374)
463 cd00009 AAA The AAA+ (ATPases 98.3 2E-06 4.2E-11 68.2 7.3 104 77-193 18-131 (151)
464 PF13555 AAA_29: P-loop contai 98.3 7.9E-07 1.7E-11 63.0 4.0 31 70-101 14-45 (62)
465 PRK13764 ATPase; Provisional 98.3 7.9E-06 1.7E-10 81.8 12.5 137 75-224 254-399 (602)
466 cd01125 repA Hexameric Replica 98.3 1.3E-05 2.9E-10 71.2 12.2 64 153-217 109-190 (239)
467 PF09818 ABC_ATPase: Predicted 98.2 1.1E-05 2.4E-10 77.2 11.8 148 58-219 227-416 (448)
468 PRK06002 fliI flagellum-specif 98.2 1.7E-06 3.6E-11 83.7 6.2 52 51-104 138-190 (450)
469 TIGR02237 recomb_radB DNA repa 98.2 4E-06 8.6E-11 72.7 8.0 118 75-192 9-150 (209)
470 cd00984 DnaB_C DnaB helicase C 98.2 6.8E-06 1.5E-10 72.7 9.7 144 74-217 9-207 (242)
471 PF13401 AAA_22: AAA domain; P 98.2 1.1E-06 2.5E-11 69.9 4.2 113 76-191 2-125 (131)
472 PF13481 AAA_25: AAA domain; P 98.2 9.6E-06 2.1E-10 69.1 10.1 118 75-192 29-189 (193)
473 cd01123 Rad51_DMC1_radA Rad51_ 98.2 3.9E-06 8.5E-11 73.9 7.5 119 75-193 16-171 (235)
474 TIGR02524 dot_icm_DotB Dot/Icm 98.2 8.2E-06 1.8E-10 77.2 9.9 109 76-194 132-249 (358)
475 PRK13898 type IV secretion sys 98.2 1.6E-05 3.4E-10 82.7 12.7 65 151-217 638-709 (800)
476 PRK10416 signal recognition pa 98.2 1E-05 2.2E-10 75.4 9.9 40 75-115 111-151 (318)
477 PRK13891 conjugal transfer pro 98.2 2.5E-05 5.5E-10 81.6 13.6 65 150-216 682-753 (852)
478 PRK07196 fliI flagellum-specif 98.2 1.6E-06 3.4E-11 83.7 4.0 39 64-104 142-180 (434)
479 PRK09361 radB DNA repair and r 98.1 1.3E-05 2.8E-10 70.4 9.4 118 75-192 20-162 (225)
480 PRK14721 flhF flagellar biosyn 98.1 8.3E-06 1.8E-10 78.5 8.6 40 75-115 188-230 (420)
481 PLN03210 Resistant to P. syrin 98.1 6.3E-06 1.4E-10 88.7 8.4 131 71-216 200-349 (1153)
482 cd01128 rho_factor Transcripti 98.1 8.7E-06 1.9E-10 73.3 7.8 31 71-102 9-39 (249)
483 TIGR00235 udk uridine kinase. 98.1 2.1E-06 4.6E-11 74.7 3.7 27 76-103 4-30 (207)
484 PRK06731 flhF flagellar biosyn 98.1 7.7E-06 1.7E-10 74.5 7.4 62 53-115 41-112 (270)
485 cd01129 PulE-GspE PulE/GspE Th 98.1 3.2E-05 6.9E-10 70.2 11.4 108 76-194 78-186 (264)
486 PRK14723 flhF flagellar biosyn 98.1 5.6E-06 1.2E-10 84.6 7.1 48 67-115 174-224 (767)
487 cd01393 recA_like RecA is a b 98.1 1.8E-05 4E-10 69.2 9.1 120 75-195 16-172 (226)
488 PF00004 AAA: ATPase family as 98.1 2.3E-05 4.9E-10 62.0 8.2 21 81-102 1-21 (132)
489 PRK07594 type III secretion sy 98.0 4E-06 8.7E-11 80.9 4.4 53 52-106 129-182 (433)
490 PF13173 AAA_14: AAA domain 98.0 2.2E-05 4.7E-10 63.1 8.0 100 78-195 2-102 (128)
491 PRK09302 circadian clock prote 98.0 1.5E-05 3.1E-10 78.8 8.3 141 75-217 28-201 (509)
492 PF06745 KaiC: KaiC; InterPro 98.0 1.7E-05 3.7E-10 69.7 7.6 140 75-217 16-185 (226)
493 PRK10078 ribose 1,5-bisphospho 98.0 4E-06 8.6E-11 71.8 3.3 25 78-103 2-26 (186)
494 PRK06893 DNA replication initi 98.0 3E-05 6.4E-10 68.8 8.6 87 79-192 40-134 (229)
495 TIGR01526 nadR_NMN_Atrans nico 98.0 8.9E-06 1.9E-10 76.0 5.5 32 70-102 152-185 (325)
496 KOG0063 RNAse L inhibitor, ABC 98.0 8.1E-06 1.7E-10 77.8 5.1 48 149-197 225-278 (592)
497 PF13476 AAA_23: AAA domain; P 98.0 6.9E-06 1.5E-10 69.7 4.2 31 68-100 10-40 (202)
498 PRK09825 idnK D-gluconate kina 98.0 4.7E-06 1E-10 71.1 3.1 25 77-102 2-26 (176)
499 PRK13873 conjugal transfer ATP 98.0 9.3E-05 2E-09 77.1 13.2 64 152-217 632-702 (811)
500 cd01136 ATPase_flagellum-secre 98.0 8.6E-06 1.9E-10 76.0 4.9 45 58-104 49-94 (326)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-38 Score=274.40 Aligned_cols=171 Identities=19% Similarity=0.196 Sum_probs=138.4
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC-------Cccccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS-------NKDTRYGL 122 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~-------~~~~~~~~ 122 (280)
++|+++||+|+||+..+|+|||++|.+||+++|+||||||||||| |+|++|.. ++..|.+-.. -...|..+
T Consensus 1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlL-RclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLL-RCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHH-HHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 379999999999999999999999999999999999999999999 99999843 3333332221 12236667
Q ss_pred ceeeeeccccccc----------------------------ccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563 123 DSIVTHDGVKLPC----------------------------CALTTLSSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 123 ~~v~~~~~~~~~~----------------------------~~~~~l~~~~~~~--------------a~aL~~~p~lLl 160 (280)
+.+||+.+++... +..+++.+.++.| ||||+.+|+++|
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmL 159 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVML 159 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEe
Confidence 8888876643221 2233444444433 689999999999
Q ss_pred EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeec
Q 023563 161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKT 233 (280)
Q Consensus 161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~ 233 (280)
+||||+++ ++++.+++++++ |.|+|+|||++.+|.+ +||||++|++ +++..|+|++++.++.
T Consensus 160 FDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHEM~FAr~----------VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 160 FDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGFARE----------VADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEechhHHHHH----------hhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 99999986 489999999997 9999999999999997 9999999999 8999999999995443
No 2
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.6e-38 Score=284.01 Aligned_cols=179 Identities=22% Similarity=0.286 Sum_probs=144.4
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------C------------CeeEEE
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------K------------GRNVAV 111 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~------------g~~i~~ 111 (280)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. + .+.++|
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLL-k~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLL-KCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHH-HHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 68999999999999999999999999999999999999999999 99999621 2 346788
Q ss_pred ecCCccccccc--ceeeee-----cc-----------cccccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563 112 IKSNKDTRYGL--DSIVTH-----DG-----------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVI 159 (280)
Q Consensus 112 ~~~~~~~~~~~--~~v~~~-----~~-----------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lL 159 (280)
++|......++ ..++.. .. ....++...++.+++++. |+||+++|++|
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iL 160 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPIL 160 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEE
Confidence 88875433221 111110 00 011223445566665554 78999999999
Q ss_pred EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563 160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK 232 (280)
Q Consensus 160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~ 232 (280)
||||||+.+ +++++++++++++|+|||+++||++.|.+ +||++++|++ ++++.|+|++++
T Consensus 161 LLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~r----------yad~~i~lk~G~i~a~G~p~evl--- 227 (258)
T COG1120 161 LLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAAR----------YADHLILLKDGKIVAQGTPEEVL--- 227 (258)
T ss_pred EeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH----------hCCEEEEEECCeEEeecCcchhc---
Confidence 999998765 58999999998889999999999999997 9999999999 999999999999
Q ss_pred cCCCcEEEeCCc
Q 023563 233 TEETKTELIGGS 244 (280)
Q Consensus 233 ~~~~~~~~~~~~ 244 (280)
+.+.+.++|+..
T Consensus 228 T~e~l~~Vygv~ 239 (258)
T COG1120 228 TEENLREVYGVD 239 (258)
T ss_pred CHHHHHHHhCCc
Confidence 888888888754
No 3
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.7e-37 Score=273.42 Aligned_cols=184 Identities=22% Similarity=0.256 Sum_probs=146.3
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------C---------CeeEEEec
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------K---------GRNVAVIK 113 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~---------g~~i~~~~ 113 (280)
++|+++|+++.|++++||+||||+|++|++++|+||||||||||+ ++|.|+.. . +..|+|++
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLl-K~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLL-KAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 579999999999976899999999999999999999999999999 99999621 1 24688998
Q ss_pred CCcc--ccccc--ceeee-----ec-----------ccccccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563 114 SNKD--TRYGL--DSIVT-----HD-----------GVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVI 159 (280)
Q Consensus 114 ~~~~--~~~~~--~~v~~-----~~-----------~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lL 159 (280)
|... ..+++ ..++. +. .....++..+++.+++++. ||||+++|++|
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ll 161 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLL 161 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEE
Confidence 8653 22222 11111 11 1123345566777776655 88999999999
Q ss_pred EEeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeec
Q 023563 160 GIDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKT 233 (280)
Q Consensus 160 lLDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~ 233 (280)
+||||+. +.+++++|++++++ |+||++||||++.+.+ +||+|++|+.++++.|++++++ +
T Consensus 162 lLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~----------~~D~vi~Ln~~~~~~G~~~~~~---~ 227 (254)
T COG1121 162 LLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMA----------YFDRVICLNRHLIASGPPEEVL---T 227 (254)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHh----------hCCEEEEEcCeeEeccChhhcc---C
Confidence 9999954 45699999999998 9999999999999987 9999999999999999999999 7
Q ss_pred CCCcEEEeCCccceee
Q 023563 234 EETKTELIGGSDIYMP 249 (280)
Q Consensus 234 ~~~~~~~~~~~~~~~~ 249 (280)
.+++...|++......
T Consensus 228 ~~~l~~~~g~~~~~~~ 243 (254)
T COG1121 228 EENLEKAFGGSLAHAL 243 (254)
T ss_pred HHHHHHHhCccchhee
Confidence 7777777775444333
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-36 Score=264.41 Aligned_cols=183 Identities=19% Similarity=0.248 Sum_probs=147.4
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYGLD 123 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~~~ 123 (280)
||+++||||.|+++.+++|+||+|++||+++|+|||||||||+| ++|+++.. +|.++.-... ...|..++
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtL-kMINrLiept~G~I~i~g~~i~~~d~-~~LRr~IG 78 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTL-KMINRLIEPTSGEILIDGEDISDLDP-VELRRKIG 78 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHH-HHHhcccCCCCceEEECCeecccCCH-HHHHHhhh
Confidence 68999999999999999999999999999999999999999999 99999833 4444432211 23466778
Q ss_pred eeeeeccccccc---------------------------ccccCc--hHHHHHH--------------hhhhccCCCEEE
Q 023563 124 SIVTHDGVKLPC---------------------------CALTTL--SSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 124 ~v~~~~~~~~~~---------------------------~~~~~l--~~~~~~~--------------a~aL~~~p~lLl 160 (280)
|+.|+.+++... +.+.++ .++.+|+ +|||+.+|++||
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL 158 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL 158 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe
Confidence 888765542211 122333 2345544 689999999999
Q ss_pred EeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeec
Q 023563 161 IDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKT 233 (280)
Q Consensus 161 LDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~ 233 (280)
||||+. +..+.+.++++.++.|+|||+||||+++|.+ ++|||.+|++ +++..++|+++..++.
T Consensus 159 MDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~k----------Ladri~vm~~G~i~Q~~~P~~il~~Pa 228 (309)
T COG1125 159 MDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALK----------LADRIAVMDAGEIVQYDTPDEILANPA 228 (309)
T ss_pred ecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHh----------hhceEEEecCCeEEEeCCHHHHHhCcc
Confidence 999965 4458889999999999999999999999987 9999999999 9999999999998888
Q ss_pred CCCcEEEeCCccc
Q 023563 234 EETKTELIGGSDI 246 (280)
Q Consensus 234 ~~~~~~~~~~~~~ 246 (280)
++....++|.++.
T Consensus 229 n~FV~~f~g~~~~ 241 (309)
T COG1125 229 NDFVEDFFGESER 241 (309)
T ss_pred HHHHHHHhccccc
Confidence 8777777776644
No 5
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-35 Score=260.03 Aligned_cols=177 Identities=20% Similarity=0.209 Sum_probs=140.3
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCccccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKDTRYGL 122 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~~~~~~ 122 (280)
+++++++|+|+||+..+++||||+|++||+++|||||||||||++ ++|.|+. +.|+++.-++++...+.++
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlf-NlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLF-NLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeee-eeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 579999999999999999999999999999999999999999999 9999973 3566666666666566666
Q ss_pred ceeeeeccccccc---------------------------------------ccccCchHHHHHH--------------h
Q 023563 123 DSIVTHDGVKLPC---------------------------------------CALTTLSSFRQKF--------------G 149 (280)
Q Consensus 123 ~~v~~~~~~~~~~---------------------------------------~~~~~l~~~~~~~--------------a 149 (280)
...||....+... +...++.+.++.. |
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA 161 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA 161 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence 6666532211110 1122333333222 6
Q ss_pred hhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 150 SDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
+||+.+|++||||||... .++.+.|++++++.|.||++|.|||+.+.+ +||||++|+. ++++.
T Consensus 162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~----------l~dri~Vl~~G~~IAe 231 (250)
T COG0411 162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMG----------LADRIVVLNYGEVIAE 231 (250)
T ss_pred HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhh----------hccEEEeccCCcCccc
Confidence 789999999999999543 468999999998768999999999999986 9999999999 99999
Q ss_pred cCcceeeeeecCCCcEEEe
Q 023563 223 GKRAFFTLRKTEETKTELI 241 (280)
Q Consensus 223 g~~~~~~~~~~~~~~~~~~ 241 (280)
|+|+++. +++.+.+.|
T Consensus 232 G~P~eV~---~dp~VieAY 247 (250)
T COG0411 232 GTPEEVR---NNPRVIEAY 247 (250)
T ss_pred CCHHHHh---cCHHhHHHh
Confidence 9999998 666555544
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.2e-34 Score=253.45 Aligned_cols=170 Identities=22% Similarity=0.259 Sum_probs=131.1
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCc--ccc
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNK--DTR 119 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~--~~~ 119 (280)
+++|++++|+++||++.+++||||+|++||+++|+||||||||||+ |.|.|+.. .|.++.-+.... ..+
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlL-r~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLL-RLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHH-HHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999 99999732 333333222211 123
Q ss_pred cccceeeeeccccccc----------------------------ccccCchHH-------------HHHH--hhhhccCC
Q 023563 120 YGLDSIVTHDGVKLPC----------------------------CALTTLSSF-------------RQKF--GSDAYDQV 156 (280)
Q Consensus 120 ~~~~~v~~~~~~~~~~----------------------------~~~~~l~~~-------------~~~~--a~aL~~~p 156 (280)
..++.+||+..++... +..+++..- .+|. |||++.+|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP 164 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP 164 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence 4455666643322111 111222111 1111 68999999
Q ss_pred CEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++|++||||+.+| +-++|+++++..|.|+++||||++.+.. +|||+++|.+ +++++|+++++.
T Consensus 165 ell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~----------i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 165 ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLT----------IADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred CEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHh----------hhceEEEEeCCEEEEeCCHHHHH
Confidence 9999999988764 7889999999999999999999999986 9999999999 999999999997
Q ss_pred e
Q 023563 230 L 230 (280)
Q Consensus 230 ~ 230 (280)
.
T Consensus 235 ~ 235 (263)
T COG1127 235 A 235 (263)
T ss_pred h
Confidence 3
No 7
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=269.66 Aligned_cols=180 Identities=18% Similarity=0.196 Sum_probs=143.9
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCccccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKDTRYGL 122 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~~~~~~ 122 (280)
+.++++||+|+||+..+++|+||+|++||+++|+||||||||||| |+|+|+. ++|+++..++++ +.++
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlL-R~IAGfe~p~~G~I~l~G~~i~~lpp~---kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLL-RMIAGFEQPSSGEILLDGEDITDVPPE---KRPI 79 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCCCChh---hccc
Confidence 479999999999999999999999999999999999999999999 9999983 355666555443 4455
Q ss_pred ceeeeecccc----------------------------cccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563 123 DSIVTHDGVK----------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 123 ~~v~~~~~~~----------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl 160 (280)
+.|||...++ .+++.+.++..+.+++ ||||+.+|++||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLL 159 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLL 159 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence 6666532211 1123344555555444 689999999999
Q ss_pred EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeec
Q 023563 161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKT 233 (280)
Q Consensus 161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~ 233 (280)
||||.+.+ ++...++++.++.|+|.|+||||.++|.. ++|||.+|++ ++...|+|+++..++.
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~----------msDrI~Vm~~G~I~Q~gtP~eiY~~P~ 229 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALA----------MSDRIAVMNDGRIEQVGTPEEIYERPA 229 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhh----------hccceEEccCCceeecCCHHHHhhCcc
Confidence 99996654 47888899998899999999999999975 9999999999 9999999999997776
Q ss_pred CCCcEEEeCCc
Q 023563 234 EETKTELIGGS 244 (280)
Q Consensus 234 ~~~~~~~~~~~ 244 (280)
+.....++|..
T Consensus 230 ~~fVA~FiG~~ 240 (352)
T COG3842 230 TRFVADFIGES 240 (352)
T ss_pred hHHHHHHhCcc
Confidence 66666666543
No 8
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-34 Score=259.70 Aligned_cols=172 Identities=20% Similarity=0.236 Sum_probs=142.0
Q ss_pred cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCc--
Q 023563 52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNK-- 116 (280)
Q Consensus 52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~-- 116 (280)
||++++|+|.|.. ..+|+||||+|++||++||+|.||||||||+ |+++++. ++|.++.-+....
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLi-R~iN~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLL-RLINLLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHH-HHHhccCCCCCceEEEcCEecccCChHHHH
Confidence 6899999999975 5799999999999999999999999999999 9999983 3555555443322
Q ss_pred ccccccceeeeeccccccc---------------------------ccccCchHHHHHH--------------hhhhccC
Q 023563 117 DTRYGLDSIVTHDGVKLPC---------------------------CALTTLSSFRQKF--------------GSDAYDQ 155 (280)
Q Consensus 117 ~~~~~~~~v~~~~~~~~~~---------------------------~~~~~l~~~~~~~--------------a~aL~~~ 155 (280)
..|..++++||+.+++... +.++++.+..+++ ||||+.+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~ 159 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN 159 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence 2366778888876654321 3345555555554 7899999
Q ss_pred CCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 156 VDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 156 p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
|++||.||||+++| ++++|+++.++.|.||+++||.|+.+.+ +||||.+|+. +++..|+..++
T Consensus 160 P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~----------ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 160 PKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKR----------ICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred CCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHH----------HhhhheEeeCCEEEEeccHHHh
Confidence 99999999998764 9999999999999999999999999997 9999999999 99999999999
Q ss_pred eeeecC
Q 023563 229 TLRKTE 234 (280)
Q Consensus 229 ~~~~~~ 234 (280)
+..+..
T Consensus 230 F~~Pk~ 235 (339)
T COG1135 230 FANPKH 235 (339)
T ss_pred hcCcch
Confidence 855433
No 9
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-33 Score=243.87 Aligned_cols=154 Identities=21% Similarity=0.207 Sum_probs=116.5
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------C-------CeeEEEecCCc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------K-------GRNVAVIKSNK 116 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~-------g~~i~~~~~~~ 116 (280)
+++++++++.|++..||+||||+|.+||+++|+||||||||||+ ++++|+.. . +.++++++|+.
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLL-riiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLL-RLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 68999999999999999999999999999999999999999999 99999832 1 22344444443
Q ss_pred ccccccceeeee---------------cccccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH
Q 023563 117 DTRYGLDSIVTH---------------DGVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF 167 (280)
Q Consensus 117 ~~~~~~~~v~~~---------------~~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~ 167 (280)
... +...+.++ .......+..+++..+.+++ ||||+.+|++||||||..+
T Consensus 82 ~Ll-PW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA 160 (248)
T COG1116 82 ALL-PWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGA 160 (248)
T ss_pred ccc-chhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcch
Confidence 211 10000000 00111223344555555444 6899999999999999665
Q ss_pred H------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 168 E------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 168 ~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
+ .+.+.+.+++++.++||++||||+++|-. ++|||++|.+
T Consensus 161 LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~----------LsdRivvl~~ 206 (248)
T COG1116 161 LDALTREELQDELLRLWEETRKTVLLVTHDVDEAVY----------LADRVVVLSN 206 (248)
T ss_pred hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHh----------hhCEEEEecC
Confidence 4 48889999998889999999999999975 9999999988
No 10
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-34 Score=247.45 Aligned_cols=177 Identities=22% Similarity=0.275 Sum_probs=134.6
Q ss_pred ccEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCC--cccc
Q 023563 51 SMVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSN--KDTR 119 (280)
Q Consensus 51 ~~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~--~~~~ 119 (280)
++|+++||++.| +++.+|+||||+|++||+++|+||||||||||| |+|.|+.- +|.++.-+... ...|
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLL-R~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLL-RSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHH-HHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 489999999999 889999999999999999999999999999999 99999732 22222111111 1124
Q ss_pred cccceeeeeccccc-----------------------------------ccccccCchHHHHHH--------------hh
Q 023563 120 YGLDSIVTHDGVKL-----------------------------------PCCALTTLSSFRQKF--------------GS 150 (280)
Q Consensus 120 ~~~~~v~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~--------------a~ 150 (280)
..++++||+.++.. .++...++.+.+-+. ||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence 44556665433221 122333444333222 68
Q ss_pred hhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
||+++|++||.|||++. ..+++.|++++++.|.|+|+..|+++.|.+ |||||+-|++ +++++|
T Consensus 161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~----------Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKK----------YADRIIGLKAGRIVFDG 230 (258)
T ss_pred HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHH----------HHhhheEecCCcEEEeC
Confidence 99999999999999654 459999999999889999999999999997 9999999999 999999
Q ss_pred CcceeeeeecCCCcEEEeC
Q 023563 224 KRAFFTLRKTEETKTELIG 242 (280)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~ 242 (280)
+++++. ++.+.++||
T Consensus 231 ~~~el~----~~~~~~iYg 245 (258)
T COG3638 231 PASELT----DEALDEIYG 245 (258)
T ss_pred Chhhhh----HHHHHHHhc
Confidence 999854 444555555
No 11
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.98 E-value=3.7e-32 Score=238.41 Aligned_cols=169 Identities=14% Similarity=0.107 Sum_probs=126.8
Q ss_pred ccEEEcCceEEeCCee----eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------cc
Q 023563 51 SMVSPRPPLFSLQNRN----LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DT 118 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~----vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~ 118 (280)
++|+++|+++.|+++. +|++|||+|.+||++||+|+||||||||. ++++|+.. ....|.+-.... ..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~-r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLA-RLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHH-HHHhcccCCCCceEEECCcccCccccchhh
Confidence 4899999999998877 99999999999999999999999999999 99999843 222232222111 11
Q ss_pred ccccceeeeecccc---------------------------cccccccCc-hHHHHHH--------------hhhhccCC
Q 023563 119 RYGLDSIVTHDGVK---------------------------LPCCALTTL-SSFRQKF--------------GSDAYDQV 156 (280)
Q Consensus 119 ~~~~~~v~~~~~~~---------------------------~~~~~~~~l-~~~~~~~--------------a~aL~~~p 156 (280)
...+..+||..... ...+..+++ ..+++++ ||||+.+|
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P 160 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP 160 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence 22334444421100 011111222 1122221 68999999
Q ss_pred CEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++||+|||++.+| ++++|.++.+++|.|+|+||||+..+.. +||||++|++ .++..++..++.
T Consensus 161 klLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~----------~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 161 KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEH----------MCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred CEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHH----------HhhheeeeeCCeEEEeechhhhh
Confidence 9999999988764 8999999999999999999999999997 9999999999 999999998887
Q ss_pred e
Q 023563 230 L 230 (280)
Q Consensus 230 ~ 230 (280)
.
T Consensus 231 ~ 231 (252)
T COG1124 231 S 231 (252)
T ss_pred c
Confidence 3
No 12
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.97 E-value=4.7e-32 Score=250.08 Aligned_cols=170 Identities=19% Similarity=0.170 Sum_probs=123.2
Q ss_pred CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-----cccccc
Q 023563 49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-----DTRYGL 122 (280)
Q Consensus 49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-----~~~~~~ 122 (280)
+.++|+++||+|+|+++.+|+||||+|++||++||+||||||||||+ ++|+|+.. ....+.+...+. ..+..+
T Consensus 4 ~~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl-~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 4 SVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTL-RMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred CCceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 34589999999999998999999999999999999999999999999 99999832 222222111100 011223
Q ss_pred ceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563 123 DSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGI 161 (280)
Q Consensus 123 ~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlL 161 (280)
+++++...... ..+...++....++. |+||+.+|++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllL 162 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVL 162 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 33333211100 001112222222111 5689999999999
Q ss_pred eCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563 162 DEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL 230 (280)
Q Consensus 162 DEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~ 230 (280)
|||++.+ .++++|++++++ |+|||++||+++++.+ +||+|++|++ ++++.|+++++..
T Consensus 163 DEPt~gLD~~~~~~l~~~l~~l~~~-g~till~sH~l~e~~~----------~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 163 DEPTTGLDPQARHLMWERLRSLLAR-GKTILLTTHFMEEAER----------LCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHH----------hCCEEEEEECCEEEEECCHHHHHh
Confidence 9997654 588999999765 9999999999999987 9999999999 9999999998863
No 13
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.4e-32 Score=245.13 Aligned_cols=180 Identities=19% Similarity=0.164 Sum_probs=134.4
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEec-------CCcccccccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIK-------SNKDTRYGLD 123 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~-------~~~~~~~~~~ 123 (280)
+|+++|+++.|+...+++||||+|+.||+++|+||||||||||| ++|+|+.. ....|.+-. +.......++
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlL-RiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLL-RIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHH-HHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 68999999999999999999999999999999999999999999 99999833 111211111 1011123455
Q ss_pred eeeeecccc-----------------------------cccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563 124 SIVTHDGVK-----------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 124 ~v~~~~~~~-----------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl 160 (280)
.+||+..++ .+.+...+++.+.+++ ||||+.+|++||
T Consensus 81 fvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLL 160 (345)
T COG1118 81 FVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLL 160 (345)
T ss_pred EEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEe
Confidence 555532211 0112334455555554 689999999999
Q ss_pred EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeec
Q 023563 161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKT 233 (280)
Q Consensus 161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~ 233 (280)
||||...+ ++...|+++.++.|.|+++||||.+++.+ +||||++|++ +|...|+|+++...+.
T Consensus 161 LDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~----------ladrvvvl~~G~Ieqvg~p~ev~~~P~ 230 (345)
T COG1118 161 LDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALE----------LADRVVVLNQGRIEQVGPPDEVYDHPA 230 (345)
T ss_pred ecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHh----------hcceEEEecCCeeeeeCCHHHHhcCCC
Confidence 99996554 57888889988889999999999999987 9999999999 9999999999985544
Q ss_pred CCCcEEEeC
Q 023563 234 EETKTELIG 242 (280)
Q Consensus 234 ~~~~~~~~~ 242 (280)
......+.|
T Consensus 231 s~fV~~f~G 239 (345)
T COG1118 231 SRFVARFLG 239 (345)
T ss_pred ccceecccc
Confidence 443333333
No 14
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.6e-32 Score=251.56 Aligned_cols=177 Identities=19% Similarity=0.195 Sum_probs=139.2
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYGLD 123 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~~~ 123 (280)
+|+++||+|.||+..+++|+||+|+.||+++|+||||||||||| ++|+|+.. .|+++..++|. ..++.
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlL-r~IAGLe~~~~G~I~i~g~~vt~l~P~---~R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLL-RMIAGLEEPTSGEILIDGRDVTDLPPE---KRGIA 78 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCCCChh---HCCEE
Confidence 69999999999987699999999999999999999999999999 99999832 44444433332 33455
Q ss_pred eeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEe
Q 023563 124 SIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGID 162 (280)
Q Consensus 124 ~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLD 162 (280)
.+||...++. +.....++.+++++. ||||+.+|+++|||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~D 158 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLD 158 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEec
Confidence 5555322211 112233455555543 68999999999999
Q ss_pred Cccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeecCC
Q 023563 163 EAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKTEE 235 (280)
Q Consensus 163 EP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~~~ 235 (280)
||.+ +..++..|+++.++.|.|+|+||||..+|.. ++|||.+|++ ++...|+|.++..++.+.
T Consensus 159 EPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmt----------ladri~Vm~~G~i~Q~g~p~ely~~P~n~ 228 (338)
T COG3839 159 EPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMT----------LADRIVVMNDGRIQQVGTPLELYERPANL 228 (338)
T ss_pred CchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHh----------hCCEEEEEeCCeeeecCChHHHhhCccch
Confidence 9966 4458899999999899999999999999975 9999999999 999999999999776666
Q ss_pred CcEEEeC
Q 023563 236 TKTELIG 242 (280)
Q Consensus 236 ~~~~~~~ 242 (280)
....++|
T Consensus 229 fVA~FiG 235 (338)
T COG3839 229 FVAGFIG 235 (338)
T ss_pred hhhhhcC
Confidence 5555555
No 15
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.1e-33 Score=236.01 Aligned_cols=173 Identities=19% Similarity=0.186 Sum_probs=127.1
Q ss_pred cEEEcCceEEeCCee-eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-CeeEEEe-----cCCcccccccce
Q 023563 52 MVSPRPPLFSLQNRN-LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-GRNVAVI-----KSNKDTRYGLDS 124 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~-vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g~~i~~~-----~~~~~~~~~~~~ 124 (280)
||++.+++|+|+... +++||||++++||++||+|||||||||+| ++|+++... ...+..- .+....+..++-
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~L-RmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLL-RMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHH-HHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 689999999999865 99999999999999999999999999999 999997442 2222111 111122333333
Q ss_pred eeeeccccccc---------------------------ccccCchHHHHHH--------------hhhhccCCCEEEEeC
Q 023563 125 IVTHDGVKLPC---------------------------CALTTLSSFRQKF--------------GSDAYDQVDVIGIDE 163 (280)
Q Consensus 125 v~~~~~~~~~~---------------------------~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDE 163 (280)
++...+.+... ....++.+.+++. ||||+++|+++++||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDE 159 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDE 159 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcC
Confidence 33211111110 1122344444333 679999999999999
Q ss_pred cccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeecCCC
Q 023563 164 AQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKTEET 236 (280)
Q Consensus 164 P~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~~~~ 236 (280)
|++++| +.+.+++++++ |++||++||+++++.. +||+|++|+. .+++.|+++++..+....+
T Consensus 160 P~sGLDi~~~r~~~dfi~q~k~e-gr~viFSSH~m~Evea----------lCDrvivlh~Gevv~~gs~~~l~~r~~~~~ 228 (245)
T COG4555 160 PTSGLDIRTRRKFHDFIKQLKNE-GRAVIFSSHIMQEVEA----------LCDRVIVLHKGEVVLEGSIEALDARTVLRN 228 (245)
T ss_pred CCCCccHHHHHHHHHHHHHhhcC-CcEEEEecccHHHHHH----------hhheEEEEecCcEEEcCCHHHHHHHHhhcC
Confidence 987765 67888888887 9999999999999987 9999999999 9999999998875544433
No 16
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.4e-31 Score=245.61 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=124.1
Q ss_pred cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-----ccccccce
Q 023563 52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-----DTRYGLDS 124 (280)
Q Consensus 52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-----~~~~~~~~ 124 (280)
+++++||+|.|+ ++.+|+||||+|++|+++||+||||||||||+ ++|+|+.. .+..+.+...+. ..+..+++
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTll-k~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLL-KILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence 688999999999 69999999999999999999999999999999 99999843 333333332211 11223333
Q ss_pred eeeeccc---------------------------ccccccccCchHHHHH------------H--hhhhccCCCEEEEeC
Q 023563 125 IVTHDGV---------------------------KLPCCALTTLSSFRQK------------F--GSDAYDQVDVIGIDE 163 (280)
Q Consensus 125 v~~~~~~---------------------------~~~~~~~~~l~~~~~~------------~--a~aL~~~p~lLlLDE 163 (280)
+.+.... ....+...++....++ . |.||+.+|++|||||
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE 162 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE 162 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 3332111 0111222233321111 1 568999999999999
Q ss_pred cccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 164 AQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 164 P~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||+.+ +++++|++++++.|+||+++||.++++.+ +||+|++|++ +++++|+++++.
T Consensus 163 Pt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~----------~~d~v~il~~G~~~~~g~~~~l~ 225 (293)
T COG1131 163 PTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEE----------LCDRVIILNDGKIIAEGTPEELK 225 (293)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHH----------hCCEEEEEeCCEEEEeCCHHHHH
Confidence 97654 58999999999744899999999999987 8999999999 999999988865
No 17
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.97 E-value=1.2e-31 Score=250.62 Aligned_cols=169 Identities=20% Similarity=0.187 Sum_probs=123.2
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cccccccc
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLD 123 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~ 123 (280)
.++|+++||+|+|+++.+|+|+||+|++|+++||+||||||||||+ ++|+|+.. ....+.+...+ ...+..++
T Consensus 39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl-~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIA-RMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred ceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 3579999999999999999999999999999999999999999999 99999732 22222221111 01122233
Q ss_pred eeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEe
Q 023563 124 SIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGID 162 (280)
Q Consensus 124 ~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLD 162 (280)
++++...... ..+...++.+..++. |+||+.+|++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD 197 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD 197 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 3333211100 001111222211111 56899999999999
Q ss_pred CcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563 163 EAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL 230 (280)
Q Consensus 163 EP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~ 230 (280)
||++. ..++++|++++++ |+|||++||+++++.+ +||+|++|++ ++++.|+++++..
T Consensus 198 EPt~gLD~~~r~~l~~~l~~l~~~-g~tilisSH~l~e~~~----------~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 198 EPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAER----------LCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHh
Confidence 99765 4589999999875 9999999999999987 9999999999 9999999998863
No 18
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=5.6e-32 Score=235.69 Aligned_cols=168 Identities=18% Similarity=0.222 Sum_probs=136.8
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCeeEEEecCCccccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRNVAVIKSNKDTRYGL 122 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~i~~~~~~~~~~~~~ 122 (280)
+||+++||+..||+..+|+||||++++||+++|+||||+|||||+ +.|.|+ .+.|+++.-++++...+.++
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlL-kti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLL-KTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 589999999999999999999999999999999999999999999 999997 34677777777777777777
Q ss_pred ceeeeeccccccccccc-----------------CchHHHHHH------------------------hhhhccCCCEEEE
Q 023563 123 DSIVTHDGVKLPCCALT-----------------TLSSFRQKF------------------------GSDAYDQVDVIGI 161 (280)
Q Consensus 123 ~~v~~~~~~~~~~~~~~-----------------~l~~~~~~~------------------------a~aL~~~p~lLlL 161 (280)
.++.+-...+......+ +++...+.+ ||||+.+|++|||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLL 160 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLL 160 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence 77766322211110000 022222211 6799999999999
Q ss_pred eCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 162 DEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 162 DEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||+.. .++.+.|++++++.|.||++|.++.+++.+ ++||.++|.+ ++++.|+.+++.
T Consensus 161 DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~----------iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 161 DEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALE----------IADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHH----------hhCEEEEEeCCEEEEecCHHHHh
Confidence 999654 579999999998768899999999999986 9999999999 999999999988
No 19
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.3e-32 Score=234.86 Aligned_cols=179 Identities=18% Similarity=0.175 Sum_probs=143.7
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCeeEEEecCCccccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRNVAVIKSNKDTRYGL 122 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~i~~~~~~~~~~~~~ 122 (280)
++|.++|+.|+|+++.+++||||+|++||++||+|||||||||.+ .++.|+ ..++.+++.++.+.+.|.++
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~F-ymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTF-YMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEE-EEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 368999999999999999999999999999999999999999999 999997 34667777777777778888
Q ss_pred ceeeeeccccccc-----------------------------ccccCchHHHHHH--------------hhhhccCCCEE
Q 023563 123 DSIVTHDGVKLPC-----------------------------CALTTLSSFRQKF--------------GSDAYDQVDVI 159 (280)
Q Consensus 123 ~~v~~~~~~~~~~-----------------------------~~~~~l~~~~~~~--------------a~aL~~~p~lL 159 (280)
+++.|....+... +....+.+++++. ||||+.+|+++
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fi 161 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFI 161 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEE
Confidence 8877642221111 0011122222211 67999999999
Q ss_pred EEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563 160 GIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK 232 (280)
Q Consensus 160 lLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~ 232 (280)
|||||++. .++..+++.+++. |..|+++.|+..+-. .+|||.+++.+ ++++.|+|+++.
T Consensus 162 LLDEPFAGVDPiaV~dIq~iI~~L~~r-giGvLITDHNVREtL----------~i~dRaYIi~~G~vla~G~p~ei~--- 227 (243)
T COG1137 162 LLDEPFAGVDPIAVIDIQRIIKHLKDR-GIGVLITDHNVRETL----------DICDRAYIISDGKVLAEGSPEEIV--- 227 (243)
T ss_pred EecCCccCCCchhHHHHHHHHHHHHhC-CceEEEccccHHHHH----------hhhheEEEEecCeEEecCCHHHHh---
Confidence 99999654 5788899999886 999999999999775 59999999999 999999999999
Q ss_pred cCCCcEEEeCCc
Q 023563 233 TEETKTELIGGS 244 (280)
Q Consensus 233 ~~~~~~~~~~~~ 244 (280)
+++..+++|-|.
T Consensus 228 ~n~~Vr~~YLG~ 239 (243)
T COG1137 228 NNEDVRRVYLGE 239 (243)
T ss_pred cChhhhhhcccc
Confidence 788888877543
No 20
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4e-31 Score=234.93 Aligned_cols=167 Identities=18% Similarity=0.219 Sum_probs=126.9
Q ss_pred ccEEEcCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC-eeEEEecCC--------ccccc
Q 023563 51 SMVSPRPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG-RNVAVIKSN--------KDTRY 120 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g-~~i~~~~~~--------~~~~~ 120 (280)
+++++++++++|++. .+|+|+||+|++|++++|+||||||||||+ ++++|+.... ..+ ++... ...+.
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~-~~l~GLl~p~~G~v-~~~g~~~~~~~~~~~~~~ 79 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLL-KLLNGLLKPTSGEV-LVDGLDTSSEKSLLELRQ 79 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHH-HHHcCcCcCCCCEE-EECCeeccchhhHHHhhc
Confidence 479999999999765 899999999999999999999999999999 9999984321 222 11111 11234
Q ss_pred ccceeeeecccc----------------------------cccccccCchHHHHHH--------------hhhhccCCCE
Q 023563 121 GLDSIVTHDGVK----------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDV 158 (280)
Q Consensus 121 ~~~~v~~~~~~~----------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~l 158 (280)
.++++||..... ...+...++.+++++. |.+|+.+|++
T Consensus 80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i 159 (235)
T COG1122 80 KVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEI 159 (235)
T ss_pred ceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCE
Confidence 445555532111 1112233444444333 4579999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||||||+.+ ++++.++++..+.|+|+|++|||++++.. +||++++|++ +++.+|+|.+++
T Consensus 160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~----------~ad~v~vl~~G~i~~~g~p~~i~ 227 (235)
T COG1122 160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLE----------YADRVVVLDDGKILADGDPAEIF 227 (235)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHh----------hCCEEEEEECCEEeecCCHHHHh
Confidence 9999997754 58999999998768999999999999986 9999999999 999999998887
No 21
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.97 E-value=4.2e-31 Score=247.08 Aligned_cols=168 Identities=18% Similarity=0.228 Sum_probs=124.2
Q ss_pred cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCc--c
Q 023563 52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNK--D 117 (280)
Q Consensus 52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~--~ 117 (280)
||+++||+|+|++ ..+|+|+||+|++||++||+||||||||||+ ++|+|+.. +|.++..+.+.. .
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLl-r~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLI-RCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 5899999999952 4799999999999999999999999999999 99999832 232222111100 0
Q ss_pred cccccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCC
Q 023563 118 TRYGLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQV 156 (280)
Q Consensus 118 ~~~~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p 156 (280)
.+..+++++|+..... ..+...++.++.+++ |+||+.+|
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P 159 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 1234455554322111 011122333332222 67999999
Q ss_pred CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++||+|||++.+ .++++|++++++.|.|||++||+++.+.+ +||+|++|++ ++++.|++++++
T Consensus 160 ~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~----------~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 160 KVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKR----------ICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHH
Confidence 999999997654 58899999987679999999999999986 9999999999 999999998886
Q ss_pred e
Q 023563 230 L 230 (280)
Q Consensus 230 ~ 230 (280)
.
T Consensus 230 ~ 230 (343)
T TIGR02314 230 S 230 (343)
T ss_pred c
Confidence 3
No 22
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.97 E-value=6.6e-31 Score=250.24 Aligned_cols=167 Identities=23% Similarity=0.272 Sum_probs=123.4
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC------------eeEE
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------------RNVA 110 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------------~~i~ 110 (280)
++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. .| +.++
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLL-k~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLL-RAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHH-HHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 479999999999999999999999999999999999999999999 99999732 22 2244
Q ss_pred EecCCcccccc--cceeee--ec---------c-----cccccccccCchHHHHHH--------------hhhhccCCCE
Q 023563 111 VIKSNKDTRYG--LDSIVT--HD---------G-----VKLPCCALTTLSSFRQKF--------------GSDAYDQVDV 158 (280)
Q Consensus 111 ~~~~~~~~~~~--~~~v~~--~~---------~-----~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~l 158 (280)
+++|....... +...+. .. . .....+...++.++.++. |++|+++|++
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i 160 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV 160 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 44443221110 000000 00 0 001112223333333322 6789999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||||++.+ +++++|++++++ |+|||++|||++++.+ +||++++|++ +++..|++++++
T Consensus 161 LLLDEPtsgLD~~~~~~l~~lL~~l~~~-g~TIIivsHdl~~~~~----------~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 161 LLLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAIHDLDLAAR----------YCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHH----------hCCEEEEEECCEEEEecCHHHHh
Confidence 9999997654 588899999875 9999999999999987 9999999999 999999999876
No 23
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.97 E-value=1.4e-30 Score=239.85 Aligned_cols=168 Identities=17% Similarity=0.155 Sum_probs=121.2
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cccccccce
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLDS 124 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~~ 124 (280)
.+|+++|++++|+++.+|+|+||+|++|+++||+||||||||||+ ++|+|+.. ....+.+.... ...+..+++
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIA-RMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 479999999999998999999999999999999999999999999 99999732 22222211100 001122233
Q ss_pred eeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeC
Q 023563 125 IVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDE 163 (280)
Q Consensus 125 v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDE 163 (280)
++|...... ..+...++....++. |++|+.+|++|||||
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDE 161 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 332211100 001111222221111 568999999999999
Q ss_pred cccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563 164 AQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL 230 (280)
Q Consensus 164 P~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~ 230 (280)
|++.. .++++|++++++ |.|||++|||++++.+ +||++++|++ +++..|+++++..
T Consensus 162 Pt~gLD~~~~~~l~~~l~~~~~~-g~til~~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 162 PTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAER----------LCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHh
Confidence 97654 588899998775 9999999999999986 9999999999 9999999988763
No 24
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.6e-31 Score=246.18 Aligned_cols=173 Identities=13% Similarity=0.130 Sum_probs=126.9
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Cccccccccee
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NKDTRYGLDSI 125 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~~~~~~~~~v 125 (280)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-.. ....+..++++
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLL-r~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVL-RLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 489999999999998999999999999999999999999999999 99999832 1111211110 00112233444
Q ss_pred eeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCc
Q 023563 126 VTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEA 164 (280)
Q Consensus 126 ~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP 164 (280)
+|....+. ..+...++..+.++. ||||+.+|++||||||
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP 163 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 43221110 111122333333322 6789999999999999
Q ss_pred ccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeecC
Q 023563 165 QFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKTE 234 (280)
Q Consensus 165 ~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~~ 234 (280)
++. ..+++.|+++.++.|+|+|+||||.+++.. +||+|++|++ +++..|+++++..++.+
T Consensus 164 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~----------laD~i~vm~~G~i~~~g~~~~~~~~p~~ 230 (351)
T PRK11432 164 LSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFA----------VSDTVIVMNKGKIMQIGSPQELYRQPAS 230 (351)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 654 458888998887779999999999999976 9999999999 99999999998755443
No 25
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.97 E-value=7.7e-31 Score=246.38 Aligned_cols=171 Identities=18% Similarity=0.125 Sum_probs=126.2
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----ccccccccee
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSI 125 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v 125 (280)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-... ...+..++++
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLL-r~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLL-RIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 379999999999998999999999999999999999999999999 99999832 22222211100 0112234444
Q ss_pred eeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCc
Q 023563 126 VTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEA 164 (280)
Q Consensus 126 ~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP 164 (280)
+|+...+. ..+...++..+.++. ||||+.+|++||||||
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP 161 (353)
T TIGR03265 82 FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEP 161 (353)
T ss_pred eCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 44321110 011122333333222 6789999999999999
Q ss_pred ccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563 165 QFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK 232 (280)
Q Consensus 165 ~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~ 232 (280)
++. ..+++.|+++.++.|.|+|+||||++++.+ +||+|++|++ +++..|+++++..++
T Consensus 162 ~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~----------l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 162 LSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALS----------MADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 654 458888998887779999999999999976 9999999999 999999999887543
No 26
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.2e-30 Score=231.30 Aligned_cols=166 Identities=19% Similarity=0.139 Sum_probs=118.4
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------cccccc
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------DTRYGL 122 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~~~~~~ 122 (280)
|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-.... ..+..+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLL-RLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 4789999999988999999999999999999999999999999 99999842 222222211100 011223
Q ss_pred ceeeeecccccc----------------------------cccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563 123 DSIVTHDGVKLP----------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 123 ~~v~~~~~~~~~----------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLl 160 (280)
++++|....... .+...++..+.++. |++|+.+|++||
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 159 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 333332111000 01111222111111 568999999999
Q ss_pred EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||++.. .+++.|++++++.|+|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~----------~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 160 YDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFA----------IADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHH----------hcCEEEEEECCeEEEecCHHHHc
Confidence 99997654 57888888876458999999999999876 9999999999 998889888775
No 27
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=3.5e-31 Score=232.08 Aligned_cols=166 Identities=19% Similarity=0.203 Sum_probs=125.2
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcc--cccccceeeee
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKD--TRYGLDSIVTH 128 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~--~~~~~~~v~~~ 128 (280)
++++++|+|+||++.|++|+||++++|++.|++|||||||||++ |+|.|+.. ....|.+..+... ....++++...
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtf-RmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE 80 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTF-RMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE 80 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchH-HHHhccCCccCceEEEcCcchhhhhhhhcccChhh
Confidence 68999999999999999999999999999999999999999999 99999743 2444444433221 12234444443
Q ss_pred ccccccccc------------------ccCchHHHHHH-----------------------hhhhccCCCEEEEeCcccH
Q 023563 129 DGVKLPCCA------------------LTTLSSFRQKF-----------------------GSDAYDQVDVIGIDEAQFF 167 (280)
Q Consensus 129 ~~~~~~~~~------------------~~~l~~~~~~~-----------------------a~aL~~~p~lLlLDEP~~~ 167 (280)
.+++..... ...+..+++++ -.+++++|+++|||||.++
T Consensus 81 RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSG 160 (300)
T COG4152 81 RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSG 160 (300)
T ss_pred hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccC
Confidence 332211110 11122223322 1268999999999999877
Q ss_pred HH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 168 ED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 168 ~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+| +.+.+.+++++ |.|||++||.|+.+.+ +||++++|+. +.+..|+..++-
T Consensus 161 LDPVN~elLk~~I~~lk~~-GatIifSsH~Me~vEe----------LCD~llmL~kG~~V~~G~v~~ir 218 (300)
T COG4152 161 LDPVNVELLKDAIFELKEE-GATIIFSSHRMEHVEE----------LCDRLLMLKKGQTVLYGTVEDIR 218 (300)
T ss_pred CChhhHHHHHHHHHHHHhc-CCEEEEecchHHHHHH----------HhhhhheecCCceEEeccHHHHH
Confidence 65 67788888886 9999999999999997 9999999999 999999988775
No 28
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.97 E-value=1.2e-30 Score=246.67 Aligned_cols=175 Identities=16% Similarity=0.180 Sum_probs=128.1
Q ss_pred CCCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----ccccccc
Q 023563 48 FIHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGL 122 (280)
Q Consensus 48 ~~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~ 122 (280)
...++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....|.+-... ...+..+
T Consensus 10 ~~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLL-r~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 10 SLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVL-RLIAGFETPDSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred cCCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 345689999999999998999999999999999999999999999999 99999833 11222111100 0012233
Q ss_pred ceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563 123 DSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGI 161 (280)
Q Consensus 123 ~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlL 161 (280)
++++|....+. ..+...++..+.++. ||||+.+|++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLL 168 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLL 168 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 44443221110 011122333333322 6789999999999
Q ss_pred eCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeec
Q 023563 162 DEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKT 233 (280)
Q Consensus 162 DEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~ 233 (280)
|||++ +..+++.|+++.++.|+|+|+||||.+++.. +||+|++|++ +++..|+++++..++.
T Consensus 169 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~----------laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 169 DESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALT----------MSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99965 4458899999988779999999999999976 9999999999 9999999998875543
No 29
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=1.9e-30 Score=227.85 Aligned_cols=155 Identities=19% Similarity=0.218 Sum_probs=115.9
Q ss_pred cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCcc--
Q 023563 52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKD-- 117 (280)
Q Consensus 52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~-- 117 (280)
+++++||+|.|+. ..+|+++||+|++||+++|+||||||||||| ++|.|+. +.|.++..+.....
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLL-niig~ld~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLL-NLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCceEEECCEEcCcCCHHHHHH
Confidence 4789999999953 4799999999999999999999999999999 9999972 23434333322211
Q ss_pred -cccccceeeeecccccccc---------------------------cccCchHHHH-HH--------------hhhhcc
Q 023563 118 -TRYGLDSIVTHDGVKLPCC---------------------------ALTTLSSFRQ-KF--------------GSDAYD 154 (280)
Q Consensus 118 -~~~~~~~v~~~~~~~~~~~---------------------------~~~~l~~~~~-~~--------------a~aL~~ 154 (280)
.+..++++||..++..... ...++.+... ++ ||||+.
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~ 159 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN 159 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence 1344566776544322211 1113332222 11 789999
Q ss_pred CCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-e
Q 023563 155 QVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-R 218 (280)
Q Consensus 155 ~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~ 218 (280)
+|++||.||||.. ..+++++++++++.|+|+||||||...+. +|||++.|++ +
T Consensus 160 ~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-----------~~dr~i~l~dG~ 219 (226)
T COG1136 160 NPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-----------YADRVIELKDGK 219 (226)
T ss_pred CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-----------hCCEEEEEeCCe
Confidence 9999999999654 46999999999888999999999999997 8999999999 6
No 30
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.2e-31 Score=228.60 Aligned_cols=177 Identities=20% Similarity=0.241 Sum_probs=133.1
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEE------------
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAV------------ 111 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~------------ 111 (280)
||+++||+|+|+++.+++|+|++|++|.+++|+||||||||||+ .+++.+. ++|.++.-
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLL-S~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHH-HHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999 8888762 23333321
Q ss_pred ecCCccc--cccccee------eeeccc--------ccccccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563 112 IKSNKDT--RYGLDSI------VTHDGV--------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGI 161 (280)
Q Consensus 112 ~~~~~~~--~~~~~~v------~~~~~~--------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlL 161 (280)
+.|.... |..+..+ ....+. ...++...++.++.+++ |..++++.++++|
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlL 159 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLL 159 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEe
Confidence 1111110 1111111 111111 12233444555666555 4568899999999
Q ss_pred eCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeecC
Q 023563 162 DEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKTE 234 (280)
Q Consensus 162 DEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~~ 234 (280)
|||.+-+ .+++.|++++++.|+||++|-||+++|.. ++|+|+-|++ +++..|+|+++. ..
T Consensus 160 DEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~----------YsD~IVAlK~G~vv~~G~~~eii---~~ 226 (252)
T COG4604 160 DEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASC----------YSDHIVALKNGKVVKQGSPDEII---QP 226 (252)
T ss_pred cCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHh----------hhhheeeecCCEEEecCCHHHhc---CH
Confidence 9995543 58999999999999999999999999997 9999999999 999999999999 66
Q ss_pred CCcEEEeC
Q 023563 235 ETKTELIG 242 (280)
Q Consensus 235 ~~~~~~~~ 242 (280)
+.+.++|.
T Consensus 227 ~~L~eiyd 234 (252)
T COG4604 227 EILSEIYD 234 (252)
T ss_pred HHHHHHhc
Confidence 66666654
No 31
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.2e-30 Score=245.41 Aligned_cols=170 Identities=15% Similarity=0.091 Sum_probs=125.2
Q ss_pred cEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----ccccccccee
Q 023563 52 MVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSI 125 (280)
Q Consensus 52 ~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v 125 (280)
+|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-... ...+..++++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLL-r~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 81 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLL-RMVAGLERITSGEIWIGGRVVNELEPADRDIAMV 81 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHH-HHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 69999999999 788899999999999999999999999999999 99999832 11222111100 0011233334
Q ss_pred eeecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCc
Q 023563 126 VTHDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEA 164 (280)
Q Consensus 126 ~~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP 164 (280)
+|..... ...+...++.++.++. ||||+.+|++||||||
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP 161 (356)
T PRK11650 82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161 (356)
T ss_pred eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4321110 0112223444443332 6799999999999999
Q ss_pred ccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563 165 QFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK 232 (280)
Q Consensus 165 ~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~ 232 (280)
++. ..+++.|+++.++.|+|+|++|||++++.+ +||+|++|++ +++..|+++++..++
T Consensus 162 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~----------l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 162 LSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMT----------LADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 664 458888898887779999999999999986 9999999999 999999999887543
No 32
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.5e-31 Score=227.26 Aligned_cols=178 Identities=24% Similarity=0.280 Sum_probs=133.0
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----------------
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS---------------- 114 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~---------------- 114 (280)
||+.+|++++..++.+|+++||++++||+.+|+||||||||||+ +.+.|... .+..+.+...
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlL-k~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLL-KALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHH-HHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 68999999999999999999999999999999999999999999 99999743 3334433322
Q ss_pred ---Ccccccc--cceeee------ecc--------cccccccccCchHHHHHH--------------hhhh------ccC
Q 023563 115 ---NKDTRYG--LDSIVT------HDG--------VKLPCCALTTLSSFRQKF--------------GSDA------YDQ 155 (280)
Q Consensus 115 ---~~~~~~~--~~~v~~------~~~--------~~~~~~~~~~l~~~~~~~--------------a~aL------~~~ 155 (280)
.....++ +..+++ +.+ ....++...++..+..+. ||.| ..+
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~ 159 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPS 159 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCC
Confidence 2111111 111111 000 011223344555554443 4444 346
Q ss_pred CCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 156 VDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 156 p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
+++|+|||||+.+| .+.+.++++++ |..|++|-||++.+.+ |||||++|.+ +++++|+|.++
T Consensus 160 ~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~----------YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 160 GRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQ----------YADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred CceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHH----------hhheeeeeeCCeEeecCCHHHh
Confidence 67999999988765 57788888887 8999999999999998 9999999999 99999999999
Q ss_pred eeeecCCCcEEEeCCc
Q 023563 229 TLRKTEETKTELIGGS 244 (280)
Q Consensus 229 ~~~~~~~~~~~~~~~~ 244 (280)
+ +++.+..+||..
T Consensus 229 l---t~Etl~~vyg~~ 241 (259)
T COG4559 229 L---TDETLERVYGAD 241 (259)
T ss_pred c---CHHHHHHHhCCc
Confidence 9 888888888743
No 33
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5e-31 Score=227.17 Aligned_cols=170 Identities=15% Similarity=0.182 Sum_probs=128.2
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-------------hhCCeeEEEecCC-
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-------------TQKGRNVAVIKSN- 115 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-------------~~~g~~i~~~~~~- 115 (280)
.+.++++||++.||++.+|+|||++|+++++++|+||||||||||| |++..+ .+.|++|.--..+
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~L-R~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLL-RCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHH-HHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 3579999999999999999999999999999999999999999999 888875 2234443211101
Q ss_pred cccccccceeeeecccccccc---------cccC-----ch----------HHH----HH-----------------Hhh
Q 023563 116 KDTRYGLDSIVTHDGVKLPCC---------ALTT-----LS----------SFR----QK-----------------FGS 150 (280)
Q Consensus 116 ~~~~~~~~~v~~~~~~~~~~~---------~~~~-----l~----------~~~----~~-----------------~a~ 150 (280)
...|..++.+||+.+-+ +.. .+.+ +. .++ ++ .||
T Consensus 84 ~~lRr~vGMVFQkPnPF-p~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR 162 (253)
T COG1117 84 VELRRRVGMVFQKPNPF-PMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHHHHheeeccCCCCC-CchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence 12356677777753321 110 0000 00 000 11 178
Q ss_pred hhccCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
||+.+|++||||||++++| +-++|.++++ .-|||+|||+|..|.+ ++|+..++.. +++..|
T Consensus 163 alAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQAaR----------vSD~taFf~~G~LvE~g 230 (253)
T COG1117 163 ALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQAAR----------VSDYTAFFYLGELVEFG 230 (253)
T ss_pred HHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHHHHH----------HhHhhhhhcccEEEEEc
Confidence 9999999999999988764 7788888875 7999999999999998 9999999999 999999
Q ss_pred Ccceeeeeec
Q 023563 224 KRAFFTLRKT 233 (280)
Q Consensus 224 ~~~~~~~~~~ 233 (280)
++++++.++.
T Consensus 231 ~T~~iF~~P~ 240 (253)
T COG1117 231 PTDKIFTNPK 240 (253)
T ss_pred CHHhhhcCcc
Confidence 9999995443
No 34
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.5e-30 Score=244.28 Aligned_cols=169 Identities=19% Similarity=0.163 Sum_probs=122.6
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----cccccccceee
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSIV 126 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v~ 126 (280)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-... ...+..+++++
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL-~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLL-RMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 58999999999998999999999999999999999999999999 99999832 22222211100 00112233333
Q ss_pred eecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563 127 THDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ 165 (280)
Q Consensus 127 ~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~ 165 (280)
|..... ...+...++.++.++. |+||+.+|++||||||+
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 321110 0011122333222221 67899999999999997
Q ss_pred cHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563 166 FFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR 231 (280)
Q Consensus 166 ~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~ 231 (280)
+.+ .+++.|+++.++.|.|+|++|||++++.+ +||+|++|++ +++..|+++++..+
T Consensus 162 s~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~----------~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMT----------LADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHhC
Confidence 654 47888888877669999999999999976 9999999999 99999999887643
No 35
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1e-29 Score=237.98 Aligned_cols=167 Identities=20% Similarity=0.220 Sum_probs=121.3
Q ss_pred cEEEcCceEEeC----CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------c
Q 023563 52 MVSPRPPLFSLQ----NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------D 117 (280)
Q Consensus 52 ~l~~~~ls~~y~----~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~ 117 (280)
||+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+..... .
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLl-k~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLI-RCINLLERPTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECCcCCHHHHHH
Confidence 589999999997 46899999999999999999999999999999 99999842 222232211110 0
Q ss_pred cccccceeeeecccccc---------------------------cccccCchHHHHHH--------------hhhhccCC
Q 023563 118 TRYGLDSIVTHDGVKLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQV 156 (280)
Q Consensus 118 ~~~~~~~v~~~~~~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p 156 (280)
.+..+++++|+...... .+...++.++.++. |++|+.+|
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 159 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP 159 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 12233444432211100 01111222222211 67899999
Q ss_pred CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++||||||++.+ .++++|++++++.|+|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 160 ~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~----------~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 160 KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKR----------ICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHH
Confidence 999999997654 58889999877669999999999999986 9999999999 999999988876
No 36
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.4e-30 Score=242.47 Aligned_cols=172 Identities=13% Similarity=0.113 Sum_probs=125.4
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Ccccccccce
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NKDTRYGLDS 124 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~~~~~~~~~ 124 (280)
.++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-.. ....+..+++
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLL-RMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4589999999999988899999999999999999999999999999 99999832 1222211110 0011223444
Q ss_pred eeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeC
Q 023563 125 IVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDE 163 (280)
Q Consensus 125 v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDE 163 (280)
++|....+. ..+...++.++.++. ||||+.+|++|||||
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDE 175 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDE 175 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 444222110 011112232222222 678999999999999
Q ss_pred cccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563 164 AQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK 232 (280)
Q Consensus 164 P~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~ 232 (280)
|++.+ .+++.|+++.++.|.|+|++|||.+++.. +||++++|++ +++..|+++++..++
T Consensus 176 P~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~----------laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 176 PMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMT----------MAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH----------hCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 96654 47778888877679999999999999876 9999999999 999999999887543
No 37
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.4e-29 Score=222.38 Aligned_cols=165 Identities=16% Similarity=0.177 Sum_probs=115.7
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-----ccccccceee
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-----DTRYGLDSIV 126 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-----~~~~~~~~v~ 126 (280)
|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||+ ++|+|+.. ....+.+..... ..+..+++++
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTI-KMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 5789999999988999999999999999999999999999999 99999732 222222111000 0011222222
Q ss_pred eecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563 127 THDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ 165 (280)
Q Consensus 127 ~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~ 165 (280)
+..... ...+...++....++. +++++.+|++||||||+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt 159 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 211100 0011112222222111 56899999999999997
Q ss_pred cHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 166 FFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 166 ~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
+.. .+++.|.+++++.|+|||++|||++++.+ +||++++|++ +++..|+++++
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 160 IGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQ----------LCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEeCCEEEEeCChHHc
Confidence 654 47888888877558999999999999986 9999999999 88888776653
No 38
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.3e-29 Score=225.29 Aligned_cols=167 Identities=21% Similarity=0.171 Sum_probs=118.3
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe----------eEEEec
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR----------NVAVIK 113 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~----------~i~~~~ 113 (280)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. +|. .+++++
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLL-RLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 58999999999988999999999999999999999999999999 99999832 221 233333
Q ss_pred CCccccc--ccceeee----eccc------------ccccccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563 114 SNKDTRY--GLDSIVT----HDGV------------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGI 161 (280)
Q Consensus 114 ~~~~~~~--~~~~v~~----~~~~------------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlL 161 (280)
|...... .+...+. .... ....+...++..+.++. ++||+.+|++|||
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 160 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLL 160 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3321100 0000000 0000 00001111222222211 5689999999999
Q ss_pred eCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 162 DEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 162 DEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||++.. .++++|++++++.|+|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 161 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 161 DEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALE----------VADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hCCEEEEEECCeEEEecCHHHHh
Confidence 9997654 47888888877558999999999998876 8999999999 988888888765
No 39
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.96 E-value=1.2e-29 Score=239.06 Aligned_cols=170 Identities=17% Similarity=0.157 Sum_probs=126.3
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CC--eeEEEecCC----cccccccce
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KG--RNVAVIKSN----KDTRYGLDS 124 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g--~~i~~~~~~----~~~~~~~~~ 124 (280)
.|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. .. ..+.+.... ...+..+++
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~ 83 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLL-RAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLAL 83 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEE
Confidence 48999999999998999999999999999999999999999999 99999843 23 333322111 011233445
Q ss_pred eeeecccccc---------------------------cccccCchHHHHHH--------------hhhhccCCCEEEEeC
Q 023563 125 IVTHDGVKLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIGIDE 163 (280)
Q Consensus 125 v~~~~~~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDE 163 (280)
++|....+.. .+...++.++.++. |+||+.+|++|||||
T Consensus 84 vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE 163 (362)
T TIGR03258 84 LFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE 163 (362)
T ss_pred EECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5543221100 11122233222222 678999999999999
Q ss_pred cccH------HHHHHHHHHHHhhc-CCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563 164 AQFF------EDLYDFCREAADHD-GKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK 232 (280)
Q Consensus 164 P~~~------~~i~~~l~~l~~~~-g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~ 232 (280)
|++. .++++.|+++.++. |+|+|++|||++++.+ +||+|++|++ +++..|+++++..+.
T Consensus 164 P~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~----------l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 164 PLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALT----------LADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9654 45888899988765 8999999999999976 9999999999 999999999887543
No 40
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7.7e-30 Score=226.45 Aligned_cols=167 Identities=18% Similarity=0.151 Sum_probs=118.3
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------cccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGL 122 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~ 122 (280)
++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+ ++|+|+.. .+..+.+..... ..+..+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLL-GTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 479999999999988999999999999999999999999999999 99999732 222222211100 001122
Q ss_pred ceeeeecccccc-------------------------ccccc-CchHHHHHH--------------hhhhccCCCEEEEe
Q 023563 123 DSIVTHDGVKLP-------------------------CCALT-TLSSFRQKF--------------GSDAYDQVDVIGID 162 (280)
Q Consensus 123 ~~v~~~~~~~~~-------------------------~~~~~-~l~~~~~~~--------------a~aL~~~p~lLlLD 162 (280)
+++++....... .+... ++.+...+. |++++.+|++||||
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlD 162 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD 162 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEc
Confidence 233321110000 00000 011111100 56899999999999
Q ss_pred CcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 163 EAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 163 EP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||++.. .+++.|++++++ |.|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 163 EPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALK----------LADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred CccccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHh----------hCCEEEEEeCCEEEeeCCHHHHh
Confidence 997544 578888888765 9999999999998876 9999999999 999999988876
No 41
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.96 E-value=8.5e-30 Score=223.61 Aligned_cols=165 Identities=19% Similarity=0.242 Sum_probs=115.4
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------ccccccce
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGLDS 124 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~~~ 124 (280)
|+++|++++|+++.+++++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+..... ..+..+++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLL-KTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 5789999999988899999999999999999999999999999 99999732 222222211100 00122333
Q ss_pred eeeecccccc-------------------------ccccc-CchHHHHHH--------------hhhhccCCCEEEEeCc
Q 023563 125 IVTHDGVKLP-------------------------CCALT-TLSSFRQKF--------------GSDAYDQVDVIGIDEA 164 (280)
Q Consensus 125 v~~~~~~~~~-------------------------~~~~~-~l~~~~~~~--------------a~aL~~~p~lLlLDEP 164 (280)
+++....... .+... ++....++. +++++.+|++||||||
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 159 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 3332111000 00000 111111111 5689999999999999
Q ss_pred ccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 165 QFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 165 ~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++. ..++++|++++++ |.|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 160 SEGLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALE----------IADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred cccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hccEEEEeeCCeEEEeCCHHHHh
Confidence 654 4588899888764 9999999999999876 9999999999 888888776654
No 42
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.96 E-value=7.1e-30 Score=239.86 Aligned_cols=169 Identities=16% Similarity=0.184 Sum_probs=123.3
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----cccccccceee
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSIV 126 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v~ 126 (280)
+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-... ...+..+++++
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLL-r~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLL-RIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 58999999999998999999999999999999999999999999 99999832 22222111100 00112233333
Q ss_pred eecccc-------------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563 127 THDGVK-------------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGI 161 (280)
Q Consensus 127 ~~~~~~-------------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlL 161 (280)
|..... ...+...++.++.+++ |+||+.+|++|||
T Consensus 81 Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLL 160 (353)
T PRK10851 81 QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL 160 (353)
T ss_pred cCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 321110 0011122232222222 6789999999999
Q ss_pred eCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563 162 DEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR 231 (280)
Q Consensus 162 DEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~ 231 (280)
|||++. ..+++.|+++.++.|.|+|++|||++++.+ +||+|++|++ +++..|+++++..+
T Consensus 161 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~----------~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAME----------VADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999654 458889999887679999999999999986 9999999999 99999999988644
No 43
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.1e-29 Score=225.48 Aligned_cols=166 Identities=22% Similarity=0.211 Sum_probs=116.4
Q ss_pred EEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------ccccc
Q 023563 53 VSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------DTRYG 121 (280)
Q Consensus 53 l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~~~~~ 121 (280)
|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+..... ..+..
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLL-RCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 478999999987 7899999999999999999999999999999 99999842 222222111000 01112
Q ss_pred cceeeeecccccc-----------------------------------cccccCchHHHHHH--------------hhhh
Q 023563 122 LDSIVTHDGVKLP-----------------------------------CCALTTLSSFRQKF--------------GSDA 152 (280)
Q Consensus 122 ~~~v~~~~~~~~~-----------------------------------~~~~~~l~~~~~~~--------------a~aL 152 (280)
++++++....... .+...++....++. |+++
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 2333322111000 00111121111111 5689
Q ss_pred ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563 153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR 225 (280)
Q Consensus 153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~ 225 (280)
+.+|++||||||++.. .+++.|++++++.|+|||++|||++++.+ +||++++|++ +++..|++
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~----------~~d~v~~l~~G~i~~~~~~ 229 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLARE----------YADRIVGLKDGRIVFDGPP 229 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEeecCH
Confidence 9999999999997654 47888888876558999999999999986 9999999999 98888888
Q ss_pred ceee
Q 023563 226 AFFT 229 (280)
Q Consensus 226 ~~~~ 229 (280)
+++.
T Consensus 230 ~~~~ 233 (241)
T cd03256 230 AELT 233 (241)
T ss_pred HHhh
Confidence 7753
No 44
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.96 E-value=1.2e-29 Score=224.85 Aligned_cols=165 Identities=22% Similarity=0.203 Sum_probs=116.6
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------c-cccccce
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------D-TRYGLDS 124 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~-~~~~~~~ 124 (280)
|+++|++++|+++.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+..... . .+..+++
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLF-NLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHH-HHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 4689999999988899999999999999999999999999999 99999732 222222111100 0 0112233
Q ss_pred eeeeccccc-------------------------------------ccccccCchHHHHHH--------------hhhhc
Q 023563 125 IVTHDGVKL-------------------------------------PCCALTTLSSFRQKF--------------GSDAY 153 (280)
Q Consensus 125 v~~~~~~~~-------------------------------------~~~~~~~l~~~~~~~--------------a~aL~ 153 (280)
++|...... ..+...++....++. |++++
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 159 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALA 159 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHh
Confidence 333211100 000111111111111 56899
Q ss_pred cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563 154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~ 226 (280)
.+|++||||||++.. .+++.|++++++ |+|||++|||++++.+ +||++++|++ +++..|+++
T Consensus 160 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~ 228 (236)
T cd03219 160 TDPKLLLLDEPAAGLNPEETEELAELIRELRER-GITVLLVEHDMDVVMS----------LADRVTVLDQGRVIAEGTPD 228 (236)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHH----------hCCEEEEEeCCEEEeecCHH
Confidence 999999999997644 588889888774 9999999999999976 9999999999 888888888
Q ss_pred eee
Q 023563 227 FFT 229 (280)
Q Consensus 227 ~~~ 229 (280)
++.
T Consensus 229 ~~~ 231 (236)
T cd03219 229 EVR 231 (236)
T ss_pred Hhc
Confidence 775
No 45
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.4e-29 Score=222.61 Aligned_cols=167 Identities=20% Similarity=0.210 Sum_probs=117.7
Q ss_pred cEEEcCceEEeCCe----eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------c
Q 023563 52 MVSPRPPLFSLQNR----NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------D 117 (280)
Q Consensus 52 ~l~~~~ls~~y~~~----~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~ 117 (280)
||+++|++++|+++ .+|+++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+..... .
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLI-RCINGLERPTSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 58999999999876 899999999999999999999999999999 99999832 122222111100 0
Q ss_pred cccccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCC
Q 023563 118 TRYGLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQV 156 (280)
Q Consensus 118 ~~~~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p 156 (280)
.+..++++++...... ..+...++.+..++. +++++.+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (233)
T cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP 159 (233)
T ss_pred HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 0112223332211100 001111222221111 56899999
Q ss_pred CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++||||||++.. .+++.|++++++.|+|||++||+++++.+ +||++++|++ +++..|+++++.
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKR----------ICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEecCHHHHh
Confidence 999999997654 47888888876558999999999999876 9999999999 998888877664
No 46
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.6e-29 Score=219.50 Aligned_cols=160 Identities=18% Similarity=0.185 Sum_probs=110.7
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----cccccccceeee
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSIVT 127 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v~~ 127 (280)
|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-... ...+..++++++
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLL-RLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 4789999999988999999999999999999999999999999 99999732 22222211100 000111222222
Q ss_pred ecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCccc
Q 023563 128 HDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQF 166 (280)
Q Consensus 128 ~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~ 166 (280)
..... ...+...++..+.++. +++|+.+|++||||||++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~ 159 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLS 159 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 11100 0011112222222211 578999999999999976
Q ss_pred HH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 167 FE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 167 ~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
.. .++++|++++++.|+|||++|||++++.+ +||++++|++ ++++.|
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~----------~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 160 ALDAKLREELREELKELQRELGITTIYVTHDQEEALA----------LADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH----------hcCEEEEEECCEEEecC
Confidence 54 58888888876559999999999999876 9999999998 776543
No 47
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.8e-29 Score=226.19 Aligned_cols=168 Identities=15% Similarity=0.129 Sum_probs=118.5
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------cccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGL 122 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~ 122 (280)
++|+++|++++|+++.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+..... ..+..+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVF-NCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHH-HHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 479999999999988999999999999999999999999999999 99999832 222221111000 001112
Q ss_pred ceeeeeccccc------------------------------------------ccccccCchHHHHHH------------
Q 023563 123 DSIVTHDGVKL------------------------------------------PCCALTTLSSFRQKF------------ 148 (280)
Q Consensus 123 ~~v~~~~~~~~------------------------------------------~~~~~~~l~~~~~~~------------ 148 (280)
.++++...... ..+...++..+.++.
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv 162 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRL 162 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHH
Confidence 22222111000 000111222221111
Q ss_pred --hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee
Q 023563 149 --GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC 219 (280)
Q Consensus 149 --a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i 219 (280)
+++++.+|++||||||++.. .++++|.+++++.|+|||++||+++++.+ +||++++|++ ++
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~----------~~d~i~~l~~g~i 232 (255)
T PRK11300 163 EIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMG----------ISDRIYVVNQGTP 232 (255)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCeE
Confidence 56899999999999996654 47888888876558999999999999976 9999999999 99
Q ss_pred ccccCcceee
Q 023563 220 EFCGKRAFFT 229 (280)
Q Consensus 220 ~~~g~~~~~~ 229 (280)
+..|+++++.
T Consensus 233 ~~~~~~~~~~ 242 (255)
T PRK11300 233 LANGTPEEIR 242 (255)
T ss_pred EecCCHHHHh
Confidence 8888887765
No 48
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.96 E-value=3.6e-29 Score=226.65 Aligned_cols=169 Identities=21% Similarity=0.191 Sum_probs=121.0
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------ccc
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------DTR 119 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~~~ 119 (280)
.++|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+..... ..+
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLL-RLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4589999999999988999999999999999999999999999999 99999842 222222111100 001
Q ss_pred cccceeeeecccccc----------------------------cccccCchHHHHHH--------------hhhhccCCC
Q 023563 120 YGLDSIVTHDGVKLP----------------------------CCALTTLSSFRQKF--------------GSDAYDQVD 157 (280)
Q Consensus 120 ~~~~~v~~~~~~~~~----------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~ 157 (280)
..++++++....... .+...++....++. +++|+.+|+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ 163 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPD 163 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 122333332111000 01111222211111 568999999
Q ss_pred EEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+||||||++. ..++++|++++++.|+|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 164 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~----------~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 164 LIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLS----------IADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHH----------hhCEEEEEECCEEEEeCCHHHHh
Confidence 9999999654 458888988876558999999999999986 9999999999 999999988876
No 49
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.96 E-value=1.6e-29 Score=232.64 Aligned_cols=165 Identities=18% Similarity=0.164 Sum_probs=118.7
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----ccccccccee
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLDSI 125 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~~v 125 (280)
+++++|++++|+++.+|+|+||+|++||++||+||||||||||+ ++|.|+.. ....+.+.... ...+..++++
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl-~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTM-KIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 58999999999999999999999999999999999999999999 99999832 22222211100 0111222333
Q ss_pred eeecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCc
Q 023563 126 VTHDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEA 164 (280)
Q Consensus 126 ~~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP 164 (280)
++..... ...+...++....++. |+||+.+|++||||||
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEP 160 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEP 160 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3221110 0011112222222211 5689999999999999
Q ss_pred ccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 165 QFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 165 ~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++.. .+++.|++++ + ++|||++||+++++.+ +||+|++|++ ++++.|+++++.
T Consensus 161 t~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 161 TTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQEVEA----------ICDRVIIINKGKIVADKKLDELS 220 (301)
T ss_pred cccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHH
Confidence 7654 5788888885 3 7999999999999987 9999999999 999999999875
No 50
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.96 E-value=1.4e-29 Score=225.38 Aligned_cols=167 Identities=21% Similarity=0.219 Sum_probs=116.9
Q ss_pred cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------cccc
Q 023563 52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------DTRY 120 (280)
Q Consensus 52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~~~~ 120 (280)
||+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+..... ..+.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLL-RCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 588999999998 78899999999999999999999999999999 99999742 122221111000 0011
Q ss_pred ccceeeeeccccc-----------------------------------ccccccCchHHHHHH--------------hhh
Q 023563 121 GLDSIVTHDGVKL-----------------------------------PCCALTTLSSFRQKF--------------GSD 151 (280)
Q Consensus 121 ~~~~v~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~--------------a~a 151 (280)
.++++++...... ..+...++....++. |++
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a 159 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARA 159 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 1222222111000 001111222221111 578
Q ss_pred hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
|+.+|++||||||++.. .+.++|++++++.|+|||++|||++++.+ +||++++|++ +++..|+
T Consensus 160 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~----------~~d~v~~l~~G~i~~~~~ 229 (243)
T TIGR02315 160 LAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKK----------YADRIVGLKAGEIVFDGA 229 (243)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hcCeEEEEECCEEEecCC
Confidence 99999999999997654 47888888876558999999999999876 9999999999 9888888
Q ss_pred cceee
Q 023563 225 RAFFT 229 (280)
Q Consensus 225 ~~~~~ 229 (280)
++++.
T Consensus 230 ~~~~~ 234 (243)
T TIGR02315 230 PSELD 234 (243)
T ss_pred HHHhC
Confidence 87653
No 51
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.96 E-value=1.4e-29 Score=227.37 Aligned_cols=168 Identities=18% Similarity=0.194 Sum_probs=123.2
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC-eeEEEecCCcccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG-RNVAVIKSNKDTRYG 121 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g-~~i~~~~~~~~~~~~ 121 (280)
++|+++||+++|+++.+|+++||+|++|++++|+||||||||||+ ++|+|+.. .+ ..+++++|+......
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl-~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLV-RVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTT 81 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCccCEEEeccccccccc
Confidence 479999999999988899999999999999999999999999999 99999832 11 246677665422111
Q ss_pred ----cceeee-ec----ccccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH------HHHH
Q 023563 122 ----LDSIVT-HD----GVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DLYD 172 (280)
Q Consensus 122 ----~~~v~~-~~----~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i~~ 172 (280)
+..... .. ......+...++.++.++. +++++.+|++||||||++.. .+++
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 161 (251)
T PRK09544 82 LPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD 161 (251)
T ss_pred cChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 000000 00 0011112223333332222 67899999999999997654 5788
Q ss_pred HHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceee
Q 023563 173 FCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFT 229 (280)
Q Consensus 173 ~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~ 229 (280)
.|++++++.|.|||++|||++++.+ +||++++|+++++..|+++++.
T Consensus 162 ~L~~~~~~~g~tiiivsH~~~~i~~----------~~d~i~~l~~~i~~~g~~~~~~ 208 (251)
T PRK09544 162 LIDQLRRELDCAVLMVSHDLHLVMA----------KTDEVLCLNHHICCSGTPEVVS 208 (251)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHH----------hCCEEEEECCceEeeCCHHHHh
Confidence 8888876558999999999999876 9999999977888889988876
No 52
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.96 E-value=2.6e-29 Score=222.06 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=116.1
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-------cccccccce
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-------KDTRYGLDS 124 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-------~~~~~~~~~ 124 (280)
|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.... ...+..+++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTF-YMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 4789999999988999999999999999999999999999999 99999732 22222211100 000112233
Q ss_pred eeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeC
Q 023563 125 IVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDE 163 (280)
Q Consensus 125 v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDE 163 (280)
+++...... ..+...++....++. +++++.+|++|||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 159 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 333211100 001111222111111 568999999999999
Q ss_pred cccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 164 AQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 164 P~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|++. ..++++|++++++ |+|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 160 Pt~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 160 PFAGVDPIAVQDIQKIIKILKDR-GIGVLITDHNVRETLS----------ITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCeEEEEeCHHHhh
Confidence 9654 4578888888765 9999999999998876 9999999999 888888877765
No 53
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.96 E-value=3.4e-29 Score=218.61 Aligned_cols=160 Identities=17% Similarity=0.164 Sum_probs=111.6
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc----ccccccceeee
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK----DTRYGLDSIVT 127 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~----~~~~~~~~v~~ 127 (280)
|+++|++++|+++.+++|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+..... ..+..+.++++
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTL-RMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 4789999999988999999999999999999999999999999 99999832 222222111000 00111222222
Q ss_pred ecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCccc
Q 023563 128 HDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQF 166 (280)
Q Consensus 128 ~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~ 166 (280)
..... ...+...++..+.++. +++++.+|++||||||++
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~ 159 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLS 159 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 11100 0011112222222211 568999999999999976
Q ss_pred HH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 167 FE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 167 ~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
.. .+++.|++++++.|.|||++|||++++.+ +||++++|++ ++++.|
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~----------~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 160 NLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMT----------MADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hcCeEEEEECCEEEecC
Confidence 54 47888998887558999999999999876 8999999998 776554
No 54
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.8e-29 Score=230.86 Aligned_cols=167 Identities=13% Similarity=0.196 Sum_probs=119.1
Q ss_pred cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe-----------
Q 023563 52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR----------- 107 (280)
Q Consensus 52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~----------- 107 (280)
+|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+ ++|+|+.. +|.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLI-QHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence 4899999999964 4699999999999999999999999999999 99999732 221
Q ss_pred ---eEEEecCCcccc---cccceeee----ecc--------cccccccccCch--HHHHHH--------------hhhhc
Q 023563 108 ---NVAVIKSNKDTR---YGLDSIVT----HDG--------VKLPCCALTTLS--SFRQKF--------------GSDAY 153 (280)
Q Consensus 108 ---~i~~~~~~~~~~---~~~~~v~~----~~~--------~~~~~~~~~~l~--~~~~~~--------------a~aL~ 153 (280)
.++|++|..... ..+...+. ..+ .....+...++. .+.++. |+||+
T Consensus 81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 233444432100 00000000 000 000111122332 222221 67899
Q ss_pred cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563 154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~ 226 (280)
.+|++||||||++.+ .++++|++++++.|+|||++|||++++.+ +||+|++|++ ++++.|+++
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~----------~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAK----------LADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEECCHH
Confidence 999999999997654 58889999877569999999999999876 9999999999 999999998
Q ss_pred eee
Q 023563 227 FFT 229 (280)
Q Consensus 227 ~~~ 229 (280)
++.
T Consensus 231 ~~~ 233 (287)
T PRK13637 231 EVF 233 (287)
T ss_pred HHH
Confidence 876
No 55
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.96 E-value=2.6e-29 Score=219.94 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=107.6
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------ccc
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------DTR 119 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~~~ 119 (280)
||+++|++++|++ +.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-.... ..+
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFL-KLILGIEKPTRGKIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEehhhcChhHHHHHH
Confidence 5899999999964 4699999999999999999999999999999 99999842 222222211100 011
Q ss_pred cccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCE
Q 023563 120 YGLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDV 158 (280)
Q Consensus 120 ~~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~l 158 (280)
..+++++|...... ..+...++..+.++. |++|+.+|++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL 159 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 22333333211110 001111222221111 5789999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
||||||++.+ .++++|++++++ |.|||++|||++++.+ +||++++|++
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~----------~~d~i~~l~~ 213 (216)
T TIGR00960 160 LLADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVATHDINLVET----------YRHRTLTLSR 213 (216)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hCCEEEEEeC
Confidence 9999997654 478888888765 9999999999999976 8999999987
No 56
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.7e-29 Score=231.13 Aligned_cols=166 Identities=17% Similarity=0.164 Sum_probs=118.3
Q ss_pred cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----------
Q 023563 52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN---------- 115 (280)
Q Consensus 52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~---------- 115 (280)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-...
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLL-QHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHH-HHHhcCCCCCCcEEEECCEECccccccccH
Confidence 5899999999963 2599999999999999999999999999999 99999832 11112111000
Q ss_pred cccccccceeeeecc-ccc---------------------------ccccccCch-HHHHHH--------------hhhh
Q 023563 116 KDTRYGLDSIVTHDG-VKL---------------------------PCCALTTLS-SFRQKF--------------GSDA 152 (280)
Q Consensus 116 ~~~~~~~~~v~~~~~-~~~---------------------------~~~~~~~l~-~~~~~~--------------a~aL 152 (280)
...+..+++++|+.. ..+ ..+...++. .+.++. |++|
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 001222333433210 000 001112221 121111 6789
Q ss_pred ccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563 153 YDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR 225 (280)
Q Consensus 153 ~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~ 225 (280)
+.+|++||||||++. ..++++|++++++ |.|||++|||++++.+ +||+|++|++ ++++.|++
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~vtHd~~~~~~----------~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMDDVAD----------YADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEECCH
Confidence 999999999999754 4578888888875 9999999999999976 9999999999 99999999
Q ss_pred ceee
Q 023563 226 AFFT 229 (280)
Q Consensus 226 ~~~~ 229 (280)
+++.
T Consensus 229 ~~~~ 232 (288)
T PRK13643 229 SDVF 232 (288)
T ss_pred HHHH
Confidence 9887
No 57
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.5e-29 Score=231.57 Aligned_cols=169 Identities=11% Similarity=0.049 Sum_probs=122.2
Q ss_pred cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-----CCeeEEEecCCcc-----
Q 023563 52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-----KGRNVAVIKSNKD----- 117 (280)
Q Consensus 52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-----~g~~i~~~~~~~~----- 117 (280)
+|+++||++.|+. ..+|+||||+|++||++||+||||||||||+ ++|.|+.. ....+.+...+..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~-~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSS-LAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 6999999999976 4799999999999999999999999999999 99999743 2222222211100
Q ss_pred --c---ccccceeeeeccc-c-----------------------------cccccccCchH---HHHHH-----------
Q 023563 118 --T---RYGLDSIVTHDGV-K-----------------------------LPCCALTTLSS---FRQKF----------- 148 (280)
Q Consensus 118 --~---~~~~~~v~~~~~~-~-----------------------------~~~~~~~~l~~---~~~~~----------- 148 (280)
. +..+++++|.... + ...+...++.+ ..+++
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 0 0123334432110 0 01111223321 11111
Q ss_pred ---hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-e
Q 023563 149 ---GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-R 218 (280)
Q Consensus 149 ---a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~ 218 (280)
|+||+.+|++||+|||++.+ +++++|++++++.|.|+|++|||++++.+ +||+|++|.+ +
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~----------~adri~vm~~G~ 231 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAE----------AAHKIIVMYAGQ 231 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCE
Confidence 67899999999999997654 58899999987679999999999999986 9999999999 9
Q ss_pred eccccCcceeeee
Q 023563 219 CEFCGKRAFFTLR 231 (280)
Q Consensus 219 i~~~g~~~~~~~~ 231 (280)
+++.|+++++..+
T Consensus 232 ive~g~~~~~~~~ 244 (326)
T PRK11022 232 VVETGKAHDIFRA 244 (326)
T ss_pred EEEECCHHHHhhC
Confidence 9999998888643
No 58
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.6e-29 Score=227.64 Aligned_cols=168 Identities=15% Similarity=0.142 Sum_probs=120.9
Q ss_pred ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--------cccc
Q 023563 51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--------DTRY 120 (280)
Q Consensus 51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--------~~~~ 120 (280)
++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+..... ..+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl-~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLF-QNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999996 57899999999999999999999999999999 99999832 222222111100 0112
Q ss_pred ccceeeeecc-ccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCE
Q 023563 121 GLDSIVTHDG-VKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDV 158 (280)
Q Consensus 121 ~~~~v~~~~~-~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~l 158 (280)
.++++++... ..+ ..+...++..+.++. |++|+.+|++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l 162 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 162 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 2333333211 000 001112222222221 5689999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||||++.+ .++++|++++++.|.|||++|||++++.+ +||++++|++ ++++.|+++++.
T Consensus 163 LilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~----------~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 163 LVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPL----------YCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHh
Confidence 9999997654 47888988887559999999999999976 8999999999 999999998876
No 59
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=1.1e-28 Score=207.85 Aligned_cols=146 Identities=21% Similarity=0.219 Sum_probs=109.2
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcc-------cccccce
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKD-------TRYGLDS 124 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~-------~~~~~~~ 124 (280)
|+++|++++|+++++++++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-..... .+..+++
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLM-KILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 4789999999988999999999999999999999999999999 99999843 3333332211100 1112223
Q ss_pred eeeecccccccccccCchHHHHHHhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhc
Q 023563 125 IVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRS 198 (280)
Q Consensus 125 v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~ 198 (280)
+++ +.+=...+-..+++++.+|++||||||++. ..+++.|++++++ |.|+|++|||++++.+
T Consensus 80 ~~q----------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~- 147 (163)
T cd03216 80 VYQ----------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFE- 147 (163)
T ss_pred EEe----------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH-
Confidence 322 111111222237899999999999999654 4588888888765 9999999999998876
Q ss_pred cCCccccccccceEEEeec-eec
Q 023563 199 FGSVIDIIPLADSVTKLTA-RCE 220 (280)
Q Consensus 199 ~~~~~~ll~~aD~i~~L~~-~i~ 220 (280)
+||++++|++ +++
T Consensus 148 ---------~~d~~~~l~~g~i~ 161 (163)
T cd03216 148 ---------IADRVTVLRDGRVV 161 (163)
T ss_pred ---------hCCEEEEEECCEEE
Confidence 8999999998 664
No 60
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.3e-29 Score=229.38 Aligned_cols=167 Identities=16% Similarity=0.142 Sum_probs=119.7
Q ss_pred cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------
Q 023563 52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--------- 116 (280)
Q Consensus 52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--------- 116 (280)
.|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+ ++|.|+.. ....+.+.....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLL-QHLNGLLQPTSGTVTIGERVITAGKKNKKL 80 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEECCEECccccccchH
Confidence 3899999999964 4699999999999999999999999999999 99999732 112222111100
Q ss_pred -ccccccceeeeecc-ccc---------------------------ccccccCch-HHHHHH--------------hhhh
Q 023563 117 -DTRYGLDSIVTHDG-VKL---------------------------PCCALTTLS-SFRQKF--------------GSDA 152 (280)
Q Consensus 117 -~~~~~~~~v~~~~~-~~~---------------------------~~~~~~~l~-~~~~~~--------------a~aL 152 (280)
..+..+++++|... ..+ ..+...++. .+.++. |++|
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 81 KPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 01122333333210 000 011122332 222221 6789
Q ss_pred ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563 153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR 225 (280)
Q Consensus 153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~ 225 (280)
+.+|++||||||++.+ .++++|++++++.|.|||++|||++++.+ +||+|++|++ ++++.|++
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~----------~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAAR----------YADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEECCH
Confidence 9999999999997654 48888999877669999999999999976 9999999999 99999999
Q ss_pred ceee
Q 023563 226 AFFT 229 (280)
Q Consensus 226 ~~~~ 229 (280)
+++.
T Consensus 231 ~~~~ 234 (290)
T PRK13634 231 REIF 234 (290)
T ss_pred HHHh
Confidence 8876
No 61
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.6e-29 Score=227.68 Aligned_cols=166 Identities=16% Similarity=0.150 Sum_probs=119.0
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--------cccccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--------DTRYGL 122 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--------~~~~~~ 122 (280)
||+++||+++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-.... ..+..+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLF-MNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 58999999999988899999999999999999999999999999 99999732 122221111000 011223
Q ss_pred ceeeeeccc-cc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563 123 DSIVTHDGV-KL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 123 ~~v~~~~~~-~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl 160 (280)
+++++.... .. ..+...++..+.++. |++|+.+|++||
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lll 159 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLL 159 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 333332110 00 001111222221111 578999999999
Q ss_pred EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||++.. .++++|++++++ |.|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 160 LDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 160 LDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYE----------ISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHh
Confidence 99997654 578889888765 9999999999999976 9999999999 999999988876
No 62
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.96 E-value=3.5e-29 Score=233.33 Aligned_cols=170 Identities=14% Similarity=0.091 Sum_probs=121.3
Q ss_pred CccEEEcCceEEeCC-------------eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC
Q 023563 50 HSMVSPRPPLFSLQN-------------RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN 115 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~-------------~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~ 115 (280)
+++|+++||+++|+. ..+++||||+|++||+++|+|+||||||||+ ++|+|+.. ....|.+...+
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLl-k~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFA-RAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCcEEEECCEE
Confidence 468999999999952 5699999999999999999999999999999 99999732 11222111110
Q ss_pred c---------ccccccceeeeecc-cccc------------------------------cccccCc-hHHHHHH------
Q 023563 116 K---------DTRYGLDSIVTHDG-VKLP------------------------------CCALTTL-SSFRQKF------ 148 (280)
Q Consensus 116 ~---------~~~~~~~~v~~~~~-~~~~------------------------------~~~~~~l-~~~~~~~------ 148 (280)
. ..+..+++++|... .+.+ .+...++ ..+.+++
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 0 01122333333210 0000 0111122 1122221
Q ss_pred --------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEE
Q 023563 149 --------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTK 214 (280)
Q Consensus 149 --------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~ 214 (280)
|+||+.+|++||+|||++.+ +++++|+++.++.|.|+|++|||++++.+ +||+|++
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~----------~~dri~v 234 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKH----------ISDRVLV 234 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hCCEEEE
Confidence 67899999999999997654 58889999987669999999999999986 9999999
Q ss_pred eec-eeccccCcceeee
Q 023563 215 LTA-RCEFCGKRAFFTL 230 (280)
Q Consensus 215 L~~-~i~~~g~~~~~~~ 230 (280)
|.+ ++++.|+++++..
T Consensus 235 l~~G~ive~g~~~~i~~ 251 (331)
T PRK15079 235 MYLGHAVELGTYDEVYH 251 (331)
T ss_pred EECCEEEEEcCHHHHHc
Confidence 999 9999999888764
No 63
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.9e-29 Score=223.28 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=117.7
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-------cccccccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-------KDTRYGLD 123 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-------~~~~~~~~ 123 (280)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.... ...+..++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTF-YMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 79999999999988999999999999999999999999999999 99999732 22222211100 00111222
Q ss_pred eeeeeccccc----------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563 124 SIVTHDGVKL----------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGI 161 (280)
Q Consensus 124 ~v~~~~~~~~----------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlL 161 (280)
++++...... ..+...++....++. |++++.+|++|||
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILL 161 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2222211000 001111222211111 5689999999999
Q ss_pred eCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 162 DEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 162 DEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||++.. .+++.+.+++++ |.|||++||+++++.+ +||++++|++ ++++.|+++++.
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~sH~~~~~~~----------~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 162 DEPFAGVDPISVIDIKRIIEHLRDS-GLGVLITDHNVRETLA----------VCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHH----------hcCEEEEEeCCeEEeeCCHHHHh
Confidence 9997644 477888888764 9999999999998876 9999999999 998899988776
No 64
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=7.4e-29 Score=217.80 Aligned_cols=162 Identities=23% Similarity=0.166 Sum_probs=111.8
Q ss_pred EEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCe--------------eEEEec
Q 023563 53 VSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGR--------------NVAVIK 113 (280)
Q Consensus 53 l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~--------------~i~~~~ 113 (280)
|+++|++++|++ +.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ... .+++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLL-RIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence 478999999987 7899999999999999999999999999999 99999832 222 234444
Q ss_pred CCccccc--ccceeee---e-cc--------cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563 114 SNKDTRY--GLDSIVT---H-DG--------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ 165 (280)
Q Consensus 114 ~~~~~~~--~~~~v~~---~-~~--------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~ 165 (280)
|...... .+...+. . .. .....+...++.++.++. |++|+.+|++||||||+
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt 159 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF 159 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 4321100 0000000 0 00 000011112232222211 67899999999999997
Q ss_pred cHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee--c-eeccccCc
Q 023563 166 FFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT--A-RCEFCGKR 225 (280)
Q Consensus 166 ~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~--~-~i~~~g~~ 225 (280)
+.. .++++|+++.++.|+|||++||+++++.+ +||++++|+ + +++..++.
T Consensus 160 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~----------~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 160 SALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVF----------LADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH----------hCCEEEEEECCCCEEEEEEEe
Confidence 654 58888888876558999999999998876 999999999 6 77665543
No 65
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.96 E-value=4e-29 Score=220.78 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=116.1
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------ccccccce
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGLDS 124 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~~~ 124 (280)
|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+..... ..+..+++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLL-KTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 4789999999988999999999999999999999999999999 99999832 222222211000 00112223
Q ss_pred eeeecccccc------------------------cccccC-chHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563 125 IVTHDGVKLP------------------------CCALTT-LSSFRQKF--------------GSDAYDQVDVIGIDEAQ 165 (280)
Q Consensus 125 v~~~~~~~~~------------------------~~~~~~-l~~~~~~~--------------a~aL~~~p~lLlLDEP~ 165 (280)
+++....... .+...+ +....++. +++|+.+|++||||||+
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 3222111000 000000 11111111 56899999999999996
Q ss_pred cH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 166 FF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 166 ~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+. ..++++|.+++++.|+|||++||+++++.+ +||++++|++ +++..|+++++.
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~----------~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 160 EGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARE----------LADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEECCHHHcC
Confidence 54 457888888876558999999999999986 8999999999 999888887763
No 66
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=5e-29 Score=226.79 Aligned_cols=172 Identities=15% Similarity=0.105 Sum_probs=123.3
Q ss_pred cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-C-C----eeEEEecCCc-----
Q 023563 52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-K-G----RNVAVIKSNK----- 116 (280)
Q Consensus 52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~-g----~~i~~~~~~~----- 116 (280)
+|+++||+..|.. ..+++||||+|++||++||+|.|||||||+. +.|.|+.. . + ..+.+-..+.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~-~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLA-KAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHH-HHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 4789999999943 5799999999999999999999999999999 88888632 1 1 1222221110
Q ss_pred ----cc-ccccceeeeeccc-------------------------------ccccccccCch---HHHHHH---------
Q 023563 117 ----DT-RYGLDSIVTHDGV-------------------------------KLPCCALTTLS---SFRQKF--------- 148 (280)
Q Consensus 117 ----~~-~~~~~~v~~~~~~-------------------------------~~~~~~~~~l~---~~~~~~--------- 148 (280)
.. ...+++++|.... ....+..+++. ...+.|
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 00 0122334432100 01111122221 122222
Q ss_pred -----hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 149 -----GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 149 -----a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
|.||+.+|++||.||||+++ +++++|+++.++.|.++|+||||+..+.+ +||||++|..
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~----------~aDri~VMYa 229 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAE----------IADRVAVMYA 229 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hcceEEEEEC
Confidence 56899999999999997766 48999999999889999999999999997 9999999999
Q ss_pred -eeccccCcceeeeeecC
Q 023563 218 -RCEFCGKRAFFTLRKTE 234 (280)
Q Consensus 218 -~i~~~g~~~~~~~~~~~ 234 (280)
++++.|++++++..+..
T Consensus 230 G~iVE~g~~~~i~~~P~H 247 (316)
T COG0444 230 GRIVEEGPVEEIFKNPKH 247 (316)
T ss_pred cEEEEeCCHHHHhcCCCC
Confidence 99999999999865443
No 67
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.3e-29 Score=225.80 Aligned_cols=167 Identities=24% Similarity=0.255 Sum_probs=118.7
Q ss_pred ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------cccccc
Q 023563 51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRYGL 122 (280)
Q Consensus 51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~~~ 122 (280)
++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+..... ..+..+
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLL-LHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4799999999996 56799999999999999999999999999999 99999732 122221111000 001122
Q ss_pred ceeeeecc-cc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563 123 DSIVTHDG-VK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 123 ~~v~~~~~-~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl 160 (280)
++++|... .. ...+...++..+.++. |+||+.+|++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll 161 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 33333210 00 0011122232222211 678999999999
Q ss_pred EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||++.+ .++++|++++++ |.|||++|||++++.+ +||++++|++ ++++.|+++++.
T Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 162 LDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAE----------WADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEECCHHHhc
Confidence 99997654 588899998876 9999999999999976 9999999999 999999987543
No 68
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.96 E-value=5.4e-29 Score=218.08 Aligned_cols=159 Identities=20% Similarity=0.213 Sum_probs=111.1
Q ss_pred cEEEcCceEEeCCe----eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cccccc
Q 023563 52 MVSPRPPLFSLQNR----NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYG 121 (280)
Q Consensus 52 ~l~~~~ls~~y~~~----~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~ 121 (280)
||+++|++++|+++ .+++++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.... ...+..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTL-RMLAGLLEPDAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCcCCCCceEEECCEEcccCHHHHHhh
Confidence 58899999999876 799999999999999999999999999999 99999842 22222111100 001112
Q ss_pred cceeeeecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563 122 LDSIVTHDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 122 ~~~v~~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl 160 (280)
++++++..... ...+...++.+..++. +++++.+|++||
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ill 159 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLL 159 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 22222211100 0011122333222221 568999999999
Q ss_pred EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
||||++.. .+++.|+++.++ |.|||++|||++++.+ +||++++|++ +++..
T Consensus 160 lDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~----------~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 160 LDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQEVER----------LCDRVVVLHRGRVVYE 217 (218)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hcCEEEEEECCEEeec
Confidence 99996544 588888888765 9999999999999876 9999999998 77654
No 69
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.96 E-value=8.8e-29 Score=223.05 Aligned_cols=165 Identities=15% Similarity=0.121 Sum_probs=116.5
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee--------------EEEecCC
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN--------------VAVIKSN 115 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~--------------i~~~~~~ 115 (280)
++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. .... +++++|.
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLl-k~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLL-RLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 579999999999988999999999999999999999999999999 99999742 2222 3344443
Q ss_pred ccccc--ccceeee---ec---ccccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH-----
Q 023563 116 KDTRY--GLDSIVT---HD---GVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE----- 168 (280)
Q Consensus 116 ~~~~~--~~~~v~~---~~---~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~----- 168 (280)
..... .+...+. .. ......+...++....++. +++|+.+|++||||||++.+
T Consensus 90 ~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~ 169 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTR 169 (257)
T ss_pred ccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 21100 0000000 00 0000111122232222111 57899999999999997654
Q ss_pred -HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563 169 -DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 169 -~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~ 226 (280)
.+.++|++++++.|.|||++|||++++.+ +||++++|++ +++..++.+
T Consensus 170 ~~l~~~L~~~~~~~~~tviivsHd~~~~~~----------~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 170 IEMQDLIESLWQQHGFTVLLVTHDVSEAVA----------MADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEeecccc
Confidence 47788888876558999999999999876 9999999999 888777654
No 70
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.96 E-value=7.7e-29 Score=221.55 Aligned_cols=166 Identities=17% Similarity=0.191 Sum_probs=118.1
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC--------------c
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN--------------K 116 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~--------------~ 116 (280)
||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-... .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLL-RCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 79999999999988899999999999999999999999999999 99999732 22222111100 0
Q ss_pred ccccccceeeeecccccc----------------------------cccccCchHHHHHH--------------hhhhcc
Q 023563 117 DTRYGLDSIVTHDGVKLP----------------------------CCALTTLSSFRQKF--------------GSDAYD 154 (280)
Q Consensus 117 ~~~~~~~~v~~~~~~~~~----------------------------~~~~~~l~~~~~~~--------------a~aL~~ 154 (280)
..+..++++++....... .+...++....++. |++|+.
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~ 161 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM 161 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc
Confidence 011223333332111000 00111121111111 578999
Q ss_pred CCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcce
Q 023563 155 QVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAF 227 (280)
Q Consensus 155 ~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~ 227 (280)
+|++||||||++.. .+++.|+++.++ |.|||++|||++++.+ +||++++|++ +++..|++++
T Consensus 162 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~ 230 (250)
T PRK11264 162 RPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARD----------VADRAIFMDQGRIVEQGPAKA 230 (250)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH----------hcCEEEEEECCEEEEeCCHHH
Confidence 99999999997654 578888888765 9999999999999876 9999999999 9888888887
Q ss_pred ee
Q 023563 228 FT 229 (280)
Q Consensus 228 ~~ 229 (280)
+.
T Consensus 231 ~~ 232 (250)
T PRK11264 231 LF 232 (250)
T ss_pred Hh
Confidence 65
No 71
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4e-29 Score=232.61 Aligned_cols=170 Identities=15% Similarity=0.113 Sum_probs=121.5
Q ss_pred CccEEEcCceEEeC----------CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--
Q 023563 50 HSMVSPRPPLFSLQ----------NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-- 116 (280)
Q Consensus 50 ~~~l~~~~ls~~y~----------~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-- 116 (280)
.++|+++||++.|+ ...+|+||||+|++||++||+|+||||||||+ ++|.|+.. ....+.+...+.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl-~~l~gl~~p~~G~i~~~g~~l~~ 81 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLA-RLLTMIETPTGGELYYQGQDLLK 81 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHH-HHHHcCCCCCCcEEEECCEEcCc
Confidence 35899999999995 25799999999999999999999999999999 99999732 111121111000
Q ss_pred -------ccccccceeeeecc-cc-----------------------------cccccccCch-HHHHHH----------
Q 023563 117 -------DTRYGLDSIVTHDG-VK-----------------------------LPCCALTTLS-SFRQKF---------- 148 (280)
Q Consensus 117 -------~~~~~~~~v~~~~~-~~-----------------------------~~~~~~~~l~-~~~~~~---------- 148 (280)
..+..+++++|... .+ ...+...++. ..++++
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q 161 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ 161 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHH
Confidence 01122333333210 00 0011112221 122211
Q ss_pred ----hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-
Q 023563 149 ----GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA- 217 (280)
Q Consensus 149 ----a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~- 217 (280)
|+||+.+|++||+|||++.+ .++++|+++.++.|.|+|++|||++++.+ +||+|++|.+
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~----------~adrv~vm~~G 231 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEH----------IADEVMVMYLG 231 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hCCEEEEEECC
Confidence 67899999999999997654 58889999987679999999999999986 9999999999
Q ss_pred eeccccCcceeee
Q 023563 218 RCEFCGKRAFFTL 230 (280)
Q Consensus 218 ~i~~~g~~~~~~~ 230 (280)
++++.|++++++.
T Consensus 232 ~ive~g~~~~~~~ 244 (327)
T PRK11308 232 RCVEKGTKEQIFN 244 (327)
T ss_pred EEEEECCHHHHhc
Confidence 9999999888764
No 72
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3.4e-29 Score=240.82 Aligned_cols=168 Identities=20% Similarity=0.190 Sum_probs=124.7
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCcccccc
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKDTRYG 121 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~~~~~ 121 (280)
.++++++|++|+|++..+|++|||++.+||+++|+|.||||||||+ |+|+|.. ++|+.+.+..+......+
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLm-KiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLM-KILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHH-HHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4589999999999999999999999999999999999999999999 9999973 345544433333233444
Q ss_pred cceeeeeccccccc-------------------------------ccccCc----h------HHHHH----HhhhhccCC
Q 023563 122 LDSIVTHDGVKLPC-------------------------------CALTTL----S------SFRQK----FGSDAYDQV 156 (280)
Q Consensus 122 ~~~v~~~~~~~~~~-------------------------------~~~~~l----~------~~~~~----~a~aL~~~p 156 (280)
+..+.|...+.... +...++ . ...++ .|+|+..++
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~a 164 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDA 164 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCC
Confidence 44444422111000 000000 0 00010 167899999
Q ss_pred CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC-ccee
Q 023563 157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK-RAFF 228 (280)
Q Consensus 157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~-~~~~ 228 (280)
++|||||||+.+ .+++++++++++ |++||++||.++++.+ +||||.+|++ +.+...+ ..++
T Consensus 165 rllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~-Gv~ii~ISHrl~Ei~~----------i~DritVlRDG~~v~~~~~~~~~ 233 (500)
T COG1129 165 RVLILDEPTAALTVKETERLFDLIRRLKAQ-GVAIIYISHRLDEVFE----------IADRITVLRDGRVVGTRPTAAET 233 (500)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHH----------hcCEEEEEeCCEEeeecccccCC
Confidence 999999998753 489999999986 9999999999999987 9999999999 9888888 3555
Q ss_pred e
Q 023563 229 T 229 (280)
Q Consensus 229 ~ 229 (280)
.
T Consensus 234 ~ 234 (500)
T COG1129 234 S 234 (500)
T ss_pred C
Confidence 4
No 73
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.2e-29 Score=231.82 Aligned_cols=172 Identities=15% Similarity=0.090 Sum_probs=122.5
Q ss_pred CCCCCccEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEec----C-
Q 023563 46 PKFIHSMVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIK----S- 114 (280)
Q Consensus 46 ~~~~~~~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~----~- 114 (280)
|....++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....|.+.. .
T Consensus 15 ~~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl-~~L~Gl~~p~~G~I~i~g~~~~~~ 93 (320)
T PRK13631 15 PLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLV-THFNGLIKSKYGTIQVGDIYIGDK 93 (320)
T ss_pred CCCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCeEEECCEEcccc
Confidence 3334568999999999964 3599999999999999999999999999999 99999832 122222110 0
Q ss_pred -----------------Ccccccccceeeeecc-ccccc---------------------------ccccCch-HHHHHH
Q 023563 115 -----------------NKDTRYGLDSIVTHDG-VKLPC---------------------------CALTTLS-SFRQKF 148 (280)
Q Consensus 115 -----------------~~~~~~~~~~v~~~~~-~~~~~---------------------------~~~~~l~-~~~~~~ 148 (280)
....+..+++++|... ..+.. +...++. .+.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 173 (320)
T PRK13631 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS 173 (320)
T ss_pred cccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC
Confidence 0011223444444321 11100 1111221 111111
Q ss_pred --------------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccc
Q 023563 149 --------------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPL 208 (280)
Q Consensus 149 --------------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~ 208 (280)
|++|+.+|++||||||++.+ .+++.|.+++++ |.|||++|||++++.+ +
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TiiivtHd~~~~~~----------~ 242 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLE----------V 242 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHH----------h
Confidence 67899999999999997654 478888888765 9999999999998876 8
Q ss_pred cceEEEeec-eeccccCcceee
Q 023563 209 ADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 209 aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||+|++|++ +++..|+++++.
T Consensus 243 adri~vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 243 ADEVIVMDKGKILKTGTPYEIF 264 (320)
T ss_pred CCEEEEEECCEEEEeCCHHHHh
Confidence 999999999 999999999886
No 74
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.96 E-value=1.2e-28 Score=221.58 Aligned_cols=168 Identities=17% Similarity=0.182 Sum_probs=120.1
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-------------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------------- 115 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------------- 115 (280)
+++|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-...
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 3 ENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFL-RCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred CccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 4579999999999988999999999999999999999999999999 99999832 11222111100
Q ss_pred ------cccccccceeeeecccc----------------------------cccccccCchHHH-HHH------------
Q 023563 116 ------KDTRYGLDSIVTHDGVK----------------------------LPCCALTTLSSFR-QKF------------ 148 (280)
Q Consensus 116 ------~~~~~~~~~v~~~~~~~----------------------------~~~~~~~~l~~~~-~~~------------ 148 (280)
...+..++++++..... ...+...++.... ++.
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv 161 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRV 161 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 00112233333321100 0011112222221 111
Q ss_pred --hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee
Q 023563 149 --GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC 219 (280)
Q Consensus 149 --a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i 219 (280)
+++|+.+|++||||||++.+ .+.++|++++++ |+|||++|||++++.+ +||++++|++ ++
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsH~~~~~~~----------~~d~i~~l~~G~i 230 (257)
T PRK10619 162 SIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARH----------VSSHVIFLHQGKI 230 (257)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH----------hcCEEEEEECCEE
Confidence 67899999999999996654 478888888765 9999999999999986 8999999999 99
Q ss_pred ccccCcceee
Q 023563 220 EFCGKRAFFT 229 (280)
Q Consensus 220 ~~~g~~~~~~ 229 (280)
+..|+++++.
T Consensus 231 ~~~~~~~~~~ 240 (257)
T PRK10619 231 EEEGAPEQLF 240 (257)
T ss_pred EEeCCHHHhh
Confidence 9888888765
No 75
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.4e-29 Score=228.87 Aligned_cols=167 Identities=16% Similarity=0.115 Sum_probs=119.2
Q ss_pred cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----------
Q 023563 52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN---------- 115 (280)
Q Consensus 52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~---------- 115 (280)
.|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+ ++|+|+.. ....+.+....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLI-QNINALLKPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4899999999964 3699999999999999999999999999999 99999832 11222111100
Q ss_pred cccccccceeeeecc-ccc---------------------------ccccccCch-HHHHHH--------------hhhh
Q 023563 116 KDTRYGLDSIVTHDG-VKL---------------------------PCCALTTLS-SFRQKF--------------GSDA 152 (280)
Q Consensus 116 ~~~~~~~~~v~~~~~-~~~---------------------------~~~~~~~l~-~~~~~~--------------a~aL 152 (280)
...+..+++++|... ..+ ..+...++. .+.++. |++|
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 011222333333210 000 011112232 222211 6789
Q ss_pred ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563 153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR 225 (280)
Q Consensus 153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~ 225 (280)
+.+|++||||||++.. .++++|++++++.|+|||++|||++++.+ +||++++|++ ++++.|++
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~----------~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVAR----------YADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEECCH
Confidence 9999999999997654 48888999876569999999999999876 8999999999 99999999
Q ss_pred ceee
Q 023563 226 AFFT 229 (280)
Q Consensus 226 ~~~~ 229 (280)
+++.
T Consensus 231 ~~~~ 234 (286)
T PRK13646 231 KELF 234 (286)
T ss_pred HHHH
Confidence 8876
No 76
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.96 E-value=1e-28 Score=222.65 Aligned_cols=168 Identities=18% Similarity=0.240 Sum_probs=120.1
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC----CeeEEEecCCc---------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK----GRNVAVIKSNK--------- 116 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~----g~~i~~~~~~~--------- 116 (280)
.++|+++||+++|+++.+|+++||+|.+||+++|+||||||||||+ ++|+|+... +..+.+.....
T Consensus 2 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLL-RHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred CcEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHH-HHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 3589999999999999999999999999999999999999999999 999998532 12332211110
Q ss_pred --ccccccceeeeecccccc-----------------------------------cccccCchHHHHHH-----------
Q 023563 117 --DTRYGLDSIVTHDGVKLP-----------------------------------CCALTTLSSFRQKF----------- 148 (280)
Q Consensus 117 --~~~~~~~~v~~~~~~~~~-----------------------------------~~~~~~l~~~~~~~----------- 148 (280)
..+..+.++++....... .+...++....++.
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 160 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQR 160 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHH
Confidence 001123333332111000 00111222111111
Q ss_pred ---hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-e
Q 023563 149 ---GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-R 218 (280)
Q Consensus 149 ---a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~ 218 (280)
+++++.+|++||||||++.+ .+.+.|++++++.|.|||++|||++++.+ +||++++|++ +
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~----------~~d~i~~l~~g~ 230 (262)
T PRK09984 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALR----------YCERIVALRQGH 230 (262)
T ss_pred HHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCE
Confidence 56899999999999997654 47888888876558999999999999876 9999999999 8
Q ss_pred eccccCccee
Q 023563 219 CEFCGKRAFF 228 (280)
Q Consensus 219 i~~~g~~~~~ 228 (280)
++..|+++++
T Consensus 231 i~~~g~~~~~ 240 (262)
T PRK09984 231 VFYDGSSQQF 240 (262)
T ss_pred EEEeCCHHHh
Confidence 9888888775
No 77
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.96 E-value=1.2e-28 Score=229.72 Aligned_cols=173 Identities=13% Similarity=0.067 Sum_probs=124.2
Q ss_pred CCCccEEEcCceEEeC----CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC----CeeEEEecCCcc--
Q 023563 48 FIHSMVSPRPPLFSLQ----NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK----GRNVAVIKSNKD-- 117 (280)
Q Consensus 48 ~~~~~l~~~~ls~~y~----~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~----g~~i~~~~~~~~-- 117 (280)
...++|+++|+++.|+ ...+|+||||+|++||+++|+|+||||||||+ ++|+|+... ...|.+...+..
T Consensus 8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~-~~l~Gl~~p~~~~sG~I~~~G~~i~~~ 86 (330)
T PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTA-FALMGLLAANGRIGGSATFNGREILNL 86 (330)
T ss_pred CCCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHH-HHHHcCCCCCCCCCeEEEECCEECCcC
Confidence 3456899999999994 35799999999999999999999999999999 999998532 233322211100
Q ss_pred -------cc-cccceeeeecc-cc-----------------------------cccccccCchH---HHHHH--------
Q 023563 118 -------TR-YGLDSIVTHDG-VK-----------------------------LPCCALTTLSS---FRQKF-------- 148 (280)
Q Consensus 118 -------~~-~~~~~v~~~~~-~~-----------------------------~~~~~~~~l~~---~~~~~-------- 148 (280)
.+ ..+++++|... .+ ...+...++.. ..+++
T Consensus 87 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~ 166 (330)
T PRK09473 87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGM 166 (330)
T ss_pred CHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHH
Confidence 00 12334443211 00 00011122221 11111
Q ss_pred ------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563 149 ------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT 216 (280)
Q Consensus 149 ------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~ 216 (280)
|+||+.+|++||+|||++.+ +++++|++++++.|.|+|++|||++.+.+ +||+|++|+
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~----------~~Dri~vm~ 236 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAG----------ICDKVLVMY 236 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHH----------hCCEEEEEE
Confidence 67899999999999997654 58889999987779999999999999986 999999999
Q ss_pred c-eeccccCcceeeee
Q 023563 217 A-RCEFCGKRAFFTLR 231 (280)
Q Consensus 217 ~-~i~~~g~~~~~~~~ 231 (280)
+ ++++.|+++++...
T Consensus 237 ~G~ive~g~~~~i~~~ 252 (330)
T PRK09473 237 AGRTMEYGNARDVFYQ 252 (330)
T ss_pred CCEEEEECCHHHHHhC
Confidence 9 99999999888643
No 78
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.1e-29 Score=230.79 Aligned_cols=168 Identities=13% Similarity=0.117 Sum_probs=121.0
Q ss_pred ccEEEcCceEEe----CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-----CCeeEEEecCCcc----
Q 023563 51 SMVSPRPPLFSL----QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-----KGRNVAVIKSNKD---- 117 (280)
Q Consensus 51 ~~l~~~~ls~~y----~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-----~g~~i~~~~~~~~---- 117 (280)
++|+++||+++| +...+|+||||+|.+||+++|+|+||||||||+ ++|.|+.. ....+.+-.++..
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl-~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIA-KAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHH-HHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 479999999999 446799999999999999999999999999999 99999842 2223322111100
Q ss_pred --c----ccccceeeeeccc-----------------------------------ccccccccCchH---HHHHH-----
Q 023563 118 --T----RYGLDSIVTHDGV-----------------------------------KLPCCALTTLSS---FRQKF----- 148 (280)
Q Consensus 118 --~----~~~~~~v~~~~~~-----------------------------------~~~~~~~~~l~~---~~~~~----- 148 (280)
. +..+++++|.... ....+...++.. ..+++
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 0 0123333332110 000111122221 11111
Q ss_pred ---------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEE
Q 023563 149 ---------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVT 213 (280)
Q Consensus 149 ---------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~ 213 (280)
|+||+.+|++||+|||++.+ +++++|+++.++.|.|||+||||++++.+ +||+|+
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~----------~~dri~ 230 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQ----------WADKIN 230 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH----------hCCEEE
Confidence 67899999999999997654 58899999987669999999999999986 999999
Q ss_pred Eeec-eeccccCcceee
Q 023563 214 KLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 214 ~L~~-~i~~~g~~~~~~ 229 (280)
+|.+ +++..|+++++.
T Consensus 231 vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 231 VLYCGQTVETAPSKELV 247 (330)
T ss_pred EEECCEEEEECCHHHHH
Confidence 9999 999999988775
No 79
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.3e-29 Score=226.91 Aligned_cols=165 Identities=15% Similarity=0.134 Sum_probs=117.0
Q ss_pred cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-------ccccccc
Q 023563 52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-------KDTRYGL 122 (280)
Q Consensus 52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-------~~~~~~~ 122 (280)
||+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.... ...+..+
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLA-LHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 589999999995 56799999999999999999999999999999 99999832 22222211110 0011223
Q ss_pred ceeeeeccc-ccc---------------------------cccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563 123 DSIVTHDGV-KLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 123 ~~v~~~~~~-~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLl 160 (280)
+++++.... ... .+...++..+.++. |+||+.+|++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLI 159 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 333332110 000 01111222221111 568999999999
Q ss_pred EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||++.. .+++.|++++++ |.|||++|||++++. .||++++|++ ++++.|+++++.
T Consensus 160 LDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~~tH~~~~~~-----------~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 160 FDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEELH-----------DADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHh-----------hCCEEEEEECCEEEEECCHHHHh
Confidence 99997644 578888888765 999999999999984 7999999999 999999998876
No 80
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.9e-29 Score=224.26 Aligned_cols=168 Identities=18% Similarity=0.217 Sum_probs=119.6
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eEE
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NVA 110 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i~ 110 (280)
++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. +|. .++
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLL-KMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 479999999999988999999999999999999999999999999 99999832 221 234
Q ss_pred EecCCccccc--ccceeeeec-----c-----------cccccccccCchHHHHHH--------------hhhhccCCCE
Q 023563 111 VIKSNKDTRY--GLDSIVTHD-----G-----------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDV 158 (280)
Q Consensus 111 ~~~~~~~~~~--~~~~v~~~~-----~-----------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~l 158 (280)
+++|...... .+...+... . .....+...++..+.++. +++|+.+|++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 168 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC 168 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 4443321100 000000000 0 000011112222222111 5689999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||||++.. .++++|.+++++.|.|||++||+++++.+ +||++++|++ +++..|+++++.
T Consensus 169 llLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~----------~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 169 LLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAAR----------YCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCeEEEecCHHHhc
Confidence 9999997654 47888888876558999999999999976 9999999999 988888888775
No 81
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.96 E-value=5.6e-29 Score=218.30 Aligned_cols=163 Identities=19% Similarity=0.185 Sum_probs=113.5
Q ss_pred EEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cccccccce
Q 023563 53 VSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLDS 124 (280)
Q Consensus 53 l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~~ 124 (280)
|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.... ...+..+++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTL-KMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 578999999987 7899999999999999999999999999999 99999832 22222111100 001111222
Q ss_pred eeeecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeC
Q 023563 125 IVTHDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDE 163 (280)
Q Consensus 125 v~~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDE 163 (280)
+++..... ...+...++....++. +++++.+|++|||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 159 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 22211100 0011112222222211 568999999999999
Q ss_pred cccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 164 AQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 164 P~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
|++.. .+++.|+++++ +.|||++||+++++.+ +||++++|++ +++..|+++++
T Consensus 160 P~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~----------~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 160 PTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEA----------LCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHH----------hcCEEEEEECCEEEecCCHHHc
Confidence 96544 57788888864 6899999999999976 8999999999 98888877654
No 82
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.96 E-value=8.1e-29 Score=210.04 Aligned_cols=160 Identities=21% Similarity=0.204 Sum_probs=121.2
Q ss_pred cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCeeEEEecCC--ccccc
Q 023563 52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRNVAVIKSN--KDTRY 120 (280)
Q Consensus 52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~i~~~~~~--~~~~~ 120 (280)
||+++||+|.|+ ++.+|+||||+|++||++.|+||||||||||+ ++|.+. .++|.+++.++.. +..|.
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTll-kLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLL-KLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHH-HHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 689999999995 46699999999999999999999999999999 999885 3355555544332 22356
Q ss_pred ccceeeeeccccccc---------------------------ccccCchHHHHH--------------HhhhhccCCCEE
Q 023563 121 GLDSIVTHDGVKLPC---------------------------CALTTLSSFRQK--------------FGSDAYDQVDVI 159 (280)
Q Consensus 121 ~~~~v~~~~~~~~~~---------------------------~~~~~l~~~~~~--------------~a~aL~~~p~lL 159 (280)
.++.+||...++... +.++++.+.... .|||++.+|++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL 159 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL 159 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence 667777643322111 222333222221 178999999999
Q ss_pred EEeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 160 GIDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 160 lLDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
|.||||. ..++++++.++... |+||+|+|||.+.+.+ +-.|++.|++ +++...
T Consensus 160 lADEPTGNLDp~~s~~im~lfeeinr~-GtTVl~ATHd~~lv~~----------~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 160 LADEPTGNLDPDLSWEIMRLFEEINRL-GTTVLMATHDLELVNR----------MRHRVLALEDGRLVRDE 219 (223)
T ss_pred eecCCCCCCChHHHHHHHHHHHHHhhc-CcEEEEEeccHHHHHh----------ccCcEEEEeCCEEEecc
Confidence 9999954 55799999999885 9999999999999997 8899999999 876554
No 83
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.96 E-value=8.5e-29 Score=219.74 Aligned_cols=166 Identities=17% Similarity=0.152 Sum_probs=116.0
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----ccccccccee
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLDSI 125 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~~v 125 (280)
+|+++|++++|+++.+|+++||+|.+|++++|+||||||||||+ ++|+|+.. ....+.+-... ...+..+.++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLF-SLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCEEcccCChhhhhhEEEe
Confidence 58899999999988999999999999999999999999999999 99999732 22222111100 0000112222
Q ss_pred eeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCc
Q 023563 126 VTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEA 164 (280)
Q Consensus 126 ~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP 164 (280)
++...... ..+...++....++. |++++.+|++||||||
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 159 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEP 159 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 22111000 001111222111111 5789999999999999
Q ss_pred ccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 165 QFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 165 ~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++.. .+++.|++++++.|.|+|++|||++++. .||++++|++ +++..|+++++.
T Consensus 160 ~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-----------~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 160 TVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIE-----------ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHh-----------hCCEEEEEeCCeEEEeCCHHHHH
Confidence 6654 5788888887545899999999999885 6999999999 888888887765
No 84
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.96 E-value=1.5e-28 Score=213.97 Aligned_cols=159 Identities=17% Similarity=0.182 Sum_probs=110.8
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc----ccccccceeee
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK----DTRYGLDSIVT 127 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~----~~~~~~~~v~~ 127 (280)
|+++|++++|+++.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-.... ..+..+.++++
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTM-KIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 4789999999888999999999999999999999999999999 99999732 122222111100 00111222222
Q ss_pred eccc-----------------------ccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH--
Q 023563 128 HDGV-----------------------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE-- 168 (280)
Q Consensus 128 ~~~~-----------------------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~-- 168 (280)
.... ....+...++....++. +++++.+|++||||||++..
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 159 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 1110 00111222333222222 56899999999999997654
Q ss_pred ----HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 169 ----DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 169 ----~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
.++++|++++++ |.|+|++|||++++.+ +||++++|++ +++..|
T Consensus 160 ~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~----------~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 160 DGIKELRELILSLRDQ-GITVLISSHLLSEIQK----------VADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHH----------hcCEEEEEECCEEEecC
Confidence 578888888774 9999999999999976 8999999999 776543
No 85
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9e-29 Score=220.50 Aligned_cols=167 Identities=17% Similarity=0.145 Sum_probs=118.6
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC------cccccccce
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------KDTRYGLDS 124 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------~~~~~~~~~ 124 (280)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.... ...+..+++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLI-KLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 58999999999888899999999999999999999999999999 99999732 22222111100 001112222
Q ss_pred eeeeccc----------------------ccccccccCch-HHHHHH--------------hhhhccCCCEEEEeCcccH
Q 023563 125 IVTHDGV----------------------KLPCCALTTLS-SFRQKF--------------GSDAYDQVDVIGIDEAQFF 167 (280)
Q Consensus 125 v~~~~~~----------------------~~~~~~~~~l~-~~~~~~--------------a~aL~~~p~lLlLDEP~~~ 167 (280)
+++.... ....+...++. .+.++. +++++.+|++||||||++.
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 161 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSA 161 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 2221100 00011112232 122221 6789999999999999755
Q ss_pred H------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 168 E------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 168 ~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
. .+++.|++++++.|.|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 162 LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 162 LDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKR----------IGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHH----------hCCEEEEEeCCEEEEeCCHHHHh
Confidence 4 47888888876559999999999999876 9999999999 888888888776
No 86
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.96 E-value=8.3e-29 Score=217.99 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=109.5
Q ss_pred cEEEcCceEEeCCe----eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC---------cc
Q 023563 52 MVSPRPPLFSLQNR----NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN---------KD 117 (280)
Q Consensus 52 ~l~~~~ls~~y~~~----~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~---------~~ 117 (280)
+|+++||+++|+++ .+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.... ..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLA-RAILGLLKPTSGSIIFDGKDLLKLSRRLRKI 79 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEccccchhhHHH
Confidence 57899999999765 799999999999999999999999999999 99999732 11111111100 00
Q ss_pred cccccceeeeeccc-cc------------------------------ccccccCch-HHHHHH--------------hhh
Q 023563 118 TRYGLDSIVTHDGV-KL------------------------------PCCALTTLS-SFRQKF--------------GSD 151 (280)
Q Consensus 118 ~~~~~~~v~~~~~~-~~------------------------------~~~~~~~l~-~~~~~~--------------a~a 151 (280)
.+..++++++.... .. ..+...++. .+.++. +++
T Consensus 80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 159 (228)
T cd03257 80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA 159 (228)
T ss_pred hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence 11122222222100 00 001111221 111111 578
Q ss_pred hccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 152 AYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
|+.+|++||||||++. ..+++.|++++++.|.|||++|||++++.+ +||++++|++ +++..
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~----------~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAK----------IADRVAVMYAGKIVEE 227 (228)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hcCeEEEEeCCEEEec
Confidence 9999999999999754 458888888876558999999999999976 8999999998 76544
No 87
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7e-29 Score=228.89 Aligned_cols=166 Identities=17% Similarity=0.161 Sum_probs=120.3
Q ss_pred cEEEcCceEEeCCe-----eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----------
Q 023563 52 MVSPRPPLFSLQNR-----NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN---------- 115 (280)
Q Consensus 52 ~l~~~~ls~~y~~~-----~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~---------- 115 (280)
+|+++|++++|++. .+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl-~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFI-EHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCcEEEEeceecccccccccc
Confidence 48999999999753 599999999999999999999999999999 99999843 22222221000
Q ss_pred --------------------cccccccceeeeecc-ccc---------------------------ccccccCch-HHHH
Q 023563 116 --------------------KDTRYGLDSIVTHDG-VKL---------------------------PCCALTTLS-SFRQ 146 (280)
Q Consensus 116 --------------------~~~~~~~~~v~~~~~-~~~---------------------------~~~~~~~l~-~~~~ 146 (280)
...+..+++++|... .++ ..+...++. .+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 011223444554311 000 011122332 2222
Q ss_pred HH--------------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccc
Q 023563 147 KF--------------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDII 206 (280)
Q Consensus 147 ~~--------------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll 206 (280)
+. |++|+.+|++||||||++.+ .++++|++++++ |.|||++|||++++.+
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~--------- 230 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLE--------- 230 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeeCHHHHHH---------
Confidence 21 56899999999999997644 588899988865 9999999999999876
Q ss_pred cccceEEEeec-eeccccCcceee
Q 023563 207 PLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 207 ~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+||+|++|++ ++++.|+++++.
T Consensus 231 -~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 231 -WTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred -hCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999 999999999887
No 88
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7.6e-29 Score=222.61 Aligned_cols=166 Identities=19% Similarity=0.249 Sum_probs=118.4
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCe-------------------eEEE
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGR-------------------NVAV 111 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~-------------------~i~~ 111 (280)
||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ... .+++
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLL-KCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHH-HHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 68999999999988999999999999999999999999999999 99999732 112 2344
Q ss_pred ecCCcccccc--cceeeeec--------c--------cccccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563 112 IKSNKDTRYG--LDSIVTHD--------G--------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVI 159 (280)
Q Consensus 112 ~~~~~~~~~~--~~~v~~~~--------~--------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lL 159 (280)
++|....... +...+... . .....+...++..+.++. ++|++.+|++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 160 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVV 160 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 4443211100 00000000 0 000011112222221111 67899999999
Q ss_pred EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||||++.. .+++.|++++++ |+|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~l~~~-~~tiii~tH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 161 LLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASR----------YCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHH----------hcCEEEEEECCeEEEEcCHHHhc
Confidence 999997554 478888888765 9999999999999876 9999999999 988888888775
No 89
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=3.1e-29 Score=226.73 Aligned_cols=176 Identities=19% Similarity=0.201 Sum_probs=136.7
Q ss_pred cEEEcCceEEeCCe------------------------eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch----
Q 023563 52 MVSPRPPLFSLQNR------------------------NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---- 103 (280)
Q Consensus 52 ~l~~~~ls~~y~~~------------------------~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---- 103 (280)
.|+++|++|-||++ ..++|+||+|++|||+.|+|-||||||||+ ++++++.
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLv-R~~NrLiept~ 82 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLV-RLLNRLIEPTR 82 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHH-HHHhccCCCCC
Confidence 58899999988642 358999999999999999999999999999 9999983
Q ss_pred ----hCCeeEEEecCCcc---cccccceeeeecccc---------------------------cccccccCchHHHHHH-
Q 023563 104 ----QKGRNVAVIKSNKD---TRYGLDSIVTHDGVK---------------------------LPCCALTTLSSFRQKF- 148 (280)
Q Consensus 104 ----~~g~~i~~~~~~~~---~~~~~~~v~~~~~~~---------------------------~~~~~~~~l~~~~~~~- 148 (280)
+.|+++.-+..... .+..+..+||+.+++ ..++..+++..+.+++
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP 162 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc
Confidence 34555443332211 123345566543322 1123455666666655
Q ss_pred -------------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCcccccccc
Q 023563 149 -------------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLA 209 (280)
Q Consensus 149 -------------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~a 209 (280)
||||+.+|++||||||++++ ++.+.|.++.++.++||||+|||+++|.+ +.
T Consensus 163 ~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlr----------iG 232 (386)
T COG4175 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALR----------IG 232 (386)
T ss_pred ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHh----------cc
Confidence 68999999999999998765 58889999998899999999999999987 99
Q ss_pred ceEEEeec-eeccccCcceeeeeecCCCcE
Q 023563 210 DSVTKLTA-RCEFCGKRAFFTLRKTEETKT 238 (280)
Q Consensus 210 D~i~~L~~-~i~~~g~~~~~~~~~~~~~~~ 238 (280)
|||.+|++ +++.+|+|+|+...+.++...
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 99999999 999999999999766655443
No 90
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7.2e-29 Score=225.68 Aligned_cols=168 Identities=17% Similarity=0.218 Sum_probs=119.7
Q ss_pred ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------cccccc
Q 023563 51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRYGL 122 (280)
Q Consensus 51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~~~ 122 (280)
.+|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+..... ..+..+
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLF-RHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 3799999999995 56799999999999999999999999999999 99999832 222222211100 011122
Q ss_pred ceeeeecc-ccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563 123 DSIVTHDG-VKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 123 ~~v~~~~~-~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl 160 (280)
+++++... ..+ ..+...++....++. |++|+.+|++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~lli 160 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV 160 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 33332210 000 001111222221111 578999999999
Q ss_pred EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||++.. .++++|++++++.|.|||++||+++++.+ +||++++|++ ++++.|+++++.
T Consensus 161 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~----------~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 161 LDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPE----------MADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH----------hCCEEEEEECCeEEEECCHHHHh
Confidence 99997654 57888888877568999999999999976 9999999999 999999998886
No 91
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.96 E-value=7.6e-29 Score=216.57 Aligned_cols=158 Identities=22% Similarity=0.243 Sum_probs=111.6
Q ss_pred EEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC-------eeEEEecCCccc
Q 023563 54 SPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG-------RNVAVIKSNKDT 118 (280)
Q Consensus 54 ~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g-------~~i~~~~~~~~~ 118 (280)
+++|++++|+++.+++++||+|++|++++|+||||||||||+ ++|+|+.. +| +.+++++|+...
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLL-KAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 368999999988899999999999999999999999999999 99999832 22 235666655321
Q ss_pred c----cccceeee--ecc--------------cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCc
Q 023563 119 R----YGLDSIVT--HDG--------------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEA 164 (280)
Q Consensus 119 ~----~~~~~v~~--~~~--------------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP 164 (280)
. ..+...+. ... .....+...++..+.++. +++|+.+|++||||||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0 01100000 000 000111122332222221 5789999999999999
Q ss_pred ccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceecccc
Q 023563 165 QFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCG 223 (280)
Q Consensus 165 ~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g 223 (280)
++.+ .+.+.|++++++ |.|||++|||++++.+ +||++++|++++++.|
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~-~~tvi~~sH~~~~~~~----------~~d~i~~l~~~~~~~g 213 (213)
T cd03235 160 FAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLE----------YFDRVLLLNRTVVASG 213 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH----------hcCEEEEEcCcEeecC
Confidence 7654 478888888774 9999999999999976 9999999988665544
No 92
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.4e-29 Score=243.14 Aligned_cols=168 Identities=16% Similarity=0.120 Sum_probs=119.8
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------ccccc
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYG 121 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~ 121 (280)
.++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+..... ..+..
T Consensus 3 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 3 TPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLM-KVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred CceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 3589999999999988999999999999999999999999999999 99999842 222222111000 00112
Q ss_pred cceeeeeccccc----------------------------------ccccccCchHHHHHH--------------hhhhc
Q 023563 122 LDSIVTHDGVKL----------------------------------PCCALTTLSSFRQKF--------------GSDAY 153 (280)
Q Consensus 122 ~~~v~~~~~~~~----------------------------------~~~~~~~l~~~~~~~--------------a~aL~ 153 (280)
+++++|...... ..+...++.+..++. |++|+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~ 161 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLM 161 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHh
Confidence 333333211000 000011111111111 67899
Q ss_pred cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563 154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~ 226 (280)
.+|++||||||++.+ .++++|++++++ |+|||++|||++++.+ +||++++|++ ++++.|+++
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~~~~~~----------~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRR----------ICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEeeecchh
Confidence 999999999997654 588899999876 9999999999999986 9999999999 999999888
Q ss_pred eee
Q 023563 227 FFT 229 (280)
Q Consensus 227 ~~~ 229 (280)
++.
T Consensus 231 ~~~ 233 (510)
T PRK09700 231 DVS 233 (510)
T ss_pred hCC
Confidence 764
No 93
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.96 E-value=2.7e-28 Score=219.40 Aligned_cols=169 Identities=18% Similarity=0.098 Sum_probs=121.1
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cc------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KD------ 117 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~------ 117 (280)
.++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.... ..
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 4 QPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLL-NALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred CceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 3489999999999888899999999999999999999999999999 99999732 22233222211 00
Q ss_pred ----cccccceeeeeccc-cc-----------------------------ccccccCch-HHHHHH--------------
Q 023563 118 ----TRYGLDSIVTHDGV-KL-----------------------------PCCALTTLS-SFRQKF-------------- 148 (280)
Q Consensus 118 ----~~~~~~~v~~~~~~-~~-----------------------------~~~~~~~l~-~~~~~~-------------- 148 (280)
.+..++++++.... .. ..+...++. ...++.
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l 162 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence 01123334332210 00 000111121 111111
Q ss_pred hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563 149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF 221 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~ 221 (280)
|++|+.+|++||||||++.+ .+++.|++++++.|.|||++|||++++.+ +||++++|++ +++.
T Consensus 163 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~----------~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 163 ARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARL----------LAHRLLVMKQGRVVE 232 (258)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH----------hcCEEEEEECCEEEE
Confidence 67899999999999997654 47888888876558999999999999986 8999999999 9999
Q ss_pred ccCcceee
Q 023563 222 CGKRAFFT 229 (280)
Q Consensus 222 ~g~~~~~~ 229 (280)
.|+++++.
T Consensus 233 ~~~~~~~~ 240 (258)
T PRK11701 233 SGLTDQVL 240 (258)
T ss_pred eCCHHHHh
Confidence 99888776
No 94
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.96 E-value=1.4e-28 Score=218.87 Aligned_cols=166 Identities=20% Similarity=0.199 Sum_probs=117.0
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------cccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGL 122 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~ 122 (280)
++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+..... ..+..+
T Consensus 1 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMM-DVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred CeEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 378999999999988899999999999999999999999999999 99999732 222222211100 001122
Q ss_pred ceeeeeccccc-----------------------------------ccccccCchHHHHHH--------------hhhhc
Q 023563 123 DSIVTHDGVKL-----------------------------------PCCALTTLSSFRQKF--------------GSDAY 153 (280)
Q Consensus 123 ~~v~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~--------------a~aL~ 153 (280)
+++++...... ..+...++....++. +++++
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~ 159 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLM 159 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 33332111000 000111111111111 56899
Q ss_pred cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563 154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~ 226 (280)
.+|++||||||++.. .++++|+++.+ ++|||++||+++++.+ +||++++|++ +++..|+++
T Consensus 160 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~----------~~d~i~~l~~g~~~~~~~~~ 227 (242)
T TIGR03411 160 QDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRS----------IADKVTVLHQGSVLAEGSLD 227 (242)
T ss_pred cCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHH----------hCCEEEEEECCeEEeeCCHH
Confidence 999999999997644 57888888864 6899999999999986 9999999999 988888887
Q ss_pred eee
Q 023563 227 FFT 229 (280)
Q Consensus 227 ~~~ 229 (280)
++.
T Consensus 228 ~~~ 230 (242)
T TIGR03411 228 QVQ 230 (242)
T ss_pred HHh
Confidence 765
No 95
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.9e-29 Score=223.54 Aligned_cols=169 Identities=17% Similarity=0.201 Sum_probs=120.0
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee-------------------E
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN-------------------V 109 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~-------------------i 109 (280)
..+|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+ ++|+|+.. .... +
T Consensus 5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLL-RTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 3479999999999988999999999999999999999999999999 99999732 1222 3
Q ss_pred EEecCCccccc--ccceeee-----ecc-----------cccccccccCchHHHHHH--------------hhhhccCCC
Q 023563 110 AVIKSNKDTRY--GLDSIVT-----HDG-----------VKLPCCALTTLSSFRQKF--------------GSDAYDQVD 157 (280)
Q Consensus 110 ~~~~~~~~~~~--~~~~v~~-----~~~-----------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~ 157 (280)
+|++|...... .+...+. ... .....+...++..+..+. |+|++.+|+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 163 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETA 163 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCC
Confidence 33333321100 0000000 000 000011111222221111 678999999
Q ss_pred EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+||||||++.. .++++|.++.++.|.|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 164 llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 164 IMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACR----------YASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999997654 47888888876558999999999999876 9999999999 999999988775
No 96
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=2.6e-29 Score=211.71 Aligned_cols=170 Identities=16% Similarity=0.183 Sum_probs=132.8
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCeeEEEecCCc------
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRNVAVIKSNK------ 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~i~~~~~~~------ 116 (280)
+.|+++|+.|+||...+|++|||+-.+|+++.|||.|||||||++ +||+-+ ..+|..+...+...
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfL-RCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFL-RCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHH-HHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 469999999999999999999999999999999999999999999 999876 23455554333221
Q ss_pred ------ccccccceeeeeccccccc----------------------------ccccCchHHHHHH--------------
Q 023563 117 ------DTRYGLDSIVTHDGVKLPC----------------------------CALTTLSSFRQKF-------------- 148 (280)
Q Consensus 117 ------~~~~~~~~v~~~~~~~~~~----------------------------~~~~~l~~~~~~~-------------- 148 (280)
..|..++.+||+.+++... +...++.+..+.|
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aI 163 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAI 163 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHH
Confidence 1134456677765542211 1112222222222
Q ss_pred hhhhccCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563 149 GSDAYDQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF 221 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~ 221 (280)
||||+.+|+++|+||||+++| ++..+++++++ |+|+++|||.+.++++ ++.+|++|.. .+..
T Consensus 164 ARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR~----------Vss~v~fLh~G~iEE 232 (256)
T COG4598 164 ARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARD----------VSSHVIFLHQGKIEE 232 (256)
T ss_pred HHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhHHHh----------hhhheEEeecceecc
Confidence 679999999999999998864 88899999998 9999999999999997 9999999999 9999
Q ss_pred ccCcceeeeee
Q 023563 222 CGKRAFFTLRK 232 (280)
Q Consensus 222 ~g~~~~~~~~~ 232 (280)
.|+|++++..+
T Consensus 233 ~G~P~qvf~nP 243 (256)
T COG4598 233 EGPPEQVFGNP 243 (256)
T ss_pred cCChHHHhcCC
Confidence 99999999443
No 97
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.9e-28 Score=218.23 Aligned_cols=166 Identities=17% Similarity=0.219 Sum_probs=118.3
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC------------ccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------------KDT 118 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------------~~~ 118 (280)
+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-... ...
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLL-RVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 68999999999988999999999999999999999999999999 99999842 22223221110 001
Q ss_pred ccccceeeeecccccc----------------------------cccccCchHHHHHH--------------hhhhccCC
Q 023563 119 RYGLDSIVTHDGVKLP----------------------------CCALTTLSSFRQKF--------------GSDAYDQV 156 (280)
Q Consensus 119 ~~~~~~v~~~~~~~~~----------------------------~~~~~~l~~~~~~~--------------a~aL~~~p 156 (280)
+..++++++....... .+...++..+.++. +++++.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 1223333332111000 01111222221111 56899999
Q ss_pred CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++||||||++.. .+++.|+++.++ |+|+|++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 161 ~llilDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~----------~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 161 QVLLFDEPTAALDPEITAQIVSIIRELAET-GITQVIVTHEVEVARK----------TASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred CEEEEcCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHH----------hcCEEEEEECCEEEEeCCHHHhc
Confidence 999999997644 478888888764 9999999999999876 8999999999 888888877654
No 98
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=9.9e-29 Score=225.09 Aligned_cols=168 Identities=15% Similarity=0.135 Sum_probs=119.4
Q ss_pred CccEEEcCceEEeCC------eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-------
Q 023563 50 HSMVSPRPPLFSLQN------RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------- 115 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~------~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------- 115 (280)
++||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+ ++|.|+.. ....+.+-...
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIA-KHMNALLIPSEGKVYVDGLDTSDEENL 80 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEeccccccH
Confidence 458999999999963 5699999999999999999999999999999 99999833 22222211100
Q ss_pred cccccccceeeeecc-ccc---------------------------ccccccCchHHHHHH--------------hhhhc
Q 023563 116 KDTRYGLDSIVTHDG-VKL---------------------------PCCALTTLSSFRQKF--------------GSDAY 153 (280)
Q Consensus 116 ~~~~~~~~~v~~~~~-~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~ 153 (280)
...+..++++++... ... ..+...++..+.++. |++|+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~ 160 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILA 160 (280)
T ss_pred HHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 011222333333211 000 001111222222211 56899
Q ss_pred cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563 154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~ 226 (280)
.+|++||||||++.+ .+++.|++++++.|.|||++|||++++. .||++++|++ +++..|+++
T Consensus 161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~-----------~~d~v~~l~~G~i~~~g~~~ 229 (280)
T PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAV-----------EADRIIVMDSGKVVMEGTPK 229 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHh-----------cCCEEEEEECCEEEEecCHH
Confidence 999999999997654 5888899887655999999999999885 5999999999 999999998
Q ss_pred eee
Q 023563 227 FFT 229 (280)
Q Consensus 227 ~~~ 229 (280)
++.
T Consensus 230 ~~~ 232 (280)
T PRK13633 230 EIF 232 (280)
T ss_pred HHh
Confidence 886
No 99
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=3.3e-28 Score=216.35 Aligned_cols=166 Identities=15% Similarity=0.162 Sum_probs=118.1
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--------cccccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--------DTRYGL 122 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--------~~~~~~ 122 (280)
||+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-.... ..+..+
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLL-RCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 58899999999988899999999999999999999999999999 99999832 222222111000 001123
Q ss_pred ceeeeeccccc----------------------------ccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563 123 DSIVTHDGVKL----------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 123 ~~v~~~~~~~~----------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl 160 (280)
+++++...... ..+...++....++. |++++.+|++||
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 159 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLML 159 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 33333211100 001111222211111 568999999999
Q ss_pred EeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 161 IDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 161 LDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||++. ..++++|++++++ |+|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 160 lDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 160 FDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEK----------VASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEeeCCHHHHh
Confidence 9999654 4578888888765 9999999999999976 8999999999 998888887765
No 100
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.9e-29 Score=226.20 Aligned_cols=166 Identities=15% Similarity=0.126 Sum_probs=118.1
Q ss_pred cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----------
Q 023563 52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN---------- 115 (280)
Q Consensus 52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~---------- 115 (280)
+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLM-QHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEECccccccchH
Confidence 5899999999974 4699999999999999999999999999999 99999832 11222111100
Q ss_pred cccccccceeeeecc-cc---------------------------cccccccCch-HHHHHH--------------hhhh
Q 023563 116 KDTRYGLDSIVTHDG-VK---------------------------LPCCALTTLS-SFRQKF--------------GSDA 152 (280)
Q Consensus 116 ~~~~~~~~~v~~~~~-~~---------------------------~~~~~~~~l~-~~~~~~--------------a~aL 152 (280)
...+..++++++... .. ...+...++. .+.++. |++|
T Consensus 81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 001122333333210 00 0001112332 222221 5789
Q ss_pred ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563 153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR 225 (280)
Q Consensus 153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~ 225 (280)
+.+|++||||||++.. .+.++|++++++ |.|||++|||++++.+ +||++++|++ +++..|++
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tvlivsH~~~~~~~----------~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAE----------YADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCCH
Confidence 9999999999997654 578888888765 9999999999999986 9999999999 99999998
Q ss_pred ceee
Q 023563 226 AFFT 229 (280)
Q Consensus 226 ~~~~ 229 (280)
+++.
T Consensus 230 ~~~~ 233 (287)
T PRK13641 230 KEIF 233 (287)
T ss_pred HHHh
Confidence 8876
No 101
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3e-28 Score=219.21 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=112.3
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee--------------EEEecCCc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN--------------VAVIKSNK 116 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~--------------i~~~~~~~ 116 (280)
||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. .... +++++|..
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLL-NLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence 58999999999888899999999999999999999999999999 99999832 2222 33444332
Q ss_pred cccc--ccceeee---e-cc--------cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH
Q 023563 117 DTRY--GLDSIVT---H-DG--------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE 168 (280)
Q Consensus 117 ~~~~--~~~~v~~---~-~~--------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~ 168 (280)
.... .+...+. . .. .....+...++....++. +++|+.+|++||||||++.+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~L 159 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL 159 (255)
T ss_pred ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 1100 0000000 0 00 000011112222222111 56899999999999997654
Q ss_pred ------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee--c-eeccccCc
Q 023563 169 ------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT--A-RCEFCGKR 225 (280)
Q Consensus 169 ------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~--~-~i~~~g~~ 225 (280)
.++++|++++++.|.|||++|||++++.+ +||++++|+ + +++..++.
T Consensus 160 D~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~----------~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 160 DAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVF----------MATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEeCCCcEEEEEecC
Confidence 57888888865458999999999999986 999999997 4 66665554
No 102
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.6e-29 Score=235.62 Aligned_cols=167 Identities=17% Similarity=0.136 Sum_probs=114.4
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------c----cccc
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------D----TRYG 121 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~----~~~~ 121 (280)
++.+++.+.|+...+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-..+. . .+..
T Consensus 29 ~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLL-r~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ 107 (400)
T PRK10070 29 LSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMV-RLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107 (400)
T ss_pred ccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHH-HHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCC
Confidence 3444444444444589999999999999999999999999999 99999842 222222111100 0 0123
Q ss_pred cceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563 122 LDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 122 ~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl 160 (280)
+++++|+..... ..+...++..+.++. |+||+.+|++||
T Consensus 108 igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLL 187 (400)
T PRK10070 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILL 187 (400)
T ss_pred EEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 344444321110 011112222222221 678999999999
Q ss_pred EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563 161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL 230 (280)
Q Consensus 161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~ 230 (280)
||||++.+ .++++|.++.++.|+|||++|||++++.+ +||+|++|++ +++..|+++++..
T Consensus 188 LDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~----------~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 188 MDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMR----------IGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHH----------hCCEEEEEECCEEEecCCHHHHHh
Confidence 99997654 58888888876569999999999999976 9999999999 9999999888763
No 103
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.96 E-value=1.3e-28 Score=222.48 Aligned_cols=167 Identities=14% Similarity=0.093 Sum_probs=117.8
Q ss_pred cEEEcCceEEeC---------CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-----
Q 023563 52 MVSPRPPLFSLQ---------NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK----- 116 (280)
Q Consensus 52 ~l~~~~ls~~y~---------~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~----- 116 (280)
||+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLA-RLLLGLEKPAQGTVSFRGQDLYQLDR 80 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEccccCH
Confidence 689999999995 36799999999999999999999999999999 99999832 111121111000
Q ss_pred ----ccccccceeeeecc-cc-----------------------------cccccccCch-HHHHHH-------------
Q 023563 117 ----DTRYGLDSIVTHDG-VK-----------------------------LPCCALTTLS-SFRQKF------------- 148 (280)
Q Consensus 117 ----~~~~~~~~v~~~~~-~~-----------------------------~~~~~~~~l~-~~~~~~------------- 148 (280)
..+..++++++... .. ...+...++. .+.++.
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence 00112222222210 00 0011112221 111111
Q ss_pred -hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563 149 -GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE 220 (280)
Q Consensus 149 -a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~ 220 (280)
|++|+.+|++||||||++.+ .+++.|++++++.|+|||++|||++++.+ +||++++|++ +++
T Consensus 161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~----------~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQS----------FCQRVAVMDKGQIV 230 (265)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH----------HhcEEEEEeCCEEE
Confidence 67899999999999997654 47888888876558999999999999986 9999999999 999
Q ss_pred cccCcceee
Q 023563 221 FCGKRAFFT 229 (280)
Q Consensus 221 ~~g~~~~~~ 229 (280)
..|+++++.
T Consensus 231 ~~g~~~~~~ 239 (265)
T TIGR02769 231 EECDVAQLL 239 (265)
T ss_pred EECCHHHHc
Confidence 999988876
No 104
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.7e-28 Score=212.63 Aligned_cols=158 Identities=23% Similarity=0.197 Sum_probs=109.8
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCe---------------eEEEecCCc
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGR---------------NVAVIKSNK 116 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~---------------~i~~~~~~~ 116 (280)
|+++|+++.|+++.+++++||+|.+|++++|+||||||||||+ ++|+|+.. ... .+++++|..
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTI-RMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 4789999999988999999999999999999999999999999 99999732 222 234444432
Q ss_pred cccc--ccceeee---e-cc--------cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH
Q 023563 117 DTRY--GLDSIVT---H-DG--------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE 168 (280)
Q Consensus 117 ~~~~--~~~~v~~---~-~~--------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~ 168 (280)
.... .+...+. . .. .....+...++....++. +++++.+|++||||||++..
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L 159 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 1110 0000000 0 00 000011112222222111 56899999999999997654
Q ss_pred ------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 169 ------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 169 ------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
.+++.|++++++ |.|||++|||++++.+ +||++++|++ +++..
T Consensus 160 D~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~----------~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 160 DPVNVELLKDVIRELARA-GKTVILSTHQMELVEE----------LCDRVLLLNKGRAVLY 209 (210)
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHH----------hhhEEEEEeCCEEEec
Confidence 478888888765 8999999999999876 8999999998 76543
No 105
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1e-28 Score=225.02 Aligned_cols=167 Identities=19% Similarity=0.192 Sum_probs=118.9
Q ss_pred ccEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------cccc
Q 023563 51 SMVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRY 120 (280)
Q Consensus 51 ~~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~ 120 (280)
++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-.... ..+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTV-RLIDGLLEAESGQIIIDGDLLTEENVWDIRH 81 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEECCcCcHHHHHh
Confidence 37999999999963 4699999999999999999999999999999 99999832 222221111000 0112
Q ss_pred ccceeeeecc-cc---------------------------cccccccCchHHHHHH--------------hhhhccCCCE
Q 023563 121 GLDSIVTHDG-VK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDV 158 (280)
Q Consensus 121 ~~~~v~~~~~-~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~l 158 (280)
.+++++|... .. ...+...++..+.++. |++|+.+|++
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 161 (279)
T PRK13650 82 KIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI 161 (279)
T ss_pred hceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 2333333211 00 0011112232222211 6789999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||||++.+ .+++.|++++++.|+|||++|||++++. +||++++|++ +++..|+++++.
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-----------~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-----------LSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence 9999997654 5888899988756999999999999884 7999999999 999999998876
No 106
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.96 E-value=1.3e-28 Score=215.00 Aligned_cols=154 Identities=19% Similarity=0.165 Sum_probs=106.8
Q ss_pred cEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------cccc
Q 023563 52 MVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------DTRY 120 (280)
Q Consensus 52 ~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~~~~ 120 (280)
||+++|++++| +++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-.... ..+.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLL-KLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 58999999999 567899999999999999999999999999999 99999832 222222111000 0011
Q ss_pred ccceeeeecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563 121 GLDSIVTHDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVI 159 (280)
Q Consensus 121 ~~~~v~~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lL 159 (280)
.++++++..... ...+...++....++. +++|+.+|++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLL 159 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 222333221100 0001111222211111 57899999999
Q ss_pred EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
|||||++.. .+++.|++++++ |+|||++||+++++.+ +||++++|++
T Consensus 160 lLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~----------~~d~i~~l~~ 212 (214)
T TIGR02673 160 LADEPTGNLDPDLSERILDLLKRLNKR-GTTVIVATHDLSLVDR----------VAHRVIILDD 212 (214)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHH----------hcCEEEEecC
Confidence 999997654 578888888765 9999999999999986 8999999976
No 107
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.96 E-value=1.9e-28 Score=221.71 Aligned_cols=169 Identities=14% Similarity=0.101 Sum_probs=118.4
Q ss_pred CccEEEcCceEEeCC---------eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----
Q 023563 50 HSMVSPRPPLFSLQN---------RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN---- 115 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~---------~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~---- 115 (280)
++||+++||+++|++ +.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+....
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~ 80 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLA-KMLAGMIEPTSGELLIDDHPLHFG 80 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHH-HHHhCCCCCCCCEEEECCEECCCC
Confidence 468999999999962 4699999999999999999999999999999 99999842 11222111100
Q ss_pred -c-ccccccceeeeeccc------------------------------ccccccccCc-hHHHHHH--------------
Q 023563 116 -K-DTRYGLDSIVTHDGV------------------------------KLPCCALTTL-SSFRQKF-------------- 148 (280)
Q Consensus 116 -~-~~~~~~~~v~~~~~~------------------------------~~~~~~~~~l-~~~~~~~-------------- 148 (280)
. ..+..+++++++... ....+...++ ....++.
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l 160 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGL 160 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHH
Confidence 0 001112222221100 0001112222 1111111
Q ss_pred hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563 149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF 221 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~ 221 (280)
+++++.+|++||||||++.. .+.+.|.+++++.|.|||++||+++++.+ +||++++|++ +++.
T Consensus 161 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~----------~~d~i~~l~~G~i~~ 230 (267)
T PRK15112 161 ARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKH----------ISDQVLVMHQGEVVE 230 (267)
T ss_pred HHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHH----------hcCEEEEEECCEEEe
Confidence 57899999999999997654 57888888876558999999999999986 8999999999 9988
Q ss_pred ccCcceee
Q 023563 222 CGKRAFFT 229 (280)
Q Consensus 222 ~g~~~~~~ 229 (280)
.|+++++.
T Consensus 231 ~~~~~~~~ 238 (267)
T PRK15112 231 RGSTADVL 238 (267)
T ss_pred cCCHHHHh
Confidence 88888776
No 108
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.96 E-value=2e-28 Score=215.88 Aligned_cols=163 Identities=17% Similarity=0.174 Sum_probs=114.8
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-----h-CCeeEEEecCCc--------cc
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-----Q-KGRNVAVIKSNK--------DT 118 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-----~-~g~~i~~~~~~~--------~~ 118 (280)
|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+. . ....+.+..... ..
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLL-RLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 4789999999988999999999999999999999999999999 9999976 3 222222211100 00
Q ss_pred ccccceeeeecccc---------------------------cccccccCchHHHHH----------------HhhhhccC
Q 023563 119 RYGLDSIVTHDGVK---------------------------LPCCALTTLSSFRQK----------------FGSDAYDQ 155 (280)
Q Consensus 119 ~~~~~~v~~~~~~~---------------------------~~~~~~~~l~~~~~~----------------~a~aL~~~ 155 (280)
+..+++++|..... ...+...++.....+ .+++|+.+
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence 11222222211000 001111223222111 16789999
Q ss_pred CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
|++||||||++.. .+++.|++++++ .|||++|||++++.+ +||++++|++ ++++.|+++++
T Consensus 160 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAAR----------VADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHHHHHH----------hCCEEEEEeCCEEEEecCcccC
Confidence 9999999997654 578888888763 899999999999876 9999999999 98888887653
No 109
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.9e-28 Score=218.30 Aligned_cols=167 Identities=13% Similarity=0.100 Sum_probs=118.3
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------- 116 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------- 116 (280)
.|+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-....
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFL-RCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHH-HHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4589999999999988899999999999999999999999999999 99998731 223332211110
Q ss_pred -ccccccceeeeeccccc---------------------------ccccccCchH----HHHH--------------Hhh
Q 023563 117 -DTRYGLDSIVTHDGVKL---------------------------PCCALTTLSS----FRQK--------------FGS 150 (280)
Q Consensus 117 -~~~~~~~~v~~~~~~~~---------------------------~~~~~~~l~~----~~~~--------------~a~ 150 (280)
..+..+++++|...... ..+...++.. ..++ .|+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 162 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 01122333333211000 0001112211 1111 167
Q ss_pred hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
+|+.+|++||||||++.. .+.++|+++. + ++|||++|||++++.+ +||++++|++ +++..|
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~----------~~d~v~~l~~G~i~~~g 230 (253)
T PRK14242 163 ALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQQAAR----------VSDVTAFFYMGKLIEVG 230 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHHHHHH----------hCCEEEEEECCEEEEeC
Confidence 899999999999997654 5788888884 3 7899999999999976 9999999999 888888
Q ss_pred Ccceee
Q 023563 224 KRAFFT 229 (280)
Q Consensus 224 ~~~~~~ 229 (280)
+++++.
T Consensus 231 ~~~~~~ 236 (253)
T PRK14242 231 PTEQIF 236 (253)
T ss_pred CHHHHH
Confidence 888775
No 110
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=1.4e-28 Score=221.54 Aligned_cols=167 Identities=23% Similarity=0.221 Sum_probs=117.0
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------ccccccce
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRYGLDS 124 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~~~~~ 124 (280)
||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+..... ..+..+++
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLL-RALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 68999999999988999999999999999999999999999999 99999732 122221111000 00111222
Q ss_pred eeeecccc---------------------------cccccccCchHHHHHH--------------hhhhc------cCCC
Q 023563 125 IVTHDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAY------DQVD 157 (280)
Q Consensus 125 v~~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~------~~p~ 157 (280)
+++..... ...+...++..+.++. +++|+ .+|+
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~ 160 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR 160 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 22211100 0011112222221111 56788 5999
Q ss_pred EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+||||||++.+ .+.++|++++++.|.|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 161 WLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAAR----------YADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH----------hcCEEEEEECCEEEeeCCHHHHh
Confidence 99999997654 47888888873349999999999999976 9999999999 888888888776
No 111
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.95 E-value=1.1e-28 Score=227.00 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=113.2
Q ss_pred EEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-----ccccccceeeeeccccc
Q 023563 60 FSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-----DTRYGLDSIVTHDGVKL 133 (280)
Q Consensus 60 ~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-----~~~~~~~~v~~~~~~~~ 133 (280)
|+|+++.+|+|+||+|++||++||+||||||||||+ ++|+|+.. ....+.+..... ..+..+++++|......
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTI-RMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence 478888999999999999999999999999999999 99999842 222222211110 11122333333211100
Q ss_pred ---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH----
Q 023563 134 ---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE---- 168 (280)
Q Consensus 134 ---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~---- 168 (280)
..+...++....++. |+||+.+|++||||||++.+
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 159 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRT 159 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 011112222222111 57899999999999997654
Q ss_pred --HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563 169 --DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL 230 (280)
Q Consensus 169 --~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~ 230 (280)
.++++|++++++ |+|||++||+++++.+ +||+|++|++ +++..|+++++..
T Consensus 160 ~~~l~~~l~~~~~~-g~tvi~~sH~~~~~~~----------~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 160 RRAIWDYIRALKEE-GVTILLTTHYMEEADK----------LCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHHhC-CCEEEEECCCHHHHHH----------hCCEEEEEECCEEEEECCHHHHHH
Confidence 588899998875 9999999999999987 9999999999 9999999988753
No 112
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.7e-28 Score=220.63 Aligned_cols=168 Identities=11% Similarity=0.081 Sum_probs=119.4
Q ss_pred CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc------
Q 023563 49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------ 116 (280)
Q Consensus 49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------ 116 (280)
..++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....
T Consensus 18 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFL-RSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHH-HHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 45689999999999988999999999999999999999999999999 99999631 223332211110
Q ss_pred --ccccccceeeeeccccc---------------------------ccccccCc----hHHHHHH--------------h
Q 023563 117 --DTRYGLDSIVTHDGVKL---------------------------PCCALTTL----SSFRQKF--------------G 149 (280)
Q Consensus 117 --~~~~~~~~v~~~~~~~~---------------------------~~~~~~~l----~~~~~~~--------------a 149 (280)
..+..+++++++..... ..+...++ ....++. +
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~la 176 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIA 176 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHH
Confidence 01222334433211100 00000111 0111111 6
Q ss_pred hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
++|+.+|++||||||++.. .++++|+++++ +.|||++|||++++.+ +||++++|++ +++..
T Consensus 177 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~----------~~d~v~~l~~G~i~~~ 244 (268)
T PRK14248 177 RTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQQALR----------VSDRTAFFLNGDLVEY 244 (268)
T ss_pred HHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHHHHHH----------hCCEEEEEECCEEEEe
Confidence 7899999999999997654 47888888854 6899999999999876 9999999999 99999
Q ss_pred cCcceee
Q 023563 223 GKRAFFT 229 (280)
Q Consensus 223 g~~~~~~ 229 (280)
|+++++.
T Consensus 245 ~~~~~~~ 251 (268)
T PRK14248 245 DQTEQIF 251 (268)
T ss_pred CCHHHHH
Confidence 9888776
No 113
>PRK10908 cell division protein FtsE; Provisional
Probab=99.95 E-value=2.6e-28 Score=214.61 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=109.3
Q ss_pred cEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------cccc
Q 023563 52 MVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------DTRY 120 (280)
Q Consensus 52 ~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~~~~ 120 (280)
||+++|++++| +++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+..... ..+.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLL-KLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 58999999999 677899999999999999999999999999999 99999842 222222111100 0112
Q ss_pred ccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563 121 GLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVI 159 (280)
Q Consensus 121 ~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lL 159 (280)
.+.++++...... ..+...++....++. +++++.+|++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVL 159 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 2333333211100 001111222111111 56899999999
Q ss_pred EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563 160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE 220 (280)
Q Consensus 160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~ 220 (280)
|||||++.. .++++|.+++++ |.|+|++|||++++.+ +||++++|++ +++
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~ 216 (222)
T PRK10908 160 LADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDIGLISR----------RSYRMLTLSDGHLH 216 (222)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEc
Confidence 999997654 477888888765 8999999999999986 8999999998 653
No 114
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.95 E-value=9e-29 Score=242.68 Aligned_cols=168 Identities=15% Similarity=0.144 Sum_probs=120.8
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------c-cccc
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------D-TRYG 121 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~-~~~~ 121 (280)
.++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-.... . .+..
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLM-KIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred CceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4589999999999988899999999999999999999999999999 99999842 222222211000 0 0112
Q ss_pred cceeeeeccccc-----------------------ccccccCchHHHHH--------------HhhhhccCCCEEEEeCc
Q 023563 122 LDSIVTHDGVKL-----------------------PCCALTTLSSFRQK--------------FGSDAYDQVDVIGIDEA 164 (280)
Q Consensus 122 ~~~v~~~~~~~~-----------------------~~~~~~~l~~~~~~--------------~a~aL~~~p~lLlLDEP 164 (280)
+++++|...... ..+...++....++ .|++|+.+|++||||||
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEP 167 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEP 167 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 333333211100 00111122111111 16789999999999999
Q ss_pred ccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 165 QFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 165 ~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++.+ .++++|++++++ |+|||++|||++++.+ +||+|++|++ +++..|+++++.
T Consensus 168 t~~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 168 TASLTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQ----------LADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEecChHHcC
Confidence 7654 588889988775 9999999999999986 9999999999 998899988765
No 115
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.3e-28 Score=224.38 Aligned_cols=168 Identities=18% Similarity=0.139 Sum_probs=118.9
Q ss_pred CccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------cccc
Q 023563 50 HSMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRY 120 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~ 120 (280)
.++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-.... ..+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl-~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLA-KLLNGLLLPEAGTITVGGMVLSEETVWDVRR 81 (279)
T ss_pred CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEECCEECCcCcHHHHhh
Confidence 357999999999974 5699999999999999999999999999999 99999732 112221111000 0111
Q ss_pred ccceeeeecc-ccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCE
Q 023563 121 GLDSIVTHDG-VKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDV 158 (280)
Q Consensus 121 ~~~~v~~~~~-~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~l 158 (280)
.++++++... ... ..+...++..+.++. +++|+.+|++
T Consensus 82 ~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l 161 (279)
T PRK13635 82 QVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDI 161 (279)
T ss_pred heEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 2233333210 000 001111222222211 5789999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||||++.+ .++++|++++++.|+|||++|||++++. .||++++|++ ++++.|+++++.
T Consensus 162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-----------QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-----------cCCEEEEEECCEEEEECCHHHHh
Confidence 9999997654 5888999988766999999999999885 6999999999 999999988776
No 116
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.95 E-value=3.3e-28 Score=213.11 Aligned_cols=153 Identities=18% Similarity=0.194 Sum_probs=106.2
Q ss_pred EEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcc----------
Q 023563 53 VSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKD---------- 117 (280)
Q Consensus 53 l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~---------- 117 (280)
|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-.....
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLL-NILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHH-HHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 478999999976 7899999999999999999999999999999 99999842 2222322111000
Q ss_pred cccccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCC
Q 023563 118 TRYGLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQV 156 (280)
Q Consensus 118 ~~~~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p 156 (280)
.+..++++++...... ..+...++....++. +++|+.+|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence 0112333333211100 011111222222111 57899999
Q ss_pred CEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 157 DVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 157 ~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
++||||||++. ..+.++|++++++.|+|||++|||++++. +||++++|++
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-----------~~d~v~~l~~ 215 (218)
T cd03255 160 KIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-----------YADRIIELRD 215 (218)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-----------hhcEEEEeeC
Confidence 99999999754 45888899887745899999999999874 8999999987
No 117
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=2.8e-28 Score=231.26 Aligned_cols=163 Identities=20% Similarity=0.261 Sum_probs=132.4
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCeeEEEecCCcccccc
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRNVAVIKSNKDTRYG 121 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~i~~~~~~~~~~~~ 121 (280)
.+.+++++++|+|++..+++||||+|++|||++|+|.||||||||+ ++|.|+ .++|+.+.+-.|....+.+
T Consensus 2 ~~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm-~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 2 EPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLM-KILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred CceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHH-HHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 3579999999999999999999999999999999999999999999 999997 3477777776666667888
Q ss_pred cceeeeecccccccccccC---------------------chHHHHHH-----------------------hhhhccCCC
Q 023563 122 LDSIVTHDGVKLPCCALTT---------------------LSSFRQKF-----------------------GSDAYDQVD 157 (280)
Q Consensus 122 ~~~v~~~~~~~~~~~~~~~---------------------l~~~~~~~-----------------------a~aL~~~p~ 157 (280)
++.+.||..+.......+| +..+.+++ -++|+.+|+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~ 160 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGAR 160 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCC
Confidence 9999998665433222111 12222222 137999999
Q ss_pred EEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 158 VIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 158 lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
+|||||||+. +++++.+++++++ |+|||++||-++++.+ +|||+.+|.. +++..-+
T Consensus 161 iLILDEPTaVLTP~E~~~lf~~l~~l~~~-G~tIi~ITHKL~Ev~~----------iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 161 LLILDEPTAVLTPQEADELFEILRRLAAE-GKTIIFITHKLKEVMA----------IADRVTVLRRGKVVGTVD 223 (501)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHHHHHH----------hhCeeEEEeCCeEEeeec
Confidence 9999999764 3689999999987 9999999999999987 9999999999 8766544
No 118
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2e-28 Score=218.19 Aligned_cols=166 Identities=17% Similarity=0.175 Sum_probs=116.2
Q ss_pred EEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eEEE
Q 023563 53 VSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NVAV 111 (280)
Q Consensus 53 l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i~~ 111 (280)
|+++|++++|++ +.+|+++||+|++|++++|+||||||||||+ ++|+|+.. +|. .+++
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTM-KMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 468999999988 7899999999999999999999999999999 99999732 222 1233
Q ss_pred ecCCccccc--ccceeee---e-cc--------cccccccccCchH--HHHHH--------------hhhhccCCCEEEE
Q 023563 112 IKSNKDTRY--GLDSIVT---H-DG--------VKLPCCALTTLSS--FRQKF--------------GSDAYDQVDVIGI 161 (280)
Q Consensus 112 ~~~~~~~~~--~~~~v~~---~-~~--------~~~~~~~~~~l~~--~~~~~--------------a~aL~~~p~lLlL 161 (280)
++|...... .+...+. . .. .....+...++.. +.++. |++++.+|++|||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 159 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLM 159 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 333221100 0000000 0 00 0001111223331 22221 6789999999999
Q ss_pred eCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 162 DEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 162 DEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||++.. .+++.|++++++.|+|||++||+++++.+ +||++++|++ +++..|+++++.
T Consensus 160 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 160 DEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFR----------LADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEecCHHHHH
Confidence 9997654 47888888876558999999999998876 9999999999 988888877764
No 119
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.95 E-value=3.4e-28 Score=216.25 Aligned_cols=165 Identities=16% Similarity=0.143 Sum_probs=114.7
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---hCCeeEEEecCCc-------cccccc
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---QKGRNVAVIKSNK-------DTRYGL 122 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~~g~~i~~~~~~~-------~~~~~~ 122 (280)
|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+. .....+.+..... ..+..+
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLS-KTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 4789999999988999999999999999999999999999999 9999973 2222232211100 001112
Q ss_pred ceeeeecccc----------------------------------cccccccCch-HHH-------------HH--Hhhhh
Q 023563 123 DSIVTHDGVK----------------------------------LPCCALTTLS-SFR-------------QK--FGSDA 152 (280)
Q Consensus 123 ~~v~~~~~~~----------------------------------~~~~~~~~l~-~~~-------------~~--~a~aL 152 (280)
.+++|..... ...+...++. .+. .+ .+++|
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 2222211100 0000011111 110 11 16789
Q ss_pred ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccc-cceEEEeec-eeccccC
Q 023563 153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPL-ADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~-aD~i~~L~~-~i~~~g~ 224 (280)
+.+|++||||||++.. .++++|++++++ |.|||++|||++++.+ + ||++++|++ +++..|+
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~vsH~~~~~~~----------~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDIDALKIVAEGINRLREP-DRSFLIITHYQRLLNY----------IKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CcEEEEEEecHHHHHh----------hcCCeEEEEeCCEEEEecC
Confidence 9999999999997654 588888888764 8999999999999976 7 899999999 8888888
Q ss_pred cceee
Q 023563 225 RAFFT 229 (280)
Q Consensus 225 ~~~~~ 229 (280)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 77543
No 120
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.2e-28 Score=219.01 Aligned_cols=167 Identities=12% Similarity=0.107 Sum_probs=119.5
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------- 116 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------- 116 (280)
.++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-....
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFI-RCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 4589999999999988899999999999999999999999999999 99999743 233332211110
Q ss_pred -ccccccceeeeeccccc--------------------------ccccccCc----hHHHHH--------------Hhhh
Q 023563 117 -DTRYGLDSIVTHDGVKL--------------------------PCCALTTL----SSFRQK--------------FGSD 151 (280)
Q Consensus 117 -~~~~~~~~v~~~~~~~~--------------------------~~~~~~~l----~~~~~~--------------~a~a 151 (280)
..+..++++++...... ..+...++ ....++ .+++
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 168 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIART 168 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHH
Confidence 11222334443211100 00111111 011111 1678
Q ss_pred hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
|+.+|++||||||++.. .++++|+++. + |+|||++|||++++.+ +||++++|++ +++..|+
T Consensus 169 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~----------~~d~i~~l~~G~i~~~~~ 236 (258)
T PRK14268 169 LAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQQAAR----------ISDYTGFFLMGELIEFGQ 236 (258)
T ss_pred HHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHH----------hCCEEEEEECCEEEEeCC
Confidence 99999999999997654 4788888885 3 7999999999999876 9999999999 9999999
Q ss_pred cceee
Q 023563 225 RAFFT 229 (280)
Q Consensus 225 ~~~~~ 229 (280)
++++.
T Consensus 237 ~~~~~ 241 (258)
T PRK14268 237 TRQIF 241 (258)
T ss_pred HHHHh
Confidence 88876
No 121
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=6.7e-28 Score=205.51 Aligned_cols=154 Identities=20% Similarity=0.231 Sum_probs=110.9
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC--------cccccccc
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN--------KDTRYGLD 123 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~--------~~~~~~~~ 123 (280)
|+++|++++|+++.+++++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.... ...+..+.
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLL-RCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 4789999999988899999999999999999999999999999 99999743 22333221111 11123344
Q ss_pred eeeeecccccccccccCc----h-HHHHH--HhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEe
Q 023563 124 SIVTHDGVKLPCCALTTL----S-SFRQK--FGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGL 190 (280)
Q Consensus 124 ~v~~~~~~~~~~~~~~~l----~-~~~~~--~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtH 190 (280)
++++............++ + ...++ .+++++.+|++||||||++. ..++++|++++++.|.|+|++||
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred EEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 555443322111111121 1 12222 37899999999999999654 45788888887755799999999
Q ss_pred chhHhhhccCCccccccccceEEEeec
Q 023563 191 DGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 191 dl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
|++++.+ +||++++|++
T Consensus 160 ~~~~~~~----------~~d~i~~l~~ 176 (178)
T cd03229 160 DLDEAAR----------LADRVVVLRD 176 (178)
T ss_pred CHHHHHH----------hcCEEEEEeC
Confidence 9999976 8999999975
No 122
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.95 E-value=2.3e-28 Score=236.68 Aligned_cols=173 Identities=16% Similarity=0.124 Sum_probs=131.7
Q ss_pred CCccEEEcCceEEeCC-----------eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc
Q 023563 49 IHSMVSPRPPLFSLQN-----------RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK 116 (280)
Q Consensus 49 ~~~~l~~~~ls~~y~~-----------~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~ 116 (280)
..|+++++||++.|.. ..+++||||+|.+||++||+|+||||||||. ++|+|+.. .+..+.+...+.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTla-r~i~gL~~P~~G~i~~~g~~~ 355 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLA-RILAGLLPPSSGSIIFDGQDL 355 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEEeCccc
Confidence 5679999999999962 3689999999999999999999999999999 99999843 344555444320
Q ss_pred --------ccccccceeeeecccc-cc-----------------------------cccccCchH-HHHHH---------
Q 023563 117 --------DTRYGLDSIVTHDGVK-LP-----------------------------CCALTTLSS-FRQKF--------- 148 (280)
Q Consensus 117 --------~~~~~~~~v~~~~~~~-~~-----------------------------~~~~~~l~~-~~~~~--------- 148 (280)
..+..+..+||+.... .+ .+...++.. ++.++
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence 1123344555521110 00 011222221 23332
Q ss_pred -----hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 149 -----GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 149 -----a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
|+||+.+|++|++|||++.+ +++++|+++.++.|.|+|+||||++.+.+ +||||++|.+
T Consensus 436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~----------i~drv~vm~~ 505 (539)
T COG1123 436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRY----------IADRVAVMYD 505 (539)
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHh----------hCceEEEEEC
Confidence 68999999999999997765 48999999999999999999999999997 9999999999
Q ss_pred -eeccccCcceeeeee
Q 023563 218 -RCEFCGKRAFFTLRK 232 (280)
Q Consensus 218 -~i~~~g~~~~~~~~~ 232 (280)
+++..|+.++++..+
T Consensus 506 G~iVE~G~~~~v~~~p 521 (539)
T COG1123 506 GRIVEEGPTEKVFENP 521 (539)
T ss_pred CeEEEeCCHHHHhcCC
Confidence 999999888888443
No 123
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.95 E-value=2.2e-28 Score=239.42 Aligned_cols=167 Identities=16% Similarity=0.119 Sum_probs=118.8
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------cccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGL 122 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~ 122 (280)
+||+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+ ++|+|+.. ....+.+..... ..+..+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMM-KVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 589999999999988999999999999999999999999999999 99999732 222222111000 001123
Q ss_pred ceeeeeccccc-------------------------------ccccccCchHHHHHH--------------hhhhccCCC
Q 023563 123 DSIVTHDGVKL-------------------------------PCCALTTLSSFRQKF--------------GSDAYDQVD 157 (280)
Q Consensus 123 ~~v~~~~~~~~-------------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~ 157 (280)
++++|...... ..+...++.+..++. |+||+.+|+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 161 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK 161 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 33333211000 001111111111111 678999999
Q ss_pred EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+||||||++.+ .++++|++++++ |.|||++|||++++.+ +||+|++|++ +++..|+++++.
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvii~sHd~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 162 VIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLKEIFE----------ICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hCCEEEEEeCCEEEEecCcCcCC
Confidence 99999997654 588888998765 9999999999999986 9999999999 988888887663
No 124
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.5e-28 Score=229.42 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=120.1
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----------ccccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----------KDTRY 120 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----------~~~~~ 120 (280)
||++ ||+|+|+++.+ |+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.... ...+.
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLI-NAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 5788 99999988653 89999999999999999999999999 99999842 22222221110 01122
Q ss_pred ccceeeeeccccc---------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563 121 GLDSIVTHDGVKL---------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ 165 (280)
Q Consensus 121 ~~~~v~~~~~~~~---------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~ 165 (280)
.+++++|...... ..+...++..+.++. |++|+.+|++||||||+
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPt 156 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPL 156 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 3444444321110 011112222222221 67899999999999997
Q ss_pred cHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeec
Q 023563 166 FFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKT 233 (280)
Q Consensus 166 ~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~ 233 (280)
+.+ .+++.|+++.++.|+|+|++|||++++.+ +||++++|++ +++..|+++++..++.
T Consensus 157 s~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~----------~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 157 ASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILR----------LADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHH----------hCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 644 58888988887668999999999999976 9999999999 9999999998875443
No 125
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.95 E-value=4.7e-28 Score=216.38 Aligned_cols=165 Identities=12% Similarity=0.100 Sum_probs=119.1
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-C-----CeeEEEecCCc--------c
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-K-----GRNVAVIKSNK--------D 117 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~-----g~~i~~~~~~~--------~ 117 (280)
+|+++||+++|+++.+++|+||+|++||+++|+||||||||||+ ++|+|+.. . ...+.+..... .
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLL-RSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHH-HHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 58899999999988899999999999999999999999999999 99999853 2 33343322110 0
Q ss_pred cccccceeeeeccccc---------------------------ccccccCch----HHHHHH--------------hhhh
Q 023563 118 TRYGLDSIVTHDGVKL---------------------------PCCALTTLS----SFRQKF--------------GSDA 152 (280)
Q Consensus 118 ~~~~~~~v~~~~~~~~---------------------------~~~~~~~l~----~~~~~~--------------a~aL 152 (280)
.+..++++++...... ..+...++. ...++. |++|
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 1222334433211100 001111222 222211 6789
Q ss_pred ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563 153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR 225 (280)
Q Consensus 153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~ 225 (280)
+.+|++||||||++.. .++++|+++++ +.|||++|||++++.+ +||++++|++ +++..|++
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~----------~~d~i~~l~~G~i~~~~~~ 227 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQQAAR----------ISDRTAFFYDGELVEYGPT 227 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHH----------hCCEEEEEECCEEEEeCCH
Confidence 9999999999997654 47888888865 4899999999999876 9999999999 99888888
Q ss_pred ceee
Q 023563 226 AFFT 229 (280)
Q Consensus 226 ~~~~ 229 (280)
+++.
T Consensus 228 ~~~~ 231 (247)
T TIGR00972 228 EQIF 231 (247)
T ss_pred HHHH
Confidence 8775
No 126
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.8e-28 Score=218.54 Aligned_cols=167 Identities=13% Similarity=0.107 Sum_probs=119.0
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------- 116 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------- 116 (280)
.++|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-....
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFI-KTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4589999999999988999999999999999999999999999999 99998742 123332211110
Q ss_pred -ccccccceeeeeccccc---------------------------ccccccCch----HHHHHH--------------hh
Q 023563 117 -DTRYGLDSIVTHDGVKL---------------------------PCCALTTLS----SFRQKF--------------GS 150 (280)
Q Consensus 117 -~~~~~~~~v~~~~~~~~---------------------------~~~~~~~l~----~~~~~~--------------a~ 150 (280)
..+..++++++...... ..+...++. +...+. ++
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lar 168 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIAR 168 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 01122333333211000 000011111 011111 56
Q ss_pred hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
+++.+|++||||||++.. .+++.|.++.+ ++|+|++||+++++.+ +||++++|++ +++..|
T Consensus 169 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~----------~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 169 ALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQQAAR----------VSDQTAFFYMGELVECN 236 (259)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHH----------hCCEEEEEECCEEEEEC
Confidence 899999999999997544 57888888853 7899999999999876 9999999999 999999
Q ss_pred Ccceee
Q 023563 224 KRAFFT 229 (280)
Q Consensus 224 ~~~~~~ 229 (280)
+++++.
T Consensus 237 ~~~~~~ 242 (259)
T PRK14274 237 DTNKMF 242 (259)
T ss_pred CHHHHh
Confidence 998876
No 127
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=6.7e-28 Score=204.61 Aligned_cols=153 Identities=19% Similarity=0.269 Sum_probs=111.8
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cccccccceee
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLDSIV 126 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~~v~ 126 (280)
|+++|++++|+++.+|+++||++++||+++|+||||||||||+ ++|+|+.. ....+.+-... ...+..+.+++
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLI-KIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 4689999999888899999999999999999999999999999 99999842 22333221111 11223445555
Q ss_pred eecccccccccccC--ch-HHHH--HHhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHh
Q 023563 127 THDGVKLPCCALTT--LS-SFRQ--KFGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYL 195 (280)
Q Consensus 127 ~~~~~~~~~~~~~~--l~-~~~~--~~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~ 195 (280)
+............+ ++ ...+ ..+++|+.+|++||||||++. ..++++|++++++ |.|+|++|||.+++
T Consensus 80 q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~~ 158 (173)
T cd03230 80 EEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEA 158 (173)
T ss_pred cCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHH
Confidence 54332221111122 21 1112 237899999999999999654 4588999999876 99999999999998
Q ss_pred hhccCCccccccccceEEEeec
Q 023563 196 RRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 196 ~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
.+ +||++++|++
T Consensus 159 ~~----------~~d~i~~l~~ 170 (173)
T cd03230 159 ER----------LCDRVAILNN 170 (173)
T ss_pred HH----------hCCEEEEEeC
Confidence 76 8999999987
No 128
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.3e-28 Score=217.26 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=118.3
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCc--------
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNK-------- 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~-------- 116 (280)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+... ...+.+-....
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLL-RTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 479999999999988899999999999999999999999999999 999998431 23332211100
Q ss_pred ccccccceeeeeccccc-----------------------------ccccccCch----HHHHHH--------------h
Q 023563 117 DTRYGLDSIVTHDGVKL-----------------------------PCCALTTLS----SFRQKF--------------G 149 (280)
Q Consensus 117 ~~~~~~~~v~~~~~~~~-----------------------------~~~~~~~l~----~~~~~~--------------a 149 (280)
..+..++++++...... ..+...++. ...++. +
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA 161 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence 11122333333211100 000011110 011111 5
Q ss_pred hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
++++.+|++||||||++.. .+++.|+++++ ++|||++|||++++.+ +||++++|++ +++..
T Consensus 162 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~ 229 (253)
T PRK14267 162 RALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAAR----------VSDYVAFLYLGKLIEV 229 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHh----------hCCEEEEEECCEEEEe
Confidence 7899999999999996543 57888888854 6899999999999876 9999999999 99999
Q ss_pred cCcceee
Q 023563 223 GKRAFFT 229 (280)
Q Consensus 223 g~~~~~~ 229 (280)
|+++++.
T Consensus 230 ~~~~~~~ 236 (253)
T PRK14267 230 GPTRKVF 236 (253)
T ss_pred CCHHHHH
Confidence 9988775
No 129
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.3e-28 Score=217.50 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=119.8
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCc--------
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNK-------- 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~-------- 116 (280)
++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+... ...+.+.....
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFL-RTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred ceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHH-HHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 489999999999988899999999999999999999999999999 999998542 23333221110
Q ss_pred ccccccceeeeecccc---------cc------------------cccccCc----hHHHHHH--------------hhh
Q 023563 117 DTRYGLDSIVTHDGVK---------LP------------------CCALTTL----SSFRQKF--------------GSD 151 (280)
Q Consensus 117 ~~~~~~~~v~~~~~~~---------~~------------------~~~~~~l----~~~~~~~--------------a~a 151 (280)
..+..+++++|..... +. .+...++ .+..++. |++
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lara 164 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIART 164 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 1122344444421110 00 0000011 0111111 678
Q ss_pred hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
|+.+|++||||||++.. .++++|++++ + +.|||++||+++++.+ +||++++|++ +++..|+
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~ 232 (254)
T PRK14273 165 LAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGR----------ISDRTAFFLNGCIEEESS 232 (254)
T ss_pred HHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCC
Confidence 99999999999997654 4788888885 3 7999999999999876 9999999999 9999999
Q ss_pred cceee
Q 023563 225 RAFFT 229 (280)
Q Consensus 225 ~~~~~ 229 (280)
++++.
T Consensus 233 ~~~~~ 237 (254)
T PRK14273 233 TDELF 237 (254)
T ss_pred HHHHH
Confidence 88876
No 130
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.95 E-value=2.9e-28 Score=218.36 Aligned_cols=168 Identities=16% Similarity=0.071 Sum_probs=119.5
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----c-----c--
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----K-----D-- 117 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~-----~-- 117 (280)
++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-... . .
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLL-GCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 479999999999888899999999999999999999999999999 99999832 22222221111 0 0
Q ss_pred ---cccccceeeeeccc-cc-----------------------------ccccccCch-HHHHHH--------------h
Q 023563 118 ---TRYGLDSIVTHDGV-KL-----------------------------PCCALTTLS-SFRQKF--------------G 149 (280)
Q Consensus 118 ---~~~~~~~v~~~~~~-~~-----------------------------~~~~~~~l~-~~~~~~--------------a 149 (280)
.+..++++++.... .. ..+...++. ...++. |
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 01123333332110 00 000111121 111111 6
Q ss_pred hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
++|+.+|++||||||++.+ .++++|+++.++.|.|||++||+++++.+ +||++++|++ +++..
T Consensus 161 ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~----------~~d~~~~l~~G~i~~~ 230 (253)
T TIGR02323 161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARL----------LAQRLLVMQQGRVVES 230 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hcCEEEEEECCEEEEE
Confidence 7899999999999997654 47888888876558999999999999976 8999999999 99888
Q ss_pred cCcceee
Q 023563 223 GKRAFFT 229 (280)
Q Consensus 223 g~~~~~~ 229 (280)
|+++++.
T Consensus 231 ~~~~~~~ 237 (253)
T TIGR02323 231 GLTDQVL 237 (253)
T ss_pred CCHHHHh
Confidence 8887775
No 131
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.95 E-value=7.2e-28 Score=215.79 Aligned_cols=166 Identities=16% Similarity=0.129 Sum_probs=118.0
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------------
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--------------- 116 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--------------- 116 (280)
|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTIL-RILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 4789999999988999999999999999999999999999999 99999732 222222111000
Q ss_pred ----ccccccceeeeecccccc----------------------------cccccCchHHHHHH--------------hh
Q 023563 117 ----DTRYGLDSIVTHDGVKLP----------------------------CCALTTLSSFRQKF--------------GS 150 (280)
Q Consensus 117 ----~~~~~~~~v~~~~~~~~~----------------------------~~~~~~l~~~~~~~--------------a~ 150 (280)
..+..++++++....... .+...++..+.++. ++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 112233334432111100 01111222211111 56
Q ss_pred hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
+|+.+|++||||||++.+ .+++.|++++++.|.|+|++|||++++.+ +||++++|++ +++..|
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~----------~~d~i~~l~~G~i~~~g 229 (252)
T TIGR03005 160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFARE----------FADRVCFFDKGRIVEQG 229 (252)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH----------hcCEEEEEECCEEEEeC
Confidence 899999999999996544 57888888876558999999999999875 8999999999 998888
Q ss_pred Ccceee
Q 023563 224 KRAFFT 229 (280)
Q Consensus 224 ~~~~~~ 229 (280)
+++++.
T Consensus 230 ~~~~~~ 235 (252)
T TIGR03005 230 KPDEIF 235 (252)
T ss_pred CHHHHh
Confidence 887775
No 132
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.4e-28 Score=221.08 Aligned_cols=168 Identities=17% Similarity=0.146 Sum_probs=120.6
Q ss_pred CccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-C---eeEEEecCCc------c
Q 023563 50 HSMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-G---RNVAVIKSNK------D 117 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g---~~i~~~~~~~------~ 117 (280)
+++|+++|++++|++ +.+++++||+|++||+++|+||||||||||+ ++|+|+... . ..+.+-.... .
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl-~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTIS-KLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHH-HHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 458999999999964 5699999999999999999999999999999 999998532 1 2333221111 0
Q ss_pred cccccceeeeecc-cccc---------------------------cccccCchHHHHHH--------------hhhhccC
Q 023563 118 TRYGLDSIVTHDG-VKLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQ 155 (280)
Q Consensus 118 ~~~~~~~v~~~~~-~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~ 155 (280)
.+..++++++... .... .+...++..+.++. ++||+.+
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~ 161 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVE 161 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 1122334443211 0000 01111222222111 5689999
Q ss_pred CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
|++||||||++.+ .++++|++++++.|+|||++||+++++. +||++++|++ ++++.|+++++
T Consensus 162 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-----------MADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-----------hCCEEEEEECCEEEEeCCHHHH
Confidence 9999999996654 5788888887655999999999999884 7999999999 99999999887
Q ss_pred e
Q 023563 229 T 229 (280)
Q Consensus 229 ~ 229 (280)
.
T Consensus 231 ~ 231 (282)
T PRK13640 231 F 231 (282)
T ss_pred h
Confidence 6
No 133
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=3.4e-28 Score=211.37 Aligned_cols=154 Identities=21% Similarity=0.241 Sum_probs=106.6
Q ss_pred EEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe---------eEEEecCC
Q 023563 54 SPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR---------NVAVIKSN 115 (280)
Q Consensus 54 ~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~---------~i~~~~~~ 115 (280)
+++|++++|++ +.+|+++||+|++|++++|+||||||||||+ ++|+|+.. +|. .+++++|.
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLA-KILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 36899999987 8899999999999999999999999999999 99999732 222 23444443
Q ss_pred ccc---ccccceeee---e-cc----cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH---
Q 023563 116 KDT---RYGLDSIVT---H-DG----VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF--- 167 (280)
Q Consensus 116 ~~~---~~~~~~v~~---~-~~----~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~--- 167 (280)
... ...+...+. . .. .....+...++.++.++. +++|+.+|++||||||++.
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 159 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence 210 000000000 0 00 000111111222211111 6789999999999999654
Q ss_pred ---HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee
Q 023563 168 ---EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC 219 (280)
Q Consensus 168 ---~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i 219 (280)
..++++|++++++ |.|||++|||++++.+ +||++++|++ ++
T Consensus 160 ~~~~~l~~~l~~~~~~-~~tii~~sH~~~~~~~----------~~d~i~~l~~G~i 204 (205)
T cd03226 160 KNMERVGELIRELAAQ-GKAVIVITHDYEFLAK----------VCDRVLLLANGAI 204 (205)
T ss_pred HHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEE
Confidence 4588888888765 9999999999999876 8999999988 65
No 134
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6e-28 Score=216.06 Aligned_cols=166 Identities=13% Similarity=0.061 Sum_probs=117.6
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---h---CCeeEEEecCCc--------
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---Q---KGRNVAVIKSNK-------- 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~---~g~~i~~~~~~~-------- 116 (280)
++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+. . ....+.+.....
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLL-RSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 479999999999988899999999999999999999999999999 9999872 2 122332221110
Q ss_pred ccccccceeeeeccccc---------c------------------cccccCc----hHHHHHH--------------hhh
Q 023563 117 DTRYGLDSIVTHDGVKL---------P------------------CCALTTL----SSFRQKF--------------GSD 151 (280)
Q Consensus 117 ~~~~~~~~v~~~~~~~~---------~------------------~~~~~~l----~~~~~~~--------------a~a 151 (280)
..+..+++++|...... . .+...++ .+..++. |++
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARV 162 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 01122333333211100 0 0000111 0111111 568
Q ss_pred hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
++.+|++||||||++.. .++++|+++.+ +.|||++|||++++.+ +||++++|++ +++..|+
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~ 230 (252)
T PRK14239 163 LATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASR----------ISDRTGFFLDGDLIEYND 230 (252)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHHHHHH----------hCCEEEEEECCEEEEeCC
Confidence 99999999999997654 47888888854 6899999999998876 9999999999 9999999
Q ss_pred cceee
Q 023563 225 RAFFT 229 (280)
Q Consensus 225 ~~~~~ 229 (280)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14239 231 TKQMF 235 (252)
T ss_pred HHHHH
Confidence 88876
No 135
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.3e-28 Score=237.57 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=121.5
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---CeeEEEecCCc-------cccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---GRNVAVIKSNK-------DTRY 120 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---g~~i~~~~~~~-------~~~~ 120 (280)
+||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+... ...+.+..... ..+.
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLM-KVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 589999999999988999999999999999999999999999999 999998542 33333221110 0112
Q ss_pred ccceeeeecccccc------------------------------cccccCchHHHHH--------------HhhhhccCC
Q 023563 121 GLDSIVTHDGVKLP------------------------------CCALTTLSSFRQK--------------FGSDAYDQV 156 (280)
Q Consensus 121 ~~~~v~~~~~~~~~------------------------------~~~~~~l~~~~~~--------------~a~aL~~~p 156 (280)
.+++++|....... .+...++....++ .|++|+.+|
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 162 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 34444443211000 0000111111110 057899999
Q ss_pred CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++||||||++.+ .++++|.+++++ |.|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvi~~tH~~~~~~~----------~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 163 RLLILDEPTASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKA----------ISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHH----------hcCEEEEEECCEEeeecccccCC
Confidence 999999997654 588899998765 9999999999999986 9999999999 999999887764
No 136
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.3e-28 Score=221.46 Aligned_cols=165 Identities=21% Similarity=0.171 Sum_probs=117.0
Q ss_pred EEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------c----ccccc
Q 023563 54 SPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------D----TRYGL 122 (280)
Q Consensus 54 ~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~----~~~~~ 122 (280)
.++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-.... . .+..+
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLL-RCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 678999999999999999999999999999999999999999 99999842 222222111000 0 01123
Q ss_pred ceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563 123 DSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGI 161 (280)
Q Consensus 123 ~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlL 161 (280)
+++++...... ..+...++..+.++. |++|+.+|++|||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 33333211100 001111222222111 6789999999999
Q ss_pred eCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 162 DEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 162 DEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||++.. .++++|.+++++.|+|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~----------~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALR----------LGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hcCEEEEEECCEEEEeCCHHHHH
Confidence 9997654 57888888876558999999999999876 9999999999 888888888775
No 137
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.9e-28 Score=221.41 Aligned_cols=168 Identities=13% Similarity=0.104 Sum_probs=117.9
Q ss_pred ccEEEcCceEEeCCe-----eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----------
Q 023563 51 SMVSPRPPLFSLQNR-----NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS---------- 114 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~-----~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~---------- 114 (280)
..|+++|++++|+++ .+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-..
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMI-QLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEEccccccccc
Confidence 368999999999764 499999999999999999999999999999 99999732 1122211100
Q ss_pred -Ccccccccceeeeecc-ccc---------------------------ccccccCc-hHHHHHH--------------hh
Q 023563 115 -NKDTRYGLDSIVTHDG-VKL---------------------------PCCALTTL-SSFRQKF--------------GS 150 (280)
Q Consensus 115 -~~~~~~~~~~v~~~~~-~~~---------------------------~~~~~~~l-~~~~~~~--------------a~ 150 (280)
....+..++++++... ..+ ..+...++ ..+.++. |+
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 0011122333333210 000 00111122 1121111 57
Q ss_pred hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
||+.+|++||||||++.. .++++|+++.++.|+|||++|||++++.+ +||++++|++ +++..|
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~----------~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLR----------IADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEeC
Confidence 899999999999997654 47888888876558999999999999876 9999999999 998899
Q ss_pred Ccceee
Q 023563 224 KRAFFT 229 (280)
Q Consensus 224 ~~~~~~ 229 (280)
+++++.
T Consensus 234 ~~~~~~ 239 (289)
T PRK13645 234 SPFEIF 239 (289)
T ss_pred CHHHHh
Confidence 988775
No 138
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.95 E-value=3.4e-28 Score=218.47 Aligned_cols=165 Identities=23% Similarity=0.263 Sum_probs=116.8
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eEEEe
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NVAVI 112 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i~~~ 112 (280)
|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. +|. .++|+
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLL-RLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 6899999999999999999999999999999999999999999 99999732 222 23344
Q ss_pred cCCccccc--ccceeeeec-----c-----------cccccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563 113 KSNKDTRY--GLDSIVTHD-----G-----------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 113 ~~~~~~~~--~~~~v~~~~-----~-----------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl 160 (280)
+|...... .+...+... . .....+...++.++.++. +++++.+|++||
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL 160 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 44321100 000000000 0 000001111222211111 568999999999
Q ss_pred EeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 161 IDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 161 LDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||++. ..+.++|++++++ |.|||++|||++++.+ +||+|++|++ ++++.|+++++.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 161 LDEPTNHLDVRAQLETLALVRELAAT-GVTVVAALHDLNLAAS----------YCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH----------hCCEEEEEeCCCEEEecCHHHhh
Confidence 9999664 3578888888765 8999999999999976 9999999999 999899888765
No 139
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.95 E-value=5.1e-28 Score=227.76 Aligned_cols=162 Identities=19% Similarity=0.196 Sum_probs=117.3
Q ss_pred EEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcc---cccccceeeee
Q 023563 60 FSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKD---TRYGLDSIVTH 128 (280)
Q Consensus 60 ~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~---~~~~~~~v~~~ 128 (280)
|.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. +|.++....+... .+..+++++|+
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLL-r~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTV-RMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHH-HHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 468888999999999999999999999999999999 99999842 2322221111000 02344455543
Q ss_pred cccccc---------------------------cccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH
Q 023563 129 DGVKLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF 167 (280)
Q Consensus 129 ~~~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~ 167 (280)
...+.. .+...++..+.+++ |+||+.+|++||||||++.
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 222111 11222333322222 6789999999999999654
Q ss_pred ------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563 168 ------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK 232 (280)
Q Consensus 168 ------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~ 232 (280)
..+.+.+.++.++.|+|||++|||++++.+ +||+|++|++ +++..|+++++..+.
T Consensus 160 LD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~----------~~drI~vl~~G~iv~~g~~~ei~~~p 221 (363)
T TIGR01186 160 LDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIR----------IGDRIVIMKAGEIVQVGTPDEILRNP 221 (363)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEeCCEEEeeCCHHHHHhCc
Confidence 458888888877669999999999999976 9999999999 999999999887443
No 140
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.3e-28 Score=220.63 Aligned_cols=166 Identities=16% Similarity=0.137 Sum_probs=116.4
Q ss_pred cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----------
Q 023563 52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN---------- 115 (280)
Q Consensus 52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~---------- 115 (280)
.|+++||+++|++ +.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIM-QLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccccccCH
Confidence 4899999999974 3699999999999999999999999999999 99999732 11112111100
Q ss_pred cccccccceeeeecc-ccc---------------------------ccccccCch-HHHHHH--------------hhhh
Q 023563 116 KDTRYGLDSIVTHDG-VKL---------------------------PCCALTTLS-SFRQKF--------------GSDA 152 (280)
Q Consensus 116 ~~~~~~~~~v~~~~~-~~~---------------------------~~~~~~~l~-~~~~~~--------------a~aL 152 (280)
...+..++++++... ..+ ..+...++. .+.++. |++|
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 001112223332210 000 001112232 111111 6789
Q ss_pred ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563 153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR 225 (280)
Q Consensus 153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~ 225 (280)
+.+|++||||||++.+ .+++.|++++++ |+|||++|||++++.+ +||++++|++ +++..|++
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~----------~~d~i~~l~~G~i~~~g~~ 229 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMDDVAN----------YADFVYVLEKGKLVLSGKP 229 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHHHHHH----------hCCEEEEEECCEEEEeCCH
Confidence 9999999999997654 478888888765 9999999999999976 9999999999 98889998
Q ss_pred ceee
Q 023563 226 AFFT 229 (280)
Q Consensus 226 ~~~~ 229 (280)
+++.
T Consensus 230 ~~~~ 233 (280)
T PRK13649 230 KDIF 233 (280)
T ss_pred HHHh
Confidence 8876
No 141
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.95 E-value=8.6e-28 Score=205.53 Aligned_cols=151 Identities=19% Similarity=0.163 Sum_probs=109.1
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-------ccccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-------KDTRYGL 122 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-------~~~~~~~ 122 (280)
++|+++|++++| +++++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.... ...+..+
T Consensus 3 ~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELA-EALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred cEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 479999999999 89999999999999999999999999999 99999843 23333222111 1112334
Q ss_pred ceeeeecc--ccccccc-ccCchH-------HHHH--HhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCE
Q 023563 123 DSIVTHDG--VKLPCCA-LTTLSS-------FRQK--FGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKT 184 (280)
Q Consensus 123 ~~v~~~~~--~~~~~~~-~~~l~~-------~~~~--~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~t 184 (280)
.+++++.. ...+... ..++.. ..++ .|++++.+|++||||||++. ..+++.++++.++ |.|
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~t 156 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKA 156 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHC-CCE
Confidence 55554421 1222111 112211 1122 37899999999999999654 4588888888765 899
Q ss_pred EEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 185 VIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 185 viivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
+|++||+++++.+ +||++++|++
T Consensus 157 iii~sh~~~~~~~----------~~d~v~~l~~ 179 (182)
T cd03215 157 VLLISSELDELLG----------LCDRILVMYE 179 (182)
T ss_pred EEEEeCCHHHHHH----------hCCEEEEecC
Confidence 9999999999986 9999999987
No 142
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=7.3e-28 Score=218.04 Aligned_cols=168 Identities=17% Similarity=0.107 Sum_probs=118.7
Q ss_pred CccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------cccc
Q 023563 50 HSMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRY 120 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~ 120 (280)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+..... ..+.
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIA-KLMIGIEKVKSGEIFYNNQAITDDNFEKLRK 83 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence 458999999999975 4599999999999999999999999999999 99999842 222232211110 0112
Q ss_pred ccceeeeecc-ccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCE
Q 023563 121 GLDSIVTHDG-VKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDV 158 (280)
Q Consensus 121 ~~~~v~~~~~-~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~l 158 (280)
.++++++... ... ..+...++..+.++. ++|++.+|++
T Consensus 84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (269)
T PRK13648 84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV 163 (269)
T ss_pred heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 2333333211 000 001111111111111 5789999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||||++.. .+++.|++++++.|.|||++||+++++. .||++++|++ +++..|+++++.
T Consensus 164 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 164 IILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAM-----------EADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHh-----------cCCEEEEEECCEEEEecCHHHHh
Confidence 9999997654 4788888887655899999999999885 5999999999 999999988876
No 143
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.95 E-value=6.9e-28 Score=211.50 Aligned_cols=157 Identities=17% Similarity=0.092 Sum_probs=107.0
Q ss_pred cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------c---
Q 023563 52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------D--- 117 (280)
Q Consensus 52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~--- 117 (280)
+|+++|++++|++ +.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-.... .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLL-HLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 4789999999964 5799999999999999999999999999999 99999732 122221111000 0
Q ss_pred cc-cccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccC
Q 023563 118 TR-YGLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQ 155 (280)
Q Consensus 118 ~~-~~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~ 155 (280)
.+ ..++++++...... ..+...++....++. +++++.+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 159 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQ 159 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 00 12333333211100 001111222211111 5689999
Q ss_pred CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563 156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE 220 (280)
Q Consensus 156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~ 220 (280)
|++||||||++.+ .+++.|++++++.|.|||++|||++++. .||++++|++ +++
T Consensus 160 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~-----------~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 160 PSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAK-----------KLDRVLEMKDGQLF 220 (221)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-----------hcCEEEEEeCCEec
Confidence 9999999997654 4788888887655899999999999885 5799999998 653
No 144
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.95 E-value=8.2e-28 Score=217.76 Aligned_cols=168 Identities=14% Similarity=0.062 Sum_probs=118.5
Q ss_pred ccEEEcCceEEeC---------CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc----
Q 023563 51 SMVSPRPPLFSLQ---------NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---- 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~---------~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---- 116 (280)
++|+++||++.|+ ++.+++|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.....
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLA-RLLVGLESPSQGNVSWRGEPLAKLN 80 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEeccccC
Confidence 3799999999997 47899999999999999999999999999999 99999732 222222111100
Q ss_pred -----ccccccceeeeeccc-cc-----------------------------ccccccCch-HHHHHH------------
Q 023563 117 -----DTRYGLDSIVTHDGV-KL-----------------------------PCCALTTLS-SFRQKF------------ 148 (280)
Q Consensus 117 -----~~~~~~~~v~~~~~~-~~-----------------------------~~~~~~~l~-~~~~~~------------ 148 (280)
..+..++++++.... +. ..+...++. .+.++.
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl 160 (268)
T PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV 160 (268)
T ss_pred hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH
Confidence 011123333332100 00 001111111 111111
Q ss_pred --hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee
Q 023563 149 --GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC 219 (280)
Q Consensus 149 --a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i 219 (280)
+++|+.+|++||||||++.+ .+++.|++++++.|.|+|++||+++++.+ +||++++|++ ++
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~----------~~d~i~~l~~G~i 230 (268)
T PRK10419 161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVER----------FCQRVMVMDNGQI 230 (268)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHH----------hCCEEEEEECCEE
Confidence 57899999999999997654 47888888877568999999999999976 9999999999 99
Q ss_pred ccccCcceee
Q 023563 220 EFCGKRAFFT 229 (280)
Q Consensus 220 ~~~g~~~~~~ 229 (280)
+..|+++++.
T Consensus 231 ~~~g~~~~~~ 240 (268)
T PRK10419 231 VETQPVGDKL 240 (268)
T ss_pred eeeCChhhcc
Confidence 9999888765
No 145
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=9.2e-28 Score=214.85 Aligned_cols=166 Identities=12% Similarity=0.053 Sum_probs=117.6
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---h---CCeeEEEecCCc--------
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---Q---KGRNVAVIKSNK-------- 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~---~g~~i~~~~~~~-------- 116 (280)
++|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+. . ....+.+.....
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFL-RLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHH-HHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 589999999999988899999999999999999999999999999 9998852 1 122222211100
Q ss_pred ccccccceeeeecccc---------------------------cccccccCch----HHHHHH--------------hhh
Q 023563 117 DTRYGLDSIVTHDGVK---------------------------LPCCALTTLS----SFRQKF--------------GSD 151 (280)
Q Consensus 117 ~~~~~~~~v~~~~~~~---------------------------~~~~~~~~l~----~~~~~~--------------a~a 151 (280)
..+..++++++..... ...+...++. ....+. +++
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA 160 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence 0111233333221100 0001111111 111111 578
Q ss_pred hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
|+.+|++||||||++.. .+++.|+++. + ++|||++|||++++.+ +||++++|++ +++..|+
T Consensus 161 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~----------~~d~v~~l~~G~~~~~~~ 228 (250)
T PRK14245 161 MAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQQAAR----------VSDKTAFFYMGEMVEYDD 228 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHh----------hCCEEEEEECCEEEEECC
Confidence 99999999999997654 5788888884 4 7999999999999876 9999999999 9999999
Q ss_pred cceee
Q 023563 225 RAFFT 229 (280)
Q Consensus 225 ~~~~~ 229 (280)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14245 229 TKKIF 233 (250)
T ss_pred HHHHh
Confidence 99886
No 146
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.95 E-value=8.3e-28 Score=218.09 Aligned_cols=166 Identities=19% Similarity=0.239 Sum_probs=118.1
Q ss_pred cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe---------eEEEec
Q 023563 52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR---------NVAVIK 113 (280)
Q Consensus 52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~---------~i~~~~ 113 (280)
+|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. +|. .++|++
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~ 84 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLF-KALMGFVRLASGKISILGQPTRQALQKNLVAYVP 84 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEhHHhhccceEEEec
Confidence 699999999995 57899999999999999999999999999999 99999832 221 355665
Q ss_pred CCcccc--c--ccceeee---ec--c-----------cccccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563 114 SNKDTR--Y--GLDSIVT---HD--G-----------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVI 159 (280)
Q Consensus 114 ~~~~~~--~--~~~~v~~---~~--~-----------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lL 159 (280)
|..... . .+...+. .. . .....+...++....++. +++|+.+|++|
T Consensus 85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 543210 0 0000000 00 0 000011112222222211 67899999999
Q ss_pred EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceee
Q 023563 160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFT 229 (280)
Q Consensus 160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~ 229 (280)
|||||++.+ .+.++|++++++ |+|||++|||++++.+ +||++++++.+++..|+++++.
T Consensus 165 llDEPt~~LD~~~~~~l~~~L~~~~~~-g~tviivsH~~~~~~~----------~~d~v~~~~G~i~~~g~~~~~~ 229 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTE----------FCDYTVMVKGTVLASGPTETTF 229 (272)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEECCEEEeecCHHhcc
Confidence 999997654 588888888765 9999999999999876 9999988833888899988875
No 147
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.95 E-value=4.6e-28 Score=211.46 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=106.4
Q ss_pred EEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------ccccc
Q 023563 53 VSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------DTRYG 121 (280)
Q Consensus 53 l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~~~~~ 121 (280)
|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-.... ..+..
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLL-KLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 478999999964 6899999999999999999999999999999 99999832 222232211100 01122
Q ss_pred cceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563 122 LDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 122 ~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl 160 (280)
+.++++...... ..+...++....++. +++++.+|++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI 159 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence 333333211100 001111222222111 578999999999
Q ss_pred EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
||||++.. .+.+.|+++.++ |.|||++||+++++.+ +||++++|++
T Consensus 160 lDEPt~~LD~~~~~~~~~~l~~~~~~-~~tiiivtH~~~~~~~----------~~d~i~~l~~ 211 (214)
T cd03292 160 ADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDT----------TRHRVIALER 211 (214)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHH----------hCCEEEEEeC
Confidence 99997654 478888888765 9999999999999986 8999999986
No 148
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=4.9e-28 Score=211.17 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=108.1
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-----ccccccceee
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-----DTRYGLDSIV 126 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-----~~~~~~~~v~ 126 (280)
|+++|++++|+++.+++|+||+|++| +++|+||||||||||+ ++|+|+.. ....+.+..... ..+..+.+++
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLM-RILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHH-HHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 47899999999889999999999999 9999999999999999 99999732 222222111100 0011122222
Q ss_pred eecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563 127 THDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ 165 (280)
Q Consensus 127 ~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~ 165 (280)
+..... ...+...++..+.++. |++++.+|++||||||+
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 158 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 211100 0011112232222211 67899999999999997
Q ss_pred cHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 166 FFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 166 ~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
+.. .++++|+++++ +.|||++|||++++.+ +||++++|++ ++++.|
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~----------~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 159 AGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVES----------LCNQVAVLNKGKLVFEG 211 (211)
T ss_pred ccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHH----------hCCEEEEEECCEEEecC
Confidence 654 47788888865 5899999999999876 8999999999 776543
No 149
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=8.5e-28 Score=214.96 Aligned_cols=166 Identities=15% Similarity=0.077 Sum_probs=117.6
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc------cc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------DT 118 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------~~ 118 (280)
++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+..... ..
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 2 NKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLL-RVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred ceEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 369999999999988899999999999999999999999999999 99999853 123332211100 01
Q ss_pred ccccceeeeeccccc-----------------------------ccccccCch----HHHHH--------------Hhhh
Q 023563 119 RYGLDSIVTHDGVKL-----------------------------PCCALTTLS----SFRQK--------------FGSD 151 (280)
Q Consensus 119 ~~~~~~v~~~~~~~~-----------------------------~~~~~~~l~----~~~~~--------------~a~a 151 (280)
+..+++++|...... ..+...++. ...++ .|++
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 160 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence 122333333211000 000111111 01111 1678
Q ss_pred hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
|+.+|++||||||++.. .+++.|+++. + |.|+|++|||++++.+ +||++++|++ ++++.|+
T Consensus 161 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14247 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAAR----------ISDYVAFLYKGQIVEWGP 228 (250)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHH----------hcCEEEEEECCeEEEECC
Confidence 99999999999996654 5788888875 3 8999999999999876 8999999999 9988899
Q ss_pred cceee
Q 023563 225 RAFFT 229 (280)
Q Consensus 225 ~~~~~ 229 (280)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14247 229 TREVF 233 (250)
T ss_pred HHHHH
Confidence 88775
No 150
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.95 E-value=6.3e-28 Score=216.64 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=117.9
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-----CeeEEEecCCc----cccccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-----GRNVAVIKSNK----DTRYGL 122 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-----g~~i~~~~~~~----~~~~~~ 122 (280)
+|+++|++++| ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+... ...+.+..... ..+..+
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTC-AAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence 69999999999 56799999999999999999999999999999 999998432 22222211100 001122
Q ss_pred ceeeeeccc-cc--------------------------ccccccCchH---HHHHH--------------hhhhccCCCE
Q 023563 123 DSIVTHDGV-KL--------------------------PCCALTTLSS---FRQKF--------------GSDAYDQVDV 158 (280)
Q Consensus 123 ~~v~~~~~~-~~--------------------------~~~~~~~l~~---~~~~~--------------a~aL~~~p~l 158 (280)
+++++.... .. ..+...++.. +.++. +++|+.+|++
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 161 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPF 161 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 333332110 00 0011112221 11111 6789999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||||++.. .+++.|++++++.|.|||++||+++++.+ +||++++|++ +++..|+++++.
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~----------~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 162 IIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVAR----------LADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHH----------hCCEEEEEECCEEEEecCHHHHh
Confidence 9999997654 47888888876558999999999999876 9999999999 999999988876
No 151
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=214.25 Aligned_cols=166 Identities=15% Similarity=0.085 Sum_probs=117.6
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK-------- 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~-------- 116 (280)
++|+++|++++|+++.+++|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-....
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 2 PIIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLL-RSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred ceEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHH-HHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 379999999999988999999999999999999999999999999 99999743 223332211100
Q ss_pred ccccccceeeeeccccc---------c------------------cccccCch----HHHHHH--------------hhh
Q 023563 117 DTRYGLDSIVTHDGVKL---------P------------------CCALTTLS----SFRQKF--------------GSD 151 (280)
Q Consensus 117 ~~~~~~~~v~~~~~~~~---------~------------------~~~~~~l~----~~~~~~--------------a~a 151 (280)
..+..++++++...... . .+...++. ...++. +++
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~a 160 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARA 160 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHH
Confidence 11222333333211000 0 00001111 011111 678
Q ss_pred hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
++.+|++||||||++.. .+++.|.++.+ ++|+|++||+++.+.+ +||++++|++ +++..|+
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 161 LAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIGQAIR----------IADYIAFMYRGELIEYGP 228 (250)
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEecC
Confidence 99999999999997654 47788888753 7899999999998876 9999999999 9998998
Q ss_pred cceee
Q 023563 225 RAFFT 229 (280)
Q Consensus 225 ~~~~~ 229 (280)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14262 229 TREIV 233 (250)
T ss_pred HHHHH
Confidence 88775
No 152
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.95 E-value=1e-27 Score=204.67 Aligned_cols=150 Identities=22% Similarity=0.252 Sum_probs=109.0
Q ss_pred EEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------ccccccceee
Q 023563 54 SPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRYGLDSIV 126 (280)
Q Consensus 54 ~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~~~~~v~ 126 (280)
+++|++++|+++.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-..+. ..+..+++++
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl-~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLL-KTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 478999999888899999999999999999999999999999 99999843 333343221111 0111233333
Q ss_pred eecccccccccccCchHHH------------HH--HhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEE
Q 023563 127 THDGVKLPCCALTTLSSFR------------QK--FGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVI 186 (280)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~------------~~--~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tvi 186 (280)
+ .+...++.++. .+ .+++++.+|++||||||+.. ..+.+.|.+++++.|.|+|
T Consensus 80 q-------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tii 152 (180)
T cd03214 80 Q-------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV 152 (180)
T ss_pred H-------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 2 11112222111 11 26899999999999999654 4578888888765489999
Q ss_pred EEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563 187 VAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF 221 (280)
Q Consensus 187 ivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~ 221 (280)
++||+++++.+ +||++++|++ +++.
T Consensus 153 i~sh~~~~~~~----------~~d~~~~l~~g~i~~ 178 (180)
T cd03214 153 MVLHDLNLAAR----------YADRVILLKDGRIVA 178 (180)
T ss_pred EEeCCHHHHHH----------hCCEEEEEECCEEEe
Confidence 99999999876 9999999998 7654
No 153
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.4e-27 Score=211.61 Aligned_cols=162 Identities=16% Similarity=0.113 Sum_probs=110.3
Q ss_pred ccEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcc--------
Q 023563 51 SMVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKD-------- 117 (280)
Q Consensus 51 ~~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~-------- 117 (280)
|+|+++||+++|++ +.+|+++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+......
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLL-HLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 47999999999964 5799999999999999999999999999999 99999832 1222221110000
Q ss_pred -c-ccccceeeeecccc---------------------------cccccccCchHHHHHH--------------hhhhcc
Q 023563 118 -T-RYGLDSIVTHDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYD 154 (280)
Q Consensus 118 -~-~~~~~~v~~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~ 154 (280)
. +..+++++|..... ...+...++.++.++. +++++.
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~ 162 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVN 162 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 0 01233333321100 0001111222211111 568999
Q ss_pred CCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 155 QVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 155 ~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
+|++||||||++. ..++++|++++++.|+|||++|||++++.. +|++++|++ ++++.++
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-----------~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 163 NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-----------MSRQLEMRDGRLTAELS 228 (233)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-----------hCEEEEEECCEEEEEec
Confidence 9999999999654 457888888876458999999999999874 579999998 8776544
No 154
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=215.30 Aligned_cols=165 Identities=13% Similarity=0.079 Sum_probs=117.6
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------c
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK--------D 117 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~--------~ 117 (280)
+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....|.+..... .
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVL-RTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 79999999999988999999999999999999999999999999 99999853 233443322110 0
Q ss_pred cccccceeeeeccccc----------------------------ccccccCch----HHHHHH--------------hhh
Q 023563 118 TRYGLDSIVTHDGVKL----------------------------PCCALTTLS----SFRQKF--------------GSD 151 (280)
Q Consensus 118 ~~~~~~~v~~~~~~~~----------------------------~~~~~~~l~----~~~~~~--------------a~a 151 (280)
.+..++++++...... ..+...++. ...++. +++
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARA 162 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 1122333333211000 000011111 111111 678
Q ss_pred hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee------c-e
Q 023563 152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT------A-R 218 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~------~-~ 218 (280)
++.+|++||||||++.. .++++|+++++ ++|||++||+++++.+ +||++++|+ + +
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~~~~~~----------~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 163 IAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNMQQAAR----------VSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHH----------hCCEEEEEecccCCCCce
Confidence 99999999999997654 47888888853 6899999999999876 999999996 6 8
Q ss_pred eccccCcceee
Q 023563 219 CEFCGKRAFFT 229 (280)
Q Consensus 219 i~~~g~~~~~~ 229 (280)
+++.|+++++.
T Consensus 231 i~~~~~~~~~~ 241 (258)
T PRK14241 231 LVEIDDTEKIF 241 (258)
T ss_pred EEecCCHHHHH
Confidence 88888888775
No 155
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.95 E-value=6.4e-28 Score=210.27 Aligned_cols=152 Identities=25% Similarity=0.290 Sum_probs=105.4
Q ss_pred EEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC------cccccccce
Q 023563 54 SPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------KDTRYGLDS 124 (280)
Q Consensus 54 ~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------~~~~~~~~~ 124 (280)
+++|++++|++ +.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-... ...+..+.+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLL-RLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 36899999987 7899999999999999999999999999999 99999732 22222211100 001122233
Q ss_pred eeeeccc-ccc---------------------------cccccCchHHHHHH--------------hhhhccCCCEEEEe
Q 023563 125 IVTHDGV-KLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIGID 162 (280)
Q Consensus 125 v~~~~~~-~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLD 162 (280)
+++.... ... .+...++....++. ++||+.+|++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 159 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD 159 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 3332110 000 01111222221111 57899999999999
Q ss_pred CcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 163 EAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 163 EP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
||++.. .+++.|++++++ |.|||++|||++++.+ +||++++|++
T Consensus 160 EPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~----------~~d~i~~l~~ 209 (211)
T cd03225 160 EPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLE----------LADRVIVLED 209 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHH----------hCCEEEEEeC
Confidence 997654 478888888876 9999999999999986 8999999975
No 156
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.95 E-value=1.8e-27 Score=209.96 Aligned_cols=158 Identities=14% Similarity=0.085 Sum_probs=108.7
Q ss_pred ccEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcc--------
Q 023563 51 SMVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKD-------- 117 (280)
Q Consensus 51 ~~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~-------- 117 (280)
++|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-.....
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLL-AILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 58999999999975 3599999999999999999999999999999 99999832 2222221110000
Q ss_pred -c-ccccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhcc
Q 023563 118 -T-RYGLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYD 154 (280)
Q Consensus 118 -~-~~~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~ 154 (280)
. +..++++++...... ..+...++.+..++. +++|+.
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 0 012233332211100 001111222222111 568999
Q ss_pred CCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563 155 QVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE 220 (280)
Q Consensus 155 ~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~ 220 (280)
+|++||||||++.+ .++++|++++++.|.|||++|||++++. .||++++|++ +++
T Consensus 164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-----------~~d~i~~l~~g~i~ 225 (228)
T PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-----------RCDRRLRLVNGQLQ 225 (228)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-----------hCCEEEEEECCEEE
Confidence 99999999997654 4788888887655899999999999874 6999999998 664
No 157
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.3e-27 Score=217.14 Aligned_cols=166 Identities=16% Similarity=0.173 Sum_probs=118.5
Q ss_pred cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--------ccccc
Q 023563 52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--------DTRYG 121 (280)
Q Consensus 52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--------~~~~~ 121 (280)
||+++|++++|+ ++.+++|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-.... ..+..
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLF-LHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 588999999996 46799999999999999999999999999999 99999732 122222111000 01122
Q ss_pred cceeeeecc-ccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563 122 LDSIVTHDG-VKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVI 159 (280)
Q Consensus 122 ~~~v~~~~~-~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lL 159 (280)
++++++... ..+ ..+...++..+.++. |++++.+|++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 159 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII 159 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 233333210 000 011111222222111 57899999999
Q ss_pred EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||||++.. .++++|.+++++ |.|||++|||++++.+ +||++++|++ ++++.|+++++.
T Consensus 160 llDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 160 VLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPV----------YADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHh
Confidence 999996644 588889888765 9999999999999976 8999999999 999999999876
No 158
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=2.8e-28 Score=207.63 Aligned_cols=178 Identities=21% Similarity=0.219 Sum_probs=131.5
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC---------eeEEEecCCcccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG---------RNVAVIKSNKDTRYG 121 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g---------~~i~~~~~~~~~~~~ 121 (280)
++|+++||+++|++..+|+++||+|.+||.-+|||||||||||++ -+|.|..... .++.-++.+...+.+
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~m-D~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLM-DVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeee-eeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 479999999999999999999999999999999999999999999 9999864322 222222222223455
Q ss_pred cceeeeeccccccc-----------------------------------ccccCchHHHHHH--------------hhhh
Q 023563 122 LDSIVTHDGVKLPC-----------------------------------CALTTLSSFRQKF--------------GSDA 152 (280)
Q Consensus 122 ~~~v~~~~~~~~~~-----------------------------------~~~~~l~~~~~~~--------------a~aL 152 (280)
++.-||....+... +...++.+.+++. |+-+
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll 162 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLL 162 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheee
Confidence 55545422211111 1111222222221 3347
Q ss_pred ccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563 153 YDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR 225 (280)
Q Consensus 153 ~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~ 225 (280)
+++|++||+|||... ...-++|++++. ..+|++|.|||.++++ +|++|.+|+. .+.+.|+.
T Consensus 163 ~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~Fvr~----------~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 163 AQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFVRE----------IADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred ccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHHHHH----------hhheeEEEeccceeecccH
Confidence 899999999999443 246788889886 7899999999999997 9999999999 99999999
Q ss_pred ceeeeeecCCCcEEEeCCc
Q 023563 226 AFFTLRKTEETKTELIGGS 244 (280)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~ 244 (280)
+++. .++.+.++|-|.
T Consensus 231 d~v~---~dp~ViEvYLGr 246 (249)
T COG4674 231 DEVQ---NDPKVIEVYLGR 246 (249)
T ss_pred HHhh---cCcceEeeeccc
Confidence 9998 788888888553
No 159
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.6e-28 Score=219.80 Aligned_cols=167 Identities=16% Similarity=0.109 Sum_probs=118.5
Q ss_pred ccEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC------ccccc
Q 023563 51 SMVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------KDTRY 120 (280)
Q Consensus 51 ~~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------~~~~~ 120 (280)
++|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.... ...+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 81 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTA-RLIDGLFEEFEGKVKIDGELLTAENVWNLRR 81 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCCEEEECCEECCcCCHHHHhc
Confidence 37999999999974 3599999999999999999999999999999 99999732 11222111100 00122
Q ss_pred ccceeeeecc-cccc---------------------------cccccCchHHHHHH--------------hhhhccCCCE
Q 023563 121 GLDSIVTHDG-VKLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQVDV 158 (280)
Q Consensus 121 ~~~~v~~~~~-~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~l 158 (280)
.++++++... .... .+...++..+.++. |++|+.+|++
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 82 KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred ceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 2333333211 0000 01111222222211 6789999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||||++.. .+++.|.+++++.|.|||++|||++++. .||++++|++ +++..|+++++.
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-----------SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-----------hCCEEEEEECCEEEEeCCHHHHh
Confidence 9999997654 5888888888756999999999999985 6999999999 999999998876
No 160
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=1.4e-27 Score=217.01 Aligned_cols=167 Identities=16% Similarity=0.108 Sum_probs=118.3
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---------CeeEEEecCCc------
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---------GRNVAVIKSNK------ 116 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---------g~~i~~~~~~~------ 116 (280)
||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+... ...+.+.....
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLL-KALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 58999999999999999999999999999999999999999999 999997532 23333221110
Q ss_pred ccccccceeeeecccccc-------------------------------cccccCchHHHHHH--------------hhh
Q 023563 117 DTRYGLDSIVTHDGVKLP-------------------------------CCALTTLSSFRQKF--------------GSD 151 (280)
Q Consensus 117 ~~~~~~~~v~~~~~~~~~-------------------------------~~~~~~l~~~~~~~--------------a~a 151 (280)
..+..+.++++.....+. .+...++..+.++. +++
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 159 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV 159 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 001112222221110000 00011121111111 567
Q ss_pred hc---------cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563 152 AY---------DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT 216 (280)
Q Consensus 152 L~---------~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~ 216 (280)
|+ .+|++||||||++.. .++++|+++.++.|.|||++|||++++.+ +||++++|+
T Consensus 160 l~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~----------~~d~i~~l~ 229 (272)
T PRK13547 160 LAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAAR----------HADRIAMLA 229 (272)
T ss_pred HhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH----------hCCEEEEEE
Confidence 88 499999999997654 58888888876558999999999999876 999999999
Q ss_pred c-eeccccCcceee
Q 023563 217 A-RCEFCGKRAFFT 229 (280)
Q Consensus 217 ~-~i~~~g~~~~~~ 229 (280)
+ +++..|+++++.
T Consensus 230 ~G~i~~~g~~~~~~ 243 (272)
T PRK13547 230 DGAIVAHGAPADVL 243 (272)
T ss_pred CCeEEEecCHHHHc
Confidence 9 999999988775
No 161
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=215.56 Aligned_cols=167 Identities=13% Similarity=0.061 Sum_probs=118.7
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------- 116 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------- 116 (280)
..+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLL-RTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 3479999999999988899999999999999999999999999999 99999852 223332221110
Q ss_pred -ccccccceeeeeccccc---------------------------ccccccCc----hHHHHHH--------------hh
Q 023563 117 -DTRYGLDSIVTHDGVKL---------------------------PCCALTTL----SSFRQKF--------------GS 150 (280)
Q Consensus 117 -~~~~~~~~v~~~~~~~~---------------------------~~~~~~~l----~~~~~~~--------------a~ 150 (280)
..+..++++++...... ..+...++ ....++. ++
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 169 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR 169 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 01222333333211000 00011111 0111111 57
Q ss_pred hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
+|+.+|++||||||++.. .+++.|+++. + +.|||++||+++++.+ +||++++|++ +++..|
T Consensus 170 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~g 237 (260)
T PRK10744 170 GIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQQAAR----------CSDYTAFMYLGELIEFG 237 (260)
T ss_pred HHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeC
Confidence 899999999999997644 4788888885 3 7899999999999876 9999999999 999888
Q ss_pred Ccceee
Q 023563 224 KRAFFT 229 (280)
Q Consensus 224 ~~~~~~ 229 (280)
+++++.
T Consensus 238 ~~~~~~ 243 (260)
T PRK10744 238 NTDTIF 243 (260)
T ss_pred CHHHHH
Confidence 888775
No 162
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.95 E-value=3.6e-27 Score=207.48 Aligned_cols=162 Identities=16% Similarity=0.180 Sum_probs=114.0
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCe---------------eEEEecCCc
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGR---------------NVAVIKSNK 116 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~---------------~i~~~~~~~ 116 (280)
|+++|++++|+++.+|+++||+|++||+++|+||||||||||+ ++|+|+.. ... .+++++|..
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLL-KMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 4789999999988999999999999999999999999999999 99999732 112 233333332
Q ss_pred cccc--ccceeee------e--cccccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH-----
Q 023563 117 DTRY--GLDSIVT------H--DGVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF----- 167 (280)
Q Consensus 117 ~~~~--~~~~v~~------~--~~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~----- 167 (280)
.... .+...+. . .......+...++....++. +++++.+|++||||||++.
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~ 159 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG 159 (223)
T ss_pred CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHH
Confidence 1100 0000000 0 00000111122333222221 5789999999999999654
Q ss_pred -HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563 168 -EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 168 -~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~ 226 (280)
..++++|++++++ |.|||++|||++++.+ +||++++|++ +++..|++.
T Consensus 160 ~~~l~~~L~~~~~~-~~tiii~sH~~~~~~~----------~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 160 IQELRELIRSFPEQ-GITVILSSHILSEVQQ----------LADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEcCCHHHHHH----------hcCEEEEEeCCEEEEecChh
Confidence 4578888888765 9999999999999976 9999999999 888877764
No 163
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.4e-27 Score=213.78 Aligned_cols=167 Identities=14% Similarity=0.082 Sum_probs=118.3
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------- 116 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------- 116 (280)
.|+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-....
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFL-RCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred ccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4689999999999988899999999999999999999999999999 99999742 122222211100
Q ss_pred -ccccccceeeeecccc---------c------------------ccccccCc----hHHHHHH--------------hh
Q 023563 117 -DTRYGLDSIVTHDGVK---------L------------------PCCALTTL----SSFRQKF--------------GS 150 (280)
Q Consensus 117 -~~~~~~~~v~~~~~~~---------~------------------~~~~~~~l----~~~~~~~--------------a~ 150 (280)
..+..++++++..... + ..+...++ ....++. ++
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 160 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIAR 160 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 0112233333321100 0 00011111 0111111 56
Q ss_pred hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
+++.+|++||||||++.. .+++.|+++.+ +.|||++||+++++.+ +||++++|++ +++..|
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~----------~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 161 TIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASR----------VSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHH----------hcCEEEEEECCeEEEeC
Confidence 899999999999997654 57888888865 6899999999999876 9999999999 999999
Q ss_pred Ccceee
Q 023563 224 KRAFFT 229 (280)
Q Consensus 224 ~~~~~~ 229 (280)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14270 229 KTEKIF 234 (251)
T ss_pred CHHHHh
Confidence 988876
No 164
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.6e-27 Score=213.35 Aligned_cols=166 Identities=14% Similarity=0.091 Sum_probs=118.1
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK-------- 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~-------- 116 (280)
++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFL-RCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 479999999999988999999999999999999999999999999 99999853 233333221110
Q ss_pred ccccccceeeeecccc---------------------------cccccccCch----HHHHHH--------------hhh
Q 023563 117 DTRYGLDSIVTHDGVK---------------------------LPCCALTTLS----SFRQKF--------------GSD 151 (280)
Q Consensus 117 ~~~~~~~~v~~~~~~~---------------------------~~~~~~~~l~----~~~~~~--------------a~a 151 (280)
..+..++++++..... ...+...++. ...++. +++
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lara 161 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARA 161 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHH
Confidence 0122233333321110 0000011110 111111 578
Q ss_pred hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
++.+|++||||||++.. .+++.|+++.+ +.|||++||+++++.+ +||++++|++ +++..|+
T Consensus 162 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~~~~~----------~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14251 162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNLQQAGR----------ISDQTAFLMNGDLIEAGP 229 (251)
T ss_pred HhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHh----------hcCEEEEEECCEEEEeCC
Confidence 99999999999997543 57888888753 7899999999999876 8999999999 9888888
Q ss_pred cceee
Q 023563 225 RAFFT 229 (280)
Q Consensus 225 ~~~~~ 229 (280)
++++.
T Consensus 230 ~~~~~ 234 (251)
T PRK14251 230 TEEMF 234 (251)
T ss_pred HHHHH
Confidence 87765
No 165
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.4e-27 Score=211.51 Aligned_cols=165 Identities=13% Similarity=0.141 Sum_probs=114.9
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe----------eEEEec
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR----------NVAVIK 113 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~----------~i~~~~ 113 (280)
||+++||+++|++.. .++||+|.+|++++|+||||||||||+ ++|+|+.. +|. .+++++
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 77 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLL-NLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF 77 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCeecCcCChhhccEEEEe
Confidence 589999999998644 399999999999999999999999999 99999732 221 233444
Q ss_pred CCccccc--ccceeee---ecc---------cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563 114 SNKDTRY--GLDSIVT---HDG---------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ 165 (280)
Q Consensus 114 ~~~~~~~--~~~~v~~---~~~---------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~ 165 (280)
|...... .+...+. ... .....+...++..+.++. +++++.+|++||||||+
T Consensus 78 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 157 (232)
T PRK10771 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPF 157 (232)
T ss_pred cccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3321100 0000000 000 000011122232222211 56899999999999997
Q ss_pred cHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 166 FFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 166 ~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
... .+.++|++++++.|.|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 158 ~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~----------~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 158 SALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAAR----------IAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHH
Confidence 654 47788888876558999999999999876 9999999999 998888887776
No 166
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.95 E-value=9.1e-28 Score=232.50 Aligned_cols=175 Identities=15% Similarity=0.142 Sum_probs=127.4
Q ss_pred ccEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh----------------------
Q 023563 51 SMVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---------------------- 104 (280)
Q Consensus 51 ~~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---------------------- 104 (280)
++|+++||++.|.. ..+++||||+|.+||++||+|.|||||||++ +.+.|+..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a-~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLA-LALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHH-HHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 48999999999953 2699999999999999999999999999999 88888732
Q ss_pred ------CCeeEEEecCCcccccc----cceee----e-eccc--------ccccccccCchHHHHH--H-----------
Q 023563 105 ------KGRNVAVIKSNKDTRYG----LDSIV----T-HDGV--------KLPCCALTTLSSFRQK--F----------- 148 (280)
Q Consensus 105 ------~g~~i~~~~~~~~~~~~----~~~v~----~-~~~~--------~~~~~~~~~l~~~~~~--~----------- 148 (280)
.|+.+++++|++....+ ++..+ . +... ..+.+...++.+-..+ +
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR 162 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR 162 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence 23344444444322110 00000 0 0000 0011122222211111 2
Q ss_pred ---hhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-e
Q 023563 149 ---GSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-R 218 (280)
Q Consensus 149 ---a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~ 218 (280)
|+||+.+|++||+||||++ .+++++|+++.++.|.++|++|||+..+.+ +||||++|.+ +
T Consensus 163 v~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~----------~aDrv~Vm~~G~ 232 (539)
T COG1123 163 VMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAE----------LADRVVVMYKGE 232 (539)
T ss_pred HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHH----------hcCeEEEEECCE
Confidence 6789999999999999665 469999999999899999999999999998 9999999999 9
Q ss_pred eccccCcceeeeeecCCC
Q 023563 219 CEFCGKRAFFTLRKTEET 236 (280)
Q Consensus 219 i~~~g~~~~~~~~~~~~~ 236 (280)
++..|++++++.++..+.
T Consensus 233 iVE~G~~~~i~~~p~hpY 250 (539)
T COG1123 233 IVETGPTEEILSNPQHPY 250 (539)
T ss_pred EEEecCHHHHHhccCCcc
Confidence 999999999986655443
No 167
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.9e-27 Score=212.98 Aligned_cols=167 Identities=14% Similarity=0.105 Sum_probs=117.0
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C----CeeEEEecCCc-------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K----GRNVAVIKSNK------- 116 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~----g~~i~~~~~~~------- 116 (280)
.+||+++|++++|+++.+|+++||+|.+||+++|+||||||||||+ ++|+|+.. . ...|.+-....
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 3 KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYL-RTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred cceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 3589999999999988999999999999999999999999999999 99999632 1 12222111100
Q ss_pred -ccccccceeeeeccccc-----------------------c----cccccCc----hHHHHHH--------------hh
Q 023563 117 -DTRYGLDSIVTHDGVKL-----------------------P----CCALTTL----SSFRQKF--------------GS 150 (280)
Q Consensus 117 -~~~~~~~~v~~~~~~~~-----------------------~----~~~~~~l----~~~~~~~--------------a~ 150 (280)
..+..+++++|...... . .+...++ ....++. ++
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence 01112333333211000 0 0000011 0111111 67
Q ss_pred hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
+++.+|++||||||++.+ .+.++|+++.+ +.|+|++||+++++.+ +||+|++|++ +++..|
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~----------~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14255 162 VLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMHQASR----------ISDKTAFFLTGNLIEFA 229 (252)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHH----------hCCEEEEEECCEEEEeC
Confidence 899999999999997644 57888888864 5899999999999876 9999999999 999998
Q ss_pred Ccceee
Q 023563 224 KRAFFT 229 (280)
Q Consensus 224 ~~~~~~ 229 (280)
++.++.
T Consensus 230 ~~~~~~ 235 (252)
T PRK14255 230 DTKQMF 235 (252)
T ss_pred CHHHHh
Confidence 888776
No 168
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.95 E-value=9.7e-28 Score=234.09 Aligned_cols=166 Identities=13% Similarity=0.058 Sum_probs=120.1
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------ccccccce
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRYGLDS 124 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~~~~~ 124 (280)
||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+..... ..+..+++
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl-~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALA-RALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 69999999999988899999999999999999999999999999 99999742 222332211110 00111223
Q ss_pred eeeeccc---------------------------ccccccccCchHHHHHH--------------hhhhccCCCEEEEeC
Q 023563 125 IVTHDGV---------------------------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDE 163 (280)
Q Consensus 125 v~~~~~~---------------------------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDE 163 (280)
++|.... ....+...++.++.++. |++|+.+|++|||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDE 161 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3321110 00011122232222221 568999999999999
Q ss_pred cccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 164 AQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 164 P~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|++.+ .++++|++++++ |.|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 162 Pt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~~~~~~----------~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 162 PFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPD----------FVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred CcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHh----------hCCEEEEEECCEEEEeCCHHHHh
Confidence 97654 588899998775 9999999999999986 9999999999 999999887765
No 169
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=7.5e-28 Score=203.08 Aligned_cols=163 Identities=19% Similarity=0.245 Sum_probs=127.2
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYGLD 123 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~~~ 123 (280)
||.+++|.++|+..+. .++++|+.||+++|+||||||||||+ ++|+|+.. +|.+.+..+| ...+++
T Consensus 1 ~l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLL-nLIAGF~~P~~G~i~i~g~d~t~~~P---~~RPVS 74 (231)
T COG3840 1 MLALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLL-NLIAGFETPASGEILINGVDHTASPP---AERPVS 74 (231)
T ss_pred CccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHH-HHHHhccCCCCceEEEcCeecCcCCc---ccCChh
Confidence 4788999999998664 67899999999999999999999999 99999843 3444332222 245566
Q ss_pred eeeeeccccccc----------------------------ccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563 124 SIVTHDGVKLPC----------------------------CALTTLSSFRQKF--------------GSDAYDQVDVIGI 161 (280)
Q Consensus 124 ~v~~~~~~~~~~----------------------------~~~~~l~~~~~~~--------------a~aL~~~p~lLlL 161 (280)
.+||..++ +.. ...+++..+.++. ||+|+.+-+||||
T Consensus 75 mlFQEnNL-FaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLL 153 (231)
T COG3840 75 MLFQENNL-FAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLL 153 (231)
T ss_pred hhhhcccc-chhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEe
Confidence 66654332 221 1123444444433 6789999999999
Q ss_pred eCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563 162 DEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR 231 (280)
Q Consensus 162 DEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~ 231 (280)
|||.+. .+++.++.+++++++.|++||||.++.+.+ ++|+++++++ ++.+.|+.++++.+
T Consensus 154 DEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~----------ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 154 DEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAAR----------IADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred cCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHH----------hhhceEEEeCCEEEeeccHHHHhcc
Confidence 999664 468999999999999999999999999997 9999999999 99999999988743
No 170
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.1e-27 Score=214.85 Aligned_cols=167 Identities=13% Similarity=0.059 Sum_probs=119.4
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------- 116 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------- 116 (280)
.++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-....
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYL-RSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 3489999999999988999999999999999999999999999999 99999852 233332211110
Q ss_pred -ccccccceeeeeccccc---------c------------------cccccCch----HHHHHH--------------hh
Q 023563 117 -DTRYGLDSIVTHDGVKL---------P------------------CCALTTLS----SFRQKF--------------GS 150 (280)
Q Consensus 117 -~~~~~~~~v~~~~~~~~---------~------------------~~~~~~l~----~~~~~~--------------a~ 150 (280)
..+..++++++...... . .+...++. ...++. ++
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~lar 176 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIAR 176 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHH
Confidence 01223334443211100 0 00011110 111111 67
Q ss_pred hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
+++.+|++||||||++.. .+.++|+++. + +.|||++||+++++.+ +||++++|++ +++..|
T Consensus 177 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~----------~~d~i~~l~~G~i~~~g 244 (267)
T PRK14237 177 AIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQQAAR----------ASDYTAFFYLGDLIEYD 244 (267)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHH----------hcCEEEEEECCEEEEeC
Confidence 899999999999997654 4778888885 3 7899999999999876 9999999999 999999
Q ss_pred Ccceee
Q 023563 224 KRAFFT 229 (280)
Q Consensus 224 ~~~~~~ 229 (280)
+++++.
T Consensus 245 ~~~~~~ 250 (267)
T PRK14237 245 KTRNIF 250 (267)
T ss_pred CHHHHh
Confidence 988876
No 171
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.95 E-value=2e-27 Score=212.60 Aligned_cols=165 Identities=15% Similarity=0.118 Sum_probs=114.4
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc---hhCCeeEEEecCC-------ccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE---TQKGRNVAVIKSN-------KDTRY 120 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl---~~~g~~i~~~~~~-------~~~~~ 120 (280)
++|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+ ......+.+-... ...+.
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLS-KVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHH-HHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 479999999999988899999999999999999999999999999 999996 2222222211100 00000
Q ss_pred ccceeeeeccc----------------------------------ccccccccCch-HHH-------------HH--Hhh
Q 023563 121 GLDSIVTHDGV----------------------------------KLPCCALTTLS-SFR-------------QK--FGS 150 (280)
Q Consensus 121 ~~~~v~~~~~~----------------------------------~~~~~~~~~l~-~~~-------------~~--~a~ 150 (280)
.+.++++.... ....+...++. ... .+ .|+
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~ 164 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQ 164 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHH
Confidence 11122211000 00001111111 010 11 167
Q ss_pred hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccc-cceEEEeec-eeccc
Q 023563 151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPL-ADSVTKLTA-RCEFC 222 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~-aD~i~~L~~-~i~~~ 222 (280)
+|+.+|++||||||++.. .++++|++++++ |.|||++|||++++.+ + ||++++|++ +++..
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~~tH~~~~~~~----------~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 165 MALLDSELAILDETDSGLDIDALKIIAEGINKLMTS-ENSIILITHYQRLLDY----------IKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHh----------hhCCEEEEEeCCEEEEe
Confidence 899999999999997654 478888888764 9999999999999875 6 899999999 99888
Q ss_pred cCcce
Q 023563 223 GKRAF 227 (280)
Q Consensus 223 g~~~~ 227 (280)
|+++.
T Consensus 234 ~~~~~ 238 (252)
T CHL00131 234 GDAEL 238 (252)
T ss_pred cChhh
Confidence 88873
No 172
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.95 E-value=3e-27 Score=206.15 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=107.3
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--------ccccccc
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--------DTRYGLD 123 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--------~~~~~~~ 123 (280)
|+++|++++|+++.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-.... ..+..+.
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLL-RCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 4789999999988999999999999999999999999999999 99999832 222222111100 0112233
Q ss_pred eeeeeccccc----------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEE
Q 023563 124 SIVTHDGVKL----------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGI 161 (280)
Q Consensus 124 ~v~~~~~~~~----------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlL 161 (280)
++++...... ..+...++....++. +++++.+|++|||
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 159 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF 159 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3333211100 001111222221111 5689999999999
Q ss_pred eCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 162 DEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 162 DEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
|||++. ..+.+.|++++++ |+|||++|||++++.+ +||++++|++
T Consensus 160 DEP~~~LD~~~~~~l~~~l~~~~~~-~~tvi~~sh~~~~~~~----------~~d~i~~l~~ 210 (213)
T cd03262 160 DEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFARE----------VADRVIFMDD 210 (213)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHH----------hCCEEEEEeC
Confidence 999654 4578889988875 9999999999999976 9999999987
No 173
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.95 E-value=1.1e-27 Score=208.02 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=115.1
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---hCCeeEEEecCCcc-------ccccc
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---QKGRNVAVIKSNKD-------TRYGL 122 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~~g~~i~~~~~~~~-------~~~~~ 122 (280)
|+++|++++|+++.+++|+||+|.+||+++|+||||||||||+ ++|+|+. .....+.+...... .+..+
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLA-KTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHH-HHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 4689999999988999999999999999999999999999999 9999972 33344443222110 12224
Q ss_pred ceeeeecccccccccc--------cCchHH-HH--HHhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEE
Q 023563 123 DSIVTHDGVKLPCCAL--------TTLSSF-RQ--KFGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTV 185 (280)
Q Consensus 123 ~~v~~~~~~~~~~~~~--------~~l~~~-~~--~~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tv 185 (280)
.++++... .++.... ..++.= .. ..+++++.+|++||||||++. ..+++.|++++++ |.||
T Consensus 80 ~~v~q~~~-~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~-~~ti 157 (200)
T cd03217 80 FLAFQYPP-EIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE-GKSV 157 (200)
T ss_pred EEeecChh-hccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC-CCEE
Confidence 44544322 1211111 112111 11 127899999999999999654 4588888888765 8999
Q ss_pred EEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563 186 IVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR 225 (280)
Q Consensus 186 iivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~ 225 (280)
|++||+++++.+ -+||++++|++ ++++.|+.
T Consensus 158 ii~sh~~~~~~~---------~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 158 LIITHYQRLLDY---------IKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred EEEecCHHHHHH---------hhCCEEEEEECCEEEEEccH
Confidence 999999998853 04999999999 88877733
No 174
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.95 E-value=1.3e-27 Score=202.83 Aligned_cols=151 Identities=21% Similarity=0.206 Sum_probs=107.9
Q ss_pred EEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC------cccccccc
Q 023563 53 VSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------KDTRYGLD 123 (280)
Q Consensus 53 l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------~~~~~~~~ 123 (280)
|+++|++++|++ +.+++++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-... ...+..+.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLA-RLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHH-HHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 478999999975 5699999999999999999999999999999 99999843 22233221110 01123344
Q ss_pred eeeeecccccccccccC-ch-HHHHH--HhhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechh
Q 023563 124 SIVTHDGVKLPCCALTT-LS-SFRQK--FGSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGD 193 (280)
Q Consensus 124 ~v~~~~~~~~~~~~~~~-l~-~~~~~--~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~ 193 (280)
++++... .++.....+ ++ ....+ .+++++.+|++||||||++.. .+++.|++++++ |+|+|++|||++
T Consensus 80 ~~~q~~~-~~~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~ 157 (173)
T cd03246 80 YLPQDDE-LFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAA-GATRIVIAHRPE 157 (173)
T ss_pred EECCCCc-cccCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 4544332 222211222 21 11122 278999999999999997654 578888888765 999999999999
Q ss_pred HhhhccCCccccccccceEEEeec
Q 023563 194 YLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 194 ~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
++. +||++++|++
T Consensus 158 ~~~-----------~~d~v~~l~~ 170 (173)
T cd03246 158 TLA-----------SADRILVLED 170 (173)
T ss_pred HHH-----------hCCEEEEEEC
Confidence 874 7999999987
No 175
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.2e-27 Score=216.86 Aligned_cols=168 Identities=18% Similarity=0.157 Sum_probs=117.7
Q ss_pred CccEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC------ccccc
Q 023563 50 HSMVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------KDTRY 120 (280)
Q Consensus 50 ~~~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------~~~~~ 120 (280)
.++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-... ...+.
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 83 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTIS-KILTGLLKPQSGEIKIDGITISKENLKEIRK 83 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEecCcCCHHHHhc
Confidence 35899999999995 46799999999999999999999999999999 99999842 12222111100 01112
Q ss_pred ccceeeeecc-ccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCE
Q 023563 121 GLDSIVTHDG-VKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDV 158 (280)
Q Consensus 121 ~~~~v~~~~~-~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~l 158 (280)
.++++++... ... ..+...++..+.++. ++||+.+|++
T Consensus 84 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (271)
T PRK13632 84 KIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI 163 (271)
T ss_pred ceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 2333333211 000 001111222222111 5789999999
Q ss_pred EEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||||++. ..++++|++++++.+.|||++||+++++. .||++++|++ +++..|+++++.
T Consensus 164 llLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-----------~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-----------LADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-----------hCCEEEEEECCEEEEecCHHHHh
Confidence 999999654 45888999887653599999999999874 7999999999 988889888776
No 176
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.8e-27 Score=212.66 Aligned_cols=165 Identities=13% Similarity=0.100 Sum_probs=116.6
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCC-------ccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSN-------KDT 118 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~-------~~~ 118 (280)
+|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+... ...+.+-... ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLL-RCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHH-HHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 68999999999988999999999999999999999999999999 999997431 2222221100 011
Q ss_pred ccccceeeeeccccc---------c------------------cccccCch----HHHHH--------------Hhhhhc
Q 023563 119 RYGLDSIVTHDGVKL---------P------------------CCALTTLS----SFRQK--------------FGSDAY 153 (280)
Q Consensus 119 ~~~~~~v~~~~~~~~---------~------------------~~~~~~l~----~~~~~--------------~a~aL~ 153 (280)
+..++++++...... . .+...++. ...++ .+++|+
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA 161 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH
Confidence 222333333211000 0 00001110 11111 167899
Q ss_pred cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563 154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~ 226 (280)
.+|++||||||++.. .++++|+++++ +.|||++||+++++.+ +||++++|++ +++..|+++
T Consensus 162 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~----------~~d~i~~l~~G~i~~~g~~~ 229 (249)
T PRK14253 162 MEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQARR----------ISDRTAFFLMGELVEHDDTQ 229 (249)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHH----------hCCEEEEEECCEEEEeCCHH
Confidence 999999999997644 47888888864 6899999999999886 9999999999 998888887
Q ss_pred eee
Q 023563 227 FFT 229 (280)
Q Consensus 227 ~~~ 229 (280)
++.
T Consensus 230 ~~~ 232 (249)
T PRK14253 230 VIF 232 (249)
T ss_pred HHH
Confidence 765
No 177
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.4e-27 Score=215.38 Aligned_cols=166 Identities=14% Similarity=0.078 Sum_probs=117.7
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK-------- 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~-------- 116 (280)
++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....
T Consensus 19 ~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 19 SVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLL-RCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred ceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHH-HHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 389999999999988899999999999999999999999999999 99999742 122332211110
Q ss_pred ccccccceeeeeccccc-------------------------ccccccCc----hHHHHHH--------------hhhhc
Q 023563 117 DTRYGLDSIVTHDGVKL-------------------------PCCALTTL----SSFRQKF--------------GSDAY 153 (280)
Q Consensus 117 ~~~~~~~~v~~~~~~~~-------------------------~~~~~~~l----~~~~~~~--------------a~aL~ 153 (280)
..+..+++++++..... ..+...++ .+..++. |+||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 177 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA 177 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 11222333333211100 00000111 0111111 67899
Q ss_pred cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee---------c-
Q 023563 154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT---------A- 217 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~---------~- 217 (280)
.+|++||||||++.+ .+.++|.++++ +.|||++|||++++.+ +||++++|+ +
T Consensus 178 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~~~----------~~d~i~~l~~~~~~~~~~~G 245 (274)
T PRK14265 178 MKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNMQQASR----------VADWTAFFNTEIDEYGKRRG 245 (274)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH----------hCCEEEEEecccccccccCc
Confidence 999999999997654 47888888864 6899999999999986 999999997 6
Q ss_pred eeccccCcceee
Q 023563 218 RCEFCGKRAFFT 229 (280)
Q Consensus 218 ~i~~~g~~~~~~ 229 (280)
+++..|+++++.
T Consensus 246 ~~~~~g~~~~~~ 257 (274)
T PRK14265 246 KLVEFSPTEQMF 257 (274)
T ss_pred eEEEeCCHHHHH
Confidence 888888888876
No 178
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.5e-27 Score=213.96 Aligned_cols=169 Identities=12% Similarity=0.085 Sum_probs=119.4
Q ss_pred CCCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-----
Q 023563 48 FIHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK----- 116 (280)
Q Consensus 48 ~~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~----- 116 (280)
...++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....
T Consensus 21 ~~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl-~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 21 DEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLL-RCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CCCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHH-HHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 345589999999999988899999999999999999999999999999 99999843 223332211110
Q ss_pred ---ccccccceeeeeccccc---------------------------ccccccCch----HHHHHH--------------
Q 023563 117 ---DTRYGLDSIVTHDGVKL---------------------------PCCALTTLS----SFRQKF-------------- 148 (280)
Q Consensus 117 ---~~~~~~~~v~~~~~~~~---------------------------~~~~~~~l~----~~~~~~-------------- 148 (280)
..+..+.++++...... ..+...++. ...++.
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 179 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVI 179 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHH
Confidence 01222333333211000 000011111 011111
Q ss_pred hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563 149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF 221 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~ 221 (280)
|++++.+|++||||||+... .+++.|+++++ +.|||++||+++++.+ +||++++|++ +++.
T Consensus 180 aral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~----------~~d~i~~l~~G~i~~ 247 (272)
T PRK14236 180 ARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQQAAR----------VSDYTAFMYMGKLVE 247 (272)
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHh----------hCCEEEEEECCEEEe
Confidence 57899999999999996644 47888888864 6899999999999876 9999999999 9988
Q ss_pred ccCcceee
Q 023563 222 CGKRAFFT 229 (280)
Q Consensus 222 ~g~~~~~~ 229 (280)
.|+++++.
T Consensus 248 ~g~~~~~~ 255 (272)
T PRK14236 248 YGDTDTLF 255 (272)
T ss_pred cCCHHHHh
Confidence 89888775
No 179
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.2e-27 Score=212.59 Aligned_cols=167 Identities=16% Similarity=0.110 Sum_probs=118.4
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCc-------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNK------- 116 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~------- 116 (280)
+++|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+ ++|+|+... ...+.+-....
T Consensus 2 ~~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 2 DPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLL-RALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred CceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 4579999999999988899999999999999999999999999999 999997432 12222211100
Q ss_pred -ccccccceeeeeccccc---------c------------------cccccCch----HHHHHH--------------hh
Q 023563 117 -DTRYGLDSIVTHDGVKL---------P------------------CCALTTLS----SFRQKF--------------GS 150 (280)
Q Consensus 117 -~~~~~~~~v~~~~~~~~---------~------------------~~~~~~l~----~~~~~~--------------a~ 150 (280)
..+..++++++...... . .+...++. .+.++. ++
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar 160 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIAR 160 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 11222333333211100 0 00001111 111111 57
Q ss_pred hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
+|+.+|++||||||++.. .+.++|+++. + +.|||++||+++++.+ +||++++|++ +++..|
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~~~~~~----------~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 161 VLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNMQQAAR----------ASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHh----------hCCEEEEEeCCeEEEeC
Confidence 899999999999997654 4778888874 4 8999999999999986 8999999999 998889
Q ss_pred Ccceee
Q 023563 224 KRAFFT 229 (280)
Q Consensus 224 ~~~~~~ 229 (280)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14249 229 RTGEIF 234 (251)
T ss_pred CHHHHH
Confidence 888876
No 180
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.7e-27 Score=211.21 Aligned_cols=166 Identities=15% Similarity=0.148 Sum_probs=118.1
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK-------- 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~-------- 116 (280)
..|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVL-RSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 368999999999988899999999999999999999999999999 99999852 123333221110
Q ss_pred ccccccceeeeeccccc----------------------------ccccccCchH----HHHH--------------Hhh
Q 023563 117 DTRYGLDSIVTHDGVKL----------------------------PCCALTTLSS----FRQK--------------FGS 150 (280)
Q Consensus 117 ~~~~~~~~v~~~~~~~~----------------------------~~~~~~~l~~----~~~~--------------~a~ 150 (280)
..+..+.++++...... ..+...++.. ..++ .++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 01122333333211000 0000111111 1101 056
Q ss_pred hhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
+++.+|++||||||++. ..+++.|+++.+ ++|||++||+++++.+ +||++++|++ +++..|
T Consensus 162 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~----------~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAAR----------VSDYTAFFYMGDLVECG 229 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHh----------hCCEEEEEECCEEEEeC
Confidence 89999999999999654 457888888864 6899999999999876 9999999999 998899
Q ss_pred Ccceee
Q 023563 224 KRAFFT 229 (280)
Q Consensus 224 ~~~~~~ 229 (280)
+++++.
T Consensus 230 ~~~~~~ 235 (252)
T PRK14256 230 ETKKIF 235 (252)
T ss_pred CHHHHH
Confidence 988876
No 181
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.1e-27 Score=210.45 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=117.2
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc----ccccccceeee
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK----DTRYGLDSIVT 127 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~----~~~~~~~~v~~ 127 (280)
|+++|++++|+++.+++++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+..... ..+..++++++
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLL-RLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 4689999999988999999999999999999999999999999 99999843 222332211100 01112223332
Q ss_pred eccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCccc
Q 023563 128 HDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQF 166 (280)
Q Consensus 128 ~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~ 166 (280)
...... ..+...++..+.++. +++++.+|++||||||+.
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG 159 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 211100 001111222211111 578999999999999966
Q ss_pred HH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 167 FE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 167 ~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
.. .+++.|++++++.|.|||++||+++++.+ +||++++|++ +++..|+++++.
T Consensus 160 gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~----------~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 160 ALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALT----------MSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----------hcCEEEEEECCEEEecCCHHHHH
Confidence 54 58888888876558999999999999876 9999999999 888888776665
No 182
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.9e-27 Score=211.95 Aligned_cols=167 Identities=14% Similarity=0.095 Sum_probs=118.0
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCC--------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSN-------- 115 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~-------- 115 (280)
.++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+....
T Consensus 4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLL-RCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHH-HHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 3589999999999998999999999999999999999999999999 99998732 12223221111
Q ss_pred cccccccceeeeecccc---------cc------------------cccccCch----HHHHHH--------------hh
Q 023563 116 KDTRYGLDSIVTHDGVK---------LP------------------CCALTTLS----SFRQKF--------------GS 150 (280)
Q Consensus 116 ~~~~~~~~~v~~~~~~~---------~~------------------~~~~~~l~----~~~~~~--------------a~ 150 (280)
...+..++++++..... +. .+...++. ...++. ++
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIAR 162 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHH
Confidence 01122233333322111 00 00000110 001111 56
Q ss_pred hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
+++.+|++||||||++.. .+.++|+++.+ ++|||++||+++++.+ +||++++|++ +++..|
T Consensus 163 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~----------~~d~v~~l~~G~i~~~g 230 (253)
T PRK14261 163 TLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAAR----------VSDYTGFMYLGKLIEFD 230 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHh----------hCCEEEEEECCEEEEcC
Confidence 899999999999997654 47788888864 6899999999999976 9999999999 999889
Q ss_pred Ccceee
Q 023563 224 KRAFFT 229 (280)
Q Consensus 224 ~~~~~~ 229 (280)
+++++.
T Consensus 231 ~~~~~~ 236 (253)
T PRK14261 231 KTTQIF 236 (253)
T ss_pred CHHHHH
Confidence 988775
No 183
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.6e-27 Score=216.00 Aligned_cols=166 Identities=13% Similarity=0.103 Sum_probs=114.9
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCC--------c
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSN--------K 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~--------~ 116 (280)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-... .
T Consensus 12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVL-RSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred ceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHH-HHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 489999999999988999999999999999999999999999999 99999742 22223221110 0
Q ss_pred ccccccceeeeeccccc-------------------------ccccccCc----hHHHHH--------------Hhhhhc
Q 023563 117 DTRYGLDSIVTHDGVKL-------------------------PCCALTTL----SSFRQK--------------FGSDAY 153 (280)
Q Consensus 117 ~~~~~~~~v~~~~~~~~-------------------------~~~~~~~l----~~~~~~--------------~a~aL~ 153 (280)
..+..++++++...... ..+...++ ....++ .+++|+
T Consensus 91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~ 170 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIA 170 (269)
T ss_pred HHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 01122333333211000 00000111 111111 167899
Q ss_pred cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec----------
Q 023563 154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA---------- 217 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~---------- 217 (280)
.+|++||||||++.+ .++++|++++ + +.|||++|||++++.+ +||++++|++
T Consensus 171 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~----------~~d~i~~l~~~~~~~~~~g~ 238 (269)
T PRK14259 171 IEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQQAVR----------VSDMTAFFNAEEVEGGSGGK 238 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHH----------hcCEEEEEeccccccccccc
Confidence 999999999997644 4788888885 3 7899999999999986 9999999984
Q ss_pred --eeccccCcceee
Q 023563 218 --RCEFCGKRAFFT 229 (280)
Q Consensus 218 --~i~~~g~~~~~~ 229 (280)
+++..|+++++.
T Consensus 239 ~g~~~~~~~~~~~~ 252 (269)
T PRK14259 239 VGYLVEFNETKKIF 252 (269)
T ss_pred cceEEEeCCHHHHH
Confidence 456677776665
No 184
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.8e-27 Score=207.54 Aligned_cols=157 Identities=21% Similarity=0.209 Sum_probs=107.0
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe----------eEEEecC
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR----------NVAVIKS 114 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~----------~i~~~~~ 114 (280)
|+++|++++|+++. .|+||+|++||+++|+||||||||||+ ++|+|+.. +|. .+++++|
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLL-NLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 47899999998764 399999999999999999999999999 99999732 222 2334444
Q ss_pred Cccccc--ccceeee---ecc---------cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCccc
Q 023563 115 NKDTRY--GLDSIVT---HDG---------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQF 166 (280)
Q Consensus 115 ~~~~~~--~~~~v~~---~~~---------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~ 166 (280)
...... .+...+. ... .....+...++....++. +++++.+|++||||||++
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~ 157 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFA 157 (211)
T ss_pred ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 322100 0000000 000 000011112222222211 578999999999999976
Q ss_pred HH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 167 FE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 167 ~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
.. .++++|++++++.|.|||++|||++++.+ +||++++|++ +++..
T Consensus 158 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~----------~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 158 ALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR----------LAQRVVFLDNGRIAAQ 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh----------hhCEEEEEECCEEeec
Confidence 54 47888888876559999999999999976 9999999998 76543
No 185
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.95 E-value=2.9e-28 Score=230.63 Aligned_cols=166 Identities=19% Similarity=0.116 Sum_probs=120.5
Q ss_pred EcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Cc------c---c-c
Q 023563 55 PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NK------D---T-R 119 (280)
Q Consensus 55 ~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~------~---~-~ 119 (280)
-.++.+.|+...+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-.. .. . . +
T Consensus 27 ~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLl-r~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~ 105 (382)
T TIGR03415 27 REEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLL-RAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRT 105 (382)
T ss_pred HHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhc
Confidence 45677889999999999999999999999999999999999 99999843 2233322211 00 0 0 1
Q ss_pred cccceeeeeccccccc---------------------------ccccCchHHHHHH--------------hhhhccCCCE
Q 023563 120 YGLDSIVTHDGVKLPC---------------------------CALTTLSSFRQKF--------------GSDAYDQVDV 158 (280)
Q Consensus 120 ~~~~~v~~~~~~~~~~---------------------------~~~~~l~~~~~~~--------------a~aL~~~p~l 158 (280)
..+++++|+....... +...++..+.+++ |++|+.+|++
T Consensus 106 ~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 106 HRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2355555533221100 1111222211111 5789999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR 231 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~ 231 (280)
||||||++.+ ++++.|.++.++.|+|||++|||++++.+ +||+|++|++ +++..|+++++..+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~----------l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALK----------IGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999997654 58888988887669999999999999976 9999999999 99999999988743
No 186
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.95 E-value=3.7e-27 Score=208.03 Aligned_cols=164 Identities=15% Similarity=0.093 Sum_probs=112.1
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------cccccc
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRYGL 122 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~~~ 122 (280)
.++|+++|+++.|+++.+++|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-.... ..+..+
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLL-KIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4589999999999988899999999999999999999999999999 99999732 222221111000 001112
Q ss_pred ceeeeeccc------------------------ccccccccCch-HHHHHH--------------hhhhccCCCEEEEeC
Q 023563 123 DSIVTHDGV------------------------KLPCCALTTLS-SFRQKF--------------GSDAYDQVDVIGIDE 163 (280)
Q Consensus 123 ~~v~~~~~~------------------------~~~~~~~~~l~-~~~~~~--------------a~aL~~~p~lLlLDE 163 (280)
+++++.... ....+...++. .+.++. +++|+.+|++|||||
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE 163 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 222221100 00111112221 111111 678999999999999
Q ss_pred cccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec--eeccccCc
Q 023563 164 AQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA--RCEFCGKR 225 (280)
Q Consensus 164 P~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~--~i~~~g~~ 225 (280)
|+... .+.++|+++.++.|.|||++|||++++. .||++++|++ ..+..|+.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-----------~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 164 ITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-----------HADKVITLQPHAGEMQEARY 222 (225)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-----------hCCEEEEEecccchHhhhhh
Confidence 96543 5788888887656899999999999884 7999999963 66666653
No 187
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.7e-27 Score=238.81 Aligned_cols=170 Identities=15% Similarity=0.075 Sum_probs=122.3
Q ss_pred CccEEEcCceEEeC-----------CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-
Q 023563 50 HSMVSPRPPLFSLQ-----------NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK- 116 (280)
Q Consensus 50 ~~~l~~~~ls~~y~-----------~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~- 116 (280)
.++|+++||++.|+ .+.+|+||||+|++||+++|+||||||||||+ ++|.|+.. ....|.+.....
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLl-k~i~Gl~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTG-RALLRLVESQGGEIIFNGQRID 389 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCcEEEECCEECC
Confidence 46899999999996 14799999999999999999999999999999 99999832 122222111000
Q ss_pred --------ccccccceeeeecc-cc-----------------------------cccccccCch-HHHHHH---------
Q 023563 117 --------DTRYGLDSIVTHDG-VK-----------------------------LPCCALTTLS-SFRQKF--------- 148 (280)
Q Consensus 117 --------~~~~~~~~v~~~~~-~~-----------------------------~~~~~~~~l~-~~~~~~--------- 148 (280)
..+..+++++|... .+ ...+...++. ...+++
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqr 469 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQR 469 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence 00112333333210 00 0111122332 222222
Q ss_pred -----hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 149 -----GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 149 -----a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
|+||+.+|++||||||++.+ .++++|++++++.|.|||++|||++++.+ +||+|++|++
T Consensus 470 QRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~----------~~dri~vl~~ 539 (623)
T PRK10261 470 QRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVER----------ISHRVAVMYL 539 (623)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEEC
Confidence 67899999999999997654 58899999987669999999999999987 9999999999
Q ss_pred -eeccccCcceeee
Q 023563 218 -RCEFCGKRAFFTL 230 (280)
Q Consensus 218 -~i~~~g~~~~~~~ 230 (280)
++++.|++++++.
T Consensus 540 G~iv~~g~~~~i~~ 553 (623)
T PRK10261 540 GQIVEIGPRRAVFE 553 (623)
T ss_pred CEEEEecCHHHHhc
Confidence 9999999998863
No 188
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.95 E-value=5.3e-27 Score=202.78 Aligned_cols=158 Identities=20% Similarity=0.225 Sum_probs=113.2
Q ss_pred cEEEcCceEEeCC------eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--h-CCeeEEEecCCc---ccc
Q 023563 52 MVSPRPPLFSLQN------RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--Q-KGRNVAVIKSNK---DTR 119 (280)
Q Consensus 52 ~l~~~~ls~~y~~------~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--~-~g~~i~~~~~~~---~~~ 119 (280)
.|+++|++++|++ +.+|+++||+|++|++++|+||||||||||+ ++|+|+. . ....+.+..... ..+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl-~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLL-NALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 4899999999975 6799999999999999999999999999999 9999986 3 333443322211 112
Q ss_pred cccceeeeecccccccccc-c---------CchHHH-H--HHhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhh
Q 023563 120 YGLDSIVTHDGVKLPCCAL-T---------TLSSFR-Q--KFGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADH 180 (280)
Q Consensus 120 ~~~~~v~~~~~~~~~~~~~-~---------~l~~~~-~--~~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~ 180 (280)
..+.++++.... ++.... . .++.=. . ..+++|+.+|++||||||++. ..++++|+++.++
T Consensus 82 ~~i~~~~q~~~~-~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~ 160 (194)
T cd03213 82 KIIGYVPQDDIL-HPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT 160 (194)
T ss_pred heEEEccCcccC-CCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 334444443222 111111 1 121111 1 127899999999999999654 4588888888765
Q ss_pred cCCEEEEEEechh-HhhhccCCccccccccceEEEeec-eeccc
Q 023563 181 DGKTVIVAGLDGD-YLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 181 ~g~tviivtHdl~-~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
|+|+|++|||++ ++.+ +||++++|++ +++..
T Consensus 161 -~~tiii~sh~~~~~~~~----------~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 161 -GRTIICSIHQPSSEIFE----------LFDKLLLLSQGRVIYF 193 (194)
T ss_pred -CCEEEEEecCchHHHHH----------hcCEEEEEeCCEEEec
Confidence 999999999996 5655 8999999998 76543
No 189
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.6e-27 Score=211.64 Aligned_cols=168 Identities=11% Similarity=0.070 Sum_probs=120.1
Q ss_pred CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc------
Q 023563 49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------ 116 (280)
Q Consensus 49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------ 116 (280)
.+++|+++||+++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.....
T Consensus 16 ~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 16 TEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFL-RCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CCceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 34589999999999988999999999999999999999999999999 99999753 233333222110
Q ss_pred --ccccccceeeeeccccc----------------------------ccccccCchH----HHHHH--------------
Q 023563 117 --DTRYGLDSIVTHDGVKL----------------------------PCCALTTLSS----FRQKF-------------- 148 (280)
Q Consensus 117 --~~~~~~~~v~~~~~~~~----------------------------~~~~~~~l~~----~~~~~-------------- 148 (280)
..+..++++++...... ..+...++.. ..++.
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 174 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCI 174 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 01122333333211000 0011112211 11111
Q ss_pred hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563 149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF 221 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~ 221 (280)
+++|+.+|++||||||++.. .+.+.|+++++ +.|||++|||++++.+ +||++++|++ +++.
T Consensus 175 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~----------~~d~v~~l~~G~i~~ 242 (267)
T PRK14235 175 ARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQAAR----------VSQRTAFFHLGNLVE 242 (267)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHh----------hCCEEEEEECCEEEE
Confidence 67899999999999996644 57888888854 6899999999999976 9999999999 9999
Q ss_pred ccCcceee
Q 023563 222 CGKRAFFT 229 (280)
Q Consensus 222 ~g~~~~~~ 229 (280)
.|+++++.
T Consensus 243 ~g~~~~~~ 250 (267)
T PRK14235 243 VGDTEKMF 250 (267)
T ss_pred eCCHHHHH
Confidence 99888776
No 190
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.95 E-value=4.2e-27 Score=209.25 Aligned_cols=166 Identities=16% Similarity=0.178 Sum_probs=116.2
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----cccccccceeee
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSIVT 127 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v~~ 127 (280)
|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||+ ++|+|+.. ....+.+...+ ...+..++++++
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLL-RIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 4789999999988999999999999999999999999999999 99999732 12222111100 001112222222
Q ss_pred ecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCccc
Q 023563 128 HDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQF 166 (280)
Q Consensus 128 ~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~ 166 (280)
..... ...+...++..+.++. +++++.+|+++|||||++
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFG 159 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 11100 0001111222111111 568999999999999966
Q ss_pred HH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 167 FE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 167 ~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
.. .+++.|.+++++.|+|||++||+++++.+ +||++++|++ +++..|+.+++.
T Consensus 160 ~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~----------~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 160 ALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAME----------VADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh----------hcCEEEEEECCEEEEecCHHHHH
Confidence 54 47888888876558999999999999876 9999999999 998888888775
No 191
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.6e-27 Score=215.59 Aligned_cols=168 Identities=14% Similarity=0.051 Sum_probs=119.3
Q ss_pred CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc------
Q 023563 49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------ 116 (280)
Q Consensus 49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------ 116 (280)
..++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|.|+.. ....+.+-....
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFL-RAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 45689999999999888899999999999999999999999999999 99999631 333333211110
Q ss_pred --ccccccceeeeecccc---------c------------------ccccccCc----hHHHHHH--------------h
Q 023563 117 --DTRYGLDSIVTHDGVK---------L------------------PCCALTTL----SSFRQKF--------------G 149 (280)
Q Consensus 117 --~~~~~~~~v~~~~~~~---------~------------------~~~~~~~l----~~~~~~~--------------a 149 (280)
..+..++++++..... + ..+...++ .+..++. +
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 194 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence 1122333443321110 0 00000011 1111111 6
Q ss_pred hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
++|+.+|++||||||++.+ .+++.|+++++ +.|||++|||++++.+ +||++++|++ +++..
T Consensus 195 raL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~----------~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 195 RTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQASR----------VSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHH----------hCCEEEEEECCEEEEe
Confidence 7899999999999997654 47788888754 6899999999999876 9999999999 99999
Q ss_pred cCcceee
Q 023563 223 GKRAFFT 229 (280)
Q Consensus 223 g~~~~~~ 229 (280)
|+++++.
T Consensus 263 g~~~~~~ 269 (286)
T PRK14275 263 APTAQLF 269 (286)
T ss_pred CCHHHHH
Confidence 9988776
No 192
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.95 E-value=1.6e-27 Score=203.00 Aligned_cols=155 Identities=15% Similarity=0.117 Sum_probs=109.3
Q ss_pred EEEcCceEEeCCe--eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-----ccccccce
Q 023563 53 VSPRPPLFSLQNR--NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-----DTRYGLDS 124 (280)
Q Consensus 53 l~~~~ls~~y~~~--~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-----~~~~~~~~ 124 (280)
|+++|++++|+++ .+++|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-.... ..+..+++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLL-QLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4789999999764 799999999999999999999999999999 99999843 222332221110 11223444
Q ss_pred eeeecccccccccc----cCchH-HHHH--HhhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEec
Q 023563 125 IVTHDGVKLPCCAL----TTLSS-FRQK--FGSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLD 191 (280)
Q Consensus 125 v~~~~~~~~~~~~~----~~l~~-~~~~--~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHd 191 (280)
+++.... ++.... ..++. ...+ .+++++.+|++||||||++.. .+++.|+++. + +.|||++||+
T Consensus 80 ~~q~~~~-~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~ 156 (178)
T cd03247 80 LNQRPYL-FDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHH 156 (178)
T ss_pred EccCCee-ecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecC
Confidence 4443222 221111 11211 1222 278999999999999997654 4778888774 4 8999999999
Q ss_pred hhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 192 GDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 192 l~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
++++. .||++++|++ ++++.
T Consensus 157 ~~~~~-----------~~d~~~~l~~g~i~~~ 177 (178)
T cd03247 157 LTGIE-----------HMDKILFLENGKIIMQ 177 (178)
T ss_pred HHHHH-----------hCCEEEEEECCEEEec
Confidence 99884 6999999998 77644
No 193
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.8e-27 Score=235.50 Aligned_cols=170 Identities=14% Similarity=0.062 Sum_probs=122.7
Q ss_pred CCccEEEcCceEEeC----CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC---------
Q 023563 49 IHSMVSPRPPLFSLQ----NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS--------- 114 (280)
Q Consensus 49 ~~~~l~~~~ls~~y~----~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~--------- 114 (280)
.+++|+++|++++|+ +..+|+||||+|++||++||+||||||||||+ ++|+|+.. ....+.+-..
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl-~~l~Gll~p~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTA-LALMRLLEQAGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCCeEEEECCEEeccccccc
Confidence 456899999999996 35799999999999999999999999999999 99999842 2222221100
Q ss_pred ------Cc----cc-ccccceeeeecc-ccc-----------------------------ccccccCch---HHHHHH--
Q 023563 115 ------NK----DT-RYGLDSIVTHDG-VKL-----------------------------PCCALTTLS---SFRQKF-- 148 (280)
Q Consensus 115 ------~~----~~-~~~~~~v~~~~~-~~~-----------------------------~~~~~~~l~---~~~~~~-- 148 (280)
.. .. +..+++++|... .+. ..+...++. ..++++
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 00 00 113444444320 000 011122331 112221
Q ss_pred ------------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccc
Q 023563 149 ------------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLAD 210 (280)
Q Consensus 149 ------------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD 210 (280)
|+||+.+|++|||||||+.+ .++++|++++++.|+|||++|||++++.+ +||
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~----------~ad 237 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAE----------IAD 237 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH----------hCC
Confidence 67899999999999997654 48889999987669999999999999986 999
Q ss_pred eEEEeec-eeccccCcceee
Q 023563 211 SVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 211 ~i~~L~~-~i~~~g~~~~~~ 229 (280)
+|++|++ +++..|++++++
T Consensus 238 ri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 238 RVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred EEEEeeCCeecccCCHHHhh
Confidence 9999999 999999988876
No 194
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.94 E-value=2.1e-27 Score=233.43 Aligned_cols=166 Identities=12% Similarity=0.081 Sum_probs=119.5
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---hCCeeEEEe----------cC-----
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---QKGRNVAVI----------KS----- 114 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~~g~~i~~~----------~~----- 114 (280)
|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+ ++|+|+. .....+.+. +|
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl-~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLM-HVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 5789999999988999999999999999999999999999999 9999984 333444332 00
Q ss_pred --------------------Cc----ccccccceeeee-cccccc---------------------------cccccCch
Q 023563 115 --------------------NK----DTRYGLDSIVTH-DGVKLP---------------------------CCALTTLS 142 (280)
Q Consensus 115 --------------------~~----~~~~~~~~v~~~-~~~~~~---------------------------~~~~~~l~ 142 (280)
.. ..+..+++++|. ...... .+...++.
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 00 011224444443 111100 01111222
Q ss_pred HHHHHH--------------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCc
Q 023563 143 SFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSV 202 (280)
Q Consensus 143 ~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~ 202 (280)
++.++. |+||+.+|++||||||++.+ .++++|++++++.|+|||++|||++++.+
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~----- 234 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIED----- 234 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH-----
Confidence 222111 56899999999999997654 47888899876569999999999999986
Q ss_pred cccccccceEEEeec-eeccccCcceee
Q 023563 203 IDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 203 ~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+||+|++|++ +++..|+++++.
T Consensus 235 -----~~d~i~~l~~G~i~~~g~~~~~~ 257 (520)
T TIGR03269 235 -----LSDKAIWLENGEIKEEGTPDEVV 257 (520)
T ss_pred -----hcCEEEEEeCCEEeeecCHHHHH
Confidence 9999999999 888888776554
No 195
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.94 E-value=2.4e-27 Score=222.89 Aligned_cols=162 Identities=17% Similarity=0.158 Sum_probs=114.6
Q ss_pred CceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----------ccccccccee
Q 023563 57 PPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----------KDTRYGLDSI 125 (280)
Q Consensus 57 ~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----------~~~~~~~~~v 125 (280)
||+++|+++.+ |+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.... ...+..++++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl-~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLI-RLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 79999988764 99999999999999999999999999 99999842 22222211100 0112233444
Q ss_pred eeecccccc-------------------------cccccCchHHHHHH--------------hhhhccCCCEEEEeCccc
Q 023563 126 VTHDGVKLP-------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQF 166 (280)
Q Consensus 126 ~~~~~~~~~-------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~ 166 (280)
+|....... .+...++..+.++. |+||+.+|++||||||++
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts 160 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLA 160 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 442211100 01111222222211 678999999999999966
Q ss_pred HH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563 167 FE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR 231 (280)
Q Consensus 167 ~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~ 231 (280)
.+ .+++.|++++++.|+|+|++|||++++.. +||++++|++ +++..|+++++..+
T Consensus 161 ~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 161 ALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLR----------LADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH----------hCCEEEEEeCCEEEEECCHHHHhcC
Confidence 54 58889999887668999999999999976 9999999999 99999998887643
No 196
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.4e-27 Score=212.03 Aligned_cols=168 Identities=14% Similarity=0.111 Sum_probs=118.1
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCc--------
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNK-------- 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~-------- 116 (280)
++|+++|++++|++..+|+|+||+|++|++++|+||||||||||+ ++|+|+... ...+.+..++.
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFL-KCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHH-HHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 479999999999888899999999999999999999999999999 999998542 22333222110
Q ss_pred ccccccceeeeeccccc-----------------c----------cccccCch----HHHHHH--------------hhh
Q 023563 117 DTRYGLDSIVTHDGVKL-----------------P----------CCALTTLS----SFRQKF--------------GSD 151 (280)
Q Consensus 117 ~~~~~~~~v~~~~~~~~-----------------~----------~~~~~~l~----~~~~~~--------------a~a 151 (280)
..+..+.++++...... . .+...++. ....+. |++
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 164 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARA 164 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 01122333333211000 0 00011110 011111 578
Q ss_pred hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec------ee
Q 023563 152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA------RC 219 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~------~i 219 (280)
|+.+|++||||||++.. .+++.|++++++.|.|||++|||++++.+ +||+|++|++ ++
T Consensus 165 l~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~----------~~d~i~~l~~~~~~~G~i 234 (261)
T PRK14258 165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSR----------LSDFTAFFKGNENRIGQL 234 (261)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH----------hcCEEEEEccCCCcCceE
Confidence 99999999999997654 47788888765458999999999999986 9999999994 67
Q ss_pred ccccCcceee
Q 023563 220 EFCGKRAFFT 229 (280)
Q Consensus 220 ~~~g~~~~~~ 229 (280)
+..|+++++.
T Consensus 235 ~~~~~~~~~~ 244 (261)
T PRK14258 235 VEFGLTKKIF 244 (261)
T ss_pred EEeCCHHHHH
Confidence 7778888775
No 197
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=6.4e-27 Score=205.04 Aligned_cols=156 Identities=15% Similarity=0.128 Sum_probs=107.1
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCee---------EEEe
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRN---------VAVI 112 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~---------i~~~ 112 (280)
.++|+++|++++|+++.+++++||+|++||+++|+||||||||||+ ++|+|+.. +|.. ++++
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~ 87 (214)
T PRK13543 9 PPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLL-RVLAGLLHVESGQIQIDGKTATRGDRSRFMAYL 87 (214)
T ss_pred cceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHH-HHHhCCCCCCCeeEEECCEEccchhhhhceEEe
Confidence 4589999999999988899999999999999999999999999999 99999732 2221 3333
Q ss_pred cCCcccccc--cceeee----ecc-----cccccccccCchHHHHH--------------HhhhhccCCCEEEEeCcccH
Q 023563 113 KSNKDTRYG--LDSIVT----HDG-----VKLPCCALTTLSSFRQK--------------FGSDAYDQVDVIGIDEAQFF 167 (280)
Q Consensus 113 ~~~~~~~~~--~~~v~~----~~~-----~~~~~~~~~~l~~~~~~--------------~a~aL~~~p~lLlLDEP~~~ 167 (280)
+|....... +...+. ... .....+...++....++ .+++++.+|++||||||++.
T Consensus 88 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 167 (214)
T PRK13543 88 GHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167 (214)
T ss_pred ecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 332111000 000000 000 00000111122111111 15789999999999999765
Q ss_pred H------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 168 E------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 168 ~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
. .+++.|+++.++ |.|+|++|||++++.+ +||++++|+.
T Consensus 168 LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~----------~~~~i~~l~~ 212 (214)
T PRK13543 168 LDLEGITLVNRMISAHLRG-GGAALVTTHGAYAAPP----------VRTRMLTLEA 212 (214)
T ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEecChhhhhh----------hcceEEEEee
Confidence 4 477888888765 8999999999999986 9999999874
No 198
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.94 E-value=5e-27 Score=231.19 Aligned_cols=168 Identities=16% Similarity=0.195 Sum_probs=120.7
Q ss_pred ccEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCc----
Q 023563 51 SMVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNK---- 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~---- 116 (280)
+||+++|++++|++ +.+|+|+||+|.+||+++|+||||||||||+ ++|+|+... ...+.+.....
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl-~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTA-LSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHH-HHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 48999999999963 5799999999999999999999999999999 999998531 22232211110
Q ss_pred -----ccc-cccceeeeeccc-c-----------------------------cccccccCchH---HHHHH---------
Q 023563 117 -----DTR-YGLDSIVTHDGV-K-----------------------------LPCCALTTLSS---FRQKF--------- 148 (280)
Q Consensus 117 -----~~~-~~~~~v~~~~~~-~-----------------------------~~~~~~~~l~~---~~~~~--------- 148 (280)
..+ ..+++++|.... . ...+...++.+ +.++.
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 000 123333332110 0 00111123322 11211
Q ss_pred -----hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 149 -----GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 149 -----a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
|+||+.+|++||||||++.+ .++++|++++++.|+|||++|||++++.+ +||+|++|++
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~----------~~dri~~l~~ 232 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRK----------LADRVAVMQN 232 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHH----------hcCEEEEEEC
Confidence 67899999999999997765 47888999876568999999999999986 9999999999
Q ss_pred -eeccccCcceee
Q 023563 218 -RCEFCGKRAFFT 229 (280)
Q Consensus 218 -~i~~~g~~~~~~ 229 (280)
+++..|+++++.
T Consensus 233 G~i~~~g~~~~~~ 245 (529)
T PRK15134 233 GRCVEQNRAATLF 245 (529)
T ss_pred CEEEEeCCHHHHh
Confidence 998889887765
No 199
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.2e-27 Score=209.08 Aligned_cols=165 Identities=13% Similarity=0.120 Sum_probs=117.2
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCc--------c
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNK--------D 117 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~--------~ 117 (280)
+|+++|++++|+++.+++|+||+|++|++++|+||||||||||+ ++|+|+... ...+.+-.... .
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFL-RAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 79999999999988999999999999999999999999999999 999997421 12232211110 1
Q ss_pred cccccceeeeeccccccc----------------------------ccccCc----hHHHHHH--------------hhh
Q 023563 118 TRYGLDSIVTHDGVKLPC----------------------------CALTTL----SSFRQKF--------------GSD 151 (280)
Q Consensus 118 ~~~~~~~v~~~~~~~~~~----------------------------~~~~~l----~~~~~~~--------------a~a 151 (280)
.+..++++++........ +...++ ....++. +++
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 112233333321110000 000000 0011111 568
Q ss_pred hccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 152 AYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
++.+|++||||||++. ..+.+.|++++ + ++|||++||+++++.+ +||++++|++ +++..|+
T Consensus 163 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14272 163 LAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMHQAAR----------VSDTTSFFLVGDLVEHGP 230 (252)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCC
Confidence 9999999999999664 45788888885 3 7999999999999986 9999999999 9999999
Q ss_pred cceee
Q 023563 225 RAFFT 229 (280)
Q Consensus 225 ~~~~~ 229 (280)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14272 231 TDQLF 235 (252)
T ss_pred HHHHH
Confidence 88876
No 200
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.94 E-value=6.5e-27 Score=208.73 Aligned_cols=164 Identities=19% Similarity=0.144 Sum_probs=113.8
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---hCCeeEEEecCCcc-------cccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---QKGRNVAVIKSNKD-------TRYG 121 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~~g~~i~~~~~~~~-------~~~~ 121 (280)
||+++|++++|+++.+|+++||+|++|++++|+||||||||||+ ++|+|+. .....+.+-..... .+..
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLS-ATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHH-HHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 58999999999988899999999999999999999999999999 9999983 33333322211100 0111
Q ss_pred cceeeeecccc------------c------------c----------cccccC-------------chHH-HHH--Hhhh
Q 023563 122 LDSIVTHDGVK------------L------------P----------CCALTT-------------LSSF-RQK--FGSD 151 (280)
Q Consensus 122 ~~~v~~~~~~~------------~------------~----------~~~~~~-------------l~~~-~~~--~a~a 151 (280)
+.++++..... . . .+...+ ++.= ..+ .|++
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara 159 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 159 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence 22222211000 0 0 000000 1100 111 1678
Q ss_pred hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccc-cceEEEeec-eecccc
Q 023563 152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPL-ADSVTKLTA-RCEFCG 223 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~-aD~i~~L~~-~i~~~g 223 (280)
++.+|++||||||++.. .+.++|+++++. |+|||++|||++++.. + ||++++|++ +++..|
T Consensus 160 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tiii~sH~~~~~~~----------~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 160 AVLEPELCILDESDSGLDIDALKIVADGVNSLRDG-KRSFIIVTHYQRILDY----------IKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHh----------hhCCEEEEEECCeEEEeC
Confidence 99999999999997654 477788888764 8999999999999875 6 899999998 888888
Q ss_pred Ccce
Q 023563 224 KRAF 227 (280)
Q Consensus 224 ~~~~ 227 (280)
+++.
T Consensus 229 ~~~~ 232 (248)
T PRK09580 229 DFTL 232 (248)
T ss_pred CHHH
Confidence 7763
No 201
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-26 Score=207.64 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=116.3
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch----hCCeeEEEecCCc------ccccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET----QKGRNVAVIKSNK------DTRYG 121 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~----~~g~~i~~~~~~~------~~~~~ 121 (280)
+++++|+++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+. .....+.+..... ..+..
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFL-RCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 68999999999988999999999999999999999999999999 9999974 1222222111100 01112
Q ss_pred cceeeeecccc----------------------------cccccccCch----HHHHHH--------------hhhhccC
Q 023563 122 LDSIVTHDGVK----------------------------LPCCALTTLS----SFRQKF--------------GSDAYDQ 155 (280)
Q Consensus 122 ~~~v~~~~~~~----------------------------~~~~~~~~l~----~~~~~~--------------a~aL~~~ 155 (280)
+++++++.... ...+...++. +..++. +++++.+
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 22333221100 0001111221 111111 6789999
Q ss_pred CCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 156 VDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 156 p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
|++||||||++. ..+.+.|.++. + |+|+|++||+++++.+ +||++++|++ +++..|+++++
T Consensus 161 p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 161 PKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQQGKR----------VADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHh----------hCcEEEEEECCEEEEECCHHHH
Confidence 999999999654 35778888875 3 8999999999999876 9999999999 99989988877
Q ss_pred e
Q 023563 229 T 229 (280)
Q Consensus 229 ~ 229 (280)
.
T Consensus 229 ~ 229 (246)
T PRK14269 229 F 229 (246)
T ss_pred H
Confidence 5
No 202
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.2e-26 Score=200.18 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=110.0
Q ss_pred cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---hCCeeEEEecCC--ccccccc
Q 023563 52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---QKGRNVAVIKSN--KDTRYGL 122 (280)
Q Consensus 52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~~g~~i~~~~~~--~~~~~~~ 122 (280)
+|+++|+++.|++ +.+|+++||+|++|++++|+||||||||||+ ++|+|+. .....+.+-... ...+..+
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i 81 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLL-DVLAGRKTAGVITGEILINGRPLDKNFQRST 81 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCcCCCcceEEEECCEehHHHhhhce
Confidence 6899999999974 6799999999999999999999999999999 9999963 233333322211 1112233
Q ss_pred ceeeeecccccccccccC---------chHH-HHH--HhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCE
Q 023563 123 DSIVTHDGVKLPCCALTT---------LSSF-RQK--FGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKT 184 (280)
Q Consensus 123 ~~v~~~~~~~~~~~~~~~---------l~~~-~~~--~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~t 184 (280)
.++++............+ ++.= ..+ .+++++.+|++||||||++. ..+++.|++++++ |+|
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~-~~t 160 (192)
T cd03232 82 GYVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS-GQA 160 (192)
T ss_pred EEecccCccccCCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHc-CCE
Confidence 444443222111111111 1111 111 27899999999999999654 4588888888765 999
Q ss_pred EEEEEechhH-hhhccCCccccccccceEEEeec--eecc
Q 023563 185 VIVAGLDGDY-LRRSFGSVIDIIPLADSVTKLTA--RCEF 221 (280)
Q Consensus 185 viivtHdl~~-~~~~~~~~~~ll~~aD~i~~L~~--~i~~ 221 (280)
+|++||++++ +.+ +||++++|++ ++++
T Consensus 161 iiivtH~~~~~~~~----------~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 161 ILCTIHQPSASIFE----------KFDRLLLLKRGGKTVY 190 (192)
T ss_pred EEEEEcCChHHHHh----------hCCEEEEEcCCCeEEe
Confidence 9999999984 554 8999999975 5544
No 203
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.94 E-value=6.7e-27 Score=228.70 Aligned_cols=165 Identities=13% Similarity=0.094 Sum_probs=118.3
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---CeeEEEecCCcc-------cccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---GRNVAVIKSNKD-------TRYG 121 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---g~~i~~~~~~~~-------~~~~ 121 (280)
+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+... ...+.+...... .+..
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl-~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLM-KILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 48999999999988899999999999999999999999999999 999998542 333332211100 0122
Q ss_pred cceeeeeccccc-------------------------------ccccccCchHHH-HH--------------HhhhhccC
Q 023563 122 LDSIVTHDGVKL-------------------------------PCCALTTLSSFR-QK--------------FGSDAYDQ 155 (280)
Q Consensus 122 ~~~v~~~~~~~~-------------------------------~~~~~~~l~~~~-~~--------------~a~aL~~~ 155 (280)
+++++|...... ..+...++.... ++ .|++|+.+
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~ 159 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhC
Confidence 333433211000 001111111110 01 16789999
Q ss_pred CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
|++||||||++.. .++++|++++++ |+|||++|||++++.+ +||+|++|++ +++..|+++++
T Consensus 160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiitHd~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 160 ARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKA----------VCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCcHHHHHH----------hCCEEEEEeCCeEeeecCcccC
Confidence 9999999997654 588889988765 9999999999999986 9999999999 98888887655
No 204
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.94 E-value=3.7e-27 Score=232.11 Aligned_cols=169 Identities=12% Similarity=0.094 Sum_probs=121.3
Q ss_pred CccEEEcCceEEeC-----------CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc--
Q 023563 50 HSMVSPRPPLFSLQ-----------NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK-- 116 (280)
Q Consensus 50 ~~~l~~~~ls~~y~-----------~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~-- 116 (280)
.++|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+......|.+-....
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-k~l~Gl~~~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTG-LALLRLINSQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHH-HHHhCcCCCCcEEEECCEEccc
Confidence 46899999999995 36799999999999999999999999999999 99999743222222111000
Q ss_pred -------ccccccceeeeecc--cc-----------------------------cccccccCch-HHHHHH---------
Q 023563 117 -------DTRYGLDSIVTHDG--VK-----------------------------LPCCALTTLS-SFRQKF--------- 148 (280)
Q Consensus 117 -------~~~~~~~~v~~~~~--~~-----------------------------~~~~~~~~l~-~~~~~~--------- 148 (280)
..+..+++++|... .. ...+...++. ...++.
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR 431 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence 00112333333210 00 0001112232 122211
Q ss_pred -----hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 149 -----GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 149 -----a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
|++|+.+|++||||||++.+ .++++|++++++.|.|||++|||++++.+ +||++++|++
T Consensus 432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~----------~~d~i~~l~~ 501 (529)
T PRK15134 432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRA----------LCHQVIVLRQ 501 (529)
T ss_pred HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHH----------hcCeEEEEEC
Confidence 57899999999999997654 58889999887568999999999999986 9999999999
Q ss_pred -eeccccCcceee
Q 023563 218 -RCEFCGKRAFFT 229 (280)
Q Consensus 218 -~i~~~g~~~~~~ 229 (280)
++++.|+++++.
T Consensus 502 G~i~~~~~~~~~~ 514 (529)
T PRK15134 502 GEVVEQGDCERVF 514 (529)
T ss_pred CEEEEEcCHHHHh
Confidence 999999988876
No 205
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.9e-27 Score=208.35 Aligned_cols=165 Identities=12% Similarity=0.089 Sum_probs=116.2
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------c
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK--------D 117 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~--------~ 117 (280)
+|+++||++.|+++.+++|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-.... .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFL-RTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 58999999999888899999999999999999999999999999 99999632 123332221110 0
Q ss_pred cccccceeeeecccc---------cc------------------cccccCch----HHHHHH--------------hhhh
Q 023563 118 TRYGLDSIVTHDGVK---------LP------------------CCALTTLS----SFRQKF--------------GSDA 152 (280)
Q Consensus 118 ~~~~~~~v~~~~~~~---------~~------------------~~~~~~l~----~~~~~~--------------a~aL 152 (280)
.+..++++++..... .. .+...++. ...++. +++|
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 112233333321100 00 00001110 111111 5789
Q ss_pred ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563 153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR 225 (280)
Q Consensus 153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~ 225 (280)
+.+|++||||||++.. .+++.|+++. + +.|||++|||++++.+ +||++++|++ +++..|++
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~----------~~d~v~~l~~G~i~~~~~~ 229 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQQASR----------ISDKTAFFLNGEIVEFGDT 229 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHh----------hCCEEEEEECCEEEEeCCH
Confidence 9999999999996654 4778888884 3 7899999999998876 9999999999 99888888
Q ss_pred ceee
Q 023563 226 AFFT 229 (280)
Q Consensus 226 ~~~~ 229 (280)
+++.
T Consensus 230 ~~~~ 233 (250)
T PRK14240 230 VDLF 233 (250)
T ss_pred HHHH
Confidence 7765
No 206
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.8e-27 Score=210.52 Aligned_cols=166 Identities=12% Similarity=0.072 Sum_probs=117.7
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCc--------
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNK-------- 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~-------- 116 (280)
++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+... ...+.+.....
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-k~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFI-KTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 479999999999988899999999999999999999999999999 999997431 23333221110
Q ss_pred ccccccceeeeeccccc---------------------------ccccccCc----hHHHHHH--------------hhh
Q 023563 117 DTRYGLDSIVTHDGVKL---------------------------PCCALTTL----SSFRQKF--------------GSD 151 (280)
Q Consensus 117 ~~~~~~~~v~~~~~~~~---------------------------~~~~~~~l----~~~~~~~--------------a~a 151 (280)
..+..++++++...... ..+...++ .+..++. |++
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 11122334433211100 00000111 1111111 678
Q ss_pred hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee-----c-ee
Q 023563 152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT-----A-RC 219 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~-----~-~i 219 (280)
|+.+|++||||||++.. .+++.|+++++ ++|||++||+++++.+ +||++++|+ + ++
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i~~----------~~d~i~~l~~~~~~~G~i 232 (259)
T PRK14260 165 LAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQQATR----------VSDFTAFFSTDESRIGQM 232 (259)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH----------hcCeEEEEeccCCCCceE
Confidence 99999999999997654 47888888864 6899999999999986 999999997 5 88
Q ss_pred ccccCcceee
Q 023563 220 EFCGKRAFFT 229 (280)
Q Consensus 220 ~~~g~~~~~~ 229 (280)
+..|+++++.
T Consensus 233 ~~~~~~~~~~ 242 (259)
T PRK14260 233 VEFGVTTQIF 242 (259)
T ss_pred EEeCCHHHHh
Confidence 8889988876
No 207
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.2e-27 Score=210.70 Aligned_cols=166 Identities=14% Similarity=0.080 Sum_probs=117.2
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK-------- 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~-------- 116 (280)
++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.....
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTIL-RCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHH-HHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 489999999999988999999999999999999999999999999 99998742 223332211100
Q ss_pred ccccccceeeeeccccc---------c----------------cccccCch----HHHHH--------------Hhhhhc
Q 023563 117 DTRYGLDSIVTHDGVKL---------P----------------CCALTTLS----SFRQK--------------FGSDAY 153 (280)
Q Consensus 117 ~~~~~~~~v~~~~~~~~---------~----------------~~~~~~l~----~~~~~--------------~a~aL~ 153 (280)
..+..++++++...... . .+...++. ...++ .+++|+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~ 167 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA 167 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 01122333333211000 0 00001111 01111 167899
Q ss_pred cCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee---------c-
Q 023563 154 DQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT---------A- 217 (280)
Q Consensus 154 ~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~---------~- 217 (280)
.+|++||||||++. ..++++|.++.+ +.|||++||+++++.+ +||++++|+ +
T Consensus 168 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~----------~~d~v~~l~~~~~~~~~~~g 235 (264)
T PRK14243 168 VQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAAR----------VSDMTAFFNVELTEGGGRYG 235 (264)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHH----------hCCEEEEEecccccccccCc
Confidence 99999999999664 457888888865 5899999999999987 999999998 6
Q ss_pred eeccccCcceee
Q 023563 218 RCEFCGKRAFFT 229 (280)
Q Consensus 218 ~i~~~g~~~~~~ 229 (280)
+++..|+++++.
T Consensus 236 ~i~~~~~~~~~~ 247 (264)
T PRK14243 236 YLVEFDRTEKIF 247 (264)
T ss_pred eEEEeCCHHHHH
Confidence 888888888876
No 208
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-26 Score=211.45 Aligned_cols=167 Identities=17% Similarity=0.159 Sum_probs=118.3
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCC-------c
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSN-------K 116 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~-------~ 116 (280)
.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|.|+.. ....+.+-... .
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFL-RTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 4589999999999999999999999999999999999999999999 99999743 12222221100 0
Q ss_pred ccccccceeeeecccc---------c------------------ccccccCchH----HHHH--------------Hhhh
Q 023563 117 DTRYGLDSIVTHDGVK---------L------------------PCCALTTLSS----FRQK--------------FGSD 151 (280)
Q Consensus 117 ~~~~~~~~v~~~~~~~---------~------------------~~~~~~~l~~----~~~~--------------~a~a 151 (280)
..+..+.++++..... . ..+...++.. ...+ .|++
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAra 177 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLART 177 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 0111222333211100 0 0001112211 1111 1678
Q ss_pred hccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 152 AYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
|+.+|++||||||++. ..+.+.|+++++ +.|||++||+++++.+ +||++++|++ +++..|+
T Consensus 178 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~----------~~dri~~l~~G~i~~~g~ 245 (276)
T PRK14271 178 LAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAAR----------ISDRAALFFDGRLVEEGP 245 (276)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCC
Confidence 9999999999999654 457788888864 5899999999999876 9999999999 9999999
Q ss_pred cceee
Q 023563 225 RAFFT 229 (280)
Q Consensus 225 ~~~~~ 229 (280)
++++.
T Consensus 246 ~~~~~ 250 (276)
T PRK14271 246 TEQLF 250 (276)
T ss_pred HHHHH
Confidence 88876
No 209
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.8e-27 Score=229.93 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=113.7
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------cccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGL 122 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~ 122 (280)
|+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-.... ..+..+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLL-KILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 489999999999988899999999999999999999999999999 99999842 222222111100 011223
Q ss_pred ceeeeecccccc------------------------------cccccCchHHHH------------H--HhhhhccCCCE
Q 023563 123 DSIVTHDGVKLP------------------------------CCALTTLSSFRQ------------K--FGSDAYDQVDV 158 (280)
Q Consensus 123 ~~v~~~~~~~~~------------------------------~~~~~~l~~~~~------------~--~a~aL~~~p~l 158 (280)
++++|....... .+...++....+ + +|++|+.+|++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV 161 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence 333332111000 000011110000 0 16789999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
||||||++.+ .++++|++++++ |.|||++|||++++.+ +||++++|++ +++..++
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiiitHd~~~~~~----------~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 162 IAFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFA----------LCDAITVFKDGRYVATFD 223 (501)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEeecC
Confidence 9999997654 588888888765 9999999999999986 9999999999 8776554
No 210
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.1e-26 Score=210.82 Aligned_cols=167 Identities=11% Similarity=0.081 Sum_probs=118.1
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------- 116 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------- 116 (280)
.++|+++|++++|+++.+|+|+||+|++||+++|+|+||||||||+ ++|+|+.. ....+.+-....
T Consensus 22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYI-KTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred ceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 3489999999999988899999999999999999999999999999 99999742 223332211100
Q ss_pred -ccccccceeeeeccccc--------------cc-------------cccc----CchHHHHHH--------------hh
Q 023563 117 -DTRYGLDSIVTHDGVKL--------------PC-------------CALT----TLSSFRQKF--------------GS 150 (280)
Q Consensus 117 -~~~~~~~~v~~~~~~~~--------------~~-------------~~~~----~l~~~~~~~--------------a~ 150 (280)
..+..++++++...... .. +... ++.+...+. ++
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lar 180 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIAR 180 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHH
Confidence 01122333333211000 00 0000 011111111 56
Q ss_pred hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
+|+.+|++||||||++.. .+.++|+++.+ +.|||++|||++++.+ +||++++|++ +++..|
T Consensus 181 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~----------~~d~i~~l~~G~i~~~g 248 (271)
T PRK14238 181 CLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQQAAR----------ISDKTAFFLNGYVNEYD 248 (271)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHH----------hCCEEEEEECCEEEEeC
Confidence 899999999999996654 57888888864 7899999999999876 9999999999 998889
Q ss_pred Ccceee
Q 023563 224 KRAFFT 229 (280)
Q Consensus 224 ~~~~~~ 229 (280)
+++++.
T Consensus 249 ~~~~~~ 254 (271)
T PRK14238 249 DTDKIF 254 (271)
T ss_pred CHHHHH
Confidence 888876
No 211
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.1e-26 Score=203.24 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=106.4
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc----------ccccc
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK----------DTRYG 121 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~----------~~~~~ 121 (280)
+++ ||+|+|+++.+ |+||+|++ |+++|+||||||||||+ ++|+|+.. ....+.+-.... ..+..
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLL-RCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 455 89999999876 99999999 99999999999999999 99999732 222222111100 01122
Q ss_pred cceeeeecccccc-------------------------cccccCchHHHHHH--------------hhhhccCCCEEEEe
Q 023563 122 LDSIVTHDGVKLP-------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIGID 162 (280)
Q Consensus 122 ~~~v~~~~~~~~~-------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLD 162 (280)
++++++....... .+...++....++. +++++.+|++||||
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 156 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLD 156 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 3333332111100 01111121111111 56899999999999
Q ss_pred CcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 163 EAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 163 EP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
||++.. .+.++|++++++.|+|||++|||++++.+ +||++++|++ +++..|
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 157 EPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEY----------LADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHH----------hcCEEEEEECCEEEecC
Confidence 997654 57888888877558999999999999876 9999999998 776543
No 212
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.2e-27 Score=229.74 Aligned_cols=162 Identities=14% Similarity=0.099 Sum_probs=113.3
Q ss_pred EcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------ccccccceee
Q 023563 55 PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGLDSIV 126 (280)
Q Consensus 55 ~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~~~v~ 126 (280)
++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+..... ..+..+++++
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLL-KCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 47899999988999999999999999999999999999999 99999832 222222111100 0011222333
Q ss_pred eeccccc------------------------------ccccccCchHHHHH--------------HhhhhccCCCEEEEe
Q 023563 127 THDGVKL------------------------------PCCALTTLSSFRQK--------------FGSDAYDQVDVIGID 162 (280)
Q Consensus 127 ~~~~~~~------------------------------~~~~~~~l~~~~~~--------------~a~aL~~~p~lLlLD 162 (280)
|...... ..+...++....++ .|++|+.+|++||||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD 159 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 2111000 00001111111111 167899999999999
Q ss_pred CcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 163 EAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 163 EP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
||++.. .++++|++++++ |.|||++|||++++.+ +||++++|++ +++..|+++++
T Consensus 160 EPt~~LD~~~~~~l~~~l~~l~~~-g~tvii~tH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 160 EPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQ----------LCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHH----------hCCEEEEEECCEEEeecChhhC
Confidence 997654 578888888765 9999999999999986 9999999999 99988887765
No 213
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=2.9e-27 Score=211.09 Aligned_cols=167 Identities=14% Similarity=0.068 Sum_probs=124.4
Q ss_pred ccEEEcCceEEeCC---------eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCccccc
Q 023563 51 SMVSPRPPLFSLQN---------RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDTRY 120 (280)
Q Consensus 51 ~~l~~~~ls~~y~~---------~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~~~ 120 (280)
++++++|+++.|.. ..+++||||+|++||++||+|.||||||||. +++.|+.. .+..|.+-..+... .
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlg-r~i~~L~~pt~G~i~f~g~~i~~-~ 80 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLG-RLILGLEEPTSGEILFEGKDITK-L 80 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHH-HHHHcCcCCCCceEEEcCcchhh-c
Confidence 58999999999942 3799999999999999999999999999999 99999854 44444433322110 0
Q ss_pred ccceeeeecccccccccccCc-------------hHHHHHH--hhhhccCCCEEEEeCcccHH------HHHHHHHHHHh
Q 023563 121 GLDSIVTHDGVKLPCCALTTL-------------SSFRQKF--GSDAYDQVDVIGIDEAQFFE------DLYDFCREAAD 179 (280)
Q Consensus 121 ~~~~v~~~~~~~~~~~~~~~l-------------~~~~~~~--a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~ 179 (280)
.. ........+.+..+++ ...++++ ||||+.+|+++++|||++.+ +++++++++.+
T Consensus 81 ~~---~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~ 157 (268)
T COG4608 81 SK---EERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE 157 (268)
T ss_pred ch---hHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH
Confidence 00 0000001111111111 1222222 78999999999999997654 58899999999
Q ss_pred hcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563 180 HDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK 232 (280)
Q Consensus 180 ~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~ 232 (280)
+.|.|.+++|||+..+.. +||||.+|.. +++..|+.++++..+
T Consensus 158 ~~~lt~lFIsHDL~vv~~----------isdri~VMy~G~iVE~g~~~~~~~~p 201 (268)
T COG4608 158 ELGLTYLFISHDLSVVRY----------ISDRIAVMYLGKIVEIGPTEEVFSNP 201 (268)
T ss_pred HhCCeEEEEEEEHHhhhh----------hcccEEEEecCceeEecCHHHHhhCC
Confidence 999999999999999997 9999999999 999999999988543
No 214
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.5e-26 Score=211.49 Aligned_cols=168 Identities=16% Similarity=0.132 Sum_probs=117.5
Q ss_pred CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCC-------
Q 023563 49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSN------- 115 (280)
Q Consensus 49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~------- 115 (280)
..++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-...
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFL-RCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35689999999999988999999999999999999999999999999 99999842 23333221110
Q ss_pred -cccccccceeeeeccccc-------------------------ccccccCch----HHHHHH--------------hhh
Q 023563 116 -KDTRYGLDSIVTHDGVKL-------------------------PCCALTTLS----SFRQKF--------------GSD 151 (280)
Q Consensus 116 -~~~~~~~~~v~~~~~~~~-------------------------~~~~~~~l~----~~~~~~--------------a~a 151 (280)
...+..+.+++|...... ..+...++. ...++. +++
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAra 194 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARA 194 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 011122333333211000 001111111 111111 578
Q ss_pred hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEE-Eeec-eecccc
Q 023563 152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVT-KLTA-RCEFCG 223 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~-~L~~-~i~~~g 223 (280)
|+.+|++||||||++.+ .++++|+++++ +.|||++|||++++.+ +||+++ +|++ +++..|
T Consensus 195 L~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~----------~~dri~v~l~~G~i~~~g 262 (285)
T PRK14254 195 IAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQAAR----------ISDKTAVFLTGGELVEFD 262 (285)
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHh----------hcCEEEEEeeCCEEEEeC
Confidence 99999999999997654 47888888875 4799999999999886 999975 5788 888888
Q ss_pred Ccceee
Q 023563 224 KRAFFT 229 (280)
Q Consensus 224 ~~~~~~ 229 (280)
+++++.
T Consensus 263 ~~~~~~ 268 (285)
T PRK14254 263 DTDKIF 268 (285)
T ss_pred CHHHHH
Confidence 887765
No 215
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.3e-26 Score=209.29 Aligned_cols=166 Identities=10% Similarity=0.082 Sum_probs=117.7
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK-------- 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~-------- 116 (280)
++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-....
T Consensus 15 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFL-RCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred ceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 479999999999988999999999999999999999999999999 99999742 122333221110
Q ss_pred --ccccccceeeeeccccc---------------------------ccccccCc----hHHHHH--------------Hh
Q 023563 117 --DTRYGLDSIVTHDGVKL---------------------------PCCALTTL----SSFRQK--------------FG 149 (280)
Q Consensus 117 --~~~~~~~~v~~~~~~~~---------------------------~~~~~~~l----~~~~~~--------------~a 149 (280)
..+..++++++...... ..+...++ .....+ .+
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 173 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIA 173 (265)
T ss_pred HHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHH
Confidence 11222333333211000 00001111 011111 15
Q ss_pred hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
++|+.+|++||||||++.. .+.+.|+++++ +.|||++||+++++.+ +||++++|++ +++..
T Consensus 174 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~----------~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 174 RALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQQAAR----------VSDYTAYMYMGELIEF 241 (265)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEe
Confidence 7899999999999997544 57888888864 6899999999999976 9999999999 99888
Q ss_pred cCcceee
Q 023563 223 GKRAFFT 229 (280)
Q Consensus 223 g~~~~~~ 229 (280)
|+++++.
T Consensus 242 g~~~~~~ 248 (265)
T PRK14252 242 GATDTIF 248 (265)
T ss_pred CCHHHHH
Confidence 8887765
No 216
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.3e-26 Score=207.52 Aligned_cols=164 Identities=12% Similarity=0.054 Sum_probs=116.1
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------cc
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK--------DT 118 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~--------~~ 118 (280)
-+++|++++|+++.+|+|+||+|.+||+++|+||||||||||+ ++|+|+.. ....+.+..... ..
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFL-RCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 4689999999988999999999999999999999999999999 99999742 133333211110 01
Q ss_pred ccccceeeeeccccc----------------------------ccccccCchH----HHHH--------------Hhhhh
Q 023563 119 RYGLDSIVTHDGVKL----------------------------PCCALTTLSS----FRQK--------------FGSDA 152 (280)
Q Consensus 119 ~~~~~~v~~~~~~~~----------------------------~~~~~~~l~~----~~~~--------------~a~aL 152 (280)
+..++++++...... ..+...++.. ...+ .++++
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 164 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI 164 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence 122333333211000 0011112211 1111 15789
Q ss_pred ccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563 153 YDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR 225 (280)
Q Consensus 153 ~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~ 225 (280)
+.+|++||||||++.+ .+++.|+++. + |+|||++|||++++.+ +||++++|++ +++..|++
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~----------~~d~i~~l~~G~i~~~~~~ 232 (251)
T PRK14244 165 AVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKK----------VSDRVAFFQSGRIVEYNTT 232 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHh----------hcCEEEEEECCEEEEeCCH
Confidence 9999999999997644 4788888874 3 8999999999999876 8999999999 99888888
Q ss_pred ceee
Q 023563 226 AFFT 229 (280)
Q Consensus 226 ~~~~ 229 (280)
+++.
T Consensus 233 ~~~~ 236 (251)
T PRK14244 233 QEIF 236 (251)
T ss_pred HHHh
Confidence 8776
No 217
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.94 E-value=9.9e-27 Score=228.61 Aligned_cols=169 Identities=16% Similarity=0.139 Sum_probs=120.7
Q ss_pred CccEEEcCceEEeC-----CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEe-cCC------c
Q 023563 50 HSMVSPRPPLFSLQ-----NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVI-KSN------K 116 (280)
Q Consensus 50 ~~~l~~~~ls~~y~-----~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~-~~~------~ 116 (280)
.++|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+- ... .
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl-~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLS-KIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEEecCCcccccccc
Confidence 45899999999994 25799999999999999999999999999999 99999842 23333321 100 0
Q ss_pred ------ccccccceeeeecccc--------------------------cccccccCchH-----HHHHH-----------
Q 023563 117 ------DTRYGLDSIVTHDGVK--------------------------LPCCALTTLSS-----FRQKF----------- 148 (280)
Q Consensus 117 ------~~~~~~~~v~~~~~~~--------------------------~~~~~~~~l~~-----~~~~~----------- 148 (280)
..+..+++++|..... ...+...++.. +.++.
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 0011233333321100 00111123321 22221
Q ss_pred ---hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-e
Q 023563 149 ---GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-R 218 (280)
Q Consensus 149 ---a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~ 218 (280)
|++|+.+|++||||||++.+ .++++|++++++.|.|||++|||++++.+ +||++++|++ +
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~----------~~d~i~~l~~G~ 505 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLD----------VCDRAALMRDGK 505 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHH----------hCCEEEEEECCE
Confidence 67899999999999997654 48888888877669999999999999986 9999999999 8
Q ss_pred eccccCcceee
Q 023563 219 CEFCGKRAFFT 229 (280)
Q Consensus 219 i~~~g~~~~~~ 229 (280)
+++.|+++++.
T Consensus 506 i~~~g~~~~~~ 516 (520)
T TIGR03269 506 IVKIGDPEEIV 516 (520)
T ss_pred EEEECCHHHHH
Confidence 88888887664
No 218
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.94 E-value=1.3e-26 Score=201.59 Aligned_cols=152 Identities=20% Similarity=0.145 Sum_probs=104.0
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----ccccccccee
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLDSI 125 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~~v 125 (280)
||+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-... ...+..+.++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLL-RILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence 58999999999998999999999999999999999999999999 99999732 22222111100 0011112222
Q ss_pred eeeccc------------------------ccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH
Q 023563 126 VTHDGV------------------------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF 167 (280)
Q Consensus 126 ~~~~~~------------------------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~ 167 (280)
+++... ....+...++..+.++. +++++.+|++||||||++.
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 159 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA 159 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 221100 00111122332222211 5789999999999999664
Q ss_pred H------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563 168 E------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL 215 (280)
Q Consensus 168 ~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L 215 (280)
. .++++|++++++ |.|||++|||++++.+ ..+|++++
T Consensus 160 LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~i~~----------~~~~~~~~ 202 (204)
T PRK13538 160 IDKQGVARLEALLAQHAEQ-GGMVILTTHQDLPVAS----------DKVRKLRL 202 (204)
T ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEecChhhhcc----------CCceEEec
Confidence 4 578888888765 8999999999999975 67788776
No 219
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.7e-26 Score=207.96 Aligned_cols=168 Identities=14% Similarity=0.155 Sum_probs=117.9
Q ss_pred CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CC-----eeEEEecCC------
Q 023563 49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KG-----RNVAVIKSN------ 115 (280)
Q Consensus 49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g-----~~i~~~~~~------ 115 (280)
..|+|+++|++++|+++.+|+|+||+|.+||+++|+||||||||||+ ++|+|+.. .| ..+.+...+
T Consensus 7 ~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 7 AEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLL-KVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 46799999999999999999999999999999999999999999999 99999843 11 111110000
Q ss_pred cccccccceeeeecccc----------------------------cccccccCch----HHHHH--------------Hh
Q 023563 116 KDTRYGLDSIVTHDGVK----------------------------LPCCALTTLS----SFRQK--------------FG 149 (280)
Q Consensus 116 ~~~~~~~~~v~~~~~~~----------------------------~~~~~~~~l~----~~~~~--------------~a 149 (280)
...+..+++++++.... ...+...++. +...+ .+
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 165 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIA 165 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHH
Confidence 00112222222211100 0000111221 01111 16
Q ss_pred hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
++++.+|++||||||+..+ .+.+.|.++++ +.|||++||+++++.+ +||++++|++ +++..
T Consensus 166 ral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~~~~~----------~~d~v~~l~~g~i~~~ 233 (257)
T PRK14246 166 RALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQQVAR----------VADYVAFLYNGELVEW 233 (257)
T ss_pred HHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCHHHHHH----------hCCEEEEEECCEEEEE
Confidence 7899999999999997644 47788888754 6899999999999976 9999999999 99999
Q ss_pred cCcceee
Q 023563 223 GKRAFFT 229 (280)
Q Consensus 223 g~~~~~~ 229 (280)
|+++++.
T Consensus 234 g~~~~~~ 240 (257)
T PRK14246 234 GSSNEIF 240 (257)
T ss_pred CCHHHHH
Confidence 9888776
No 220
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.94 E-value=1.6e-26 Score=200.68 Aligned_cols=148 Identities=19% Similarity=0.164 Sum_probs=101.4
Q ss_pred EcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-------c---ccccccc
Q 023563 55 PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-------K---DTRYGLD 123 (280)
Q Consensus 55 ~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-------~---~~~~~~~ 123 (280)
++|+++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+.... . ..+..++
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLL-NIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 47999999988999999999999999999999999999999 99999742 22222221111 0 0112233
Q ss_pred eeeeecccccc---------------------------cccccCchHHHHHH--------------hhhhccCCCEEEEe
Q 023563 124 SIVTHDGVKLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIGID 162 (280)
Q Consensus 124 ~v~~~~~~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLD 162 (280)
++++....... .+...++....++. +++|+.+|++||||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD 159 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD 159 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 33332111000 01111121111111 56899999999999
Q ss_pred CcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563 163 EAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL 215 (280)
Q Consensus 163 EP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L 215 (280)
||++.. .+.+.|+++.++ |.|+|++||+++.+. +||++++|
T Consensus 160 EPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~-----------~~d~i~~l 206 (206)
T TIGR03608 160 EPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPEVAK-----------QADRVIEL 206 (206)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHh-----------hcCEEEeC
Confidence 996544 588888888765 999999999999763 79999875
No 221
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.6e-26 Score=203.88 Aligned_cols=165 Identities=15% Similarity=0.111 Sum_probs=115.2
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc----ccccccceeee
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK----DTRYGLDSIVT 127 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~----~~~~~~~~v~~ 127 (280)
|+++|++++|+++ +|+|+||+|.+||+++|+||||||||||+ ++|+|+.. ....+.+..... ..+..+.++++
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl-~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLL-ETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 4689999999875 89999999999999999999999999999 99999732 222222111100 00112222322
Q ss_pred eccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCccc
Q 023563 128 HDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQF 166 (280)
Q Consensus 128 ~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~ 166 (280)
...... ..+...++..+.++. +++++.+|++|+||||++
T Consensus 79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 158 (235)
T cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFS 158 (235)
T ss_pred cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcc
Confidence 211100 001111222222111 568999999999999965
Q ss_pred H------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 167 F------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 167 ~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
. ..+++.|++++.+.|.|+|++||+++++.+ +||++++|++ +++..|+++++.
T Consensus 159 gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 159 ALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWA----------LADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEecCHHHHH
Confidence 4 457888888876559999999999999876 8999999999 988888887765
No 222
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=1e-26 Score=211.59 Aligned_cols=164 Identities=12% Similarity=0.041 Sum_probs=115.4
Q ss_pred EEEcCceEEe--CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCe-------------------eEEE
Q 023563 53 VSPRPPLFSL--QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGR-------------------NVAV 111 (280)
Q Consensus 53 l~~~~ls~~y--~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~-------------------~i~~ 111 (280)
|+++|++++| ++..+|+|+||+|++||+++|+||||||||||+ ++|.|+..... .+++
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl-~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLL-SAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 7899999999 457799999999999999999999999999999 99999743222 2344
Q ss_pred ecCCccccc-ccceee---e--ecccccccccccCchHHHHH-------------------------HhhhhccCCCEEE
Q 023563 112 IKSNKDTRY-GLDSIV---T--HDGVKLPCCALTTLSSFRQK-------------------------FGSDAYDQVDVIG 160 (280)
Q Consensus 112 ~~~~~~~~~-~~~~v~---~--~~~~~~~~~~~~~l~~~~~~-------------------------~a~aL~~~p~lLl 160 (280)
++|+..... .+...+ . ........+...++..+.++ .++|++.+|++||
T Consensus 82 v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ill 161 (275)
T cd03289 82 IPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL 161 (275)
T ss_pred ECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 444322100 000000 0 00000011112233332222 1678999999999
Q ss_pred EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563 161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL 230 (280)
Q Consensus 161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~ 230 (280)
||||++.. .+.+.|+++. + ++|||++||+++++. .||+|++|++ +++..|+|+++..
T Consensus 162 lDEpts~LD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~-----------~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 162 LDEPSAHLDPITYQVIRKTLKQAF-A-DCTVILSEHRIEAML-----------ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEECCHHHHH-----------hCCEEEEecCCeEeecCCHHHHhh
Confidence 99997654 3667777653 3 899999999999875 6999999999 9999999999873
No 223
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.94 E-value=2.3e-26 Score=204.46 Aligned_cols=152 Identities=20% Similarity=0.187 Sum_probs=102.4
Q ss_pred EEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cccccccceeeeeccccc
Q 023563 60 FSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLDSIVTHDGVKL 133 (280)
Q Consensus 60 ~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~~v~~~~~~~~ 133 (280)
+.|+.+.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.... ...+..+++++++.....
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTL-KILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 667778899999999999999999999999999999 99999732 22222111100 001111222221110000
Q ss_pred ----------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH---
Q 023563 134 ----------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE--- 168 (280)
Q Consensus 134 ----------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~--- 168 (280)
..+...++....++. +++|+.+|++||||||++..
T Consensus 108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 187 (236)
T cd03267 108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187 (236)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 001111222211111 56899999999999996644
Q ss_pred ---HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 169 ---DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 169 ---~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
.+.++|++++++.|.|||++||+++++.+ +||++++|++ ++++.
T Consensus 188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~----------~~d~i~~l~~G~i~~~ 235 (236)
T cd03267 188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEA----------LARRVLVIDKGRLLYD 235 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHH----------hCCEEEEEeCCEEEec
Confidence 58888888876558999999999999876 9999999998 77654
No 224
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=5.1e-26 Score=194.37 Aligned_cols=137 Identities=19% Similarity=0.086 Sum_probs=101.4
Q ss_pred cCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcccccccceeeeecccccc
Q 023563 56 RPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDTRYGLDSIVTHDGVKLP 134 (280)
Q Consensus 56 ~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~ 134 (280)
.|++++|+++.+++++ |+|++||+++|+||||||||||+ ++|+|+.. ....+.+-.. .+.++.+...
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~------~i~~~~q~~~---- 71 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAV-KILAGQLIPNGDNDEWDGI------TPVYKPQYID---- 71 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCCcEEEECCE------EEEEEcccCC----
Confidence 6899999999999985 99999999999999999999999 99999743 3333332110 1122222111
Q ss_pred cccccCchHHHHHHhhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccc
Q 023563 135 CCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPL 208 (280)
Q Consensus 135 ~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~ 208 (280)
+.+=...+-..|++++.+|+++|||||++.. .+.+.+.+++++.+.|||++|||++++.+ +
T Consensus 72 ---LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~----------~ 138 (177)
T cd03222 72 ---LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY----------L 138 (177)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH----------h
Confidence 1111112222378999999999999996644 47788888876534999999999999986 8
Q ss_pred cceEEEeec
Q 023563 209 ADSVTKLTA 217 (280)
Q Consensus 209 aD~i~~L~~ 217 (280)
||++++|++
T Consensus 139 ~d~i~~l~~ 147 (177)
T cd03222 139 SDRIHVFEG 147 (177)
T ss_pred CCEEEEEcC
Confidence 999999988
No 225
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=1.2e-26 Score=227.48 Aligned_cols=168 Identities=14% Similarity=0.065 Sum_probs=118.6
Q ss_pred CccEEEcCceEEeC---CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CCeeEEEecCCc-------c
Q 023563 50 HSMVSPRPPLFSLQ---NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVAVIKSNK-------D 117 (280)
Q Consensus 50 ~~~l~~~~ls~~y~---~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~~~~~~~-------~ 117 (280)
.++|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+..... .
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLl-k~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~ 335 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELV-QCLFGAYPGRWEGEIFIDGKPVKIRNPQQA 335 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHH-HHHhCCCCCCCCcEEEECCEECCCCCHHHH
Confidence 45899999999993 46799999999999999999999999999999 99999843 233332211100 0
Q ss_pred cccccceeeeecc---cc--------------------------------cccccccCch-HHHHHH-------------
Q 023563 118 TRYGLDSIVTHDG---VK--------------------------------LPCCALTTLS-SFRQKF------------- 148 (280)
Q Consensus 118 ~~~~~~~v~~~~~---~~--------------------------------~~~~~~~~l~-~~~~~~------------- 148 (280)
.+..+++++|... .. ...+...++. ...++.
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~ 415 (506)
T PRK13549 336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAV 415 (506)
T ss_pred HHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHH
Confidence 0112233332210 00 0001111121 111111
Q ss_pred -hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563 149 -GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE 220 (280)
Q Consensus 149 -a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~ 220 (280)
|++++.+|++||||||++.+ .++++|.+++++ |+|||++|||++++.+ +||++++|++ +++
T Consensus 416 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~----------~~d~v~~l~~G~i~ 484 (506)
T PRK13549 416 LAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLG----------LSDRVLVMHEGKLK 484 (506)
T ss_pred HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHH----------hCCEEEEEECCEEE
Confidence 56899999999999997654 478889988876 9999999999999986 9999999999 998
Q ss_pred cccCcceee
Q 023563 221 FCGKRAFFT 229 (280)
Q Consensus 221 ~~g~~~~~~ 229 (280)
+.|+++++.
T Consensus 485 ~~~~~~~~~ 493 (506)
T PRK13549 485 GDLINHNLT 493 (506)
T ss_pred EEeccccCC
Confidence 888887763
No 226
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=4.6e-27 Score=209.01 Aligned_cols=156 Identities=21% Similarity=0.205 Sum_probs=109.8
Q ss_pred eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCccc-----ccccceeeeec-ccc--ccc-
Q 023563 66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDT-----RYGLDSIVTHD-GVK--LPC- 135 (280)
Q Consensus 66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~-----~~~~~~v~~~~-~~~--~~~- 135 (280)
.+++||||+|++|+++|++|||||||||++ +++.|+.. .+..+....-.+.. ...++.++.+. ... .+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtL-KmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTL-KMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhH-HHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 589999999999999999999999999999 99999844 33333322211111 11122222111 000 000
Q ss_pred ------------------------ccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH------HHH
Q 023563 136 ------------------------CALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DLY 171 (280)
Q Consensus 136 ------------------------~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i~ 171 (280)
..+.++..+.+.. +.+|+++|++|+|||||..+ .++
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir 196 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence 1112222222211 45799999999999997654 488
Q ss_pred HHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563 172 DFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK 232 (280)
Q Consensus 172 ~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~ 232 (280)
+.+++..++++.||+++||+++.+.+ +||||++|+. +++++|+.+++..++
T Consensus 197 ~Flke~n~~~~aTVllTTH~~~di~~----------lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 197 EFLKEYNEERQATVLLTTHIFDDIAT----------LCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred HHHHHHHHhhCceEEEEecchhhHHH----------hhhheEEeeCCcEeecccHHHHHHHh
Confidence 99999999899999999999999887 9999999999 999999887776443
No 227
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.94 E-value=2e-26 Score=204.42 Aligned_cols=163 Identities=18% Similarity=0.188 Sum_probs=112.4
Q ss_pred EEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eEE
Q 023563 53 VSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NVA 110 (280)
Q Consensus 53 l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i~ 110 (280)
|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. +|. .++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLT-KLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 478999999963 5799999999999999999999999999999 99999732 121 244
Q ss_pred EecCCcccc-cccceeee--eccc----ccccccccCchHHHH-----------------------H--HhhhhccCCCE
Q 023563 111 VIKSNKDTR-YGLDSIVT--HDGV----KLPCCALTTLSSFRQ-----------------------K--FGSDAYDQVDV 158 (280)
Q Consensus 111 ~~~~~~~~~-~~~~~v~~--~~~~----~~~~~~~~~l~~~~~-----------------------~--~a~aL~~~p~l 158 (280)
+++|+.... ..+...+. .... ........++.++.+ + .+++++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 444432110 00000000 0000 000000011111111 1 16789999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||||++.. .+++.|++++ + |+|||++|||++++. .||++++|++ +++..|+++++.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-----------~~d~v~~l~~G~i~~~~~~~~~~ 224 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVK-----------NADRIIVMEKGRIVEQGSHDELL 224 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHH-----------hCCEEEEEECCEEEEEcCHHHHH
Confidence 9999997654 5788888885 4 899999999999884 6999999999 999888887765
No 228
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.94 E-value=7.3e-26 Score=187.02 Aligned_cols=135 Identities=21% Similarity=0.202 Sum_probs=99.9
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcccccccceeeeeccc
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDTRYGLDSIVTHDGV 131 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~~~~~~~v~~~~~~ 131 (280)
|+++|++++|++..+++++||++++||+++|+||||||||||+ ++|.|+.. ....+.+ .. ...+.++++
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~-~~----~~~i~~~~~---- 70 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLL-KLIAGELEPDEGIVTW-GS----TVKIGYFEQ---- 70 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHH-HHHcCCCCCCceEEEE-CC----eEEEEEEcc----
Confidence 4789999999888899999999999999999999999999999 99999853 2333332 11 112222222
Q ss_pred ccccccccCchHHHHHHhhhhccCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCcccc
Q 023563 132 KLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDI 205 (280)
Q Consensus 132 ~~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~l 205 (280)
+..=...+-..+++++.+|+++|+|||++..| +.+.++++ +.|++++||+++++.+
T Consensus 71 ------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~~-------- 132 (144)
T cd03221 71 ------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFLDQ-------- 132 (144)
T ss_pred ------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHH--------
Confidence 11111112223789999999999999976543 44555443 6799999999999976
Q ss_pred ccccceEEEeec
Q 023563 206 IPLADSVTKLTA 217 (280)
Q Consensus 206 l~~aD~i~~L~~ 217 (280)
+||++++|++
T Consensus 133 --~~d~v~~l~~ 142 (144)
T cd03221 133 --VATKIIELED 142 (144)
T ss_pred --hCCEEEEEeC
Confidence 8999999976
No 229
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.94 E-value=2e-26 Score=203.41 Aligned_cols=159 Identities=21% Similarity=0.150 Sum_probs=109.5
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-------ccc--cccc
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-------KDT--RYGL 122 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-------~~~--~~~~ 122 (280)
+.+++++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-... ... ...+
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv 101 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLL-RLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTG 101 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEchhhcccccCCCCCcH
Confidence 7899999999999999999999999999999999999999999 99999732 22222211100 000 0000
Q ss_pred ceeee---e-cc--------cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH------HH
Q 023563 123 DSIVT---H-DG--------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DL 170 (280)
Q Consensus 123 ~~v~~---~-~~--------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i 170 (280)
...+. . .. .....+...++....++. +++++.+|++||||||++.. .+
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~ 181 (224)
T cd03220 102 RENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKC 181 (224)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 00000 0 00 000011111222222111 67899999999999996654 47
Q ss_pred HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 171 YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 171 ~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
++.|++++++ |.|||++||+++++.+ +||++++|++ +++..|
T Consensus 182 ~~~l~~~~~~-~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 182 QRRLRELLKQ-GKTVILVSHDPSSIKR----------LCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEecC
Confidence 8888888776 8999999999999876 8999999998 776544
No 230
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.4e-26 Score=215.66 Aligned_cols=166 Identities=13% Similarity=0.146 Sum_probs=117.2
Q ss_pred ccEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc------
Q 023563 51 SMVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------ 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------ 116 (280)
.+|+++|++++|. ...+|+|+||+|++||++||+||||||||||+ ++|.|+.. ....+.+...+.
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl-~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFL-RNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhccccccCCCCCceEEEECCEEccccccc
Confidence 4899999999994 45799999999999999999999999999999 99999742 122222111110
Q ss_pred --ccccccceeeeecccc---------c------------------ccccccCc----hHHHHH--------------Hh
Q 023563 117 --DTRYGLDSIVTHDGVK---------L------------------PCCALTTL----SSFRQK--------------FG 149 (280)
Q Consensus 117 --~~~~~~~~v~~~~~~~---------~------------------~~~~~~~l----~~~~~~--------------~a 149 (280)
..+..+++++|..... + ..+...++ .....+ .|
T Consensus 158 ~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA 237 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA 237 (329)
T ss_pred hHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence 1122233333321100 0 00000111 001111 16
Q ss_pred hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
||++.+|++||||||++.. .+.+.|+++.+ ++|+|++||+++++.+ +||+|++|++ +++..
T Consensus 238 RAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~----------~~Driivl~~G~i~e~ 305 (329)
T PRK14257 238 RAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQR----------ISDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEe
Confidence 7899999999999997654 47788887764 6999999999999976 8999999999 99999
Q ss_pred cCcceee
Q 023563 223 GKRAFFT 229 (280)
Q Consensus 223 g~~~~~~ 229 (280)
|++.+++
T Consensus 306 g~~~~l~ 312 (329)
T PRK14257 306 GETKTIF 312 (329)
T ss_pred CCHHHHh
Confidence 9999987
No 231
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.94 E-value=6.4e-26 Score=198.32 Aligned_cols=159 Identities=13% Similarity=0.201 Sum_probs=108.3
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----cccccccceeee
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSIVT 127 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v~~ 127 (280)
++++|++++|++ +++|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-..+ ...+..++++++
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLL-NLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 478999999974 57899999999999999999999999999 99999732 11112111100 001111222222
Q ss_pred ecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCccc
Q 023563 128 HDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQF 166 (280)
Q Consensus 128 ~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~ 166 (280)
..... ...+...++.++.++. +++++.+|++||||||++
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 157 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFS 157 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 11100 0011112222222211 568999999999999966
Q ss_pred HH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 167 FE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 167 ~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
.. .++++|.++.++.|.|||++||+++++.+ +||++++|++ +++..|+
T Consensus 158 ~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~----------~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 158 ALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARA----------IASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh----------hcCeEEEEECCeEEEecC
Confidence 54 57888888876558999999999999876 8999999998 8876653
No 232
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.2e-26 Score=203.59 Aligned_cols=163 Identities=15% Similarity=0.144 Sum_probs=111.3
Q ss_pred EEEcCceEEeCCe--eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee-------------------EE
Q 023563 53 VSPRPPLFSLQNR--NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN-------------------VA 110 (280)
Q Consensus 53 l~~~~ls~~y~~~--~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~-------------------i~ 110 (280)
|+++|++++|+++ .+++++||+|++|++++|+||||||||||+ ++|+|+.. .... ++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLV-NLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999765 799999999999999999999999999999 99999832 2222 33
Q ss_pred EecCCcccc-cccceeee--eccc----ccccccccCchHHH-----------------------HH--HhhhhccCCCE
Q 023563 111 VIKSNKDTR-YGLDSIVT--HDGV----KLPCCALTTLSSFR-----------------------QK--FGSDAYDQVDV 158 (280)
Q Consensus 111 ~~~~~~~~~-~~~~~v~~--~~~~----~~~~~~~~~l~~~~-----------------------~~--~a~aL~~~p~l 158 (280)
+++|+.... ..+...+. .... ........++..+. .+ .+++|+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 333322110 00000000 0000 00000000111111 11 16789999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||||++.. .+.+.|+++. + +.|||++|||++++. .||++++|++ +++..|+++++.
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-----------~~d~v~~l~~G~i~~~~~~~~~~ 224 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLSTIE-----------NADRIVVLEDGKIVERGTHEELL 224 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHh-----------hCCEEEEecCCeEeeeCCHHHHH
Confidence 9999997654 4788888885 3 899999999999885 5999999999 888888887765
No 233
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.94 E-value=2.9e-26 Score=201.03 Aligned_cols=156 Identities=21% Similarity=0.247 Sum_probs=107.0
Q ss_pred EEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eEE
Q 023563 53 VSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NVA 110 (280)
Q Consensus 53 l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i~ 110 (280)
|+++|++++|++ +.+++|+||+|++|++++|+||||||||||+ ++|.|+.. .|. .++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLL-KLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 789999999975 5799999999999999999999999999999 99999732 121 234
Q ss_pred EecCCccccc-ccceeee---ec-c--cccccccccCchHHHHH-------------------------HhhhhccCCCE
Q 023563 111 VIKSNKDTRY-GLDSIVT---HD-G--VKLPCCALTTLSSFRQK-------------------------FGSDAYDQVDV 158 (280)
Q Consensus 111 ~~~~~~~~~~-~~~~v~~---~~-~--~~~~~~~~~~l~~~~~~-------------------------~a~aL~~~p~l 158 (280)
+++|...... .+...+. .. . .....+...++.++.++ .+++++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 4444322100 0000000 00 0 00011112233332221 16789999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
||||||++.+ .+++.|+++++ +.|||++|||++++ + +||++++|++ +++..
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~-~----------~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLL-D----------LVDRIIVMDSGRIVAD 219 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHH-H----------hCCEEEEEeCCeEeec
Confidence 9999997654 47788888765 48999999999986 4 8999999998 76543
No 234
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.6e-26 Score=203.18 Aligned_cols=165 Identities=11% Similarity=0.094 Sum_probs=116.9
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc--------c
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK--------D 117 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~--------~ 117 (280)
+|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+..... .
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFI-RTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 58999999999988899999999999999999999999999999 99998631 222332221110 0
Q ss_pred cccccceeeeeccccc---------c------------------cccccCch----HHHHHH--------------hhhh
Q 023563 118 TRYGLDSIVTHDGVKL---------P------------------CCALTTLS----SFRQKF--------------GSDA 152 (280)
Q Consensus 118 ~~~~~~~v~~~~~~~~---------~------------------~~~~~~l~----~~~~~~--------------a~aL 152 (280)
.+..+++++++..... . .+...++. ...++. ++++
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 1122333333211100 0 00011111 111111 5789
Q ss_pred ccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563 153 YDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR 225 (280)
Q Consensus 153 ~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~ 225 (280)
+.+|++||||||++. ..+.++|++++ + +.|||++||+++++.+ +||++++|++ +++..|++
T Consensus 162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~----------~~~~i~~l~~G~i~~~g~~ 229 (250)
T PRK14266 162 AVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATR----------VSKYTSFFLNGEIIESGLT 229 (250)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHh----------hcCEEEEEECCeEEEeCCH
Confidence 999999999999654 45788888885 3 7899999999999986 9999999999 99999998
Q ss_pred ceee
Q 023563 226 AFFT 229 (280)
Q Consensus 226 ~~~~ 229 (280)
+++.
T Consensus 230 ~~~~ 233 (250)
T PRK14266 230 DQIF 233 (250)
T ss_pred HHHH
Confidence 8875
No 235
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=9.7e-26 Score=196.07 Aligned_cols=160 Identities=18% Similarity=0.096 Sum_probs=109.5
Q ss_pred cEEEcCceEEeC----CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh----CCeeEEEecCCc-----cc
Q 023563 52 MVSPRPPLFSLQ----NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ----KGRNVAVIKSNK-----DT 118 (280)
Q Consensus 52 ~l~~~~ls~~y~----~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~----~g~~i~~~~~~~-----~~ 118 (280)
.+.++||+|.|+ ++.+|+++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+...+. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLL-KALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHH-HHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 588999999994 56899999999999999999999999999999 99999854 333443322111 11
Q ss_pred ccccceeeeecccccccccccC---------------ch-HHHH--HHhhhhccCCCEEEEeCcccH------HHHHHHH
Q 023563 119 RYGLDSIVTHDGVKLPCCALTT---------------LS-SFRQ--KFGSDAYDQVDVIGIDEAQFF------EDLYDFC 174 (280)
Q Consensus 119 ~~~~~~v~~~~~~~~~~~~~~~---------------l~-~~~~--~~a~aL~~~p~lLlLDEP~~~------~~i~~~l 174 (280)
+..+.++++............+ ++ .... ..|++|+.+|++||||||++. ..++++|
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l 161 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCI 161 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 2234445443221111110011 11 0011 127899999999999999654 4588889
Q ss_pred HHHHhhcCCEEEEE-EechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 175 REAADHDGKTVIVA-GLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 175 ~~l~~~~g~tviiv-tHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
++++++.+.|+|++ +|+.+++.+ +||++++|++ +++..
T Consensus 162 ~~~~~~~~~t~ii~~~h~~~~~~~----------~~d~i~~l~~G~i~~~ 201 (202)
T cd03233 162 RTMADVLKTTTFVSLYQASDEIYD----------LFDKVLVLYEGRQIYY 201 (202)
T ss_pred HHHHHhCCCEEEEEEcCCHHHHHH----------hCCeEEEEECCEEEec
Confidence 98876546776665 556677765 8999999999 77654
No 236
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.7e-26 Score=202.38 Aligned_cols=163 Identities=16% Similarity=0.132 Sum_probs=111.1
Q ss_pred EEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee-------------------EEE
Q 023563 53 VSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN-------------------VAV 111 (280)
Q Consensus 53 l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~-------------------i~~ 111 (280)
|+++|++++|++ +.+++|+||+|++|++++|+||||||||||+ ++|+|+.. .... ++|
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLI-NLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 789999999975 5799999999999999999999999999999 99999842 1122 333
Q ss_pred ecCCccccc-ccceeee--ecc----cccccccccCchHHHH-----------------------H--HhhhhccCCCEE
Q 023563 112 IKSNKDTRY-GLDSIVT--HDG----VKLPCCALTTLSSFRQ-----------------------K--FGSDAYDQVDVI 159 (280)
Q Consensus 112 ~~~~~~~~~-~~~~v~~--~~~----~~~~~~~~~~l~~~~~-----------------------~--~a~aL~~~p~lL 159 (280)
++|...... .+...+. ... .....+...++..+.+ + .+++|+.+|++|
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ll 161 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKIL 161 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 333321100 0000000 000 0000000111111111 1 167899999999
Q ss_pred EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||||++.+ .+++.|+++. + |+|||++||+++++. .||++++|++ +++..|+.+++.
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-----------~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 162 ILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIK-----------NADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHh-----------hCCEEEEEeCCeEEEeCCHHHHH
Confidence 999997654 4788888875 4 899999999999874 6999999999 888877776654
No 237
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.8e-26 Score=202.81 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=114.3
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC-eeEEEecCC-------cccccc
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG-RNVAVIKSN-------KDTRYG 121 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g-~~i~~~~~~-------~~~~~~ 121 (280)
.++|+++||+++|+++++|+|||++|++||.++|+||||||||||+ ++++|..... ..+..+... .+.|..
T Consensus 29 ~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL-~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 29 EPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLL-SLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred cceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHH-HHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 4689999999999999999999999999999999999999999999 9999974421 111111110 111222
Q ss_pred cceeee----------------------eccccc------------ccccccCchHHHHHH--------------hhhhc
Q 023563 122 LDSIVT----------------------HDGVKL------------PCCALTTLSSFRQKF--------------GSDAY 153 (280)
Q Consensus 122 ~~~v~~----------------------~~~~~~------------~~~~~~~l~~~~~~~--------------a~aL~ 153 (280)
++.+.. ..+... ..+...++.++.++. ||||+
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv 187 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALV 187 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHh
Confidence 221110 001110 001122333333332 78999
Q ss_pred cCCCEEEEeCcccHH------HHHHHHHHHHhh-cCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 154 DQVDVIGIDEAQFFE------DLYDFCREAADH-DGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~-~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
.+|++||||||+... .+.+.|.+++.. .+.++|+|||..+++.. ..++++.+++ +++..|.
T Consensus 188 ~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~----------~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPP----------CFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhccc----------ccceEEEeeCCceeeccc
Confidence 999999999996654 467777777653 37889999999998865 8899999999 8887663
No 238
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.93 E-value=5e-26 Score=199.97 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=105.9
Q ss_pred cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---------c
Q 023563 52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---------D 117 (280)
Q Consensus 52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---------~ 117 (280)
.|+++|+++.|++ +.+|+|+||++++|++++|+||||||||||+ ++|+|+.. ....+.+-.... .
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLL-TLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEhHhcCHhHHHH
Confidence 3789999999975 6799999999999999999999999999999 99999732 222221111000 0
Q ss_pred cccccceeeeecccc----------------------------cccccccCchHHHHHH--------------hhhhccC
Q 023563 118 TRYGLDSIVTHDGVK----------------------------LPCCALTTLSSFRQKF--------------GSDAYDQ 155 (280)
Q Consensus 118 ~~~~~~~v~~~~~~~----------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~ 155 (280)
.+..++++++..... ...+...++....++. +++++.+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~ 159 (220)
T TIGR02982 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHR 159 (220)
T ss_pred HHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 011222332211100 0001111222211111 5689999
Q ss_pred CCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee
Q 023563 156 VDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC 219 (280)
Q Consensus 156 p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i 219 (280)
|++||||||+.. ..++++|++++++.|+|||++||+++.. + +||++++|++ ++
T Consensus 160 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~----------~~d~v~~l~~g~~ 219 (220)
T TIGR02982 160 PKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-D----------VADRIVHMEDGKL 219 (220)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-h----------hCCEEEEEECCEE
Confidence 999999999654 4588889888765599999999999865 3 8999999987 53
No 239
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8.6e-26 Score=203.88 Aligned_cols=167 Identities=14% Similarity=0.074 Sum_probs=118.5
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK------- 116 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~------- 116 (280)
.+.+.+++++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVL-RSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHcccccccCCCCceEEEECCEeccccccch
Confidence 3479999999999999999999999999999999999999999999 99999752 233333322111
Q ss_pred -ccccccceeeeeccccc-------------------------ccccccCchH----HHHH--------------Hhhhh
Q 023563 117 -DTRYGLDSIVTHDGVKL-------------------------PCCALTTLSS----FRQK--------------FGSDA 152 (280)
Q Consensus 117 -~~~~~~~~v~~~~~~~~-------------------------~~~~~~~l~~----~~~~--------------~a~aL 152 (280)
..+..++++++...... ..+...++.. ..++ .|+||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral 164 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAI 164 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 11222333333211100 0011111110 0000 05789
Q ss_pred ccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee--------c-
Q 023563 153 YDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT--------A- 217 (280)
Q Consensus 153 ~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~--------~- 217 (280)
+.+|++||||||++. ..++++|+++. + +.|+|++||+++++.+ +||++++|+ +
T Consensus 165 ~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~----------~~d~v~~l~~~~~~~~~~G 232 (261)
T PRK14263 165 ATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQQAIR----------VADTTAFFSVDISQGTRTG 232 (261)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHH----------hCCEEEEEecccccccCCc
Confidence 999999999999664 45888888885 3 7899999999999876 999999995 5
Q ss_pred eeccccCcceee
Q 023563 218 RCEFCGKRAFFT 229 (280)
Q Consensus 218 ~i~~~g~~~~~~ 229 (280)
+++..|+++++.
T Consensus 233 ~i~~~g~~~~~~ 244 (261)
T PRK14263 233 YLVEMGPTAQIF 244 (261)
T ss_pred eEEEeCCHHHHH
Confidence 888889888876
No 240
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=4e-26 Score=194.59 Aligned_cols=158 Identities=22% Similarity=0.241 Sum_probs=114.1
Q ss_pred ccEEEcCceEEeCCee--eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCccccc
Q 023563 51 SMVSPRPPLFSLQNRN--LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRY 120 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~--vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~ 120 (280)
+++.+++++.+|+++. +|+|+|++|.+||.++++||||||||||+ ++++|+.. +++.+. .|. ...
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLL-nl~AGf~~P~~G~i~l~~r~i~--gPg--aer 76 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLL-NLIAGFVTPSRGSIQLNGRRIE--GPG--AER 76 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHH-HHHhcCcCcccceEEECCEecc--CCC--ccc
Confidence 3688999999998876 99999999999999999999999999999 99999832 222221 000 011
Q ss_pred ccceeeeeccccccc----------------------------ccccCchHHHHHH--------------hhhhccCCCE
Q 023563 121 GLDSIVTHDGVKLPC----------------------------CALTTLSSFRQKF--------------GSDAYDQVDV 158 (280)
Q Consensus 121 ~~~~v~~~~~~~~~~----------------------------~~~~~l~~~~~~~--------------a~aL~~~p~l 158 (280)
+-+||.+. +.++ +..+++.++.+++ ||||+.+|++
T Consensus 77 --gvVFQ~~~-LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~ 153 (259)
T COG4525 77 --GVVFQNEA-LLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL 153 (259)
T ss_pred --eeEeccCc-cchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce
Confidence 12333222 2222 1122222222222 6899999999
Q ss_pred EEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec---eeccccCcc
Q 023563 159 IGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA---RCEFCGKRA 226 (280)
Q Consensus 159 LlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~---~i~~~g~~~ 226 (280)
|+||||... +.+.++|.+++++.|+.+++||||++++.= +++++++|+. +++..-+++
T Consensus 154 LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlf----------latrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 154 LLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALF----------LATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred EeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHh----------hhheeEEecCCCceeeEecCCC
Confidence 999999544 457888889998889999999999999964 8999999985 666554443
No 241
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.93 E-value=8.6e-26 Score=198.73 Aligned_cols=153 Identities=17% Similarity=0.135 Sum_probs=105.1
Q ss_pred cEEEcCceEEeCC-------eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Cc---
Q 023563 52 MVSPRPPLFSLQN-------RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NK--- 116 (280)
Q Consensus 52 ~l~~~~ls~~y~~-------~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~--- 116 (280)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-.. +.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~~~g~~~~~~~~ 79 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLL-KSLYANYLPDSGRILVRHEGAWVDLAQA 79 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCeEEEecCCCccchhhc
Confidence 5899999999962 4799999999999999999999999999999 99999842 2333333210 00
Q ss_pred --c-----cccccceeeeeccccc---------------------------ccccccCchH-HHHHH-------------
Q 023563 117 --D-----TRYGLDSIVTHDGVKL---------------------------PCCALTTLSS-FRQKF------------- 148 (280)
Q Consensus 117 --~-----~~~~~~~v~~~~~~~~---------------------------~~~~~~~l~~-~~~~~------------- 148 (280)
. .+..++++++...... ..+...++.. +.++.
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~ 159 (224)
T TIGR02324 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVN 159 (224)
T ss_pred CHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHH
Confidence 0 0112333333211100 0011112211 11111
Q ss_pred -hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563 149 -GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT 216 (280)
Q Consensus 149 -a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~ 216 (280)
+++|+.+|++||||||++.. .+.+.|++++++ |.|||++||+++++.+ +||+++.+.
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vsH~~~~~~~----------~~d~i~~~~ 223 (224)
T TIGR02324 160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR-GAALIGIFHDEEVREL----------VADRVMDVT 223 (224)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH----------hcceeEecC
Confidence 56899999999999997654 478888888765 9999999999999876 899998764
No 242
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=4.6e-26 Score=192.97 Aligned_cols=150 Identities=23% Similarity=0.229 Sum_probs=105.8
Q ss_pred EEEcCceEEeCCe--eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------ccccccc
Q 023563 53 VSPRPPLFSLQNR--NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRYGLD 123 (280)
Q Consensus 53 l~~~~ls~~y~~~--~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~~~~ 123 (280)
|+++|++++|+++ .+++++||+|++|++++|+||||||||||+ ++|+|+.. ....+.+-.... ..+..++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLL-KLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999875 799999999999999999999999999999 99999843 223332221110 1122334
Q ss_pred eeeeecccccccccccC-ch-HHHHH--HhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechh
Q 023563 124 SIVTHDGVKLPCCALTT-LS-SFRQK--FGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGD 193 (280)
Q Consensus 124 ~v~~~~~~~~~~~~~~~-l~-~~~~~--~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~ 193 (280)
++++... .++....++ ++ ...++ .+++++.+|++||||||++. ..+.++|+++. + ++|+|++|||++
T Consensus 80 ~~~~~~~-~~~~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~ 156 (171)
T cd03228 80 YVPQDPF-LFSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRLS 156 (171)
T ss_pred EEcCCch-hccchHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH
Confidence 4444332 222211112 11 11122 27899999999999999654 45778888875 3 799999999999
Q ss_pred HhhhccCCccccccccceEEEeec
Q 023563 194 YLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 194 ~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
++. .||++++|++
T Consensus 157 ~~~-----------~~d~~~~l~~ 169 (171)
T cd03228 157 TIR-----------DADRIIVLDD 169 (171)
T ss_pred HHH-----------hCCEEEEEcC
Confidence 885 4999999975
No 243
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.93 E-value=2.8e-26 Score=249.89 Aligned_cols=172 Identities=13% Similarity=0.126 Sum_probs=124.8
Q ss_pred CccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cccccc
Q 023563 50 HSMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYG 121 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~ 121 (280)
+.+|+++||+|+|++ +.+|+|+||+|++||++||+||||||||||+ ++|.|+.. ....+.+.... ...+..
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLl-kmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTF-KMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHH-HHHhCCCCCCccEEEECCEECcchHHHHhhh
Confidence 347999999999985 6799999999999999999999999999999 99999732 11222111100 001122
Q ss_pred cceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563 122 LDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 122 ~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl 160 (280)
+++++|...... ..+...++.++.++. |+||+.+|++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLL 2093 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVL 2093 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 333333211100 011223343333322 678999999999
Q ss_pred EeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeec
Q 023563 161 IDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKT 233 (280)
Q Consensus 161 LDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~ 233 (280)
||||+++ ..+++.|++++++ |+|||++||+++++.+ +||||++|++ ++++.|+++++..+..
T Consensus 2094 LDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~mee~e~----------lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2094 LDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEA----------LCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 9999664 4589999998876 9999999999999987 9999999999 9999999998865443
No 244
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.93 E-value=7.6e-26 Score=200.81 Aligned_cols=163 Identities=15% Similarity=0.150 Sum_probs=110.8
Q ss_pred EEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee-------------------E
Q 023563 53 VSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN-------------------V 109 (280)
Q Consensus 53 l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~-------------------i 109 (280)
|+++|+++.|++ +.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. .... +
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVV-SLLERFYDPTSGEILLDGVDIRDLNLRWLRSQI 79 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHH-HHHhccCCCCCCEEEECCEehhhcCHHHHHhhE
Confidence 478999999964 4699999999999999999999999999999 99999832 1112 3
Q ss_pred EEecCCcccc-cccceeee--eccc----ccccccccCchHHH-----------------------HH--HhhhhccCCC
Q 023563 110 AVIKSNKDTR-YGLDSIVT--HDGV----KLPCCALTTLSSFR-----------------------QK--FGSDAYDQVD 157 (280)
Q Consensus 110 ~~~~~~~~~~-~~~~~v~~--~~~~----~~~~~~~~~l~~~~-----------------------~~--~a~aL~~~p~ 157 (280)
++++|..... ..+...+. .... ........++..+. .+ .+++++.+|+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 80 GLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 3333332110 00000000 0000 00000001111111 11 1678999999
Q ss_pred EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+||||||++.. .+++.|+++. + |+|||++||+++++. +||++++|++ +++..|+.+++.
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~-~-g~~vi~~sh~~~~~~-----------~~d~v~~l~~G~i~~~~~~~~~~ 225 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAM-K-GRTTIVIAHRLSTIR-----------NADLIAVLQNGQVVEQGTHDELM 225 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHh-----------hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999996654 5788888886 4 999999999999884 7999999999 888888776664
No 245
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.93 E-value=8.8e-26 Score=196.87 Aligned_cols=152 Identities=18% Similarity=0.100 Sum_probs=103.4
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc---ccccccceeee
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK---DTRYGLDSIVT 127 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~---~~~~~~~~v~~ 127 (280)
||+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+ ++|.|+.. ....+.+-.... ..+..++++.+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLL-RLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 69999999999988899999999999999999999999999999 99999832 222222211100 01111222221
Q ss_pred eccc-----------------------ccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH--
Q 023563 128 HDGV-----------------------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE-- 168 (280)
Q Consensus 128 ~~~~-----------------------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~-- 168 (280)
+... ....+...++..+.++. +++++.+|++||||||++..
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 160 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 1100 00011112222221111 57899999999999996644
Q ss_pred ----HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 169 ----DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 169 ----~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
.+++.|++++++ |+|||++||+++++. .|+++.++.
T Consensus 161 ~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~------------~~~~~~~~~ 200 (207)
T PRK13539 161 AAVALFAELIRAHLAQ-GGIVIAATHIPLGLP------------GARELDLGP 200 (207)
T ss_pred HHHHHHHHHHHHHHHC-CCEEEEEeCCchhhc------------cCcEEeecC
Confidence 578888888765 999999999999885 288877754
No 246
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.93 E-value=1.9e-25 Score=188.56 Aligned_cols=147 Identities=19% Similarity=0.169 Sum_probs=100.0
Q ss_pred EEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CC--------eeEEEecCCccccccc
Q 023563 53 VSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KG--------RNVAVIKSNKDTRYGL 122 (280)
Q Consensus 53 l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g--------~~i~~~~~~~~~~~~~ 122 (280)
|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. .. +.+++++|+.... .
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~-~- 77 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLF-RALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP-L- 77 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCCceEEEECCCCccc-c-
Confidence 46899999995 46799999999999999999999999999999 99999833 22 3455555543210 0
Q ss_pred ceeeeecccccccccccCchHH-HH--HHhhhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCCEEEEEEechhHhhh
Q 023563 123 DSIVTHDGVKLPCCALTTLSSF-RQ--KFGSDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGKTVIVAGLDGDYLRR 197 (280)
Q Consensus 123 ~~v~~~~~~~~~~~~~~~l~~~-~~--~~a~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~tviivtHdl~~~~~ 197 (280)
..+. ++.... ....++.- .+ ..+++++.+|++||||||++..|. .+.+.++..+.+.|+|++|||++++.
T Consensus 78 ~tv~--~nl~~~--~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~- 152 (166)
T cd03223 78 GTLR--EQLIYP--WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWK- 152 (166)
T ss_pred ccHH--HHhhcc--CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHh-
Confidence 0000 000000 11222221 22 237899999999999999876541 22222222233789999999998653
Q ss_pred ccCCccccccccceEEEeec
Q 023563 198 SFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 198 ~~~~~~~ll~~aD~i~~L~~ 217 (280)
+||++++|++
T Consensus 153 ----------~~d~i~~l~~ 162 (166)
T cd03223 153 ----------FHDRVLDLDG 162 (166)
T ss_pred ----------hCCEEEEEcC
Confidence 8999999987
No 247
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.93 E-value=1.5e-25 Score=197.66 Aligned_cols=160 Identities=17% Similarity=0.145 Sum_probs=109.7
Q ss_pred cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh----CCeeEEEecCCc---cccc
Q 023563 52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ----KGRNVAVIKSNK---DTRY 120 (280)
Q Consensus 52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~----~g~~i~~~~~~~---~~~~ 120 (280)
++.++|++++|.+ +.+++|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+..... ..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-k~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLL-DAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHH-HHHhCccCCCCCCceEEEECCEECChHHhcc
Confidence 5789999999954 5799999999999999999999999999999 99999854 333332221110 1112
Q ss_pred ccceeeeecccccc-------------------------------cccccCchHHHHH--------------HhhhhccC
Q 023563 121 GLDSIVTHDGVKLP-------------------------------CCALTTLSSFRQK--------------FGSDAYDQ 155 (280)
Q Consensus 121 ~~~~v~~~~~~~~~-------------------------------~~~~~~l~~~~~~--------------~a~aL~~~ 155 (280)
.++++++....... .+...++..+.++ .+++++.+
T Consensus 82 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 161 (226)
T cd03234 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD 161 (226)
T ss_pred cEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence 22222221110000 0000111111111 15689999
Q ss_pred CCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEech-hHhhhccCCccccccccceEEEeec-eecccc
Q 023563 156 VDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDG-DYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 156 p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl-~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
|++||||||++. ..++++|+++.++ |.|+|++||++ +++.+ +||++++|++ ++++.|
T Consensus 162 p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~----------~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 162 PKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFR----------LFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHH----------hCCEEEEEeCCEEEecC
Confidence 999999999654 4588888888765 89999999998 57765 9999999999 877654
No 248
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=6.1e-26 Score=228.06 Aligned_cols=165 Identities=15% Similarity=0.149 Sum_probs=116.6
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---------CCeeEEEecCCccccc
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---------KGRNVAVIKSNKDTRY 120 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---------~g~~i~~~~~~~~~~~ 120 (280)
.++|+++||++.|+++.+|+|+||+|.+|+++||+||||||||||+ ++|+|+.. .+..++|++|......
T Consensus 310 ~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLl-k~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l 388 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLI-KLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFL 388 (638)
T ss_pred CceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCeEEECCCEEEEEecCcchhhC
Confidence 4589999999999998999999999999999999999999999999 99999732 1335777777531100
Q ss_pred ccc-eeeee-----cc----cccccccccCch-HHHHH--------------HhhhhccCCCEEEEeCcccHHH------
Q 023563 121 GLD-SIVTH-----DG----VKLPCCALTTLS-SFRQK--------------FGSDAYDQVDVIGIDEAQFFED------ 169 (280)
Q Consensus 121 ~~~-~v~~~-----~~----~~~~~~~~~~l~-~~~~~--------------~a~aL~~~p~lLlLDEP~~~~~------ 169 (280)
... .+... .. .....+...++. ....+ .|++++.+|++|||||||+.+|
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~ 468 (638)
T PRK10636 389 RADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQA 468 (638)
T ss_pred CccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 000 00000 00 000111122221 11111 1568999999999999988765
Q ss_pred HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec-cccCcceee
Q 023563 170 LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE-FCGKRAFFT 229 (280)
Q Consensus 170 i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~-~~g~~~~~~ 229 (280)
+.+.|.++ +.|||+||||++++.+ +||+|++|++ +++ +.|+.+++.
T Consensus 469 l~~~L~~~----~gtvi~vSHd~~~~~~----------~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 469 LTEALIDF----EGALVVVSHDRHLLRS----------TTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HHHHHHHc----CCeEEEEeCCHHHHHH----------hCCEEEEEECCEEEEcCCCHHHHH
Confidence 44444443 4599999999999987 9999999998 776 788887763
No 249
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=6.2e-26 Score=200.98 Aligned_cols=163 Identities=18% Similarity=0.221 Sum_probs=110.6
Q ss_pred EEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCee------------EEE
Q 023563 53 VSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRN------------VAV 111 (280)
Q Consensus 53 l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~------------i~~ 111 (280)
|+++|++++|+ ++.+++|+||+|++|++++|+||||||||||+ ++|+|+.. +|.+ +++
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTIL-RLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999995 57799999999999999999999999999999 99999842 2221 333
Q ss_pred ecCCcccc-cccceee--eeccc----ccccccccCchHHH-----------------------HH--HhhhhccCCCEE
Q 023563 112 IKSNKDTR-YGLDSIV--THDGV----KLPCCALTTLSSFR-----------------------QK--FGSDAYDQVDVI 159 (280)
Q Consensus 112 ~~~~~~~~-~~~~~v~--~~~~~----~~~~~~~~~l~~~~-----------------------~~--~a~aL~~~p~lL 159 (280)
++|+.... ..+...+ ..... ........++.... .+ .+++|+.+|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 33332110 0000000 00000 00000000111110 11 167899999999
Q ss_pred EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||||++.. .+++.|.++++ |+|||++||+++++. .||++++|++ +++..|+++++.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~~~~-----------~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIV-----------NADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHHHH-----------hCCEEEEEECCEEEeeCCHHHHh
Confidence 999997654 47788877754 899999999999885 5999999999 888888877665
No 250
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.93 E-value=5.7e-26 Score=203.43 Aligned_cols=160 Identities=18% Similarity=0.111 Sum_probs=109.6
Q ss_pred EEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc------ccccccceeee
Q 023563 54 SPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK------DTRYGLDSIVT 127 (280)
Q Consensus 54 ~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~------~~~~~~~~v~~ 127 (280)
+++||++. .+|+|+||+|++|++++|+||||||||||+ ++|+|+......+.+..... ..+..++++++
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl-~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 76 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLL-ARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQ 76 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecc
Confidence 57888875 389999999999999999999999999999 99999853333332211100 00111222222
Q ss_pred ecccc--------------------------cccccccCchHHHHHH--------------hhhhcc-------CCCEEE
Q 023563 128 HDGVK--------------------------LPCCALTTLSSFRQKF--------------GSDAYD-------QVDVIG 160 (280)
Q Consensus 128 ~~~~~--------------------------~~~~~~~~l~~~~~~~--------------a~aL~~-------~p~lLl 160 (280)
..... ...+...++....++. +++|+. +|++||
T Consensus 77 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~lll 156 (248)
T PRK03695 77 QQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLL 156 (248)
T ss_pred cCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEE
Confidence 11000 0001111222211111 567886 679999
Q ss_pred EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||++.+ .+.++|++++++ |.|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 157 lDEPt~~LD~~~~~~l~~~L~~~~~~-~~tvi~~sH~~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 157 LDEPMNSLDVAQQAALDRLLSELCQQ-GIAVVMSSHDLNHTLR----------HADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEECCHHHHh
Confidence 99996654 478888888765 9999999999998876 9999999999 999999888775
No 251
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.93 E-value=5.6e-26 Score=222.21 Aligned_cols=166 Identities=16% Similarity=0.113 Sum_probs=115.0
Q ss_pred CccEEEcCceEEe---CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CCeeEEEecCCc-------c
Q 023563 50 HSMVSPRPPLFSL---QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVAVIKSNK-------D 117 (280)
Q Consensus 50 ~~~l~~~~ls~~y---~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~~~~~~~-------~ 117 (280)
.++|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+..... .
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl-~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~ 333 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELV-QALFGAYPGKFEGNVFINGKPVDIRNPAQA 333 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHH-HHHhCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 3589999999999 346799999999999999999999999999999 99999853 233333221110 0
Q ss_pred cccccceeeeecc---ccc--------------------------------ccccccCchH-HHH------------H--
Q 023563 118 TRYGLDSIVTHDG---VKL--------------------------------PCCALTTLSS-FRQ------------K-- 147 (280)
Q Consensus 118 ~~~~~~~v~~~~~---~~~--------------------------------~~~~~~~l~~-~~~------------~-- 147 (280)
.+..+++++|... ... ..+...++.. ..+ +
T Consensus 334 ~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 413 (500)
T TIGR02633 334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAV 413 (500)
T ss_pred HhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHH
Confidence 0112233332210 000 0001111110 000 0
Q ss_pred HhhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563 148 FGSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE 220 (280)
Q Consensus 148 ~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~ 220 (280)
.|++|+.+|++||||||++.+ .++++|++++++ |.|||++|||++++.+ +||++++|++ +++
T Consensus 414 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~----------~~d~v~~l~~G~i~ 482 (500)
T TIGR02633 414 LAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLG----------LSDRVLVIGEGKLK 482 (500)
T ss_pred HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHH----------hCCEEEEEECCEEE
Confidence 156899999999999997755 478888888876 9999999999999986 9999999998 887
Q ss_pred cccCcce
Q 023563 221 FCGKRAF 227 (280)
Q Consensus 221 ~~g~~~~ 227 (280)
+.++.++
T Consensus 483 ~~~~~~~ 489 (500)
T TIGR02633 483 GDFVNHA 489 (500)
T ss_pred EEEcccc
Confidence 6665443
No 252
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1e-25 Score=207.85 Aligned_cols=169 Identities=16% Similarity=0.105 Sum_probs=117.8
Q ss_pred CCCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCCc-----
Q 023563 48 FIHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSNK----- 116 (280)
Q Consensus 48 ~~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~~----- 116 (280)
...++|+++||+++|+++.+|+++||+|.+||+++|+||||||||||+ ++|+|+.. ....+.+-....
T Consensus 41 ~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl-~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 41 DGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFL-RCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred CCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhccccccCCCCCceEEEECCEEcccccc
Confidence 345689999999999988999999999999999999999999999999 99999852 222232211100
Q ss_pred ---ccccccceeeeeccc---------ccc------------------------------cccccCc----hHHHHH---
Q 023563 117 ---DTRYGLDSIVTHDGV---------KLP------------------------------CCALTTL----SSFRQK--- 147 (280)
Q Consensus 117 ---~~~~~~~~v~~~~~~---------~~~------------------------------~~~~~~l----~~~~~~--- 147 (280)
..+..+.++++.... ... .+...++ .....+
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 011123333332110 000 0000111 011111
Q ss_pred -----------HhhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccc
Q 023563 148 -----------FGSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLAD 210 (280)
Q Consensus 148 -----------~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD 210 (280)
.+++|+.+|++||||||++.+ .++++|+++++ +.|||++||+++++.+ +||
T Consensus 200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i~~----------~~d 267 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAAR----------ISD 267 (305)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHH----------hcC
Confidence 167899999999999996654 57888888875 5899999999999876 999
Q ss_pred eE-EEeec-eeccccCcceee
Q 023563 211 SV-TKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 211 ~i-~~L~~-~i~~~g~~~~~~ 229 (280)
++ ++|++ +++..|+++++.
T Consensus 268 ~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 268 QTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred EEEEEecCCEEEEeCCHHHHH
Confidence 97 56788 999999988775
No 253
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.93 E-value=9.2e-26 Score=195.89 Aligned_cols=151 Identities=19% Similarity=0.144 Sum_probs=103.3
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----cccccccceee
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRYGLDSIV 126 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~~~~~v~ 126 (280)
|+++|+++.|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.... ...+..+++++
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLL-RILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 4789999999988999999999999999999999999999999 99999832 22222111100 01111222222
Q ss_pred eecccc---------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH----
Q 023563 127 THDGVK---------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF---- 167 (280)
Q Consensus 127 ~~~~~~---------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~---- 167 (280)
++.... ...+...++..+.++. |++++.+|++||||||++.
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 159 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKA 159 (201)
T ss_pred cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 211100 0011112222221111 6789999999999999654
Q ss_pred --HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563 168 --EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL 215 (280)
Q Consensus 168 --~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L 215 (280)
..+.+.|+++.++ |.|+|++|||...... +|++++++
T Consensus 160 ~~~~l~~~l~~~~~~-g~tiii~sH~~~~~~~----------~~~~~~~~ 198 (201)
T cd03231 160 GVARFAEAMAGHCAR-GGMVVLTTHQDLGLSE----------AGARELDL 198 (201)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCchhhhh----------ccceeEec
Confidence 4578888888765 9999999999887765 89999886
No 254
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=221.51 Aligned_cols=167 Identities=13% Similarity=0.168 Sum_probs=115.1
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC-eeEEEecCCcccccc-
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG-RNVAVIKSNKDTRYG- 121 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g-~~i~~~~~~~~~~~~- 121 (280)
||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. .+ ..+++++|.......
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl-~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 79 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFM-KILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEF 79 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCC
Confidence 58999999999988999999999999999999999999999999 99999732 22 346677665321100
Q ss_pred -cceee------------------ee--------------------------cccccccccccCchHHH-HH--------
Q 023563 122 -LDSIV------------------TH--------------------------DGVKLPCCALTTLSSFR-QK-------- 147 (280)
Q Consensus 122 -~~~v~------------------~~--------------------------~~~~~~~~~~~~l~~~~-~~-------- 147 (280)
+...+ .. .......+...++.... ++
T Consensus 80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG 159 (530)
T PRK15064 80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPG 159 (530)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHH
Confidence 00000 00 00000111122232211 11
Q ss_pred ------HhhhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-e
Q 023563 148 ------FGSDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-R 218 (280)
Q Consensus 148 ------~a~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~ 218 (280)
+|++|+.+|++||||||++.+|. .+.+.++..+.|.|||++|||++++.+ +||+|++|++ +
T Consensus 160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~----------~~d~i~~l~~g~ 229 (530)
T PRK15064 160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNS----------VCTHMADLDYGE 229 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh----------hcceEEEEeCCE
Confidence 16789999999999999887641 222333323348999999999999986 9999999999 8
Q ss_pred e-ccccCcceee
Q 023563 219 C-EFCGKRAFFT 229 (280)
Q Consensus 219 i-~~~g~~~~~~ 229 (280)
+ ++.|+++++.
T Consensus 230 i~~~~g~~~~~~ 241 (530)
T PRK15064 230 LRVYPGNYDEYM 241 (530)
T ss_pred EEEecCCHHHHH
Confidence 7 4788877664
No 255
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.93 E-value=8.4e-26 Score=195.47 Aligned_cols=147 Identities=20% Similarity=0.156 Sum_probs=99.4
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccccce
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYGLDS 124 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~~~~ 124 (280)
|+++|+++.|+++.+|+|+||+|.+|++++|+||||||||||+ ++|+|+.. +|.++.... ...+..+++
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLL-RILAGLLRPDSGEVRWNGTALAEQR--DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCccEEEECCEEcccch--HHhhhheEE
Confidence 4789999999999999999999999999999999999999999 99999732 222211000 000111222
Q ss_pred eeeeccc-----------------------ccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH
Q 023563 125 IVTHDGV-----------------------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF 167 (280)
Q Consensus 125 v~~~~~~-----------------------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~ 167 (280)
+++.... ....+...++..+.++. +++++.+|++||||||++.
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 2221100 00111112232222211 5789999999999999764
Q ss_pred H------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563 168 E------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL 215 (280)
Q Consensus 168 ~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L 215 (280)
. .+++.|.+++++ |.|+|++||+...+ .|++++.+
T Consensus 158 LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~~------------~~~~~~~~ 198 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLAR-GGIVLLTTHQDLGL------------VEARELRL 198 (198)
T ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEEcccccc------------cceEEeeC
Confidence 4 578888888765 99999999999766 57887653
No 256
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.93 E-value=1.9e-26 Score=232.34 Aligned_cols=163 Identities=20% Similarity=0.206 Sum_probs=119.4
Q ss_pred cEEEcCceEEeCCe--eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccc
Q 023563 52 MVSPRPPLFSLQNR--NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYG 121 (280)
Q Consensus 52 ~l~~~~ls~~y~~~--~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~ 121 (280)
-++++||+++|+.. .+|+|+||+|++||.+||+|+||||||||+ |++.|+.. +|.++..+.. ...|..
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~-KLL~gly~p~~G~I~~dg~dl~~i~~-~~lR~~ 548 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLL-KLLLGLYKPQQGRILLDGVDLNDIDL-ASLRRQ 548 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEeHHhcCH-HHHHhh
Confidence 59999999999765 699999999999999999999999999999 99999732 3333221111 112333
Q ss_pred cceeeeeccccc--------------------ccccccC----------------------ch-HHHHHH--hhhhccCC
Q 023563 122 LDSIVTHDGVKL--------------------PCCALTT----------------------LS-SFRQKF--GSDAYDQV 156 (280)
Q Consensus 122 ~~~v~~~~~~~~--------------------~~~~~~~----------------------l~-~~~~~~--a~aL~~~p 156 (280)
++++.|+..... .+....+ ++ ..+.+. ||||+.+|
T Consensus 549 ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P 628 (709)
T COG2274 549 VGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP 628 (709)
T ss_pred eeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC
Confidence 444433211100 0000111 11 111121 78999999
Q ss_pred CEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++|||||||+..| +.+.|.++.. |+|+|++||.+..+. .||+|++|+. +++.+|+.+++.
T Consensus 629 ~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl~ti~-----------~adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 629 KILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRLSTIR-----------SADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred CEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccchHhh-----------hccEEEEccCCceeccCCHHHHH
Confidence 9999999988764 7777877765 899999999999987 7999999999 999999999987
No 257
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8.7e-26 Score=222.44 Aligned_cols=165 Identities=19% Similarity=0.200 Sum_probs=116.8
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC-eeEEEecCCccc--
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG-RNVAVIKSNKDT-- 118 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g-~~i~~~~~~~~~-- 118 (280)
.++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. .+ ..++|++|....
T Consensus 317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl-~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~ 395 (530)
T PRK15064 317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLL-RTLVGELEPDSGTVKWSENANIGYYAQDHAYDF 395 (530)
T ss_pred CceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCceEEEEEcccccccC
Confidence 3589999999999988899999999999999999999999999999 99999732 22 357777775421
Q ss_pred c--cccceeee---ecc----cccccccccCc-hHHHHHH--------------hhhhccCCCEEEEeCcccHHH-----
Q 023563 119 R--YGLDSIVT---HDG----VKLPCCALTTL-SSFRQKF--------------GSDAYDQVDVIGIDEAQFFED----- 169 (280)
Q Consensus 119 ~--~~~~~v~~---~~~----~~~~~~~~~~l-~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~~----- 169 (280)
. ..+...+. ... .....+...++ ....++. |++++.+|++||||||++.+|
T Consensus 396 ~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 475 (530)
T PRK15064 396 ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIE 475 (530)
T ss_pred CCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 1 11111000 000 00111112222 1122211 678999999999999987764
Q ss_pred -HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec-cccCcceee
Q 023563 170 -LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE-FCGKRAFFT 229 (280)
Q Consensus 170 -i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~-~~g~~~~~~ 229 (280)
+++.|++ .+.|||++|||++++.+ +||++++|++ +++ +.|++.++.
T Consensus 476 ~l~~~l~~----~~~tvi~vsHd~~~~~~----------~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 476 SLNMALEK----YEGTLIFVSHDREFVSS----------LATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHHHHHHH----CCCEEEEEeCCHHHHHH----------hCCEEEEEECCeEEEcCCCHHHHH
Confidence 4444433 35699999999999986 9999999998 776 778877665
No 258
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=8.4e-26 Score=187.71 Aligned_cols=166 Identities=16% Similarity=0.205 Sum_probs=127.3
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC-eeEEEecCC------------ccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG-RNVAVIKSN------------KDT 118 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g-~~i~~~~~~------------~~~ 118 (280)
.|+++|+++.||...+|.||+|+.++|+.+.|+||+|+|||||+ +.+.-+.... ..+..-.++ ...
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssll-r~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLL-RVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHH-HHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 48999999999999999999999999999999999999999999 8887764321 111111111 122
Q ss_pred ccccceeeeeccccccc----------------------------ccccCchHHHHHH--------------hhhhccCC
Q 023563 119 RYGLDSIVTHDGVKLPC----------------------------CALTTLSSFRQKF--------------GSDAYDQV 156 (280)
Q Consensus 119 ~~~~~~v~~~~~~~~~~----------------------------~~~~~l~~~~~~~--------------a~aL~~~p 156 (280)
|..++.+||+..+.... +....+..+++++ ||||+++|
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkp 160 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCC
Confidence 56677777764432111 1111233333333 68999999
Q ss_pred CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++||+|||+..+ ++.++|+++... |+|-+++||..+.+.+ +|.+|+.|.+ +++..|+.+-+.
T Consensus 161 qvllfdeptaaldpeitaqvv~iikel~~t-gitqvivthev~va~k----------~as~vvyme~g~ive~g~a~~ft 229 (242)
T COG4161 161 QVLLFDEPTAALDPEITAQIVSIIKELAET-GITQVIVTHEVEVARK----------TASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred cEEeecCcccccCHHHHHHHHHHHHHHHhc-CceEEEEEeehhHHHh----------hhhheEeeecCeeEeecchhhcc
Confidence 999999998875 488999999875 9999999999999998 9999999999 999999987665
No 259
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.6e-26 Score=223.37 Aligned_cols=162 Identities=17% Similarity=0.161 Sum_probs=111.7
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe-------------e
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR-------------N 108 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~-------------~ 108 (280)
.++|+++|+++.|+ .+|+|+||+|++|++++|+||||||||||+ ++|+|+.. .|. .
T Consensus 263 ~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl-k~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 263 ETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELM-NCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred CcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 45899999999874 389999999999999999999999999999 99999732 221 2
Q ss_pred EEEecCCcc---cc--cccceeee--ec----------cc---------ccccccccCch-HHHHHH-------------
Q 023563 109 VAVIKSNKD---TR--YGLDSIVT--HD----------GV---------KLPCCALTTLS-SFRQKF------------- 148 (280)
Q Consensus 109 i~~~~~~~~---~~--~~~~~v~~--~~----------~~---------~~~~~~~~~l~-~~~~~~------------- 148 (280)
++|++|... .. ..+...+. .. +. ....+...++. +..++.
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 419 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVL 419 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHH
Confidence 344444310 00 00000000 00 00 00001111221 111111
Q ss_pred -hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563 149 -GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE 220 (280)
Q Consensus 149 -a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~ 220 (280)
|++|+.+|++||||||++.+ .++++|++++++ |.|||++|||++++.+ +||++++|++ +++
T Consensus 420 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~vsHd~~~~~~----------~~d~i~~l~~G~i~ 488 (510)
T PRK09700 420 ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIIT----------VCDRIAVFCEGRLT 488 (510)
T ss_pred HHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHh----------hCCEEEEEECCEEE
Confidence 67899999999999997654 478889988875 9999999999999986 9999999999 887
Q ss_pred cccCc
Q 023563 221 FCGKR 225 (280)
Q Consensus 221 ~~g~~ 225 (280)
..++.
T Consensus 489 ~~~~~ 493 (510)
T PRK09700 489 QILTN 493 (510)
T ss_pred EEecC
Confidence 76655
No 260
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=1.3e-25 Score=197.41 Aligned_cols=154 Identities=18% Similarity=0.158 Sum_probs=107.3
Q ss_pred CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-CeeEEEecCCcccccccceee-----eecccc-----
Q 023563 64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-GRNVAVIKSNKDTRYGLDSIV-----THDGVK----- 132 (280)
Q Consensus 64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g~~i~~~~~~~~~~~~~~~v~-----~~~~~~----- 132 (280)
..++|+||||++++||.+||+|+||||||||+ ++|+|.... ...+. +.........++.-+ .+++..
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLl-kliaGi~~Pt~G~v~-v~G~v~~li~lg~Gf~pelTGreNi~l~~~~ 116 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLL-KLIAGIYKPTSGKVK-VTGKVAPLIELGAGFDPELTGRENIYLRGLI 116 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHH-HHHhCccCCCCceEE-EcceEehhhhcccCCCcccchHHHHHHHHHH
Confidence 35799999999999999999999999999999 999997442 22221 111111000000000 011110
Q ss_pred ------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCc------ccHHHHHHHHHHHHhh
Q 023563 133 ------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEA------QFFEDLYDFCREAADH 180 (280)
Q Consensus 133 ------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP------~~~~~i~~~l~~l~~~ 180 (280)
.+.....++.++.+.+ +-+...+|++||+||. .|+....+.+.++.++
T Consensus 117 ~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~ 196 (249)
T COG1134 117 LGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEK 196 (249)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHc
Confidence 0111122333333322 2356789999999998 5677788889999776
Q ss_pred cCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563 181 DGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL 230 (280)
Q Consensus 181 ~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~ 230 (280)
+.|+|+||||++.+.+ +||++++|++ .+...|+++++..
T Consensus 197 -~~tiv~VSHd~~~I~~----------~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 197 -NKTIVLVSHDLGAIKQ----------YCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred -CCEEEEEECCHHHHHH----------hcCeeEEEeCCEEEEcCCHHHHHH
Confidence 8999999999999998 9999999999 9999999998873
No 261
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.93 E-value=5e-26 Score=222.06 Aligned_cols=164 Identities=12% Similarity=0.085 Sum_probs=112.7
Q ss_pred CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC--CeeEEEecCCc-------ccc
Q 023563 49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK--GRNVAVIKSNK-------DTR 119 (280)
Q Consensus 49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~--g~~i~~~~~~~-------~~~ 119 (280)
..++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+... ...+.+..... ..+
T Consensus 257 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl-~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 257 NEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLL-SLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred CCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 34689999999999988899999999999999999999999999999 999997432 22332221100 001
Q ss_pred cccceeeeeccc---------------------------------ccccccccCchH-HHHHH--------------hhh
Q 023563 120 YGLDSIVTHDGV---------------------------------KLPCCALTTLSS-FRQKF--------------GSD 151 (280)
Q Consensus 120 ~~~~~v~~~~~~---------------------------------~~~~~~~~~l~~-~~~~~--------------a~a 151 (280)
..+++++|.... ....+...++.. ..++. |++
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 415 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence 122222221000 000111123322 22211 678
Q ss_pred hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
|+.+|++||||||++.+ .++++|++++++.+.|||++|||++++.+ .+||++++|++ +++..
T Consensus 416 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~---------~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 416 LVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPA---------CITHRLEFVPDGDIYRY 484 (490)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhh---------hhheeEEEecCCceEEe
Confidence 99999999999997654 58889999887634579999999999864 14999999998 76543
No 262
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.93 E-value=1.1e-25 Score=218.87 Aligned_cols=168 Identities=17% Similarity=0.131 Sum_probs=117.5
Q ss_pred CccEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC------ccc-
Q 023563 50 HSMVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------KDT- 118 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------~~~- 118 (280)
.++++++|++++|++ +.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+.... ...
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLL-kiLaGLl~P~sGeI~I~G~~~~i~~~~~l~ 97 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLS-NLIAGVTMPNKGTVDIKGSAALIAISSGLN 97 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHH-HHHhCCCCCCceEEEECCEeeeEEeccccC
Confidence 458999999999976 4699999999999999999999999999999 99999843 22333221110 000
Q ss_pred -ccccceeee----eccc--------ccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH---
Q 023563 119 -RYGLDSIVT----HDGV--------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE--- 168 (280)
Q Consensus 119 -~~~~~~v~~----~~~~--------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~--- 168 (280)
...+...+. .... ....+...++..+.++. |+||+.+|++||||||++.+
T Consensus 98 ~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~ 177 (549)
T PRK13545 98 GQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQT 177 (549)
T ss_pred CCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 000000000 0000 00111122333222221 67899999999999997654
Q ss_pred ---HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 169 ---DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 169 ---~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
.+++.|.+++++ |.|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 178 sr~~LlelL~el~~~-G~TIIIVSHdl~~i~~----------l~DrIivL~~GkIv~~G~~~el~ 231 (549)
T PRK13545 178 FTKKCLDKMNEFKEQ-GKTIFFISHSLSQVKS----------FCTKALWLHYGQVKEYGDIKEVV 231 (549)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEECCHHHHHH----------hCCEEEEEECCEEEEECCHHHHH
Confidence 477888888664 9999999999999986 9999999999 998999887765
No 263
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.93 E-value=1.4e-25 Score=195.17 Aligned_cols=160 Identities=16% Similarity=0.064 Sum_probs=107.6
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV 109 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i 109 (280)
.|+++|++++|++ +.+++|+||+|++|++++|+||||||||||+ ++|+|+.. +|. .+
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLI-LALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 6899999999975 4799999999999999999999999999999 99999732 221 23
Q ss_pred EEecCCccccc-ccceeeeec-cc----cccccc----ccCchH-HHHH--HhhhhccCCCEEEEeCcccHH------HH
Q 023563 110 AVIKSNKDTRY-GLDSIVTHD-GV----KLPCCA----LTTLSS-FRQK--FGSDAYDQVDVIGIDEAQFFE------DL 170 (280)
Q Consensus 110 ~~~~~~~~~~~-~~~~v~~~~-~~----~~~~~~----~~~l~~-~~~~--~a~aL~~~p~lLlLDEP~~~~------~i 170 (280)
++++|+..... .+...+... .. ....+. ...++. ...+ .+++++.+|++||||||++.. .+
T Consensus 85 ~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l 164 (207)
T cd03369 85 TIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI 164 (207)
T ss_pred EEEecCCcccCccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHH
Confidence 34333321100 000000000 00 000000 001110 1111 167899999999999997654 47
Q ss_pred HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCc
Q 023563 171 YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKR 225 (280)
Q Consensus 171 ~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~ 225 (280)
+++|+++. + |.|+|++||+++++. .||++++|++ +++..|++
T Consensus 165 ~~~l~~~~-~-~~tiii~th~~~~~~-----------~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 165 QKTIREEF-T-NSTILTIAHRLRTII-----------DYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHhc-C-CCEEEEEeCCHHHHh-----------hCCEEEEEECCEEEecCCC
Confidence 78888774 3 899999999999885 5999999999 87766653
No 264
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.93 E-value=3.1e-25 Score=219.81 Aligned_cols=168 Identities=15% Similarity=0.123 Sum_probs=114.4
Q ss_pred CccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---------CCeeEEEecCCcccc
Q 023563 50 HSMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---------KGRNVAVIKSNKDTR 119 (280)
Q Consensus 50 ~~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---------~g~~i~~~~~~~~~~ 119 (280)
.+||+++||+++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. .+..+++++|.....
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLl-k~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 82 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLL-RIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD 82 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEecCCCEEEEEecCCCCC
Confidence 45899999999998 78899999999999999999999999999999 99999732 124567777764321
Q ss_pred c--ccceeeeec------------------c------------------------------cccccccccCchH------
Q 023563 120 Y--GLDSIVTHD------------------G------------------------------VKLPCCALTTLSS------ 143 (280)
Q Consensus 120 ~--~~~~v~~~~------------------~------------------------------~~~~~~~~~~l~~------ 143 (280)
. .+...+... . .....+...++..
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 162 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT 162 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchh
Confidence 1 110000000 0 0000000111100
Q ss_pred -----HHHH--HhhhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEE
Q 023563 144 -----FRQK--FGSDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTK 214 (280)
Q Consensus 144 -----~~~~--~a~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~ 214 (280)
...+ .|++|+.+|++||||||++.+|. .+.+.++.++.+.|||++|||++++.+ +||+|++
T Consensus 163 ~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~----------~~d~i~~ 232 (556)
T PRK11819 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDN----------VAGWILE 232 (556)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHh----------hcCeEEE
Confidence 0111 16789999999999999887651 222333333335699999999999987 9999999
Q ss_pred eec-eec-cccCccee
Q 023563 215 LTA-RCE-FCGKRAFF 228 (280)
Q Consensus 215 L~~-~i~-~~g~~~~~ 228 (280)
|++ +++ +.|+.+++
T Consensus 233 l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 233 LDRGRGIPWEGNYSSW 248 (556)
T ss_pred EeCCEEEEecCCHHHH
Confidence 999 765 67776654
No 265
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.1e-25 Score=226.27 Aligned_cols=166 Identities=18% Similarity=0.190 Sum_probs=113.2
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCe--------eEEEecCCccc--cc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGR--------NVAVIKSNKDT--RY 120 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~--------~i~~~~~~~~~--~~ 120 (280)
||+++||+++|+++.+|+|+||+|++|+++||+||||||||||+ ++|+|+. .... .+++++|.... +.
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLL-kiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~ 79 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLL-ALLKNEISADGGSYTFPGNWQLAWVNQETPALPQP 79 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCC
Confidence 58999999999999999999999999999999999999999999 9999973 2222 34555553211 11
Q ss_pred ccceeeeecc--------------------------------------cccccccccCch-HHHHHH-------------
Q 023563 121 GLDSIVTHDG--------------------------------------VKLPCCALTTLS-SFRQKF------------- 148 (280)
Q Consensus 121 ~~~~v~~~~~--------------------------------------~~~~~~~~~~l~-~~~~~~------------- 148 (280)
.+.++++... .....+...++. ...++.
T Consensus 80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~ 159 (638)
T PRK10636 80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN 159 (638)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH
Confidence 1111211000 000001111221 111111
Q ss_pred -hhhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec-ccc
Q 023563 149 -GSDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE-FCG 223 (280)
Q Consensus 149 -a~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~-~~g 223 (280)
|++|+.+|++|||||||+.+|. .+.|.++..+.+.|||+||||++++.+ +||+|++|++ ++. +.|
T Consensus 160 LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~----------~~d~i~~L~~G~i~~~~g 229 (638)
T PRK10636 160 LAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDP----------IVDKIIHIEQQSLFEYTG 229 (638)
T ss_pred HHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHH----------hcCEEEEEeCCEEEEecC
Confidence 6789999999999999988752 334444444457899999999999987 9999999998 764 456
Q ss_pred Cccee
Q 023563 224 KRAFF 228 (280)
Q Consensus 224 ~~~~~ 228 (280)
+...+
T Consensus 230 ~~~~~ 234 (638)
T PRK10636 230 NYSSF 234 (638)
T ss_pred CHHHH
Confidence 65544
No 266
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.7e-25 Score=193.62 Aligned_cols=167 Identities=17% Similarity=0.171 Sum_probs=126.6
Q ss_pred ccEEEcCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc----------hhCCeeEEEecCCcccc
Q 023563 51 SMVSPRPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE----------TQKGRNVAVIKSNKDTR 119 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl----------~~~g~~i~~~~~~~~~~ 119 (280)
.+|+++||+.+.+++ .+|++|||+|++||+++|+||||||||||. ..|+|. .++|.++..++++.+.+
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa-~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLA-YTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHH-HHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 379999999999985 999999999999999999999999999999 999995 45788888887777777
Q ss_pred cccceeeeecccccc------------------------------cccccCch-HHHHHH---------------hhhhc
Q 023563 120 YGLDSIVTHDGVKLP------------------------------CCALTTLS-SFRQKF---------------GSDAY 153 (280)
Q Consensus 120 ~~~~~v~~~~~~~~~------------------------------~~~~~~l~-~~~~~~---------------a~aL~ 153 (280)
.++.-.||....... .+...++. .+++|. ...++
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~ 160 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL 160 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence 776555553211000 00111111 122222 22578
Q ss_pred cCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563 154 DQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~ 226 (280)
.+|++.|||||-+..| +.+.+.+++++ |.+++++||.-..+.. --.|++++|-+ +++..|.+
T Consensus 161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~-~~~~liITHy~rll~~---------i~pD~vhvl~~GrIv~sG~~- 229 (251)
T COG0396 161 LEPKLAILDEPDSGLDIDALKIVAEGINALREE-GRGVLIITHYQRLLDY---------IKPDKVHVLYDGRIVKSGDP- 229 (251)
T ss_pred cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC-CCeEEEEecHHHHHhh---------cCCCEEEEEECCEEEecCCH-
Confidence 8999999999977765 56677788876 9999999999887763 12599999999 99999999
Q ss_pred eee
Q 023563 227 FFT 229 (280)
Q Consensus 227 ~~~ 229 (280)
++.
T Consensus 230 el~ 232 (251)
T COG0396 230 ELA 232 (251)
T ss_pred HHH
Confidence 554
No 267
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.92 E-value=1.5e-25 Score=194.23 Aligned_cols=143 Identities=17% Similarity=0.155 Sum_probs=96.5
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-----cccccccee
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-----DTRYGLDSI 125 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-----~~~~~~~~v 125 (280)
||+++|++++|+++.+|+++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-.... ..+..++++
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~ 79 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLL-KLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFV 79 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeeEEECCCccccCHHHHHhheEEe
Confidence 58999999999988999999999999999999999999999999 99999842 222222211110 001112222
Q ss_pred eeecccc----------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH-
Q 023563 126 VTHDGVK----------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE- 168 (280)
Q Consensus 126 ~~~~~~~----------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~- 168 (280)
++..... ...+...++....++. +++++.+|++||||||++..
T Consensus 80 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD 159 (200)
T PRK13540 80 GHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159 (200)
T ss_pred ccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccC
Confidence 2211000 0001111111111111 67899999999999996654
Q ss_pred -----HHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563 169 -----DLYDFCREAADHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 169 -----~i~~~l~~l~~~~g~tviivtHdl~~~~ 196 (280)
.+.+.|++++++ |.|||++||+...+.
T Consensus 160 ~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~ 191 (200)
T PRK13540 160 ELSLLTIITKIQEHRAK-GGAVLLTSHQDLPLN 191 (200)
T ss_pred HHHHHHHHHHHHHHHHc-CCEEEEEeCCchhcc
Confidence 478888888665 999999999999886
No 268
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=6.2e-25 Score=183.89 Aligned_cols=158 Identities=15% Similarity=0.112 Sum_probs=115.1
Q ss_pred cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCcc-------c-
Q 023563 52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKD-------T- 118 (280)
Q Consensus 52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~-------~- 118 (280)
+|+++++++..+. ..+|++|+|.|++||.++|+||||||||||+ .+++|+. ..+..+..+.+... .
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl-~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLL-AVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHH-HHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 7999999998854 5799999999999999999999999999999 9999983 33444444333211 0
Q ss_pred --ccccceeeeeccccccc---------------------------ccccCchHHH--------------HHHhhhhccC
Q 023563 119 --RYGLDSIVTHDGVKLPC---------------------------CALTTLSSFR--------------QKFGSDAYDQ 155 (280)
Q Consensus 119 --~~~~~~v~~~~~~~~~~---------------------------~~~~~l~~~~--------------~~~a~aL~~~ 155 (280)
...++.+||...+.... +...++..-. -..|||++..
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~ 164 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR 164 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence 22345555533221111 0011111100 0116799999
Q ss_pred CCEEEEeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563 156 VDVIGIDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF 221 (280)
Q Consensus 156 p~lLlLDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~ 221 (280)
|++|+.||||- ...+.+++-.+..+.|.|+|+||||...+.+ |+|.+.|.+ +++.
T Consensus 165 P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-----------c~R~~r~~~G~l~~ 226 (228)
T COG4181 165 PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-----------CDRQLRLRSGRLVE 226 (228)
T ss_pred CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-----------hhheeeeecceecc
Confidence 99999999954 4569999999999999999999999999985 999999998 7753
No 269
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.92 E-value=3.2e-25 Score=195.36 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=105.5
Q ss_pred CCCCCccEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCe--------------
Q 023563 46 PKFIHSMVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGR-------------- 107 (280)
Q Consensus 46 ~~~~~~~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~-------------- 107 (280)
+....++|+++|++++|++ ..+|+++||+|++|++++|+||||||||||+ ++|+|+.. ...
T Consensus 5 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~ 83 (226)
T cd03248 5 PDHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVV-ALLENFYQPQGGQVLLDGKPISQYEH 83 (226)
T ss_pred CCCcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCcEEEECCCchHHcCH
Confidence 3345678999999999975 3699999999999999999999999999999 99999832 112
Q ss_pred -----eEEEecCCcccc-cccceeee--eccc-c---ccc---------cccc--CchHHHHHH--------------hh
Q 023563 108 -----NVAVIKSNKDTR-YGLDSIVT--HDGV-K---LPC---------CALT--TLSSFRQKF--------------GS 150 (280)
Q Consensus 108 -----~i~~~~~~~~~~-~~~~~v~~--~~~~-~---~~~---------~~~~--~l~~~~~~~--------------a~ 150 (280)
.+++++|..... ..+...+. .... . ... +... ++.....+. ++
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lar 163 (226)
T cd03248 84 KYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIAR 163 (226)
T ss_pred HHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHH
Confidence 233333332110 00000000 0000 0 000 0000 111111111 57
Q ss_pred hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
+++.+|++||||||+... .+.+.|+++++ +.|+|++|||++++. .||++++|++
T Consensus 164 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~-----------~~d~i~~l~~ 223 (226)
T cd03248 164 ALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLSTVE-----------RADQILVLDG 223 (226)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHH-----------hCCEEEEecC
Confidence 899999999999997654 47788888754 689999999999984 6999999987
No 270
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.92 E-value=2.7e-25 Score=196.63 Aligned_cols=152 Identities=16% Similarity=0.113 Sum_probs=105.4
Q ss_pred eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-----CCeeEEEecCCc---cc-ccccceeeeeccc-cc---
Q 023563 67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-----KGRNVAVIKSNK---DT-RYGLDSIVTHDGV-KL--- 133 (280)
Q Consensus 67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-----~g~~i~~~~~~~---~~-~~~~~~v~~~~~~-~~--- 133 (280)
+++|+||+|++|++++|+||||||||||+ ++|+|+.. ....+.+..... .. +..++++++.... ..
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTC-LAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 57899999999999999999999999999 99999853 233333221110 00 1122333322110 00
Q ss_pred -------------------------ccccccCch---HHHHHH--------------hhhhccCCCEEEEeCcccHH---
Q 023563 134 -------------------------PCCALTTLS---SFRQKF--------------GSDAYDQVDVIGIDEAQFFE--- 168 (280)
Q Consensus 134 -------------------------~~~~~~~l~---~~~~~~--------------a~aL~~~p~lLlLDEP~~~~--- 168 (280)
..+...++. .+.++. |++++.+|++||||||++..
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 001111222 111111 67899999999999997655
Q ss_pred ---HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 169 ---DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 169 ---~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
.+++.|++++++.|+|||++||+++++.. +||++++|++ +++..|+++++.
T Consensus 160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 160 NQARVLKLLRELRQLFGTGILLITHDLGVVAR----------IADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHH
Confidence 47788888876558999999999999976 8999999999 998889888876
No 271
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=3.6e-25 Score=192.25 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=102.5
Q ss_pred EEEcCceEEeCCe-----eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccc
Q 023563 53 VSPRPPLFSLQNR-----NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTR 119 (280)
Q Consensus 53 l~~~~ls~~y~~~-----~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~ 119 (280)
|+++||+++|+++ .+|+++||+|++|++++|+||||||||||+ ++|+|+.. +| .+++++|+....
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl-~~i~G~~~~~~G~i~~~g-~i~~~~q~~~l~ 78 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLL-SALLGELEKLSGSVSVPG-SIAYVSQEPWIQ 78 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHH-HHHhCcCCCCCCeEEEcC-EEEEEecCchhc
Confidence 4789999999764 699999999999999999999999999999 99999732 23 577777764321
Q ss_pred -cccceee--e-e--cccccccccc----------------------cCchHH-HHH--HhhhhccCCCEEEEeCcccHH
Q 023563 120 -YGLDSIV--T-H--DGVKLPCCAL----------------------TTLSSF-RQK--FGSDAYDQVDVIGIDEAQFFE 168 (280)
Q Consensus 120 -~~~~~v~--~-~--~~~~~~~~~~----------------------~~l~~~-~~~--~a~aL~~~p~lLlLDEP~~~~ 168 (280)
..+...+ . . .......... ..++.- ..+ .+++++.+|++||||||++..
T Consensus 79 ~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~L 158 (204)
T cd03250 79 NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAV 158 (204)
T ss_pred cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 0000000 0 0 0000000000 011111 111 167899999999999997655
Q ss_pred H------HHH-HHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 169 D------LYD-FCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 169 ~------i~~-~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
| +++ +++++.++ |.|||++||+++++. .||++++|++
T Consensus 159 D~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~-----------~~d~i~~l~~ 202 (204)
T cd03250 159 DAHVGRHIFENCILGLLLN-NKTRILVTHQLQLLP-----------HADQIVVLDN 202 (204)
T ss_pred CHHHHHHHHHHHHHHhccC-CCEEEEEeCCHHHHh-----------hCCEEEEEeC
Confidence 3 444 34445454 899999999999886 4999999976
No 272
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.92 E-value=4.5e-26 Score=223.63 Aligned_cols=163 Identities=14% Similarity=0.128 Sum_probs=113.0
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe-------------e
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR-------------N 108 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~-------------~ 108 (280)
.++|+++|+++ .+|+|+||+|++|++++|+||||||||||+ ++|+|+.. .|. .
T Consensus 266 ~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 266 APVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELA-ETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred CceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHH-HHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 45899999994 269999999999999999999999999999 99999732 221 2
Q ss_pred EEEecCCcc---cc--cccce-e--e--e------ecc----cccccccccCch-HHHHHH--------------hhhhc
Q 023563 109 VAVIKSNKD---TR--YGLDS-I--V--T------HDG----VKLPCCALTTLS-SFRQKF--------------GSDAY 153 (280)
Q Consensus 109 i~~~~~~~~---~~--~~~~~-v--~--~------~~~----~~~~~~~~~~l~-~~~~~~--------------a~aL~ 153 (280)
++|++|... .. ..+.. + . . ... .....+...++. ...++. |++|+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~ 419 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLE 419 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHh
Confidence 444444311 00 00000 0 0 0 000 000001111221 111111 67899
Q ss_pred cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563 154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~ 226 (280)
.+|++||||||++.+ .++++|++++++ |.|||++|||++++.+ +||++++|++ ++++.|+++
T Consensus 420 ~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tiIivsHd~~~i~~----------~~d~i~~l~~G~i~~~~~~~ 488 (510)
T PRK15439 420 ASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQ----------MADRVLVMHQGEISGALTGA 488 (510)
T ss_pred hCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHH----------hCCEEEEEECCEEEEEEccc
Confidence 999999999997654 488889998876 9999999999999987 9999999999 999888887
Q ss_pred eee
Q 023563 227 FFT 229 (280)
Q Consensus 227 ~~~ 229 (280)
++.
T Consensus 489 ~~~ 491 (510)
T PRK15439 489 AIN 491 (510)
T ss_pred cCC
Confidence 665
No 273
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=9.6e-25 Score=191.54 Aligned_cols=158 Identities=17% Similarity=0.106 Sum_probs=107.3
Q ss_pred EEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC------------eeEE
Q 023563 53 VSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------------RNVA 110 (280)
Q Consensus 53 l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------------~~i~ 110 (280)
|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. +| +.++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLL-LALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 789999999964 4799999999999999999999999999999 99999732 12 1234
Q ss_pred EecCCccccc-ccceeeeec-c----cccccccccCchHHHH-----------------------H--HhhhhccCCCEE
Q 023563 111 VIKSNKDTRY-GLDSIVTHD-G----VKLPCCALTTLSSFRQ-----------------------K--FGSDAYDQVDVI 159 (280)
Q Consensus 111 ~~~~~~~~~~-~~~~v~~~~-~----~~~~~~~~~~l~~~~~-----------------------~--~a~aL~~~p~lL 159 (280)
+++|...... .+...+... . .....+...++.++.. + .+++++.+|++|
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 4443322100 000000000 0 0000011112222221 1 167899999999
Q ss_pred EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
|||||+... .++++|+++.+ +.|||++||+++++. .||++++|++ +++..|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~-----------~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLDTII-----------DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHHh-----------hCCEEEEEECCeEEecCC
Confidence 999996544 47788887753 689999999999885 5999999999 8776654
No 274
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.92 E-value=2.3e-25 Score=242.79 Aligned_cols=174 Identities=18% Similarity=0.145 Sum_probs=124.5
Q ss_pred CCccEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC-----ccccc
Q 023563 49 IHSMVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN-----KDTRY 120 (280)
Q Consensus 49 ~~~~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~-----~~~~~ 120 (280)
..+.|+++||+|.|+ ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-..+ ...+.
T Consensus 925 ~~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLL-kiLaGLl~PtsG~I~i~G~dI~~~~~~~r~ 1003 (2272)
T TIGR01257 925 LVPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTL-SILTGLLPPTSGTVLVGGKDIETNLDAVRQ 1003 (2272)
T ss_pred CCceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHH-HHHhcCCCCCceEEEECCEECcchHHHHhh
Confidence 345899999999995 57899999999999999999999999999999 99999832 22222111100 01122
Q ss_pred ccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563 121 GLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVI 159 (280)
Q Consensus 121 ~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lL 159 (280)
.+++++|+..... ..+...++.+..++. |+||+.+|++|
T Consensus 1004 ~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVL 1083 (2272)
T TIGR01257 1004 SLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVV 1083 (2272)
T ss_pred cEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 2333333221110 011112232222211 67899999999
Q ss_pred EEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeee
Q 023563 160 GIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRK 232 (280)
Q Consensus 160 lLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~ 232 (280)
|||||++. ..++++|++++ + |+|||++||+++++.+ +||||++|++ ++++.|++.++..+.
T Consensus 1084 LLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdmdea~~----------laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1084 VLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHMDEADL----------LGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCHHHHHH----------hCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999765 45889999884 4 9999999999999987 9999999999 999999999887555
Q ss_pred cCC
Q 023563 233 TEE 235 (280)
Q Consensus 233 ~~~ 235 (280)
..+
T Consensus 1152 g~g 1154 (2272)
T TIGR01257 1152 GTG 1154 (2272)
T ss_pred CCc
Confidence 443
No 275
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.92 E-value=2.7e-25 Score=206.66 Aligned_cols=175 Identities=17% Similarity=0.207 Sum_probs=126.1
Q ss_pred CccEEEcCceEEeC----CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---------------------
Q 023563 50 HSMVSPRPPLFSLQ----NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------------------- 104 (280)
Q Consensus 50 ~~~l~~~~ls~~y~----~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------------------- 104 (280)
.++|+++|+++.|. ...++++|||+|.+||.++|+|.||||||-.. +.+.++..
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa-~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTA-LSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHH-HHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 46899999999995 57899999999999999999999999999999 66666521
Q ss_pred --------CCeeEEEecCCcccccc----cc----eee-eeccc--------ccccccccCchHHH---HHH--------
Q 023563 105 --------KGRNVAVIKSNKDTRYG----LD----SIV-THDGV--------KLPCCALTTLSSFR---QKF-------- 148 (280)
Q Consensus 105 --------~g~~i~~~~~~~~~~~~----~~----~v~-~~~~~--------~~~~~~~~~l~~~~---~~~-------- 148 (280)
.|.+|+.++|.+....+ ++ ... -+.+. ..+.+..+++.+-. +.|
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 23344444444322110 00 000 00000 01111222221111 111
Q ss_pred ------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563 149 ------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT 216 (280)
Q Consensus 149 ------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~ 216 (280)
|.||+++|++||.||||+++ +++++|+++.++.|.+++++|||+..+.+ +||||++|.
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~----------~ADrV~VM~ 232 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRK----------FADRVYVMQ 232 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHH----------hhhhEEEEe
Confidence 67899999999999997765 48999999999999999999999999998 999999999
Q ss_pred c-eeccccCcceeeeeecCC
Q 023563 217 A-RCEFCGKRAFFTLRKTEE 235 (280)
Q Consensus 217 ~-~i~~~g~~~~~~~~~~~~ 235 (280)
. +++..|+.+.++..+..+
T Consensus 233 ~G~ivE~~~t~~lF~~PqHp 252 (534)
T COG4172 233 HGEIVETGTTETLFAAPQHP 252 (534)
T ss_pred ccEEeecCcHHHHhhCCCCh
Confidence 9 999999999998554433
No 276
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.92 E-value=7.4e-25 Score=197.12 Aligned_cols=167 Identities=14% Similarity=0.072 Sum_probs=114.6
Q ss_pred CCccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe-----------
Q 023563 49 IHSMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR----------- 107 (280)
Q Consensus 49 ~~~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~----------- 107 (280)
....|+++|++++|++ +.+|+++||+|++|++++|+||||||||||+ ++|+|+.. +|.
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLS-LAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHH-HHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 3457999999999976 5799999999999999999999999999999 99999732 121
Q ss_pred -eEEEecCCccccc-ccceeeeeccc-----ccccccccCchHH-----------------------HHH--HhhhhccC
Q 023563 108 -NVAVIKSNKDTRY-GLDSIVTHDGV-----KLPCCALTTLSSF-----------------------RQK--FGSDAYDQ 155 (280)
Q Consensus 108 -~i~~~~~~~~~~~-~~~~v~~~~~~-----~~~~~~~~~l~~~-----------------------~~~--~a~aL~~~ 155 (280)
.+++++|...... .+...+..... ....+...++..+ ..+ .+++++.+
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 174 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRK 174 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 2344444321100 00000000000 0000000111111 111 16789999
Q ss_pred CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
|++||||||+... .+++.++++. + +.|||++||+++++. .||++++|++ +++..|+++++
T Consensus 175 p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~-----------~~dri~~l~~G~i~~~g~~~~~ 241 (257)
T cd03288 175 SSILIMDEATASIDMATENILQKVVMTAF-A-DRTVVTIAHRVSTIL-----------DADLVLVLSRGILVECDTPENL 241 (257)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChHHHH-----------hCCEEEEEECCEEEEeCCHHHH
Confidence 9999999996643 4677777763 3 899999999999885 5999999999 99999988877
Q ss_pred e
Q 023563 229 T 229 (280)
Q Consensus 229 ~ 229 (280)
.
T Consensus 242 ~ 242 (257)
T cd03288 242 L 242 (257)
T ss_pred H
Confidence 5
No 277
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.92 E-value=6e-25 Score=194.67 Aligned_cols=150 Identities=20% Similarity=0.114 Sum_probs=100.8
Q ss_pred eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeE--------------EEecCCccccc--ccceeee---
Q 023563 68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNV--------------AVIKSNKDTRY--GLDSIVT--- 127 (280)
Q Consensus 68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i--------------~~~~~~~~~~~--~~~~v~~--- 127 (280)
|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+ ++++|...... .+...+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~ 79 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLL-NLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAV 79 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHH
Confidence 5799999999999999999999999999 99999843 22222 22333211100 0000000
Q ss_pred e---ccc--------ccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH------HHHHHHHH
Q 023563 128 H---DGV--------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DLYDFCRE 176 (280)
Q Consensus 128 ~---~~~--------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~ 176 (280)
. ... ....+...++....++. +++|+.+|++||||||++.. .+++.|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 159 (230)
T TIGR01184 80 DRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQ 159 (230)
T ss_pred HhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 0 000 00011112232222211 56899999999999997654 57888888
Q ss_pred HHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 177 AADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 177 l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
++++.|+|||++|||++++.+ +||++++|++ +++..|++.++
T Consensus 160 ~~~~~~~tii~~sH~~~~~~~----------~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 160 IWEEHRVTVLMVTHDVDEALL----------LSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHhcCCEEEEEeCCHHHHHH----------hcCEEEEEeCCcEecccCceec
Confidence 876558999999999999876 9999999999 88888876655
No 278
>PRK13409 putative ATPase RIL; Provisional
Probab=99.92 E-value=6.8e-25 Score=218.42 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=118.2
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-C-C-----eeEEEecCCcccccc-
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-K-G-----RNVAVIKSNKDTRYG- 121 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~-g-----~~i~~~~~~~~~~~~- 121 (280)
.++|+++|++++|++. .|+++||+|++||+++|+||||||||||+ ++|+|+.. . | ..++|++|+......
T Consensus 338 ~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLl-k~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~ 415 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFA-KLLAGVLKPDEGEVDPELKISYKPQYIKPDYDG 415 (590)
T ss_pred ceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEEeeeEEEecccccCCCCC
Confidence 4689999999999875 49999999999999999999999999999 99999843 1 2 245677776432111
Q ss_pred -cceeeee--cc-----cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH------HHHHH
Q 023563 122 -LDSIVTH--DG-----VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DLYDF 173 (280)
Q Consensus 122 -~~~v~~~--~~-----~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i~~~ 173 (280)
+...+.. .. .....+...++....++. |++|+.+|++||||||++.+ .++++
T Consensus 416 tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~ 495 (590)
T PRK13409 416 TVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKA 495 (590)
T ss_pred cHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 1110000 00 001112223333333222 67899999999999997654 57888
Q ss_pred HHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccC
Q 023563 174 CREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGK 224 (280)
Q Consensus 174 l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~ 224 (280)
|++++++.|.|||++|||++++.+ +||++++|++++...|.
T Consensus 496 l~~l~~~~g~tviivsHD~~~~~~----------~aDrvivl~~~~~~~g~ 536 (590)
T PRK13409 496 IRRIAEEREATALVVDHDIYMIDY----------ISDRLMVFEGEPGKHGH 536 (590)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHH----------hCCEEEEEcCcceeeee
Confidence 999987669999999999999986 99999999886555555
No 279
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.92 E-value=1.7e-25 Score=222.34 Aligned_cols=164 Identities=16% Similarity=0.139 Sum_probs=115.0
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV 109 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i 109 (280)
-|+++||+++|++ +.+|+|+||+|++|+.++|+||||||||||+ ++|.|+.. +|. .+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl-~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 419 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIA-NLLTRFYDIDEGEILLDGHDLRDYTLASLRNQV 419 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHH-HHHHhccCCCCceEEECCEEhhhcCHHHHHhhc
Confidence 4999999999964 6799999999999999999999999999999 99999732 222 23
Q ss_pred EEecCCccc-----cccccee-ee--ecccccccccccCchHHH-----------------------HHH--hhhhccCC
Q 023563 110 AVIKSNKDT-----RYGLDSI-VT--HDGVKLPCCALTTLSSFR-----------------------QKF--GSDAYDQV 156 (280)
Q Consensus 110 ~~~~~~~~~-----~~~~~~v-~~--~~~~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p 156 (280)
++++|+... +.++... .. .+.....++...++.++. +|. ||+++.+|
T Consensus 420 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~ 499 (582)
T PRK11176 420 ALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_pred eEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 444444221 0001000 00 000000011111222211 111 68999999
Q ss_pred CEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++|||||||+..| +++.|.++.+ ++|+|+|||+++.+. .||+|++|++ ++++.|+.+++.
T Consensus 500 ~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~~~~~-----------~~D~Ii~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 500 PILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIE-----------KADEILVVEDGEIVERGTHAELL 566 (582)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-----------hCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999987754 6677766643 799999999998876 7999999999 999999998876
No 280
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.92 E-value=3.7e-25 Score=220.21 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=114.6
Q ss_pred cEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCe-------------------eEEE
Q 023563 52 MVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGR-------------------NVAV 111 (280)
Q Consensus 52 ~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~-------------------~i~~ 111 (280)
-|+++||++.| +++++|+|+||+|++|+.++|+||||||||||+ ++|.|+..... .+++
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~-~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLL-NALLGFLPYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCcEEEECCEecccCCHHHHHhheEE
Confidence 49999999755 567899999999999999999999999999999 99999753222 2344
Q ss_pred ecCCccc-----ccccceeee--ecccccccccccCchHHH-----------------------HHH--hhhhccCCCEE
Q 023563 112 IKSNKDT-----RYGLDSIVT--HDGVKLPCCALTTLSSFR-----------------------QKF--GSDAYDQVDVI 159 (280)
Q Consensus 112 ~~~~~~~-----~~~~~~v~~--~~~~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p~lL 159 (280)
++|++.. +.++...-. .+.....++...++.++. +|. |||++.+|++|
T Consensus 428 v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~Il 507 (588)
T PRK11174 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLL 507 (588)
T ss_pred ecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 4444321 000000000 000000011111222111 111 78999999999
Q ss_pred EEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 160 GIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 160 lLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||||+..| +.+.|.++.+ ++|+|++||+++.+. .||+|++|++ ++++.|+.+++.
T Consensus 508 iLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIiItHrl~~i~-----------~aD~Iivl~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 508 LLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQLEDLA-----------QWDQIWVMQDGQIVQQGDYAELS 571 (588)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecChHHHH-----------hCCEEEEEeCCeEeecCCHHHHH
Confidence 9999987654 6677777653 899999999999886 6999999999 999999998886
No 281
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.92 E-value=1e-24 Score=202.77 Aligned_cols=174 Identities=14% Similarity=0.086 Sum_probs=128.0
Q ss_pred CCCccEEEcCceEEeC-----------CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc
Q 023563 48 FIHSMVSPRPPLFSLQ-----------NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK 116 (280)
Q Consensus 48 ~~~~~l~~~~ls~~y~-----------~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~ 116 (280)
...++++.+++.+.|. ...++++|||++++||.+||+|.||||||||- +.|.++......|.|..+..
T Consensus 272 ~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG-~allrL~~s~G~I~F~G~~i 350 (534)
T COG4172 272 DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLG-LALLRLIPSQGEIRFDGQDI 350 (534)
T ss_pred CCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHH-HHHHhhcCcCceEEECCccc
Confidence 3456899999999883 14689999999999999999999999999999 88887754444444443332
Q ss_pred cc---------ccccceeeeeccc-ccc------------------------------cccccCch-------------H
Q 023563 117 DT---------RYGLDSIVTHDGV-KLP------------------------------CCALTTLS-------------S 143 (280)
Q Consensus 117 ~~---------~~~~~~v~~~~~~-~~~------------------------------~~~~~~l~-------------~ 143 (280)
.. |..+..+||...- +.+ ++..++++ .
T Consensus 351 ~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGG 430 (534)
T COG4172 351 DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGG 430 (534)
T ss_pred cccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcc
Confidence 21 2223334431110 000 11111211 0
Q ss_pred HHHHH--hhhhccCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563 144 FRQKF--GSDAYDQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL 215 (280)
Q Consensus 144 ~~~~~--a~aL~~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L 215 (280)
.+.+. |||++.+|++++|||||+.+| ++++|+++.+++|.+.+|+|||+..+.. +||+|++|
T Consensus 431 QRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrA----------l~~~viVm 500 (534)
T COG4172 431 QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRA----------LCHRVIVM 500 (534)
T ss_pred hhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHH----------hhceEEEE
Confidence 11111 689999999999999988764 8999999999999999999999999986 99999999
Q ss_pred ec-eeccccCcceeeeee
Q 023563 216 TA-RCEFCGKRAFFTLRK 232 (280)
Q Consensus 216 ~~-~i~~~g~~~~~~~~~ 232 (280)
++ +++..|+.++++..+
T Consensus 501 ~~GkiVE~G~~~~if~~P 518 (534)
T COG4172 501 RDGKIVEQGPTEAVFANP 518 (534)
T ss_pred eCCEEeeeCCHHHHhcCC
Confidence 99 999999999999544
No 282
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.92 E-value=6.2e-25 Score=222.42 Aligned_cols=162 Identities=20% Similarity=0.166 Sum_probs=112.6
Q ss_pred cEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563 52 MVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV 109 (280)
Q Consensus 52 ~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i 109 (280)
-|+++||+++|+ ++++|+|+||+|++||.++|+||||||||||+ ++|.|+.. +|. .+
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl-klL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLL-RLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 599999999995 36799999999999999999999999999999 99999732 333 23
Q ss_pred EEecCCcccc-----cccceee-eecccccccccccCchHHH-----------------------HHH--hhhhccCCCE
Q 023563 110 AVIKSNKDTR-----YGLDSIV-THDGVKLPCCALTTLSSFR-----------------------QKF--GSDAYDQVDV 158 (280)
Q Consensus 110 ~~~~~~~~~~-----~~~~~v~-~~~~~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p~l 158 (280)
++++|+...- .++...- ..+.....++...++.++. ++. |||++.+|++
T Consensus 530 ~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~i 609 (686)
T TIGR03797 530 GVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI 609 (686)
T ss_pred EEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4444443210 0000000 0000000111111222221 111 7899999999
Q ss_pred EEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||||||+..| +.+.|+++ ++|+|++||+++.+. .||+|++|++ ++++.|+.+++.
T Consensus 610 LiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~-----------~~D~Iivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 610 LLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIR-----------NADRIYVLDAGRVVQQGTYDELM 672 (686)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHH-----------cCCEEEEEECCEEEEECCHHHHH
Confidence 99999988654 44444332 689999999999886 6999999999 999999998876
No 283
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.92 E-value=1.5e-25 Score=219.30 Aligned_cols=163 Identities=13% Similarity=0.117 Sum_probs=112.7
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee--------------------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN-------------------- 108 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~-------------------- 108 (280)
.++|+++|+++ .+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....
T Consensus 255 ~~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl-~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 255 EVRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELM-KVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred CcEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 35899999985 379999999999999999999999999999 99999732 1222
Q ss_pred EEEecCCcc---cc--cccceeee---e---c---c---------cccccccccCch-HHHHH--------------Hhh
Q 023563 109 VAVIKSNKD---TR--YGLDSIVT---H---D---G---------VKLPCCALTTLS-SFRQK--------------FGS 150 (280)
Q Consensus 109 i~~~~~~~~---~~--~~~~~v~~---~---~---~---------~~~~~~~~~~l~-~~~~~--------------~a~ 150 (280)
++|++|... .. ..+...+. . . . .....+...++. ...++ +|+
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~ 408 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIAR 408 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHH
Confidence 344444321 00 00000000 0 0 0 000001111221 11111 167
Q ss_pred hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
+|+.+|++||||||++.+ .++++|++++++ |.|||++|||++++.+ +||++++|++ +++..|
T Consensus 409 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~~~~~----------~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 409 GLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLG----------MSDRILVMHEGRISGEF 477 (501)
T ss_pred HHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHh----------hCCEEEEEECCEEEEEe
Confidence 899999999999997654 588999998876 9999999999999986 9999999999 888888
Q ss_pred Ccceee
Q 023563 224 KRAFFT 229 (280)
Q Consensus 224 ~~~~~~ 229 (280)
+++++.
T Consensus 478 ~~~~~~ 483 (501)
T PRK10762 478 TREQAT 483 (501)
T ss_pred ccccCC
Confidence 877654
No 284
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.9e-25 Score=216.77 Aligned_cols=163 Identities=15% Similarity=0.159 Sum_probs=110.6
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCee-------------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRN------------- 108 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~------------- 108 (280)
.++|+++|++++| +.+|+++||+|++||+++|+||||||||||+ ++|.|+.. .|.+
T Consensus 248 ~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 248 EVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIV-ETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred CcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHH-HHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 3589999999984 4699999999999999999999999999999 99999732 2222
Q ss_pred EEEecCCccc----c-cccc--eeeeec-------ccc---------cccccccCch-HHHHH--------------Hhh
Q 023563 109 VAVIKSNKDT----R-YGLD--SIVTHD-------GVK---------LPCCALTTLS-SFRQK--------------FGS 150 (280)
Q Consensus 109 i~~~~~~~~~----~-~~~~--~v~~~~-------~~~---------~~~~~~~~l~-~~~~~--------------~a~ 150 (280)
+++++|.... . ..+. .+.... +.. ...+...++. ...++ .|+
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 404 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGR 404 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHH
Confidence 2233332110 0 0000 000000 000 0000001110 00011 167
Q ss_pred hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
+++.+|++|||||||+.. .++++|.++.++ |.|||++|||++++.+ +||++++|++ +++..+
T Consensus 405 al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~----------~~d~v~~l~~g~i~~~~ 473 (491)
T PRK10982 405 WLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLG----------ITDRILVMSNGLVAGIV 473 (491)
T ss_pred HHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC-CCEEEEECCChHHHHh----------hCCEEEEEECCEEEEEE
Confidence 899999999999997654 478888888876 9999999999999986 9999999998 887666
Q ss_pred Ccc
Q 023563 224 KRA 226 (280)
Q Consensus 224 ~~~ 226 (280)
++.
T Consensus 474 ~~~ 476 (491)
T PRK10982 474 DTK 476 (491)
T ss_pred ccc
Confidence 554
No 285
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.92 E-value=3.2e-25 Score=224.74 Aligned_cols=164 Identities=20% Similarity=0.236 Sum_probs=115.6
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV 109 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i 109 (280)
-|+++||+++|++ +++|+|+||+|++||.++|+||||||||||+ ++|.|+.. +|. .+
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLl-klL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLL-KLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 5999999999963 5699999999999999999999999999999 99999732 222 34
Q ss_pred EEecCCccc-----ccccceeee--ecccccccccccCchHH-----------------------HHHH--hhhhccCCC
Q 023563 110 AVIKSNKDT-----RYGLDSIVT--HDGVKLPCCALTTLSSF-----------------------RQKF--GSDAYDQVD 157 (280)
Q Consensus 110 ~~~~~~~~~-----~~~~~~v~~--~~~~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p~ 157 (280)
++++|+... +.++...-. .+.....++...++.++ +++. |||++.+|+
T Consensus 542 ~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ 621 (694)
T TIGR03375 542 GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP 621 (694)
T ss_pred EEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 444444321 000000000 00000000111111111 1221 789999999
Q ss_pred EEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+|||||||+..| +.+.|.++.+ ++|+|++||+++.+. .||+|++|++ +++..|+.+++.
T Consensus 622 iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl~~~~-----------~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 622 ILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLLD-----------LVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-----------hCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999987653 6777777653 899999999999886 7999999999 999999999886
No 286
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.92 E-value=1.1e-24 Score=215.58 Aligned_cols=168 Identities=15% Similarity=0.127 Sum_probs=113.6
Q ss_pred ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C-------CeeEEEecCCccccc
Q 023563 51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K-------GRNVAVIKSNKDTRY 120 (280)
Q Consensus 51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~-------g~~i~~~~~~~~~~~ 120 (280)
+||+++||+++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. . ...+++++|......
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl-~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLL-RIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 4899999999998 78899999999999999999999999999999 99999732 1 235777777643211
Q ss_pred --ccceeee----e-----------------cccc---------------------------cccccccCch--------
Q 023563 121 --GLDSIVT----H-----------------DGVK---------------------------LPCCALTTLS-------- 142 (280)
Q Consensus 121 --~~~~v~~----~-----------------~~~~---------------------------~~~~~~~~l~-------- 142 (280)
.+...+. . .... ...+...++.
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 161 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTK 161 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhh
Confidence 1100000 0 0000 0000000110
Q ss_pred ---HHHHH--HhhhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563 143 ---SFRQK--FGSDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL 215 (280)
Q Consensus 143 ---~~~~~--~a~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L 215 (280)
....+ .|++|+.+|++||||||++.+|. .+.+.++..+.+.|||++|||++++.+ +||++++|
T Consensus 162 LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~----------~~d~v~~l 231 (552)
T TIGR03719 162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDN----------VAGWILEL 231 (552)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHh----------hcCeEEEE
Confidence 00111 16789999999999999877641 222333322335699999999999986 99999999
Q ss_pred ec-eec-cccCcceee
Q 023563 216 TA-RCE-FCGKRAFFT 229 (280)
Q Consensus 216 ~~-~i~-~~g~~~~~~ 229 (280)
++ +++ +.|+.+++.
T Consensus 232 ~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 232 DRGRGIPWEGNYSSWL 247 (552)
T ss_pred ECCEEEEecCCHHHHH
Confidence 98 754 678877644
No 287
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.92 E-value=2.4e-25 Score=226.14 Aligned_cols=162 Identities=21% Similarity=0.209 Sum_probs=113.4
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC------------eeE
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------------RNV 109 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------------~~i 109 (280)
.|+++||+++|++ +++|+|+||+|++||.++|+||||||||||+ ++|.|+.. +| +.+
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl-klL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIA-KLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 5999999999964 6799999999999999999999999999999 99999732 22 234
Q ss_pred EEecCCccc-----ccccceeee--ecccccccccccCchHH-----------------------HHHH--hhhhccCCC
Q 023563 110 AVIKSNKDT-----RYGLDSIVT--HDGVKLPCCALTTLSSF-----------------------RQKF--GSDAYDQVD 157 (280)
Q Consensus 110 ~~~~~~~~~-----~~~~~~v~~--~~~~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p~ 157 (280)
++++|+... +.++...-. .+.....++...++.++ +++. |||++.+|+
T Consensus 556 ~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~ 635 (710)
T TIGR03796 556 AMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPS 635 (710)
T ss_pred eEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 455554321 000100000 00000000111111111 1121 789999999
Q ss_pred EEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+|||||||+..| +++.|+ + .++|+|++||+++.+. .||+|++|++ +++..|+.+++.
T Consensus 636 iliLDEptS~LD~~te~~i~~~l~---~-~~~T~IiitHrl~~i~-----------~~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 636 ILILDEATSALDPETEKIIDDNLR---R-RGCTCIIVAHRLSTIR-----------DCDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred EEEEECccccCCHHHHHHHHHHHH---h-cCCEEEEEecCHHHHH-----------hCCEEEEEeCCEEEEecCHHHHH
Confidence 999999988764 444443 3 4899999999999886 6999999999 999999999887
No 288
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.92 E-value=4.4e-25 Score=216.12 Aligned_cols=164 Identities=18% Similarity=0.156 Sum_probs=112.3
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee--------------------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN-------------------- 108 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~-------------------- 108 (280)
.+.++++|++.. .+++|+||+|++|++++|+||||||||||+ ++|+|+.. ....
T Consensus 255 ~~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl-k~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 255 EVRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELM-KLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred CcEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHH-HHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 347999999842 489999999999999999999999999999 99999732 2222
Q ss_pred EEEecCCcc--ccc---ccce-eee--ec-----c----------cccccccccCch-HHHHH--------------Hhh
Q 023563 109 VAVIKSNKD--TRY---GLDS-IVT--HD-----G----------VKLPCCALTTLS-SFRQK--------------FGS 150 (280)
Q Consensus 109 i~~~~~~~~--~~~---~~~~-v~~--~~-----~----------~~~~~~~~~~l~-~~~~~--------------~a~ 150 (280)
+++++|... ..+ .+.. +.. .. + .....+...++. +..++ .|+
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~ 409 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR 409 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence 233333321 000 0000 000 00 0 000001111110 11111 156
Q ss_pred hhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
+++.+|++||||||++.+ +++++|.+++++ |.|||++|||++++.+ +||++++|++ ++++.|
T Consensus 410 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~----------~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLG----------VADRIVVMREGRIAGEL 478 (501)
T ss_pred HHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHh----------hCCEEEEEECCEEEEEE
Confidence 899999999999997654 588888998876 9999999999999987 9999999999 999998
Q ss_pred Ccceee
Q 023563 224 KRAFFT 229 (280)
Q Consensus 224 ~~~~~~ 229 (280)
+++++.
T Consensus 479 ~~~~~~ 484 (501)
T PRK11288 479 AREQAT 484 (501)
T ss_pred ccccCC
Confidence 887765
No 289
>PTZ00293 thymidine kinase; Provisional
Probab=99.92 E-value=4.9e-24 Score=185.71 Aligned_cols=174 Identities=46% Similarity=0.765 Sum_probs=152.1
Q ss_pred eCceEEEEEcCCCCcHHH-HHHHHHhcchhCCeeEEEecCCccccc-ccceeeeecccccccccccCchHHHHHHhhhhc
Q 023563 76 PSGEIHVIVGPMFAGKTT-TLLRRIQAETQKGRNVAVIKSNKDTRY-GLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAY 153 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKST-Ll~~~l~gl~~~g~~i~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~ 153 (280)
..|.+..+.||+|||||| || +.+..+...|+++..+.+..+.|+ ....+..+.+...++....++.++...+
T Consensus 2 ~~G~i~vi~GpMfSGKTteLL-r~i~~y~~ag~kv~~~kp~~DtR~~~~~~I~Sh~g~~~~a~~v~~~~e~~~~~----- 75 (211)
T PTZ00293 2 YRGTISVIIGPMFSGKTTELM-RLVKRFTYSEKKCVVIKYSKDTRYSDEQNISSHDKQMLKAIKVSKLKEVLETA----- 75 (211)
T ss_pred CceEEEEEECCCCChHHHHHH-HHHHHHHHcCCceEEEEecccccCCCCCcEEecCCCcceeEEcCCHHHHHHhc-----
Confidence 368999999999999999 66 889999899999999999888887 5556777777766666666666665432
Q ss_pred cCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeec
Q 023563 154 DQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKT 233 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~ 233 (280)
.++++|++||.+|..++.+++..+++. |+.||+.++|.++-.++|+++.+|+++||+|.-|+..|..||.++.+..|..
T Consensus 76 ~~~dvI~IDEaQFf~~i~~~~~~l~~~-g~~VivaGLd~Df~~~~F~~~~~Ll~~AD~V~kl~aiC~~CG~~A~~t~R~~ 154 (211)
T PTZ00293 76 KNYDVIAIDEGQFFPDLVEFSEAAANL-GKIVIVAALDGTFQRKPFGQILNLIPLAERVTKLTAVCMFCGKEASFSKRIV 154 (211)
T ss_pred cCCCEEEEEchHhhHhHHHHHHHHHHC-CCeEEEEecCcccccCcCccHHHHHHhhCEEEEcceEchhhCCcceeEEEEc
Confidence 578999999999988899998888875 9999999999999999999999999999999999999988999999999988
Q ss_pred CCCcEEEeCCccceeeeccchhc
Q 023563 234 EETKTELIGGSDIYMPVCRQHYV 256 (280)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~ 256 (280)
++....++|+.+.|.++||+||.
T Consensus 155 ~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 155 QSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred CCCCEEEECCcccEEehhhhhhh
Confidence 87777789999999999999994
No 290
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.91 E-value=5.2e-25 Score=219.45 Aligned_cols=164 Identities=14% Similarity=0.117 Sum_probs=116.2
Q ss_pred cEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC------------eeEE
Q 023563 52 MVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------------RNVA 110 (280)
Q Consensus 52 ~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------------~~i~ 110 (280)
-|+++|++++|++ +.+|+|+||+|++||.++|+|+||||||||+ ++|.|+.. +| +.++
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl-~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLA-SLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 4899999999964 6799999999999999999999999999999 99999732 22 2344
Q ss_pred EecCCccc-----ccccceeee-ecccccccccccCchHH-----------------------HHHH--hhhhccCCCEE
Q 023563 111 VIKSNKDT-----RYGLDSIVT-HDGVKLPCCALTTLSSF-----------------------RQKF--GSDAYDQVDVI 159 (280)
Q Consensus 111 ~~~~~~~~-----~~~~~~v~~-~~~~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p~lL 159 (280)
+++|+... +.++...-. .+.....++...++.++ ++|. ||||+.+|++|
T Consensus 419 ~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~il 498 (592)
T PRK10790 419 MVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQIL 498 (592)
T ss_pred EEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 55554321 111100000 00000011111122111 1222 78999999999
Q ss_pred EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||||++.. .+.+.|+++.+ ++|+|++||+++... .||+|++|++ ++++.|+++++.
T Consensus 499 llDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~~l~-----------~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 499 ILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLSTIV-----------EADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-----------hCCEEEEEECCEEEEEcCHHHHH
Confidence 999997764 36777777654 799999999998876 6999999999 999999999886
No 291
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=8.6e-24 Score=176.32 Aligned_cols=141 Identities=25% Similarity=0.281 Sum_probs=104.0
Q ss_pred EcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcc------cccccceeee
Q 023563 55 PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKD------TRYGLDSIVT 127 (280)
Q Consensus 55 ~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~------~~~~~~~v~~ 127 (280)
++|+++.|.++.+++++||+|++|++++|+||||||||||+ ++|.|+.. ....+.+-..... .+..+.++++
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll-~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLL-RAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence 67899999888999999999999999999999999999999 99999743 2333332221110 0112222322
Q ss_pred ecccccccccccCchHHHHHHhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCC
Q 023563 128 HDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGS 201 (280)
Q Consensus 128 ~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~ 201 (280)
+..=...+-..+++++.+|++++||||+.. ..+.+.+.++.+. +.|++++||+++++..
T Consensus 81 ----------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~---- 145 (157)
T cd00267 81 ----------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAEL---- 145 (157)
T ss_pred ----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----
Confidence 111111222347899999999999999654 4578888888775 8999999999999986
Q ss_pred ccccccccceEEEeec
Q 023563 202 VIDIIPLADSVTKLTA 217 (280)
Q Consensus 202 ~~~ll~~aD~i~~L~~ 217 (280)
+||+++.|++
T Consensus 146 ------~~d~i~~l~~ 155 (157)
T cd00267 146 ------AADRVIVLKD 155 (157)
T ss_pred ------hCCEEEEEeC
Confidence 8999999875
No 292
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3e-25 Score=212.45 Aligned_cols=164 Identities=17% Similarity=0.176 Sum_probs=119.4
Q ss_pred cEEEcCceEEeCCe--eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCeeEEEecCCcccccc
Q 023563 52 MVSPRPPLFSLQNR--NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRNVAVIKSNKDTRYG 121 (280)
Q Consensus 52 ~l~~~~ls~~y~~~--~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~i~~~~~~~~~~~~ 121 (280)
.++++||+|+|.+. ++|+|+||++++||.++|+|++|||||||+ .++.|. ..+|.++..+++. ..+..
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTll-qLl~~~~~~~~G~i~~~g~~~~~l~~~-~~~e~ 413 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLL-QLLAGAWDPQQGSITLNGVEIASLDEQ-ALRET 413 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHH-HHHHhccCCCCCeeeECCcChhhCChh-hHHHH
Confidence 79999999999764 599999999999999999999999999999 999984 3344444333221 11122
Q ss_pred cceeeee---------cccc-----------cccccccCchHHHHHH-------------------------hhhhccCC
Q 023563 122 LDSIVTH---------DGVK-----------LPCCALTTLSSFRQKF-------------------------GSDAYDQV 156 (280)
Q Consensus 122 ~~~v~~~---------~~~~-----------~~~~~~~~l~~~~~~~-------------------------a~aL~~~p 156 (280)
+..+.|+ ++.. ..++...++.++.... ||+|.++.
T Consensus 414 i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~da 493 (573)
T COG4987 414 ISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA 493 (573)
T ss_pred HhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCC
Confidence 2222221 1111 1112223333333211 56899999
Q ss_pred CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+++||||||..+ ++++.+.+.++ |+|+|||||++-.+. .||+|++|++ +++..|++.+++
T Consensus 494 pl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le-----------~~drIivl~~Gkiie~G~~~~Ll 560 (573)
T COG4987 494 PLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLE-----------RMDRIIVLDNGKIIEEGTHAELL 560 (573)
T ss_pred CeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHh-----------hcCEEEEEECCeeeecCCHHhhh
Confidence 999999997654 58888877765 899999999999887 6999999999 999999999988
Q ss_pred e
Q 023563 230 L 230 (280)
Q Consensus 230 ~ 230 (280)
.
T Consensus 561 ~ 561 (573)
T COG4987 561 A 561 (573)
T ss_pred c
Confidence 3
No 293
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.91 E-value=5e-25 Score=223.84 Aligned_cols=163 Identities=15% Similarity=0.112 Sum_probs=114.7
Q ss_pred cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eEE
Q 023563 52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NVA 110 (280)
Q Consensus 52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i~ 110 (280)
-|+++||+++|+ ++++|+|+||+|++|+.++|+||||||||||+ ++|.|+.. +|. .++
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLl-klL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLA-KLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHH-HHHhccCCCCCcEEEECCEEHHHcCHHHHHHheE
Confidence 599999999996 46899999999999999999999999999999 99999732 222 345
Q ss_pred EecCCcccc-----cccceeeee---cccccccccccCchHH-----------------------HHHH--hhhhccCCC
Q 023563 111 VIKSNKDTR-----YGLDSIVTH---DGVKLPCCALTTLSSF-----------------------RQKF--GSDAYDQVD 157 (280)
Q Consensus 111 ~~~~~~~~~-----~~~~~v~~~---~~~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p~ 157 (280)
+++|+...- .++...... +.....+....++.++ +++. |||++.+|+
T Consensus 552 ~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~ 631 (708)
T TIGR01193 552 YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSK 631 (708)
T ss_pred EEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 555543210 000000000 0000000111111111 1111 789999999
Q ss_pred EEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+|||||||+..| +.+.|+++ + |+|+|++||+++.+. .||+|++|++ +++..|+.+++.
T Consensus 632 iliLDE~Ts~LD~~te~~i~~~L~~~--~-~~T~IiitHr~~~~~-----------~~D~i~~l~~G~i~~~G~~~~L~ 696 (708)
T TIGR01193 632 VLILDESTSNLDTITEKKIVNNLLNL--Q-DKTIIFVAHRLSVAK-----------QSDKIIVLDHGKIIEQGSHDELL 696 (708)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh--c-CCEEEEEecchHHHH-----------cCCEEEEEECCEEEEECCHHHHH
Confidence 999999987653 66666653 2 899999999999875 7999999999 999999998886
No 294
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.91 E-value=2.1e-24 Score=216.93 Aligned_cols=166 Identities=17% Similarity=0.218 Sum_probs=111.2
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee--------EEEecCCccccccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN--------VAVIKSNKDTRYGL 122 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~--------i~~~~~~~~~~~~~ 122 (280)
||+++||+++|+++.+|+||||+|++|+++||+||||||||||+ ++|+|+.. .... +++++|.... ...
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLL-riiaG~~~p~~G~I~~~~~~~~~~l~q~~~~-~~~ 80 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLM-KILNGEVLLDDGRIIYEQDLIVARLQQDPPR-NVE 80 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCeEEEeCCCCEEEEeccCCCC-CCC
Confidence 79999999999999999999999999999999999999999999 99999832 2222 3344432211 111
Q ss_pred ceeeeec---------------------------cc----------------------ccccccccCch----------H
Q 023563 123 DSIVTHD---------------------------GV----------------------KLPCCALTTLS----------S 143 (280)
Q Consensus 123 ~~v~~~~---------------------------~~----------------------~~~~~~~~~l~----------~ 143 (280)
..+++.. .. ....+...++. .
T Consensus 81 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgG 160 (635)
T PRK11147 81 GTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGG 160 (635)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHH
Confidence 1111100 00 00000000110 0
Q ss_pred HHHH--HhhhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-e
Q 023563 144 FRQK--FGSDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-R 218 (280)
Q Consensus 144 ~~~~--~a~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~ 218 (280)
...+ +|++|+.+|++|||||||+.+|. .+.|.++..+.+.|||+||||.+++.+ +||+|++|++ +
T Consensus 161 ekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~----------~~d~i~~L~~G~ 230 (635)
T PRK11147 161 WLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRN----------MATRIVDLDRGK 230 (635)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH----------hcCeEEEEECCE
Confidence 0011 16789999999999999988752 333444443345799999999999987 9999999999 7
Q ss_pred ec-cccCcceee
Q 023563 219 CE-FCGKRAFFT 229 (280)
Q Consensus 219 i~-~~g~~~~~~ 229 (280)
++ +.|+.+++.
T Consensus 231 i~~~~g~~~~~~ 242 (635)
T PRK11147 231 LVSYPGNYDQYL 242 (635)
T ss_pred EEEecCCHHHHH
Confidence 75 457765543
No 295
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.91 E-value=1.8e-24 Score=211.83 Aligned_cols=167 Identities=22% Similarity=0.272 Sum_probs=117.8
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---------CCeeEEEecCCcccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---------KGRNVAVIKSNKDTRYG 121 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---------~g~~i~~~~~~~~~~~~ 121 (280)
.+|.++|++++|+++.+|+++||+|.+|+.+||||+||||||||| ++|+|... .+..++++.|+......
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLL-kilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~ 80 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLL-KILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPE 80 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHH-HHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCC
Confidence 379999999999999999999999999999999999999999999 99999632 34478888887654321
Q ss_pred --c-ceeeeec-----------cccc------------------------------ccc----------cccCch---HH
Q 023563 122 --L-DSIVTHD-----------GVKL------------------------------PCC----------ALTTLS---SF 144 (280)
Q Consensus 122 --~-~~v~~~~-----------~~~~------------------------------~~~----------~~~~l~---~~ 144 (280)
+ ..++.-. .... ..+ ....++ ..
T Consensus 81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~ 160 (530)
T COG0488 81 KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRR 160 (530)
T ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHH
Confidence 1 0111000 0000 000 000111 11
Q ss_pred HHHHhhhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee-c
Q 023563 145 RQKFGSDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC-E 220 (280)
Q Consensus 145 ~~~~a~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i-~ 220 (280)
+-..|++|+.+|++|||||||+.+|+ ++.|.+...+...|+|+||||-++..+ +|++|+.++. .+ .
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~----------V~t~I~~ld~g~l~~ 230 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDN----------VATHILELDRGKLTP 230 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHH----------HhhheEEecCCceeE
Confidence 11126789999999999999999874 566666654433399999999999997 9999999998 43 3
Q ss_pred cccCccee
Q 023563 221 FCGKRAFF 228 (280)
Q Consensus 221 ~~g~~~~~ 228 (280)
+.|.-+.+
T Consensus 231 y~Gny~~~ 238 (530)
T COG0488 231 YKGNYSSY 238 (530)
T ss_pred ecCCHHHH
Confidence 44544433
No 296
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.91 E-value=1.1e-24 Score=215.32 Aligned_cols=165 Identities=18% Similarity=0.193 Sum_probs=114.5
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV 109 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i 109 (280)
.++++|++++|++ +.+|+|+||+|++|+.++|+||||||||||+ +++.|+.. +|. .+
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~-~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLA-RLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 5999999999953 5799999999999999999999999999999 99999732 222 24
Q ss_pred EEecCCccccc-ccceee--eecc----cccccccccCchHH-----------------------HHHH--hhhhccCCC
Q 023563 110 AVIKSNKDTRY-GLDSIV--THDG----VKLPCCALTTLSSF-----------------------RQKF--GSDAYDQVD 157 (280)
Q Consensus 110 ~~~~~~~~~~~-~~~~v~--~~~~----~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p~ 157 (280)
++++|+...-. .+...+ .... .....+...++.++ ++|. |||++.+|+
T Consensus 395 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ 474 (544)
T TIGR01842 395 GYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK 474 (544)
T ss_pred EEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence 44444432100 000000 0000 00000011111111 1111 689999999
Q ss_pred EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+||||||++.. .+.+.|+++..+ |+|+|++||+++.+. .||+|++|++ +++..|+++++.
T Consensus 475 ililDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~ith~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 475 LVVLDEPNSNLDEEGEQALANAIKALKAR-GITVVVITHRPSLLG-----------CVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHhhC-CCEEEEEeCCHHHHH-----------hCCEEEEEECCEEEeeCCHHHHh
Confidence 99999998765 367777777643 899999999998764 7999999999 999999987765
No 297
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.91 E-value=9.3e-25 Score=217.51 Aligned_cols=164 Identities=23% Similarity=0.234 Sum_probs=114.6
Q ss_pred cEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC------------eeEE
Q 023563 52 MVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------------RNVA 110 (280)
Q Consensus 52 ~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------------~~i~ 110 (280)
.|+++|++++|++ +.+|+|+||++++|++++|+||||||||||+ ++|.|+.. +| +.++
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl-~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLI-NLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 5999999999965 6799999999999999999999999999999 99999733 22 2345
Q ss_pred EecCCccc-----ccccceeeee--cccccccccccCchHH-----------------------HHHH--hhhhccCCCE
Q 023563 111 VIKSNKDT-----RYGLDSIVTH--DGVKLPCCALTTLSSF-----------------------RQKF--GSDAYDQVDV 158 (280)
Q Consensus 111 ~~~~~~~~-----~~~~~~v~~~--~~~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p~l 158 (280)
+++|+... +.++...-.. +.....++...++.++ .+|. ||+++.+|++
T Consensus 413 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~i 492 (588)
T PRK13657 413 VVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI 492 (588)
T ss_pred EEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 55554321 0000000000 0000000111111111 1111 7899999999
Q ss_pred EEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||||++..| +++.|.++.+ ++|+|++||+++.+. .||+|++|++ +++..|+.+++.
T Consensus 493 liLDEpts~LD~~t~~~i~~~l~~~~~--~~tvIiitHr~~~~~-----------~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 493 LILDEATSALDVETEAKVKAALDELMK--GRTTFIIAHRLSTVR-----------NADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEEecHHHHH-----------hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999987653 6666666543 899999999999875 7999999999 999899988775
No 298
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.91 E-value=6.2e-24 Score=192.25 Aligned_cols=153 Identities=18% Similarity=0.142 Sum_probs=103.1
Q ss_pred eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeE------EEecCCcccc--cccceeeee----ccc
Q 023563 65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNV------AVIKSNKDTR--YGLDSIVTH----DGV 131 (280)
Q Consensus 65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i------~~~~~~~~~~--~~~~~v~~~----~~~ 131 (280)
+.+|+++||+|++|++++|+||||||||||+ ++|+|+.. ....+ .+..+..... ..+...+.. ...
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl-k~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~ 115 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLS-NIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGF 115 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCC
Confidence 3599999999999999999999999999999 99999843 22222 2222221110 010000000 000
Q ss_pred c--------cccccccCchHHHHH--------------HhhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCC
Q 023563 132 K--------LPCCALTTLSSFRQK--------------FGSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGK 183 (280)
Q Consensus 132 ~--------~~~~~~~~l~~~~~~--------------~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~ 183 (280)
. ...+...++..+.++ .+++++.+|++||||||++.. .+++.|.+++++ |.
T Consensus 116 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~-g~ 194 (264)
T PRK13546 116 KRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ-NK 194 (264)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC-CC
Confidence 0 000111122221111 167899999999999997654 477888888654 99
Q ss_pred EEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 184 TVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 184 tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||++||+++++.+ +||++++|++ +++..|+++++.
T Consensus 195 tiIiisH~~~~i~~----------~~d~i~~l~~G~i~~~g~~~~~~ 231 (264)
T PRK13546 195 TIFFVSHNLGQVRQ----------FCTKIAWIEGGKLKDYGELDDVL 231 (264)
T ss_pred EEEEEcCCHHHHHH----------HcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999876 9999999999 888888887765
No 299
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.91 E-value=5.2e-24 Score=214.07 Aligned_cols=168 Identities=15% Similarity=0.148 Sum_probs=113.6
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-C------C--eeEEEecCCcc-cc
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-K------G--RNVAVIKSNKD-TR 119 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~------g--~~i~~~~~~~~-~~ 119 (280)
.++|+++||+++|+++.+|+|+||+|.+|+++||+||||||||||+ ++|+|+.. . | ..++|++|+.. ..
T Consensus 317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLl-k~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~ 395 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLL-KLMLGQLQADSGRIHCGTKLEVAYFDQHRAELD 395 (635)
T ss_pred CceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCcEEEECCCcEEEEEeCcccccC
Confidence 4589999999999998999999999999999999999999999999 99999732 1 2 24667766531 10
Q ss_pred --cccceeeee--ccc--------ccccccccCch-HHHHHH--------------hhhhccCCCEEEEeCcccHHHH--
Q 023563 120 --YGLDSIVTH--DGV--------KLPCCALTTLS-SFRQKF--------------GSDAYDQVDVIGIDEAQFFEDL-- 170 (280)
Q Consensus 120 --~~~~~v~~~--~~~--------~~~~~~~~~l~-~~~~~~--------------a~aL~~~p~lLlLDEP~~~~~i-- 170 (280)
..+...+.. ... ....+...++. ....+. |++++.+|++|||||||+.+|.
T Consensus 396 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~ 475 (635)
T PRK11147 396 PEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET 475 (635)
T ss_pred CCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 011100000 000 00001111221 111111 5789999999999999887652
Q ss_pred HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee-c-eec-cccCccee
Q 023563 171 YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT-A-RCE-FCGKRAFF 228 (280)
Q Consensus 171 ~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~-~-~i~-~~g~~~~~ 228 (280)
.+.|.++.++.+.|||+||||.+++.+ +||++++|+ + ++. +.|+.++.
T Consensus 476 ~~~l~~~l~~~~~tvi~vSHd~~~~~~----------~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 476 LELLEELLDSYQGTVLLVSHDRQFVDN----------TVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHHHH----------hcCEEEEEeCCCeEEEccCCHHHH
Confidence 344444444446699999999999986 999999997 5 443 35655544
No 300
>PLN03211 ABC transporter G-25; Provisional
Probab=99.91 E-value=1.3e-24 Score=218.99 Aligned_cols=164 Identities=18% Similarity=0.200 Sum_probs=114.4
Q ss_pred EEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---Cee---------------EEEecCC
Q 023563 54 SPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---GRN---------------VAVIKSN 115 (280)
Q Consensus 54 ~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---g~~---------------i~~~~~~ 115 (280)
.++|++++|+++.+|+|+|+++++||+++|+||||||||||+ ++|+|.... ... +++++|+
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL-~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLL-NALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHH-HHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence 467788999989999999999999999999999999999999 999997432 122 3344433
Q ss_pred ccccc--ccceeee-----e-c-c--------cccccccccCchHHH-----------------HH--HhhhhccCCCEE
Q 023563 116 KDTRY--GLDSIVT-----H-D-G--------VKLPCCALTTLSSFR-----------------QK--FGSDAYDQVDVI 159 (280)
Q Consensus 116 ~~~~~--~~~~v~~-----~-~-~--------~~~~~~~~~~l~~~~-----------------~~--~a~aL~~~p~lL 159 (280)
..... .+.+.+. + . . .....+...++.+.. +| .|++|+.+|++|
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 21100 0000000 0 0 0 000001111222211 11 167899999999
Q ss_pred EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechh-HhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGD-YLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~-~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||||++.+ .+++.|++++++ |+|||+++|+++ .+.+ +||++++|++ +++..|+++++.
T Consensus 229 lLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TvI~~sH~~~~~i~~----------~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVLTLGSLAQK-GKTIVTSMHQPSSRVYQ----------MFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHH----------hhceEEEecCCcEEEECCHHHHH
Confidence 999997655 488899998875 999999999998 4654 8999999999 999999988774
No 301
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.91 E-value=9.8e-25 Score=221.86 Aligned_cols=166 Identities=20% Similarity=0.215 Sum_probs=114.2
Q ss_pred cEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------e
Q 023563 52 MVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------N 108 (280)
Q Consensus 52 ~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~ 108 (280)
.|+++||+++|++ +.+|+|+||+|++||.++|+||||||||||+ ++|.|+.. +|. .
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl-~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVA-ALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHH-HHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 5999999999964 5699999999999999999999999999999 99999732 222 3
Q ss_pred EEEecCCccc-----ccccceeee--ecccccccccccCchHH-----------------------HHHH--hhhhccCC
Q 023563 109 VAVIKSNKDT-----RYGLDSIVT--HDGVKLPCCALTTLSSF-----------------------RQKF--GSDAYDQV 156 (280)
Q Consensus 109 i~~~~~~~~~-----~~~~~~v~~--~~~~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p 156 (280)
+++++|++.. +.++.+-.. .+.....++...++.++ ++|. |||++.+|
T Consensus 557 i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p 636 (711)
T TIGR00958 557 VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP 636 (711)
T ss_pred ceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 4555554321 111100000 00000000111111111 1111 78999999
Q ss_pred CEEEEeCcccHHH--HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFED--LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~~--i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++|||||||+..| ..+.+.+.....++|+|++||+++.+. .||+|++|++ ++++.|+++++.
T Consensus 637 ~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-----------~aD~IivL~~G~ive~Gt~~eL~ 701 (711)
T TIGR00958 637 RVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-----------RADQILVLKKGSVVEMGTHKQLM 701 (711)
T ss_pred CEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-----------hCCEEEEEECCEEEEeeCHHHHH
Confidence 9999999988765 223333322224899999999999876 6999999999 999999999887
No 302
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.91 E-value=4.4e-24 Score=211.43 Aligned_cols=163 Identities=20% Similarity=0.225 Sum_probs=111.4
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C-----C--eeEEEecCCcc-cc
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K-----G--RNVAVIKSNKD-TR 119 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~-----g--~~i~~~~~~~~-~~ 119 (280)
.++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. . + ..++|++|... ..
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl-~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~ 398 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLF-RMITGQEQPDSGTIKIGETVKLAYVDQSRDALD 398 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCeEEEECCceEEEEEeCCccccC
Confidence 4689999999999988999999999999999999999999999999 99999732 1 1 14677777632 11
Q ss_pred --cccceeeee----------cccccccccccCchH-HHHH--------------HhhhhccCCCEEEEeCcccHHH---
Q 023563 120 --YGLDSIVTH----------DGVKLPCCALTTLSS-FRQK--------------FGSDAYDQVDVIGIDEAQFFED--- 169 (280)
Q Consensus 120 --~~~~~v~~~----------~~~~~~~~~~~~l~~-~~~~--------------~a~aL~~~p~lLlLDEP~~~~~--- 169 (280)
..+...+.. .......+...++.. ..++ +|++|+.+|++||||||++.+|
T Consensus 399 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~ 478 (552)
T TIGR03719 399 PNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478 (552)
T ss_pred CCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 111100000 000001112223321 1111 1678999999999999987654
Q ss_pred ---HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec--eec-cccCcce
Q 023563 170 ---LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA--RCE-FCGKRAF 227 (280)
Q Consensus 170 ---i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~--~i~-~~g~~~~ 227 (280)
++++|.++ +.|||++|||++++.+ +||++++|++ ++. +.|+.++
T Consensus 479 ~~~l~~~l~~~----~~~viivsHd~~~~~~----------~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 479 LRALEEALLEF----AGCAVVISHDRWFLDR----------IATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred HHHHHHHHHHC----CCeEEEEeCCHHHHHH----------hCCEEEEEECCCeEEEeCCCHHH
Confidence 45555444 3489999999999987 9999999974 333 4454433
No 303
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.91 E-value=1.7e-24 Score=214.50 Aligned_cols=164 Identities=18% Similarity=0.130 Sum_probs=115.1
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV 109 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i 109 (280)
-|+++||+++|++ +.+|+|+||+|++|+.++|+|+||||||||+ ++|.|+.. +|. .+
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl-~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i 408 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLV-NLIPRFYEPDSGQILLDGHDLADYTLASLRRQV 408 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHH-HHHHhccCCCCCeEEECCEeHHhcCHHHHHhhc
Confidence 4999999999964 5799999999999999999999999999999 99999732 222 24
Q ss_pred EEecCCccc-----ccccceee--e-ecccccccccccCchHHH-----------------------HHH--hhhhccCC
Q 023563 110 AVIKSNKDT-----RYGLDSIV--T-HDGVKLPCCALTTLSSFR-----------------------QKF--GSDAYDQV 156 (280)
Q Consensus 110 ~~~~~~~~~-----~~~~~~v~--~-~~~~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p 156 (280)
+|++|++.. +.++...- . .+......+...++.++. +|. ||+++.+|
T Consensus 409 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~ 488 (571)
T TIGR02203 409 ALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDA 488 (571)
T ss_pred eEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 455554321 11110000 0 000000011111222111 111 68999999
Q ss_pred CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++|||||||+.. .+++.|.++.+ ++|+|++||+.+... .||+|++|++ +++..|+.+++.
T Consensus 489 ~illLDEpts~LD~~~~~~i~~~L~~~~~--~~tiIiitH~~~~~~-----------~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 489 PILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTIE-----------KADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhC--CCEEEEEehhhHHHH-----------hCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999997765 36777777643 799999999998875 7999999999 999889888875
No 304
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.91 E-value=2.2e-24 Score=193.32 Aligned_cols=141 Identities=17% Similarity=0.149 Sum_probs=97.8
Q ss_pred eeeEeeeeEee-----CceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCccccc--ccceeee---
Q 023563 66 NLHSEASVSSP-----SGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKDTRY--GLDSIVT--- 127 (280)
Q Consensus 66 ~vl~~isl~i~-----~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~~~~--~~~~v~~--- 127 (280)
..+++++|++. +||+++|+||||||||||+ ++|+|+. +.|..+++++|...... .+...+.
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLl-k~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~ 86 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFI-KMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSIT 86 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHH-HHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHh
Confidence 35566666665 7999999999999999999 9999973 24557788877643211 1111110
Q ss_pred e-c----ccccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcC
Q 023563 128 H-D----GVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDG 182 (280)
Q Consensus 128 ~-~----~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g 182 (280)
. . ......+...++....++. |++|+.+|+++|||||++.+ .+.++|++++++.|
T Consensus 87 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 166 (246)
T cd03237 87 KDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE 166 (246)
T ss_pred hhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 0 0 0001112222333322221 67899999999999997654 47888888877668
Q ss_pred CEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 183 KTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 183 ~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
+|||++|||++++.. +||++++|++
T Consensus 167 ~tiiivsHd~~~~~~----------~~d~i~~l~~ 191 (246)
T cd03237 167 KTAFVVEHDIIMIDY----------LADRLIVFEG 191 (246)
T ss_pred CEEEEEeCCHHHHHH----------hCCEEEEEcC
Confidence 999999999999986 9999999987
No 305
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.91 E-value=1.3e-24 Score=216.13 Aligned_cols=165 Identities=15% Similarity=0.140 Sum_probs=116.3
Q ss_pred ccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCee------------
Q 023563 51 SMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRN------------ 108 (280)
Q Consensus 51 ~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~------------ 108 (280)
+.|+++||+++|++ +.+|+|+||+|++|++++|+||||||||||+ ++|.|+.. +|.+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~-~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL-QLLTRAWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 35999999999964 5699999999999999999999999999999 99999732 2222
Q ss_pred EEEecCCcccc-----cccceee-e-ecccccccccccCchHHHH----------------------HH--hhhhccCCC
Q 023563 109 VAVIKSNKDTR-----YGLDSIV-T-HDGVKLPCCALTTLSSFRQ----------------------KF--GSDAYDQVD 157 (280)
Q Consensus 109 i~~~~~~~~~~-----~~~~~v~-~-~~~~~~~~~~~~~l~~~~~----------------------~~--a~aL~~~p~ 157 (280)
+++++|+...- .++...- . .+.....++...++.++.+ |. ||+++.+|+
T Consensus 416 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ 495 (574)
T PRK11160 416 ISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAP 495 (574)
T ss_pred eeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 34444443210 0000000 0 0000001111222222221 11 789999999
Q ss_pred EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+|||||||+.. .+.+.|.++.+ ++|+|++||+++.+. .||+|++|++ +++..|+.+++.
T Consensus 496 ililDE~ts~lD~~t~~~i~~~l~~~~~--~~tviiitHr~~~~~-----------~~d~i~~l~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 496 LLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLTGLE-----------QFDRICVMDNGQIIEQGTHQELL 561 (574)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecChhHHH-----------hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999997764 36777777653 899999999999886 6999999999 999999998876
No 306
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.91 E-value=1.2e-24 Score=215.79 Aligned_cols=163 Identities=20% Similarity=0.217 Sum_probs=117.2
Q ss_pred cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCccccccc
Q 023563 52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYGL 122 (280)
Q Consensus 52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~~ 122 (280)
-|+++||+++|+ ++++|+|+||++++||.+||+|||||||||++ ++|.++.. +|.++..+... ..|..+
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~-~LL~r~~~~~~G~I~idg~dI~~i~~~-~lr~~I 405 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLI-KLLLRLYDPTSGEILIDGIDIRDISLD-SLRKRI 405 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCCeEEECCEehhhcCHH-HHHHhc
Confidence 399999999998 68999999999999999999999999999999 99999743 23332211111 113333
Q ss_pred ceeeeecccc--------------------cccccccC----------------------chH-HHHHH--hhhhccCCC
Q 023563 123 DSIVTHDGVK--------------------LPCCALTT----------------------LSS-FRQKF--GSDAYDQVD 157 (280)
Q Consensus 123 ~~v~~~~~~~--------------------~~~~~~~~----------------------l~~-~~~~~--a~aL~~~p~ 157 (280)
+.+.|...+. ..+....+ ++. .+++. |||++.+|+
T Consensus 406 ~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ 485 (567)
T COG1132 406 GIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP 485 (567)
T ss_pred cEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 3333211000 00000111 111 11111 789999999
Q ss_pred EEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+|+|||||+..| +.+.+.++.+ ++|+++++|.++.+. .||+|++|++ ++++.|+++++.
T Consensus 486 ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRlsti~-----------~aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 486 ILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLSTIK-----------NADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred EEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccHhHHH-----------hCCEEEEEECCEEEEecCHHHHH
Confidence 999999988754 6677776663 789999999999887 5999999999 999999999998
No 307
>PLN03073 ABC transporter F family; Provisional
Probab=99.91 E-value=3.7e-24 Score=217.11 Aligned_cols=166 Identities=17% Similarity=0.183 Sum_probs=112.2
Q ss_pred CccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C-------CeeEEEecCCcccc
Q 023563 50 HSMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K-------GRNVAVIKSNKDTR 119 (280)
Q Consensus 50 ~~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~-------g~~i~~~~~~~~~~ 119 (280)
.++|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. . ...++|++|+....
T Consensus 506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLL-k~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~ 584 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTIL-KLISGELQPSSGTVFRSAKVRMAVFSQHHVDG 584 (718)
T ss_pred CceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCceEEECCceeEEEEecccccc
Confidence 35899999999996 45799999999999999999999999999999 99999732 1 13466777653111
Q ss_pred cccce--e--ee--ecc----cccccccccCch-HHHHH--------------HhhhhccCCCEEEEeCcccHHHH---H
Q 023563 120 YGLDS--I--VT--HDG----VKLPCCALTTLS-SFRQK--------------FGSDAYDQVDVIGIDEAQFFEDL---Y 171 (280)
Q Consensus 120 ~~~~~--v--~~--~~~----~~~~~~~~~~l~-~~~~~--------------~a~aL~~~p~lLlLDEP~~~~~i---~ 171 (280)
..+.. . +. ... .....+...++. ....+ +|++++.+|++|||||||+.+|. .
T Consensus 585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~ 664 (718)
T PLN03073 585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVE 664 (718)
T ss_pred CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 11100 0 00 000 000111122222 11111 16789999999999999887652 2
Q ss_pred HHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec-cccCcce
Q 023563 172 DFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE-FCGKRAF 227 (280)
Q Consensus 172 ~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~-~~g~~~~ 227 (280)
.++..+.+. +.|||++|||++++.+ +||++++|++ +++ +.|++++
T Consensus 665 ~l~~~L~~~-~gtvIivSHd~~~i~~----------~~drv~~l~~G~i~~~~g~~~~ 711 (718)
T PLN03073 665 ALIQGLVLF-QGGVLMVSHDEHLISG----------SVDELWVVSEGKVTPFHGTFHD 711 (718)
T ss_pred HHHHHHHHc-CCEEEEEECCHHHHHH----------hCCEEEEEECCEEEEeCCCHHH
Confidence 233334332 4599999999999987 9999999998 776 5666554
No 308
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.91 E-value=5.8e-24 Score=210.72 Aligned_cols=164 Identities=21% Similarity=0.215 Sum_probs=111.6
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-C------C--eeEEEecCCc-ccc
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-K------G--RNVAVIKSNK-DTR 119 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~------g--~~i~~~~~~~-~~~ 119 (280)
.++|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. . + ..++|++|.. ...
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl-~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~ 400 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLF-KMITGQEQPDSGTIKIGETVKLAYVDQSRDALD 400 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCceEEEEEeCchhhcC
Confidence 4589999999999988999999999999999999999999999999 99999732 1 1 1467777753 111
Q ss_pred c--ccceeee----ecc------cccccccccCchH-HHHH--------------HhhhhccCCCEEEEeCcccHHH---
Q 023563 120 Y--GLDSIVT----HDG------VKLPCCALTTLSS-FRQK--------------FGSDAYDQVDVIGIDEAQFFED--- 169 (280)
Q Consensus 120 ~--~~~~v~~----~~~------~~~~~~~~~~l~~-~~~~--------------~a~aL~~~p~lLlLDEP~~~~~--- 169 (280)
. .+...+. ... .....+...++.. ..++ .+++++.+|++||||||++.+|
T Consensus 401 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 480 (556)
T PRK11819 401 PNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVET 480 (556)
T ss_pred CCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 1 1110000 000 0001112223321 1111 1678999999999999987654
Q ss_pred ---HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec--eec-cccCccee
Q 023563 170 ---LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA--RCE-FCGKRAFF 228 (280)
Q Consensus 170 ---i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~--~i~-~~g~~~~~ 228 (280)
++++|.++ +.|||++|||++++.+ +||++++|++ ++. +.|+.+++
T Consensus 481 ~~~l~~~l~~~----~~tvi~vtHd~~~~~~----------~~d~i~~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 481 LRALEEALLEF----PGCAVVISHDRWFLDR----------IATHILAFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred HHHHHHHHHhC----CCeEEEEECCHHHHHH----------hCCEEEEEECCCeEEEecCCHHHH
Confidence 44555443 3489999999999987 9999999974 333 45555544
No 309
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1e-23 Score=177.16 Aligned_cols=169 Identities=19% Similarity=0.167 Sum_probs=121.7
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCCccc----------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSNKDT---------- 118 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~~~~---------- 118 (280)
.|++++.+++|.|+.....+||||++.+||+.||+|.+|||||||+ ++|.+- ......+.|.......
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL-~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLL-KCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHH-HHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 4689999999999999999999999999999999999999999999 999873 3333334333211110
Q ss_pred -----ccccceeeee--ccccc----------------------------cccc-----ccCch--------HHH--HHH
Q 023563 119 -----RYGLDSIVTH--DGVKL----------------------------PCCA-----LTTLS--------SFR--QKF 148 (280)
Q Consensus 119 -----~~~~~~v~~~--~~~~~----------------------------~~~~-----~~~l~--------~~~--~~~ 148 (280)
|...+.+-|+ +++.. .++. ...++ .+. -++
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi 162 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence 0001111111 00000 0000 00111 111 122
Q ss_pred hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563 149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF 221 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~ 221 (280)
|+.|+..|+++++||||-.+ .++++++.+..+.|.+++++|||+..+.- ++||..+|+. +++.
T Consensus 163 ARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarL----------la~rlmvmk~g~vve 232 (258)
T COG4107 163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARL----------LADRLMVMKQGQVVE 232 (258)
T ss_pred HHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHH----------hhhcceeecCCCEec
Confidence 67899999999999996544 58899999999999999999999999985 8999999999 9999
Q ss_pred ccCcceee
Q 023563 222 CGKRAFFT 229 (280)
Q Consensus 222 ~g~~~~~~ 229 (280)
.|-++.++
T Consensus 233 ~GLTDrvL 240 (258)
T COG4107 233 SGLTDRVL 240 (258)
T ss_pred cccccccc
Confidence 99888777
No 310
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.2e-24 Score=204.77 Aligned_cols=164 Identities=20% Similarity=0.240 Sum_probs=115.8
Q ss_pred cEEEcCceEEeCCee-eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-------CCeeEEEecCCcccccccc
Q 023563 52 MVSPRPPLFSLQNRN-LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-------KGRNVAVIKSNKDTRYGLD 123 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~-vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-------~g~~i~~~~~~~~~~~~~~ 123 (280)
.|+++||++.|+.+. +|+++||+|++||.+||+|+|||||||++ ++|.++.. +|.++.-+.. ...|..++
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTil-r~LlrF~d~sG~I~IdG~dik~~~~-~SlR~~Ig 428 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTIL-RLLLRFFDYSGSILIDGQDIKEVSL-ESLRQSIG 428 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHH-HHHHHHhccCCcEEECCeeHhhhCh-HHhhhhee
Confidence 499999999998765 99999999999999999999999999999 98887632 3333211110 01122233
Q ss_pred eeeeeccccc--------------------ccccccCchHH-------------------------HHHHhhhhccCCCE
Q 023563 124 SIVTHDGVKL--------------------PCCALTTLSSF-------------------------RQKFGSDAYDQVDV 158 (280)
Q Consensus 124 ~v~~~~~~~~--------------------~~~~~~~l~~~-------------------------~~~~a~aL~~~p~l 158 (280)
.++|...+.. +.....++.+. +-..+||++.+|++
T Consensus 429 ~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I 508 (591)
T KOG0057|consen 429 VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI 508 (591)
T ss_pred EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe
Confidence 3332111000 00001111111 11126799999999
Q ss_pred EEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563 159 IGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL 230 (280)
Q Consensus 159 LlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~ 230 (280)
+++||||+.+| +++.+.+.. .|+|+|++-|+++.+. -||+|++|++ ++...|+.++++.
T Consensus 509 l~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l~ll~-----------~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 509 LLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRLDLLK-----------DFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred EEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecchhHh-----------cCCEEEEEECCeeEEeccHHHHhh
Confidence 99999988764 667666633 3999999999999987 6999999999 9999999999883
No 311
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.91 E-value=1.7e-24 Score=219.46 Aligned_cols=163 Identities=19% Similarity=0.218 Sum_probs=114.9
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccc
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYG 121 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~ 121 (280)
.|+++||+++|++ +.+|+|+||+|++|+.++|+||||||||||+ ++|.|+.. +|.++..+... ..+..
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~-~ll~g~~~p~~G~I~idg~~i~~~~~~-~~r~~ 532 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLT-KLLQRLYTPQHGQVLVDGVDLAIADPA-WLRRQ 532 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEehhhCCHH-HHHHh
Confidence 5999999999953 5699999999999999999999999999999 99999732 23222111100 11222
Q ss_pred cceeeeeccc---------c-----------cccccccCchHHH-----------------------HHH--hhhhccCC
Q 023563 122 LDSIVTHDGV---------K-----------LPCCALTTLSSFR-----------------------QKF--GSDAYDQV 156 (280)
Q Consensus 122 ~~~v~~~~~~---------~-----------~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p 156 (280)
++++.|+... . ..++...++.++. ++. |||++.+|
T Consensus 533 i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~ 612 (694)
T TIGR01846 533 MGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612 (694)
T ss_pred CeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 3333321110 0 0001111111111 111 68999999
Q ss_pred CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++|||||||+.. .+.+.|+++.+ ++|+|++||+++.+. .||+|++|++ ++++.|+.+++.
T Consensus 613 ~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-----------~~d~ii~l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 613 RILIFDEATSALDYESEALIMRNMREICR--GRTVIIIAHRLSTVR-----------ACDRIIVLEKGQIAESGRHEELL 679 (694)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHhC--CCEEEEEeCChHHHH-----------hCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999997754 47777777742 899999999999886 6999999999 999999998876
No 312
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.7e-24 Score=210.97 Aligned_cols=166 Identities=17% Similarity=0.200 Sum_probs=117.2
Q ss_pred CccEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCee----------
Q 023563 50 HSMVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRN---------- 108 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~---------- 108 (280)
.-.|+++||+|.|.. .++|+|+||+|++||+++|+||||+||||++ .+|..+. .+|.+
T Consensus 463 ~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTia-sLL~rfY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIA-SLLLRFYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred cceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHH-HHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence 346999999999965 4699999999999999999999999999999 8888762 23333
Q ss_pred --EEEecCCccc-----ccccceeee---ecccccccccccC----------------------ch-HHHHH--Hhhhhc
Q 023563 109 --VAVIKSNKDT-----RYGLDSIVT---HDGVKLPCCALTT----------------------LS-SFRQK--FGSDAY 153 (280)
Q Consensus 109 --i~~~~~~~~~-----~~~~~~v~~---~~~~~~~~~~~~~----------------------l~-~~~~~--~a~aL~ 153 (280)
|+++.|++-. +.++.+-.. .+.. ..+....| ++ ...+| .||||+
T Consensus 542 ~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i-~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 542 RKIGLVGQEPVLFSGSIRENIAYGLDNATDEEI-EAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred HHeeeeeccceeecccHHHHHhcCCCCCCHHHH-HHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 3344443321 000000000 0000 00000001 11 11112 278999
Q ss_pred cCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563 154 DQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~ 226 (280)
.+|.+|||||.|+++| +.+.|.++.+ ++|||++.|.+..++ .||+|+++++ +++..|+.+
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV~-----------~Ad~Ivvi~~G~V~E~G~h~ 687 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLSTVR-----------HADQIVVIDKGRVVEMGTHD 687 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhhHhh-----------hccEEEEEcCCeEEecccHH
Confidence 9999999999999876 5666666665 799999999999997 6999999999 999999999
Q ss_pred eeee
Q 023563 227 FFTL 230 (280)
Q Consensus 227 ~~~~ 230 (280)
|++.
T Consensus 688 eLl~ 691 (716)
T KOG0058|consen 688 ELLS 691 (716)
T ss_pred HHhh
Confidence 9883
No 313
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3e-24 Score=207.71 Aligned_cols=163 Identities=19% Similarity=0.207 Sum_probs=116.2
Q ss_pred EEEcCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC------------eeEEE
Q 023563 53 VSPRPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------------RNVAV 111 (280)
Q Consensus 53 l~~~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------------~~i~~ 111 (280)
++.+|++++|++. ++++|+||++++|+.++|+|+||||||||+ .+|.|+.. +| +++.+
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl-~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLL-NLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHH-HHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 5566999999654 899999999999999999999999999999 99999733 22 23444
Q ss_pred ecCCcccccc-ccee--eeecc----cccccccccCchHH----------------------HHHH--hhhhccCCCEEE
Q 023563 112 IKSNKDTRYG-LDSI--VTHDG----VKLPCCALTTLSSF----------------------RQKF--GSDAYDQVDVIG 160 (280)
Q Consensus 112 ~~~~~~~~~~-~~~v--~~~~~----~~~~~~~~~~l~~~----------------------~~~~--a~aL~~~p~lLl 160 (280)
++|++..-.+ +... +.+.. ....++...++.++ +.|. |||++.+++++|
T Consensus 400 v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~l 479 (559)
T COG4988 400 VSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLL 479 (559)
T ss_pred eCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 4444321100 0000 00000 00001111111111 1222 689999999999
Q ss_pred EeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 161 IDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 161 LDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+||||+..| +.+.|.++++ ++|++++||++..+. -||+|++|++ ++++.|+++++.
T Consensus 480 lDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~~~~-----------~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 480 LDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLEDAA-----------DADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred ecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChHHHh-----------cCCEEEEecCCceeccCCHHHHh
Confidence 999987654 7788888876 699999999999997 5999999999 999999999986
No 314
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.90 E-value=1.4e-23 Score=191.61 Aligned_cols=165 Identities=17% Similarity=0.170 Sum_probs=113.0
Q ss_pred CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CC-----eeEEEecCCccccc-
Q 023563 49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KG-----RNVAVIKSNKDTRY- 120 (280)
Q Consensus 49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g-----~~i~~~~~~~~~~~- 120 (280)
..+.|+++|+++. ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. .| ..++|++|......
T Consensus 36 ~~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl-~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~ 112 (282)
T cd03291 36 DDNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLL-MLILGELEPSEGKIKHSGRISFSSQFSWIMPG 112 (282)
T ss_pred CCCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEEEEeCccccccc
Confidence 3457999999986 46799999999999999999999999999999 99999743 12 24677777643210
Q ss_pred ccceeee---ecc--cccccccccC----------------------ch-HHHHH--HhhhhccCCCEEEEeCcccHHH-
Q 023563 121 GLDSIVT---HDG--VKLPCCALTT----------------------LS-SFRQK--FGSDAYDQVDVIGIDEAQFFED- 169 (280)
Q Consensus 121 ~~~~v~~---~~~--~~~~~~~~~~----------------------l~-~~~~~--~a~aL~~~p~lLlLDEP~~~~~- 169 (280)
.+...+. ... .....+...+ ++ ....+ .|++|+.+|++||||||+...|
T Consensus 113 tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~ 192 (282)
T cd03291 113 TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192 (282)
T ss_pred CHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 1100000 000 0000000011 11 11111 1678999999999999976553
Q ss_pred -----HHHHH-HHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 170 -----LYDFC-REAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 170 -----i~~~l-~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+++.+ .++. + +.|||++||+++++. .||++++|++ +++..|+++++.
T Consensus 193 ~~~~~l~~~ll~~~~-~-~~tIiiisH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 193 FTEKEIFESCVCKLM-A-NKTRILVTSKMEHLK-----------KADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred HHHHHHHHHHHHHhh-C-CCEEEEEeCChHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence 44433 3443 3 899999999999874 7999999999 999999988876
No 315
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.90 E-value=7.2e-24 Score=180.96 Aligned_cols=137 Identities=23% Similarity=0.192 Sum_probs=89.2
Q ss_pred eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcc-cccccceeeeecccc-cc--c--c--
Q 023563 65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKD-TRYGLDSIVTHDGVK-LP--C--C-- 136 (280)
Q Consensus 65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~-~~~~~~~v~~~~~~~-~~--~--~-- 136 (280)
+++|+|+||+|++|++++|+||||||||||+ +++.+ ..| .+.+...... .+..+.++.+..... .. . +
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl-~~il~--~~G-~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~ 83 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLV-NEGLY--ASG-KARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQ 83 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHH-HHHhh--cCC-cEEECCcccccccccEEEEhHHHHHHHcCCCccccCC
Confidence 5789999999999999999999999999999 88753 112 2221111000 011122222200000 00 0 0
Q ss_pred cccCchH-HHH--HHhhhhccC--CCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCcccc
Q 023563 137 ALTTLSS-FRQ--KFGSDAYDQ--VDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDI 205 (280)
Q Consensus 137 ~~~~l~~-~~~--~~a~aL~~~--p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~l 205 (280)
....++. ... ..+++++.+ |++||||||+.. ..+.+.|+++++ .|+|||++||+++++.
T Consensus 84 ~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~~~~--------- 153 (176)
T cd03238 84 KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLDVLS--------- 153 (176)
T ss_pred CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH---------
Confidence 0011111 112 227889999 999999999654 457788888876 4999999999999874
Q ss_pred ccccceEEEeec
Q 023563 206 IPLADSVTKLTA 217 (280)
Q Consensus 206 l~~aD~i~~L~~ 217 (280)
.||++++|.+
T Consensus 154 --~~d~i~~l~~ 163 (176)
T cd03238 154 --SADWIIDFGP 163 (176)
T ss_pred --hCCEEEEECC
Confidence 7999999977
No 316
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.90 E-value=1.8e-23 Score=210.61 Aligned_cols=166 Identities=16% Similarity=0.086 Sum_probs=116.9
Q ss_pred ccEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcc--------
Q 023563 51 SMVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKD-------- 117 (280)
Q Consensus 51 ~~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~-------- 117 (280)
++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-..+..
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLM-NILGCLDKPTSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEcCcCCHHHHH
Confidence 48999999999953 4799999999999999999999999999999 99999832 2222222111100
Q ss_pred --cccccceeeeecccccc---------------------------cccccCchHHHHHH--------------hhhhcc
Q 023563 118 --TRYGLDSIVTHDGVKLP---------------------------CCALTTLSSFRQKF--------------GSDAYD 154 (280)
Q Consensus 118 --~~~~~~~v~~~~~~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~ 154 (280)
.+..++++++....... .+...++.+..++. +++|+.
T Consensus 82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161 (648)
T ss_pred HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 01223333332211100 00111121111111 578999
Q ss_pred CCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcce
Q 023563 155 QVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAF 227 (280)
Q Consensus 155 ~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~ 227 (280)
+|++||||||+.. ..+.+++++++++ |.|+|++||+++.+. .||++++|++ +++..|++++
T Consensus 162 ~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~-g~tilivsH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~ 229 (648)
T PRK10535 162 GGQVILADEPTGALDSHSGEEVMAILHQLRDR-GHTVIIVTHDPQVAA-----------QAERVIEIRDGEIVRNPPAQE 229 (648)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHH-----------hCCEEEEEECCEEEeecCccc
Confidence 9999999999654 4588888888765 999999999999874 7999999999 9999999987
Q ss_pred ee
Q 023563 228 FT 229 (280)
Q Consensus 228 ~~ 229 (280)
..
T Consensus 230 ~~ 231 (648)
T PRK10535 230 KV 231 (648)
T ss_pred cc
Confidence 64
No 317
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.90 E-value=2.8e-24 Score=214.13 Aligned_cols=164 Identities=20% Similarity=0.172 Sum_probs=113.7
Q ss_pred cEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eEE
Q 023563 52 MVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NVA 110 (280)
Q Consensus 52 ~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i~ 110 (280)
.|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+ ++|.|+.. +|. .++
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~-~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLI-NLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHH-HHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 5999999999975 5799999999999999999999999999999 99999732 222 234
Q ss_pred EecCCcccccc-cceee--eecc----cccccccccCchH-----------------------HHHHH--hhhhccCCCE
Q 023563 111 VIKSNKDTRYG-LDSIV--THDG----VKLPCCALTTLSS-----------------------FRQKF--GSDAYDQVDV 158 (280)
Q Consensus 111 ~~~~~~~~~~~-~~~v~--~~~~----~~~~~~~~~~l~~-----------------------~~~~~--a~aL~~~p~l 158 (280)
+++|+...-.. +...+ .... ....+....++.+ ..++. ||+|+.+|++
T Consensus 413 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i 492 (585)
T TIGR01192 413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI 492 (585)
T ss_pred EEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 44444321000 00000 0000 0000000001111 11111 7899999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||||++.. .+.+.|.++. + ++|+|++||+++.+. .||+|++|++ +++..|+.+++.
T Consensus 493 lilDEpts~LD~~~~~~i~~~l~~~~-~-~~tvI~isH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 493 LVLDEATSALDVETEARVKNAIDALR-K-NRTTFIIAHRLSTVR-----------NADLVLFLDQGRLIEKGSFQELI 557 (585)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHh-C-CCEEEEEEcChHHHH-----------cCCEEEEEECCEEEEECCHHHHH
Confidence 9999998654 4677777664 3 899999999999885 6999999999 999999988876
No 318
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=2.2e-24 Score=222.80 Aligned_cols=164 Identities=20% Similarity=0.242 Sum_probs=120.1
Q ss_pred ccEEEcCceEEeCCe---eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCcccc
Q 023563 51 SMVSPRPPLFSLQNR---NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKDTR 119 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~---~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~~~ 119 (280)
-.|+++||+|+|..+ .+|+|+||+|++|+.++|+|||||||||++ .+|.++. ++|.++..+.. ...|
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i-~LL~RfydP~~G~V~idG~di~~~~~-~~lr 426 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLI-QLLARFYDPTSGEVLIDGEDIRNLNL-KWLR 426 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHH-HHHHHhcCCCCceEEEcCccchhcch-HHHH
Confidence 369999999999765 599999999999999999999999999999 9999973 24444432221 1223
Q ss_pred cccceeeeeccccccc---------------------ccccCchHHH-----------------------HHH--hhhhc
Q 023563 120 YGLDSIVTHDGVKLPC---------------------CALTTLSSFR-----------------------QKF--GSDAY 153 (280)
Q Consensus 120 ~~~~~v~~~~~~~~~~---------------------~~~~~l~~~~-----------------------~~~--a~aL~ 153 (280)
..++-|.|. ..++.. ....+..++. +|. ||||+
T Consensus 427 ~~iglV~Qe-PvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv 505 (1228)
T KOG0055|consen 427 SQIGLVSQE-PVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV 505 (1228)
T ss_pred hhcCeeeec-hhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence 344444432 111110 0011111111 111 68999
Q ss_pred cCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563 154 DQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~ 226 (280)
.+|++|||||||+++| +.+.|.++.+ |+|.|+|+|++..++ -||+|++|++ ++++.|+++
T Consensus 506 ~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHRLStIr-----------naD~I~v~~~G~IvE~G~h~ 572 (1228)
T KOG0055|consen 506 RNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHRLSTIR-----------NADKIAVMEEGKIVEQGTHD 572 (1228)
T ss_pred hCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeeehhhhh-----------ccCEEEEEECCEEEEecCHH
Confidence 9999999999998875 5666666553 999999999999997 5999999999 999999999
Q ss_pred eeee
Q 023563 227 FFTL 230 (280)
Q Consensus 227 ~~~~ 230 (280)
|++.
T Consensus 573 ELi~ 576 (1228)
T KOG0055|consen 573 ELIA 576 (1228)
T ss_pred HHHh
Confidence 9984
No 319
>PLN03073 ABC transporter F family; Provisional
Probab=99.90 E-value=7.8e-24 Score=214.75 Aligned_cols=167 Identities=19% Similarity=0.175 Sum_probs=113.2
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch----hCCeeEEEecCCccccc-c----
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET----QKGRNVAVIKSNKDTRY-G---- 121 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~----~~g~~i~~~~~~~~~~~-~---- 121 (280)
.+|+++|++++|+++.+|+|+||+|.+|+++||+||||||||||+ ++|+|.. ..+..+.++.|...... .
T Consensus 176 ~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLL-r~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 176 KDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFL-RYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred eeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 379999999999988899999999999999999999999999999 9999853 24556777766421100 0
Q ss_pred ---------------cceeeeeccc-----------------ccc---------------------------cccccCch
Q 023563 122 ---------------LDSIVTHDGV-----------------KLP---------------------------CCALTTLS 142 (280)
Q Consensus 122 ---------------~~~v~~~~~~-----------------~~~---------------------------~~~~~~l~ 142 (280)
++.+.+.... ... .+...++.
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~ 334 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFT 334 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCC
Confidence 0001100000 000 00001110
Q ss_pred -HHHHH--------------HhhhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCCEEEEEEechhHhhhccCCcccc
Q 023563 143 -SFRQK--------------FGSDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDI 205 (280)
Q Consensus 143 -~~~~~--------------~a~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~l 205 (280)
...++ .|++|+.+|++||||||++.+|. .+.+.++.++.+.|||+||||.+++.+
T Consensus 335 ~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~-------- 406 (718)
T PLN03073 335 PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNT-------- 406 (718)
T ss_pred hHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH--------
Confidence 11111 15689999999999999887652 222333333348899999999999986
Q ss_pred ccccceEEEeec-eec-cccCccee
Q 023563 206 IPLADSVTKLTA-RCE-FCGKRAFF 228 (280)
Q Consensus 206 l~~aD~i~~L~~-~i~-~~g~~~~~ 228 (280)
+||+|++|++ ++. +.|+.+.+
T Consensus 407 --~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 407 --VVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred --hCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999 775 56765544
No 320
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.90 E-value=2.1e-23 Score=180.10 Aligned_cols=142 Identities=19% Similarity=0.166 Sum_probs=91.8
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeE---------------EEecCC
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNV---------------AVIKSN 115 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i---------------~~~~~~ 115 (280)
||+++|++++|+++.+++ +||+|++||+++|+||||||||||+ ++|+|+.. ....+ .++++.
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLL-RMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHN 78 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCcccChhhhhhEEeccCC
Confidence 488999999998876665 9999999999999999999999999 99999732 22222 233222
Q ss_pred cccccc--cceeee-------ecccccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH----
Q 023563 116 KDTRYG--LDSIVT-------HDGVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE---- 168 (280)
Q Consensus 116 ~~~~~~--~~~v~~-------~~~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~---- 168 (280)
...... +...+. ........+...++....++. +++++.+|++||||||++..
T Consensus 79 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~ 158 (195)
T PRK13541 79 LGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN 158 (195)
T ss_pred cCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 110000 000000 000000011111222222211 57899999999999996654
Q ss_pred --HHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563 169 --DLYDFCREAADHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 169 --~i~~~l~~l~~~~g~tviivtHdl~~~~ 196 (280)
.+.+++++..+ .|.|+|++||+++++.
T Consensus 159 ~~~l~~~l~~~~~-~~~tiii~sh~~~~i~ 187 (195)
T PRK13541 159 RDLLNNLIVMKAN-SGGIVLLSSHLESSIK 187 (195)
T ss_pred HHHHHHHHHHHHh-CCCEEEEEeCCccccc
Confidence 46777766555 4999999999999886
No 321
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.90 E-value=6.6e-24 Score=186.10 Aligned_cols=151 Identities=21% Similarity=0.260 Sum_probs=98.0
Q ss_pred EEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----------cccccc
Q 023563 54 SPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----------KDTRYG 121 (280)
Q Consensus 54 ~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----------~~~~~~ 121 (280)
.+.|++++|+ +..+++++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-... ...+..
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLL-LAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 5788999996 46799999999999999999999999999999 99999732 22222111100 000112
Q ss_pred cceeeeecccc---------c----------ccccccCchHHH-----------------------HH--HhhhhccCCC
Q 023563 122 LDSIVTHDGVK---------L----------PCCALTTLSSFR-----------------------QK--FGSDAYDQVD 157 (280)
Q Consensus 122 ~~~v~~~~~~~---------~----------~~~~~~~l~~~~-----------------------~~--~a~aL~~~p~ 157 (280)
++++++..... . ......++.... .+ .|++++.+|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 22222211100 0 000011111111 01 1678999999
Q ss_pred EEEEeCcccHHH------HHH--HHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 158 VIGIDEAQFFED------LYD--FCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 158 lLlLDEP~~~~~------i~~--~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
+||||||+...| +++ +++.+.+ .|.|+|++||+.+++. .||++++|++
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~~-----------~~d~i~~l~~ 216 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHKLQYLP-----------HADWIIAMKD 216 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHh-----------hCCEEEEecC
Confidence 999999977654 444 4445544 4899999999999874 7999999875
No 322
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.90 E-value=1.1e-23 Score=209.06 Aligned_cols=164 Identities=15% Similarity=0.123 Sum_probs=114.2
Q ss_pred cEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------e
Q 023563 52 MVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------N 108 (280)
Q Consensus 52 ~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~ 108 (280)
.|+++||+++|++ +.+|+|+||+|++||.++|+||||||||||+ ++|.|+.. +|. .
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLl-klL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLF-QLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHH-HHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 5999999999964 5699999999999999999999999999999 99999743 221 2
Q ss_pred EEEecCCccc-----ccccceeeee--cccccccccccCchH-----------------------HHHHH--hhhhccCC
Q 023563 109 VAVIKSNKDT-----RYGLDSIVTH--DGVKLPCCALTTLSS-----------------------FRQKF--GSDAYDQV 156 (280)
Q Consensus 109 i~~~~~~~~~-----~~~~~~v~~~--~~~~~~~~~~~~l~~-----------------------~~~~~--a~aL~~~p 156 (280)
+++++|++.. +.++...-.. +......+...++.+ -++|. ||+++.+|
T Consensus 416 i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~ 495 (576)
T TIGR02204 416 MALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA 495 (576)
T ss_pred ceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 4455544321 1111000000 000000001111111 11221 78999999
Q ss_pred CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++||||||++.. .+++.++++.+ ++|+|++||+++... .||+|++|++ ++++.|+++++.
T Consensus 496 ~ililDEpts~lD~~~~~~i~~~l~~~~~--~~t~IiitH~~~~~~-----------~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 496 PILLLDEATSALDAESEQLVQQALETLMK--GRTTLIIAHRLATVL-----------KADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-----------hCCEEEEEECCEEEeeecHHHHH
Confidence 999999997764 36777777643 899999999998875 7999999999 999999988765
No 323
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.90 E-value=1.4e-23 Score=208.57 Aligned_cols=164 Identities=15% Similarity=0.151 Sum_probs=113.8
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV 109 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i 109 (280)
-|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+ ++|.|+.. +|. .+
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl-~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 391 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLL-SLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL 391 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence 5899999999964 5799999999999999999999999999999 99999732 222 23
Q ss_pred EEecCCccc-----ccccceeeee--cccccccccccCchH-----------------------HHHH--HhhhhccCCC
Q 023563 110 AVIKSNKDT-----RYGLDSIVTH--DGVKLPCCALTTLSS-----------------------FRQK--FGSDAYDQVD 157 (280)
Q Consensus 110 ~~~~~~~~~-----~~~~~~v~~~--~~~~~~~~~~~~l~~-----------------------~~~~--~a~aL~~~p~ 157 (280)
++++|+... +.++...... +.....++...++.+ .++| .||+++.+|+
T Consensus 392 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ 471 (569)
T PRK10789 392 AVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE 471 (569)
T ss_pred EEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 444443221 0000000000 000000011111111 1111 2789999999
Q ss_pred EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+||||||++.. .+.+.|+++. + |+|+|++||+++.+. .||+|++|++ +++..|+.+++.
T Consensus 472 illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tii~itH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 472 ILILDDALSAVDGRTEHQILHNLRQWG-E-GRTVIISAHRLSALT-----------EASEILVMQHGHIAQRGNHDQLA 537 (569)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEecchhHHH-----------cCCEEEEEeCCEEEEecCHHHHH
Confidence 99999998764 3677777764 3 899999999998875 6999999999 999999988876
No 324
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.90 E-value=7.1e-24 Score=182.17 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=85.7
Q ss_pred eCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC--------cccccccceeeeecc-c
Q 023563 62 LQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN--------KDTRYGLDSIVTHDG-V 131 (280)
Q Consensus 62 y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~--------~~~~~~~~~v~~~~~-~ 131 (280)
|+++.+|+++||+|++||+++|+||||||||||+ ++|+|+.. ....+.+-... ...+..+++++++.. .
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLL-LHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 3567899999999999999999999999999999 99999732 22222211100 001122333333211 0
Q ss_pred ccc---------------------------cccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH---
Q 023563 132 KLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF--- 167 (280)
Q Consensus 132 ~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~--- 167 (280)
.+. .+...++..+.++. +++|+.+|++||||||++.
T Consensus 81 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 160 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160 (190)
T ss_pred cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 000 01111222222111 5689999999999999654
Q ss_pred ---HHHHHHHHHHHhhcCCEEEEEEechhHh
Q 023563 168 ---EDLYDFCREAADHDGKTVIVAGLDGDYL 195 (280)
Q Consensus 168 ---~~i~~~l~~l~~~~g~tviivtHdl~~~ 195 (280)
..++++|++++++ |+|||++|||++++
T Consensus 161 ~~~~~~~~~l~~~~~~-~~tili~sH~~~~~ 190 (190)
T TIGR01166 161 AGREQMLAILRRLRAE-GMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHHHHHHHc-CCEEEEEeeccccC
Confidence 4588888888765 99999999998753
No 325
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.90 E-value=1.8e-23 Score=204.78 Aligned_cols=168 Identities=18% Similarity=0.150 Sum_probs=116.7
Q ss_pred CCccEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---------hCCeeEEEecCCccc
Q 023563 49 IHSMVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---------QKGRNVAVIKSNKDT 118 (280)
Q Consensus 49 ~~~~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---------~~g~~i~~~~~~~~~ 118 (280)
..++++++|+++.|++ +.+++++||.|.+|+.+||+||||+|||||| ++|.|.. -.+..++|+.|+...
T Consensus 318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLl-k~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~ 396 (530)
T COG0488 318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLL-KLLAGELGPLSGTVKVGETVKIGYFDQHRDE 396 (530)
T ss_pred CCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHH-HHHhhhcccCCceEEeCCceEEEEEEehhhh
Confidence 3568999999999966 6999999999999999999999999999999 9996641 133568888887633
Q ss_pred ccccceeeeecccccccccccCchHHHH------------------------HHhhhhccCCCEEEEeCcccHHHH--HH
Q 023563 119 RYGLDSIVTHDGVKLPCCALTTLSSFRQ------------------------KFGSDAYDQVDVIGIDEAQFFEDL--YD 172 (280)
Q Consensus 119 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~------------------------~~a~aL~~~p~lLlLDEP~~~~~i--~~ 172 (280)
...-..++.......+......+..++. ..|+.++.+|.+|||||||+.+|+ ++
T Consensus 397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~ 476 (530)
T COG0488 397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLE 476 (530)
T ss_pred cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHH
Confidence 2111011100000000000000111111 114457889999999999999864 67
Q ss_pred HHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcce
Q 023563 173 FCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAF 227 (280)
Q Consensus 173 ~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~ 227 (280)
.|.+...+..-|||+||||..++.+ +|++++.+.+ ...+.|..++
T Consensus 477 aLe~aL~~f~Gtvl~VSHDr~Fl~~----------va~~i~~~~~~~~~~~g~y~~ 522 (530)
T COG0488 477 ALEEALLDFEGTVLLVSHDRYFLDR----------VATRIWLVEDKVEEFEGGYED 522 (530)
T ss_pred HHHHHHHhCCCeEEEEeCCHHHHHh----------hcceEEEEcCceeEcCCCHHH
Confidence 7777777788899999999999997 9999999986 3333444433
No 326
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.89 E-value=5.4e-24 Score=187.70 Aligned_cols=145 Identities=21% Similarity=0.214 Sum_probs=97.4
Q ss_pred eEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC-------eeEEEecCCccccc----ccceee-------
Q 023563 73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG-------RNVAVIKSNKDTRY----GLDSIV------- 126 (280)
Q Consensus 73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g-------~~i~~~~~~~~~~~----~~~~v~------- 126 (280)
|+|++||+++|+||||||||||+ ++|+|+.. +| +.++|++|+..... .+...+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLL-RAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 57899999999999999999999 99999732 22 23555555432100 000000
Q ss_pred ----eecc-----cccccccccCchHHHHH--------------HhhhhccCCCEEEEeCcccHH------HHHHHHHHH
Q 023563 127 ----THDG-----VKLPCCALTTLSSFRQK--------------FGSDAYDQVDVIGIDEAQFFE------DLYDFCREA 177 (280)
Q Consensus 127 ----~~~~-----~~~~~~~~~~l~~~~~~--------------~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l 177 (280)
.... .....+...++..+.++ .+++++.+|++||+|||++.. .+.++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~ 159 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL 159 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 0000 00001111122211111 167899999999999996654 588888888
Q ss_pred HhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceee
Q 023563 178 ADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFT 229 (280)
Q Consensus 178 ~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~ 229 (280)
+++ |.|+|++|||++++.+ +||++++++.+++..|+++++.
T Consensus 160 ~~~-~~tvii~sH~~~~~~~----------~~d~i~~l~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 160 AGA-GTAILMTTHDLAQAMA----------TCDRVVLLNGRVIADGTPQQLQ 200 (223)
T ss_pred HHc-CCEEEEEeCCHHHHHH----------hCCEEEEECCEEEeecCHHHhc
Confidence 765 9999999999999876 9999999933888889888876
No 327
>PLN03130 ABC transporter C family member; Provisional
Probab=99.89 E-value=1.1e-23 Score=228.99 Aligned_cols=165 Identities=18% Similarity=0.145 Sum_probs=117.0
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCee------------E
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRN------------V 109 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~------------i 109 (280)
.|+++||+++|.+ .++|+|+||+|++||.+||+|++|||||||+ ++|.|+. ++|.+ +
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl-~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSML-NALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence 5999999999954 4699999999999999999999999999999 9999873 23433 4
Q ss_pred EEecCCccc-----ccccceeeee-cccccccccccCchHHH-----------------------HH--HhhhhccCCCE
Q 023563 110 AVIKSNKDT-----RYGLDSIVTH-DGVKLPCCALTTLSSFR-----------------------QK--FGSDAYDQVDV 158 (280)
Q Consensus 110 ~~~~~~~~~-----~~~~~~v~~~-~~~~~~~~~~~~l~~~~-----------------------~~--~a~aL~~~p~l 158 (280)
++++|++.. +.++...-+. +.....++...++.++. ++ .||||+.+|++
T Consensus 1316 siVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I 1395 (1622)
T PLN03130 1316 GIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI 1395 (1622)
T ss_pred EEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 455554321 1111000000 00000111111121111 11 17899999999
Q ss_pred EEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563 159 IGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL 230 (280)
Q Consensus 159 LlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~ 230 (280)
|||||||+..| +.+.|++..+ ++|+|+|+|.++.+. -||+|++|++ ++++.|++++++.
T Consensus 1396 LILDEATSaLD~~Te~~Iq~~I~~~~~--~~TvI~IAHRL~tI~-----------~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1396 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTII-----------DCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEeCChHHHH-----------hCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999987654 6666666643 899999999999987 5999999999 9999999999983
No 328
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.89 E-value=1.6e-23 Score=206.10 Aligned_cols=150 Identities=19% Similarity=0.182 Sum_probs=101.7
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV 109 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i 109 (280)
-|+++||+++|++ +++|+|+||+|++|+.++|+||||||||||+ ++|.|+.. +|. .+
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~-~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLL-NLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 5999999999975 4699999999999999999999999999999 99999733 222 23
Q ss_pred EEecCCccc-----ccccceeee--ecccccccccccCchHHH-----------------------HHH--hhhhccCCC
Q 023563 110 AVIKSNKDT-----RYGLDSIVT--HDGVKLPCCALTTLSSFR-----------------------QKF--GSDAYDQVD 157 (280)
Q Consensus 110 ~~~~~~~~~-----~~~~~~v~~--~~~~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p~ 157 (280)
++++|+... +.++..... .+.....++...++.++. +|. ||+++.+|+
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ 478 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP 478 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence 444443321 000000000 000000111111222111 111 689999999
Q ss_pred EEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563 158 VIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL 215 (280)
Q Consensus 158 lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L 215 (280)
+||||||++..| +++.+.++. .++|+|++||+++.+. .||+|++|
T Consensus 479 ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-----------~~d~i~~l 529 (529)
T TIGR02857 479 LLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLALAE-----------RADRIVVL 529 (529)
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHH-----------hCCEEEeC
Confidence 999999987653 677777764 3899999999999885 79999875
No 329
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.89 E-value=4.3e-23 Score=185.88 Aligned_cols=155 Identities=17% Similarity=0.117 Sum_probs=103.1
Q ss_pred cCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEE-----------EecCCcc-----
Q 023563 56 RPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVA-----------VIKSNKD----- 117 (280)
Q Consensus 56 ~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~-----------~~~~~~~----- 117 (280)
.||+++|++. .+|+|+|+ +.+|++++|+||||||||||+ ++|+|+.. ....+. +......
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLl-k~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTAL-KILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHH-HHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 4799999765 59999995 999999999999999999999 99999843 233332 1011100
Q ss_pred -ccc--ccceeeeecccc---------------------cccccccCchHHHHH--------------HhhhhccCCCEE
Q 023563 118 -TRY--GLDSIVTHDGVK---------------------LPCCALTTLSSFRQK--------------FGSDAYDQVDVI 159 (280)
Q Consensus 118 -~~~--~~~~v~~~~~~~---------------------~~~~~~~~l~~~~~~--------------~a~aL~~~p~lL 159 (280)
.+. .+.++++..... ...+...++....++ .+++++.+|+++
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~il 161 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFY 161 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 000 111122211100 000111122111111 156899999999
Q ss_pred EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceecccc
Q 023563 160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCG 223 (280)
Q Consensus 160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g 223 (280)
|+|||++.. .+.++|++++++ |+|||++|||++++.+ +||++++|++++.+.|
T Consensus 162 llDEPts~LD~~~~~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~----------~ad~i~~l~~~~~~~~ 220 (255)
T cd03236 162 FFDEPSSYLDIKQRLNAARLIRELAED-DNYVLVVEHDLAVLDY----------LSDYIHCLYGEPGAYG 220 (255)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHH----------hCCEEEEECCCCCcce
Confidence 999997654 477888888775 8999999999999986 8999999987665443
No 330
>PLN03232 ABC transporter C family member; Provisional
Probab=99.89 E-value=1.1e-23 Score=228.08 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=116.1
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCee------------E
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRN------------V 109 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~------------i 109 (280)
.|+++||+++|++ .++|+|+||+|++||.+||+||+|||||||+ ++|.|+. ++|.+ +
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~-~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSML-NALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence 5999999999953 5799999999999999999999999999999 9999973 23333 4
Q ss_pred EEecCCccc-----ccccceeeee-cccccccccccCchHH-----------------------HHH--HhhhhccCCCE
Q 023563 110 AVIKSNKDT-----RYGLDSIVTH-DGVKLPCCALTTLSSF-----------------------RQK--FGSDAYDQVDV 158 (280)
Q Consensus 110 ~~~~~~~~~-----~~~~~~v~~~-~~~~~~~~~~~~l~~~-----------------------~~~--~a~aL~~~p~l 158 (280)
++++|++.. +.++...-.. +.....++...++.++ +++ .||||+.+|++
T Consensus 1313 ~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I 1392 (1495)
T PLN03232 1313 SIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392 (1495)
T ss_pred EEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 455554321 1111100000 0000011111111111 111 17899999999
Q ss_pred EEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||||||+..| +.+.|++..+ ++|+|+|+|.++.+. -||+|++|++ ++++.|+++++.
T Consensus 1393 LILDEATSaLD~~Te~~Iq~~L~~~~~--~~TvI~IAHRl~ti~-----------~~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1393 LVLDEATASVDVRTDSLIQRTIREEFK--SCTMLVIAHRLNTII-----------DCDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEeCCHHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence 99999987654 5566665543 899999999999987 5999999999 999999999987
No 331
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2e-23 Score=186.37 Aligned_cols=160 Identities=19% Similarity=0.228 Sum_probs=118.8
Q ss_pred ceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCC---cccccccceee
Q 023563 58 PLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSN---KDTRYGLDSIV 126 (280)
Q Consensus 58 ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~---~~~~~~~~~v~ 126 (280)
+.+++|+..+ +++|+.+.-.+++|.|+||||||||+ ++|+|+.. +|+-+...... +..+..++|+|
T Consensus 6 ~~~~lG~~~l--~a~~~~p~~GvTAlFG~SGsGKTsli-n~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVF 82 (352)
T COG4148 6 FRQRLGNFAL--DANFTLPARGITALFGPSGSGKTSLI-NMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82 (352)
T ss_pred hhhhcCceEE--EEeccCCCCceEEEecCCCCChhhHH-HHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEe
Confidence 5566676543 78999998779999999999999999 99999832 22211100000 00123345555
Q ss_pred eecccccc----------------------cccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH--
Q 023563 127 THDGVKLP----------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE-- 168 (280)
Q Consensus 127 ~~~~~~~~----------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~-- 168 (280)
|. ..+++ ...+.++.++++++ ||||+..|++||||||.+.+
T Consensus 83 QD-ARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 83 QD-ARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred ec-cccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 42 11111 12345677777766 78999999999999995543
Q ss_pred ----HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563 169 ----DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR 231 (280)
Q Consensus 169 ----~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~ 231 (280)
+++-.|+++.++.++.|+.|||.++++.+ +||+|++|++ ++.+.|+.+++..+
T Consensus 162 ~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~R----------LAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 162 PRKREILPYLERLRDEINIPILYVSHSLDEVLR----------LADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred chhhHHHHHHHHHHHhcCCCEEEEecCHHHHHh----------hhheEEEecCCeEEecCcHHHHhcC
Confidence 58999999999999999999999999987 9999999999 99999999998744
No 332
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.89 E-value=1e-22 Score=201.48 Aligned_cols=159 Identities=17% Similarity=0.155 Sum_probs=105.2
Q ss_pred cEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------ccccccc
Q 023563 52 MVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTRYGLD 123 (280)
Q Consensus 52 ~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~~~~~ 123 (280)
.|+++|++++|++ .++|+|+||+|++|+.++|+||||||||||+ ++|.|+.. ....+.+-..+. ..+..+.
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~-~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 400 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLA-MLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS 400 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE
Confidence 5999999999964 5699999999999999999999999999999 99999732 222221111100 0112222
Q ss_pred eeeeecccc----------------cccccc----------------cCch-HHHHH--HhhhhccCCCEEEEeCcccHH
Q 023563 124 SIVTHDGVK----------------LPCCAL----------------TTLS-SFRQK--FGSDAYDQVDVIGIDEAQFFE 168 (280)
Q Consensus 124 ~v~~~~~~~----------------~~~~~~----------------~~l~-~~~~~--~a~aL~~~p~lLlLDEP~~~~ 168 (280)
++.|..... ...+.. .+++ ..++| .|||++.+|++||||||++..
T Consensus 401 ~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~L 480 (547)
T PRK10522 401 AVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQ 480 (547)
T ss_pred EEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 222210000 000000 1121 11122 278999999999999998765
Q ss_pred H------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 169 D------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 169 ~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
| +++.+.++.++.|+|+|++||+++.+. .||+|++|++ +++..
T Consensus 481 D~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-----------~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 481 DPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-----------HADRLLEMRNGQLSEL 530 (547)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-----------hCCEEEEEECCEEEEe
Confidence 3 556665554334899999999998765 7999999998 76543
No 333
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.89 E-value=1e-22 Score=178.66 Aligned_cols=150 Identities=14% Similarity=0.115 Sum_probs=95.7
Q ss_pred eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-ccccccceeee----eccccc-----c
Q 023563 66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-DTRYGLDSIVT----HDGVKL-----P 134 (280)
Q Consensus 66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-~~~~~~~~v~~----~~~~~~-----~ 134 (280)
.+|+||||+|++|++++|+||||||||||+ ++|+|+.. ....+..+.... ..... ..++. .++... .
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLl-k~i~Gl~~~~sG~i~~~~~~~~~~~~~-~~l~~~ltv~enl~~~~~~~~ 78 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLT-RLLCGLDAPDEGDFIGLRGDALPLGAN-SFILPGLTGEENARMMASLYG 78 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCccCCCCCEEEecCceeccccc-cccCCcCcHHHHHHHHHHHcC
Confidence 379999999999999999999999999999 99999842 222332111100 00000 00000 000000 0
Q ss_pred ---------cccccCchHHHHH--------------HhhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEE
Q 023563 135 ---------CCALTTLSSFRQK--------------FGSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTV 185 (280)
Q Consensus 135 ---------~~~~~~l~~~~~~--------------~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tv 185 (280)
.....++....++ .+++++.+|+++|||||++.. .+++.+.+..+ +.++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~--~~~i 156 (213)
T PRK15177 79 LDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ--QKGL 156 (213)
T ss_pred CCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh--CCcE
Confidence 0001112111111 167899999999999995433 35555544333 5689
Q ss_pred EEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 186 IVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 186 iivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|++||+++++.+ +||++++|++ ++++.++.++..
T Consensus 157 i~vsH~~~~~~~----------~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 157 IVLTHNPRLIKE----------HCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred EEEECCHHHHHH----------hcCeeEEEECCeEEEeCCHHHHH
Confidence 999999999976 9999999999 999888877663
No 334
>KOG3125 consensus Thymidine kinase [Nucleotide transport and metabolism]
Probab=99.89 E-value=1.4e-22 Score=171.47 Aligned_cols=198 Identities=61% Similarity=1.020 Sum_probs=172.8
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhh-hhc
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGS-DAY 153 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~-aL~ 153 (280)
-.+|++..|+||+-|||||-|++.+-.....|+.+..+....+.|+.-..+..+++.-.+.+...+ ..+..+++. ++-
T Consensus 24 ~t~G~i~vI~gPMfSGKTt~LLrr~r~~~~~grrv~liK~~kDTRy~~~si~Thdg~~~~c~~lp~-a~~~s~f~~d~~~ 102 (234)
T KOG3125|consen 24 MTRGTIHVILGPMFSGKTTELLRRIRREIIAGRRVLLIKYAKDTRYESSSIVTHDGIEMPCWALPD-ASFLSEFGKDALN 102 (234)
T ss_pred CCCceEEEEeccccCcchHHHHHHHHHHHhcCceEEEEEecCCcccchheeEeccCCcccccccCC-chhHHHHHHHHhc
Confidence 457999999999999999999777777788899999999988888887778888887777776666 455565654 455
Q ss_pred cCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeec
Q 023563 154 DQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKT 233 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~ 233 (280)
.+-++|.+||.+|..++++..+++++.+|++|++...|-++-+++|+.+.+|+++||.|.-|..+|.+||.-+.+..|.+
T Consensus 103 ~~vdVigIDEaQFf~dl~efc~evAd~~Gk~VivagLdgdF~Rk~Fg~il~Lvplad~v~kLtavC~~Cg~~a~Ft~R~~ 182 (234)
T KOG3125|consen 103 GDVDVIGIDEAQFFGDLYEFCREVADVHGKTVIVAGLDGDFKRKPFGAILDLVPLADSVTKLTAVCEECGADARFTLRKT 182 (234)
T ss_pred CcceEEEecHHHHhHHHHHHHHHHHhccCCEEEEEecCCchhhCcchhhhhhHhhhhhhhhhhhhhhhhcccceeEeeec
Confidence 68999999999999999999999999679999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEeCCccceeeeccchhc-cCcchhHhhhchhcccc
Q 023563 234 EETKTELIGGSDIYMPVCRQHYV-SGQVVVEAARIVLESQK 273 (280)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~ 273 (280)
.+...+++|+.+.|.+.||+||. -++...+..+++.|.+.
T Consensus 183 ~~K~ve~iggaDvy~pvcr~~yv~~~~~~~e~~kt~~e~~d 223 (234)
T KOG3125|consen 183 NDKEVEVIGGADVYMPVCRKCYVVCGQCATEKTKTVCEVSD 223 (234)
T ss_pred CCceeEEccCcceeecccceeEEEeccccchhhccccccCC
Confidence 99999999999999999999998 45555556666666654
No 335
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.88 E-value=7e-23 Score=202.96 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=103.0
Q ss_pred cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc------ccc
Q 023563 52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------DTR 119 (280)
Q Consensus 52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------~~~ 119 (280)
.|+++||+++|++ +.+|+|+||+|++|++++|+||||||||||+ ++|.|+.. ....+.+-..+. ..+
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~-~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLA-KLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 5999999999975 2599999999999999999999999999999 99999732 222222111000 011
Q ss_pred cccceeeeecccc-----------------cccccccC-----------------chH-HHHHH--hhhhccCCCEEEEe
Q 023563 120 YGLDSIVTHDGVK-----------------LPCCALTT-----------------LSS-FRQKF--GSDAYDQVDVIGID 162 (280)
Q Consensus 120 ~~~~~v~~~~~~~-----------------~~~~~~~~-----------------l~~-~~~~~--a~aL~~~p~lLlLD 162 (280)
..++++.|..... ...+...+ ++. ..+|. ||+++.+|++||||
T Consensus 416 ~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililD 495 (555)
T TIGR01194 416 DLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFD 495 (555)
T ss_pred hhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 2222333211000 00011111 211 11222 78999999999999
Q ss_pred CcccHHH------HHHHHH-HHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563 163 EAQFFED------LYDFCR-EAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE 220 (280)
Q Consensus 163 EP~~~~~------i~~~l~-~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~ 220 (280)
||++..| +.+.+. .+.. .|+|+|++||+++.+. .||+|++|++ +++
T Consensus 496 E~ts~LD~~~~~~i~~~l~~~~~~-~~~tiiiisH~~~~~~-----------~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 496 EWAADQDPAFKRFFYEELLPDLKR-QGKTIIIISHDDQYFE-----------LADQIIKLAAGCIV 549 (555)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHH-----------hCCEEEEEECCEEE
Confidence 9987653 444343 3433 3899999999998764 7999999998 765
No 336
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.88 E-value=3.6e-23 Score=224.57 Aligned_cols=164 Identities=20% Similarity=0.161 Sum_probs=116.1
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCee------------E
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRN------------V 109 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~------------i 109 (280)
-|+++||+++|+. ..+|+||||+|++||.+||+|++|||||||+ ++|.++. ++|.+ +
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~-~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLT-LGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence 5999999999964 4699999999999999999999999999999 9999872 24433 4
Q ss_pred EEecCCccc-----ccccceeee-ecccccccccccCchHH-----------------------HHHH--hhhhccCCCE
Q 023563 110 AVIKSNKDT-----RYGLDSIVT-HDGVKLPCCALTTLSSF-----------------------RQKF--GSDAYDQVDV 158 (280)
Q Consensus 110 ~~~~~~~~~-----~~~~~~v~~-~~~~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p~l 158 (280)
++++|++.. +.++...-. .+.....++...++.++ +++. ||||+.+|++
T Consensus 1363 ~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1442 (1522)
T TIGR00957 1363 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442 (1522)
T ss_pred eEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 455554321 111110000 00000001111111111 1111 7899999999
Q ss_pred EEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||||||+..| +.+.|++..+ ++|+|+|+|+++.+. .||+|++|++ ++++.|++++++
T Consensus 1443 LiLDEaTSalD~~Te~~Iq~~l~~~~~--~~TvI~IAHRl~ti~-----------~~DrIlVld~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957 1443 LVLDEATAAVDLETDNLIQSTIRTQFE--DCTVLTIAHRLNTIM-----------DYTRVIVLDKGEVAEFGAPSNLL 1507 (1522)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence 99999987653 5566665543 899999999999987 5999999999 999999999987
No 337
>PTZ00243 ABC transporter; Provisional
Probab=99.88 E-value=4.4e-23 Score=223.86 Aligned_cols=164 Identities=17% Similarity=0.091 Sum_probs=114.8
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCee------------E
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRN------------V 109 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~------------i 109 (280)
-|+++||+++|.+ ..+|+||||+|++||.+||+|++|||||||+ ++|.|+. ++|.+ +
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl-~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLL-LTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence 5999999999954 4599999999999999999999999999999 9999873 24443 3
Q ss_pred EEecCCccc-----ccccceeee-ecccccccccccCchHHH-----------------------HH--HhhhhccC-CC
Q 023563 110 AVIKSNKDT-----RYGLDSIVT-HDGVKLPCCALTTLSSFR-----------------------QK--FGSDAYDQ-VD 157 (280)
Q Consensus 110 ~~~~~~~~~-----~~~~~~v~~-~~~~~~~~~~~~~l~~~~-----------------------~~--~a~aL~~~-p~ 157 (280)
++++|++.. +.++...-. .+.....++...++.++. ++ .||||+.+ |+
T Consensus 1387 ~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243 1387 SMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred eEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence 444444321 111110000 000000111111222111 11 17899985 89
Q ss_pred EEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+|||||||+..| +.+.|++..+ ++|+|+|+|.++.+. .||+|++|++ ++++.|+++++.
T Consensus 1467 ILlLDEATSaLD~~te~~Iq~~L~~~~~--~~TvI~IAHRl~ti~-----------~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1467 FILMDEATANIDPALDRQIQATVMSAFS--AYTVITIAHRLHTVA-----------QYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHCC--CCEEEEEeccHHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence 999999988643 5566665533 899999999999886 6999999999 999999999987
No 338
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.88 E-value=1.4e-22 Score=204.41 Aligned_cols=155 Identities=12% Similarity=0.083 Sum_probs=107.4
Q ss_pred ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C-------CeeEEEecCCccccc
Q 023563 51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K-------GRNVAVIKSNKDTRY 120 (280)
Q Consensus 51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~-------g~~i~~~~~~~~~~~ 120 (280)
.+|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. . ...+++++|++....
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl-~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~ 528 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLF-RILGELWPVYGGRLTKPAKGKLFYVPQRPYMTL 528 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCeEeecCCCcEEEECCCCCCCC
Confidence 4799999999994 56899999999999999999999999999999 99999843 1 235677777643211
Q ss_pred -ccceeee----------e---cccccccccccCchHHHHH-----------------------HhhhhccCCCEEEEeC
Q 023563 121 -GLDSIVT----------H---DGVKLPCCALTTLSSFRQK-----------------------FGSDAYDQVDVIGIDE 163 (280)
Q Consensus 121 -~~~~v~~----------~---~~~~~~~~~~~~l~~~~~~-----------------------~a~aL~~~p~lLlLDE 163 (280)
.+...+. . .......+...++.++.++ .||+++.+|++|||||
T Consensus 529 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDE 608 (659)
T TIGR00954 529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE 608 (659)
T ss_pred cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 1100000 0 0000111222233322211 1689999999999999
Q ss_pred cccHHH--HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 164 AQFFED--LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 164 P~~~~~--i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
|++..| ..+.+.++.++.|+|+|++||+++.+. +||++++|+.
T Consensus 609 pts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~-----------~~d~il~l~~ 653 (659)
T TIGR00954 609 CTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWK-----------YHEYLLYMDG 653 (659)
T ss_pred CccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHH-----------hCCEEEEEeC
Confidence 988764 233344444445999999999999875 8999999975
No 339
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.88 E-value=7e-23 Score=221.03 Aligned_cols=166 Identities=15% Similarity=0.173 Sum_probs=115.1
Q ss_pred cEEEcCceEEeC---CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-----------------------
Q 023563 52 MVSPRPPLFSLQ---NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK----------------------- 105 (280)
Q Consensus 52 ~l~~~~ls~~y~---~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~----------------------- 105 (280)
-|+++||+|+|. +.++|+|+||+|++|+.+||+||||||||||+ ++|.|+...
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~-~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVM-SLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHH-HHHHHhCCCccccccccccccccccccccccc
Confidence 499999999995 34799999999999999999999999999999 999997442
Q ss_pred --------------------------------CeeEEEecCC------cccccccceeeeecccc---------c-----
Q 023563 106 --------------------------------GRNVAVIKSN------KDTRYGLDSIVTHDGVK---------L----- 133 (280)
Q Consensus 106 --------------------------------g~~i~~~~~~------~~~~~~~~~v~~~~~~~---------~----- 133 (280)
...|.+-..+ ...|..++++.|...++ .
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~a 1323 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDA 1323 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCC
Confidence 2222211111 01123334444321110 0
Q ss_pred ------ccccccCchHHHH-----------------------HH--hhhhccCCCEEEEeCcccHHH------HHHHHHH
Q 023563 134 ------PCCALTTLSSFRQ-----------------------KF--GSDAYDQVDVIGIDEAQFFED------LYDFCRE 176 (280)
Q Consensus 134 ------~~~~~~~l~~~~~-----------------------~~--a~aL~~~p~lLlLDEP~~~~~------i~~~l~~ 176 (280)
.+....++.++.. |. ||||+.+|++|||||||+.+| +.+.|.+
T Consensus 1324 t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265 1324 TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVD 1403 (1466)
T ss_pred CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 0011112222211 11 789999999999999988764 6677777
Q ss_pred HHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-----e-eccccCcceee
Q 023563 177 AADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-----R-CEFCGKRAFFT 229 (280)
Q Consensus 177 l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-----~-i~~~g~~~~~~ 229 (280)
+.+..++|+|+|+|.+..+. .||+|++|++ + +++.|+.++++
T Consensus 1404 ~~~~~~~TvIiIaHRlsti~-----------~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1404 IKDKADKTIITIAHRIASIK-----------RSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred HhccCCCEEEEEechHHHHH-----------hCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 75223899999999999886 6999999986 4 34789998887
No 340
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=99.88 E-value=2.8e-22 Score=171.06 Aligned_cols=173 Identities=46% Similarity=0.789 Sum_probs=136.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccc--cccCchHHHHHHhhhhccC
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCC--ALTTLSSFRQKFGSDAYDQ 155 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~l~~~~~~~a~aL~~~ 155 (280)
|+++.+.||++|||||.|++.+..+...|+++..+.+..+.|+....+..+.+...++. ....+.++.. .+..+
T Consensus 1 g~l~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D~R~~~~~I~s~~g~~~~~~~~~~~~~~~~~~----~~~~~ 76 (176)
T PF00265_consen 1 GKLEFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAIDTRYGEDKIVSHDGISLEAIVDPIDNLFEIID----ILEND 76 (176)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEESTSCCCCSSEEEHTTSCEEEEESSEESSGGGGGG----GCCTT
T ss_pred CEEEEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecccCcCCCCeEEecCCCcccccccchhhHHHHHH----HhccC
Confidence 78999999999999999988888888899999999998888887766777777655544 2233333322 23445
Q ss_pred CCEEEEeCcccHH-HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeecC
Q 023563 156 VDVIGIDEAQFFE-DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE 234 (280)
Q Consensus 156 p~lLlLDEP~~~~-~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~~ 234 (280)
+++++.||.+|.. ++.+++..+.+. |+.|++.+.|.++-.++|+++..|+++||.|.-|+..|..||.++....|...
T Consensus 77 ~dvI~IDEaQFf~~~i~~l~~~~~~~-g~~Vi~~GL~~df~~~~F~~~~~Ll~~Ad~i~kl~avC~~Cg~~A~~t~R~~~ 155 (176)
T PF00265_consen 77 YDVIGIDEAQFFDEQIVQLVEILANK-GIPVICAGLDTDFRGEPFGGSPRLLPLADKITKLKAVCEVCGRKATFTQRIVD 155 (176)
T ss_dssp CSEEEESSGGGSTTTHHHHHHHHHHT-T-EEEEEEESB-TTSSB-TTHHHHHHH-SEEEEE-EE-TTTSSEE-EEEEEET
T ss_pred CCEEEEechHhhHHHHHHHHHHHHhC-CCeEEEEeeCCccccCcchhHHHHHhhCCeEEEeccEECCCCCceeEEEEEcC
Confidence 9999999998877 788888887765 99999999999999999999999999999999999999999999999989887
Q ss_pred CCcEEEeCCccceeeeccchh
Q 023563 235 ETKTELIGGSDIYMPVCRQHY 255 (280)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~ 255 (280)
......+|+++.|.++||+||
T Consensus 156 ~~~~i~iGg~e~Y~~~Cr~cy 176 (176)
T PF00265_consen 156 DGEQILIGGSEKYEPVCRKCY 176 (176)
T ss_dssp TSSSS-TTSTTTEEEE-CTTH
T ss_pred CCCEEEECCCCeEEEechhhC
Confidence 777778899999999999998
No 341
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=5.6e-23 Score=171.69 Aligned_cols=155 Identities=18% Similarity=0.202 Sum_probs=109.2
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCeeEEEecCCcccccccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRNVAVIKSNKDTRYGLD 123 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~i~~~~~~~~~~~~~~ 123 (280)
.++++++.+.-++.++|+++||++.+||+++|.||||||||||+ ++++.+ .+.|+++....+. ..|..+.
T Consensus 3 lle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStll-k~va~Lisp~~G~l~f~Ge~vs~~~pe-a~Rq~Vs 80 (223)
T COG4619 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLL-KIVASLISPTSGTLLFEGEDVSTLKPE-AYRQQVS 80 (223)
T ss_pred chHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHH-HHHHhccCCCCceEEEcCccccccChH-HHHHHHH
Confidence 56778887777889999999999999999999999999999999 988886 3345555433332 1233344
Q ss_pred eeeeec---------cccccccccc---C---chHHHHHH------------------------hhhhccCCCEEEEeCc
Q 023563 124 SIVTHD---------GVKLPCCALT---T---LSSFRQKF------------------------GSDAYDQVDVIGIDEA 164 (280)
Q Consensus 124 ~v~~~~---------~~~~~~~~~~---~---l~~~~~~~------------------------a~aL~~~p~lLlLDEP 164 (280)
++.|+. +..++..... + ...+..++ .|.|..-|++||||||
T Consensus 81 Y~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 81 YCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred HHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 443322 2222211000 0 01111111 3457789999999999
Q ss_pred ccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeece
Q 023563 165 QFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTAR 218 (280)
Q Consensus 165 ~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~ 218 (280)
|+.+| +-++|.++.++.+++++++|||.+.+.+ ++|+++-+...
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~r----------ha~k~itl~~G 210 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIR----------HADKVITLQPG 210 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhh----------hhheEEEeccC
Confidence 87764 7788888886679999999999999876 99999998773
No 342
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.88 E-value=1.6e-22 Score=219.15 Aligned_cols=164 Identities=16% Similarity=0.124 Sum_probs=115.7
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-------CCe------------eEE
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-------KGR------------NVA 110 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-------~g~------------~i~ 110 (280)
-|+++||+++|+. ..+|+||||+|++||.+||+|++|||||||+ ++|.|+.. +|. .++
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl-~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLL-SALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHH-HHHhhhcCCCcEEEECCEEcccCCHHHHHhceE
Confidence 5999999999963 6799999999999999999999999999999 99988743 222 234
Q ss_pred EecCCccc-----ccccceeee-ecccccccccccCchHH-----------------------HHH--HhhhhccCCCEE
Q 023563 111 VIKSNKDT-----RYGLDSIVT-HDGVKLPCCALTTLSSF-----------------------RQK--FGSDAYDQVDVI 159 (280)
Q Consensus 111 ~~~~~~~~-----~~~~~~v~~-~~~~~~~~~~~~~l~~~-----------------------~~~--~a~aL~~~p~lL 159 (280)
+++|++.. |.++...-. .+.....++...++.++ +++ .||||+.+|+||
T Consensus 1296 ~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~IL 1375 (1490)
T TIGR01271 1296 VIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKIL 1375 (1490)
T ss_pred EEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEE
Confidence 44444321 111100000 00000011111111111 111 178999999999
Q ss_pred EEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 160 GIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 160 lLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||||+..| +.+.|++..+ ++|||+|+|.++.+. .||+|++|++ +++..|+|.++.
T Consensus 1376 lLDEaTS~lD~~Te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-----------~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1376 LLDEPSAHLDPVTLQIIRKTLKQSFS--NCTVILSEHRVEALL-----------ECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-----------hCCEEEEEECCEEEEeCCHHHHH
Confidence 9999987653 6666666543 899999999999886 6999999999 999999999987
No 343
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.87 E-value=1.8e-22 Score=217.86 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=47.4
Q ss_pred cEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 52 MVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 52 ~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
-|+++||+++|++ ..+|+|+||+|++|++++|+||||||||||+ ++|.|+.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl-~lL~gl~ 435 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTIL-KLIERLY 435 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHH-HHHHHhc
Confidence 5999999999975 3699999999999999999999999999999 9999973
No 344
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.87 E-value=8.4e-23 Score=200.98 Aligned_cols=138 Identities=22% Similarity=0.221 Sum_probs=92.9
Q ss_pred cEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCe-----------eEEE
Q 023563 52 MVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGR-----------NVAV 111 (280)
Q Consensus 52 ~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~-----------~i~~ 111 (280)
-|+++||+++|++ +.+|+|+||+|++|+.++|+||||||||||+ ++|.|+. ++|. .+++
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl-~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~ 412 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLL-MLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISV 412 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEE
Confidence 4999999999965 5699999999999999999999999999999 9999973 2342 3556
Q ss_pred ecCCccc-----ccccceeee--ecccccccccccCchHHH-----------------------HHH--hhhhccCCCEE
Q 023563 112 IKSNKDT-----RYGLDSIVT--HDGVKLPCCALTTLSSFR-----------------------QKF--GSDAYDQVDVI 159 (280)
Q Consensus 112 ~~~~~~~-----~~~~~~v~~--~~~~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p~lL 159 (280)
++|++.. +.++...-. .+.....++...++.++. +|. |||++.+|++|
T Consensus 413 V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~il 492 (529)
T TIGR02868 413 FAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPIL 492 (529)
T ss_pred EccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 6665432 111100000 000001111111222221 121 78999999999
Q ss_pred EEeCcccHHH------HHHHHHHHHhhcCCEEEEEEech
Q 023563 160 GIDEAQFFED------LYDFCREAADHDGKTVIVAGLDG 192 (280)
Q Consensus 160 lLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl 192 (280)
||||||+..| +.+.+.++. .++|+|++||++
T Consensus 493 iLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 493 LLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 9999987654 666666553 289999999984
No 345
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=1.3e-22 Score=171.82 Aligned_cols=170 Identities=15% Similarity=0.175 Sum_probs=120.8
Q ss_pred ccEEEcCceEEeCC---------eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC-------
Q 023563 51 SMVSPRPPLFSLQN---------RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------- 106 (280)
Q Consensus 51 ~~l~~~~ls~~y~~---------~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------- 106 (280)
++++++|++|.|.. ..+++.|||++++|+..+|+|.||||||||. ++++|... ++
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLa-kMlaGmi~PTsG~il~n~~~L~~~D 81 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLA-KMLAGMIEPTSGEILINDHPLHFGD 81 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHH-HHHhcccCCCCceEEECCccccccc
Confidence 47899999998842 4689999999999999999999999999999 99999732 12
Q ss_pred -----eeEEEecCCccc----ccccceeeee-------------cccccccccccCc-------------hHHHHH--Hh
Q 023563 107 -----RNVAVIKSNKDT----RYGLDSIVTH-------------DGVKLPCCALTTL-------------SSFRQK--FG 149 (280)
Q Consensus 107 -----~~i~~~~~~~~~----~~~~~~v~~~-------------~~~~~~~~~~~~l-------------~~~~~~--~a 149 (280)
+.|..++|++.. |..++.+... ....++.+..+++ .....+ .|
T Consensus 82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLA 161 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALA 161 (267)
T ss_pred hHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHH
Confidence 122233332221 1111111110 0000111111111 001111 17
Q ss_pred hhhccCCCEEEEeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 150 SDAYDQVDVIGIDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
|||+.+|+++|.||... +.++.+++.++.++.|++.|.|+.++..+.- ++|.|++|+. +++..
T Consensus 162 RALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKH----------i~D~viVM~EG~vvE~ 231 (267)
T COG4167 162 RALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKH----------ISDQVLVMHEGEVVER 231 (267)
T ss_pred HHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhh----------hcccEEEEecCceeec
Confidence 89999999999999943 4468899999999999999999999999986 8999999999 99999
Q ss_pred cCcceeeee
Q 023563 223 GKRAFFTLR 231 (280)
Q Consensus 223 g~~~~~~~~ 231 (280)
|++.+++..
T Consensus 232 G~t~~v~a~ 240 (267)
T COG4167 232 GSTADVLAS 240 (267)
T ss_pred CChhhhhcC
Confidence 999999843
No 346
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.87 E-value=5.6e-22 Score=213.52 Aligned_cols=166 Identities=16% Similarity=0.193 Sum_probs=114.0
Q ss_pred ccEEEcCceEEeC----CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh----CCeeEEEecCCc--cccc
Q 023563 51 SMVSPRPPLFSLQ----NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ----KGRNVAVIKSNK--DTRY 120 (280)
Q Consensus 51 ~~l~~~~ls~~y~----~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~----~g~~i~~~~~~~--~~~~ 120 (280)
.+++++||++.|+ ++.+|+|||++|++|++++|+||||||||||+ ++|+|+.. ....+.+-.... ..+.
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL-~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLL-NVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHH-HHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 3689999999994 46799999999999999999999999999999 99999753 212222211110 1122
Q ss_pred ccceeeeeccccc------------------------------ccccccCchHHH----------------HH--Hhhhh
Q 023563 121 GLDSIVTHDGVKL------------------------------PCCALTTLSSFR----------------QK--FGSDA 152 (280)
Q Consensus 121 ~~~~v~~~~~~~~------------------------------~~~~~~~l~~~~----------------~~--~a~aL 152 (280)
.++++.|++.... ..+...++.+.+ ++ .|++|
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL 916 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVEL 916 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHH
Confidence 2333333211100 001111111111 11 16789
Q ss_pred ccCCC-EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec--eecccc
Q 023563 153 YDQVD-VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA--RCEFCG 223 (280)
Q Consensus 153 ~~~p~-lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~--~i~~~g 223 (280)
+.+|+ +|+|||||+.+ .+++.|++++++ |+|||+++|+++... +..+|++++|++ ++++.|
T Consensus 917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~-g~tvI~t~H~~~~~~---------~~~~D~vl~L~~GG~iv~~G 986 (1394)
T TIGR00956 917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQPSAIL---------FEEFDRLLLLQKGGQTVYFG 986 (1394)
T ss_pred HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHH---------HHhcCEEEEEcCCCEEEEEC
Confidence 99997 99999997755 488999999875 999999999998632 127999999985 788999
Q ss_pred Ccce
Q 023563 224 KRAF 227 (280)
Q Consensus 224 ~~~~ 227 (280)
++.+
T Consensus 987 ~~~~ 990 (1394)
T TIGR00956 987 DLGE 990 (1394)
T ss_pred Cccc
Confidence 8754
No 347
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=6.5e-22 Score=162.73 Aligned_cols=149 Identities=15% Similarity=0.165 Sum_probs=101.3
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-----------hhCCeeEEEecCCccccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-----------TQKGRNVAVIKSNKDTRY 120 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-----------~~~g~~i~~~~~~~~~~~ 120 (280)
|+.++||+.+.+++-+|-++||+|.+|||+.|+||||||||||+ ..+.|. ..+++++..++.. +.
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLl-s~~~G~La~~F~~~G~~~l~~~~l~~lPa~---qR 77 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLL-SWMIGALAGQFSCTGELWLNEQRLDMLPAA---QR 77 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHH-HHHHhhcccCcceeeEEEECCeeccccchh---hh
Confidence 68999999999999999999999999999999999999999999 877774 2344444433322 22
Q ss_pred ccceeeeeccccccc---------------------------ccccCchHHHHHH--------------hhhhccCCCEE
Q 023563 121 GLDSIVTHDGVKLPC---------------------------CALTTLSSFRQKF--------------GSDAYDQVDVI 159 (280)
Q Consensus 121 ~~~~v~~~~~~~~~~---------------------------~~~~~l~~~~~~~--------------a~aL~~~p~lL 159 (280)
.++.+|| +.++++. +...++..+..+. -|+|+.+|+.+
T Consensus 78 q~GiLFQ-D~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~l 156 (213)
T COG4136 78 QIGILFQ-DALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKAL 156 (213)
T ss_pred heeeeec-ccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCccee
Confidence 2232332 2222221 2222233222221 24788999999
Q ss_pred EEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563 160 GIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT 216 (280)
Q Consensus 160 lLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~ 216 (280)
+||||.+++| .++.+-.-..+.|+..|+||||.+.+. ...||+-|.
T Consensus 157 LLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-----------agsrVie~~ 208 (213)
T COG4136 157 LLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-----------AGSRVIEMA 208 (213)
T ss_pred eeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-----------CCCeeeeee
Confidence 9999988765 344443333445999999999999875 466666553
No 348
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.86 E-value=3.8e-22 Score=190.02 Aligned_cols=168 Identities=21% Similarity=0.212 Sum_probs=123.6
Q ss_pred cEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------------------hCCeeE
Q 023563 52 MVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------------------QKGRNV 109 (280)
Q Consensus 52 ~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------------------~~g~~i 109 (280)
.|.++++++.=. ++++++|+||++.+||.+|||||||||||||. |+|.|.. ..|+.|
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLa-R~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLA-RLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHH-HHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 589999987553 36899999999999999999999999999999 9999962 257788
Q ss_pred EEecCCcccccc-cceeeeecc------ccccccccc----------------------Cc-hHHHHHH--hhhhccCCC
Q 023563 110 AVIKSNKDTRYG-LDSIVTHDG------VKLPCCALT----------------------TL-SSFRQKF--GSDAYDQVD 157 (280)
Q Consensus 110 ~~~~~~~~~~~~-~~~v~~~~~------~~~~~~~~~----------------------~l-~~~~~~~--a~aL~~~p~ 157 (280)
+|++|+...-.+ +...+.+.. ...++.... .+ ...+++. ||||..+|.
T Consensus 413 GYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~ 492 (580)
T COG4618 413 GYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPF 492 (580)
T ss_pred CcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCc
Confidence 888887553211 000000000 000000000 11 1222333 689999999
Q ss_pred EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563 158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL 230 (280)
Q Consensus 158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~ 230 (280)
+++||||.+.+ .+.+.|..++++ |.|+|++||...... .+|+|.+|++ ++...|+.+|+..
T Consensus 493 lvVLDEPNsNLD~~GE~AL~~Ai~~~k~r-G~~vvviaHRPs~L~-----------~~Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 493 LVVLDEPNSNLDSEGEAALAAAILAAKAR-GGTVVVIAHRPSALA-----------SVDKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred EEEecCCCCCcchhHHHHHHHHHHHHHHc-CCEEEEEecCHHHHh-----------hcceeeeecCChHHhcCCHHHHHH
Confidence 99999995443 378888888876 999999999999876 7999999999 9999999999885
Q ss_pred ee
Q 023563 231 RK 232 (280)
Q Consensus 231 ~~ 232 (280)
..
T Consensus 561 ~~ 562 (580)
T COG4618 561 KV 562 (580)
T ss_pred Hh
Confidence 43
No 349
>PRK13409 putative ATPase RIL; Provisional
Probab=99.86 E-value=4.2e-22 Score=198.50 Aligned_cols=147 Identities=18% Similarity=0.135 Sum_probs=98.4
Q ss_pred CceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEE-----------EecCCc-------
Q 023563 57 PPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVA-----------VIKSNK------- 116 (280)
Q Consensus 57 ~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~-----------~~~~~~------- 116 (280)
+++++||+ ..+|++++ .+++|+++||+||||||||||+ ++|+|+.. +...+. +...+.
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLl-kiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAV-KILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHH-HHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 38999987 46999999 9999999999999999999999 99999732 223332 111000
Q ss_pred -ccccccceeeeeccc---------------------ccccccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563 117 -DTRYGLDSIVTHDGV---------------------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 117 -~~~~~~~~v~~~~~~---------------------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLl 160 (280)
.....+...++.... ....+...++....++. |++|+.+|++||
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lll 235 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYF 235 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 000001111110000 00011112222222111 568999999999
Q ss_pred EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
||||++.+ .+.++|+++++ |+|||++|||++++.+ +||+|++|.+
T Consensus 236 LDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~~l~~----------~~D~v~vl~~ 286 (590)
T PRK13409 236 FDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDY----------LADNVHIAYG 286 (590)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHH----------hCCEEEEEeC
Confidence 99997755 47788888865 9999999999999986 9999999976
No 350
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.86 E-value=7.4e-22 Score=197.94 Aligned_cols=155 Identities=21% Similarity=0.192 Sum_probs=105.8
Q ss_pred CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC----eeEEEecCCc---ccccccceeeeeccccc--
Q 023563 63 QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG----RNVAVIKSNK---DTRYGLDSIVTHDGVKL-- 133 (280)
Q Consensus 63 ~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g----~~i~~~~~~~---~~~~~~~~v~~~~~~~~-- 133 (280)
+++.+|+|+|++|++||+++|+||||||||||+ ++|+|....+ .++.+-.... ..+..++++.|++....
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL-~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLM-NALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 356799999999999999999999999999999 9999964321 2222111100 01112223322211000
Q ss_pred ----------------------------ccccccC-----------------chHHH-HH--HhhhhccCCCEEEEeCcc
Q 023563 134 ----------------------------PCCALTT-----------------LSSFR-QK--FGSDAYDQVDVIGIDEAQ 165 (280)
Q Consensus 134 ----------------------------~~~~~~~-----------------l~~~~-~~--~a~aL~~~p~lLlLDEP~ 165 (280)
..+...+ ++.=. +| .|++|+.+|++|+||||+
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 0000001 11111 11 167899999999999997
Q ss_pred cHHH------HHHHHHHHHhhcCCEEEEEEechh-HhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 166 FFED------LYDFCREAADHDGKTVIVAGLDGD-YLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 166 ~~~~------i~~~l~~l~~~~g~tviivtHdl~-~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+.+| +++.|++++++ |+|||+++|++. ++.+ +||++++|++ ++++.|+++++.
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~----------~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFE----------LFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHH----------HhceEEEeeCCeEEEECCHHHHH
Confidence 7654 88999999875 999999999985 5554 8999999999 999999998774
No 351
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=6.1e-22 Score=204.89 Aligned_cols=164 Identities=19% Similarity=0.224 Sum_probs=116.3
Q ss_pred cEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCee------------
Q 023563 52 MVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRN------------ 108 (280)
Q Consensus 52 ~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~------------ 108 (280)
-|+++||+|+|.. ..+|+|+||+|++|+.++|||||||||||.+ .+|..+. ++|.+
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI-~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~ 1065 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVI-SLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQ 1065 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHH-HHHHHhcCCCCCeEEECCcccccCCHHHHHHh
Confidence 4999999999965 4699999999999999999999999999999 8888762 23333
Q ss_pred EEEecCCccc-----cccccee---eeeccccccccccc----------------------Cch-HHHHHH--hhhhccC
Q 023563 109 VAVIKSNKDT-----RYGLDSI---VTHDGVKLPCCALT----------------------TLS-SFRQKF--GSDAYDQ 155 (280)
Q Consensus 109 i~~~~~~~~~-----~~~~~~v---~~~~~~~~~~~~~~----------------------~l~-~~~~~~--a~aL~~~ 155 (280)
++.+.|.+.. +.++.+- +.... ..++.... +++ ...+|. |||++.+
T Consensus 1066 i~lVsQEP~LF~~TIrENI~YG~~~vs~~e-Ii~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1066 IGLVSQEPVLFNGTIRENIAYGSEEVSEEE-IIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred cceeccCchhhcccHHHHHhccCCCCCHHH-HHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence 3333333321 1111000 00000 00000000 111 111222 7899999
Q ss_pred CCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 156 VDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 156 p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
|++|||||.|+++| +.+.|.++.. |+|.|+|.|.+..+. -||.|+++++ ++++.|+.+++
T Consensus 1145 PkILLLDEATSALDseSErvVQeALd~a~~--gRT~IvIAHRLSTIq-----------naD~I~Vi~~G~VvE~GtH~~L 1211 (1228)
T KOG0055|consen 1145 PKILLLDEATSALDSESERVVQEALDRAME--GRTTIVIAHRLSTIQ-----------NADVIAVLKNGKVVEQGTHDEL 1211 (1228)
T ss_pred CCeeeeeccchhhhhhhHHHHHHHHHHhhc--CCcEEEEecchhhhh-----------cCCEEEEEECCEEEecccHHHH
Confidence 99999999999886 5666666653 999999999999997 6999999999 99999999999
Q ss_pred ee
Q 023563 229 TL 230 (280)
Q Consensus 229 ~~ 230 (280)
+.
T Consensus 1212 ~~ 1213 (1228)
T KOG0055|consen 1212 LA 1213 (1228)
T ss_pred Hh
Confidence 83
No 352
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.86 E-value=5.9e-22 Score=187.85 Aligned_cols=164 Identities=20% Similarity=0.213 Sum_probs=118.9
Q ss_pred cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCeeEEEecCCccccccc
Q 023563 52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRNVAVIKSNKDTRYGL 122 (280)
Q Consensus 52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~i~~~~~~~~~~~~~ 122 (280)
-|+++||++.|+ ++++|+||||++.+|+.++|+||||+||||++ |++-.+ .++|++|..+.+. ..|..+
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTim-RlLfRffdv~sGsI~iDgqdIrnvt~~-SLRs~I 614 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIM-RLLFRFFDVNSGSITIDGQDIRNVTQS-SLRSSI 614 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHH-HHHHHHhhccCceEEEcCchHHHHHHH-HHHHhc
Confidence 599999999995 68999999999999999999999999999999 888765 3344443322221 112223
Q ss_pred ceeeeeccccc------------cc----------------------------------ccccCchHHHHHHhhhhccCC
Q 023563 123 DSIVTHDGVKL------------PC----------------------------------CALTTLSSFRQKFGSDAYDQV 156 (280)
Q Consensus 123 ~~v~~~~~~~~------------~~----------------------------------~~~~~l~~~~~~~a~aL~~~p 156 (280)
+-+.|. ..++ +. +.+.+=+..+-..||+++.+|
T Consensus 615 GVVPQD-tvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 615 GVVPQD-TVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP 693 (790)
T ss_pred CcccCc-ceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence 222221 0000 00 001111111222267899999
Q ss_pred CEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
.+++|||.|+++| +...+.++++ |+|-|+|.|.+..+- .||.|+++++ +|++.|..+|+.
T Consensus 694 ~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLSTiv-----------nAD~ILvi~~G~IvErG~HeeLl 760 (790)
T KOG0056|consen 694 SIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLSTIV-----------NADLILVISNGRIVERGRHEELL 760 (790)
T ss_pred cEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehhee-----------cccEEEEEeCCeEeecCcHHHHH
Confidence 9999999988764 7788888886 899999999999886 5999999999 999999999998
Q ss_pred ee
Q 023563 230 LR 231 (280)
Q Consensus 230 ~~ 231 (280)
.|
T Consensus 761 ~r 762 (790)
T KOG0056|consen 761 KR 762 (790)
T ss_pred hc
Confidence 44
No 353
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.85 E-value=3e-21 Score=170.78 Aligned_cols=63 Identities=24% Similarity=0.281 Sum_probs=52.0
Q ss_pred hhhhccCC--CEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe-----
Q 023563 149 GSDAYDQV--DVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL----- 215 (280)
Q Consensus 149 a~aL~~~p--~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L----- 215 (280)
+++|+.+| ++||||||+.. ..+++.|++++++ |.|+|++|||++++. +||++++|
T Consensus 149 aral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~-g~tii~itH~~~~~~-----------~~d~i~~l~~~~~ 216 (226)
T cd03270 149 ATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDL-GNTVLVVEHDEDTIR-----------AADHVIDIGPGAG 216 (226)
T ss_pred HHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEEeCHHHHH-----------hCCEEEEeCCCcc
Confidence 67889898 59999999654 4578888888765 999999999999874 89999999
Q ss_pred -ec-eecccc
Q 023563 216 -TA-RCEFCG 223 (280)
Q Consensus 216 -~~-~i~~~g 223 (280)
++ +++++|
T Consensus 217 ~~~G~iv~~g 226 (226)
T cd03270 217 VHGGEIVAQG 226 (226)
T ss_pred ccCCEEEecC
Confidence 66 666554
No 354
>PLN03232 ABC transporter C family member; Provisional
Probab=99.85 E-value=2.2e-21 Score=210.43 Aligned_cols=163 Identities=20% Similarity=0.222 Sum_probs=116.4
Q ss_pred cEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CC------eeEEEecCCcccc-
Q 023563 52 MVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KG------RNVAVIKSNKDTR- 119 (280)
Q Consensus 52 ~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g------~~i~~~~~~~~~~- 119 (280)
.|+++|++++|++ +++|+|+||+|++|+.++|+||+|||||||+ ++|.|+.. .| +.++|++|++...
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl-~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~ 692 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLI-SAMLGELSHAETSSVVIRGSVAYVPQVSWIFN 692 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCcccCCCEEEecCcEEEEcCcccccc
Confidence 5999999999964 5799999999999999999999999999999 99999743 22 4578888876431
Q ss_pred ----cccc--eeeeeccccccccccc----------------------Cch-HHHHHH--hhhhccCCCEEEEeCcccHH
Q 023563 120 ----YGLD--SIVTHDGVKLPCCALT----------------------TLS-SFRQKF--GSDAYDQVDVIGIDEAQFFE 168 (280)
Q Consensus 120 ----~~~~--~v~~~~~~~~~~~~~~----------------------~l~-~~~~~~--a~aL~~~p~lLlLDEP~~~~ 168 (280)
.++. .-+. +......+... +++ ..++|. |||++.+|+++|||||++..
T Consensus 693 gTIreNI~fg~~~~-~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaL 771 (1495)
T PLN03232 693 ATVRENILFGSDFE-SERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSAL 771 (1495)
T ss_pred ccHHHHhhcCCccC-HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 1111 0000 00000000000 122 122222 78999999999999998876
Q ss_pred H------HHHH-HHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 169 D------LYDF-CREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 169 ~------i~~~-l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
| +++. +.... .|+|+|++||+++.+. .||+|++|++ +++..|+.+++.
T Consensus 772 D~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~l~-----------~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 772 DAHVAHQVFDSCMKDEL--KGKTRVLVTNQLHFLP-----------LMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred CHHHHHHHHHHHhhhhh--cCCEEEEEECChhhHH-----------hCCEEEEEeCCEEEEecCHHHHH
Confidence 5 3332 33332 3899999999999875 7999999999 999999988875
No 355
>PRK04296 thymidine kinase; Provisional
Probab=99.85 E-value=2.3e-20 Score=161.05 Aligned_cols=179 Identities=32% Similarity=0.543 Sum_probs=133.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccCCC
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVD 157 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~ 157 (280)
|.++.+.||+|+||||++++.+..+...|+.+.++.+..+.+.....+..+.+............++...... ...+++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~d 80 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKID 80 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCC
Confidence 7899999999999999996666666667888887765433333333333333321111111222333332211 234789
Q ss_pred EEEEeCcccH--HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeecC-
Q 023563 158 VIGIDEAQFF--EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE- 234 (280)
Q Consensus 158 lLlLDEP~~~--~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~~- 234 (280)
++++||.++. .++.++++.++.. |++||++.++.++..+.|+...+++++||.|..|+..|..||.++.+..|..+
T Consensus 81 vviIDEaq~l~~~~v~~l~~~l~~~-g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~vC~~Cg~~a~~~~r~~~~ 159 (190)
T PRK04296 81 CVLIDEAQFLDKEQVVQLAEVLDDL-GIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKAICVHCGRKATMNQRLIDG 159 (190)
T ss_pred EEEEEccccCCHHHHHHHHHHHHHc-CCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeEEccccCCccceEEEEeCC
Confidence 9999999764 3477877777765 99999999999999999999999999999999999999999999999888773
Q ss_pred -----CCcEEEeCCccceeeeccchhccC
Q 023563 235 -----ETKTELIGGSDIYMPVCRQHYVSG 258 (280)
Q Consensus 235 -----~~~~~~~~~~~~~~~~~~~~~~~~ 258 (280)
+.....+|+.+.|.++||+||...
T Consensus 160 ~~~~~~~~~~~ig~~e~Y~~~Cr~c~~~~ 188 (190)
T PRK04296 160 GPAVYEGPQVLVGGNESYEAVCRKHYKEA 188 (190)
T ss_pred CCccCCCCEEEECCcCcEEehhHHhhhcc
Confidence 345667899999999999999643
No 356
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=1.5e-21 Score=168.88 Aligned_cols=159 Identities=16% Similarity=0.181 Sum_probs=110.9
Q ss_pred cEEEcCceEEeCC-----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCccc
Q 023563 52 MVSPRPPLFSLQN-----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKDT 118 (280)
Q Consensus 52 ~l~~~~ls~~y~~-----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~~ 118 (280)
|+.++|+.+.|.. +.+|+++||+|++|+++.++|.||||||||+ +.++|.. ++|.++.-.+...+.
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTll-n~iaG~l~~t~G~I~Idg~dVtk~~~~~RA 79 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLL-NAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHH-HHhhCccccCCceEEECceecccCCHHHHh
Confidence 5678888888843 6799999999999999999999999999999 9999962 344455443333221
Q ss_pred ccccceeeeeccc-ccccccccC----------------------chHHHHHH---------------------------
Q 023563 119 RYGLDSIVTHDGV-KLPCCALTT----------------------LSSFRQKF--------------------------- 148 (280)
Q Consensus 119 ~~~~~~v~~~~~~-~~~~~~~~~----------------------l~~~~~~~--------------------------- 148 (280)
. .+..++|.... ..+.+.+++ .+.+.++.
T Consensus 80 ~-~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQals 158 (263)
T COG1101 80 N-LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALS 158 (263)
T ss_pred h-HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHH
Confidence 1 12334442110 011111100 00111111
Q ss_pred -hhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563 149 -GSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE 220 (280)
Q Consensus 149 -a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~ 220 (280)
..|.+..|++|+|||=|.. ..++++-.++.++.+.|.+||||+++.|.. |.+|.++|++ +|+
T Consensus 159 L~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~----------yG~RlImLh~G~Iv 228 (263)
T COG1101 159 LLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALD----------YGNRLIMLHSGKIV 228 (263)
T ss_pred HHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHh----------hCCeEEEEeCCeEE
Confidence 2356789999999997554 458888899998889999999999999976 9999999999 887
Q ss_pred cc
Q 023563 221 FC 222 (280)
Q Consensus 221 ~~ 222 (280)
.+
T Consensus 229 lD 230 (263)
T COG1101 229 LD 230 (263)
T ss_pred EE
Confidence 54
No 357
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.85 E-value=1.3e-21 Score=202.91 Aligned_cols=174 Identities=20% Similarity=0.187 Sum_probs=127.6
Q ss_pred ccEEEcCceEEeCCee-eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecC--------Ccccccc
Q 023563 51 SMVSPRPPLFSLQNRN-LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKS--------NKDTRYG 121 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~-vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~--------~~~~~~~ 121 (280)
..+.++|+++.|+.+. +++++|+.|++||+.|++|||||||||++ +++.|.......-.++.. ....+..
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f-~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTF-KMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhH-HHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 3689999999998877 99999999999999999999999999999 999997432221112211 1112334
Q ss_pred cceeeeeccccccc---------------------------ccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563 122 LDSIVTHDGVKLPC---------------------------CALTTLSSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 122 ~~~v~~~~~~~~~~---------------------------~~~~~l~~~~~~~--------------a~aL~~~p~lLl 160 (280)
+++..|.+...... +...++...+++. |.|++.+|++++
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~ 721 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVIL 721 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEE
Confidence 55555543321111 0111222222211 457999999999
Q ss_pred EeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeec
Q 023563 161 IDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKT 233 (280)
Q Consensus 161 LDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~ 233 (280)
||||++ +..+++++.++++. |+.+|++||.+++++. +|||+.+|.+ ++.+.|++.++..+..
T Consensus 722 LDEPstGmDP~arr~lW~ii~~~~k~-g~aiiLTSHsMeE~Ea----------LCtR~aImv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 722 LDEPSTGLDPKARRHLWDIIARLRKN-GKAIILTSHSMEEAEA----------LCTRTAIMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHH----------HhhhhheeecCeeEEecChHHHHhhcC
Confidence 999954 55699999999985 7799999999999997 9999999999 9998999999986665
Q ss_pred CCC
Q 023563 234 EET 236 (280)
Q Consensus 234 ~~~ 236 (280)
...
T Consensus 791 ~gy 793 (885)
T KOG0059|consen 791 SGY 793 (885)
T ss_pred CcE
Confidence 544
No 358
>PLN03140 ABC transporter G family member; Provisional
Probab=99.85 E-value=4.8e-21 Score=206.44 Aligned_cols=163 Identities=15% Similarity=0.129 Sum_probs=112.1
Q ss_pred cEEEcCceEEeC-------------CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC---eeEEEecCC
Q 023563 52 MVSPRPPLFSLQ-------------NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG---RNVAVIKSN 115 (280)
Q Consensus 52 ~l~~~~ls~~y~-------------~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g---~~i~~~~~~ 115 (280)
.+..+||++.++ ++.+|+|||++|++|++++|+||||||||||+ ++|+|....| .++.+-...
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL-~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLM-DVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHH-HHHcCCCCCCcccceEEECCcc
Confidence 589999998863 34799999999999999999999999999999 9999974321 122211111
Q ss_pred c---ccccccceeeeeccccc------------------------------ccccccCchHHHHH---------------
Q 023563 116 K---DTRYGLDSIVTHDGVKL------------------------------PCCALTTLSSFRQK--------------- 147 (280)
Q Consensus 116 ~---~~~~~~~~v~~~~~~~~------------------------------~~~~~~~l~~~~~~--------------- 147 (280)
. ..+..++++.|.+.... ..+...++.+..+.
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 0 01112233333211100 00111122222111
Q ss_pred ----HhhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhH-hhhccCCccccccccceEEEee
Q 023563 148 ----FGSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDY-LRRSFGSVIDIIPLADSVTKLT 216 (280)
Q Consensus 148 ----~a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~-~~~~~~~~~~ll~~aD~i~~L~ 216 (280)
.|++|+.+|++|+|||||+.+ .+++.|++++++ |+|||+++|+++. +.+ +||++++|+
T Consensus 1026 kRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~----------~~D~vllL~ 1094 (1470)
T PLN03140 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFE----------AFDELLLMK 1094 (1470)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHH----------hCCEEEEEc
Confidence 156899999999999997654 588999999876 9999999999983 544 899999998
Q ss_pred c--eeccccCcc
Q 023563 217 A--RCEFCGKRA 226 (280)
Q Consensus 217 ~--~i~~~g~~~ 226 (280)
+ ++++.|++.
T Consensus 1095 ~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1095 RGGQVIYSGPLG 1106 (1470)
T ss_pred CCCEEEEECCcc
Confidence 4 888999864
No 359
>PLN03130 ABC transporter C family member; Provisional
Probab=99.85 E-value=4.1e-21 Score=209.07 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=116.5
Q ss_pred cEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C-C-----eeEEEecCCcccc-
Q 023563 52 MVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K-G-----RNVAVIKSNKDTR- 119 (280)
Q Consensus 52 ~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~-g-----~~i~~~~~~~~~~- 119 (280)
.|+++|++++|+. +++|+|+||+|++|+.++|+||+|||||||+ ++|.|... . | ..++|++|.+...
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl-~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lfn 692 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLI-SAMLGELPPRSDASVVIRGTVAYVPQVSWIFN 692 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHH-HHHHHhhccCCCceEEEcCeEEEEcCccccCC
Confidence 5999999999964 5799999999999999999999999999999 99999743 2 2 3678888876431
Q ss_pred ----cccc--eeeeecccccccccc----------------------cCchH-HHHHH--hhhhccCCCEEEEeCcccHH
Q 023563 120 ----YGLD--SIVTHDGVKLPCCAL----------------------TTLSS-FRQKF--GSDAYDQVDVIGIDEAQFFE 168 (280)
Q Consensus 120 ----~~~~--~v~~~~~~~~~~~~~----------------------~~l~~-~~~~~--a~aL~~~p~lLlLDEP~~~~ 168 (280)
.++. .-+. +......+.. .+++. .+.|. |||++.+|+++|||||++..
T Consensus 693 gTIreNI~fg~~~d-~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSAL 771 (1622)
T PLN03130 693 ATVRDNILFGSPFD-PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771 (1622)
T ss_pred CCHHHHHhCCCccc-HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 1111 0000 0000000000 01221 22222 78999999999999998876
Q ss_pred H------HH-HHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 169 D------LY-DFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 169 ~------i~-~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
| ++ +.+..+. .|+|+|++||+++.+. .||+|++|++ +++..|+.+++.
T Consensus 772 D~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~-----------~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 772 DAHVGRQVFDKCIKDEL--RGKTRVLVTNQLHFLS-----------QVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred CHHHHHHHHHHHhhHHh--cCCEEEEEECCHhHHH-----------hCCEEEEEeCCEEEEeCCHHHHH
Confidence 4 32 2333333 3899999999998876 6999999999 999999988875
No 360
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=99.84 E-value=4.4e-21 Score=163.74 Aligned_cols=183 Identities=36% Similarity=0.547 Sum_probs=157.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC-
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ- 155 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~- 155 (280)
.|.++.+.||++|||||.|++.+-.+.+.|.++..+.+..+.|+..+.+..+.+...++.....-.++.+..+..--..
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~~~~~~~ 82 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAALHEKPP 82 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccccccceeeeccCCcccceecCChHHHHHHHHhcccCCC
Confidence 5789999999999999999888888999999999999999999999999998888777776666666666554322112
Q ss_pred CCEEEEeCcccHH-HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeecC
Q 023563 156 VDVIGIDEAQFFE-DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE 234 (280)
Q Consensus 156 p~lLlLDEP~~~~-~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~~ 234 (280)
-+++++||.+|.. ++...+.+++++.|+.||+.+.|.++-.++|+++..||++||+|.-|+..|..||.++....|..+
T Consensus 83 ~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~GL~~DFrgepFe~s~~Lla~ADkv~kL~aIC~~Cg~~At~~~Rl~~ 162 (201)
T COG1435 83 VDCVLIDEAQFFDEELVYVLNELADRLGIPVICYGLDTDFRGEPFEGSKYLLAIADKVTKLKAICNVCGRKATRTLRLIN 162 (201)
T ss_pred cCEEEEehhHhCCHHHHHHHHHHHhhcCCEEEEeccccccccCCCccHHHHHHHHHHHHHHHHHHHHhCCcceEEEEecC
Confidence 4799999997654 688899999998899999999999999999999999999999999999999999999999988777
Q ss_pred C------CcEEEeCCccceeeeccchhccCc
Q 023563 235 E------TKTELIGGSDIYMPVCRQHYVSGQ 259 (280)
Q Consensus 235 ~------~~~~~~~~~~~~~~~~~~~~~~~~ 259 (280)
. .....+|+.+.|.++||+||....
T Consensus 163 ~~~a~~~~~~i~IGg~e~Y~a~CR~h~~~~~ 193 (201)
T COG1435 163 GGPAVYEGPQILIGGNESYEARCRKHHKEPG 193 (201)
T ss_pred CCCCccCCCeEEECCCcceeehhhhhhhccc
Confidence 4 346778999999999999996543
No 361
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.84 E-value=6e-21 Score=207.30 Aligned_cols=166 Identities=17% Similarity=0.205 Sum_probs=116.7
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C-----CeeEEEecCCccccc-c
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K-----GRNVAVIKSNKDTRY-G 121 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~-----g~~i~~~~~~~~~~~-~ 121 (280)
.|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+ ++|.|+.. . +..++|++|++.... .
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl-~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~T 714 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLL-SALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDS 714 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCccCCcEEEECCEEEEEcCCccccCCc
Confidence 6999999999974 5799999999999999999999999999999 99999732 1 236788888754311 1
Q ss_pred ccee--eee---ccccccccc----------------------ccCch-HHHHHH--hhhhccCCCEEEEeCcccHHH--
Q 023563 122 LDSI--VTH---DGVKLPCCA----------------------LTTLS-SFRQKF--GSDAYDQVDVIGIDEAQFFED-- 169 (280)
Q Consensus 122 ~~~v--~~~---~~~~~~~~~----------------------~~~l~-~~~~~~--a~aL~~~p~lLlLDEP~~~~~-- 169 (280)
+... +.. ......... -.+++ ..++|. |||++.+|+++|||||++..|
T Consensus 715 i~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~ 794 (1522)
T TIGR00957 715 LRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 794 (1522)
T ss_pred HHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 1000 000 000000000 00121 112222 789999999999999987654
Q ss_pred ----HHHHHHHHHh-hcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 170 ----LYDFCREAAD-HDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 170 ----i~~~l~~l~~-~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+++.+.+... ..|+|+|++||+++.+. .||+|++|++ +++..|+++++.
T Consensus 795 ~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~-----------~~D~ii~l~~G~i~~~g~~~~l~ 849 (1522)
T TIGR00957 795 VGKHIFEHVIGPEGVLKNKTRILVTHGISYLP-----------QVDVIIVMSGGKISEMGSYQELL 849 (1522)
T ss_pred HHHHHHHHHhhhhhhhcCCEEEEEeCChhhhh-----------hCCEEEEecCCeEEeeCCHHHHH
Confidence 5555543211 13899999999999886 6999999999 999999988775
No 362
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.83 E-value=2.6e-21 Score=180.04 Aligned_cols=73 Identities=10% Similarity=0.037 Sum_probs=64.1
Q ss_pred hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563 149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF 221 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~ 221 (280)
|++|+.+|++||||||++.+ .+++.|+++.++.|+|+|++|||++++.+ +||+|++|++ +++.
T Consensus 112 araL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~----------~~d~i~vl~~G~i~~ 181 (325)
T TIGR01187 112 ARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMT----------MSDRIAIMRKGKIAQ 181 (325)
T ss_pred HHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEE
Confidence 67899999999999996654 58888888887669999999999999876 9999999999 9999
Q ss_pred ccCcceeeee
Q 023563 222 CGKRAFFTLR 231 (280)
Q Consensus 222 ~g~~~~~~~~ 231 (280)
.|+++++..+
T Consensus 182 ~g~~~~~~~~ 191 (325)
T TIGR01187 182 IGTPEEIYEE 191 (325)
T ss_pred EcCHHHHHhC
Confidence 9999888643
No 363
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.6e-21 Score=184.40 Aligned_cols=167 Identities=16% Similarity=0.186 Sum_probs=113.2
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC---------eeEEEecCCccccccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG---------RNVAVIKSNKDTRYGL 122 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g---------~~i~~~~~~~~~~~~~ 122 (280)
=|.+.+.+..||++.+|++-++++..|..|||+|+||+|||||| |+|+.-.+.+ ..+....+........
T Consensus 80 Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLL-Raia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~ 158 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLL-RAIANGQVSGFHVEQEVRGDDTEALQSVLESDTER 158 (582)
T ss_pred ceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHH-HHHHhcCcCccCchhheeccchHHHhhhhhccHHH
Confidence 38899999999999999999999999999999999999999999 9887632211 1111111100000000
Q ss_pred ceeeeeccc-------------------------ccccccccCchHHHHHHhhhhccCCCEEEEeCcccHHHHH--HHHH
Q 023563 123 DSIVTHDGV-------------------------KLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLY--DFCR 175 (280)
Q Consensus 123 ~~v~~~~~~-------------------------~~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~--~~l~ 175 (280)
..++.++.. ..+.-.+.+=+.++-..||||..+||+|||||||+.+|+. ..|.
T Consensus 159 ~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe 238 (582)
T KOG0062|consen 159 LDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLE 238 (582)
T ss_pred HHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHH
Confidence 011111100 0000011122233333378999999999999999999974 4566
Q ss_pred HHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee-ccccCcceee
Q 023563 176 EAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC-EFCGKRAFFT 229 (280)
Q Consensus 176 ~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i-~~~g~~~~~~ 229 (280)
......+.|+|+||||-.+... +|..|+.+++ ++ .+.|+.+++.
T Consensus 239 ~yL~t~~~T~liVSHDr~FLn~----------V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 239 NYLQTWKITSLIVSHDRNFLNT----------VCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred HHHhhCCceEEEEeccHHHHHH----------HHHHHHHHhhhhhhhhcCcHHHHH
Confidence 6666668999999999999997 9999999998 54 3457666654
No 364
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.82 E-value=3.1e-20 Score=201.41 Aligned_cols=161 Identities=17% Similarity=0.153 Sum_probs=109.3
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C-----CeeEEEecCCccccc-ccce
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K-----GRNVAVIKSNKDTRY-GLDS 124 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~-----g~~i~~~~~~~~~~~-~~~~ 124 (280)
++++|+++. .+.+|+|+||+|++|++++|+||||||||||+ ++|.|+.. . ...++|++|.+.... .+..
T Consensus 429 ~~~~~~s~~--~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl-~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~e 505 (1490)
T TIGR01271 429 LFFSNFSLY--VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLL-MMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKD 505 (1490)
T ss_pred ccccccccc--cCcceeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHH
Confidence 455555543 35689999999999999999999999999999 99999732 1 225788888754311 1100
Q ss_pred e--ee--ecc-cccccccc----------------------cCch-HHHHHH--hhhhccCCCEEEEeCcccHHH-----
Q 023563 125 I--VT--HDG-VKLPCCAL----------------------TTLS-SFRQKF--GSDAYDQVDVIGIDEAQFFED----- 169 (280)
Q Consensus 125 v--~~--~~~-~~~~~~~~----------------------~~l~-~~~~~~--a~aL~~~p~lLlLDEP~~~~~----- 169 (280)
. +. ... .....+.. .+++ ....|. |||++.+|+++|||||+++.|
T Consensus 506 NI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~ 585 (1490)
T TIGR01271 506 NIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEK 585 (1490)
T ss_pred HHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 0 00 000 00000000 0111 111222 789999999999999977654
Q ss_pred -HHHH-HHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 170 -LYDF-CREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 170 -i~~~-l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+++. +.++. + |+|+|++||+++.+. .||+|++|++ +++..|+++++.
T Consensus 586 ~i~~~~l~~~~-~-~~tvilvtH~~~~~~-----------~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 586 EIFESCLCKLM-S-NKTRILVTSKLEHLK-----------KADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHh-c-CCeEEEEeCChHHHH-----------hCCEEEEEECCEEEEEcCHHHHH
Confidence 5543 45554 3 899999999999885 6999999999 999999987775
No 365
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.82 E-value=3.4e-20 Score=199.79 Aligned_cols=154 Identities=17% Similarity=0.043 Sum_probs=105.9
Q ss_pred CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-----hCCeeEEEecCCc-----ccccccceeeeeccccc
Q 023563 64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-----QKGRNVAVIKSNK-----DTRYGLDSIVTHDGVKL 133 (280)
Q Consensus 64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-----~~g~~i~~~~~~~-----~~~~~~~~v~~~~~~~~ 133 (280)
.+.+|+|+|+++++||+++|+||||||||||+ ++|+|.. .....|.+-.... ..+..+.++.|.+....
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLL-k~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLL-KTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHH-HHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 46799999999999999999999999999999 9999963 1222332221110 01111233333211000
Q ss_pred -----------------------------------ccccccCchHHHHH-------------------HhhhhccCCCEE
Q 023563 134 -----------------------------------PCCALTTLSSFRQK-------------------FGSDAYDQVDVI 159 (280)
Q Consensus 134 -----------------------------------~~~~~~~l~~~~~~-------------------~a~aL~~~p~lL 159 (280)
..+...++.+.++. .|++|+.+|++|
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 00111122221111 156899999999
Q ss_pred EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEech-hHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDG-DYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl-~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
+|||||+.+ ++++.|++++++.|+|+|+++|+. +++.+ ++|+|++|++ ++++.|+++++
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~----------l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYE----------LFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHH----------hhceEEEEeCCeEEEECCHHHH
Confidence 999997654 588999999876699999999996 56655 8999999999 99999998766
No 366
>PLN03140 ABC transporter G family member; Provisional
Probab=99.81 E-value=4.2e-20 Score=199.24 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=60.8
Q ss_pred hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEech-hHhhhccCCccccccccceEEEeec-eec
Q 023563 149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDG-DYLRRSFGSVIDIIPLADSVTKLTA-RCE 220 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl-~~~~~~~~~~~~ll~~aD~i~~L~~-~i~ 220 (280)
|++|+.+|++|+||||++.+ ++++.|++++++.|+|+|+++|+. +++.+ ++|+|++|++ +++
T Consensus 348 a~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~----------lfD~vilL~~G~iv 417 (1470)
T PLN03140 348 GEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFD----------LFDDIILLSEGQIV 417 (1470)
T ss_pred hhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHH----------HhheEEEeeCceEE
Confidence 55799999999999997655 488999999876699999999986 46654 9999999999 999
Q ss_pred cccCcceee
Q 023563 221 FCGKRAFFT 229 (280)
Q Consensus 221 ~~g~~~~~~ 229 (280)
+.|+++++.
T Consensus 418 y~G~~~~~~ 426 (1470)
T PLN03140 418 YQGPRDHIL 426 (1470)
T ss_pred EeCCHHHHH
Confidence 999987764
No 367
>PTZ00243 ABC transporter; Provisional
Probab=99.81 E-value=5.6e-20 Score=199.81 Aligned_cols=156 Identities=24% Similarity=0.301 Sum_probs=106.1
Q ss_pred EEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--C-----CeeEEEecCCccccc-cccee--eeec
Q 023563 60 FSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--K-----GRNVAVIKSNKDTRY-GLDSI--VTHD 129 (280)
Q Consensus 60 ~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~-----g~~i~~~~~~~~~~~-~~~~v--~~~~ 129 (280)
+.++++.+|+|+||+|++|++++|+||||||||||+ ++|.|+.. . .+.++|++|.+.... .+... +...
T Consensus 668 ~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL-~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~ 746 (1560)
T PTZ00243 668 FELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLL-QSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDE 746 (1560)
T ss_pred cccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCCh
Confidence 444667899999999999999999999999999999 99999732 1 246788888754311 01000 0000
Q ss_pred -c--ccccccccc----------------------Cch-HHHHHH--hhhhccCCCEEEEeCcccHHH------HHHH-H
Q 023563 130 -G--VKLPCCALT----------------------TLS-SFRQKF--GSDAYDQVDVIGIDEAQFFED------LYDF-C 174 (280)
Q Consensus 130 -~--~~~~~~~~~----------------------~l~-~~~~~~--a~aL~~~p~lLlLDEP~~~~~------i~~~-l 174 (280)
. .....+... +++ ....+. |||++.+|+++|||||++..| +++. +
T Consensus 747 ~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~ 826 (1560)
T PTZ00243 747 EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF 826 (1560)
T ss_pred hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 0 000000000 111 111111 689999999999999987664 3332 2
Q ss_pred HHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 175 REAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 175 ~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
... . .|+|+|++||+++.+. .||+|++|++ ++++.|+++++.
T Consensus 827 ~~~-~-~~~TvIlvTH~~~~~~-----------~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 827 LGA-L-AGKTRVLATHQVHVVP-----------RADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred HHh-h-CCCEEEEEeCCHHHHH-----------hCCEEEEEECCEEEEecCHHHHH
Confidence 222 2 3899999999999885 7999999999 999999988875
No 368
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=1e-19 Score=182.00 Aligned_cols=166 Identities=20% Similarity=0.240 Sum_probs=114.0
Q ss_pred cEEEcCceEEeC-----CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC----eeEEEecCCcc---cc
Q 023563 52 MVSPRPPLFSLQ-----NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG----RNVAVIKSNKD---TR 119 (280)
Q Consensus 52 ~l~~~~ls~~y~-----~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g----~~i~~~~~~~~---~~ 119 (280)
-+.+++++.... .+.+|+|||.++++||+.||+||+|||||||+ .+++|-...| ..+.+-..... .+
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL-~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLL-NALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHH-HHHhccccCCCcceEEEEECCccCchhhhh
Confidence 367777776663 36799999999999999999999999999999 9999864322 12221110110 11
Q ss_pred cccceeeeeccccccccc-------------------------------ccCchHHH-----------------HH--Hh
Q 023563 120 YGLDSIVTHDGVKLPCCA-------------------------------LTTLSSFR-----------------QK--FG 149 (280)
Q Consensus 120 ~~~~~v~~~~~~~~~~~~-------------------------------~~~l~~~~-----------------~~--~a 149 (280)
...+++.| +....+.++ ..++.+.+ +| .|
T Consensus 104 ~~s~yV~Q-dD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia 182 (613)
T KOG0061|consen 104 KISGYVQQ-DDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIA 182 (613)
T ss_pred heeEEEcc-cccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHH
Confidence 11223322 221111110 00111111 11 14
Q ss_pred hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
.+++.+|.+|++||||+.+ ++++.|++++++ |+|||++-|.+.. +++.+-|++++|.. ++++.
T Consensus 183 ~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss---------~lf~lFD~l~lLs~G~~vy~ 252 (613)
T KOG0061|consen 183 LELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSS---------ELFELFDKLLLLSEGEVVYS 252 (613)
T ss_pred HHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcH---------HHHHHHhHhhhhcCCcEEEe
Confidence 5799999999999998765 489999999998 9999999999873 34568999999999 99999
Q ss_pred cCcceee
Q 023563 223 GKRAFFT 229 (280)
Q Consensus 223 g~~~~~~ 229 (280)
|+++++.
T Consensus 253 G~~~~~~ 259 (613)
T KOG0061|consen 253 GSPRELL 259 (613)
T ss_pred cCHHHHH
Confidence 9988664
No 369
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.79 E-value=2e-19 Score=172.47 Aligned_cols=167 Identities=16% Similarity=0.238 Sum_probs=112.7
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---CeeEEEecCCccc--ccccceee
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---GRNVAVIKSNKDT--RYGLDSIV 126 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---g~~i~~~~~~~~~--~~~~~~v~ 126 (280)
-++++|+++.|.++.+++|+.|++.+|+.|||+|||||||||+| ++|.|-... .-++..+.+.... ...+..++
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L-~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~ 153 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFL-RAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVV 153 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHH-HHHhcCCCCCCcccchhhhcccCCCchHHHHHHHh
Confidence 48999999999999999999999999999999999999999999 999884221 1111111111100 00011111
Q ss_pred e------------------e-cccc-------ccccc-------------------------------ccCchHHHHHHh
Q 023563 127 T------------------H-DGVK-------LPCCA-------------------------------LTTLSSFRQKFG 149 (280)
Q Consensus 127 ~------------------~-~~~~-------~~~~~-------------------------------~~~l~~~~~~~a 149 (280)
. . +... ...+. +.+=+..+-..|
T Consensus 154 ~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLA 233 (614)
T KOG0927|consen 154 METDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALA 233 (614)
T ss_pred hhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHH
Confidence 0 0 0000 00000 000111111226
Q ss_pred hhhccCCCEEEEeCcccHHHH--HHHHHHHHhhcCC-EEEEEEechhHhhhccCCccccccccceEEEeec-e-eccccC
Q 023563 150 SDAYDQVDVIGIDEAQFFEDL--YDFCREAADHDGK-TVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-R-CEFCGK 224 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~~~~i--~~~l~~l~~~~g~-tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~-i~~~g~ 224 (280)
++|..+|++|||||||+.+|+ ...|.+...+... ++|+++|+-+++.. +|.+|+.|.. + +.+.|+
T Consensus 234 r~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~----------vCT~Ii~l~~kkl~~y~Gn 303 (614)
T KOG0927|consen 234 RALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNG----------VCTNIIHLDNKKLIYYEGN 303 (614)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhh----------HhhhhheecccceeeecCC
Confidence 789999999999999999874 4566666655566 89999999999997 9999999998 5 677788
Q ss_pred cceee
Q 023563 225 RAFFT 229 (280)
Q Consensus 225 ~~~~~ 229 (280)
.+...
T Consensus 304 ydqy~ 308 (614)
T KOG0927|consen 304 YDQYV 308 (614)
T ss_pred HHHHh
Confidence 76654
No 370
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.78 E-value=1e-18 Score=153.07 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=90.7
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEee-CceEEEEEcCCCCcHHHHHHHHHhcchh---CC-eeE----EEecCCccccccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSP-SGEIHVIVGPMFAGKTTTLLRRIQAETQ---KG-RNV----AVIKSNKDTRYGL 122 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~-~Gei~~liGpNGsGKSTLl~~~l~gl~~---~g-~~i----~~~~~~~~~~~~~ 122 (280)
.|+++|.. +|.+. .+|+|+.. +|++++|+||||||||||+ ++|.+..+ .+ ... ..+... .....+
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll-~~i~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTIL-DAITYALYGKTPRYGRQENLRSVFAPG-EDTAEV 78 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHH-HHheeeEecCccccccchhHHHHhcCC-CccEEE
Confidence 47889988 76554 45667654 5899999999999999999 88885321 00 000 000000 001111
Q ss_pred ceeeeeccccc--------c--------cccccCchHHHHH--------------Hhhhhcc----------CCCEEEEe
Q 023563 123 DSIVTHDGVKL--------P--------CCALTTLSSFRQK--------------FGSDAYD----------QVDVIGID 162 (280)
Q Consensus 123 ~~v~~~~~~~~--------~--------~~~~~~l~~~~~~--------------~a~aL~~----------~p~lLlLD 162 (280)
...++...... . .+...++..+.++ .+++++. +|++||||
T Consensus 79 ~~~f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllD 158 (213)
T cd03279 79 SFTFQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFID 158 (213)
T ss_pred EEEEEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEe
Confidence 22222111100 0 0000111122111 1556763 67999999
Q ss_pred CcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 163 EAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 163 EP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
||++.. .+.+.+.+++++ |.|+|++||+++++.+ +||+++++++
T Consensus 159 Ep~~~lD~~~~~~~~~~l~~~~~~-~~tii~itH~~~~~~~----------~~~~i~~~~~ 208 (213)
T cd03279 159 EGFGTLDPEALEAVATALELIRTE-NRMVGVISHVEELKER----------IPQRLEVIKT 208 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEECchHHHHh----------hCcEEEEEec
Confidence 996543 477888888765 9999999999999986 8999999987
No 371
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.78 E-value=8.2e-19 Score=151.65 Aligned_cols=170 Identities=12% Similarity=0.151 Sum_probs=116.5
Q ss_pred ccEEEcCceEEe----CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEE------------EecC
Q 023563 51 SMVSPRPPLFSL----QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVA------------VIKS 114 (280)
Q Consensus 51 ~~l~~~~ls~~y----~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~------------~~~~ 114 (280)
|++.++|++..+ |...+++++|+++.+||+-||+|.+|||||-.. +.|.|...++-.++ .+.+
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiA-K~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIA-KAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHH-HHHhcccccceEEEhhhcccccchhhcCCh
Confidence 478899999888 346799999999999999999999999999998 99999732221111 1111
Q ss_pred Cccc---ccccceeeeecccc--------------ccccc---------------------ccCchH---HHHHH-----
Q 023563 115 NKDT---RYGLDSIVTHDGVK--------------LPCCA---------------------LTTLSS---FRQKF----- 148 (280)
Q Consensus 115 ~~~~---~~~~~~v~~~~~~~--------------~~~~~---------------------~~~l~~---~~~~~----- 148 (280)
..+. ...+..+||..... .+.+. .+++.+ +...+
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 1100 00112222211000 00111 111111 11111
Q ss_pred ---------hhhhccCCCEEEEeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEE
Q 023563 149 ---------GSDAYDQVDVIGIDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVT 213 (280)
Q Consensus 149 ---------a~aL~~~p~lLlLDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~ 213 (280)
|.|++.+|++||.||||+ +.+++.+|.++.+..|.||++++||+..+.+ +||+|-
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~----------W~d~i~ 230 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQ----------WADKIN 230 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHH----------HhhheE
Confidence 457899999999999954 5578999999998789999999999999997 999999
Q ss_pred Eeec-eeccccCcceeeee
Q 023563 214 KLTA-RCEFCGKRAFFTLR 231 (280)
Q Consensus 214 ~L~~-~i~~~g~~~~~~~~ 231 (280)
+|.- .-+..++.+++...
T Consensus 231 VlYCGQ~~ESa~~e~l~~~ 249 (330)
T COG4170 231 VLYCGQTVESAPSEELVTM 249 (330)
T ss_pred EEEecccccccchhHHhcC
Confidence 9987 66777777777644
No 372
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.78 E-value=1.1e-19 Score=153.06 Aligned_cols=173 Identities=20% Similarity=0.144 Sum_probs=114.9
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccc-------ccc---
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDT-------RYG--- 121 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~-------~~~--- 121 (280)
+++++||... +-|-.+|.++..||++-+|||||||||||+ ..++|+......|-+-...... |..
T Consensus 3 l~qln~v~~~----tRL~plS~qv~aGe~~HliGPNGaGKSTLL-A~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYL 77 (248)
T COG4138 3 LMQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLL-ARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYL 77 (248)
T ss_pred eeeecccccc----ccccccccccccceEEEEECCCCccHHHHH-HHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHH
Confidence 6788887653 235678999999999999999999999999 8899986654444433222110 000
Q ss_pred --------cceeeeeccccccc----------ccccCchHHHHHH-----hh----------------hhccCCCEEEEe
Q 023563 122 --------LDSIVTHDGVKLPC----------CALTTLSSFRQKF-----GS----------------DAYDQVDVIGID 162 (280)
Q Consensus 122 --------~~~v~~~~~~~~~~----------~~~~~l~~~~~~~-----a~----------------aL~~~p~lLlLD 162 (280)
..-++++-.+..+. ....++.+.+.+. |. .+-...++||+|
T Consensus 78 sQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllD 157 (248)
T COG4138 78 SQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD 157 (248)
T ss_pred hhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEec
Confidence 00111111111111 0111222222221 10 122356799999
Q ss_pred CcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeeeecCC
Q 023563 163 EAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLRKTEE 235 (280)
Q Consensus 163 EP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~~~~~ 235 (280)
||.+.+| +..+|.+++.. |.+|||++||++.-.+ .||++++|+. +++.+|..++++ +.+
T Consensus 158 EP~~~LDvAQ~~aLdrll~~~c~~-G~~vims~HDLNhTLr----------hA~~~wLL~rG~l~~~G~~~eVl---t~~ 223 (248)
T COG4138 158 EPMNSLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNHTLR----------HAHRAWLLKRGKLLASGRREEVL---TPP 223 (248)
T ss_pred CCCcchhHHHHHHHHHHHHHHHhC-CcEEEEeccchhhHHH----------HHHHHHHHhcCeEEeecchhhhc---ChH
Confidence 9976654 45677888886 9999999999998866 9999999999 999999999999 777
Q ss_pred CcEEEeCC
Q 023563 236 TKTELIGG 243 (280)
Q Consensus 236 ~~~~~~~~ 243 (280)
.+...||.
T Consensus 224 vL~q~fg~ 231 (248)
T COG4138 224 VLAQAYGM 231 (248)
T ss_pred HHHHHhcc
Confidence 66666664
No 373
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.78 E-value=5.1e-19 Score=186.65 Aligned_cols=164 Identities=18% Similarity=0.119 Sum_probs=115.3
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc--------hhCCee------------E
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE--------TQKGRN------------V 109 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl--------~~~g~~------------i 109 (280)
-|+++|++.+|.. ..||+||||+|++||.+||+|..|||||||+ ..+-.+ .++|.+ +
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~-~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLI-LALFRLVEPAEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHH-HHHHHhcCccCCeEEEcCeecccccHHHHHhcC
Confidence 5999999999965 4799999999999999999999999999999 666554 234443 3
Q ss_pred EEecCCccc-----ccccceeeee-cccccccccccCchHHH-------------------------HHHhhhhccCCCE
Q 023563 110 AVIKSNKDT-----RYGLDSIVTH-DGVKLPCCALTTLSSFR-------------------------QKFGSDAYDQVDV 158 (280)
Q Consensus 110 ~~~~~~~~~-----~~~~~~v~~~-~~~~~~~~~~~~l~~~~-------------------------~~~a~aL~~~p~l 158 (280)
+.+||++-. |+++.-.-++ +.....+++...+.+.- -..||||+.+.+|
T Consensus 1217 sIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skI 1296 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKI 1296 (1381)
T ss_pred eeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCE
Confidence 455555422 2221111110 00011111111111111 1118899999999
Q ss_pred EEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|+|||+|+.-| +.+.|++.-+ ++|||.+.|.++.+. -||||+||++ ++++.|+|.+++
T Consensus 1297 LvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~TVm-----------d~DrVlVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1297 LVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLNTVM-----------DSDRVLVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred EEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccchhh-----------hcCeEEEeeCCeEeecCChHHHH
Confidence 99999987643 4555555554 899999999999987 4999999999 999999999998
No 374
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.77 E-value=1.5e-18 Score=150.55 Aligned_cols=134 Identities=16% Similarity=0.146 Sum_probs=82.2
Q ss_pred EeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-------Ce---eEEEecCCc---ccccccceeeeecccccc-
Q 023563 69 SEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-------GR---NVAVIKSNK---DTRYGLDSIVTHDGVKLP- 134 (280)
Q Consensus 69 ~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-------g~---~i~~~~~~~---~~~~~~~~v~~~~~~~~~- 134 (280)
++++|++++| +++|+||||||||||+ ++|.|+... +. ++.+..+.. .....++.++|.....+.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll-~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~ 91 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNII-DAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI 91 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHH-HHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE
Confidence 5688999999 9999999999999999 888876311 11 111111110 011223344443222110
Q ss_pred --------cccccC--------ch-HHHHHH--hhhhc----cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEE
Q 023563 135 --------CCALTT--------LS-SFRQKF--GSDAY----DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTV 185 (280)
Q Consensus 135 --------~~~~~~--------l~-~~~~~~--a~aL~----~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tv 185 (280)
.+...+ ++ ....+. +++++ .+|+++|||||++.. .+++.|+++++ +.||
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~ti 169 (197)
T cd03278 92 ISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQF 169 (197)
T ss_pred EehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCEE
Confidence 000000 00 001111 44554 467999999996543 47778888754 6899
Q ss_pred EEEEechhHhhhccCCccccccccceEEEeec
Q 023563 186 IVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 186 iivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
|++||+++++. +||+++.+..
T Consensus 170 IiitH~~~~~~-----------~~d~v~~~~~ 190 (197)
T cd03278 170 IVITHRKGTME-----------AADRLYGVTM 190 (197)
T ss_pred EEEECCHHHHh-----------hcceEEEEEe
Confidence 99999999864 8999999876
No 375
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.77 E-value=1.9e-19 Score=172.67 Aligned_cols=155 Identities=18% Similarity=0.191 Sum_probs=107.2
Q ss_pred CccEEEcCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---------CeeEEEecCCcccc
Q 023563 50 HSMVSPRPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---------GRNVAVIKSNKDTR 119 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---------g~~i~~~~~~~~~~ 119 (280)
.|++.++|++|+|.+. .++++++|-|..++.+++|||||+|||||| +++.|.... +..+.++.|+....
T Consensus 387 ~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLl-Kl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ 465 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLL-KLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQ 465 (614)
T ss_pred CCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhH-HHHhhccccccccccccccccchhhhhhhHhh
Confidence 4689999999999765 689999999999999999999999999999 999886321 11222333332211
Q ss_pred cccceeeeeccccccc----ccccCchHHHHHH------------------------hhhhccCCCEEEEeCcccHHHH-
Q 023563 120 YGLDSIVTHDGVKLPC----CALTTLSSFRQKF------------------------GSDAYDQVDVIGIDEAQFFEDL- 170 (280)
Q Consensus 120 ~~~~~v~~~~~~~~~~----~~~~~l~~~~~~~------------------------a~aL~~~p~lLlLDEP~~~~~i- 170 (280)
........ ....+. .....+..+..++ ++.++.+|.+|||||||+..|+
T Consensus 466 ldl~~s~l--e~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~ 543 (614)
T KOG0927|consen 466 LDLDKSSL--EFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIE 543 (614)
T ss_pred cCcchhHH--HHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCch
Confidence 11100000 000000 0011111111222 5567899999999999999874
Q ss_pred -HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 171 -YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 171 -~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
++.+.+..++...+||++|||.-++.+ ++++|.+..+
T Consensus 544 tid~laeaiNe~~Ggvv~vSHDfrlI~q----------VaeEi~~c~~ 581 (614)
T KOG0927|consen 544 TIDALAEAINEFPGGVVLVSHDFRLISQ----------VAEEIWVCEN 581 (614)
T ss_pred hHHHHHHHHhccCCceeeeechhhHHHH----------HHHHhHhhcc
Confidence 667777777777899999999999998 9999999888
No 376
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.8e-18 Score=143.90 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=104.1
Q ss_pred cEEEcCceEEe-----CC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc-chhCCeeEEEecCCc-------
Q 023563 52 MVSPRPPLFSL-----QN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA-ETQKGRNVAVIKSNK------- 116 (280)
Q Consensus 52 ~l~~~~ls~~y-----~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g-l~~~g~~i~~~~~~~------- 116 (280)
.|.++|++|+| ++ -++++++||+|+.||+++|-||||||||||+ +++.+ +..+...|-.-.+..
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStll-r~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLL-RSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHH-HHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 58999999999 33 4699999999999999999999999999999 88776 444444443222211
Q ss_pred --c-----cccccceeeeecccc----------ccc-----------------ccccCch----HH-----------HHH
Q 023563 117 --D-----TRYGLDSIVTHDGVK----------LPC-----------------CALTTLS----SF-----------RQK 147 (280)
Q Consensus 117 --~-----~~~~~~~v~~~~~~~----------~~~-----------------~~~~~l~----~~-----------~~~ 147 (280)
. .+..++++.|.-... .+. +...++- .+ +--
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN 162 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN 162 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence 1 022344443311100 000 0011110 00 000
Q ss_pred HhhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 148 FGSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 148 ~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
.+|.++.+-++|||||||.. .-+.++|.+.... |.++|=+-||-+.-.. +|||++.+..
T Consensus 163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~-GaAlvGIFHDeevre~----------vadR~~~~~~ 227 (235)
T COG4778 163 IARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKAR-GAALVGIFHDEEVREA----------VADRLLDVSA 227 (235)
T ss_pred hhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhc-CceEEEeeccHHHHHH----------Hhhheeeccc
Confidence 15679999999999999654 4488999888775 9999999999887665 9999998865
No 377
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.3e-18 Score=161.19 Aligned_cols=164 Identities=20% Similarity=0.161 Sum_probs=116.0
Q ss_pred cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCcc------cccccc
Q 023563 52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKD------TRYGLD 123 (280)
Q Consensus 52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~------~~~~~~ 123 (280)
.+.+++|++.|+ .+++|+++||+++.|+.++++||+|+||||++ +++-.+. .+...|....|+.+ .|..++
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~-rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg 340 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTIL-RLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHH-HHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhC
Confidence 478999999995 57899999999999999999999999999999 8887652 22333333333221 122223
Q ss_pred eeeeeccccc-----------cc----------------------------------ccccCchHHHHHHhhhhccCCCE
Q 023563 124 SIVTHDGVKL-----------PC----------------------------------CALTTLSSFRQKFGSDAYDQVDV 158 (280)
Q Consensus 124 ~v~~~~~~~~-----------~~----------------------------------~~~~~l~~~~~~~a~aL~~~p~l 158 (280)
.+.|.-.+.. +. +.+.+=+..+-..||+++.+|++
T Consensus 341 ~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~i 420 (497)
T COG5265 341 IVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPI 420 (497)
T ss_pred cCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCE
Confidence 2332100000 00 00111111112226789999999
Q ss_pred EEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|++||.|+++| +...|++..+ |+|-+++.|.+..+. -||+|++|++ ++++.|+.++++
T Consensus 421 l~~deatsaldt~te~~iq~~l~~~~~--~rttlviahrlsti~-----------~adeiivl~~g~i~erg~h~~ll 485 (497)
T COG5265 421 LILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLSTII-----------DADEIIVLDNGRIVERGTHEELL 485 (497)
T ss_pred EEEehhhhHhhhhHHHHHHHHHHHHhC--CCeEEEEeehhhhcc-----------CCceEEEeeCCEEEecCcHHHHH
Confidence 99999988875 6666777664 999999999999886 5999999999 999999999987
No 378
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.7e-18 Score=146.99 Aligned_cols=142 Identities=20% Similarity=0.175 Sum_probs=91.8
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCccc-cc---------
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKDT-RY--------- 120 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~~-~~--------- 120 (280)
+++.+|++...+++.++.++||++.+||++-|.||||||||||+ |+|+|+. .....|.+-...... +.
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLL-RilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yL 80 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLL-RILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYL 80 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHH-HHHHcccCCCCCeEEecCCCCccchhhHHHHHHHh
Confidence 68899999999999999999999999999999999999999999 9999983 333344332111110 00
Q ss_pred ----ccce---eee----------e--cccccccccccCchHH------------HHHH--hhhhccCCCEEEEeCcccH
Q 023563 121 ----GLDS---IVT----------H--DGVKLPCCALTTLSSF------------RQKF--GSDAYDQVDVIGIDEAQFF 167 (280)
Q Consensus 121 ----~~~~---v~~----------~--~~~~~~~~~~~~l~~~------------~~~~--a~aL~~~p~lLlLDEP~~~ 167 (280)
++.. +++ . ......++..+++..+ .++. ||-++..+++.|||||++.
T Consensus 81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ta 160 (209)
T COG4133 81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTA 160 (209)
T ss_pred hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccc
Confidence 0000 000 0 0001112222222211 1122 3446789999999999765
Q ss_pred HH------HHHHHHHHHhhcCCEEEEEEechhHh
Q 023563 168 ED------LYDFCREAADHDGKTVIVAGLDGDYL 195 (280)
Q Consensus 168 ~~------i~~~l~~l~~~~g~tviivtHdl~~~ 195 (280)
.| +-.++...+++ |-.||.+||..--+
T Consensus 161 LDk~g~a~l~~l~~~H~~~-GGiVllttHq~l~~ 193 (209)
T COG4133 161 LDKEGVALLTALMAAHAAQ-GGIVLLTTHQPLPI 193 (209)
T ss_pred cCHHHHHHHHHHHHHHhcC-CCEEEEecCCccCC
Confidence 43 45566666665 88999999986543
No 379
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.76 E-value=3.6e-18 Score=154.29 Aligned_cols=65 Identities=20% Similarity=0.234 Sum_probs=54.2
Q ss_pred hhhhccC---CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe----
Q 023563 149 GSDAYDQ---VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL---- 215 (280)
Q Consensus 149 a~aL~~~---p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L---- 215 (280)
+++|+.+ |+++|||||++.+ .+++.|+++.++ |.|||++|||++++. .||+++.|
T Consensus 181 AraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvIiitH~~~~i~-----------~aD~ii~Lgp~~ 248 (261)
T cd03271 181 AKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDVIK-----------CADWIIDLGPEG 248 (261)
T ss_pred HHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-----------hCCEEEEecCCc
Confidence 5578875 7999999997654 478888888765 999999999999885 79999999
Q ss_pred --ec-eeccccCc
Q 023563 216 --TA-RCEFCGKR 225 (280)
Q Consensus 216 --~~-~i~~~g~~ 225 (280)
++ ++++.|++
T Consensus 249 g~~~G~iv~~Gt~ 261 (261)
T cd03271 249 GDGGGQVVASGTP 261 (261)
T ss_pred CCCCCEEEEeCCC
Confidence 66 88888764
No 380
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.73 E-value=9.1e-18 Score=147.35 Aligned_cols=145 Identities=12% Similarity=0.076 Sum_probs=86.8
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHh---cch---hCCeeEEEecCCccccc-----c
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ---AET---QKGRNVAVIKSNKDTRY-----G 121 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~---gl~---~~g~~i~~~~~~~~~~~-----~ 121 (280)
|+++|.- +|+++.+++++++ ++++|+|||||||||++ ++|. |.. .....++++.+...... .
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll-~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 78 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVI-DSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCS 78 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHH-HHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCceEE
Confidence 6777765 8999999999988 79999999999999999 7765 221 11112222222211100 0
Q ss_pred cceeeeec--------------c-cc----cccccccCchHHH------------HHH--hhhhcc----CCCEEEEeCc
Q 023563 122 LDSIVTHD--------------G-VK----LPCCALTTLSSFR------------QKF--GSDAYD----QVDVIGIDEA 164 (280)
Q Consensus 122 ~~~v~~~~--------------~-~~----~~~~~~~~l~~~~------------~~~--a~aL~~----~p~lLlLDEP 164 (280)
+..++... . .. .......++.+.. .+. +++++. +|+++++|||
T Consensus 79 ~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEP 158 (212)
T cd03274 79 VEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEI 158 (212)
T ss_pred EEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCC
Confidence 11111110 0 00 0011111221111 111 456653 5899999999
Q ss_pred ccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 165 QFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 165 ~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
+.. ..+++.++++.+ +.++|++||+.+.. + +||++++|..
T Consensus 159 t~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~~~~-~----------~~d~v~~~~~ 204 (212)
T cd03274 159 DAALDFRNVSIVANYIKERTK--NAQFIVISLRNNMF-E----------LADRLVGIYK 204 (212)
T ss_pred CcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcHHHH-H----------hCCEEEEEEe
Confidence 654 357888888753 68999999996544 3 8999999975
No 381
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.73 E-value=4.7e-18 Score=158.16 Aligned_cols=159 Identities=16% Similarity=0.214 Sum_probs=107.4
Q ss_pred cEEEcCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEec----CCc--ccccccc
Q 023563 52 MVSPRPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIK----SNK--DTRYGLD 123 (280)
Q Consensus 52 ~l~~~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~----~~~--~~~~~~~ 123 (280)
-|+++|+.+.|... .=+..||++|++||++.|+|.|||||||++ +++.|+.. +...|..-. ++. +.|.-++
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~-~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfS 400 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLA-MLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFS 400 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHH-HHHhcccCCCCCceeECCccCCCCCHHHHHHHHH
Confidence 59999999999764 458899999999999999999999999999 99999843 222221111 111 1111122
Q ss_pred eeeeecccccccccc------cCchHHHH--------------------------HHh--hhhccCCCEEEEeC------
Q 023563 124 SIVTHDGVKLPCCAL------TTLSSFRQ--------------------------KFG--SDAYDQVDVIGIDE------ 163 (280)
Q Consensus 124 ~v~~~~~~~~~~~~~------~~l~~~~~--------------------------~~a--~aL~~~p~lLlLDE------ 163 (280)
.+|....+....+.. ..++.+++ |.| .|++.+-+++++||
T Consensus 401 avFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQD 480 (546)
T COG4615 401 AVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQD 480 (546)
T ss_pred HHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCC
Confidence 222211111110100 11111111 112 26888999999999
Q ss_pred cccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 164 AQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 164 P~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
|.++..++..+.-+.+++|+||+.+|||-..-. .|||++.+.+ +|+..
T Consensus 481 PaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-----------~ADrll~~~~G~~~e~ 529 (546)
T COG4615 481 PAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-----------HADRLLEMRNGQLSEL 529 (546)
T ss_pred hHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh-----------hHHHHHHHhcCceeec
Confidence 678888888887777778999999999987765 7999999999 77643
No 382
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.71 E-value=5.5e-17 Score=156.69 Aligned_cols=163 Identities=18% Similarity=0.200 Sum_probs=111.9
Q ss_pred CCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCccccc
Q 023563 49 IHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKDTRY 120 (280)
Q Consensus 49 ~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~~~~ 120 (280)
..+.++++|++..- .++|+||++.+|||+||.|--|||+|-|+ +.|.|+. ++|+.+....+....+.
T Consensus 260 ~~~~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~-~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~ 334 (500)
T COG1129 260 GEPVLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELA-RALFGARPASSGEILLDGKPVRIRSPRDAIKA 334 (500)
T ss_pred CCcEEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHH-HHHhCCCcCCCceEEECCEEccCCCHHHHHHc
Confidence 45689999987542 58899999999999999999999999999 9999963 34554433322222222
Q ss_pred ccceeeee-------------ccccccccc------ccCc---hHHHHHH----------------------------hh
Q 023563 121 GLDSIVTH-------------DGVKLPCCA------LTTL---SSFRQKF----------------------------GS 150 (280)
Q Consensus 121 ~~~~v~~~-------------~~~~~~~~~------~~~l---~~~~~~~----------------------------a~ 150 (280)
++.++... .+.....+. +.+- ....+++ |+
T Consensus 335 Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlar 414 (500)
T COG1129 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLAR 414 (500)
T ss_pred CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHH
Confidence 33322220 000000000 0000 0000111 56
Q ss_pred hhccCCCEEEEeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 151 DAYDQVDVIGIDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
+|+.+|++|||||||- ..+++++|++++++ |++||++|-+++++.. +||||++|++ +++..-
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iSSElpEll~----------~~DRIlVm~~Gri~~e~ 483 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELPELLG----------LSDRILVMREGRIVGEL 483 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEeCChHHHHh----------hCCEEEEEECCEEEEEe
Confidence 8999999999999964 45799999999997 9999999999998865 9999999999 887654
Q ss_pred Ccce
Q 023563 224 KRAF 227 (280)
Q Consensus 224 ~~~~ 227 (280)
+.++
T Consensus 484 ~~~~ 487 (500)
T COG1129 484 DREE 487 (500)
T ss_pred cccc
Confidence 4443
No 383
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.70 E-value=5.8e-17 Score=144.13 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=43.0
Q ss_pred hhhhc----cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 149 GSDAY----DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 149 a~aL~----~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
|++++ .+|+++|+|||++.. .+++.|+++++ +.++|++||+.+. .+ +||++++|.-
T Consensus 170 a~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~~-~~----------~~d~i~~l~~ 235 (243)
T cd03272 170 ALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPEL-LE----------VADKFYGVKF 235 (243)
T ss_pred HHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHH-Hh----------hCCEEEEEEE
Confidence 55675 368999999996643 47788888754 7889998998664 44 8999999875
No 384
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.70 E-value=9.6e-17 Score=169.60 Aligned_cols=167 Identities=19% Similarity=0.262 Sum_probs=118.5
Q ss_pred CCccEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-------CCeeEEEecCCccc
Q 023563 49 IHSMVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-------KGRNVAVIKSNKDT 118 (280)
Q Consensus 49 ~~~~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-------~g~~i~~~~~~~~~ 118 (280)
.++.++++|.+++.+. .+.|+||||+|++|+.+||+||-|||||+|+ ..|.|... -...++|.+|.+..
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL-~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI 593 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLL-SAILGEMPKLSGSVAVNGSVAYVPQQPWI 593 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHH-HHHhcCcccccceEEEcCeEEEeccccHh
Confidence 3457999999999964 3489999999999999999999999999999 88888521 23358899987654
Q ss_pred ccc-cce--eeee---cccc---ccc---------cc----------ccCch-HHHHH--HhhhhccCCCEEEEeCcccH
Q 023563 119 RYG-LDS--IVTH---DGVK---LPC---------CA----------LTTLS-SFRQK--FGSDAYDQVDVIGIDEAQFF 167 (280)
Q Consensus 119 ~~~-~~~--v~~~---~~~~---~~~---------~~----------~~~l~-~~~~~--~a~aL~~~p~lLlLDEP~~~ 167 (280)
..+ +.. +|.. ..++ ..+ +. -.+++ ....| .|||+.++.|++|||-|.++
T Consensus 594 ~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSA 673 (1381)
T KOG0054|consen 594 QNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSA 673 (1381)
T ss_pred hCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchh
Confidence 221 100 1110 0000 000 00 01222 22222 28999999999999999665
Q ss_pred HH------HHH-HHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 168 ED------LYD-FCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 168 ~~------i~~-~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
.| +++ .|+.+.+ ++|+|+|||.+++.. .||.|++|++ ++...|+.+|+.
T Consensus 674 VDahvg~~if~~ci~~~L~--~KT~ILVTHql~~L~-----------~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 674 VDAHVGKHIFEECIRGLLR--GKTVILVTHQLQFLP-----------HADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred hhHhhhHHHHHHHHHhhhc--CCEEEEEeCchhhhh-----------hCCEEEEecCCeEecccCHHHHH
Confidence 44 443 3444433 899999999999886 6999999999 999999999887
No 385
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.69 E-value=3.3e-16 Score=137.90 Aligned_cols=151 Identities=16% Similarity=0.159 Sum_probs=92.6
Q ss_pred CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchH
Q 023563 64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSS 143 (280)
Q Consensus 64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 143 (280)
...+.+|++|++.+ ++++|+|||||||||++ +.++++.+.++.-.+++........+..++.+... .+.+ ..+...
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstll-r~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~-~~~l-s~g~s~ 92 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYL-RQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGA-SDDL-AGGRST 92 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHH-HHHHHHHHHhccCCeeccccceecceeeEeccCCc-hhhh-ccCcch
Confidence 45689999999988 99999999999999999 98887655444323333222111111112211111 0001 112222
Q ss_pred HHH---HHhh--hhccCCCEEEEeCc---ccHHH----HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccce
Q 023563 144 FRQ---KFGS--DAYDQVDVIGIDEA---QFFED----LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADS 211 (280)
Q Consensus 144 ~~~---~~a~--aL~~~p~lLlLDEP---~~~~~----i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~ 211 (280)
+.. +.+. ..+.+|+++||||| ++..| ...+++.+.+..+.++|++||+.++.. ++|+
T Consensus 93 f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~-----------l~~~ 161 (216)
T cd03284 93 FMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTE-----------LEGK 161 (216)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHH-----------Hhhc
Confidence 221 1122 23579999999999 77665 244455555534889999999986554 7888
Q ss_pred EEEeec-eeccccCcceee
Q 023563 212 VTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 212 i~~L~~-~i~~~g~~~~~~ 229 (280)
+..+.+ .+...++.+++.
T Consensus 162 ~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 162 LPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred CCCeEEEEEEEEeeCCeEE
Confidence 777777 666666666664
No 386
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.68 E-value=2.5e-16 Score=139.22 Aligned_cols=148 Identities=18% Similarity=0.163 Sum_probs=90.4
Q ss_pred CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCch
Q 023563 63 QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLS 142 (280)
Q Consensus 63 ~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 142 (280)
+...+.+|+++++++|++++|.||||+||||++ +.++-..+..+--.+++.....-..+..++.+.+.. +.. ..+++
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll-~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~-d~~-~~~lS 91 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYI-RQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGAS-DSQ-LKGVS 91 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHH-HHHHHHHHHHHhCCCcCcccEEEeccceeEeeeccc-cch-hcCcC
Confidence 345789999999999999999999999999999 776543221100012222211111112222221111 111 23333
Q ss_pred HHHH---HHhhhh--ccCCCEEEEeCc---ccHHH----HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccc
Q 023563 143 SFRQ---KFGSDA--YDQVDVIGIDEA---QFFED----LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLAD 210 (280)
Q Consensus 143 ~~~~---~~a~aL--~~~p~lLlLDEP---~~~~~----i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD 210 (280)
.+.. +.++++ +.+|+++||||| |+..| .+.+++.+.++.|.++|++||+ .++.+ +||
T Consensus 92 ~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~-~el~~----------~~~ 160 (222)
T cd03285 92 TFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHF-HELTA----------LAD 160 (222)
T ss_pred hHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEech-HHHHH----------Hhh
Confidence 3332 224445 689999999999 77665 2333455554348999999997 54544 899
Q ss_pred eEEEeec-eeccccC
Q 023563 211 SVTKLTA-RCEFCGK 224 (280)
Q Consensus 211 ~i~~L~~-~i~~~g~ 224 (280)
++..+++ ++...+.
T Consensus 161 ~~~~i~~g~~~~~~~ 175 (222)
T cd03285 161 EVPNVKNLHVTALTD 175 (222)
T ss_pred cCCCeEEEEEEEEEe
Confidence 9999988 7665543
No 387
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=1.7e-16 Score=164.30 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=56.8
Q ss_pred hhhhcc---CCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe----
Q 023563 149 GSDAYD---QVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL---- 215 (280)
Q Consensus 149 a~aL~~---~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L---- 215 (280)
+++|+. +|+++|||||++.+ .++++|+++.++ |.|||+++|+++++. .||+++.|
T Consensus 840 A~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~-G~TVIvi~H~~~~i~-----------~aD~ii~Lgp~~ 907 (924)
T TIGR00630 840 AKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ-GNTVVVIEHNLDVIK-----------TADYIIDLGPEG 907 (924)
T ss_pred HHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-----------hCCEEEEecCCc
Confidence 456775 59999999997654 478888888865 999999999999885 79999999
Q ss_pred --ec-eeccccCccee
Q 023563 216 --TA-RCEFCGKRAFF 228 (280)
Q Consensus 216 --~~-~i~~~g~~~~~ 228 (280)
++ ++++.|+++++
T Consensus 908 G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 908 GDGGGTIVASGTPEEV 923 (924)
T ss_pred cCCCCEEEEeCCHHHh
Confidence 56 89999988764
No 388
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.67 E-value=3.5e-16 Score=136.49 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=47.7
Q ss_pred hhhhccCCCEEEEeCcccH------H-HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 149 GSDAYDQVDVIGIDEAQFF------E-DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~------~-~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
+++++.+|+++|+|||++. . .+.++|++++++.|.+||++||+++.+. .||+++.|..
T Consensus 133 a~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~-----------~~d~i~~l~~ 197 (204)
T cd03240 133 AETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVD-----------AADHIYRVEK 197 (204)
T ss_pred HHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHh-----------hCCEEEEEee
Confidence 5678899999999999543 4 5777787776644889999999998774 7999999976
No 389
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.67 E-value=3.2e-16 Score=136.11 Aligned_cols=143 Identities=17% Similarity=0.146 Sum_probs=82.7
Q ss_pred eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc-cceeeeecccccccccccCchHHHH--
Q 023563 70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG-LDSIVTHDGVKLPCCALTTLSSFRQ-- 146 (280)
Q Consensus 70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~~~~-- 146 (280)
..|+++..|++++|+||||||||||+ +++++..+.++.-.+++.. ..+.+ ...++.+..... ....++..+..
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll-~~i~~~~~~~~~g~~~~~~-~~~i~~~dqi~~~~~~~d--~i~~~~s~~~~e~ 96 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYL-RSIGLAVLLAQIGCFVPAE-SASIPLVDRIFTRIGAED--SISDGRSTFMAEL 96 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHH-HHHHHHHHHHHcCCCcccc-ccccCCcCEEEEEecCcc--cccCCceeHHHHH
Confidence 44566778999999999999999999 8888543211110122211 11111 111111111000 01112222211
Q ss_pred -HH--hhhhccCCCEEEEeCcccHH------HHH-HHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563 147 -KF--GSDAYDQVDVIGIDEAQFFE------DLY-DFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT 216 (280)
Q Consensus 147 -~~--a~aL~~~p~lLlLDEP~~~~------~i~-~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~ 216 (280)
+. ..+++.+|+++|+|||+... .+. .+++.+.+. +.++|++||+.+++. .|+++..+.
T Consensus 97 ~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~-~~~vi~~tH~~~~~~-----------~~~~~~~l~ 164 (202)
T cd03243 97 LELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEK-GCRTLFATHFHELAD-----------LPEQVPGVK 164 (202)
T ss_pred HHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEEEECChHHHHH-----------HhhcCCCeE
Confidence 11 23456799999999995432 343 345556554 999999999998876 688887777
Q ss_pred c-eeccccCccee
Q 023563 217 A-RCEFCGKRAFF 228 (280)
Q Consensus 217 ~-~i~~~g~~~~~ 228 (280)
. .+...++..++
T Consensus 165 ~~~~~~~~~~~~~ 177 (202)
T cd03243 165 NLHMEELITTGGL 177 (202)
T ss_pred EEEEEEEecCCee
Confidence 7 77666655443
No 390
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.67 E-value=1.3e-16 Score=129.38 Aligned_cols=36 Identities=33% Similarity=0.431 Sum_probs=34.0
Q ss_pred eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563 68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ 104 (280)
Q Consensus 68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~ 104 (280)
|+|+||+|++|++++|+||||||||||+ ++|.|+..
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl-~~l~g~~~ 36 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLL-KALAGLLP 36 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHH-HHHTTSSH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccce-eeeccccc
Confidence 7899999999999999999999999999 99999854
No 391
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.66 E-value=6.6e-16 Score=134.31 Aligned_cols=124 Identities=16% Similarity=0.121 Sum_probs=72.3
Q ss_pred CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---hCCeeEEEecCCcccccccceeeeecccccccccccC
Q 023563 64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---QKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTT 140 (280)
Q Consensus 64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 140 (280)
+..+++|++|+. |++++|+||||||||||+ +.|+|.. ..|..+. ... ..+....++..... .+.+ ..+
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTll-r~i~~~~~l~~~G~~v~---a~~-~~~q~~~l~~~~~~-~d~l-~~~ 83 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFL-RTIGVNVILAQAGAPVC---ASS-FELPPVKIFTSIRV-SDDL-RDG 83 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHH-HHHHHHHHHHHcCCEEe---cCc-cCcccceEEEeccc-hhcc-ccc
Confidence 346888887776 699999999999999999 9888853 2454432 110 00001111111000 0000 001
Q ss_pred chHHH---HHHhh--hhcc--CCCEEEEeCcccHH------HH-HHHHHHHHhhcCCEEEEEEechhHhhh
Q 023563 141 LSSFR---QKFGS--DAYD--QVDVIGIDEAQFFE------DL-YDFCREAADHDGKTVIVAGLDGDYLRR 197 (280)
Q Consensus 141 l~~~~---~~~a~--aL~~--~p~lLlLDEP~~~~------~i-~~~l~~l~~~~g~tviivtHdl~~~~~ 197 (280)
...+. .+... ..+. +|+++|+|||+... .+ ..+++++.+. |.++|++||+++++..
T Consensus 84 ~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~-~~tiiivTH~~~~~~~ 153 (199)
T cd03283 84 ISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNK-NTIGIISTHDLELADL 153 (199)
T ss_pred cChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHC-CCEEEEEcCcHHHHHh
Confidence 11111 11111 2233 99999999995432 33 3456777654 9999999999998864
No 392
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.66 E-value=6.2e-16 Score=134.20 Aligned_cols=133 Identities=20% Similarity=0.195 Sum_probs=79.7
Q ss_pred eeEeeeeEeeCce-EEEEEcCCCCcHHHHHHHHHh--------cchhCCeeEEEecCCcccccc-cceeeeecccccccc
Q 023563 67 LHSEASVSSPSGE-IHVIVGPMFAGKTTTLLRRIQ--------AETQKGRNVAVIKSNKDTRYG-LDSIVTHDGVKLPCC 136 (280)
Q Consensus 67 vl~~isl~i~~Ge-i~~liGpNGsGKSTLl~~~l~--------gl~~~g~~i~~~~~~~~~~~~-~~~v~~~~~~~~~~~ 136 (280)
.+-++||++.+|+ +++|.||||||||||+ +.+. |..... ......+ +...+...+.. ..
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll-~~i~~~~~~~~~G~~vp~--------~~~~~~~~~~~~~~~lg~~--~~ 84 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTL-KTLGLLTLMAQSGLPIPA--------AEGSSLPVFENIFADIGDE--QS 84 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHH-HHHHHHHHHHHcCCCccc--------cccccCcCccEEEEecCch--hh
Confidence 3457899999995 8999999999999999 8776 322111 1000111 11111111100 00
Q ss_pred cccCchHHH---HHH--hhhhccCCCEEEEeCcccHH------HHH-HHHHHHHhhcCCEEEEEEechhHhhhccCCccc
Q 023563 137 ALTTLSSFR---QKF--GSDAYDQVDVIGIDEAQFFE------DLY-DFCREAADHDGKTVIVAGLDGDYLRRSFGSVID 204 (280)
Q Consensus 137 ~~~~l~~~~---~~~--a~aL~~~p~lLlLDEP~~~~------~i~-~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ 204 (280)
...++..+. .+. ....+.+|+++|+|||+... .++ .+++++.+. |.++|++||+.+.. +
T Consensus 85 l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~-~~~vi~~tH~~~l~-~------- 155 (200)
T cd03280 85 IEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLER-GALVIATTHYGELK-A------- 155 (200)
T ss_pred hhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECCHHHHH-H-------
Confidence 011111111 111 11235799999999995433 343 456777654 99999999996544 3
Q ss_pred cccccceEEEeec-eeccc
Q 023563 205 IIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 205 ll~~aD~i~~L~~-~i~~~ 222 (280)
+||++..|++ .+.+.
T Consensus 156 ---~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 156 ---YAYKREGVENASMEFD 171 (200)
T ss_pred ---HHhcCCCeEEEEEEEe
Confidence 8999999998 77655
No 393
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.65 E-value=1.1e-16 Score=166.62 Aligned_cols=167 Identities=18% Similarity=0.192 Sum_probs=112.6
Q ss_pred cEEEcCceEEe----CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCe---eEE--EecCC-cccccc
Q 023563 52 MVSPRPPLFSL----QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGR---NVA--VIKSN-KDTRYG 121 (280)
Q Consensus 52 ~l~~~~ls~~y----~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~---~i~--~~~~~-~~~~~~ 121 (280)
+...+|+.+.- +.+.+|+||+=-+++|-.++|+|+||||||||| .+|+|=.-.|. ++. -.+-. ...+..
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLL-dvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~ 865 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLL-DVLAGRKTGGYIEGDILISGFPKDQETFARV 865 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHH-HHHhcCcccceEEeEEEECCeeCchhhhccc
Confidence 34444544444 457899999999999999999999999999999 99988321111 110 00111 111223
Q ss_pred cceeeeecccccc------------------------------cccccCchHHHHHH------------------hhhhc
Q 023563 122 LDSIVTHDGVKLP------------------------------CCALTTLSSFRQKF------------------GSDAY 153 (280)
Q Consensus 122 ~~~v~~~~~~~~~------------------------------~~~~~~l~~~~~~~------------------a~aL~ 153 (280)
.+++-|++-.... .+.+.++.++.+.. |-+|+
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELv 945 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELV 945 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEe
Confidence 3444443221100 01122333333322 23689
Q ss_pred cCC-CEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec--eeccccC
Q 023563 154 DQV-DVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA--RCEFCGK 224 (280)
Q Consensus 154 ~~p-~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~--~i~~~g~ 224 (280)
.+| .||+|||||+++| +++.++++++. |.||+|+-|.+.- +|++.-|++++|+. ++++.|+
T Consensus 946 A~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~t-GqtIlCTIHQPS~---------~ife~FD~LLLLkrGGqtVY~G~ 1015 (1391)
T KOG0065|consen 946 ANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADT-GQTILCTIHQPSI---------DIFEAFDELLLLKRGGQTVYFGP 1015 (1391)
T ss_pred cCCceeEEecCCCCCccHHHHHHHHHHHHHHHhc-CCeEEEEecCCcH---------HHHHHHhHHHHHhcCCeEEEecC
Confidence 999 9999999988765 89999999996 9999999999873 45678999999987 8999999
Q ss_pred cceee
Q 023563 225 RAFFT 229 (280)
Q Consensus 225 ~~~~~ 229 (280)
..+-.
T Consensus 1016 lG~~s 1020 (1391)
T KOG0065|consen 1016 LGENS 1020 (1391)
T ss_pred ccccc
Confidence 87654
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=2.6e-16 Score=148.18 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=96.7
Q ss_pred CCccEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---------CCeeEEEecCCccc
Q 023563 49 IHSMVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---------KGRNVAVIKSNKDT 118 (280)
Q Consensus 49 ~~~~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---------~g~~i~~~~~~~~~ 118 (280)
..|+|-+-+|+|.| +.+++++.++|-|.--+.++|+||||.|||||+ +++.|-.. ..-.|+++.|+...
T Consensus 583 ~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlL-kLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E 661 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLL-KLLIGKLDPNDGELRKNHRLRIGWFDQHANE 661 (807)
T ss_pred CCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHH-HHHhcCCCCCcchhhccceeeeechhhhhHH
Confidence 34689999999999 668899999999999999999999999999999 88877421 12245666555432
Q ss_pred ccccc----eeeeecccc-----cccccccCchHHH-------------HHHhh--hhccCCCEEEEeCcccHHHH--HH
Q 023563 119 RYGLD----SIVTHDGVK-----LPCCALTTLSSFR-------------QKFGS--DAYDQVDVIGIDEAQFFEDL--YD 172 (280)
Q Consensus 119 ~~~~~----~v~~~~~~~-----~~~~~~~~l~~~~-------------~~~a~--aL~~~p~lLlLDEP~~~~~i--~~ 172 (280)
..... .++++...+ ...+...++...+ .+.+. --+..|++|||||||+.++| ++
T Consensus 662 ~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESID 741 (807)
T KOG0066|consen 662 ALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESID 741 (807)
T ss_pred hhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHH
Confidence 11110 011110000 0011111111111 11111 12469999999999998874 66
Q ss_pred HHHHHHhhcCCEEEEEEechhHhhh
Q 023563 173 FCREAADHDGKTVIVAGLDGDYLRR 197 (280)
Q Consensus 173 ~l~~l~~~~g~tviivtHdl~~~~~ 197 (280)
.|.+..++.+..|||||||-.++.+
T Consensus 742 ALaEAIney~GgVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 742 ALAEAINEYNGGVIMVSHDERLIVE 766 (807)
T ss_pred HHHHHHHhccCcEEEEecccceeee
Confidence 7777777778899999999887754
No 395
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.64 E-value=5e-16 Score=167.92 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=59.1
Q ss_pred hhhhc---cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee---
Q 023563 149 GSDAY---DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT--- 216 (280)
Q Consensus 149 a~aL~---~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~--- 216 (280)
|++|+ .+|++||||||++.+ .++++|.+++++ |.|||++||+++++ + +||++++|.
T Consensus 821 AraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~-G~TVIiIsHdl~~i-~----------~aDrVi~L~p~g 888 (1809)
T PRK00635 821 AYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-GHTVVIIEHNMHVV-K----------VADYVLELGPEG 888 (1809)
T ss_pred HHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH-H----------hCCEEEEEccCC
Confidence 45675 699999999997654 588889998876 99999999999988 4 899999995
Q ss_pred ---c-eeccccCcceee
Q 023563 217 ---A-RCEFCGKRAFFT 229 (280)
Q Consensus 217 ---~-~i~~~g~~~~~~ 229 (280)
+ ++++.|+++++.
T Consensus 889 g~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 889 GNLGGYLLASCSPEELI 905 (1809)
T ss_pred CCCCCEEEEeCCHHHHH
Confidence 5 889999998876
No 396
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.64 E-value=9.8e-16 Score=158.93 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=59.4
Q ss_pred hhhhccCC---CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe----
Q 023563 149 GSDAYDQV---DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL---- 215 (280)
Q Consensus 149 a~aL~~~p---~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L---- 215 (280)
+++|+.+| +++|||||++.+ .+++.|+++.++ |.|||++||+++++. .||+|+.|
T Consensus 842 AraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~-G~TVIiitH~~~~i~-----------~aD~ii~Lgp~~ 909 (943)
T PRK00349 842 AKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK-GNTVVVIEHNLDVIK-----------TADWIIDLGPEG 909 (943)
T ss_pred HHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-----------hCCEEEEecCCc
Confidence 45788899 999999997654 478888888765 999999999999885 79999999
Q ss_pred --ec-eeccccCcceee
Q 023563 216 --TA-RCEFCGKRAFFT 229 (280)
Q Consensus 216 --~~-~i~~~g~~~~~~ 229 (280)
++ ++++.|+++++.
T Consensus 910 G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 910 GDGGGEIVATGTPEEVA 926 (943)
T ss_pred CCCCCEEEEeCCHHHHH
Confidence 56 899999999886
No 397
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.63 E-value=2.8e-15 Score=130.86 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=79.6
Q ss_pred CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccccc-ceeeeecccccccccccCc
Q 023563 63 QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGL-DSIVTHDGVKLPCCALTTL 141 (280)
Q Consensus 63 ~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l 141 (280)
.+..+.+|++|+++.|++++|+||||+||||++ +.++++.+..+--.+++... ...++ ..++........ ...+.
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll-~~i~~~~~la~~G~~vpa~~-~~l~~~d~I~~~~~~~d~--~~~~~ 89 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYL-KQIALLAIMAQIGCFVPAEY-ATLPIFNRLLSRLSNDDS--MERNL 89 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHH-HHHHHHHHHHHcCCCcchhh-cCccChhheeEecCCccc--cchhh
Confidence 355789999999999999999999999999999 88887643221111112111 11111 112221111000 01112
Q ss_pred hHHHH---H--HhhhhccCCCEEEEeCc---ccHHH----HHHHHHHHHhhcCCEEEEEEechhHhhh
Q 023563 142 SSFRQ---K--FGSDAYDQVDVIGIDEA---QFFED----LYDFCREAADHDGKTVIVAGLDGDYLRR 197 (280)
Q Consensus 142 ~~~~~---~--~a~aL~~~p~lLlLDEP---~~~~~----i~~~l~~l~~~~g~tviivtHdl~~~~~ 197 (280)
+.+.. + ...+++.+|+++|+||| +.-.+ ..++++.+.+. |.++|++||+.+++..
T Consensus 90 S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~-~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 90 STFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKK-ESTVFFATHFRDIAAI 156 (204)
T ss_pred hHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECChHHHHHH
Confidence 11111 1 12346789999999999 32322 35566777765 9999999999998864
No 398
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.62 E-value=2.1e-15 Score=148.47 Aligned_cols=144 Identities=19% Similarity=0.181 Sum_probs=102.0
Q ss_pred CccEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---------CeeEEEecCCcccc
Q 023563 50 HSMVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---------GRNVAVIKSNKDTR 119 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---------g~~i~~~~~~~~~~ 119 (280)
...|+++|++..-++ +..+++++|+|++|+.+.|.||||||||||+ |.|+|+... +.++.|++|.+-..
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLl-RaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p 468 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLL-RALAGLWPWGSGRISMPADSALLFLPQRPYLP 468 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHH-HHHhccCccCCCceecCCCCceEEecCCCCCC
Confidence 357999999998854 7899999999999999999999999999999 999998542 33456666655322
Q ss_pred cc-cceeeee--------cccccccccccCchHHHHHH--------------------hhhhccCCCEEEEeCcccHHH-
Q 023563 120 YG-LDSIVTH--------DGVKLPCCALTTLSSFRQKF--------------------GSDAYDQVDVIGIDEAQFFED- 169 (280)
Q Consensus 120 ~~-~~~v~~~--------~~~~~~~~~~~~l~~~~~~~--------------------a~aL~~~p~lLlLDEP~~~~~- 169 (280)
.+ +...+-+ +..+...+...++.++.++. ||.++++|++++|||.|++.|
T Consensus 469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 11 0011100 01112233445566665554 678999999999999988764
Q ss_pred -----HHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563 170 -----LYDFCREAADHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 170 -----i~~~l~~l~~~~g~tviivtHdl~~~~ 196 (280)
+++.+++-. .+.|||-|+|......
T Consensus 549 ~~e~~l~q~l~~~l--p~~tvISV~Hr~tl~~ 578 (604)
T COG4178 549 ETEDRLYQLLKEEL--PDATVISVGHRPTLWN 578 (604)
T ss_pred HHHHHHHHHHHhhC--CCCEEEEeccchhhHH
Confidence 444444332 4899999999987665
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.62 E-value=4.7e-15 Score=140.32 Aligned_cols=155 Identities=16% Similarity=0.181 Sum_probs=104.8
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CC----eeEEEecCCcccccc--c
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KG----RNVAVIKSNKDTRYG--L 122 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g----~~i~~~~~~~~~~~~--~ 122 (280)
.+++--.++|.||+.. |.==.=+|..||++|++||||-||||+. ++|+|... .| -+++|-+|.....+. +
T Consensus 341 ~lv~y~~~~k~~g~F~-L~V~~G~i~~gEvigilGpNgiGKTTFv-k~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV 418 (591)
T COG1245 341 TLVEYPDLKKTYGDFK-LEVEEGEIYDGEVIGILGPNGIGKTTFV-KLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTV 418 (591)
T ss_pred eeeecchheeecCceE-EEecCCeeecceEEEEECCCCcchHHHH-HHHhccccCCCCCCccceEeecceeecCCCCCcH
Confidence 3677778888888643 2222335677889999999999999999 99999743 12 466776665433221 1
Q ss_pred ceeee---e-----cccccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHHH------HHHHH
Q 023563 123 DSIVT---H-----DGVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFED------LYDFC 174 (280)
Q Consensus 123 ~~v~~---~-----~~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~~------i~~~l 174 (280)
..++. . .....+.....++..+.++. |.+|..++++.|||||.+.+| +...|
T Consensus 419 ~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvI 498 (591)
T COG1245 419 EDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVI 498 (591)
T ss_pred HHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHH
Confidence 11111 0 00001111223344444433 557899999999999977654 56778
Q ss_pred HHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 175 REAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 175 ~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
++....+++|.++|.||+-++.. ++||++++..
T Consensus 499 RR~~e~~~kta~vVdHDi~~~dy----------vsDr~ivF~G 531 (591)
T COG1245 499 RRFIENNEKTALVVDHDIYMIDY----------VSDRLIVFEG 531 (591)
T ss_pred HHHHhhcCceEEEEecceehhhh----------hhceEEEEec
Confidence 88888889999999999999886 8999998765
No 400
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.62 E-value=1e-14 Score=125.88 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=108.0
Q ss_pred ccEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCee--------------------E
Q 023563 51 SMVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRN--------------------V 109 (280)
Q Consensus 51 ~~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~--------------------i 109 (280)
..|+++++.|.|.. .+++-|+|++++.|....++|.||||||||+ ++++|-...+.. .
T Consensus 12 ~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlL-KiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLL-KILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred ceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhH-HHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 36999999999954 6899999999999999999999999999999 999996432221 1
Q ss_pred EEecCCccccccc-ceeeeecccc----------------cccccccC---------chH---HHHHHhhhhccCCCEEE
Q 023563 110 AVIKSNKDTRYGL-DSIVTHDGVK----------------LPCCALTT---------LSS---FRQKFGSDAYDQVDVIG 160 (280)
Q Consensus 110 ~~~~~~~~~~~~~-~~v~~~~~~~----------------~~~~~~~~---------l~~---~~~~~a~aL~~~p~lLl 160 (280)
.|+...-.....+ +.+.-+.... .....+.+ .++ -+-+.++.|+..-++||
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLL 170 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLL 170 (291)
T ss_pred eEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEE
Confidence 2221110000000 0000000000 00000000 000 01111446788889999
Q ss_pred EeCcc------cHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccc
Q 023563 161 IDEAQ------FFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFC 222 (280)
Q Consensus 161 LDEP~------~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~ 222 (280)
|||.| ++.++++.+++-++++|.|||..||-.+=.+. ++.+++.|+. +++..
T Consensus 171 LDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~----------Wpthl~yi~~Gkl~~~ 229 (291)
T KOG2355|consen 171 LDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLET----------WPTHLVYIKSGKLVDN 229 (291)
T ss_pred eeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhh----------cchhEEEecCCeeeec
Confidence 99995 45678999999998899999999999987765 8999999999 88763
No 401
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.62 E-value=1.4e-15 Score=132.17 Aligned_cols=58 Identities=16% Similarity=0.056 Sum_probs=45.5
Q ss_pred hhhh----ccCCCEEEEeCcccHH------HHHHHHHHHHhh--cCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563 149 GSDA----YDQVDVIGIDEAQFFE------DLYDFCREAADH--DGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT 216 (280)
Q Consensus 149 a~aL----~~~p~lLlLDEP~~~~------~i~~~l~~l~~~--~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~ 216 (280)
++++ +.+|+++|||||+... .+.++|.++.++ .+.+||++||+++++.+ +|+|.+|+
T Consensus 121 a~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~-----------~d~v~~~~ 189 (198)
T cd03276 121 CLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLAS-----------SDDVKVFR 189 (198)
T ss_pred HHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccccc-----------ccceeEEE
Confidence 4556 5899999999996654 477888887653 24689999999999975 49999987
Q ss_pred c
Q 023563 217 A 217 (280)
Q Consensus 217 ~ 217 (280)
.
T Consensus 190 ~ 190 (198)
T cd03276 190 M 190 (198)
T ss_pred e
Confidence 6
No 402
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.60 E-value=7.4e-15 Score=131.54 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=46.3
Q ss_pred hhhhcc----CCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 149 GSDAYD----QVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 149 a~aL~~----~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
+++++. .|+++|+|||++.. .+.+.|++++++ |.++|++||+.+... +||++++|..
T Consensus 167 a~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~~~~~-----------~~d~i~~~~~ 233 (247)
T cd03275 167 ALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKEEFFS-----------KADALVGVYR 233 (247)
T ss_pred HHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCHHHHh-----------hCCeEEEEEe
Confidence 456665 48999999997654 477888888765 999999999987664 8999999876
No 403
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.57 E-value=1.4e-14 Score=129.83 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=42.2
Q ss_pred hhhhc----cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563 149 GSDAY----DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT 216 (280)
Q Consensus 149 a~aL~----~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~ 216 (280)
+++++ .+|+++|+|||++.. .+++.|+++. + |.++|++||+.+... .||+++-++
T Consensus 178 a~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~~ii~iSH~~~~~~-----------~~d~v~~~~ 242 (251)
T cd03273 178 SLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GSQFIVVSLKEGMFN-----------NANVLFRTR 242 (251)
T ss_pred HHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECCHHHHH-----------hCCEEEEEE
Confidence 44555 578999999996543 4777777774 3 899999999955443 899998876
No 404
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.57 E-value=1.3e-14 Score=131.79 Aligned_cols=146 Identities=18% Similarity=0.129 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhh
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGS 150 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~ 150 (280)
.-++|+||||||||||+ +.++|+.. .|+++..+.........+..+.|. ........+.+......-...
T Consensus 112 ~~~~i~g~~g~GKttl~-~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~-~~~~r~~v~~~~~k~~~~~~~ 189 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLL-RDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQH-DVGIRTDVLDGCPKAEGMMML 189 (270)
T ss_pred eEEEEEcCCCCCHHHHH-HHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccc-cccccccccccchHHHHHHHH
Confidence 57899999999999999 99999743 345554322111111112223332 211111112222221111222
Q ss_pred hhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhc-cCCcccc--ccccceEEEeeceeccccCcce
Q 023563 151 DAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRS-FGSVIDI--IPLADSVTKLTARCEFCGKRAF 227 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~-~~~~~~l--l~~aD~i~~L~~~i~~~g~~~~ 227 (280)
..+.+|++||+|||.....+..+++.+. + |.++|++||+.+..... =-.+..| ..++||+++|+++- ..|++++
T Consensus 190 i~~~~P~villDE~~~~e~~~~l~~~~~-~-G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~-~~g~~~~ 266 (270)
T TIGR02858 190 IRSMSPDVIVVDEIGREEDVEALLEALH-A-GVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK-GPGTVEA 266 (270)
T ss_pred HHhCCCCEEEEeCCCcHHHHHHHHHHHh-C-CCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC-CCCceee
Confidence 3457999999999988877777776664 4 99999999986652210 0001111 25799999999832 6777776
Q ss_pred ee
Q 023563 228 FT 229 (280)
Q Consensus 228 ~~ 229 (280)
+.
T Consensus 267 i~ 268 (270)
T TIGR02858 267 VY 268 (270)
T ss_pred cc
Confidence 64
No 405
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.54 E-value=6.1e-14 Score=117.84 Aligned_cols=132 Identities=17% Similarity=0.120 Sum_probs=77.2
Q ss_pred EeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCe-eEEEecCCcccccccceeeeecc-cccccccccCchHHHH
Q 023563 69 SEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGR-NVAVIKSNKDTRYGLDSIVTHDG-VKLPCCALTTLSSFRQ 146 (280)
Q Consensus 69 ~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~-~i~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~l~~~~~ 146 (280)
...++.+..+.+..|+|||||||||++ +.+........ .... ....+.+. .+..... ..+....+..-.....
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l-~~i~~~~~~~~~~~~~---~~~~~~g~-~~~~~~~~~i~~~~~lS~G~~~~~ 86 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTIL-DAIGLALGGAQSATRR---RSGVKAGC-IVAAVSAELIFTRLQLSGGEKELS 86 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHH-HHHHHHHHhcchhhhc---cCcccCCC-cceeeEEEEehheeeccccHHHHH
Confidence 344566666779999999999999999 77654322111 0000 00000000 0000000 0000000111122222
Q ss_pred HHhhhhcc----CCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563 147 KFGSDAYD----QVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT 216 (280)
Q Consensus 147 ~~a~aL~~----~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~ 216 (280)
..+++|+. +|+++|+|||... ..+.+.+.++..+ |.++|++||+.+.+. .+|+++.|.
T Consensus 87 ~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~-----------~~d~~~~l~ 154 (162)
T cd03227 87 ALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAE-----------LADKLIHIK 154 (162)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHH-----------hhhhEEEEE
Confidence 33556654 8999999999443 3477777777766 899999999999886 689999997
Q ss_pred c
Q 023563 217 A 217 (280)
Q Consensus 217 ~ 217 (280)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 7
No 406
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.53 E-value=1e-13 Score=132.48 Aligned_cols=168 Identities=17% Similarity=0.182 Sum_probs=118.2
Q ss_pred CccEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeE-EEecCCcccc
Q 023563 50 HSMVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNV-AVIKSNKDTR 119 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i-~~~~~~~~~~ 119 (280)
+++|++++++..-.. ...+++|||+|.+|||+||.|-.|-|-+.|+ .+|+|+.. +|+++ ....+....+
T Consensus 255 ~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~-eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 255 EVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELV-EAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred CeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHH-HHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 679999999977643 5789999999999999999999999999999 99999852 34333 1111111112
Q ss_pred cccceeeeec-------------cccc--------ccccccC---chHHH----HHH-----------------------
Q 023563 120 YGLDSIVTHD-------------GVKL--------PCCALTT---LSSFR----QKF----------------------- 148 (280)
Q Consensus 120 ~~~~~v~~~~-------------~~~~--------~~~~~~~---l~~~~----~~~----------------------- 148 (280)
.+++++.... +... ....+.+ +..+. +++
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~I 413 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLI 413 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhh
Confidence 3333333210 0000 0000011 11111 111
Q ss_pred -hhhhccCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563 149 -GSDAYDQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE 220 (280)
Q Consensus 149 -a~aL~~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~ 220 (280)
||+|..+|++||+.+||-..| +.+.|.+.+++ |+.|+++|-|+|++.+ +||||.+|.+ +++
T Consensus 414 laREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~-G~AVLLiS~dLDEil~----------lsDrIaVi~~Gri~ 482 (501)
T COG3845 414 LARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDA-GKAVLLISEDLDEILE----------LSDRIAVIYEGRIV 482 (501)
T ss_pred hhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhc-CCEEEEEehhHHHHHH----------hhheeeeeeCCcee
Confidence 678999999999999987654 67788888876 9999999999999976 9999999999 999
Q ss_pred cccCcceee
Q 023563 221 FCGKRAFFT 229 (280)
Q Consensus 221 ~~g~~~~~~ 229 (280)
...++++..
T Consensus 483 ~~~~~~~~t 491 (501)
T COG3845 483 GIVPPEEAT 491 (501)
T ss_pred cccccccCC
Confidence 888887643
No 407
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=3.9e-14 Score=135.67 Aligned_cols=157 Identities=15% Similarity=0.137 Sum_probs=103.1
Q ss_pred CccEEEcCceEEeCCe--eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hh--------CCeeEEEecCCccc
Q 023563 50 HSMVSPRPPLFSLQNR--NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQ--------KGRNVAVIKSNKDT 118 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~--~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~--------~g~~i~~~~~~~~~ 118 (280)
.|.+++.+|++.|... ..+.++++.++.-+.++++|+||+||||++ +++.+- .. .+.+++++.|+.-.
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~l-Ki~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd 438 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLL-KILKGDLTPTRGIVGRHPRLRIKYFAQHHVD 438 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHH-HHHhccCCcccceeeecccceecchhHhhhh
Confidence 4689999999999653 589999999999999999999999999999 888873 21 22344444443210
Q ss_pred ccccceeee--------ecccc----cccccccCch---------------HHHHHHhhhhccCCCEEEEeCcccHHHH-
Q 023563 119 RYGLDSIVT--------HDGVK----LPCCALTTLS---------------SFRQKFGSDAYDQVDVIGIDEAQFFEDL- 170 (280)
Q Consensus 119 ~~~~~~v~~--------~~~~~----~~~~~~~~l~---------------~~~~~~a~aL~~~p~lLlLDEP~~~~~i- 170 (280)
.. ...++ ..+.. ...+...+++ ..+-.+|.....+|.+|+|||||+.+|+
T Consensus 439 ~l--~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~d 516 (582)
T KOG0062|consen 439 FL--DKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRD 516 (582)
T ss_pred HH--HHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHH
Confidence 00 00000 00000 0001111110 0000113345789999999999998863
Q ss_pred -HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee
Q 023563 171 -YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC 219 (280)
Q Consensus 171 -~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i 219 (280)
++.|.+..+..+..|||||||.+++.. +|+++++.++ ++
T Consensus 517 sl~AL~~Al~~F~GGVv~VSHd~~fi~~----------~c~E~Wvve~g~v 557 (582)
T KOG0062|consen 517 SLGALAKALKNFNGGVVLVSHDEEFISS----------LCKELWVVEDGKV 557 (582)
T ss_pred HHHHHHHHHHhcCCcEEEEECcHHHHhh----------cCceeEEEcCCcE
Confidence 455554444567789999999999986 9999999988 54
No 408
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.51 E-value=1.5e-13 Score=121.53 Aligned_cols=129 Identities=16% Similarity=0.202 Sum_probs=77.9
Q ss_pred CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc-cceeeeecccccccccccCch
Q 023563 64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG-LDSIVTHDGVKLPCCALTTLS 142 (280)
Q Consensus 64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~ 142 (280)
+..+.+|++|.+.+|++++|.||||+||||++ +.+++..+..+.-.+++... .... +..++.+.+.... ...+.+
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll-~~i~~~~~la~~G~~v~a~~-~~~~~~~~i~~~~~~~d~--~~~~~S 92 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYI-RQVALITIMAQIGSFVPASS-ATLSIFDSVLTRMGASDS--IQHGMS 92 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHH-HHHHHHHHHHhCCCEEEcCc-eEEeccceEEEEecCccc--cccccc
Confidence 35789999999999999999999999999999 98888533211111222211 1111 1122222111000 112333
Q ss_pred HHHHHH---h--hhhccCCCEEEEeCc---ccHHH----HHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563 143 SFRQKF---G--SDAYDQVDVIGIDEA---QFFED----LYDFCREAADHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 143 ~~~~~~---a--~aL~~~p~lLlLDEP---~~~~~----i~~~l~~l~~~~g~tviivtHdl~~~~ 196 (280)
.+.... . ...+.++.++|+||| |+..+ ...+++.+.+..+.++|++||+.+.+.
T Consensus 93 tF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 93 TFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred hHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence 333222 1 123568999999999 44332 345666766544889999999999875
No 409
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.51 E-value=1.6e-13 Score=117.38 Aligned_cols=57 Identities=19% Similarity=0.157 Sum_probs=46.3
Q ss_pred hhhhc----cCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 149 GSDAY----DQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 149 a~aL~----~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
+++++ .+|+++|+|||+.. ..+.+.+.+++++ |.++|++||+.+.+. .+|+++.+..
T Consensus 106 aral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~~~~-----------~adrvi~i~~ 172 (178)
T cd03239 106 ALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKEMFE-----------NADKLIGVLF 172 (178)
T ss_pred HHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHh-----------hCCeEEEEEE
Confidence 55654 69999999999543 3577888888765 899999999998774 7999999875
No 410
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.50 E-value=1.9e-13 Score=132.53 Aligned_cols=153 Identities=19% Similarity=0.190 Sum_probs=110.4
Q ss_pred ccEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh----------CC--eeEEEecCCc
Q 023563 51 SMVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ----------KG--RNVAVIKSNK 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~----------~g--~~i~~~~~~~ 116 (280)
.+|++++|+.+=. +..+++|+||+|++|+-+.|.||||||||+|+ |+++|++. .+ +++.|++|.+
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLl-RvlggLWp~~~G~l~k~~~~~~~~lfflPQrP 510 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLL-RVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRP 510 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHH-HHHhcccccCCCeEEecccCCCCceEEecCCC
Confidence 5899999998874 45678889999999999999999999999999 99999843 33 4577888765
Q ss_pred ccccccceeeee----------------cccccccccccCchHHHHHH-------------------------hhhhccC
Q 023563 117 DTRYGLDSIVTH----------------DGVKLPCCALTTLSSFRQKF-------------------------GSDAYDQ 155 (280)
Q Consensus 117 ~~~~~~~~v~~~----------------~~~~~~~~~~~~l~~~~~~~-------------------------a~aL~~~ 155 (280)
-- .++.+-+| +......+....+.++.++. ||-+..+
T Consensus 511 Ym--t~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~k 588 (659)
T KOG0060|consen 511 YM--TLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHK 588 (659)
T ss_pred Cc--cccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcC
Confidence 32 11111110 00001112222333333333 5668899
Q ss_pred CCEEEEeCcccHH--HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 156 VDVIGIDEAQFFE--DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 156 p~lLlLDEP~~~~--~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
|++-+|||.|++. ++-..+-+..++.|+|.|-|+|...+-. +-|.++-|+.
T Consensus 589 Pk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~k-----------fHd~~L~~~g 641 (659)
T KOG0060|consen 589 PKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWK-----------FHDYVLRMDG 641 (659)
T ss_pred CceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHh-----------hhhEEEEecC
Confidence 9999999998875 5777777777778999999999998775 7788887765
No 411
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.9e-14 Score=135.79 Aligned_cols=158 Identities=19% Similarity=0.219 Sum_probs=101.1
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc---hhCCeeEEEecCCcccc--cccceeee
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE---TQKGRNVAVIKSNKDTR--YGLDSIVT 127 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl---~~~g~~i~~~~~~~~~~--~~~~~v~~ 127 (280)
|+++|.+.+-.++.++.+.||.|-.|..|||+||||-|||||+ +.|+.- .....++.+-.|..... ..+..++.
T Consensus 265 IKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLL-kHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~ 343 (807)
T KOG0066|consen 265 IKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLL-KHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK 343 (807)
T ss_pred ceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHH-HHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHH
Confidence 8899999999899999999999999999999999999999999 766642 12233333322221100 00000110
Q ss_pred ecc----------cc------------------c-------------------------------ccccccCchHHHHHH
Q 023563 128 HDG----------VK------------------L-------------------------------PCCALTTLSSFRQKF 148 (280)
Q Consensus 128 ~~~----------~~------------------~-------------------------------~~~~~~~l~~~~~~~ 148 (280)
.+. .+ + +.....+=+.++-..
T Consensus 344 aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSL 423 (807)
T KOG0066|consen 344 ADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSL 423 (807)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhH
Confidence 000 00 0 000000111111122
Q ss_pred hhhhccCCCEEEEeCcccHHHHHHH--HHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563 149 GSDAYDQVDVIGIDEAQFFEDLYDF--CREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF 221 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~~~i~~~--l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~ 221 (280)
||||..+|-+|+|||||+.+++-.. |..+.+--.+|+++||||-.+... +|..|+.|++ ++..
T Consensus 424 ARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~----------VCtdIIHLD~qkLhy 489 (807)
T KOG0066|consen 424 ARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDS----------VCTDIIHLDNQKLHY 489 (807)
T ss_pred HHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHH----------HHHHHhhhhhhhhhh
Confidence 6789999999999999998874222 223333235799999999999986 9999999998 6543
No 412
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.41 E-value=1.8e-12 Score=114.26 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=78.0
Q ss_pred CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc-cceeeeecccccccccccCc
Q 023563 63 QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG-LDSIVTHDGVKLPCCALTTL 141 (280)
Q Consensus 63 ~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l 141 (280)
++..+-+|++|++++|++++|.||||+||||++ +.+++..+..+--.+++... .+.+ +..++.+.+.... ...+.
T Consensus 15 ~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l-~~i~~~~~la~~G~~vpa~~-~~i~~~~~i~~~~~~~d~--~~~~~ 90 (218)
T cd03286 15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLL-RTVCLAVIMAQMGMDVPAKS-MRLSLVDRIFTRIGARDD--IMKGE 90 (218)
T ss_pred CCCeEEeeeEEeecCCcEEEEECCCCCchHHHH-HHHHHHHHHHHcCCccCccc-cEeccccEEEEecCcccc--cccCc
Confidence 356789999999999999999999999999999 88877533222111222221 1111 1122222111000 01222
Q ss_pred hHHHHHH---h--hhhccCCCEEEEeCc---ccHH---HHHHH-HHHHHhhcCCEEEEEEechhHhhh
Q 023563 142 SSFRQKF---G--SDAYDQVDVIGIDEA---QFFE---DLYDF-CREAADHDGKTVIVAGLDGDYLRR 197 (280)
Q Consensus 142 ~~~~~~~---a--~aL~~~p~lLlLDEP---~~~~---~i~~~-l~~l~~~~g~tviivtHdl~~~~~ 197 (280)
+.+.... . ...+.+|+++|+||| ++.. .+... ++.+.+..+.++|++||+.+.+..
T Consensus 91 StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 91 STFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred chHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 2222211 1 123579999999999 3322 23333 566655348999999999998875
No 413
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.39 E-value=6.9e-13 Score=113.84 Aligned_cols=114 Identities=17% Similarity=0.152 Sum_probs=58.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHH---HHHHhhhhcc--
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSF---RQKFGSDAYD-- 154 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~---~~~~a~aL~~-- 154 (280)
++.|.||||+||||++ +.++-..+..+.-.+++.....-..+..++...+.... ...+...+ ..+.++++..
T Consensus 1 ~~~ltG~N~~GKst~l-~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~--~~~~~s~fs~~~~~l~~~l~~~~ 77 (185)
T smart00534 1 VVIITGPNMGGKSTYL-RQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDS--LAQGLSTFMVEMKETANILKNAT 77 (185)
T ss_pred CEEEECCCCCcHHHHH-HHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCc--hhccccHHHHHHHHHHHHHHhCC
Confidence 3679999999999999 77763221111000111111000011122221111000 01122222 2233444444
Q ss_pred CCCEEEEeCcccH------HHH-HHHHHHHHhhcCCEEEEEEechhHhh
Q 023563 155 QVDVIGIDEAQFF------EDL-YDFCREAADHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 155 ~p~lLlLDEP~~~------~~i-~~~l~~l~~~~g~tviivtHdl~~~~ 196 (280)
+|+++|+|||+.. ..+ ..+++.+.++.+.++|++||+.+...
T Consensus 78 ~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~ 126 (185)
T smart00534 78 ENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTK 126 (185)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHH
Confidence 9999999999543 233 34556665534899999999997553
No 414
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.38 E-value=1.5e-12 Score=114.35 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=68.0
Q ss_pred eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---CCeeEEEecCCccccccc-ceeeeecccccccccccCc
Q 023563 66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---KGRNVAVIKSNKDTRYGL-DSIVTHDGVKLPCCALTTL 141 (280)
Q Consensus 66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---~g~~i~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l 141 (280)
.+=+|+++.=..+.+++|.||||+|||||+ +.+..... .|.- ++.. ..+.+. ..++.+.. .......++
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlL-k~i~~~~~la~~G~~---v~a~-~~~~~~~d~i~~~l~--~~~si~~~~ 89 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYL-KQVALIVFLAHIGSF---VPAD-SATIGLVDKIFTRMS--SRESVSSGQ 89 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHH-HHHHHHHHHHhCCCe---eEcC-CcEEeeeeeeeeeeC--CccChhhcc
Confidence 454555554222379999999999999999 77764211 1111 1111 111110 00111100 000111223
Q ss_pred hHHHHHH-----hhhhccCCCEEEEeCcccHH------H-HHHHHHHHHhh--cCCEEEEEEechhHhhh
Q 023563 142 SSFRQKF-----GSDAYDQVDVIGIDEAQFFE------D-LYDFCREAADH--DGKTVIVAGLDGDYLRR 197 (280)
Q Consensus 142 ~~~~~~~-----a~aL~~~p~lLlLDEP~~~~------~-i~~~l~~l~~~--~g~tviivtHdl~~~~~ 197 (280)
+.+.... +.+++.+|.++|+|||.... . +.++++++.+. .+.++|++||+.+.+..
T Consensus 90 S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 90 SAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred chHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 3332222 45667899999999995432 2 34577777653 13589999999998864
No 415
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.38 E-value=6.5e-12 Score=110.34 Aligned_cols=57 Identities=12% Similarity=0.038 Sum_probs=42.7
Q ss_pred hhccCCCEEEEeCcccH------HHHHHHHHHHHhhcC-CEEEEEEechhHhhhccCCccccccccc--eEEEeec
Q 023563 151 DAYDQVDVIGIDEAQFF------EDLYDFCREAADHDG-KTVIVAGLDGDYLRRSFGSVIDIIPLAD--SVTKLTA 217 (280)
Q Consensus 151 aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g-~tviivtHdl~~~~~~~~~~~~ll~~aD--~i~~L~~ 217 (280)
+++.+|+++|+|||+.. ..+++.+.+++++.| .++|++||++....+ +|| +|++|.+
T Consensus 144 ~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~----------~~~~~~v~~l~~ 209 (213)
T cd03277 144 QELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN----------YHEKMTVLCVYN 209 (213)
T ss_pred HhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc----------ccCceEEEEEec
Confidence 34589999999999654 357888888876434 589999999987764 776 5566654
No 416
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.37 E-value=3.1e-12 Score=120.31 Aligned_cols=140 Identities=22% Similarity=0.254 Sum_probs=89.6
Q ss_pred eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---------CCeeEE--------EecCCcccccccceee-
Q 023563 65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---------KGRNVA--------VIKSNKDTRYGLDSIV- 126 (280)
Q Consensus 65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---------~g~~i~--------~~~~~~~~~~~~~~v~- 126 (280)
..+++|+||+|++|++++++|+|||||||++ ++|.|... +...+. .++...+..++ +..+
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttll-Rmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~-~~til 473 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLL-RMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFG-EVTIL 473 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHH-HHHHHHhhcccccccCCCCCceeccccchhhccCcccccccC-chhHH
Confidence 5699999999999999999999999999999 99998632 111111 11111111111 0011
Q ss_pred eec-------ccccccccccCc----------------hHHHHHHhhhhccCCCEEEEeCcccH------HHHHHHHHHH
Q 023563 127 THD-------GVKLPCCALTTL----------------SSFRQKFGSDAYDQVDVIGIDEAQFF------EDLYDFCREA 177 (280)
Q Consensus 127 ~~~-------~~~~~~~~~~~l----------------~~~~~~~a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l 177 (280)
.+. +.....+...++ ..-..+.|+.++..|.+++.||-.+. ..+..-|.++
T Consensus 474 ehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisel 553 (593)
T COG2401 474 EHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISEL 553 (593)
T ss_pred HHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHH
Confidence 000 000000111111 12222336788999999999998443 3477778888
Q ss_pred HhhcCCEEEEEEechhHhhhccCCccccccc-cceEEEee
Q 023563 178 ADHDGKTVIVAGLDGDYLRRSFGSVIDIIPL-ADSVTKLT 216 (280)
Q Consensus 178 ~~~~g~tviivtHdl~~~~~~~~~~~~ll~~-aD~i~~L~ 216 (280)
+++.|.|++++||..+...+ + -|.++.+.
T Consensus 554 aRe~giTlivvThrpEv~~A----------L~PD~li~vg 583 (593)
T COG2401 554 AREAGITLIVVTHRPEVGNA----------LRPDTLILVG 583 (593)
T ss_pred HHHhCCeEEEEecCHHHHhc----------cCCceeEEee
Confidence 88889999999999999886 5 67776654
No 417
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.36 E-value=1.9e-12 Score=124.59 Aligned_cols=142 Identities=14% Similarity=0.080 Sum_probs=98.2
Q ss_pred cEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---------CCeeEEEecCCcccccc
Q 023563 52 MVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---------KGRNVAVIKSNKDTRYG 121 (280)
Q Consensus 52 ~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---------~g~~i~~~~~~~~~~~~ 121 (280)
-|.++||-.-- .+..++..++|+|++|....|+||||||||+|+ |+++|++. ....+.|+||.+-- .
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLf-RILggLWPvy~g~L~~P~~~~mFYIPQRPYm--s 557 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLF-RILGGLWPVYNGLLSIPRPNNIFYIPQRPYM--S 557 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHH-HHHhccCcccCCeeecCCCcceEeccCCCcc--C
Confidence 47788887665 346789999999999999999999999999999 99999843 23346677765421 1
Q ss_pred cceeee------------eccc----ccccccccCchHHHHHH-----------------------hhhhccCCCEEEEe
Q 023563 122 LDSIVT------------HDGV----KLPCCALTTLSSFRQKF-----------------------GSDAYDQVDVIGID 162 (280)
Q Consensus 122 ~~~v~~------------~~~~----~~~~~~~~~l~~~~~~~-----------------------a~aL~~~p~lLlLD 162 (280)
.+.+-. +.+. +...+..+.+.+++++- ||-+.++|++-+||
T Consensus 558 ~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLD 637 (728)
T KOG0064|consen 558 GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLD 637 (728)
T ss_pred cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhh
Confidence 111100 0000 01112222233333222 45678999999999
Q ss_pred CcccHH--HHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563 163 EAQFFE--DLYDFCREAADHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 163 EP~~~~--~i~~~l~~l~~~~g~tviivtHdl~~~~ 196 (280)
|.|++- |+-..+-+.++..|.+.+-+||....-.
T Consensus 638 EcTsAvsidvE~~i~~~ak~~gi~llsithrpslwk 673 (728)
T KOG0064|consen 638 ECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWK 673 (728)
T ss_pred hhhcccccchHHHHHHHHHhcCceEEEeecCccHHH
Confidence 998864 6777777787778999999999998765
No 418
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.33 E-value=1.9e-12 Score=122.87 Aligned_cols=58 Identities=33% Similarity=0.326 Sum_probs=48.0
Q ss_pred hhhhccCCCEEEEeCcccHHHH------HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 149 GSDAYDQVDVIGIDEAQFFEDL------YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~~~i------~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
|.+++.+.+++++|||++.+|+ ..+++++++. +++||+|.||+....- ++|-|.++-.
T Consensus 225 aa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLavLD~----------lsD~vhI~YG 288 (591)
T COG1245 225 AAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAVLDY----------LSDFVHILYG 288 (591)
T ss_pred HHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHHHHH----------hhheeEEEec
Confidence 4468899999999999988764 4577788876 8999999999998875 7888887654
No 419
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.30 E-value=5.6e-12 Score=126.39 Aligned_cols=63 Identities=22% Similarity=0.197 Sum_probs=54.1
Q ss_pred CCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee------c-eecc
Q 023563 155 QVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT------A-RCEF 221 (280)
Q Consensus 155 ~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~------~-~i~~ 221 (280)
..-+.||||||..+ .+++.|.+|.+. |-|||++.|+++.+. .||.|+-|. . .+++
T Consensus 843 g~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~-GnTViVIEHNLdVIk-----------~AD~IIDLGPeGG~~GG~iva 910 (935)
T COG0178 843 GKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVIVIEHNLDVIK-----------TADWIIDLGPEGGDGGGEIVA 910 (935)
T ss_pred CCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecccceEe-----------ecCEEEEcCCCCCCCCceEEE
Confidence 44899999997754 367888899886 999999999999886 799999983 3 7999
Q ss_pred ccCcceee
Q 023563 222 CGKRAFFT 229 (280)
Q Consensus 222 ~g~~~~~~ 229 (280)
.|+|+++.
T Consensus 911 ~GTPeeva 918 (935)
T COG0178 911 SGTPEEVA 918 (935)
T ss_pred ecCHHHHH
Confidence 99999987
No 420
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.28 E-value=7.2e-12 Score=136.15 Aligned_cols=62 Identities=21% Similarity=0.198 Sum_probs=54.0
Q ss_pred CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee------c-eeccc
Q 023563 156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT------A-RCEFC 222 (280)
Q Consensus 156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~------~-~i~~~ 222 (280)
+.+++|||||..+ .+++.|.++.+. |.|||++.||++.+. .||.|+-|. . ++++.
T Consensus 1721 ~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~-g~tvivieH~~~~i~-----------~aD~iidlgp~gG~~GG~iva~ 1788 (1809)
T PRK00635 1721 PTLFLLDEIATSLDNQQKSALLVQLRTLVSL-GHSVIYIDHDPALLK-----------QADYLIEMGPGSGKTGGKILFS 1788 (1809)
T ss_pred CcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHH-----------hCCEEEEcCCCcccCCCEEEEE
Confidence 6899999997754 377888889876 999999999999987 599999983 3 79999
Q ss_pred cCcceee
Q 023563 223 GKRAFFT 229 (280)
Q Consensus 223 g~~~~~~ 229 (280)
|+|+++.
T Consensus 1789 Gtp~~i~ 1795 (1809)
T PRK00635 1789 GPPKDIS 1795 (1809)
T ss_pred eCHHHHh
Confidence 9999987
No 421
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=2.8e-11 Score=110.18 Aligned_cols=50 Identities=14% Similarity=0.037 Sum_probs=41.6
Q ss_pred CCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 155 QVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 155 ~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
+|+++|+|||+.. ..+.+.++++.+ +.++|++||+++... +||+++.|.+
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~~~-----------~~d~~~~l~~ 247 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQVAA-----------MADNHFLVEK 247 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHHHH-----------hcCcEEEEEE
Confidence 9999999999654 347778877754 789999999998653 8999999887
No 422
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.24 E-value=4.4e-11 Score=106.28 Aligned_cols=152 Identities=20% Similarity=0.202 Sum_probs=87.0
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccc------ccceee
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRY------GLDSIV 126 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~------~~~~v~ 126 (280)
+.++++.+.+++. +++|++++|.||||||||||..+.+.++...|..+.|+........ .++.-+
T Consensus 8 ~~~~~ld~~l~gg---------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~ 78 (230)
T PRK08533 8 LSRDELHKRLGGG---------IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDI 78 (230)
T ss_pred EEEeeeehhhCCC---------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCch
Confidence 5577777777552 8999999999999999999954788877667777777764322111 011000
Q ss_pred e----eccccc----ccc-cccCchHHHHHHhhh-hccCCCEEEEeCcccHH----------HHHHHHHHHHhhcCCEEE
Q 023563 127 T----HDGVKL----PCC-ALTTLSSFRQKFGSD-AYDQVDVIGIDEAQFFE----------DLYDFCREAADHDGKTVI 186 (280)
Q Consensus 127 ~----~~~~~~----~~~-~~~~l~~~~~~~a~a-L~~~p~lLlLDEP~~~~----------~i~~~l~~l~~~~g~tvi 186 (280)
. ...... +.. ...+......+...+ -..+|+++++|||+... +++++++.++++ |.|+
T Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~tv- 156 (230)
T PRK08533 79 NKKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSL-NKVI- 156 (230)
T ss_pred HHHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhC-CCEE-
Confidence 0 000000 000 000011122211111 12589999999996533 467777777665 7755
Q ss_pred EEEechhHhhhccCCccccccccceEEEeec
Q 023563 187 VAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 187 ivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
++||+.......+ ...+-.+||-|+.|+.
T Consensus 157 i~t~~~~~~~~~~--~~~~~~~~DgvI~L~~ 185 (230)
T PRK08533 157 ILTANPKELDESV--LTILRTAATMLIRLEV 185 (230)
T ss_pred EEEeccccccccc--ceeEEEeeeEEEEEEE
Confidence 5567766443211 1233456888888886
No 423
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.22 E-value=2.2e-11 Score=112.62 Aligned_cols=140 Identities=16% Similarity=0.095 Sum_probs=91.4
Q ss_pred eeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccc---eeeeecccccccccccCchHHHHH
Q 023563 71 ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLD---SIVTHDGVKLPCCALTTLSSFRQK 147 (280)
Q Consensus 71 isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~l~~~~~~ 147 (280)
+++.+..|+.++|+||+|||||||+ +.+.++......+..+........... .++.... ... ..-..+.+-
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll-~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~--~~~---~~~~~~~~~ 210 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFL-KSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKG--GQG---LAKVTPKDL 210 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHH-HHHHccCCccccEEEEcCccccCCCCCCEEEEEecCC--CCC---cCccCHHHH
Confidence 5678899999999999999999999 989887655555544432211111100 1111100 000 111122333
Q ss_pred HhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563 148 FGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 148 ~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~ 226 (280)
...+|-.+|++|++|||... +.+++++.+... +.+++.++|..+... ..+|+..|.. +....|.+.
T Consensus 211 l~~~Lr~~pd~ii~gE~r~~-e~~~~l~a~~~g-~~~~i~T~Ha~~~~~-----------~~~Rl~~l~~~~~~~~g~~~ 277 (308)
T TIGR02788 211 LQSCLRMRPDRIILGELRGD-EAFDFIRAVNTG-HPGSITTLHAGSPEE-----------AFEQLALMVKSSQAGLGLDF 277 (308)
T ss_pred HHHHhcCCCCeEEEeccCCH-HHHHHHHHHhcC-CCeEEEEEeCCCHHH-----------HHHHHHHHhhccccccCCCH
Confidence 34567899999999999875 567777777642 345799999999554 6899988876 777777777
Q ss_pred eee
Q 023563 227 FFT 229 (280)
Q Consensus 227 ~~~ 229 (280)
+..
T Consensus 278 ~~~ 280 (308)
T TIGR02788 278 AYI 280 (308)
T ss_pred HHH
Confidence 665
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.18 E-value=9.3e-11 Score=120.33 Aligned_cols=141 Identities=14% Similarity=0.089 Sum_probs=77.9
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCc-eEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccccc-ceeeeec
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSG-EIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGL-DSIVTHD 129 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~G-ei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~-~~v~~~~ 129 (280)
.+.++++.+-+-...-.-.+|+++..| ++++|.||||+|||||+ +.+++..+....-.+++.......+. ..++...
T Consensus 295 ~i~l~~~rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlL-K~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i 373 (771)
T TIGR01069 295 KIILENARHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTL-KTLGLLALMFQSGIPIPANEHSEIPYFEEIFADI 373 (771)
T ss_pred CEEEccccCceecCCceEeceeEeCCCceEEEEECCCCCCchHHH-HHHHHHHHHHHhCCCccCCccccccchhheeeec
Confidence 467777655332111122478889888 89999999999999999 98888632111111222222111111 1111110
Q ss_pred ccccccccccCchHHHH---HHhhhh--ccCCCEEEEeCcccH------HHH-HHHHHHHHhhcCCEEEEEEechhHhh
Q 023563 130 GVKLPCCALTTLSSFRQ---KFGSDA--YDQVDVIGIDEAQFF------EDL-YDFCREAADHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 130 ~~~~~~~~~~~l~~~~~---~~a~aL--~~~p~lLlLDEP~~~------~~i-~~~l~~l~~~~g~tviivtHdl~~~~ 196 (280)
+. ......+++.+.. +.+..+ +.+|.++|+|||... ..+ ..++..+.+. |.++|++||+.++..
T Consensus 374 ~~--~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~-g~~viitTH~~eL~~ 449 (771)
T TIGR01069 374 GD--EQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQ-NAQVLITTHYKELKA 449 (771)
T ss_pred Ch--HhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECChHHHHH
Confidence 00 0001112222221 112222 358999999999543 234 4566777664 999999999988754
No 425
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.12 E-value=7.3e-10 Score=90.71 Aligned_cols=135 Identities=18% Similarity=0.131 Sum_probs=70.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCCccccccc--------ceeeeeccccccccc-ccCchHHH-HHH
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSNKDTRYGL--------DSIVTHDGVKLPCCA-LTTLSSFR-QKF 148 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~-~~~l~~~~-~~~ 148 (280)
++.|.||+|+||||++ ..+++. ...+..+.++.......... ...... ........ ........ ...
T Consensus 1 ~~~i~G~~G~GKT~l~-~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (165)
T cd01120 1 LILVFGPTGSGKTTLA-LQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDN-LIIVFATADDPAAARLLSKAE 78 (165)
T ss_pred CeeEeCCCCCCHHHHH-HHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhcccccc-EEEEEcCCCCCcHHHHHHHHH
Confidence 4789999999999999 666554 34567777776543321000 000000 00001111 11111111 112
Q ss_pred hhhhccCCCEEEEeCcccH---------------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccC---Cccccccccc
Q 023563 149 GSDAYDQVDVIGIDEAQFF---------------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFG---SVIDIIPLAD 210 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~---------------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~---~~~~ll~~aD 210 (280)
+.+...+|+++++||++.. .+.+..+.+..++.+.++|+++|........++ ....+..+||
T Consensus 79 ~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~d 158 (165)
T cd01120 79 RLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKGDPRLTRGAQNLEDIAD 158 (165)
T ss_pred HHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccccCcccccCccceeeecc
Confidence 3455679999999999632 122233333334459999999998865543221 1122344566
Q ss_pred eEEEee
Q 023563 211 SVTKLT 216 (280)
Q Consensus 211 ~i~~L~ 216 (280)
-++.++
T Consensus 159 ~~~~l~ 164 (165)
T cd01120 159 TVIVLS 164 (165)
T ss_pred eEEEEe
Confidence 666554
No 426
>PRK13695 putative NTPase; Provisional
Probab=99.09 E-value=5.2e-10 Score=94.76 Aligned_cols=59 Identities=22% Similarity=0.213 Sum_probs=44.4
Q ss_pred hhhccCCCEEEEeCccc--H--HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563 150 SDAYDQVDVIGIDEAQF--F--EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE 220 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~--~--~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~ 220 (280)
+..+.+|++|++|||.. . ..+.+.+.++.+ .|.++|+++|+..... ++|+|..+.+ ++.
T Consensus 91 ~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~-~~~~~i~v~h~~~~~~-----------~~~~i~~~~~~~i~ 154 (174)
T PRK13695 91 ERALEEADVIIIDEIGKMELKSPKFVKAVEEVLD-SEKPVIATLHRRSVHP-----------FVQEIKSRPGGRVY 154 (174)
T ss_pred HhccCCCCEEEEECCCcchhhhHHHHHHHHHHHh-CCCeEEEEECchhhHH-----------HHHHHhccCCcEEE
Confidence 34556999999999622 2 346788888875 4999999999954432 7999999998 653
No 427
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.08 E-value=5.6e-10 Score=107.74 Aligned_cols=146 Identities=20% Similarity=0.175 Sum_probs=86.0
Q ss_pred CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCe-eEEEecCCccc-c-------------cccceeeee
Q 023563 64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGR-NVAVIKSNKDT-R-------------YGLDSIVTH 128 (280)
Q Consensus 64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~-~i~~~~~~~~~-~-------------~~~~~v~~~ 128 (280)
+..+++++ |++.+|++++|+|+||+|||||+ ++|.++..... .+....+.... . ..+..+...
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl-~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~ 222 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLM-GMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATS 222 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHH-HHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECC
Confidence 45689999 99999999999999999999999 99998754322 23332222110 0 001001000
Q ss_pred cccccccccccCc----hHHHHHHhhhhccCCCEEEEe-----------------Cc--------ccHHHHHHHHHHHHh
Q 023563 129 DGVKLPCCALTTL----SSFRQKFGSDAYDQVDVIGID-----------------EA--------QFFEDLYDFCREAAD 179 (280)
Q Consensus 129 ~~~~~~~~~~~~l----~~~~~~~a~aL~~~p~lLlLD-----------------EP--------~~~~~i~~~l~~l~~ 179 (280)
+. +....... ..+++.+. . -.+-=+|++| || ..+..+.++++++..
T Consensus 223 ~~---~~~~r~~~~~~a~~iAEyfr-~-~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~ 297 (438)
T PRK07721 223 DQ---PALMRIKGAYTATAIAEYFR-D-QGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGT 297 (438)
T ss_pred CC---CHHHHHHHHHHHHHHHHHHH-H-CCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcC
Confidence 00 00000000 00111110 0 0122233445 76 234457778888763
Q ss_pred -hcCC-----EEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 180 -HDGK-----TVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 180 -~~g~-----tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
+.|. ||++.+||+++. +||++..+.+ +++.+++.++-
T Consensus 298 ~~~GsIT~~~TVlv~~hdm~e~------------i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 298 NASGSITAFYTVLVDGDDMNEP------------IADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred CCCCCeeeEEEEEEECCCCCch------------hhhhEEEecCEEEEEeccHHHC
Confidence 2375 999999999953 9999999999 99999886543
No 428
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.01 E-value=1.5e-09 Score=96.13 Aligned_cols=139 Identities=19% Similarity=0.223 Sum_probs=77.2
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccc--------ccc--ceeeeeccc-cccc------cc
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTR--------YGL--DSIVTHDGV-KLPC------CA 137 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~--------~~~--~~v~~~~~~-~~~~------~~ 137 (280)
+++|+++.|.|++|||||||...++.+....|..+.|+....... +++ ...+..... ..+. ..
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 101 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWN 101 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccC
Confidence 789999999999999999999444454445688888776543221 110 000000000 0000 00
Q ss_pred ccCchHHHHHHhhhhc-cCCCEEEEeCcccHH------HHH---HHHHHHHhhcCCEEEEEEechhHhhhccCCcccccc
Q 023563 138 LTTLSSFRQKFGSDAY-DQVDVIGIDEAQFFE------DLY---DFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIP 207 (280)
Q Consensus 138 ~~~l~~~~~~~a~aL~-~~p~lLlLDEP~~~~------~i~---~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~ 207 (280)
..+...+.......+- .+|+++++|||+... .+. +.++.+++. |.|+++++|+..+.... ...+..
T Consensus 102 ~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~-g~tvllt~~~~~~~~~~---~~~~~~ 177 (234)
T PRK06067 102 STLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDL-GKTILITLHPYAFSEEL---LSRIRS 177 (234)
T ss_pred cchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCcCCHHH---HHHHHh
Confidence 1122233333222222 399999999996432 233 335555654 89999999976542210 011234
Q ss_pred ccceEEEeec
Q 023563 208 LADSVTKLTA 217 (280)
Q Consensus 208 ~aD~i~~L~~ 217 (280)
++|-++.|+.
T Consensus 178 l~DgvI~L~~ 187 (234)
T PRK06067 178 ICDVYLKLRA 187 (234)
T ss_pred heEEEEEEEe
Confidence 6787777765
No 429
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.00 E-value=1.4e-09 Score=94.43 Aligned_cols=107 Identities=21% Similarity=0.199 Sum_probs=65.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcchh--CCeeEEEecCCccccc-c-cceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVAVIKSNKDTRY-G-LDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ 155 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~ 155 (280)
++.|.||+||||||++ +.+.+... .+..+..+........ . ...+.+.. . -.+...+.+...++|..+
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~-v------g~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQRE-V------GLDTLSFENALKAALRQD 74 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhhhcCCcEEEEEcCCccccccCccceeeecc-c------CCCccCHHHHHHHHhcCC
Confidence 6889999999999999 76666433 2334443332211110 0 01111110 0 011233445556778889
Q ss_pred CCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563 156 VDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 156 p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~ 196 (280)
|+++++|||.....+...+ +.+.. |..++.++|..+.+.
T Consensus 75 pd~ii~gEird~e~~~~~l-~~a~~-G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRDLETIRLAL-TAAET-GHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCCHHHHHHHH-HHHHc-CCEEEEEecCCcHHH
Confidence 9999999997665554444 45554 999999999988664
No 430
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.99 E-value=8.7e-10 Score=93.54 Aligned_cols=136 Identities=15% Similarity=0.095 Sum_probs=76.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccc--------cccc--eeeeecccc-ccc--ccccC--ch--
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTR--------YGLD--SIVTHDGVK-LPC--CALTT--LS-- 142 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~--------~~~~--~v~~~~~~~-~~~--~~~~~--l~-- 142 (280)
++.|.||.|+|||||..+.+......|..+.|+.-..... .++. .+....... ... ..... ..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~ 80 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence 3679999999999999555555456677777775432211 1110 000000000 000 00000 00
Q ss_pred -HHHHHHh-hhhccCCCEEEEeCcccHH---------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccce
Q 023563 143 -SFRQKFG-SDAYDQVDVIGIDEAQFFE---------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADS 211 (280)
Q Consensus 143 -~~~~~~a-~aL~~~p~lLlLDEP~~~~---------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~ 211 (280)
.+..... .....+|+++++|||+... .+.+++..+++. |.|+|+++|+...... ......+..+||.
T Consensus 81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~-g~tvi~v~~~~~~~~~-~~~~~~~~~~aD~ 158 (187)
T cd01124 81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRF-GVTTLLTSEQSGLEGT-GFGGGDVEYLVDG 158 (187)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHC-CCEEEEEeccccCCCc-ccCcCceeEeeeE
Confidence 1122222 2245699999999996432 356677777765 9999999998875211 0111234468999
Q ss_pred EEEeec
Q 023563 212 VTKLTA 217 (280)
Q Consensus 212 i~~L~~ 217 (280)
|+.|+.
T Consensus 159 ii~l~~ 164 (187)
T cd01124 159 VIRLRL 164 (187)
T ss_pred EEEEEE
Confidence 999986
No 431
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.97 E-value=7.9e-10 Score=86.80 Aligned_cols=35 Identities=17% Similarity=-0.025 Sum_probs=32.4
Q ss_pred eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563 65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ 100 (280)
Q Consensus 65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~ 100 (280)
+.+|++++|++++|++++|+||||||||||+ +++.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl-~~l~ 36 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELA-LELI 36 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHH-HHhh
Confidence 5789999999999999999999999999999 7654
No 432
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=6.3e-09 Score=94.46 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=25.3
Q ss_pred eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563 67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ 100 (280)
Q Consensus 67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~ 100 (280)
.+++.++++.+| +.+|+|||||||||++ ..|.
T Consensus 11 ~~~~~~~~~~~~-~~~i~G~NGsGKS~ll-~Ai~ 42 (270)
T cd03242 11 NYAELELEFEPG-VTVLVGENAQGKTNLL-EAIS 42 (270)
T ss_pred CcceeEEecCCC-eEEEECCCCCCHHHHH-HHHH
Confidence 345667888876 7899999999999999 5443
No 433
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.95 E-value=2.8e-09 Score=109.73 Aligned_cols=137 Identities=19% Similarity=0.180 Sum_probs=73.3
Q ss_pred eeeEee-CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccccc-ceeeeecccccccccccCchHHHHH-
Q 023563 71 ASVSSP-SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGL-DSIVTHDGVKLPCCALTTLSSFRQK- 147 (280)
Q Consensus 71 isl~i~-~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~l~~~~~~- 147 (280)
.++.+. .+.++.|.|||++||||+| +.++...+..+--.+++.......++ ..++...+.. . ....+++.+...
T Consensus 319 ndi~l~~~~~~~iITGpN~gGKTt~l-ktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~-~-si~~~lStfS~~m 395 (782)
T PRK00409 319 KDISLGFDKTVLVITGPNTGGKTVTL-KTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDE-Q-SIEQSLSTFSGHM 395 (782)
T ss_pred ceeEECCCceEEEEECCCCCCcHHHH-HHHHHHHHHHHhCCCcccCCCccccccceEEEecCCc-c-chhhchhHHHHHH
Confidence 344444 4578999999999999999 77765432211111222221111111 1222211110 0 001122222211
Q ss_pred --Hhhhh--ccCCCEEEEeCcccH------HHHH-HHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563 148 --FGSDA--YDQVDVIGIDEAQFF------EDLY-DFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT 216 (280)
Q Consensus 148 --~a~aL--~~~p~lLlLDEP~~~------~~i~-~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~ 216 (280)
....+ +.+|.++|+|||... ..+. .++..+.+. |.++|++||+.+.+.. .+++..++.
T Consensus 396 ~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~-~~~vIitTH~~el~~~----------~~~~~~v~~ 464 (782)
T PRK00409 396 TNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKR-GAKIIATTHYKELKAL----------MYNREGVEN 464 (782)
T ss_pred HHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHC-CCEEEEECChHHHHHH----------HhcCCCeEE
Confidence 11111 269999999999543 2343 456666654 9999999999998864 566655554
Q ss_pred ceecc
Q 023563 217 ARCEF 221 (280)
Q Consensus 217 ~~i~~ 221 (280)
..+.+
T Consensus 465 ~~~~~ 469 (782)
T PRK00409 465 ASVEF 469 (782)
T ss_pred EEEEE
Confidence 44444
No 434
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.90 E-value=2.5e-09 Score=112.39 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=99.8
Q ss_pred eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-----CCeeEEEecCCccc---ccccceeeeeccc-----
Q 023563 65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-----KGRNVAVIKSNKDT---RYGLDSIVTHDGV----- 131 (280)
Q Consensus 65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-----~g~~i~~~~~~~~~---~~~~~~v~~~~~~----- 131 (280)
..+|+|+|.-+++|+.+.++||.|||||||+ +.++|-.. .| .+.|-..+... +..+.+..+++-.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttll-kal~g~~~~~~~~~~-~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLL-KALAGKLDNFLKSSG-EITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHH-HHHhCCCcccccCCC-ceeECCCcccccccCceEEeccccccccceeE
Confidence 4699999999999999999999999999999 88888421 11 23332221110 0011111111100
Q ss_pred ----------------ccccc--------------cccCchHHHHHH-------------------hhhhccCCCEEEEe
Q 023563 132 ----------------KLPCC--------------ALTTLSSFRQKF-------------------GSDAYDQVDVIGID 162 (280)
Q Consensus 132 ----------------~~~~~--------------~~~~l~~~~~~~-------------------a~aL~~~p~lLlLD 162 (280)
..+.. ...++++-++.. |-.++.+++++.+|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 00000 001111111100 12588999999999
Q ss_pred CcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 163 EAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 163 EP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|++.++ ++.+.|+++++..+.|++++-|.... +++++-|.|++|.+ .++++|+.++..
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~---------~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSP---------EIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCCh---------HHHHhhhheeeeeccceEEeccHHHHH
Confidence 996654 57888888888778888888876542 44678999999999 999999988764
No 435
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.85 E-value=1.6e-08 Score=105.15 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=73.7
Q ss_pred eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc-cceeeeecccccccccccCchH
Q 023563 65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG-LDSIVTHDGVKLPCCALTTLSS 143 (280)
Q Consensus 65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~ 143 (280)
..+=+|+++. +.+.++.|.|||++||||+| +.++...+..+--.+++... ...+ +..++.+.+..... ..+.+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~l-r~v~l~~ilAq~G~~VPa~~-a~i~~~d~I~triga~d~i--~~g~ST 669 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYM-RQVALIVLLAQIGSFVPAES-ARIGIVDRIFTRIGASDDL--ASGRST 669 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHH-HHHHHHHHHHhcCCceeccc-eEecccCeeeeccCccccc--ccCccc
Confidence 4567788888 77789999999999999999 77655432211111222222 1111 12233322211110 122222
Q ss_pred HHHHH---hhh--hccCCCEEEEeCc---ccHHH----HHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563 144 FRQKF---GSD--AYDQVDVIGIDEA---QFFED----LYDFCREAADHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 144 ~~~~~---a~a--L~~~p~lLlLDEP---~~~~~----i~~~l~~l~~~~g~tviivtHdl~~~~ 196 (280)
|.... +.. -+.++.++|+||| |+..+ .+.+++.+.+..|.++|++||+.+...
T Consensus 670 F~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~ 734 (854)
T PRK05399 670 FMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTE 734 (854)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHH
Confidence 22211 222 2569999999999 65544 466777777654689999999965543
No 436
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.82 E-value=9.5e-09 Score=87.96 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=34.0
Q ss_pred cCCCEEEEeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563 154 DQVDVIGIDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 154 ~~p~lLlLDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~ 196 (280)
..--+.|||||.+ +..++..|+++++. |.-+||+||.+=...
T Consensus 145 ~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPiLlA 192 (233)
T COG3910 145 NGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPILLA 192 (233)
T ss_pred ccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChhhee
Confidence 5778999999944 34678888899886 999999999987554
No 437
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.80 E-value=3e-08 Score=87.39 Aligned_cols=142 Identities=13% Similarity=0.156 Sum_probs=71.8
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccc------cccceeeee---cccc--cc--------
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTR------YGLDSIVTH---DGVK--LP-------- 134 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~------~~~~~v~~~---~~~~--~~-------- 134 (280)
-+++|+++.|.||+|+|||||....+......|..+.|+.-..... ..++..++. .... .+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~ 95 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVIIDALMKEKED 95 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEEEcccccccc
Confidence 3889999999999999999999433332233566666665322110 001111110 0000 00
Q ss_pred cc--cccCchHHHHHHh-----------hhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCC
Q 023563 135 CC--ALTTLSSFRQKFG-----------SDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGS 201 (280)
Q Consensus 135 ~~--~~~~l~~~~~~~a-----------~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~ 201 (280)
.+ ...+..++..+.. +.++-.+..+++|||....++...+.++.++.|+|+|+++|........+.
T Consensus 96 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~- 174 (229)
T TIGR03881 96 EWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFG- 174 (229)
T ss_pred ccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcc-
Confidence 00 0112233332221 122333444444555433344444555545569999999996542211111
Q ss_pred ccccccccceEEEeec
Q 023563 202 VIDIIPLADSVTKLTA 217 (280)
Q Consensus 202 ~~~ll~~aD~i~~L~~ 217 (280)
..+-.+||.|+.|+.
T Consensus 175 -~~~~~l~D~vI~L~~ 189 (229)
T TIGR03881 175 -FGIEHVADGIIRFRK 189 (229)
T ss_pred -cceEEEEeEEEEEEE
Confidence 233457999999886
No 438
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.80 E-value=8.8e-08 Score=83.79 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=35.7
Q ss_pred ccCCCEEEEeCccc------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 153 YDQVDVIGIDEAQF------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 153 ~~~p~lLlLDEP~~------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
....+++|||||.. +..+.++|+++.+ +.-+|++||+..... .||+.+.+..
T Consensus 156 ~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii~Th~~~~~~-----------~a~~~~~v~~ 213 (220)
T PF02463_consen 156 YKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFIITTHNPEMFE-----------DADKLIGVTM 213 (220)
T ss_dssp CS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEEE-S-HHHHT-----------T-SEEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccc--ccccccccccccccc-----------cccccccccc
Confidence 46889999999944 3457778887754 578999999998886 6888877653
No 439
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.80 E-value=2.7e-08 Score=88.72 Aligned_cols=129 Identities=20% Similarity=0.196 Sum_probs=65.7
Q ss_pred eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHH
Q 023563 65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSF 144 (280)
Q Consensus 65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 144 (280)
..+-+|+.+.-....++.|.|||.+||||++ |.++-..+..+--.+++.....-..+..++.+.+... ....+.+.+
T Consensus 30 ~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~l-k~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d--~~~~~~S~F 106 (235)
T PF00488_consen 30 KFVPNDIELSNNKSRIIIITGPNMSGKSTFL-KQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDD--SIESGLSTF 106 (235)
T ss_dssp SC--EEEEESSSSSSEEEEESSTTSSHHHHH-HHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES-----SSTTSSSHH
T ss_pred ceecceeecCCCceeEEEEeCCCccchhhHH-HHHHHHhhhhhcCceeeecccccccccEEEeeccccc--ccccccccH
Confidence 3456676666555569999999999999999 7665432211110122222111111112222211110 111233333
Q ss_pred HHHH---hh--hhccCCCEEEEeCc---ccHHH----HHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563 145 RQKF---GS--DAYDQVDVIGIDEA---QFFED----LYDFCREAADHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 145 ~~~~---a~--aL~~~p~lLlLDEP---~~~~~----i~~~l~~l~~~~g~tviivtHdl~~~~ 196 (280)
.... .. ..+.+-.++|+||. |+..+ ...+++.+.++.+..++++||+.+...
T Consensus 107 ~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 107 MAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp HHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred HHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 3322 11 12457889999999 44433 456667776634888999999998654
No 440
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.78 E-value=3.1e-08 Score=85.01 Aligned_cols=119 Identities=14% Similarity=0.042 Sum_probs=65.9
Q ss_pred eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHh
Q 023563 70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFG 149 (280)
Q Consensus 70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a 149 (280)
=+.+.+++|+.++|+||||||||||+ +.+.++......+..+..............+... .........-..+.+...
T Consensus 17 ~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ 94 (186)
T cd01130 17 YLWLAVEARKNILISGGTGSGKTTLL-NALLAFIPPDERIITIEDTAELQLPHPNWVRLVT-RPGNVEGSGEVTMADLLR 94 (186)
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEECCccccCCCCCCEEEEEE-ecCCCCCCCccCHHHHHH
Confidence 34577899999999999999999999 9998875544444333222111111000111000 000000001111222222
Q ss_pred hhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCE-EEEEEechh
Q 023563 150 SDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKT-VIVAGLDGD 193 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~t-viivtHdl~ 193 (280)
.++-.+|++++++|-.... .++.++.. . .|.. ++.+-|--+
T Consensus 95 ~~lR~~pd~i~igEir~~e-a~~~~~a~-~-tGh~g~~~T~Ha~s 136 (186)
T cd01130 95 SALRMRPDRIIVGEVRGGE-ALDLLQAM-N-TGHPGGMTTIHANS 136 (186)
T ss_pred HHhccCCCEEEEEccCcHH-HHHHHHHH-h-cCCCCceeeecCCC
Confidence 3455799999999997654 45555543 4 3777 777777444
No 441
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.70 E-value=8.9e-08 Score=93.18 Aligned_cols=135 Identities=15% Similarity=0.086 Sum_probs=79.9
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccc------ccceeeeecccccccccccCchHHHHH
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRY------GLDSIVTHDGVKLPCCALTTLSSFRQK 147 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~l~~~~~~ 147 (280)
=+++|+++.|.|++|+|||||++.++..+...|.++.|+........ .++...+ ... .....++..+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~--~l~--~~~e~~~~~I~~~ 165 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEP--NLY--VLSETNWEQICAN 165 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChH--HeE--EcCCCCHHHHHHH
Confidence 48999999999999999999995554555555667777754322110 0110000 000 0111223333322
Q ss_pred HhhhhccCCCEEEEeCccc------------HH---HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceE
Q 023563 148 FGSDAYDQVDVIGIDEAQF------------FE---DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSV 212 (280)
Q Consensus 148 ~a~aL~~~p~lLlLDEP~~------------~~---~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i 212 (280)
. --.+|+++++|.-++ .. ++...|.+++++.|.|+++++|....- .+.+...+-.++|.|
T Consensus 166 i---~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg--~~aG~~~le~lvD~V 240 (454)
T TIGR00416 166 I---EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEG--SIAGPKVLEHMVDTV 240 (454)
T ss_pred H---HhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCC--ccCCcccEeeeceEE
Confidence 1 124899999997632 11 234456777777899999999976531 112222234579999
Q ss_pred EEeec
Q 023563 213 TKLTA 217 (280)
Q Consensus 213 ~~L~~ 217 (280)
+.|+.
T Consensus 241 I~Le~ 245 (454)
T TIGR00416 241 LYFEG 245 (454)
T ss_pred EEEec
Confidence 99875
No 442
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.65 E-value=3.2e-08 Score=103.41 Aligned_cols=69 Identities=20% Similarity=0.219 Sum_probs=59.9
Q ss_pred hhhhccCC--CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe-----
Q 023563 149 GSDAYDQV--DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL----- 215 (280)
Q Consensus 149 a~aL~~~p--~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L----- 215 (280)
|++|+.+| +++|||||++.+ .++++|++++++ |.|||+|+||++++. .||+|++|
T Consensus 501 A~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~-G~TVIvVeH~~~~i~-----------~aD~vi~LgpgaG 568 (943)
T PRK00349 501 ATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDL-GNTLIVVEHDEDTIR-----------AADYIVDIGPGAG 568 (943)
T ss_pred HHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-----------hCCEEEEeccccC
Confidence 56788886 999999997654 588999999775 999999999999875 69999999
Q ss_pred -ec-eeccccCcceee
Q 023563 216 -TA-RCEFCGKRAFFT 229 (280)
Q Consensus 216 -~~-~i~~~g~~~~~~ 229 (280)
++ ++++.|+++++.
T Consensus 569 ~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 569 VHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCCEEeeccCHHHHh
Confidence 88 999999998875
No 443
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.64 E-value=1.1e-07 Score=89.47 Aligned_cols=112 Identities=19% Similarity=0.181 Sum_probs=66.8
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcchh--CCeeEEEecCCccccc-ccceeeeecccccccccccCchHHHHHHhhhh
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVAVIKSNKDTRY-GLDSIVTHDGVKLPCCALTTLSSFRQKFGSDA 152 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL 152 (280)
.++.++.|.||+||||||++ +.+.+... .+..+..+........ .....+.+.. .. .....+.+....+|
T Consensus 120 ~~~g~ili~G~tGSGKTT~l-~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~e-----vg-~~~~~~~~~l~~~l 192 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTL-ASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQRE-----VG-LDTLSFANALRAAL 192 (343)
T ss_pred hcCcEEEEECCCCCCHHHHH-HHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccc-----cC-CCCcCHHHHHHHhh
Confidence 56789999999999999999 77766432 2345544433222111 0001111100 00 11123445555678
Q ss_pred ccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563 153 YDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 153 ~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~ 196 (280)
-++|++|++||+.-.......+. .+. .|..++.+.|-.+...
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~-aa~-tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALT-AAE-TGHLVFGTLHTNSAAQ 234 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHH-HHH-cCCcEEEEEcCCCHHH
Confidence 89999999999975544433343 444 4999999999866553
No 444
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=3.7e-08 Score=102.77 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=59.5
Q ss_pred hhhhccCC--CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe-----
Q 023563 149 GSDAYDQV--DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL----- 215 (280)
Q Consensus 149 a~aL~~~p--~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L----- 215 (280)
|++|+.+| +++|||||++.+ .++++|++++++ |.|||+|+||++++. +||+|++|
T Consensus 499 A~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~-G~TVIvVeHd~~~i~-----------~aD~vi~LgpgaG 566 (924)
T TIGR00630 499 ATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDL-GNTVIVVEHDEETIR-----------AADYVIDIGPGAG 566 (924)
T ss_pred HHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHh-----------hCCEEEEeccccc
Confidence 56788775 899999997654 588999999876 999999999999875 79999999
Q ss_pred -ec-eeccccCcceee
Q 023563 216 -TA-RCEFCGKRAFFT 229 (280)
Q Consensus 216 -~~-~i~~~g~~~~~~ 229 (280)
++ ++++.|+++++.
T Consensus 567 ~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 567 IHGGEVVASGTPEEIL 582 (924)
T ss_pred CCCCEEeeccCHHHHh
Confidence 77 899999998875
No 445
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.63 E-value=1.5e-07 Score=89.42 Aligned_cols=147 Identities=20% Similarity=0.152 Sum_probs=87.5
Q ss_pred EEeCC-eeeeEeeeeEeeCce-----EEEEEcCCCCcHHHHHHHHHhcchh-------CCeeEEEecCCcccccccc--e
Q 023563 60 FSLQN-RNLHSEASVSSPSGE-----IHVIVGPMFAGKTTTLLRRIQAETQ-------KGRNVAVIKSNKDTRYGLD--S 124 (280)
Q Consensus 60 ~~y~~-~~vl~~isl~i~~Ge-----i~~liGpNGsGKSTLl~~~l~gl~~-------~g~~i~~~~~~~~~~~~~~--~ 124 (280)
+.|.+ +.-+-++.|.|..|+ ++..+|.||.|||||+ ++++|... .--+++|.+|.....+... .
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi-~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ 421 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFI-RMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQ 421 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHH-HHHhcCCCCCccCcccccceeccccccCccccchHHH
Confidence 44543 556788889999885 7899999999999999 99998532 1225666666544322110 0
Q ss_pred eee--------ecccccccccccCchH------------HHHHHhh--hhccCCCEEEEeCcccHHH------HHHHHHH
Q 023563 125 IVT--------HDGVKLPCCALTTLSS------------FRQKFGS--DAYDQVDVIGIDEAQFFED------LYDFCRE 176 (280)
Q Consensus 125 v~~--------~~~~~~~~~~~~~l~~------------~~~~~a~--aL~~~p~lLlLDEP~~~~~------i~~~l~~ 176 (280)
++. +.....+.+....+++ -+++.|. .|-..+++.+.|||...++ .-..+++
T Consensus 422 ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikR 501 (592)
T KOG0063|consen 422 LLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKR 501 (592)
T ss_pred HHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHH
Confidence 000 0000000000011111 1222233 3456899999999954432 2233444
Q ss_pred HHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 177 AADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 177 l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
..=+..+|-.+|.||.-.+.- +|||+++...
T Consensus 502 filhakktafvVEhdfImaTY----------ladrvivf~G 532 (592)
T KOG0063|consen 502 FILHAKKTAFVVEHDFIMATY----------LADRVIVFEG 532 (592)
T ss_pred HHHhccchhhhhhhHHHHHHh----------hcceeEEEec
Confidence 433348899999999988875 7999988654
No 446
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.59 E-value=2.2e-08 Score=96.76 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=30.0
Q ss_pred eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHH
Q 023563 66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLR 97 (280)
Q Consensus 66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~ 97 (280)
.+|++||++|++||+++|+||||||||||+ +
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLL-r 50 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEIL-A 50 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHH-h
Confidence 589999999999999999999999999999 7
No 447
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.57 E-value=5.1e-07 Score=81.45 Aligned_cols=152 Identities=19% Similarity=0.147 Sum_probs=87.6
Q ss_pred eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-CeeEEEecCCccc-----cc-----cccee-e------e
Q 023563 66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-GRNVAVIKSNKDT-----RY-----GLDSI-V------T 127 (280)
Q Consensus 66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g~~i~~~~~~~~~-----~~-----~~~~v-~------~ 127 (280)
..|+++.--+.+|+++.|.||+|+|||||+..++..+... |..+.|+.-.... +. ++..- . .
T Consensus 18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 97 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLHLPDTVFIYT 97 (271)
T ss_pred ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCcccCCcccccc
Confidence 4567776779999999999999999999994443433344 7777777543211 00 00000 0 0
Q ss_pred ------------ecccc--cccccccCchHHHHHHhhh-hccCCCEEEEeCcccH--------------HHHHHHHHHHH
Q 023563 128 ------------HDGVK--LPCCALTTLSSFRQKFGSD-AYDQVDVIGIDEAQFF--------------EDLYDFCREAA 178 (280)
Q Consensus 128 ------------~~~~~--~~~~~~~~l~~~~~~~a~a-L~~~p~lLlLDEP~~~--------------~~i~~~l~~l~ 178 (280)
..... .......++..+....... .-.+|+++++|..+.. .+++..|++++
T Consensus 98 ~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la 177 (271)
T cd01122 98 LEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFA 177 (271)
T ss_pred HHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHH
Confidence 00000 0000011223333322111 1248999999998221 13556678888
Q ss_pred hhcCCEEEEEEechhHhhh------------ccCCccccccccceEEEeec
Q 023563 179 DHDGKTVIVAGLDGDYLRR------------SFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 179 ~~~g~tviivtHdl~~~~~------------~~~~~~~ll~~aD~i~~L~~ 217 (280)
++.|+||++++|-...... -+.+...+-..||-|+.|..
T Consensus 178 ~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r 228 (271)
T cd01122 178 TEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALER 228 (271)
T ss_pred HHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEe
Confidence 8889999999985432211 13334456678899998876
No 448
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.55 E-value=3.3e-07 Score=87.26 Aligned_cols=51 Identities=25% Similarity=0.167 Sum_probs=45.0
Q ss_pred ccEEEcCceEEeCC-eeeeE-----------eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 51 SMVSPRPPLFSLQN-RNLHS-----------EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 51 ~~l~~~~ls~~y~~-~~vl~-----------~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.-+.++||++.|.+ +.+|+ |+++.|.+|+.++|+||.|+|||||+ +.|...
T Consensus 129 ~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~-~~i~~~ 191 (415)
T TIGR00767 129 NRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLL-QKIAQA 191 (415)
T ss_pred CCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHH-HHHHHh
Confidence 35899999999954 56897 99999999999999999999999999 766653
No 449
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.54 E-value=5.8e-07 Score=70.47 Aligned_cols=26 Identities=46% Similarity=0.630 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
.|..+.|+||+|+||||++ +.++...
T Consensus 1 ~~~~~~l~G~~G~GKTtl~-~~l~~~~ 26 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLA-RALAREL 26 (148)
T ss_pred CCCEEEEECCCCCcHHHHH-HHHHhcc
Confidence 3678999999999999999 7776643
No 450
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.53 E-value=4.9e-07 Score=85.83 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=78.7
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccc------ccceeeeecccccccccccCchHHHHH
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRY------GLDSIVTHDGVKLPCCALTTLSSFRQK 147 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~l~~~~~~ 147 (280)
=+.+|+++.|.|++|+|||||++.+...+...+.++.|+........ .++... +... .....++..+.+.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~--~~l~--l~~e~~le~I~~~ 153 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGIST--ENLY--LLAETNLEDILAS 153 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCc--ccEE--EEccCcHHHHHHH
Confidence 38899999999999999999994444444445667777654321110 011000 0100 0111233333332
Q ss_pred HhhhhccCCCEEEEeCcccH------------H---HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceE
Q 023563 148 FGSDAYDQVDVIGIDEAQFF------------E---DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSV 212 (280)
Q Consensus 148 ~a~aL~~~p~lLlLDEP~~~------------~---~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i 212 (280)
. -..+|+++++|+-++. . ++...|.+++++.|+++++++|-...-. +.+-..+-.++|.|
T Consensus 154 i---~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~--~aG~~~leh~vD~V 228 (372)
T cd01121 154 I---EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGS--IAGPKVLEHMVDTV 228 (372)
T ss_pred H---HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCc--ccCcccchhhceEE
Confidence 2 1358999999997321 2 2345566777778999999999544211 22223344578988
Q ss_pred EEeec
Q 023563 213 TKLTA 217 (280)
Q Consensus 213 ~~L~~ 217 (280)
+.++.
T Consensus 229 i~le~ 233 (372)
T cd01121 229 LYFEG 233 (372)
T ss_pred EEEEc
Confidence 88865
No 451
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.47 E-value=4e-07 Score=89.33 Aligned_cols=140 Identities=11% Similarity=0.079 Sum_probs=80.6
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHh-cchhCCeeEEEecCCccc---c---cccceeee----ecccc----------c
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQ-AETQKGRNVAVIKSNKDT---R---YGLDSIVT----HDGVK----------L 133 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~-gl~~~g~~i~~~~~~~~~---~---~~~~~v~~----~~~~~----------~ 133 (280)
+++|.++.|.||+|||||||.+..+. |....|.+..|+.-.... . ..++..++ ..... .
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~~~ 97 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDPEGQ 97 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchhccc
Confidence 78999999999999999999954443 444435665555432111 0 00111110 00000 0
Q ss_pred ccccccCchHHHHHHhhhhc-cCCCEEEEe--Cc---------ccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCC
Q 023563 134 PCCALTTLSSFRQKFGSDAY-DQVDVIGID--EA---------QFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGS 201 (280)
Q Consensus 134 ~~~~~~~l~~~~~~~a~aL~-~~p~lLlLD--EP---------~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~ 201 (280)
......++..+.++...++- .+++.+++| -+ ..+..++++++.+++. |+|+|+++|+.+..... .
T Consensus 98 ~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~~-g~TvLLtsh~~~~~~~~-~- 174 (484)
T TIGR02655 98 DVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQI-GVTTVMTTERIEEYGPI-A- 174 (484)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHHC-CCEEEEEecCccccccc-c-
Confidence 01122345555555544432 378888888 22 2345677888888764 99999999998753210 0
Q ss_pred cccc-ccccceEEEeec
Q 023563 202 VIDI-IPLADSVTKLTA 217 (280)
Q Consensus 202 ~~~l-l~~aD~i~~L~~ 217 (280)
-..+ -.+||.|+.|+.
T Consensus 175 ~~~~~e~laDgVI~L~~ 191 (484)
T TIGR02655 175 RYGVEEFVSDNVVILRN 191 (484)
T ss_pred cCCceeEeeeeEEEEEE
Confidence 0011 347999999986
No 452
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=98.45 E-value=9.2e-07 Score=91.94 Aligned_cols=127 Identities=14% Similarity=0.153 Sum_probs=70.6
Q ss_pred eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc-cceeeeecccccccccccCchH
Q 023563 65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG-LDSIVTHDGVKLPCCALTTLSS 143 (280)
Q Consensus 65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~l~~ 143 (280)
..+=+|+++. ..+.++.|.|||.+||||+| |.++-+.+..+--.+++... ...+ +..++.+.+..... ..+.+.
T Consensus 580 ~~VpNdi~l~-~~~~~~iITGPNmgGKSt~l-rqvali~imAq~G~~VPA~~-a~i~~~D~Iftrig~~d~i--~~g~ST 654 (840)
T TIGR01070 580 PFVPNDLEMA-HNRRMLLITGPNMGGKSTYM-RQTALIALLAQIGSFVPAES-AELPLFDRIFTRIGASDDL--ASGRST 654 (840)
T ss_pred CeEeeeeecC-CCccEEEEECCCCCCchHHH-HHHHHHHHHHhcCCCccchh-eEeccccEEEEecCcccch--hcCcch
Confidence 3456677776 44568999999999999999 76654332221111223222 1222 22333332211110 122222
Q ss_pred HHHHH---hh--hhccCCCEEEEeCc---ccHHH----HHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563 144 FRQKF---GS--DAYDQVDVIGIDEA---QFFED----LYDFCREAADHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 144 ~~~~~---a~--aL~~~p~lLlLDEP---~~~~~----i~~~l~~l~~~~g~tviivtHdl~~~~ 196 (280)
|.... +. .-+.++.++|+||+ |+..+ .+.++..+.+..|..++++||..+...
T Consensus 655 F~~Em~e~a~IL~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~ 719 (840)
T TIGR01070 655 FMVEMTEAANILHNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTA 719 (840)
T ss_pred HHHHHHHHHHHHhhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHH
Confidence 22211 11 13578999999999 55443 344555666535889999999987664
No 453
>PRK09183 transposase/IS protein; Provisional
Probab=98.44 E-value=2.6e-07 Score=83.54 Aligned_cols=44 Identities=25% Similarity=0.209 Sum_probs=35.0
Q ss_pred eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEe
Q 023563 67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVI 112 (280)
Q Consensus 67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~ 112 (280)
.|.+++| +++|+.+.|+||+|+|||+|+ ..++.. ...|..+.++
T Consensus 92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa-~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 92 SLRSLSF-IERNENIVLLGPSGVGKTHLA-IALGYEAVRAGIKVRFT 136 (259)
T ss_pred HHhcCCc-hhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHcCCeEEEE
Confidence 4778888 999999999999999999999 777543 3355565554
No 454
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.44 E-value=3.4e-06 Score=87.73 Aligned_cols=70 Identities=14% Similarity=0.070 Sum_probs=52.2
Q ss_pred hccCCCEEEEeCccc-------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecccc
Q 023563 152 AYDQVDVIGIDEAQF-------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 152 L~~~p~lLlLDEP~~-------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g 223 (280)
+..+|.++++|||.. ...+.+.++++++. |.+++++||+++.+.+ -+....++..|++.++|.+ ++...+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~-~~~vil~Tq~~~d~~~-s~~a~~i~~~~~t~i~L~n~~a~~~~ 726 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA-NCAVVLATQSISDAER-SGIIDVLKESCPTKICLPNGAAREPG 726 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHhc-CchHHHHHhcCCeEEECCCccccccc
Confidence 467999999999943 33577888888765 9999999999998853 1233345568999999987 654433
No 455
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.40 E-value=5.4e-07 Score=87.24 Aligned_cols=38 Identities=21% Similarity=0.099 Sum_probs=35.0
Q ss_pred CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
+..+++++ |++.+|++++|+|+||+|||||+ ++|.+..
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl-~~I~~~~ 187 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLL-GMIARNT 187 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHH-HHHhCCC
Confidence 46789999 99999999999999999999999 9998864
No 456
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.40 E-value=6.8e-07 Score=87.30 Aligned_cols=49 Identities=24% Similarity=0.440 Sum_probs=38.6
Q ss_pred eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--hCC-eeEEEecCCc
Q 023563 67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--QKG-RNVAVIKSNK 116 (280)
Q Consensus 67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--~~g-~~i~~~~~~~ 116 (280)
++++.++.+++|.+++|+||||+||||++ ..|++.. ..| .++.++..+.
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTi-aKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTT-AKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHH-HHHHHHHHHhcCCCeEEEEeCCc
Confidence 56677888899999999999999999999 6677653 233 4788777654
No 457
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.39 E-value=1.2e-06 Score=76.59 Aligned_cols=140 Identities=16% Similarity=0.214 Sum_probs=73.9
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeee------cccccccccccCchHHH---
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTH------DGVKLPCCALTTLSSFR--- 145 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~------~~~~~~~~~~~~l~~~~--- 145 (280)
+++|+++.|.|++|||||||.+.++......|.++.|+.-.......+..+... ..... ....+..++.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 93 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIV--FEPMDFNEQGRAI 93 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEE--EeCCCHHHHHHHH
Confidence 789999999999999999999554444445577777774322110000000000 00000 0001112221
Q ss_pred HHHhhhhccCCCEEEEeCcccH---------------HHH---HHHHHHHHhhcCCEEEEEEechhHhhh----ccCCcc
Q 023563 146 QKFGSDAYDQVDVIGIDEAQFF---------------EDL---YDFCREAADHDGKTVIVAGLDGDYLRR----SFGSVI 203 (280)
Q Consensus 146 ~~~a~aL~~~p~lLlLDEP~~~---------------~~i---~~~l~~l~~~~g~tviivtHdl~~~~~----~~~~~~ 203 (280)
......+-.+++++++|-.+.. .++ +..|+.++++.++++|++.|-...... ..++ .
T Consensus 94 ~~~~~~~~~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g-~ 172 (218)
T cd01394 94 QETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGG-H 172 (218)
T ss_pred HHHHHHHhcCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCC-c
Confidence 1221112235999999987321 122 334567777789999999985422110 0000 1
Q ss_pred ccccccceEEEeec
Q 023563 204 DIIPLADSVTKLTA 217 (280)
Q Consensus 204 ~ll~~aD~i~~L~~ 217 (280)
.+-.++|.++.|+.
T Consensus 173 ~~~~~~d~~i~l~~ 186 (218)
T cd01394 173 TLEHWSKVILRLEK 186 (218)
T ss_pred chhcceeEEEEEEE
Confidence 12346788888875
No 458
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.39 E-value=1.8e-06 Score=75.92 Aligned_cols=141 Identities=19% Similarity=0.178 Sum_probs=75.1
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccc--------cc--ceeeeecccccccccc----c
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRY--------GL--DSIVTHDGVKLPCCAL----T 139 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~--------~~--~~v~~~~~~~~~~~~~----~ 139 (280)
-+++|+++.|.|+.|+|||++....+......|..+.|+.-...... +. .....+ ......... .
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ 90 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDK-SLYIVRLDPSDFKT 90 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhC-CeEEEecCHHHHHh
Confidence 37899999999999999999985555444445777777754332210 00 000000 000000000 0
Q ss_pred CchHHHHHHhhhh-ccCCCEEEEeCcc-----------cHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCcccccc
Q 023563 140 TLSSFRQKFGSDA-YDQVDVIGIDEAQ-----------FFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIP 207 (280)
Q Consensus 140 ~l~~~~~~~a~aL-~~~p~lLlLDEP~-----------~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~ 207 (280)
.+..+.......+ -..++++++|=.+ .+..+.++++.+++. |.|+++++|....-.. -.....+-.
T Consensus 91 ~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~~-~~tvll~s~~~~~~~~-~~~~~~~~~ 168 (224)
T TIGR03880 91 SLNRIKNELPILIKELGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRET-GVTTILTSEADKTNVF-ASKYGLIEY 168 (224)
T ss_pred hHHHHHHHHHHHHHHhCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHhC-CCEEEEEEcccCCCCC-ccCCCceEE
Confidence 0112222111111 1368888899532 123467777777664 9999999996421000 000111345
Q ss_pred ccceEEEeec
Q 023563 208 LADSVTKLTA 217 (280)
Q Consensus 208 ~aD~i~~L~~ 217 (280)
+||.|++|+.
T Consensus 169 l~D~vI~L~~ 178 (224)
T TIGR03880 169 LADGVIILKY 178 (224)
T ss_pred EEeEEEEEee
Confidence 8999999964
No 459
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.38 E-value=1.7e-06 Score=84.14 Aligned_cols=136 Identities=18% Similarity=0.159 Sum_probs=75.6
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc---ccee-eeecccccccccccCchHHHHHHh
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG---LDSI-VTHDGVKLPCCALTTLSSFRQKFG 149 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~---~~~v-~~~~~~~~~~~~~~~l~~~~~~~a 149 (280)
-+++|+++.|.|+.|+|||||++.+.......+.++.|+........- ...+ +..+... .....++..+.+..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~--~~~e~~l~~i~~~i- 152 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLY--LLAETNLEAILATI- 152 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEE--EeCCCCHHHHHHHH-
Confidence 478999999999999999999944444333456677776543221100 0000 0000000 01112233333322
Q ss_pred hhhccCCCEEEEeCcccH------------H---HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEE
Q 023563 150 SDAYDQVDVIGIDEAQFF------------E---DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTK 214 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~~------------~---~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~ 214 (280)
--.+|+++++|+.++. . ++...|.+++++.|.++++++|-...-. +.+-..+-.++|.++.
T Consensus 153 --~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~~--~ag~~~lehlvD~Vi~ 228 (446)
T PRK11823 153 --EEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEGA--IAGPRVLEHMVDTVLY 228 (446)
T ss_pred --HhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCCC--cCCcchhhhhCeEEEE
Confidence 1248999999998421 1 2344567777778999999999533210 1111122346888887
Q ss_pred ee
Q 023563 215 LT 216 (280)
Q Consensus 215 L~ 216 (280)
+.
T Consensus 229 le 230 (446)
T PRK11823 229 FE 230 (446)
T ss_pred EE
Confidence 75
No 460
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.38 E-value=2.7e-06 Score=82.05 Aligned_cols=140 Identities=13% Similarity=0.106 Sum_probs=78.0
Q ss_pred cEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCe-eEEEecCCccc-ccccceeeee
Q 023563 52 MVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGR-NVAVIKSNKDT-RYGLDSIVTH 128 (280)
Q Consensus 52 ~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~-~i~~~~~~~~~-~~~~~~v~~~ 128 (280)
.++-+.++..|. +..+++++ |.+.+|+.++|+|+||+|||||+ ++|++...... .+..+.+.... ...+......
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl-~~Ia~~~~~~~gvI~~iGerg~ev~e~~~~~l~~ 207 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLL-GMIAKNAKADINVISLVGERGREVKDFIRKELGE 207 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHH-HHHhccCCCCeEEEEeCCCCcccHHHHHHHHhhh
Confidence 466777887775 45688885 99999999999999999999999 98988754332 33333333111 0000000101
Q ss_pred ccccccc--ccccCch---HH-HHHHhhhh------ccCCCEEEEeCcccHHHHHHHHHHHHhh---cCCEEEEEEechh
Q 023563 129 DGVKLPC--CALTTLS---SF-RQKFGSDA------YDQVDVIGIDEAQFFEDLYDFCREAADH---DGKTVIVAGLDGD 193 (280)
Q Consensus 129 ~~~~~~~--~~~~~l~---~~-~~~~a~aL------~~~p~lLlLDEP~~~~~i~~~l~~l~~~---~g~tviivtHdl~ 193 (280)
.+..... ....+.. .+ ....|.++ -.++-+|++|+||...+-...+..+..+ .|.+..+.+|...
T Consensus 208 ~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~G~~~~~~s~l~~ 287 (432)
T PRK06793 208 EGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIGGKTLLMESYMKK 287 (432)
T ss_pred cccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCCCeeeeeeccchh
Confidence 1100000 0000110 11 11111111 2689999999998776644444333221 3788888888433
No 461
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.35 E-value=8.3e-07 Score=77.36 Aligned_cols=35 Identities=6% Similarity=-0.060 Sum_probs=26.0
Q ss_pred HHHHhhhhccCCCEEEEeCcc-----cHH------HHHHHHHHHHh
Q 023563 145 RQKFGSDAYDQVDVIGIDEAQ-----FFE------DLYDFCREAAD 179 (280)
Q Consensus 145 ~~~~a~aL~~~p~lLlLDEP~-----~~~------~i~~~l~~l~~ 179 (280)
....+++++.+|+++++|||+ +.+ .+.+.++++++
T Consensus 160 f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 160 FLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 334477899999999999998 654 46677776653
No 462
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.32 E-value=9.9e-07 Score=83.64 Aligned_cols=49 Identities=24% Similarity=0.416 Sum_probs=38.0
Q ss_pred eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-h-hCC-eeEEEecCC
Q 023563 66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-T-QKG-RNVAVIKSN 115 (280)
Q Consensus 66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~-~~g-~~i~~~~~~ 115 (280)
.++++.++.+++|++++|+||||+||||++ ..|++. . ..| .++.++..+
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTti-akLA~~~~~~~G~~~V~lit~D 176 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTT-AKLAARCVMRFGASKVALLTTD 176 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHH-HHHHHHHHHhcCCCeEEEEecc
Confidence 467788889999999999999999999999 555553 2 234 577777644
No 463
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.32 E-value=2e-06 Score=68.24 Aligned_cols=104 Identities=22% Similarity=0.097 Sum_probs=57.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ 155 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~ 155 (280)
.+..+.|.||.|+||||++ +.+..... .+..+.++........ ..... .................+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~-~~i~~~~~~~~~~v~~~~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~~~~ 84 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA-RAIANELFRPGAPFLYLNASDLLEG---------LVVAE---LFGHFLVRLLFELAEKAK 84 (151)
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHhhcCCCCeEEEehhhhhhh---------hHHHH---HhhhhhHhHHHHhhccCC
Confidence 5778999999999999999 66665332 2223332221110000 00000 000000111123344568
Q ss_pred CCEEEEeCccc-----HHHHHHHHHHHHh----hcCCEEEEEEechh
Q 023563 156 VDVIGIDEAQF-----FEDLYDFCREAAD----HDGKTVIVAGLDGD 193 (280)
Q Consensus 156 p~lLlLDEP~~-----~~~i~~~l~~l~~----~~g~tviivtHdl~ 193 (280)
+.+|++||... ...+.+.+..... ..+..+|+++++..
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 99999999953 2345666666543 13788999998765
No 464
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.30 E-value=7.9e-07 Score=62.96 Aligned_cols=31 Identities=32% Similarity=0.537 Sum_probs=24.1
Q ss_pred eeeeEeeC-ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 70 EASVSSPS-GEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 70 ~isl~i~~-Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+-++++.+ |.++.|.|||||||||++ -.+.-
T Consensus 14 ~~~~~~~~~g~~tli~G~nGsGKSTll-DAi~~ 45 (62)
T PF13555_consen 14 GETIDFDPRGDVTLITGPNGSGKSTLL-DAIQT 45 (62)
T ss_pred CeEEeecCCCcEEEEECCCCCCHHHHH-HHHHH
Confidence 34567765 569999999999999999 55543
No 465
>PRK13764 ATPase; Provisional
Probab=98.29 E-value=7.9e-06 Score=81.79 Aligned_cols=137 Identities=16% Similarity=0.061 Sum_probs=76.8
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhc
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAY 153 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~ 153 (280)
..++.-+.|.||.||||||++ +.+.... ..++.+..+......... ..+.|.. .. ..+...+. ...|.
T Consensus 254 ~~~~~~ILIsG~TGSGKTTll-~AL~~~i~~~~riV~TiEDp~El~~~-~~i~q~~-----~~-~~~~~~~~---~~lLR 322 (602)
T PRK13764 254 EERAEGILIAGAPGAGKSTFA-QALAEFYADMGKIVKTMESPRDLQVP-PEITQYS-----KL-EGSMEETA---DILLL 322 (602)
T ss_pred HhcCCEEEEECCCCCCHHHHH-HHHHHHHhhCCCEEEEECCCccccCC-CcceEEe-----ec-cccHHHHH---HHHHh
Confidence 345667899999999999999 7776653 344455344322221111 0111110 00 01111111 12366
Q ss_pred cCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEe--chhHhhhccC---CccccccccceEEEeec-ee--ccccC
Q 023563 154 DQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGL--DGDYLRRSFG---SVIDIIPLADSVTKLTA-RC--EFCGK 224 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtH--dl~~~~~~~~---~~~~ll~~aD~i~~L~~-~i--~~~g~ 224 (280)
.+|+++++||.--... ++++..++.. |..++-+-| +...+.+.+. .+..+..++|+|+++++ ++ +++.+
T Consensus 323 ~rPD~IivGEiRd~Et-~~~~~~l~~a-g~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I~~v~~~~ 399 (602)
T PRK13764 323 VRPDYTIYDEMRKTED-FKIFADMRLA-GVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEVSKVYDLE 399 (602)
T ss_pred hCCCEEEECCCCCHHH-HHHHHHHHHc-CCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEEEEEEeee
Confidence 8999999999966554 4555555543 777888889 1111111111 12223348999999999 77 55555
No 466
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.27 E-value=1.3e-05 Score=71.23 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=42.2
Q ss_pred ccCCCEEEEeCccc------------HHHHHHHHHHHHhhcCCEEEEEEechhHhh------hccCCccccccccceEEE
Q 023563 153 YDQVDVIGIDEAQF------------FEDLYDFCREAADHDGKTVIVAGLDGDYLR------RSFGSVIDIIPLADSVTK 214 (280)
Q Consensus 153 ~~~p~lLlLDEP~~------------~~~i~~~l~~l~~~~g~tviivtHdl~~~~------~~~~~~~~ll~~aD~i~~ 214 (280)
..+|+++++| |.. ...+++.|.+++++.|.+||+++|...-.. ....+..-+..-++-++.
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~~~~~~~~~~~rGssal~~~~r~~~~ 187 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGSAKDGDTQEAARGASALVDGARWVRA 187 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcccccCcccccccCcHHHHhcccceEEE
Confidence 5799999999 632 124677888888777999999999875332 123334444444555555
Q ss_pred eec
Q 023563 215 LTA 217 (280)
Q Consensus 215 L~~ 217 (280)
|..
T Consensus 188 l~~ 190 (239)
T cd01125 188 LTR 190 (239)
T ss_pred Eee
Confidence 543
No 467
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.25 E-value=1.1e-05 Score=77.23 Aligned_cols=148 Identities=20% Similarity=0.210 Sum_probs=86.9
Q ss_pred ceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHh-cc--h--hCCeeEEEecCCcc-cccccce-------
Q 023563 58 PLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ-AE--T--QKGRNVAVIKSNKD-TRYGLDS------- 124 (280)
Q Consensus 58 ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~-gl--~--~~g~~i~~~~~~~~-~~~~~~~------- 124 (280)
+++...+...+.+ +-|++| ++.|+|.+--|||||| +.|. |. + -+|+..-.-.+..- .+..-+.
T Consensus 227 ve~~LP~~g~v~G--MGIp~G-vTlIvGGGyHGKSTLL-~Ale~GVYnHipGDGRE~VVT~~~avkirAEDGR~V~~vDI 302 (448)
T PF09818_consen 227 VEIELPNGGTVTG--MGIPKG-VTLIVGGGYHGKSTLL-EALERGVYNHIPGDGREFVVTDPDAVKIRAEDGRSVEGVDI 302 (448)
T ss_pred EEEECCCCCEEEE--EeeCCc-EEEEECCCCccHHHHH-HHHHhcccCCCCCCCceEEEECCCceEEEecCCceEeCccc
Confidence 4444433333444 569999 9999999999999999 6664 43 1 14444322221110 0100000
Q ss_pred --eee-----ecccccccccccCchHHHHHHhhhhccCCCEEEEeCcccHH---------------------HHHHHHHH
Q 023563 125 --IVT-----HDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFE---------------------DLYDFCRE 176 (280)
Q Consensus 125 --v~~-----~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~---------------------~i~~~l~~ 176 (280)
++. .+...+......+....+...-.||-...++||+||=+++. -+.+.++.
T Consensus 303 SpFI~~LP~g~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~ 382 (448)
T PF09818_consen 303 SPFINNLPGGKDTTCFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRS 382 (448)
T ss_pred hHHHhhCCCCCCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHH
Confidence 000 00011111112233444444445777899999999985431 16778888
Q ss_pred HHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-ee
Q 023563 177 AADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RC 219 (280)
Q Consensus 177 l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i 219 (280)
+.+++|.+.|+|.=-.. +.+.+||+|++|++ +.
T Consensus 383 l~~~~GvStIlV~Ggsg----------dy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 383 LYEKLGVSTILVVGGSG----------DYFDVADRVIMMDEYRP 416 (448)
T ss_pred HHHHcCceEEEEeccch----------hhHhhCCEEEEecCccc
Confidence 98888999888874444 44569999999999 64
No 468
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.24 E-value=1.7e-06 Score=83.74 Aligned_cols=52 Identities=13% Similarity=0.028 Sum_probs=46.2
Q ss_pred ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563 51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ 104 (280)
Q Consensus 51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~ 104 (280)
+.++.+++++.|. +..+++.++ +|.+|++++|+||||||||||+ ++|+++..
T Consensus 138 ~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL-~~Ia~l~~ 190 (450)
T PRK06002 138 PAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLL-AMLARADA 190 (450)
T ss_pred CCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHH-HHHhCCCC
Confidence 3689999999994 578899885 9999999999999999999999 99998743
No 469
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.24 E-value=4e-06 Score=72.72 Aligned_cols=118 Identities=15% Similarity=0.135 Sum_probs=63.8
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeee------ccc-ccccccccCchHHHHH
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTH------DGV-KLPCCALTTLSSFRQK 147 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~------~~~-~~~~~~~~~l~~~~~~ 147 (280)
+++|+++.|.||+|||||||.+..+......|..+.|+.-.......+..+... ... ........+.......
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQK 88 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHH
Confidence 689999999999999999999554444444567777776542110000000000 000 0000111111112222
Q ss_pred Hhhhhc-cCCCEEEEeCccc--H-----------HH---HHHHHHHHHhhcCCEEEEEEech
Q 023563 148 FGSDAY-DQVDVIGIDEAQF--F-----------ED---LYDFCREAADHDGKTVIVAGLDG 192 (280)
Q Consensus 148 ~a~aL~-~~p~lLlLDEP~~--~-----------~~---i~~~l~~l~~~~g~tviivtHdl 192 (280)
....+. .+|+++++|--++ + .. ++..|.+++++.|.++|++.|-.
T Consensus 89 l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~ 150 (209)
T TIGR02237 89 TSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVY 150 (209)
T ss_pred HHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccE
Confidence 221122 2799999999732 1 02 23346677777899999998843
No 470
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=98.24 E-value=6.8e-06 Score=72.73 Aligned_cols=144 Identities=19% Similarity=0.111 Sum_probs=83.6
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-CeeEEEecCCccccccc-------ceeee---eccc-----------
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-GRNVAVIKSNKDTRYGL-------DSIVT---HDGV----------- 131 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g~~i~~~~~~~~~~~~~-------~~v~~---~~~~----------- 131 (280)
-+++|+++.|.|+.|+||||++..++...... |..+.|+.-......-. ..+.. ....
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLSDEDWERLAE 88 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHH
Confidence 37899999999999999999995555555444 77777776433211000 00000 0000
Q ss_pred ----------ccccccccCchHHHHHHhhh-hccCCCEEEEeCccc----------H---HHHHHHHHHHHhhcCCEEEE
Q 023563 132 ----------KLPCCALTTLSSFRQKFGSD-AYDQVDVIGIDEAQF----------F---EDLYDFCREAADHDGKTVIV 187 (280)
Q Consensus 132 ----------~~~~~~~~~l~~~~~~~a~a-L~~~p~lLlLDEP~~----------~---~~i~~~l~~l~~~~g~tvii 187 (280)
.........+.++..+.... .-.+|+++++|=-+. . .++...|++++++.|.++++
T Consensus 89 ~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~ 168 (242)
T cd00984 89 AIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIA 168 (242)
T ss_pred HHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 00000011233333332211 123899999995411 1 13677788888888999999
Q ss_pred EEechhHhh---------hccCCccccccccceEEEeec
Q 023563 188 AGLDGDYLR---------RSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 188 vtHdl~~~~---------~~~~~~~~ll~~aD~i~~L~~ 217 (280)
++|-..... .-++++..+...||-++.|..
T Consensus 169 ~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~ 207 (242)
T cd00984 169 LSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYR 207 (242)
T ss_pred ecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEec
Confidence 999543221 123444556678999998887
No 471
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.23 E-value=1.1e-06 Score=69.89 Aligned_cols=113 Identities=22% Similarity=0.299 Sum_probs=58.0
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhc-chh-----CCeeEEEecCCccc-cccc-ceeeeecccccccccccCchHHHHH
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQA-ETQ-----KGRNVAVIKSNKDT-RYGL-DSIVTHDGVKLPCCALTTLSSFRQK 147 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~g-l~~-----~g~~i~~~~~~~~~-~~~~-~~v~~~~~~~~~~~~~~~l~~~~~~ 147 (280)
+.+.++.|.||.|+||||++ +.+.. +.. ...++.++.-.... ...+ ..+...... +.........+.+.
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLI-KRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGL--PLKSRQTSDELRSL 78 (131)
T ss_dssp -----EEEEE-TTSSHHHHH-HHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT---SSSSTS-HHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHH-HHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCc--cccccCCHHHHHHH
Confidence 35678999999999999999 44443 211 13343333211111 0000 011111010 00001223344444
Q ss_pred HhhhhccCC-CEEEEeCccc--HHHHHHHHHHHHhhcCCEEEEEEec
Q 023563 148 FGSDAYDQV-DVIGIDEAQF--FEDLYDFCREAADHDGKTVIVAGLD 191 (280)
Q Consensus 148 ~a~aL~~~p-~lLlLDEP~~--~~~i~~~l~~l~~~~g~tviivtHd 191 (280)
....+-... .+|++||... ...+++.|+.+.++.+.++|+++++
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 433443343 5999999944 3568888999988778999999987
No 472
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=98.23 E-value=9.6e-06 Score=69.13 Aligned_cols=118 Identities=22% Similarity=0.250 Sum_probs=56.5
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcc----hh------CCeeEEEecCCccc---ccccceeeeec----cccc-c--
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAE----TQ------KGRNVAVIKSNKDT---RYGLDSIVTHD----GVKL-P-- 134 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl----~~------~g~~i~~~~~~~~~---~~~~~~v~~~~----~~~~-~-- 134 (280)
+++|+++.|.||.|+||||++..++..+ .+ .+..+.|+..+... ...+..+.+.. ...+ .
T Consensus 29 ~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~ 108 (193)
T PF13481_consen 29 LPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLS 108 (193)
T ss_dssp E-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH-
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecc
Confidence 6799999999999999999993333322 22 34456666543321 00000000000 0000 0
Q ss_pred ---cccc------c-CchHHHHHHhhhhc--cCCCEEEEe--------Cccc---HHHHHHHHHHHHhhcCCEEEEEEec
Q 023563 135 ---CCAL------T-TLSSFRQKFGSDAY--DQVDVIGID--------EAQF---FEDLYDFCREAADHDGKTVIVAGLD 191 (280)
Q Consensus 135 ---~~~~------~-~l~~~~~~~a~aL~--~~p~lLlLD--------EP~~---~~~i~~~l~~l~~~~g~tviivtHd 191 (280)
.... . ......++....+. .+|+++++| .+.. ..+++..+++++++.|.+|+++.|-
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 188 (193)
T PF13481_consen 109 NWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVILVHHT 188 (193)
T ss_dssp -E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEEEEEE
T ss_pred ccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 0000 0 02222333322332 479999999 3322 2368888899988889999999885
Q ss_pred h
Q 023563 192 G 192 (280)
Q Consensus 192 l 192 (280)
-
T Consensus 189 ~ 189 (193)
T PF13481_consen 189 N 189 (193)
T ss_dssp -
T ss_pred C
Confidence 3
No 473
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.21 E-value=3.9e-06 Score=73.93 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=62.7
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCccc-ccccceeeeecc---------cc-ccccc
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNKDT-RYGLDSIVTHDG---------VK-LPCCA 137 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~~~-~~~~~~v~~~~~---------~~-~~~~~ 137 (280)
+++|+++.|.||+|||||||+..++...... +..+.|+...... ...+..+.+... .. .....
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence 7899999999999999999993333222211 2455565433211 000100100000 00 00001
Q ss_pred ccCchHHHHHHhhhh-cc-CCCEEEEeCcccH------------------HHHHHHHHHHHhhcCCEEEEEEechh
Q 023563 138 LTTLSSFRQKFGSDA-YD-QVDVIGIDEAQFF------------------EDLYDFCREAADHDGKTVIVAGLDGD 193 (280)
Q Consensus 138 ~~~l~~~~~~~a~aL-~~-~p~lLlLDEP~~~------------------~~i~~~l~~l~~~~g~tviivtHdl~ 193 (280)
..++.......-..+ -. +++++++|--++. .++...|++++++++.+||++.|-..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~~ 171 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVTA 171 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEee
Confidence 111112222211111 23 8999999998421 12456677788888999999987554
No 474
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.20 E-value=8.2e-06 Score=77.18 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=61.9
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcchh----CCeeEEEecCCccccc-cc----ceeeeecccccccccccCchHHHH
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQ----KGRNVAVIKSNKDTRY-GL----DSIVTHDGVKLPCCALTTLSSFRQ 146 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~----~g~~i~~~~~~~~~~~-~~----~~v~~~~~~~~~~~~~~~l~~~~~ 146 (280)
++|..++|+||+||||||++ +.+.+... .++.+..+........ .. ..+.|. .. ..+...+..
T Consensus 132 ~~~glilI~GpTGSGKTTtL-~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~-~v------~~~~~~~~~ 203 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLL-AAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQS-EI------PRHLNNFAA 203 (358)
T ss_pred ccCCEEEEECCCCCCHHHHH-HHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeee-ec------cccccCHHH
Confidence 57899999999999999999 88877642 2334443322221111 00 111111 10 011122333
Q ss_pred HHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhH
Q 023563 147 KFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDY 194 (280)
Q Consensus 147 ~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~ 194 (280)
-.-.+|=.+|+++++.|---...+...++.. . .|..|+-+-|-.+.
T Consensus 204 ~l~~aLR~~Pd~i~vGEiRd~et~~~al~aa-~-tGh~v~tTlHa~~~ 249 (358)
T TIGR02524 204 GVRNALRRKPHAILVGEARDAETISAALEAA-L-TGHPVYTTLHSSGV 249 (358)
T ss_pred HHHHHhccCCCEEeeeeeCCHHHHHHHHHHH-H-cCCcEEEeeccCCH
Confidence 2223566899999999976555444444433 3 38888877785443
No 475
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.20 E-value=1.6e-05 Score=82.73 Aligned_cols=65 Identities=17% Similarity=0.118 Sum_probs=47.0
Q ss_pred hhccCCCEEEEeCcc-------cHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 151 DAYDQVDVIGIDEAQ-------FFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 151 aL~~~p~lLlLDEP~-------~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
.+..+|.++++|||. +...+.+.++.+++. |..++++||+++.+... .....|++-|..-++|-+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~-~~~~i~~TQ~~~d~~~s-~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKL-NTFVIFATQSVEDASKS-AISDTLVQQTATQIFLPN 709 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHhC-hhHHHHHHhCCeEEEcCC
Confidence 356799999999993 234577788888765 99999999999988652 334455666766555544
No 476
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.18 E-value=1e-05 Score=75.39 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=31.5
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCC
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSN 115 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~ 115 (280)
-++|++++|+||||+||||++ ..|++. ...|.++.++..+
T Consensus 111 ~~~~~vi~lvGpnGsGKTTt~-~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 111 EKKPFVILVVGVNGVGKTTTI-GKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCCeEEEEECCCCCcHHHHH-HHHHHHHHhcCCeEEEEecC
Confidence 367899999999999999999 666664 4566777776544
No 477
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.17 E-value=2.5e-05 Score=81.65 Aligned_cols=65 Identities=18% Similarity=0.091 Sum_probs=47.2
Q ss_pred hhhccCCCEEEEeCccc-------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563 150 SDAYDQVDVIGIDEAQF-------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT 216 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~-------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~ 216 (280)
+++..+|+++++|||.. +..+.+.++.+++. |.+++++||+++.+.+. +....+++.|+..++|.
T Consensus 682 ~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~-g~~vil~TQs~~d~~~s-~i~~~ilen~~t~I~Lp 753 (852)
T PRK13891 682 RALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKA-NCLVLMATQSLSDAANS-GILDVIVESTATKIFLP 753 (852)
T ss_pred HHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHhhC-chHHHHHHcCCcceecC
Confidence 35678999999999933 34577888888775 99999999999988752 22334556666655553
No 478
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.15 E-value=1.6e-06 Score=83.67 Aligned_cols=39 Identities=21% Similarity=0.107 Sum_probs=35.7
Q ss_pred CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563 64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ 104 (280)
Q Consensus 64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~ 104 (280)
+..+++++ |+|.+|++++|+||||+|||||+ ++|.|+..
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl-~~I~g~~~ 180 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLL-GMITRYTQ 180 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHH-HHHhcccC
Confidence 46799999 99999999999999999999999 99998643
No 479
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.14 E-value=1.3e-05 Score=70.40 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=64.2
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeee--cccc--cccccccCchH---HHHH
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTH--DGVK--LPCCALTTLSS---FRQK 147 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~--~~~~--~~~~~~~~l~~---~~~~ 147 (280)
+++|+++.|.||+|+|||||...++......+.++.|+.-.......+..+... .... .......+..+ ..+.
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 99 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRK 99 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHH
Confidence 689999999999999999999555544445577777775541000000000000 0000 00000111212 1222
Q ss_pred HhhhhccCCCEEEEeCccc--H-------------HHH---HHHHHHHHhhcCCEEEEEEech
Q 023563 148 FGSDAYDQVDVIGIDEAQF--F-------------EDL---YDFCREAADHDGKTVIVAGLDG 192 (280)
Q Consensus 148 ~a~aL~~~p~lLlLDEP~~--~-------------~~i---~~~l~~l~~~~g~tviivtHdl 192 (280)
....+..+++++++|--++ + ..+ +..|.++++++|.++|++.|-.
T Consensus 100 ~~~~~~~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~ 162 (225)
T PRK09361 100 AEKLAKENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVY 162 (225)
T ss_pred HHHHHHhcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccce
Confidence 2211226999999999731 0 112 2336667777899999998843
No 480
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.14 E-value=8.3e-06 Score=78.52 Aligned_cols=40 Identities=28% Similarity=0.466 Sum_probs=29.7
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchh---CCeeEEEecCC
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---KGRNVAVIKSN 115 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---~g~~i~~~~~~ 115 (280)
+++|++++|+||||+||||++ +.|++... .+..++++..+
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtl-akLA~~~~~~~~~~~v~~i~~d 230 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTT-AKLAARAVIRHGADKVALLTTD 230 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHH-HHHHHHHHHhcCCCeEEEEecC
Confidence 578999999999999999999 77777422 23455555443
No 481
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.13 E-value=6.3e-06 Score=88.75 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=68.2
Q ss_pred eeeEeeCceEEEEEcCCCCcHHHHHHHHHhc-chhC-CeeEEEecCCcccccccceeeee-------------ccccccc
Q 023563 71 ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA-ETQK-GRNVAVIKSNKDTRYGLDSIVTH-------------DGVKLPC 135 (280)
Q Consensus 71 isl~i~~Gei~~liGpNGsGKSTLl~~~l~g-l~~~-g~~i~~~~~~~~~~~~~~~v~~~-------------~~~~~~~ 135 (280)
+++...+++++||+|++|+|||||+ +.+.+ +... ...+ ++.. ....... ...+. .......
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA-~~l~~~l~~~F~g~v-fv~~-~~v~~~~-~~~~~~~~~~~~~~~~l~~~~l~~i 275 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIA-RALFSRLSRQFQSSV-FIDR-AFISKSM-EIYSSANPDDYNMKLHLQRAFLSEI 275 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHH-HHHHHHHhhcCCeEE-Eeec-cccccch-hhcccccccccchhHHHHHHHHHHH
Confidence 4677889999999999999999999 77754 2211 1111 2110 0000000 00000 0000000
Q ss_pred ccccCc--hHHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHh--hcCCEEEEEEechhHhhhccCCccccccccce
Q 023563 136 CALTTL--SSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAAD--HDGKTVIVAGLDGDYLRRSFGSVIDIIPLADS 211 (280)
Q Consensus 136 ~~~~~l--~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~--~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~ 211 (280)
+...++ ... ......+..++-+|+||+..... .++.+....+ ..|.+||++|||.+.+.. .-+|+
T Consensus 276 l~~~~~~~~~~-~~~~~~L~~krvLLVLDdv~~~~-~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~---------~~~~~ 344 (1153)
T PLN03210 276 LDKKDIKIYHL-GAMEERLKHRKVLIFIDDLDDQD-VLDALAGQTQWFGSGSRIIVITKDKHFLRA---------HGIDH 344 (1153)
T ss_pred hCCCCcccCCH-HHHHHHHhCCeEEEEEeCCCCHH-HHHHHHhhCccCCCCcEEEEEeCcHHHHHh---------cCCCe
Confidence 000010 000 11112345677788999985443 3455544332 238899999999998864 12677
Q ss_pred EEEee
Q 023563 212 VTKLT 216 (280)
Q Consensus 212 i~~L~ 216 (280)
++.+.
T Consensus 345 ~~~v~ 349 (1153)
T PLN03210 345 IYEVC 349 (1153)
T ss_pred EEEec
Confidence 76654
No 482
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.12 E-value=8.7e-06 Score=73.32 Aligned_cols=31 Identities=35% Similarity=0.367 Sum_probs=26.9
Q ss_pred eeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 71 ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 71 isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.=+.+.+|+.++|+||+|+|||||+ +.+.+.
T Consensus 9 ~~~~i~~Gqr~~I~G~~G~GKTTLl-r~I~n~ 39 (249)
T cd01128 9 LFAPIGKGQRGLIVAPPKAGKTTLL-QSIANA 39 (249)
T ss_pred eecccCCCCEEEEECCCCCCHHHHH-HHHHhc
Confidence 3368999999999999999999999 777664
No 483
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.12 E-value=2.1e-06 Score=74.71 Aligned_cols=27 Identities=41% Similarity=0.421 Sum_probs=24.6
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
++|++++|+||||||||||+ +.|.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~-~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVA-RKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHH-HHHHHHh
Confidence 68999999999999999999 8888754
No 484
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.11 E-value=7.7e-06 Score=74.48 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=40.4
Q ss_pred EEEcCceEEeCC--eeeeEeeeeEee-------CceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCC
Q 023563 53 VSPRPPLFSLQN--RNLHSEASVSSP-------SGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSN 115 (280)
Q Consensus 53 l~~~~ls~~y~~--~~vl~~isl~i~-------~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~ 115 (280)
+.+++.++.|.. +.+++++++.++ +|++++|+||||+||||++ +.+++. ...+..++++..+
T Consensus 41 i~f~~~~~~~~~vl~~v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~-~~l~~~l~~~~~~v~~i~~D 112 (270)
T PRK06731 41 VKFENATMITEEVIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTL-AKMAWQFHGKKKTVGFITTD 112 (270)
T ss_pred EEecCCCccccHHHHHHhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHH-HHHHHHHHHcCCeEEEEecC
Confidence 444444444332 234555555554 5689999999999999999 777664 3345677766543
No 485
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=98.11 E-value=3.2e-05 Score=70.22 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=61.5
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHh-cchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhcc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQ-AETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYD 154 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~-gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~ 154 (280)
.++.++.|.||+||||||++ +.+. .+...+..+..+........ ..+.+.. . . ...+ ..+.+....+|=+
T Consensus 78 ~~~GlilisG~tGSGKTT~l-~all~~i~~~~~~iitiEdp~E~~~--~~~~q~~-v-~---~~~~-~~~~~~l~~~lR~ 148 (264)
T cd01129 78 KPHGIILVTGPTGSGKTTTL-YSALSELNTPEKNIITVEDPVEYQI--PGINQVQ-V-N---EKAG-LTFARGLRAILRQ 148 (264)
T ss_pred cCCCEEEEECCCCCcHHHHH-HHHHhhhCCCCCeEEEECCCceecC--CCceEEE-e-C---CcCC-cCHHHHHHHHhcc
Confidence 45569999999999999999 6554 43334455555543322211 1111110 0 0 0011 1223333345667
Q ss_pred CCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhH
Q 023563 155 QVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDY 194 (280)
Q Consensus 155 ~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~ 194 (280)
+||+++++|..........++.. .. |.-++-+.|--+-
T Consensus 149 ~PD~i~vgEiR~~e~a~~~~~aa-~t-Gh~v~tTlHa~~~ 186 (264)
T cd01129 149 DPDIIMVGEIRDAETAEIAVQAA-LT-GHLVLSTLHTNDA 186 (264)
T ss_pred CCCEEEeccCCCHHHHHHHHHHH-Hc-CCcEEEEeccCCH
Confidence 99999999997766555555444 33 8777777775443
No 486
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.11 E-value=5.6e-06 Score=84.65 Aligned_cols=48 Identities=25% Similarity=0.462 Sum_probs=38.8
Q ss_pred eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--hCC-eeEEEecCC
Q 023563 67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--QKG-RNVAVIKSN 115 (280)
Q Consensus 67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--~~g-~~i~~~~~~ 115 (280)
++++.++.+++|++++|+||||+||||++ ..|++.. ..| +++.++..+
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTi-aKLA~~~~~~~G~kkV~lit~D 224 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTT-AKLAARCVAREGADQLALLTTD 224 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHH-HHHHhhHHHHcCCCeEEEecCc
Confidence 57788888989999999999999999999 6677653 344 578777654
No 487
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.09 E-value=1.8e-05 Score=69.23 Aligned_cols=120 Identities=18% Similarity=0.142 Sum_probs=64.2
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhCC------eeEEEecCCcccc-cccceeeeecc----cccccc---cccC
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG------RNVAVIKSNKDTR-YGLDSIVTHDG----VKLPCC---ALTT 140 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g------~~i~~~~~~~~~~-~~~~~v~~~~~----~~~~~~---~~~~ 140 (280)
+++|+++.|.||+|+|||||++.++......+ ..+.|+....... ..+..+.+... .....+ ...+
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCCC
Confidence 78999999999999999999944333333333 5555655432210 01100101000 000000 0112
Q ss_pred chHHHHHHhhhh-----ccCCCEEEEeCcccH---------------H---HHHHHHHHHHhhcCCEEEEEEechhHh
Q 023563 141 LSSFRQKFGSDA-----YDQVDVIGIDEAQFF---------------E---DLYDFCREAADHDGKTVIVAGLDGDYL 195 (280)
Q Consensus 141 l~~~~~~~a~aL-----~~~p~lLlLDEP~~~---------------~---~i~~~l~~l~~~~g~tviivtHdl~~~ 195 (280)
..++.... ..+ -.+++++++|--+.. . ++...|++++++++.+||++.|-....
T Consensus 96 ~~~~~~~l-~~~~~~~~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~~~ 172 (226)
T cd01393 96 GEQQLEIV-EELERIMSSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAKV 172 (226)
T ss_pred HHHHHHHH-HHHHHHhhcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEeeec
Confidence 22222211 111 248899999985210 1 244557777777899999999865543
No 488
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.05 E-value=2.3e-05 Score=62.05 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 023563 81 HVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 81 ~~liGpNGsGKSTLl~~~l~gl 102 (280)
+.|.||.|+||||++ +.++..
T Consensus 1 ill~G~~G~GKT~l~-~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA-RALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHH-HHHHHH
T ss_pred CEEECcCCCCeeHHH-HHHHhh
Confidence 468999999999999 877764
No 489
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.05 E-value=4e-06 Score=80.88 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=46.6
Q ss_pred cEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC
Q 023563 52 MVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG 106 (280)
Q Consensus 52 ~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g 106 (280)
.++.++++..| .+..+++++ |+|.+|+.++|+|+||+|||||+ ++|.+.....
T Consensus 129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL-~~I~~~~~~d 182 (433)
T PRK07594 129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLL-AMLCNAPDAD 182 (433)
T ss_pred ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHH-HHhcCCCCCC
Confidence 57888899888 567899999 99999999999999999999999 9998875433
No 490
>PF13173 AAA_14: AAA domain
Probab=98.04 E-value=2.2e-05 Score=63.10 Aligned_cols=100 Identities=24% Similarity=0.200 Sum_probs=59.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccCCC
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVD 157 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~ 157 (280)
+.++.|.||-|+||||++.+++..+. ...++.++.-.... .......++ .+.+......+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~--------------~~~~~~~~~---~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPR--------------DRRLADPDL---LEYFLELIKPGKK 63 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHH--------------HHHHhhhhh---HHHHHHhhccCCc
Confidence 56899999999999999944333322 23333333211100 000000001 1111111123789
Q ss_pred EEEEeCcccHHHHHHHHHHHHhhc-CCEEEEEEechhHh
Q 023563 158 VIGIDEAQFFEDLYDFCREAADHD-GKTVIVAGLDGDYL 195 (280)
Q Consensus 158 lLlLDEP~~~~~i~~~l~~l~~~~-g~tviivtHdl~~~ 195 (280)
++++||-+...+..+.++.+.+.. +..+++++......
T Consensus 64 ~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 64 YIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred EEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 999999988888888888888763 47899998877655
No 491
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.03 E-value=1.5e-05 Score=78.77 Aligned_cols=141 Identities=15% Similarity=0.138 Sum_probs=76.5
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHh-cchhCCeeEEEecCCcccc--------cccc--eeeeecccc----ccc----
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQ-AETQKGRNVAVIKSNKDTR--------YGLD--SIVTHDGVK----LPC---- 135 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~-gl~~~g~~i~~~~~~~~~~--------~~~~--~v~~~~~~~----~~~---- 135 (280)
+++|+++.|.|++|+|||||....+. |+...|..+.|+.-..... +++. ......... ...
T Consensus 28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~~ 107 (509)
T PRK09302 28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQ 107 (509)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccccc
Confidence 89999999999999999999944443 4433377776664332211 1100 000000000 000
Q ss_pred --ccccCchHHHHHHhhhh-ccCCCEEEEeCccc-----------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCC
Q 023563 136 --CALTTLSSFRQKFGSDA-YDQVDVIGIDEAQF-----------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGS 201 (280)
Q Consensus 136 --~~~~~l~~~~~~~a~aL-~~~p~lLlLDEP~~-----------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~ 201 (280)
....++..+..+...++ ..+|+.+++|=-+. +..+.++++.+.+ .|.|+|+++|+...... ...
T Consensus 108 ~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~-~g~TvLlt~~~~~~~~~-~~~ 185 (509)
T PRK09302 108 EEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQ-KGVTAVITGERGDEYGP-LTR 185 (509)
T ss_pred cccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHh-CCCEEEEEECCccCcCC-ccc
Confidence 00112334444443332 25889999986521 2345566666655 49999999998652110 000
Q ss_pred ccccccccceEEEeec
Q 023563 202 VIDIIPLADSVTKLTA 217 (280)
Q Consensus 202 ~~~ll~~aD~i~~L~~ 217 (280)
......+||.|+.|+.
T Consensus 186 ~~~~~~laDgVI~L~~ 201 (509)
T PRK09302 186 YGVEEFVSDCVIILRN 201 (509)
T ss_pred cCceEEEeeEEEEEeE
Confidence 0011247999999986
No 492
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.02 E-value=1.7e-05 Score=69.70 Aligned_cols=140 Identities=20% Similarity=0.194 Sum_probs=76.4
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhC-CeeEEEecCCcccc--------ccc--ceeeeecccc-ccc-cc----
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-GRNVAVIKSNKDTR--------YGL--DSIVTHDGVK-LPC-CA---- 137 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g~~i~~~~~~~~~~--------~~~--~~v~~~~~~~-~~~-~~---- 137 (280)
+++|.++.|.||+|+|||+|..+.+..-... |.++.|+.-..... +++ .......... .+. ..
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~ 95 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGW 95 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccc
Confidence 7899999999999999999985655544445 78887776433221 111 0000000000 000 00
Q ss_pred -ccCchHHHHHHhhhhc-cCCCEEEEeCccc----------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCcccc
Q 023563 138 -LTTLSSFRQKFGSDAY-DQVDVIGIDEAQF----------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDI 205 (280)
Q Consensus 138 -~~~l~~~~~~~a~aL~-~~p~lLlLDEP~~----------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~l 205 (280)
..++..+......++- .+|+.+++|--+. +..+..+...++ +.|.|+|+++|...... -.....+
T Consensus 96 ~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~-~~~~t~llt~~~~~~~~--~~~~~~i 172 (226)
T PF06745_consen 96 SPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLK-SRGVTTLLTSEMPSGSE--DDGTFGI 172 (226)
T ss_dssp TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHH-HTTEEEEEEEEESSSSS--SSSSTSH
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHH-HCCCEEEEEEccccCcc--cccccch
Confidence 2344555555433322 3779999997622 223444445554 45999999998321100 0112233
Q ss_pred cc-ccceEEEeec
Q 023563 206 IP-LADSVTKLTA 217 (280)
Q Consensus 206 l~-~aD~i~~L~~ 217 (280)
.. +||-|+.|+.
T Consensus 173 ~~~l~D~vI~L~~ 185 (226)
T PF06745_consen 173 EHYLADGVIELRY 185 (226)
T ss_dssp HHHHSSEEEEEEE
T ss_pred hhhcccEEEEEEE
Confidence 45 7999999986
No 493
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.01 E-value=4e-06 Score=71.78 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
|++++|+||||||||||+ +.|++..
T Consensus 2 g~~i~l~G~sGsGKsTl~-~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLL-AALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHH-HHHhccC
Confidence 789999999999999999 9888753
No 494
>PRK06893 DNA replication initiation factor; Validated
Probab=97.99 E-value=3e-05 Score=68.77 Aligned_cols=87 Identities=20% Similarity=0.277 Sum_probs=53.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccCCC
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVD 157 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~ 157 (280)
-.+.|.||+|+|||+|+ ..++... ..+.++.|+.-... . .....+.+ -+.+++
T Consensus 40 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~~y~~~~~~------------~--------~~~~~~~~-----~~~~~d 93 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLL-KAVSNHYLLNQRTAIYIPLSKS------------Q--------YFSPAVLE-----NLEQQD 93 (229)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHcCCCeEEeeHHHh------------h--------hhhHHHHh-----hcccCC
Confidence 35789999999999999 8877642 23334433322100 0 00001111 134789
Q ss_pred EEEEeCccc-------HHHHHHHHHHHHhhcCCEEEEEEech
Q 023563 158 VIGIDEAQF-------FEDLYDFCREAADHDGKTVIVAGLDG 192 (280)
Q Consensus 158 lLlLDEP~~-------~~~i~~~l~~l~~~~g~tviivtHdl 192 (280)
+|++||... ...+++++.+..+. |.++|++|++.
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~-~~~illits~~ 134 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQ-GKTLLLISADC 134 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHc-CCcEEEEeCCC
Confidence 999999943 23577777777654 77887777765
No 495
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.99 E-value=8.9e-06 Score=75.97 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=27.7
Q ss_pred eeeeEeeC--ceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 70 EASVSSPS--GEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 70 ~isl~i~~--Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
+|+..+++ ++.++|+|++|+|||||+ +.|++.
T Consensus 152 ~i~~~~~~~~~~~~~~~G~~~~gkstl~-~~l~~~ 185 (325)
T TIGR01526 152 HIPREVRPFFVKTVAILGGESTGKSTLV-NKLAAV 185 (325)
T ss_pred hCCHHHHhhcCcEEEEECCCCCCHHHHH-HHHHHh
Confidence 46777888 999999999999999999 777764
No 496
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.98 E-value=8.1e-06 Score=77.84 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=37.1
Q ss_pred hhhhccCCCEEEEeCcccHHHHH------HHHHHHHhhcCCEEEEEEechhHhhh
Q 023563 149 GSDAYDQVDVIGIDEAQFFEDLY------DFCREAADHDGKTVIVAGLDGDYLRR 197 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~~~i~------~~l~~l~~~~g~tviivtHdl~~~~~ 197 (280)
|.+.+++.++.++|||.+.+|+- ..|+.+... +.=||+|.||++....
T Consensus 225 a~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p-~~YiIVVEHDLsVLDy 278 (592)
T KOG0063|consen 225 AMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINP-DRYIIVVEHDLSVLDY 278 (592)
T ss_pred hhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCC-CCeEEEEEeechHHHh
Confidence 44567899999999998776643 345566554 7789999999998764
No 497
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.98 E-value=6.9e-06 Score=69.66 Aligned_cols=31 Identities=32% Similarity=0.545 Sum_probs=24.6
Q ss_pred eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563 68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ 100 (280)
Q Consensus 68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~ 100 (280)
++++++++.+| +++|+||||+||||++ .+|.
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil-~ai~ 40 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTIL-EAIR 40 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHH-HHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHH-HHHH
Confidence 47788888887 9999999999999999 5443
No 498
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.97 E-value=4.7e-06 Score=71.06 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
+|++++|+|||||||||++ +.++++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~-~~la~~ 26 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIG-SKIAAL 26 (176)
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHh
Confidence 5999999999999999999 988885
No 499
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=97.97 E-value=9.3e-05 Score=77.12 Aligned_cols=64 Identities=17% Similarity=0.105 Sum_probs=47.6
Q ss_pred hccCCCEEEEeCccc-------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 152 AYDQVDVIGIDEAQF-------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 152 L~~~p~lLlLDEP~~-------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
+-.+|+++++|||.. +..+.+.++.+++. |.+++++||+++.+.+. +....|+.-|+..++|.+
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~-~~~~i~~TQ~~~d~~~s-~~~~~il~n~~t~i~L~~ 702 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKK-NVSVIFATQSLADIDGS-AIAPAIIESCPTRIFLPN 702 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHhcC-chHHHHHHhCCeeEEcCC
Confidence 346999999999932 34577788888765 99999999999987642 234456777887777665
No 500
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.97 E-value=8.6e-06 Score=76.00 Aligned_cols=45 Identities=20% Similarity=0.025 Sum_probs=38.5
Q ss_pred ceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563 58 PLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ 104 (280)
Q Consensus 58 ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~ 104 (280)
++..| .+..+++++ +.+.+|++++|+|+||+|||||+ ++|++...
T Consensus 49 ~~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl-~~Ia~~~~ 94 (326)
T cd01136 49 IDEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLL-GMIARGTT 94 (326)
T ss_pred ceeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHH-HHHhCCCC
Confidence 44445 356799999 99999999999999999999999 99998754
Done!