Query 023563
Match_columns 280
No_of_seqs 242 out of 2432
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 08:58:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1.8E-33 6E-38 263.4 14.3 171 49-230 21-253 (366)
2 3gfo_A Cobalt import ATP-bindi 100.0 1.1E-33 3.7E-38 256.1 11.0 168 50-229 5-232 (275)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 3.2E-33 1.1E-37 261.3 13.8 170 51-231 3-229 (359)
4 3rlf_A Maltose/maltodextrin im 100.0 3.6E-33 1.2E-37 262.7 10.9 169 52-231 3-224 (381)
5 1b0u_A Histidine permease; ABC 100.0 9.8E-33 3.4E-37 248.0 13.0 167 51-229 5-241 (262)
6 4g1u_C Hemin import ATP-bindin 100.0 2.9E-33 1E-37 252.0 9.5 168 51-229 10-236 (266)
7 2olj_A Amino acid ABC transpor 100.0 1.8E-32 6E-37 246.6 13.5 167 51-229 23-247 (263)
8 1ji0_A ABC transporter; ATP bi 100.0 2.9E-33 9.8E-38 248.3 8.1 168 50-229 4-227 (240)
9 1g6h_A High-affinity branched- 100.0 1.8E-33 6.2E-38 252.0 6.7 165 51-227 6-239 (257)
10 1vpl_A ABC transporter, ATP-bi 100.0 3.3E-32 1.1E-36 243.9 14.4 168 50-229 13-234 (256)
11 2pcj_A ABC transporter, lipopr 100.0 3.7E-32 1.3E-36 238.9 14.3 161 51-224 3-222 (224)
12 3tif_A Uncharacterized ABC tra 100.0 5.9E-32 2E-36 239.2 13.2 166 52-229 1-233 (235)
13 2it1_A 362AA long hypothetical 100.0 4.7E-32 1.6E-36 253.9 13.2 168 52-230 3-223 (362)
14 1g29_1 MALK, maltose transport 100.0 1.1E-31 3.9E-36 252.2 15.2 164 52-230 3-229 (372)
15 2ihy_A ABC transporter, ATP-bi 100.0 3.7E-32 1.3E-36 246.5 10.9 172 46-229 15-251 (279)
16 2yyz_A Sugar ABC transporter, 100.0 1.2E-31 4.1E-36 250.9 14.3 168 52-230 3-223 (359)
17 1oxx_K GLCV, glucose, ABC tran 100.0 8.5E-32 2.9E-36 251.6 12.3 168 52-230 3-230 (353)
18 1z47_A CYSA, putative ABC-tran 100.0 1.2E-31 4.1E-36 250.5 12.9 170 50-230 12-235 (355)
19 1v43_A Sugar-binding transport 100.0 2.2E-31 7.4E-36 250.2 14.4 168 52-230 11-231 (372)
20 2nq2_C Hypothetical ABC transp 100.0 2.6E-31 9E-36 237.6 12.5 167 51-229 3-216 (253)
21 2yz2_A Putative ABC transporte 100.0 1.7E-31 5.9E-36 240.3 10.7 166 52-229 2-226 (266)
22 3d31_A Sulfate/molybdate ABC t 100.0 5.2E-31 1.8E-35 245.7 13.9 168 52-231 1-218 (348)
23 2zu0_C Probable ATP-dependent 100.0 4.9E-31 1.7E-35 237.5 10.5 168 50-229 18-253 (267)
24 2onk_A Molybdate/tungstate ABC 100.0 8.4E-31 2.9E-35 232.7 11.1 164 52-229 1-215 (240)
25 2ixe_A Antigen peptide transpo 100.0 1.6E-30 5.6E-35 234.6 12.5 167 51-229 15-244 (271)
26 2d2e_A SUFC protein; ABC-ATPas 100.0 2.1E-30 7.1E-35 231.2 12.0 163 52-226 3-229 (250)
27 2ff7_A Alpha-hemolysin translo 100.0 6E-30 2E-34 228.0 12.6 164 52-229 7-231 (247)
28 1mv5_A LMRA, multidrug resista 100.0 7.2E-30 2.4E-34 226.7 12.3 164 52-229 1-225 (243)
29 3nh6_A ATP-binding cassette SU 100.0 1.2E-29 4.2E-34 232.7 12.1 165 51-229 52-276 (306)
30 2ghi_A Transport protein; mult 100.0 1.8E-29 6.3E-34 226.4 11.0 165 51-229 16-241 (260)
31 2pze_A Cystic fibrosis transme 100.0 1E-29 3.6E-34 223.9 6.9 165 51-229 5-217 (229)
32 2qi9_C Vitamin B12 import ATP- 100.0 2E-29 6.8E-34 225.0 7.6 163 51-229 3-221 (249)
33 3gd7_A Fusion complex of cysti 100.0 5.6E-29 1.9E-33 235.1 10.9 167 51-231 18-243 (390)
34 2cbz_A Multidrug resistance-as 100.0 4E-29 1.4E-33 221.3 8.7 161 52-229 3-216 (237)
35 1sgw_A Putative ABC transporte 100.0 2.3E-28 7.8E-33 213.5 11.7 156 51-219 9-210 (214)
36 2pjz_A Hypothetical protein ST 100.0 2.1E-28 7.3E-33 220.0 11.1 162 52-229 1-214 (263)
37 3b5x_A Lipid A export ATP-bind 99.9 4.1E-27 1.4E-31 232.8 11.2 165 51-229 340-566 (582)
38 3b60_A Lipid A export ATP-bind 99.9 3.6E-27 1.2E-31 233.2 9.9 165 51-229 340-566 (582)
39 3qf4_A ABC transporter, ATP-bi 99.9 8.3E-27 2.8E-31 230.9 11.6 165 51-229 340-565 (587)
40 2yl4_A ATP-binding cassette SU 99.9 1.5E-26 5.3E-31 229.2 12.4 163 53-229 342-569 (595)
41 2bbs_A Cystic fibrosis transme 99.9 1.9E-27 6.4E-32 216.7 5.3 163 51-229 39-246 (290)
42 4a82_A Cystic fibrosis transme 99.9 6.8E-27 2.3E-31 231.1 9.5 164 52-229 339-563 (578)
43 1yqt_A RNAse L inhibitor; ATP- 99.9 1.6E-26 5.5E-31 226.8 11.3 168 50-229 285-492 (538)
44 3qf4_B Uncharacterized ABC tra 99.9 8.7E-27 3E-31 231.2 9.2 164 52-229 354-577 (598)
45 3ozx_A RNAse L inhibitor; ATP 99.9 2.8E-26 9.6E-31 225.0 12.0 156 50-217 267-461 (538)
46 3bk7_A ABC transporter ATP-bin 99.9 3.4E-26 1.2E-30 227.2 10.9 168 50-229 355-562 (607)
47 3j16_B RLI1P; ribosome recycli 99.9 2.8E-25 9.5E-30 220.6 8.2 164 55-229 349-558 (608)
48 3bk7_A ABC transporter ATP-bin 99.9 9.2E-25 3.1E-29 216.9 9.9 153 52-218 83-304 (607)
49 2iw3_A Elongation factor 3A; a 99.9 2.2E-24 7.4E-29 222.6 11.7 163 52-229 435-634 (986)
50 4f4c_A Multidrug resistance pr 99.9 4.6E-25 1.6E-29 235.6 5.9 165 52-230 1076-1304(1321)
51 1w4r_A Thymidine kinase; type 99.9 6.9E-24 2.3E-28 182.1 12.1 175 76-257 18-192 (195)
52 1yqt_A RNAse L inhibitor; ATP- 99.9 1.6E-24 5.5E-29 212.6 9.3 152 53-218 21-234 (538)
53 3g5u_A MCG1178, multidrug resi 99.9 2.7E-24 9.4E-29 229.1 10.7 164 52-229 387-612 (1284)
54 4f4c_A Multidrug resistance pr 99.9 4.8E-24 1.6E-28 227.7 12.5 164 52-229 415-640 (1321)
55 3g5u_A MCG1178, multidrug resi 99.9 1.5E-24 5.1E-29 231.1 5.8 165 51-229 1029-1257(1284)
56 2iw3_A Elongation factor 3A; a 99.9 7.8E-24 2.7E-28 218.5 10.5 53 50-103 669-723 (986)
57 3e2i_A Thymidine kinase; Zn-bi 99.9 1.5E-22 5.2E-27 176.0 11.7 179 76-259 26-211 (219)
58 2orv_A Thymidine kinase; TP4A 99.9 2.9E-22 9.9E-27 176.0 12.6 178 75-259 16-193 (234)
59 3ux8_A Excinuclease ABC, A sub 99.9 2.9E-23 9.8E-28 208.3 6.4 69 149-229 214-297 (670)
60 2j9r_A Thymidine kinase; TK1, 99.9 2.3E-22 7.9E-27 175.0 10.8 178 75-258 25-210 (214)
61 1xx6_A Thymidine kinase; NESG, 99.9 4.3E-22 1.5E-26 170.9 12.0 178 76-258 6-190 (191)
62 3j16_B RLI1P; ribosome recycli 99.9 1.2E-22 4.3E-27 201.5 3.5 149 56-217 81-296 (608)
63 2b8t_A Thymidine kinase; deoxy 99.8 5.5E-21 1.9E-25 167.7 13.1 182 76-259 10-199 (223)
64 3ux8_A Excinuclease ABC, A sub 99.8 1.9E-21 6.5E-26 195.1 9.8 69 149-229 555-639 (670)
65 2orw_A Thymidine kinase; TMTK, 99.8 3E-21 1E-25 164.4 8.5 176 77-257 2-179 (184)
66 3ozx_A RNAse L inhibitor; ATP 99.8 4.6E-21 1.6E-25 188.0 7.6 57 149-217 150-212 (538)
67 1znw_A Guanylate kinase, GMP k 99.8 9.6E-22 3.3E-26 169.3 -0.3 140 65-217 9-203 (207)
68 2npi_A Protein CLP1; CLP1-PCF1 99.8 2.9E-22 9.9E-27 193.1 -5.0 158 50-228 116-336 (460)
69 4gp7_A Metallophosphoesterase; 99.8 2.6E-20 9E-25 156.0 7.2 125 70-197 1-164 (171)
70 2vf7_A UVRA2, excinuclease ABC 99.8 2.6E-20 9E-25 190.3 6.4 69 149-229 742-826 (842)
71 2o8b_B DNA mismatch repair pro 99.8 7.3E-20 2.5E-24 190.8 8.7 163 50-227 748-939 (1022)
72 2ehv_A Hypothetical protein PH 99.8 2E-19 6.8E-24 157.1 6.9 160 52-217 6-207 (251)
73 3pih_A Uvrabc system protein A 99.8 1.3E-18 4.5E-23 179.1 13.7 69 149-229 817-901 (916)
74 2ygr_A Uvrabc system protein A 99.8 1.2E-19 4E-24 187.1 5.2 69 149-229 875-959 (993)
75 2r6f_A Excinuclease ABC subuni 99.8 1.9E-19 6.4E-24 185.0 6.1 69 149-229 857-941 (972)
76 1tf7_A KAIC; homohexamer, hexa 99.8 4.4E-19 1.5E-23 173.2 8.3 172 51-228 11-219 (525)
77 3b85_A Phosphate starvation-in 99.8 4.2E-20 1.4E-24 160.4 -0.4 129 60-196 8-162 (208)
78 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.6E-19 5.6E-24 166.9 0.5 137 55-217 151-289 (330)
79 4aby_A DNA repair protein RECN 99.7 5.9E-19 2E-23 166.4 4.4 54 149-215 307-368 (415)
80 3thx_A DNA mismatch repair pro 99.7 3.8E-18 1.3E-22 176.2 9.0 164 52-229 631-812 (934)
81 2eyu_A Twitching motility prot 99.7 3.4E-18 1.2E-22 153.2 5.4 139 52-217 5-147 (261)
82 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 3.7E-17 1.3E-21 152.9 9.9 56 154-221 302-364 (365)
83 1cr0_A DNA primase/helicase; R 99.7 2.9E-17 1E-21 148.3 7.6 153 66-219 23-237 (296)
84 4a74_A DNA repair and recombin 99.7 1.1E-16 3.8E-21 137.9 9.9 133 74-217 21-199 (231)
85 1wb9_A DNA mismatch repair pro 99.7 4.6E-17 1.6E-21 166.0 6.1 152 63-229 593-757 (800)
86 3b9q_A Chloroplast SRP recepto 99.7 1.9E-16 6.3E-21 144.8 8.8 156 58-217 80-281 (302)
87 3thx_B DNA mismatch repair pro 99.6 1E-16 3.5E-21 165.2 7.0 130 64-196 659-800 (918)
88 3jvv_A Twitching mobility prot 99.6 2.1E-16 7.3E-21 147.5 7.9 130 66-216 104-244 (356)
89 2w0m_A SSO2452; RECA, SSPF, un 99.6 5.2E-16 1.8E-20 133.4 7.8 150 65-217 9-191 (235)
90 1ewq_A DNA mismatch repair pro 99.6 7.4E-16 2.5E-20 156.4 8.8 132 52-196 550-702 (765)
91 2v9p_A Replication protein E1; 99.6 1E-18 3.5E-23 160.0 -11.4 146 52-228 101-264 (305)
92 1ye8_A Protein THEP1, hypothet 99.6 1.9E-15 6.4E-20 127.8 9.2 120 80-211 2-152 (178)
93 2og2_A Putative signal recogni 99.6 1.8E-15 6E-20 141.4 9.1 145 69-217 148-338 (359)
94 2dpy_A FLII, flagellum-specifi 99.5 8.6E-17 2.9E-21 154.0 -6.2 161 51-229 130-343 (438)
95 1tf7_A KAIC; homohexamer, hexa 99.5 1.3E-15 4.3E-20 148.7 1.7 159 52-218 257-444 (525)
96 1z6g_A Guanylate kinase; struc 99.5 6.7E-16 2.3E-20 134.2 -0.9 38 65-103 10-47 (218)
97 1e69_A Chromosome segregation 99.5 2.4E-14 8.2E-19 131.3 8.3 56 149-217 231-298 (322)
98 2obl_A ESCN; ATPase, hydrolase 99.5 4.5E-16 1.5E-20 144.8 -3.3 163 51-229 44-254 (347)
99 2cvh_A DNA repair and recombin 99.5 4.1E-14 1.4E-18 121.0 9.1 148 67-217 8-184 (220)
100 3szr_A Interferon-induced GTP- 99.5 1.2E-14 4E-19 144.4 5.1 174 52-229 10-236 (608)
101 1tq4_A IIGP1, interferon-induc 99.5 1.2E-15 4.1E-20 145.0 -2.2 136 65-213 36-248 (413)
102 2ewv_A Twitching motility prot 99.5 4.2E-14 1.4E-18 132.6 5.7 127 67-216 127-257 (372)
103 3qkt_A DNA double-strand break 99.4 4.1E-13 1.4E-17 124.0 11.5 57 149-217 266-328 (339)
104 2jeo_A Uridine-cytidine kinase 99.4 2.4E-13 8.1E-18 119.7 7.3 54 61-115 8-67 (245)
105 1nlf_A Regulatory protein REPA 99.4 8.4E-13 2.9E-17 118.2 9.1 121 75-196 27-185 (279)
106 1pzn_A RAD51, DNA repair and r 99.4 1.7E-12 5.7E-17 120.7 11.3 129 67-196 119-290 (349)
107 1rj9_A FTSY, signal recognitio 99.4 5.8E-13 2E-17 121.6 8.0 116 77-194 101-260 (304)
108 2qag_C Septin-7; cell cycle, c 99.4 1.2E-13 4.1E-18 131.4 3.6 47 51-104 10-56 (418)
109 3ec2_A DNA replication protein 99.4 1.5E-13 5.1E-18 114.9 3.1 105 72-194 32-145 (180)
110 3aez_A Pantothenate kinase; tr 99.4 3.1E-14 1E-18 130.6 -1.9 139 51-197 42-233 (312)
111 2i3b_A HCR-ntpase, human cance 99.4 8.8E-13 3E-17 112.5 6.8 25 78-103 1-25 (189)
112 2gza_A Type IV secretion syste 99.3 1.4E-13 4.7E-18 128.5 1.4 146 54-217 137-301 (361)
113 1n0w_A DNA repair protein RAD5 99.3 2.3E-12 7.9E-17 111.7 8.8 143 74-217 20-208 (243)
114 1s96_A Guanylate kinase, GMP k 99.3 3.6E-13 1.2E-17 117.4 3.7 119 73-197 11-145 (219)
115 2kjq_A DNAA-related protein; s 99.3 2.1E-12 7.2E-17 105.8 8.0 83 77-191 35-124 (149)
116 2qag_B Septin-6, protein NEDD5 99.3 2.5E-13 8.7E-18 129.2 1.0 53 52-107 16-70 (427)
117 1htw_A HI0065; nucleotide-bind 99.3 8.8E-14 3E-18 115.5 -4.5 51 53-104 8-58 (158)
118 2qnr_A Septin-2, protein NEDD5 99.3 8.5E-12 2.9E-16 113.5 7.9 40 56-102 2-41 (301)
119 2dr3_A UPF0273 protein PH0284; 99.2 5.2E-11 1.8E-15 103.2 11.6 148 68-217 12-196 (247)
120 2o5v_A DNA replication and rep 99.2 2.1E-11 7.3E-16 113.7 9.4 57 154-228 291-354 (359)
121 3e70_C DPA, signal recognition 99.2 2.6E-11 8.9E-16 111.8 7.7 117 74-192 125-279 (328)
122 2yhs_A FTSY, cell division pro 99.2 3.1E-11 1.1E-15 116.6 8.2 127 68-196 283-452 (503)
123 3lda_A DNA repair protein RAD5 99.2 9.2E-11 3.2E-15 110.9 10.9 141 74-217 174-362 (400)
124 3asz_A Uridine kinase; cytidin 99.2 2.9E-12 9.9E-17 109.4 0.6 39 75-116 3-41 (211)
125 1lw7_A Transcriptional regulat 99.1 1.3E-11 4.5E-16 114.8 2.5 146 68-229 158-354 (365)
126 2bdt_A BH3686; alpha-beta prot 99.1 9E-12 3.1E-16 104.6 -0.5 64 152-229 115-183 (189)
127 2zr9_A Protein RECA, recombina 99.1 5.1E-10 1.7E-14 103.9 10.3 146 74-224 57-237 (349)
128 2qm8_A GTPase/ATPase; G protei 99.0 3.5E-11 1.2E-15 111.3 -0.5 63 52-115 29-92 (337)
129 3sop_A Neuronal-specific septi 99.0 3.8E-10 1.3E-14 101.2 5.9 23 80-103 4-26 (270)
130 1f2t_B RAD50 ABC-ATPase; DNA d 98.9 8.7E-10 3E-14 90.4 5.7 57 149-217 75-137 (148)
131 3nwj_A ATSK2; P loop, shikimat 98.9 6.3E-11 2.2E-15 105.3 -1.9 50 51-101 16-70 (250)
132 2px0_A Flagellar biosynthesis 98.8 2.2E-09 7.5E-14 97.5 5.3 118 76-197 103-231 (296)
133 3pih_A Uvrabc system protein A 98.8 1.9E-09 6.6E-14 111.1 5.0 69 149-229 476-559 (916)
134 2r6a_A DNAB helicase, replicat 98.8 5E-09 1.7E-13 100.2 7.2 153 66-219 191-401 (454)
135 2oap_1 GSPE-2, type II secreti 98.8 7.7E-09 2.6E-13 100.6 8.3 117 65-191 247-366 (511)
136 1pui_A ENGB, probable GTP-bind 98.8 6.9E-10 2.3E-14 93.8 0.6 48 52-103 3-50 (210)
137 1sq5_A Pantothenate kinase; P- 98.8 1.3E-10 4.4E-15 105.9 -4.3 59 51-112 36-116 (308)
138 3lnc_A Guanylate kinase, GMP k 98.8 1.4E-09 4.7E-14 94.3 2.3 37 66-103 15-52 (231)
139 2r6f_A Excinuclease ABC subuni 98.8 6.8E-09 2.3E-13 107.0 6.4 69 149-229 516-599 (972)
140 3tr0_A Guanylate kinase, GMP k 98.7 3.8E-09 1.3E-13 89.1 3.0 31 72-103 1-31 (205)
141 1p9r_A General secretion pathw 98.7 1E-08 3.4E-13 97.5 6.1 127 52-191 143-270 (418)
142 3euj_A Chromosome partition pr 98.7 4.9E-09 1.7E-13 101.2 3.9 36 65-102 17-52 (483)
143 2ygr_A Uvrabc system protein A 98.7 8.5E-09 2.9E-13 106.6 5.7 69 149-229 533-616 (993)
144 2vf7_A UVRA2, excinuclease ABC 98.7 1.2E-08 4.1E-13 104.4 6.5 69 149-229 391-474 (842)
145 1vma_A Cell division protein F 98.7 3E-08 1E-12 90.5 8.1 108 70-178 96-212 (306)
146 1sxj_E Activator 1 40 kDa subu 98.7 1.9E-08 6.7E-13 91.9 6.4 41 153-195 132-177 (354)
147 3hr8_A Protein RECA; alpha and 98.6 2.1E-07 7.2E-12 86.6 11.2 137 75-217 58-229 (356)
148 1ls1_A Signal recognition part 98.6 1.3E-08 4.4E-13 92.3 2.9 58 53-115 77-135 (295)
149 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 2.9E-09 1E-13 100.3 -1.9 58 155-225 139-208 (392)
150 1udx_A The GTP-binding protein 98.6 1.6E-07 5.6E-12 89.0 10.0 34 68-102 147-180 (416)
151 3uie_A Adenylyl-sulfate kinase 98.5 1E-08 3.5E-13 87.0 0.4 47 56-103 3-49 (200)
152 3kta_A Chromosome segregation 98.5 3.6E-08 1.2E-12 81.8 3.7 32 69-102 18-49 (182)
153 2ce7_A Cell division protein F 98.5 1.4E-07 4.8E-12 91.0 7.4 123 54-196 27-168 (476)
154 1nij_A Hypothetical protein YJ 98.5 3.9E-08 1.3E-12 89.8 2.6 39 152-197 156-194 (318)
155 1zp6_A Hypothetical protein AT 98.5 6.7E-08 2.3E-12 80.6 3.7 28 74-102 5-32 (191)
156 3vaa_A Shikimate kinase, SK; s 98.5 6.4E-08 2.2E-12 81.9 3.3 37 64-101 11-47 (199)
157 1v5w_A DMC1, meiotic recombina 98.5 7.5E-07 2.6E-11 82.1 10.4 142 74-217 118-308 (343)
158 1zu4_A FTSY; GTPase, signal re 98.4 8.1E-07 2.8E-11 81.4 9.7 47 68-115 95-142 (320)
159 1u94_A RECA protein, recombina 98.4 1.6E-06 5.6E-11 80.5 11.7 145 75-223 60-238 (356)
160 3c8u_A Fructokinase; YP_612366 98.4 9.9E-08 3.4E-12 81.4 2.9 39 75-114 19-58 (208)
161 1lvg_A Guanylate kinase, GMP k 98.4 7.9E-08 2.7E-12 81.7 2.2 27 76-103 2-28 (198)
162 2j41_A Guanylate kinase; GMP, 98.4 1.4E-07 4.6E-12 79.5 3.3 30 73-103 1-30 (207)
163 2z43_A DNA repair and recombin 98.4 1.4E-06 4.9E-11 79.5 10.3 143 74-217 103-289 (324)
164 1in4_A RUVB, holliday junction 98.3 1.5E-08 5.3E-13 92.9 -4.6 51 52-103 18-75 (334)
165 3a00_A Guanylate kinase, GMP k 98.3 1.7E-07 5.8E-12 78.5 2.2 26 78-104 1-26 (186)
166 4ad8_A DNA repair protein RECN 98.3 5.9E-07 2E-11 87.2 5.8 56 149-217 409-472 (517)
167 2ius_A DNA translocase FTSK; n 98.3 1.8E-06 6.1E-11 83.9 8.9 30 70-100 159-188 (512)
168 1ixz_A ATP-dependent metallopr 98.3 2.8E-08 9.4E-13 87.1 -3.7 49 52-103 25-73 (254)
169 1fnn_A CDC6P, cell division co 98.3 9.3E-07 3.2E-11 81.1 6.4 118 77-196 41-173 (389)
170 4eun_A Thermoresistant glucoki 98.3 3.9E-07 1.4E-11 77.0 3.3 36 67-103 18-53 (200)
171 1iy2_A ATP-dependent metallopr 98.2 3.6E-08 1.2E-12 87.7 -3.6 49 52-103 49-97 (278)
172 1qhl_A Protein (cell division 98.2 2.1E-08 7.2E-13 87.7 -5.1 43 52-103 9-51 (227)
173 1w1w_A Structural maintenance 98.2 4.9E-07 1.7E-11 85.6 3.6 52 154-217 354-411 (430)
174 1kgd_A CASK, peripheral plasma 98.2 5.2E-07 1.8E-11 75.2 3.3 26 77-103 4-29 (180)
175 3tqc_A Pantothenate kinase; bi 98.2 3.8E-08 1.3E-12 90.4 -4.1 58 56-114 64-130 (321)
176 2qby_A CDC6 homolog 1, cell di 98.2 8.9E-07 3E-11 80.8 4.7 119 76-196 43-177 (386)
177 2zts_A Putative uncharacterize 98.2 1.1E-05 3.9E-10 69.2 11.3 143 75-217 27-207 (251)
178 2x8a_A Nuclear valosin-contain 98.2 1.5E-07 5E-12 84.3 -0.8 40 61-103 29-68 (274)
179 1svm_A Large T antigen; AAA+ f 98.2 2.7E-07 9.4E-12 86.4 0.3 37 65-102 156-192 (377)
180 2z4s_A Chromosomal replication 98.2 3E-06 1E-10 80.7 7.5 98 78-192 130-237 (440)
181 4a1f_A DNAB helicase, replicat 98.1 4.1E-06 1.4E-10 77.3 7.7 123 68-190 36-164 (338)
182 1lv7_A FTSH; alpha/beta domain 98.1 6.1E-06 2.1E-10 72.1 8.5 33 67-102 36-68 (257)
183 3k1j_A LON protease, ATP-depen 98.1 1.6E-06 5.5E-11 85.7 5.1 50 53-103 35-84 (604)
184 4e22_A Cytidylate kinase; P-lo 98.1 1E-06 3.6E-11 77.5 3.3 26 76-102 25-53 (252)
185 1xp8_A RECA protein, recombina 98.1 1.2E-05 4.1E-10 74.9 10.6 140 75-217 71-242 (366)
186 2vp4_A Deoxynucleoside kinase; 98.1 1.1E-06 3.7E-11 76.1 2.9 37 73-113 15-51 (230)
187 3tau_A Guanylate kinase, GMP k 98.1 1.5E-06 5E-11 74.2 3.4 27 76-103 6-32 (208)
188 3cf0_A Transitional endoplasmi 98.1 5.4E-06 1.8E-10 74.7 7.2 29 73-102 44-72 (301)
189 2p67_A LAO/AO transport system 98.1 1.3E-07 4.4E-12 87.2 -3.9 63 52-115 30-93 (341)
190 3bh0_A DNAB-like replicative h 98.1 8.1E-06 2.8E-10 74.2 8.2 124 66-191 56-190 (315)
191 3bos_A Putative DNA replicatio 98.1 2E-05 6.8E-10 67.0 9.9 89 77-192 51-148 (242)
192 4ad8_A DNA repair protein RECN 98.0 8.1E-07 2.8E-11 86.2 0.2 33 67-101 50-82 (517)
193 2bbw_A Adenylate kinase 4, AK4 98.0 2.8E-06 9.6E-11 74.0 3.6 25 77-102 26-53 (246)
194 2dhr_A FTSH; AAA+ protein, hex 98.0 1.1E-06 3.9E-11 85.1 1.1 49 52-103 40-88 (499)
195 1u0l_A Probable GTPase ENGC; p 98.0 1.5E-06 5E-11 78.7 1.7 30 73-103 164-193 (301)
196 1knq_A Gluconate kinase; ALFA/ 98.0 2.9E-06 1E-10 69.6 3.3 26 76-102 6-31 (175)
197 2q6t_A DNAB replication FORK h 98.0 3.5E-05 1.2E-09 73.2 10.6 149 68-217 190-397 (444)
198 1t9h_A YLOQ, probable GTPase E 98.0 1E-06 3.5E-11 80.3 -0.1 29 73-102 168-196 (307)
199 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 4.4E-06 1.5E-10 67.9 3.6 28 71-100 17-44 (149)
200 1ypw_A Transitional endoplasmi 97.9 5.6E-06 1.9E-10 84.6 5.1 29 73-102 233-261 (806)
201 3b9p_A CG5977-PA, isoform A; A 97.9 4E-05 1.4E-09 68.1 10.2 25 77-102 53-77 (297)
202 2r8r_A Sensor protein; KDPD, P 97.9 1.9E-06 6.6E-11 75.2 1.5 149 76-232 3-173 (228)
203 3ice_A Transcription terminati 97.9 2.1E-06 7.2E-11 80.6 1.6 50 52-102 133-197 (422)
204 1l8q_A Chromosomal replication 97.9 8.4E-06 2.9E-10 73.7 5.5 97 77-191 36-140 (324)
205 2i1q_A DNA repair and recombin 97.9 2E-05 6.8E-10 71.5 7.8 142 74-217 94-290 (322)
206 2xau_A PRE-mRNA-splicing facto 97.9 1.3E-05 4.6E-10 81.5 6.9 123 75-198 106-258 (773)
207 3auy_A DNA double-strand break 97.9 1.2E-05 4E-10 74.8 6.0 54 151-217 300-360 (371)
208 1kag_A SKI, shikimate kinase I 97.9 4.4E-06 1.5E-10 68.2 2.7 25 77-102 3-27 (173)
209 2wji_A Ferrous iron transport 97.9 0.00014 4.6E-09 58.8 11.6 22 80-102 5-26 (165)
210 2rcn_A Probable GTPase ENGC; Y 97.9 5.5E-06 1.9E-10 77.0 3.5 35 67-103 205-239 (358)
211 3kta_B Chromosome segregation 97.9 2.2E-05 7.6E-10 65.6 6.6 56 149-217 76-141 (173)
212 3ney_A 55 kDa erythrocyte memb 97.9 6.3E-06 2.2E-10 70.4 3.1 29 73-102 14-42 (197)
213 2qt1_A Nicotinamide riboside k 97.9 6.9E-06 2.4E-10 69.4 3.3 41 71-115 14-54 (207)
214 1rz3_A Hypothetical protein rb 97.8 7.2E-06 2.5E-10 69.4 3.3 39 74-113 18-57 (201)
215 3cmw_A Protein RECA, recombina 97.8 4.7E-05 1.6E-09 82.9 9.8 140 75-217 729-900 (1706)
216 3kl4_A SRP54, signal recogniti 97.8 1.6E-05 5.3E-10 75.8 5.4 38 77-115 96-134 (433)
217 2yv5_A YJEQ protein; hydrolase 97.8 5.3E-06 1.8E-10 75.1 2.0 28 73-102 160-187 (302)
218 3h4m_A Proteasome-activating n 97.8 5.9E-05 2E-09 66.5 8.7 26 75-101 48-73 (285)
219 2dy1_A Elongation factor G; tr 97.8 7.7E-05 2.6E-09 74.6 10.3 120 72-195 3-139 (665)
220 3io5_A Recombination and repai 97.7 7.7E-05 2.6E-09 68.3 8.4 119 75-200 26-179 (333)
221 1w1w_A Structural maintenance 97.7 3.5E-05 1.2E-09 72.8 6.0 43 53-102 7-49 (430)
222 2e87_A Hypothetical protein PH 97.7 0.00011 3.8E-09 67.7 9.2 25 77-102 166-190 (357)
223 3cmw_A Protein RECA, recombina 97.7 9.1E-05 3.1E-09 80.7 9.8 146 75-223 380-558 (1706)
224 4eaq_A DTMP kinase, thymidylat 97.7 1.9E-05 6.5E-10 68.6 3.7 35 67-102 12-49 (229)
225 1y63_A LMAJ004144AAA protein; 97.7 1.9E-05 6.4E-10 65.7 3.1 31 70-101 2-32 (184)
226 3llm_A ATP-dependent RNA helic 97.7 8.8E-05 3E-09 64.0 7.3 22 74-95 72-93 (235)
227 3qks_A DNA double-strand break 97.6 2.5E-05 8.7E-10 66.5 3.6 29 70-100 16-44 (203)
228 2f1r_A Molybdopterin-guanine d 97.6 1.1E-05 3.9E-10 67.1 1.2 25 79-104 3-27 (171)
229 2w58_A DNAI, primosome compone 97.6 8.2E-05 2.8E-09 62.3 6.4 23 79-102 55-77 (202)
230 3cr8_A Sulfate adenylyltranfer 97.6 1.6E-05 5.5E-10 77.9 2.2 30 74-104 365-394 (552)
231 1sxj_C Activator 1 40 kDa subu 97.6 3E-06 1E-10 77.4 -2.9 49 54-103 20-70 (340)
232 2pez_A Bifunctional 3'-phospho 97.6 3.1E-05 1E-09 63.8 3.5 26 76-102 3-28 (179)
233 1j8m_F SRP54, signal recogniti 97.6 1E-05 3.6E-10 73.2 0.5 58 54-115 76-135 (297)
234 2qz4_A Paraplegin; AAA+, SPG7, 97.6 0.00026 9E-09 61.2 9.5 25 76-101 37-61 (262)
235 1jjv_A Dephospho-COA kinase; P 97.6 3E-05 1E-09 65.2 3.3 22 80-102 4-25 (206)
236 3cmu_A Protein RECA, recombina 97.6 0.00018 6.2E-09 79.4 10.1 144 75-223 380-558 (2050)
237 1cke_A CK, MSSA, protein (cyti 97.6 3E-05 1E-09 66.0 3.1 24 78-102 5-28 (227)
238 3m6a_A ATP-dependent protease 97.6 2.5E-06 8.7E-11 83.4 -4.2 50 52-103 83-132 (543)
239 2ffh_A Protein (FFH); SRP54, s 97.6 2E-05 6.8E-10 74.9 2.0 56 55-115 79-135 (425)
240 3auy_A DNA double-strand break 97.5 6.5E-05 2.2E-09 69.6 5.0 43 52-99 2-45 (371)
241 2qag_A Septin-2, protein NEDD5 97.5 7E-06 2.4E-10 76.2 -1.8 44 52-102 17-60 (361)
242 2qor_A Guanylate kinase; phosp 97.5 3.7E-05 1.3E-09 64.9 2.8 27 74-101 8-34 (204)
243 1oix_A RAS-related protein RAB 97.5 4.3E-05 1.5E-09 63.6 3.0 23 80-103 31-53 (191)
244 4fcw_A Chaperone protein CLPB; 97.5 4.4E-05 1.5E-09 68.0 3.0 41 63-104 21-72 (311)
245 3bgw_A DNAB-like replicative h 97.5 0.00027 9.4E-09 67.3 8.5 121 68-190 187-318 (444)
246 3t34_A Dynamin-related protein 97.5 2.3E-05 7.7E-10 72.3 0.9 44 55-102 11-57 (360)
247 2if2_A Dephospho-COA kinase; a 97.5 5E-05 1.7E-09 63.7 3.0 21 80-101 3-23 (204)
248 1jbk_A CLPB protein; beta barr 97.5 0.00017 5.8E-09 58.4 5.9 40 154-193 114-162 (195)
249 2f9l_A RAB11B, member RAS onco 97.4 5.7E-05 2E-09 63.0 3.0 23 80-103 7-29 (199)
250 1g5t_A COB(I)alamin adenosyltr 97.4 0.00078 2.7E-08 57.3 9.9 129 76-217 27-179 (196)
251 1f6b_A SAR1; gtpases, N-termin 97.4 1.8E-05 6.1E-10 66.4 -0.6 41 59-101 6-47 (198)
252 3lxw_A GTPase IMAP family memb 97.4 0.00056 1.9E-08 59.7 8.9 22 80-102 23-44 (247)
253 1odf_A YGR205W, hypothetical 3 97.4 7.2E-05 2.5E-09 67.4 3.2 27 76-103 29-55 (290)
254 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.00021 7.3E-09 65.5 6.3 27 73-100 118-144 (331)
255 2v1u_A Cell division control p 97.4 0.00018 6.3E-09 65.4 5.7 26 76-102 42-67 (387)
256 1njg_A DNA polymerase III subu 97.4 4.5E-05 1.5E-09 64.0 1.5 21 80-101 47-67 (250)
257 3cm0_A Adenylate kinase; ATP-b 97.3 0.00011 3.6E-09 60.5 3.5 25 76-101 2-26 (186)
258 2yvu_A Probable adenylyl-sulfa 97.3 0.0001 3.5E-09 61.0 3.1 39 73-112 8-47 (186)
259 2p65_A Hypothetical protein PF 97.3 0.00019 6.6E-09 58.1 4.7 40 154-193 114-163 (187)
260 3lxx_A GTPase IMAP family memb 97.3 0.0005 1.7E-08 59.1 7.6 23 80-103 31-53 (239)
261 2www_A Methylmalonic aciduria 97.3 0.00017 5.9E-09 66.4 4.7 40 76-116 72-112 (349)
262 1m7g_A Adenylylsulfate kinase; 97.3 0.00012 4.1E-09 62.1 3.0 30 73-103 20-49 (211)
263 2gj8_A MNME, tRNA modification 97.3 0.00015 5E-09 59.2 3.5 26 76-102 2-27 (172)
264 2ga8_A Hypothetical 39.9 kDa p 97.3 3E-05 1E-09 72.0 -0.8 36 66-102 10-47 (359)
265 1q57_A DNA primase/helicase; d 97.3 0.00034 1.2E-08 67.3 6.6 143 74-217 238-441 (503)
266 1m2o_B GTP-binding protein SAR 97.3 0.00013 4.5E-09 60.5 3.0 34 66-101 12-45 (190)
267 3t61_A Gluconokinase; PSI-biol 97.2 0.00011 3.8E-09 61.6 2.6 24 78-102 18-41 (202)
268 3d8b_A Fidgetin-like protein 1 97.2 0.00088 3E-08 61.6 8.8 24 77-101 116-139 (357)
269 3dm5_A SRP54, signal recogniti 97.2 0.00096 3.3E-08 63.6 9.0 39 77-115 99-137 (443)
270 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.0018 6.2E-08 58.7 10.4 26 76-102 43-68 (322)
271 1ega_A Protein (GTP-binding pr 97.2 0.00014 4.7E-09 65.6 2.7 26 76-102 6-31 (301)
272 2r2a_A Uncharacterized protein 97.2 0.00088 3E-08 56.9 7.5 42 155-197 87-138 (199)
273 1sxj_D Activator 1 41 kDa subu 97.2 0.00012 4E-09 66.3 2.0 39 63-102 41-81 (353)
274 1q3t_A Cytidylate kinase; nucl 97.2 0.00019 6.3E-09 62.0 3.2 26 75-101 13-38 (236)
275 1xjc_A MOBB protein homolog; s 97.2 0.00031 1.1E-08 58.4 4.5 37 79-115 5-41 (169)
276 3hu3_A Transitional endoplasmi 97.2 0.00095 3.2E-08 64.3 8.4 26 75-101 235-260 (489)
277 1np6_A Molybdopterin-guanine d 97.2 0.00029 9.9E-09 58.7 4.2 34 79-113 7-41 (174)
278 4b4t_J 26S protease regulatory 97.1 0.00063 2.2E-08 64.1 6.8 30 70-102 176-205 (405)
279 4b4t_L 26S protease subunit RP 97.1 0.00077 2.6E-08 64.1 7.4 102 76-195 213-333 (437)
280 1ypw_A Transitional endoplasmi 97.1 4.2E-05 1.4E-09 78.1 -1.6 32 71-103 504-535 (806)
281 1qhx_A CPT, protein (chloramph 97.1 0.00026 8.9E-09 57.7 3.5 23 78-101 3-25 (178)
282 3kb2_A SPBC2 prophage-derived 97.1 0.00025 8.5E-09 57.2 3.2 21 80-101 3-23 (173)
283 3cmu_A Protein RECA, recombina 97.1 0.0011 3.7E-08 73.4 8.9 124 74-200 728-877 (2050)
284 4b4t_K 26S protease regulatory 97.1 0.00086 3E-08 63.6 7.2 23 79-102 207-229 (428)
285 2qp9_X Vacuolar protein sortin 97.1 0.0014 4.8E-08 60.3 8.4 25 77-102 83-107 (355)
286 2rhm_A Putative kinase; P-loop 97.1 0.00032 1.1E-08 57.8 3.5 25 76-101 3-27 (193)
287 2qgz_A Helicase loader, putati 97.1 0.00068 2.3E-08 61.3 5.9 34 78-112 152-187 (308)
288 3lw7_A Adenylate kinase relate 97.0 0.00032 1.1E-08 56.3 3.2 19 80-99 3-21 (179)
289 3eie_A Vacuolar protein sortin 97.0 0.0014 4.9E-08 59.1 7.7 25 77-102 50-74 (322)
290 3vfd_A Spastin; ATPase, microt 97.0 0.0043 1.5E-07 57.4 11.0 24 77-101 147-170 (389)
291 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.0029 1E-07 55.4 9.3 25 76-101 2-26 (260)
292 1kht_A Adenylate kinase; phosp 97.0 0.00039 1.3E-08 57.0 3.3 23 78-101 3-25 (192)
293 4b4t_I 26S protease regulatory 97.0 0.00093 3.2E-08 63.4 6.3 23 79-102 217-239 (437)
294 4b4t_M 26S protease regulatory 97.0 0.00084 2.9E-08 63.8 5.9 27 75-102 212-238 (434)
295 2p5t_B PEZT; postsegregational 97.0 0.00025 8.5E-09 62.0 2.0 27 74-101 28-54 (253)
296 2ze6_A Isopentenyl transferase 96.9 0.00042 1.4E-08 60.8 3.3 22 79-101 2-23 (253)
297 2wjg_A FEOB, ferrous iron tran 96.9 0.00047 1.6E-08 56.2 3.3 21 80-101 9-29 (188)
298 2chg_A Replication factor C sm 96.9 0.0015 5E-08 54.0 6.3 21 80-101 40-60 (226)
299 1vht_A Dephospho-COA kinase; s 96.9 0.00059 2E-08 57.8 3.7 24 77-101 3-26 (218)
300 2zan_A Vacuolar protein sortin 96.9 0.0034 1.2E-07 59.5 9.3 26 76-102 165-190 (444)
301 2r62_A Cell division protease 96.9 0.00016 5.4E-09 63.2 -0.0 30 69-101 37-66 (268)
302 3iij_A Coilin-interacting nucl 96.9 0.00033 1.1E-08 57.4 1.9 24 76-100 9-32 (180)
303 2zej_A Dardarin, leucine-rich 96.9 0.00052 1.8E-08 56.3 3.1 22 80-102 4-25 (184)
304 2jaq_A Deoxyguanosine kinase; 96.8 0.00057 1.9E-08 56.6 3.3 21 80-101 2-22 (205)
305 1d2n_A N-ethylmaleimide-sensit 96.8 0.0027 9.1E-08 55.6 7.8 26 76-102 62-87 (272)
306 3trf_A Shikimate kinase, SK; a 96.8 0.00059 2E-08 56.0 3.3 23 78-101 5-27 (185)
307 3t15_A Ribulose bisphosphate c 96.8 0.0014 4.8E-08 58.6 6.0 23 79-102 37-59 (293)
308 2v54_A DTMP kinase, thymidylat 96.8 0.00063 2.2E-08 56.6 3.5 24 77-101 3-26 (204)
309 3pfi_A Holliday junction ATP-d 96.8 0.0072 2.5E-07 54.3 10.7 21 80-101 57-77 (338)
310 3e1s_A Exodeoxyribonuclease V, 96.8 0.00043 1.5E-08 68.1 2.5 38 77-115 203-241 (574)
311 1ly1_A Polynucleotide kinase; 96.8 0.00065 2.2E-08 55.1 3.3 22 79-101 3-24 (181)
312 1uf9_A TT1252 protein; P-loop, 96.8 0.00073 2.5E-08 56.0 3.6 24 78-102 8-31 (203)
313 1via_A Shikimate kinase; struc 96.8 0.00054 1.8E-08 56.0 2.7 21 80-101 6-26 (175)
314 2plr_A DTMP kinase, probable t 96.8 0.00077 2.6E-08 56.1 3.7 24 77-101 3-26 (213)
315 3syl_A Protein CBBX; photosynt 96.8 0.0088 3E-07 52.9 10.8 25 77-102 66-90 (309)
316 1gvn_B Zeta; postsegregational 96.8 0.00064 2.2E-08 60.9 3.3 26 75-101 30-55 (287)
317 4b4t_H 26S protease regulatory 96.8 0.0013 4.4E-08 63.0 5.5 26 76-102 241-266 (467)
318 2c95_A Adenylate kinase 1; tra 96.8 0.00071 2.4E-08 55.8 3.2 25 76-101 7-31 (196)
319 2wwf_A Thymidilate kinase, put 96.8 0.00075 2.6E-08 56.5 3.4 25 76-101 8-32 (212)
320 3r20_A Cytidylate kinase; stru 96.8 0.00069 2.4E-08 59.1 3.3 23 78-101 9-31 (233)
321 1tev_A UMP-CMP kinase; ploop, 96.8 0.00084 2.9E-08 55.1 3.6 23 78-101 3-25 (196)
322 2v3c_C SRP54, signal recogniti 96.8 0.0018 6.3E-08 61.4 6.3 42 73-115 92-136 (432)
323 1nn5_A Similar to deoxythymidy 96.7 0.00079 2.7E-08 56.4 3.3 26 75-101 6-31 (215)
324 1ex7_A Guanylate kinase; subst 96.7 0.00073 2.5E-08 56.9 3.0 19 81-100 4-22 (186)
325 2qby_B CDC6 homolog 3, cell di 96.7 0.0012 4.1E-08 60.2 4.7 23 78-101 45-67 (384)
326 1gtv_A TMK, thymidylate kinase 96.7 0.00039 1.3E-08 58.3 1.3 32 80-112 2-34 (214)
327 4ag6_A VIRB4 ATPase, type IV s 96.7 0.0017 5.7E-08 60.3 5.6 63 154-217 261-334 (392)
328 1sxj_A Activator 1 95 kDa subu 96.7 0.0022 7.4E-08 61.9 6.3 108 78-193 77-190 (516)
329 1nks_A Adenylate kinase; therm 96.6 0.001 3.4E-08 54.5 3.2 21 80-101 3-23 (194)
330 2vli_A Antibiotic resistance p 96.6 0.00068 2.3E-08 55.4 2.1 25 76-101 3-27 (183)
331 2bwj_A Adenylate kinase 5; pho 96.6 0.00038 1.3E-08 57.6 0.5 26 75-101 9-34 (199)
332 2cjw_A GTP-binding protein GEM 96.6 0.0028 9.7E-08 52.4 5.9 21 80-101 8-28 (192)
333 3cf2_A TER ATPase, transitiona 96.6 0.0023 7.7E-08 65.3 6.2 99 79-195 239-353 (806)
334 3co5_A Putative two-component 96.6 0.004 1.4E-07 49.4 6.4 24 77-101 26-49 (143)
335 3u61_B DNA polymerase accessor 96.6 0.01 3.5E-07 53.0 9.8 93 80-194 50-148 (324)
336 3pvs_A Replication-associated 96.6 0.0018 6.1E-08 61.7 4.9 32 70-102 40-73 (447)
337 4dcu_A GTP-binding protein ENG 96.6 0.0039 1.3E-07 59.2 7.1 21 80-101 25-45 (456)
338 1aky_A Adenylate kinase; ATP:A 96.5 0.0014 4.7E-08 55.6 3.5 24 77-101 3-26 (220)
339 2z0h_A DTMP kinase, thymidylat 96.5 0.0013 4.5E-08 54.2 3.2 21 80-101 2-22 (197)
340 3uk6_A RUVB-like 2; hexameric 96.5 0.0065 2.2E-07 55.1 8.2 26 76-102 68-93 (368)
341 1w5s_A Origin recognition comp 96.5 0.0034 1.2E-07 57.6 6.4 24 77-101 49-74 (412)
342 3ake_A Cytidylate kinase; CMP 96.5 0.0013 4.4E-08 54.7 3.0 21 80-101 4-24 (208)
343 1ksh_A ARF-like protein 2; sma 96.5 0.034 1.2E-06 44.8 11.5 109 77-195 17-132 (186)
344 1zd8_A GTP:AMP phosphotransfer 96.4 0.0015 5.1E-08 55.7 3.2 25 76-101 5-29 (227)
345 2qmh_A HPR kinase/phosphorylas 96.4 0.0028 9.5E-08 54.2 4.7 35 63-98 20-54 (205)
346 1ukz_A Uridylate kinase; trans 96.4 0.0018 6.3E-08 53.9 3.5 23 77-100 14-36 (203)
347 1ko7_A HPR kinase/phosphatase; 96.4 0.0026 9E-08 57.9 4.7 36 63-99 130-165 (314)
348 1zak_A Adenylate kinase; ATP:A 96.4 0.0014 4.8E-08 55.6 2.7 24 77-101 4-27 (222)
349 2pbr_A DTMP kinase, thymidylat 96.4 0.0017 5.9E-08 53.2 3.2 21 80-101 2-22 (195)
350 3k53_A Ferrous iron transport 96.4 0.0016 5.6E-08 57.2 3.2 22 80-102 5-26 (271)
351 2cdn_A Adenylate kinase; phosp 96.4 0.0019 6.5E-08 53.8 3.4 24 77-101 19-42 (201)
352 1zuh_A Shikimate kinase; alpha 96.4 0.0018 6.3E-08 52.3 3.2 22 79-101 8-29 (168)
353 1qf9_A UMP/CMP kinase, protein 96.4 0.002 6.7E-08 52.7 3.4 23 78-101 6-28 (194)
354 3fb4_A Adenylate kinase; psych 96.4 0.0018 6.1E-08 54.5 3.2 20 80-100 2-21 (216)
355 1e6c_A Shikimate kinase; phosp 96.3 0.0017 5.8E-08 52.4 2.7 22 79-101 3-24 (173)
356 1qvr_A CLPB protein; coiled co 96.3 0.011 3.8E-07 60.5 9.3 25 79-104 589-613 (854)
357 2qtf_A Protein HFLX, GTP-bindi 96.3 0.0018 6.1E-08 60.1 3.1 23 80-103 181-203 (364)
358 2pt5_A Shikimate kinase, SK; a 96.3 0.0022 7.7E-08 51.5 3.3 21 80-101 2-22 (168)
359 1mky_A Probable GTP-binding pr 96.3 0.0019 6.7E-08 61.0 3.3 23 79-102 181-203 (439)
360 3dl0_A Adenylate kinase; phosp 96.3 0.0021 7.3E-08 54.1 3.2 20 80-100 2-21 (216)
361 2iyv_A Shikimate kinase, SK; t 96.3 0.0017 5.7E-08 53.3 2.4 22 79-101 3-24 (184)
362 2ohf_A Protein OLA1, GTP-bindi 96.3 0.0016 5.5E-08 61.1 2.6 28 74-102 18-45 (396)
363 1qvr_A CLPB protein; coiled co 96.3 0.011 3.9E-07 60.3 9.2 23 79-102 192-214 (854)
364 1uj2_A Uridine-cytidine kinase 96.2 0.0025 8.4E-08 55.4 3.2 22 79-101 23-44 (252)
365 2grj_A Dephospho-COA kinase; T 96.2 0.0026 8.8E-08 53.6 3.2 23 78-101 12-34 (192)
366 3tlx_A Adenylate kinase 2; str 96.2 0.0031 1.1E-07 54.7 3.7 24 76-100 27-50 (243)
367 1sxj_B Activator 1 37 kDa subu 96.2 0.0081 2.8E-07 53.1 6.5 20 81-101 45-64 (323)
368 1hqc_A RUVB; extended AAA-ATPa 96.2 0.016 5.6E-07 51.4 8.5 23 78-101 38-60 (324)
369 1jr3_A DNA polymerase III subu 96.2 0.018 6E-07 52.1 8.8 21 80-101 40-60 (373)
370 3nbx_X ATPase RAVA; AAA+ ATPas 96.1 0.002 6.7E-08 62.3 2.3 40 63-103 26-65 (500)
371 1r6b_X CLPA protein; AAA+, N-t 96.1 0.016 5.4E-07 58.3 9.1 23 80-103 490-512 (758)
372 2ged_A SR-beta, signal recogni 96.1 0.0029 9.9E-08 51.7 3.1 23 79-102 49-71 (193)
373 2xb4_A Adenylate kinase; ATP-b 96.1 0.003 1E-07 53.9 3.3 21 80-101 2-22 (223)
374 3pxi_A Negative regulator of g 96.1 0.03 1E-06 56.4 10.9 23 80-103 523-545 (758)
375 1fzq_A ADP-ribosylation factor 96.0 0.003 1E-07 51.6 2.8 22 79-101 17-38 (181)
376 3q72_A GTP-binding protein RAD 96.0 0.003 1E-07 50.0 2.8 22 80-102 4-25 (166)
377 2f6r_A COA synthase, bifunctio 96.0 0.0032 1.1E-07 56.0 3.2 22 78-100 75-96 (281)
378 3tqf_A HPR(Ser) kinase; transf 96.0 0.007 2.4E-07 50.6 5.0 34 65-99 4-37 (181)
379 2nzj_A GTP-binding protein REM 96.0 0.0036 1.2E-07 50.0 3.1 22 80-102 6-27 (175)
380 1z2a_A RAS-related protein RAB 96.0 0.0032 1.1E-07 49.8 2.8 21 80-101 7-27 (168)
381 2bjv_A PSP operon transcriptio 96.0 0.024 8.3E-07 49.1 8.6 25 77-102 28-52 (265)
382 1w36_D RECD, exodeoxyribonucle 96.0 0.0081 2.8E-07 59.2 6.2 19 77-95 163-181 (608)
383 2dyk_A GTP-binding protein; GT 96.0 0.0034 1.2E-07 49.3 2.8 21 80-101 3-23 (161)
384 1kao_A RAP2A; GTP-binding prot 96.0 0.0035 1.2E-07 49.3 2.8 21 80-101 5-25 (167)
385 2ce2_X GTPase HRAS; signaling 96.0 0.0033 1.1E-07 49.3 2.7 21 80-101 5-25 (166)
386 3be4_A Adenylate kinase; malar 96.0 0.0035 1.2E-07 53.2 3.0 24 77-101 4-27 (217)
387 2erx_A GTP-binding protein DI- 96.0 0.0039 1.3E-07 49.4 3.1 21 80-101 5-25 (172)
388 3tw8_B RAS-related protein RAB 95.9 0.0039 1.3E-07 49.9 2.9 21 80-101 11-31 (181)
389 3q85_A GTP-binding protein REM 95.9 0.0041 1.4E-07 49.4 3.0 21 80-101 4-24 (169)
390 1e4v_A Adenylate kinase; trans 95.9 0.004 1.4E-07 52.5 3.1 21 80-101 2-22 (214)
391 1moz_A ARL1, ADP-ribosylation 95.9 0.0028 9.5E-08 51.2 2.0 24 77-101 17-40 (183)
392 1u8z_A RAS-related protein RAL 95.9 0.0038 1.3E-07 49.1 2.8 21 80-101 6-26 (168)
393 1z0j_A RAB-22, RAS-related pro 95.9 0.0039 1.3E-07 49.4 2.8 21 80-101 8-28 (170)
394 1ky3_A GTP-binding protein YPT 95.9 0.0039 1.3E-07 50.0 2.8 21 80-101 10-30 (182)
395 1ek0_A Protein (GTP-binding pr 95.9 0.0039 1.3E-07 49.3 2.8 21 80-101 5-25 (170)
396 1g16_A RAS-related protein SEC 95.9 0.0038 1.3E-07 49.4 2.7 21 80-101 5-25 (170)
397 1a7j_A Phosphoribulokinase; tr 95.9 0.0021 7.2E-08 57.6 1.2 24 77-101 4-27 (290)
398 3b1v_A Ferrous iron uptake tra 95.9 0.0045 1.5E-07 54.9 3.3 22 80-102 5-26 (272)
399 1z08_A RAS-related protein RAB 95.9 0.0041 1.4E-07 49.3 2.8 21 80-101 8-28 (170)
400 2lkc_A Translation initiation 95.9 0.0053 1.8E-07 49.1 3.5 24 77-101 7-30 (178)
401 1c1y_A RAS-related protein RAP 95.8 0.0043 1.5E-07 49.0 2.8 21 80-101 5-25 (167)
402 1wms_A RAB-9, RAB9, RAS-relate 95.8 0.0043 1.5E-07 49.6 2.8 21 80-101 9-29 (177)
403 1ltq_A Polynucleotide kinase; 95.8 0.005 1.7E-07 54.5 3.5 22 79-101 3-24 (301)
404 1ak2_A Adenylate kinase isoenz 95.8 0.0053 1.8E-07 52.6 3.5 24 77-101 15-38 (233)
405 2fn4_A P23, RAS-related protei 95.8 0.0044 1.5E-07 49.6 2.7 21 80-101 11-31 (181)
406 1svi_A GTP-binding protein YSX 95.8 0.0047 1.6E-07 50.4 3.0 21 80-101 25-45 (195)
407 3pqc_A Probable GTP-binding pr 95.8 0.0048 1.6E-07 50.1 3.0 21 80-101 25-45 (195)
408 2cxx_A Probable GTP-binding pr 95.8 0.0044 1.5E-07 50.2 2.7 21 80-101 3-23 (190)
409 3upu_A ATP-dependent DNA helic 95.8 0.012 4.2E-07 55.7 6.2 39 154-193 127-166 (459)
410 4edh_A DTMP kinase, thymidylat 95.8 0.006 2.1E-07 52.2 3.7 34 76-110 4-38 (213)
411 3zvl_A Bifunctional polynucleo 95.8 0.0049 1.7E-07 57.9 3.3 27 74-101 254-280 (416)
412 3v9p_A DTMP kinase, thymidylat 95.7 0.0043 1.5E-07 53.7 2.7 26 75-101 22-47 (227)
413 3ihw_A Centg3; RAS, centaurin, 95.7 0.0058 2E-07 50.1 3.3 22 80-101 22-43 (184)
414 1r2q_A RAS-related protein RAB 95.7 0.0051 1.8E-07 48.5 2.8 21 80-101 8-28 (170)
415 3clv_A RAB5 protein, putative; 95.7 0.0051 1.7E-07 50.0 2.8 21 80-101 9-29 (208)
416 3d3q_A TRNA delta(2)-isopenten 95.7 0.0053 1.8E-07 56.4 3.2 22 79-101 8-29 (340)
417 2hxs_A RAB-26, RAS-related pro 95.7 0.0059 2E-07 48.9 3.1 21 80-101 8-28 (178)
418 2wsm_A Hydrogenase expression/ 95.7 0.0085 2.9E-07 50.2 4.2 34 79-113 31-64 (221)
419 4dsu_A GTPase KRAS, isoform 2B 95.7 0.0053 1.8E-07 49.6 2.8 21 80-101 6-26 (189)
420 2oil_A CATX-8, RAS-related pro 95.7 0.0052 1.8E-07 50.2 2.8 21 80-101 27-47 (193)
421 3a8t_A Adenylate isopentenyltr 95.7 0.0066 2.3E-07 55.8 3.7 24 77-101 39-62 (339)
422 3bc1_A RAS-related protein RAB 95.7 0.0053 1.8E-07 49.6 2.8 21 80-101 13-33 (195)
423 3t1o_A Gliding protein MGLA; G 95.7 0.0053 1.8E-07 49.8 2.8 22 80-102 16-37 (198)
424 1upt_A ARL1, ADP-ribosylation 95.7 0.0055 1.9E-07 48.6 2.8 22 79-101 8-29 (171)
425 3umf_A Adenylate kinase; rossm 95.6 0.0058 2E-07 52.6 3.0 27 74-101 25-51 (217)
426 2y8e_A RAB-protein 6, GH09086P 95.6 0.0056 1.9E-07 48.9 2.7 21 80-101 16-36 (179)
427 1r8s_A ADP-ribosylation factor 95.6 0.006 2E-07 48.1 2.8 20 81-101 3-22 (164)
428 2ocp_A DGK, deoxyguanosine kin 95.6 0.0076 2.6E-07 51.8 3.6 24 77-101 1-24 (241)
429 3lv8_A DTMP kinase, thymidylat 95.6 0.007 2.4E-07 52.7 3.3 31 77-108 26-57 (236)
430 2a9k_A RAS-related protein RAL 95.6 0.0061 2.1E-07 49.0 2.8 21 80-101 20-40 (187)
431 1z0f_A RAB14, member RAS oncog 95.6 0.0062 2.1E-07 48.6 2.8 21 80-101 17-37 (179)
432 1ojl_A Transcriptional regulat 95.5 0.029 1E-06 50.2 7.5 26 76-102 23-48 (304)
433 3cbq_A GTP-binding protein REM 95.5 0.0057 2E-07 50.7 2.6 21 80-101 25-45 (195)
434 2g6b_A RAS-related protein RAB 95.5 0.0064 2.2E-07 48.7 2.8 21 80-101 12-32 (180)
435 2h92_A Cytidylate kinase; ross 95.5 0.0062 2.1E-07 51.2 2.7 23 78-101 3-25 (219)
436 3con_A GTPase NRAS; structural 95.5 0.0065 2.2E-07 49.4 2.8 21 80-101 23-43 (190)
437 4tmk_A Protein (thymidylate ki 95.5 0.0079 2.7E-07 51.5 3.4 24 77-101 2-25 (213)
438 1a5t_A Delta prime, HOLB; zinc 95.5 0.02 6.7E-07 51.9 6.2 21 80-101 26-46 (334)
439 2efe_B Small GTP-binding prote 95.5 0.0069 2.4E-07 48.6 2.8 21 80-101 14-34 (181)
440 1nrj_B SR-beta, signal recogni 95.5 0.0072 2.5E-07 50.5 3.0 21 80-101 14-34 (218)
441 2bme_A RAB4A, RAS-related prot 95.5 0.0065 2.2E-07 49.0 2.7 21 80-101 12-32 (186)
442 2bov_A RAla, RAS-related prote 95.5 0.0068 2.3E-07 49.8 2.8 21 80-101 16-36 (206)
443 1m7b_A RND3/RHOE small GTP-bin 95.4 0.0068 2.3E-07 49.3 2.7 21 80-101 9-29 (184)
444 3ld9_A DTMP kinase, thymidylat 95.4 0.0094 3.2E-07 51.5 3.7 25 76-101 19-43 (223)
445 1vg8_A RAS-related protein RAB 95.4 0.0071 2.4E-07 49.8 2.8 21 80-101 10-30 (207)
446 2iut_A DNA translocase FTSK; n 95.4 0.056 1.9E-06 53.0 9.4 32 71-102 207-238 (574)
447 3crm_A TRNA delta(2)-isopenten 95.4 0.008 2.7E-07 54.9 3.3 22 79-101 6-27 (323)
448 1p5z_B DCK, deoxycytidine kina 95.4 0.006 2E-07 53.2 2.4 25 76-101 22-46 (263)
449 2xtp_A GTPase IMAP family memb 95.4 0.0083 2.8E-07 51.9 3.2 22 80-102 24-45 (260)
450 3tmk_A Thymidylate kinase; pho 95.4 0.0088 3E-07 51.4 3.3 25 76-101 3-27 (216)
451 3exa_A TRNA delta(2)-isopenten 95.4 0.0097 3.3E-07 54.2 3.7 22 78-100 3-24 (322)
452 1mh1_A RAC1; GTP-binding, GTPa 95.4 0.0078 2.7E-07 48.4 2.8 21 80-101 7-27 (186)
453 2gf0_A GTP-binding protein DI- 95.4 0.0076 2.6E-07 49.2 2.7 21 80-101 10-30 (199)
454 3p32_A Probable GTPase RV1496/ 95.4 0.013 4.3E-07 53.8 4.5 39 77-115 78-116 (355)
455 2gf9_A RAS-related protein RAB 95.4 0.0078 2.7E-07 49.1 2.8 21 80-101 24-44 (189)
456 1sky_E F1-ATPase, F1-ATP synth 95.4 0.0079 2.7E-07 57.7 3.1 33 67-101 141-173 (473)
457 2fg5_A RAB-22B, RAS-related pr 95.3 0.0078 2.7E-07 49.3 2.7 21 80-101 25-45 (192)
458 3kkq_A RAS-related protein M-R 95.3 0.0081 2.8E-07 48.4 2.8 21 80-101 20-40 (183)
459 3tkl_A RAS-related protein RAB 95.3 0.0081 2.8E-07 48.9 2.8 21 80-101 18-38 (196)
460 2h57_A ADP-ribosylation factor 95.3 0.0076 2.6E-07 49.2 2.6 22 80-102 23-44 (190)
461 2il1_A RAB12; G-protein, GDP, 95.3 0.0088 3E-07 49.1 2.9 21 80-101 28-48 (192)
462 2dby_A GTP-binding protein; GD 95.3 0.0077 2.6E-07 55.9 2.8 21 81-102 4-24 (368)
463 1zbd_A Rabphilin-3A; G protein 95.3 0.0094 3.2E-07 49.1 3.0 21 80-101 10-30 (203)
464 1wf3_A GTP-binding protein; GT 95.3 0.0096 3.3E-07 53.5 3.3 22 80-102 9-30 (301)
465 3t5g_A GTP-binding protein RHE 95.3 0.0085 2.9E-07 48.2 2.7 20 80-100 8-27 (181)
466 2o52_A RAS-related protein RAB 95.3 0.0094 3.2E-07 49.3 3.0 21 80-101 27-47 (200)
467 3iby_A Ferrous iron transport 95.2 0.01 3.4E-07 52.0 3.2 22 80-102 3-24 (256)
468 3vkw_A Replicase large subunit 95.2 0.018 6.1E-07 54.8 5.1 26 72-97 155-180 (446)
469 1z06_A RAS-related protein RAB 95.2 0.0094 3.2E-07 48.6 2.8 21 80-101 22-42 (189)
470 2a5j_A RAS-related protein RAB 95.2 0.0092 3.1E-07 48.8 2.8 21 80-101 23-43 (191)
471 1zj6_A ADP-ribosylation factor 95.2 0.0099 3.4E-07 48.3 2.9 22 79-101 17-38 (187)
472 3oes_A GTPase rhebl1; small GT 95.2 0.0088 3E-07 49.4 2.7 21 80-101 26-46 (201)
473 3t5d_A Septin-7; GTP-binding p 95.2 0.0091 3.1E-07 52.5 2.9 22 80-102 10-31 (274)
474 3dz8_A RAS-related protein RAB 95.2 0.009 3.1E-07 48.8 2.7 22 80-102 25-46 (191)
475 4bas_A ADP-ribosylation factor 95.2 0.01 3.5E-07 48.4 3.0 21 80-101 19-39 (199)
476 4dhe_A Probable GTP-binding pr 95.2 0.0063 2.2E-07 50.9 1.7 22 80-102 31-52 (223)
477 2ew1_A RAS-related protein RAB 95.2 0.0091 3.1E-07 49.9 2.7 21 80-101 28-48 (201)
478 2bcg_Y Protein YP2, GTP-bindin 95.2 0.0093 3.2E-07 49.3 2.7 21 80-101 10-30 (206)
479 1knx_A Probable HPR(Ser) kinas 95.1 0.011 3.9E-07 53.6 3.3 39 60-99 130-168 (312)
480 3iev_A GTP-binding protein ERA 95.1 0.011 3.8E-07 53.1 3.3 23 79-102 11-33 (308)
481 2hf9_A Probable hydrogenase ni 95.1 0.015 5.1E-07 48.9 3.9 23 79-101 39-61 (226)
482 2atv_A RERG, RAS-like estrogen 95.1 0.01 3.6E-07 48.6 2.8 21 80-101 30-50 (196)
483 2h17_A ADP-ribosylation factor 95.1 0.0094 3.2E-07 48.3 2.5 21 80-101 23-43 (181)
484 1x3s_A RAS-related protein RAB 95.1 0.01 3.6E-07 48.1 2.8 21 80-101 17-37 (195)
485 2qu8_A Putative nucleolar GTP- 95.1 0.011 3.8E-07 50.0 3.0 21 80-101 31-51 (228)
486 3sr0_A Adenylate kinase; phosp 95.1 0.012 4.1E-07 50.0 3.2 21 80-101 2-22 (206)
487 2p5s_A RAS and EF-hand domain 95.1 0.011 3.6E-07 48.8 2.8 21 80-101 30-50 (199)
488 3reg_A RHO-like small GTPase; 95.1 0.011 3.6E-07 48.5 2.8 21 80-101 25-45 (194)
489 1zd9_A ADP-ribosylation factor 95.1 0.011 3.6E-07 48.3 2.8 21 80-101 24-44 (188)
490 1bif_A 6-phosphofructo-2-kinas 95.1 0.11 3.6E-06 49.4 10.0 24 77-101 38-61 (469)
491 3cph_A RAS-related protein SEC 95.1 0.011 3.7E-07 48.9 2.8 22 79-101 21-42 (213)
492 2iwr_A Centaurin gamma 1; ANK 95.0 0.0084 2.9E-07 48.1 2.0 21 80-101 9-29 (178)
493 1jal_A YCHF protein; nucleotid 95.0 0.011 3.9E-07 54.7 3.1 23 78-101 2-24 (363)
494 3bwd_D RAC-like GTP-binding pr 95.0 0.013 4.6E-07 46.9 3.2 21 80-101 10-30 (182)
495 2q3h_A RAS homolog gene family 95.0 0.012 4.2E-07 48.3 3.0 21 80-101 22-42 (201)
496 3foz_A TRNA delta(2)-isopenten 95.0 0.015 5E-07 52.9 3.7 22 78-100 10-31 (316)
497 3llu_A RAS-related GTP-binding 95.0 0.012 4.1E-07 48.4 3.0 21 80-101 22-42 (196)
498 1r6b_X CLPA protein; AAA+, N-t 95.0 0.082 2.8E-06 53.0 9.6 26 76-102 205-230 (758)
499 2f7s_A C25KG, RAS-related prot 95.0 0.013 4.3E-07 48.9 3.1 22 80-102 27-48 (217)
500 3a1s_A Iron(II) transport prot 95.0 0.013 4.5E-07 51.3 3.3 22 80-102 7-28 (258)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.8e-33 Score=263.43 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=125.1
Q ss_pred CCccEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------
Q 023563 49 IHSMVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------- 116 (280)
Q Consensus 49 ~~~~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------- 116 (280)
..+||+++||+|+|++ ..+|+||||+|++||++||+||||||||||+ ++|+|+.. ....|.+...+.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLl-r~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLI-RCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHH-HHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 3468999999999963 5699999999999999999999999999999 99999832 122222111100
Q ss_pred --ccccccceeeeecccccc---------------------------cccccCchHHHHHH--------------hhhhc
Q 023563 117 --DTRYGLDSIVTHDGVKLP---------------------------CCALTTLSSFRQKF--------------GSDAY 153 (280)
Q Consensus 117 --~~~~~~~~v~~~~~~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~ 153 (280)
..+..+++++|....... .+...++.++.+++ |+||+
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh
Confidence 012334455543221111 11112222222211 67999
Q ss_pred cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563 154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~ 226 (280)
.+|++|||||||+.+ .++++|++++++.|+|||+||||++++.+ +||||++|++ ++++.|+++
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~----------~aDrv~vl~~G~iv~~g~~~ 249 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR----------ICDCVAVISNGELIEQDTVS 249 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH----------HCSEEEEEETTEEEECCBHH
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEEcCHH
Confidence 999999999997654 58999999987779999999999999987 9999999999 999999999
Q ss_pred eeee
Q 023563 227 FFTL 230 (280)
Q Consensus 227 ~~~~ 230 (280)
+++.
T Consensus 250 ev~~ 253 (366)
T 3tui_C 250 EVFS 253 (366)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 9873
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.1e-33 Score=256.08 Aligned_cols=168 Identities=14% Similarity=0.145 Sum_probs=121.2
Q ss_pred CccEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--------ccc
Q 023563 50 HSMVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--------DTR 119 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--------~~~ 119 (280)
+++|+++||+++|++ ..+|+||||+|++||+++|+||||||||||+ ++|+|+.. ....|.+..... ..+
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl-~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLF-QNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEECCCSHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCeEEEECCEECCcccccHHHHh
Confidence 358999999999975 5699999999999999999999999999999 99999732 111221111100 011
Q ss_pred cccceeeeecc-ccc---------------------------ccccccCchHHHHHH--------------hhhhccCCC
Q 023563 120 YGLDSIVTHDG-VKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVD 157 (280)
Q Consensus 120 ~~~~~v~~~~~-~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~ 157 (280)
..+++++|... ..+ ..+...++.++.++. |+||+.+|+
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~ 163 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPK 163 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 22333333211 000 011122222222211 678999999
Q ss_pred EEEEeCcccHH------HHHHHHHHHH-hhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFFE------DLYDFCREAA-DHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~~------~i~~~l~~l~-~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+||||||++.+ .++++|++++ ++ |+|||++|||++++.+ +||+|++|++ ++++.|+++++.
T Consensus 164 lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~----------~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 164 VLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPL----------YCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGG----------GCSEEEEEETTEEEEEECHHHHT
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEECCHHHHh
Confidence 99999997654 5889999997 55 9999999999999986 9999999999 999999999886
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.2e-33 Score=261.27 Aligned_cols=170 Identities=19% Similarity=0.166 Sum_probs=125.7
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecC-Ccccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKS-NKDTRYG 121 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~-~~~~~~~ 121 (280)
++|+++||+|+|+++.+|+||||+|++||+++|+||||||||||+ ++|+|+.. +|+++..... ....+..
T Consensus 3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLL-RCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHH-HHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred cEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHH-HHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 379999999999999999999999999999999999999999999 99999832 3443311000 0111234
Q ss_pred cceeeeecccccc---------------------------cccccCchHHHHHH--------------hhhhccCCCEEE
Q 023563 122 LDSIVTHDGVKLP---------------------------CCALTTLSSFRQKF--------------GSDAYDQVDVIG 160 (280)
Q Consensus 122 ~~~v~~~~~~~~~---------------------------~~~~~~l~~~~~~~--------------a~aL~~~p~lLl 160 (280)
+++++|....... .+...++.++.+++ |+||+.+|++||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLL 161 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELIL 161 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 5555553221100 01111222222211 679999999999
Q ss_pred EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563 161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR 231 (280)
Q Consensus 161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~ 231 (280)
||||++.+ ++++.|.++.++.|+|+|+||||++++.+ +||||++|++ +++..|+++++..+
T Consensus 162 LDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~----------~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 162 LDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQ----------YADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH----------HCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99997654 47777777776679999999999999986 9999999999 99999999988643
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.6e-33 Score=262.73 Aligned_cols=169 Identities=18% Similarity=0.150 Sum_probs=124.5
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Ccccccccceee
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NKDTRYGLDSIV 126 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~~~~~~~~~v~ 126 (280)
+|+++||+|+|+++.+|+||||+|++||+++|+||||||||||+ ++|+|+.. ....|.+-.. ....+..+++++
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLL-RMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHH-HHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 69999999999999999999999999999999999999999999 99999832 1112211110 011122334444
Q ss_pred eeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563 127 THDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ 165 (280)
Q Consensus 127 ~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~ 165 (280)
|...+.. ..+...++..+.+++ |+||+.+|++||||||+
T Consensus 82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPt 161 (381)
T 3rlf_A 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (381)
T ss_dssp TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4221110 011122232222221 67999999999999997
Q ss_pred cH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563 166 FF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR 231 (280)
Q Consensus 166 ~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~ 231 (280)
+. .++++.|+++.++.|+|+|+||||++++.+ +||||++|++ +++..|+++++..+
T Consensus 162 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~----------~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 162 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMT----------LADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH----------hCCEEEEEECCEEEEEeCHHHHHhC
Confidence 64 458899999987779999999999999986 9999999999 99999999988643
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.98 E-value=9.8e-33 Score=248.01 Aligned_cols=167 Identities=19% Similarity=0.189 Sum_probs=123.3
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------------
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK------------- 116 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~------------- 116 (280)
++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+ ++|+|+.. ....|.+.....
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl-k~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFL-RCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 479999999999999999999999999999999999999999999 99999832 112221111000
Q ss_pred ------ccccccceeeeeccc----------------------------ccccccccCchHH-HHHH-------------
Q 023563 117 ------DTRYGLDSIVTHDGV----------------------------KLPCCALTTLSSF-RQKF------------- 148 (280)
Q Consensus 117 ------~~~~~~~~v~~~~~~----------------------------~~~~~~~~~l~~~-~~~~------------- 148 (280)
..+..+++++|.... ....+...++.++ .++.
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~ 163 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS 163 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHH
Confidence 001122333332110 0011223344444 3322
Q ss_pred -hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563 149 -GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE 220 (280)
Q Consensus 149 -a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~ 220 (280)
|+||+.+|++||||||++.+ .++++|++++++ |+|||++|||++++.+ +||+|++|++ +++
T Consensus 164 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~----------~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 164 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARH----------VSSHVIFLHQGKIE 232 (262)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHH----------HCSEEEEEETTEEE
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEE
Confidence 67899999999999997654 588999999876 9999999999999986 9999999999 999
Q ss_pred cccCcceee
Q 023563 221 FCGKRAFFT 229 (280)
Q Consensus 221 ~~g~~~~~~ 229 (280)
+.|+++++.
T Consensus 233 ~~g~~~~~~ 241 (262)
T 1b0u_A 233 EEGDPEQVF 241 (262)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHH
Confidence 999988876
No 6
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.98 E-value=2.9e-33 Score=252.03 Aligned_cols=168 Identities=18% Similarity=0.203 Sum_probs=121.5
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCee-------------------EE
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRN-------------------VA 110 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~-------------------i~ 110 (280)
++|+++|++++|+++.+|+||||+|++||+++|+||||||||||+ ++|+|+.. .... ++
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLL-RLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHH-HHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 489999999999999999999999999999999999999999999 99999842 2222 33
Q ss_pred EecCCcccccc--cceeeee--cc--------cccccccccCchHHHHH--------------Hhhhhcc------CCCE
Q 023563 111 VIKSNKDTRYG--LDSIVTH--DG--------VKLPCCALTTLSSFRQK--------------FGSDAYD------QVDV 158 (280)
Q Consensus 111 ~~~~~~~~~~~--~~~v~~~--~~--------~~~~~~~~~~l~~~~~~--------------~a~aL~~------~p~l 158 (280)
+++|....... +...+.. .. .....+...++.++.++ .|+||+. +|++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l 168 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW 168 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 44433221110 0000000 00 00000111122111111 1678998 9999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||||||+.+ +++++|++++++.|+|||++|||++++.+ +||+|++|++ ++++.|+++++.
T Consensus 169 LllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~----------~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 169 LFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAAL----------YADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHH----------HCSEEEEEETTEEEEEECHHHHC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHh
Confidence 9999997654 58899999987656899999999999986 9999999999 999999999887
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.98 E-value=1.8e-32 Score=246.64 Aligned_cols=167 Identities=16% Similarity=0.159 Sum_probs=121.2
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--------ccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK--------DTRYG 121 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~--------~~~~~ 121 (280)
++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+ ++|+|+.. ....|.+..... ..+..
T Consensus 23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFL-RCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred heEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHH-HHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 479999999999999999999999999999999999999999999 99999843 122222111000 00112
Q ss_pred cceeeeeccccc----------------------------ccccccCchHHHHHH--------------hhhhccCCCEE
Q 023563 122 LDSIVTHDGVKL----------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVI 159 (280)
Q Consensus 122 ~~~v~~~~~~~~----------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lL 159 (280)
+++++|...... ..+...++.++.++. |+||+.+|++|
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~ll 181 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIM 181 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEE
Confidence 333333211100 001111222211111 67899999999
Q ss_pred EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||||++.+ .++++|++++++ |+|||++|||++++.+ +||++++|++ ++++.|+++++.
T Consensus 182 lLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~----------~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 182 LFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFARE----------VGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHH----------HCSEEEEEETTEEEEEECHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHH----------hCCEEEEEECCEEEEECCHHHHH
Confidence 999997654 588999999876 9999999999999986 9999999999 999999988876
No 8
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.98 E-value=2.9e-33 Score=248.34 Aligned_cols=168 Identities=15% Similarity=0.167 Sum_probs=119.5
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe-------------e
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR-------------N 108 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~-------------~ 108 (280)
.+||+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. +|. .
T Consensus 4 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTL-SAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred CceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4589999999999998999999999999999999999999999999 99999832 221 1
Q ss_pred EEEecCCcccccc--cceeee--e-ccc--------cccccccc-CchHHHHH--------------HhhhhccCCCEEE
Q 023563 109 VAVIKSNKDTRYG--LDSIVT--H-DGV--------KLPCCALT-TLSSFRQK--------------FGSDAYDQVDVIG 160 (280)
Q Consensus 109 i~~~~~~~~~~~~--~~~v~~--~-~~~--------~~~~~~~~-~l~~~~~~--------------~a~aL~~~p~lLl 160 (280)
+++++|+...... +...+. . ... ....+... ++.++.++ .|+||+.+|++||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lll 162 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLM 162 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 4444443221100 000000 0 000 00000001 01111111 1678999999999
Q ss_pred EeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 161 IDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 161 LDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||||++.+ .++++|++++++ |+|||++|||++++.+ +||++++|++ ++++.|+++++.
T Consensus 163 LDEPts~LD~~~~~~l~~~l~~~~~~-g~tvi~vtHd~~~~~~----------~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 163 MDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNALGALK----------VAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEESCHHHHHH----------HCSEEEEEETTEEEEEEEHHHHH
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHh
Confidence 99997654 588899998764 9999999999998876 9999999999 998888888765
No 9
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.98 E-value=1.8e-33 Score=252.00 Aligned_cols=165 Identities=16% Similarity=0.168 Sum_probs=118.3
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc-------cccccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------DTRYGL 122 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------~~~~~~ 122 (280)
++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+ ++|+|+.. ....+.+..... ..+..+
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl-k~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLI-NVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 479999999999999999999999999999999999999999999 99999832 112221111000 001122
Q ss_pred ceeeeecccc----------c------------------------------ccccccCchHHHHHH--------------
Q 023563 123 DSIVTHDGVK----------L------------------------------PCCALTTLSSFRQKF-------------- 148 (280)
Q Consensus 123 ~~v~~~~~~~----------~------------------------------~~~~~~~l~~~~~~~-------------- 148 (280)
++++|..... . ..+...++.++.++.
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~i 164 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI 164 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHH
Confidence 3333221100 0 001111221111111
Q ss_pred hhhhccCCCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563 149 GSDAYDQVDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF 221 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~ 221 (280)
|+||+.+|++||||||++. ..++++|++++++ |+|||++|||++++.+ +||++++|++ ++++
T Consensus 165 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~----------~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 165 GRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLN----------YIDHLYVMFNGQIIA 233 (257)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGG----------GCSEEEEEETTEEEE
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHH----------hCCEEEEEECCEEEE
Confidence 6789999999999999765 4588999999876 9999999999999876 9999999999 9988
Q ss_pred ccCcce
Q 023563 222 CGKRAF 227 (280)
Q Consensus 222 ~g~~~~ 227 (280)
.|++++
T Consensus 234 ~g~~~~ 239 (257)
T 1g6h_A 234 EGRGEE 239 (257)
T ss_dssp EEESHH
T ss_pred EeCHHH
Confidence 888887
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.98 E-value=3.3e-32 Score=243.93 Aligned_cols=168 Identities=16% Similarity=0.133 Sum_probs=120.5
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe-----------eEE
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR-----------NVA 110 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~-----------~i~ 110 (280)
.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. .|. .++
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~ 91 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTL-RIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 91 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCccHHHHhhcEE
Confidence 3589999999999999999999999999999999999999999999 99999832 221 234
Q ss_pred EecCCcccccc--cceeeee----cc--------cccccccccCchHHHHHH--------------hhhhccCCCEEEEe
Q 023563 111 VIKSNKDTRYG--LDSIVTH----DG--------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGID 162 (280)
Q Consensus 111 ~~~~~~~~~~~--~~~v~~~----~~--------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLD 162 (280)
+++|....... +...+.. .. .....+...++.++.++. |+||+.+|++||||
T Consensus 92 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD 171 (256)
T 1vpl_A 92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD 171 (256)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 44443221100 0000000 00 000011111222221111 67899999999999
Q ss_pred CcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 163 EAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 163 EP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
||++. ..++++|++++++ |+|||++|||++++.+ +||++++|++ ++++.|+++++.
T Consensus 172 EPts~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~----------~~d~v~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 172 EPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNMLEVEF----------LCDRIALIHNGTIVETGTVEELK 234 (256)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCHHHHTT----------TCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCccccCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHH----------HCCEEEEEECCEEEEecCHHHHH
Confidence 99765 4588999998765 9999999999999986 8999999999 999889888875
No 11
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.98 E-value=3.7e-32 Score=238.85 Aligned_cols=161 Identities=12% Similarity=0.074 Sum_probs=114.3
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcc---------cc-
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKD---------TR- 119 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~---------~~- 119 (280)
+||+++|++++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....+.+...... .+
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLL-YILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHH-HHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 479999999999999999999999999999999999999999999 99999843 1222221111000 00
Q ss_pred cccceeeeecccccc---------------------------cccccCchHHHHH--------------HhhhhccCCCE
Q 023563 120 YGLDSIVTHDGVKLP---------------------------CCALTTLSSFRQK--------------FGSDAYDQVDV 158 (280)
Q Consensus 120 ~~~~~v~~~~~~~~~---------------------------~~~~~~l~~~~~~--------------~a~aL~~~p~l 158 (280)
..+++++|....... .+...++.++.++ .|+||+.+|++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL 161 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 123333332111100 0111111111111 16789999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
||||||++.+ .++++|++++++ |+|||++|||++++ + +||++++|++ ++++.|+
T Consensus 162 llLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~----------~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 162 LFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELA-E----------LTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHH-T----------TSSEEEEEETTEEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHH-H----------hCCEEEEEECCEEEEEee
Confidence 9999997654 588999999877 99999999999987 5 8999999999 8887765
No 12
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.97 E-value=5.9e-32 Score=239.24 Aligned_cols=166 Identities=18% Similarity=0.188 Sum_probs=116.7
Q ss_pred cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------
Q 023563 52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------ 107 (280)
Q Consensus 52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------ 107 (280)
||+++||+++|++ +.+|+||||+|++||+++|+||||||||||+ ++|+|+.. +|.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTML-NIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence 5899999999963 4699999999999999999999999999999 99999732 221
Q ss_pred ----eEEEecCCcccccc--cceeee-----e--cc--------cccccccccCchHHH-H------------H--Hhhh
Q 023563 108 ----NVAVIKSNKDTRYG--LDSIVT-----H--DG--------VKLPCCALTTLSSFR-Q------------K--FGSD 151 (280)
Q Consensus 108 ----~i~~~~~~~~~~~~--~~~v~~-----~--~~--------~~~~~~~~~~l~~~~-~------------~--~a~a 151 (280)
.+++++|+...... +...+. . .. .....+...++.+.. + + .|+|
T Consensus 80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra 159 (235)
T 3tif_A 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (235)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 35666665432111 100000 0 00 000111122222211 1 1 1689
Q ss_pred hccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccC
Q 023563 152 AYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
|+.+|++||||||++.+ .++++|++++++.|+|||++|||++.+ + +||+|++|++ +++..++
T Consensus 160 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~----------~~d~i~~l~~G~i~~~~~ 228 (235)
T 3tif_A 160 LANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-R----------FGERIIYLKDGEVEREEK 228 (235)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-T----------TSSEEEEEETTEEEEEEE
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-H----------hCCEEEEEECCEEEEEcC
Confidence 99999999999997654 588999999766699999999999965 4 8999999999 9998888
Q ss_pred cceee
Q 023563 225 RAFFT 229 (280)
Q Consensus 225 ~~~~~ 229 (280)
++++.
T Consensus 229 ~~~~~ 233 (235)
T 3tif_A 229 LRGFD 233 (235)
T ss_dssp CC---
T ss_pred hhhhc
Confidence 87754
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.97 E-value=4.7e-32 Score=253.91 Aligned_cols=168 Identities=11% Similarity=0.095 Sum_probs=122.7
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Ccccccccceee
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NKDTRYGLDSIV 126 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~~~~~~~~~v~ 126 (280)
+|+++||+|+|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....|.+-.. ....+..+++++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLL-YTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHH-HHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence 69999999999988999999999999999999999999999999 99999843 1122211110 001122334444
Q ss_pred eeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563 127 THDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ 165 (280)
Q Consensus 127 ~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~ 165 (280)
|...... ..+...++.++.+++ |+||+.+|++||||||+
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 161 (362)
T 2it1_A 82 QNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPL 161 (362)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGG
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 3221110 011112222221111 67899999999999997
Q ss_pred cHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563 166 FFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL 230 (280)
Q Consensus 166 ~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~ 230 (280)
+.+ ++++.|+++.++.|+|+|++|||++++.+ +||+|++|++ +++..|+++++..
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~----------~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 162 SNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALA----------MADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHh
Confidence 654 58889999877669999999999999976 9999999999 9999999988863
No 14
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.97 E-value=1.1e-31 Score=252.24 Aligned_cols=164 Identities=18% Similarity=0.139 Sum_probs=125.6
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEE------ecCCcc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAV------IKSNKD 117 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~------~~~~~~ 117 (280)
+|+++||+|+|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+. ++|+++.. .++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTL-RMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--- 78 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHTSSCCSEEEEEETTEEEEEGGGTEECCG---
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHH-HHHHcCCCCCccEEEECCEECccccccccCCH---
Confidence 69999999999999999999999999999999999999999999 9999983 34444432 111
Q ss_pred cccccceeeeeccccccc----------------------------ccccCchHHHHHH--------------hhhhccC
Q 023563 118 TRYGLDSIVTHDGVKLPC----------------------------CALTTLSSFRQKF--------------GSDAYDQ 155 (280)
Q Consensus 118 ~~~~~~~v~~~~~~~~~~----------------------------~~~~~l~~~~~~~--------------a~aL~~~ 155 (280)
.+..+++++|.... ++. +...++.++.+++ |+||+.+
T Consensus 79 ~~r~ig~v~Q~~~l-~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 157 (372)
T 1g29_1 79 KDRDIAMVFQSYAL-YPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRK 157 (372)
T ss_dssp GGSSEEEECSCCCC-CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred hHCCEEEEeCCCcc-CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 12345556553222 111 1111222221111 6789999
Q ss_pred CCEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 156 VDVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 156 p~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
|++||||||++. .++++.|+++.++.|+|+|+||||++++.. +||+|++|++ +++..|+++++
T Consensus 158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~----------~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMT----------MGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH----------HCSEEEEEETTEEEEEECHHHH
T ss_pred CCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHH----------hCCEEEEEeCCEEEEeCCHHHH
Confidence 999999999664 458889999877669999999999999976 9999999999 99999999888
Q ss_pred ee
Q 023563 229 TL 230 (280)
Q Consensus 229 ~~ 230 (280)
..
T Consensus 228 ~~ 229 (372)
T 1g29_1 228 YD 229 (372)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 15
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.97 E-value=3.7e-32 Score=246.47 Aligned_cols=172 Identities=17% Similarity=0.080 Sum_probs=121.8
Q ss_pred CCCCCccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCc--------
Q 023563 46 PKFIHSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNK-------- 116 (280)
Q Consensus 46 ~~~~~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~-------- 116 (280)
|....++|+++||+++|+++.+|+||||+|++||+++|+||||||||||+ ++|+|+.. ....|.+.....
T Consensus 15 ~~~~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 93 (279)
T 2ihy_A 15 PRGSHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLL-NILNAYEPATSGTVNLFGKMPGKVGYSAE 93 (279)
T ss_dssp ----CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTBCCC---CCHH
T ss_pred CCCCCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCeEEEECCEEcccccCCHH
Confidence 33445689999999999999999999999999999999999999999999 99999843 222222221110
Q ss_pred ccccccceeeeeccccc---------------------------------ccccccCchHHHHHH--------------h
Q 023563 117 DTRYGLDSIVTHDGVKL---------------------------------PCCALTTLSSFRQKF--------------G 149 (280)
Q Consensus 117 ~~~~~~~~v~~~~~~~~---------------------------------~~~~~~~l~~~~~~~--------------a 149 (280)
..+..+++++|.....+ ..+...++.++.++. |
T Consensus 94 ~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lA 173 (279)
T 2ihy_A 94 TVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIA 173 (279)
T ss_dssp HHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred HHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 01122333333211000 001111222111111 6
Q ss_pred hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEE--EEEEechhHhhhccCCccccccccceEEEeec-eec
Q 023563 150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTV--IVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE 220 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tv--iivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~ 220 (280)
+||+.+|++||||||++.+ .++++|++++++ |+|| |++|||++++.+ +||+|++|++ +++
T Consensus 174 raL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~----------~~d~v~~l~~G~i~ 242 (279)
T 2ihy_A 174 RALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITA----------NFSKILLLKDGQSI 242 (279)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCT----------TCCEEEEEETTEEE
T ss_pred HHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHH----------hCCEEEEEECCEEE
Confidence 7899999999999997654 588999999877 9999 999999999876 9999999999 999
Q ss_pred cccCcceee
Q 023563 221 FCGKRAFFT 229 (280)
Q Consensus 221 ~~g~~~~~~ 229 (280)
+.|+++++.
T Consensus 243 ~~g~~~~~~ 251 (279)
T 2ihy_A 243 QQGAVEDIL 251 (279)
T ss_dssp EEEEHHHHC
T ss_pred EECCHHHHh
Confidence 999988876
No 16
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.97 E-value=1.2e-31 Score=250.90 Aligned_cols=168 Identities=12% Similarity=0.028 Sum_probs=123.1
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Ccccccccceee
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NKDTRYGLDSIV 126 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~~~~~~~~~v~ 126 (280)
+|+++||+|+|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....|.+... ....+..+++++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTL-LMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHH-HHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence 69999999999999999999999999999999999999999999 99999832 1122211110 000112233333
Q ss_pred eecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563 127 THDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ 165 (280)
Q Consensus 127 ~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~ 165 (280)
|..... ...+...++.++.+++ |+||+.+|++||||||+
T Consensus 82 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~ 161 (359)
T 2yyz_A 82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPL 161 (359)
T ss_dssp SSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 321110 0111222333322221 67999999999999996
Q ss_pred cH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563 166 FF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL 230 (280)
Q Consensus 166 ~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~ 230 (280)
+. .++++.|+++.++.|+|+|++|||++++.+ +||+|++|++ +++..|+++++..
T Consensus 162 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~----------~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 162 SNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMT----------MASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHHh
Confidence 64 458889999877669999999999999976 9999999999 9999999988863
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.97 E-value=8.5e-32 Score=251.56 Aligned_cols=168 Identities=17% Similarity=0.133 Sum_probs=125.1
Q ss_pred cEEEcCceEEeCCee--eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEec--CCcccc
Q 023563 52 MVSPRPPLFSLQNRN--LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIK--SNKDTR 119 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~--vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~--~~~~~~ 119 (280)
+|+++||+|+|+++. +|+|+||+|++||+++|+||||||||||+ ++|+|+. ++|+++.... .....+
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFM-RIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHH-HHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 699999999998887 99999999999999999999999999999 9999983 2444443200 011112
Q ss_pred cccceeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCE
Q 023563 120 YGLDSIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDV 158 (280)
Q Consensus 120 ~~~~~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~l 158 (280)
..+++++|...... ..+...++.++.+++ |+||+.+|++
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l 161 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL 161 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 34455554322110 001112222222211 6789999999
Q ss_pred EEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563 159 IGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL 230 (280)
Q Consensus 159 LlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~ 230 (280)
||||||++. .++++.|+++.++.|+|+|++|||++++.+ +||+|++|++ +++..|+++++..
T Consensus 162 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~----------~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFA----------IADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp EEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999654 468999999977669999999999999986 9999999999 9999999988863
No 18
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.97 E-value=1.2e-31 Score=250.48 Aligned_cols=170 Identities=19% Similarity=0.145 Sum_probs=124.6
Q ss_pred CccEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Ccccccccc
Q 023563 50 HSMVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NKDTRYGLD 123 (280)
Q Consensus 50 ~~~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~~~~~~~~ 123 (280)
.++|+++||+|+| +++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....|.+... ....+..++
T Consensus 12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 90 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTIL-RLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90 (355)
T ss_dssp CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTCCGGGSSEE
T ss_pred CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHH-HHHhCCCCCCccEEEECCEECCcCChhhCcEE
Confidence 3589999999999 888899999999999999999999999999999 99999843 1222221110 011122344
Q ss_pred eeeeeccccc---------------------------ccccccCchHHHHHH--------------hhhhccCCCEEEEe
Q 023563 124 SIVTHDGVKL---------------------------PCCALTTLSSFRQKF--------------GSDAYDQVDVIGID 162 (280)
Q Consensus 124 ~v~~~~~~~~---------------------------~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLD 162 (280)
+++|...... ..+...++.++.+++ |+||+.+|++||||
T Consensus 91 ~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 170 (355)
T 1z47_A 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFD 170 (355)
T ss_dssp EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4444221110 011122232222221 67899999999999
Q ss_pred CcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563 163 EAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL 230 (280)
Q Consensus 163 EP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~ 230 (280)
||++. .+++++|+++.++.|+|+|++|||++++.+ +||+|++|++ +++..|+++++..
T Consensus 171 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~----------~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 171 EPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALE----------VADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp STTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHH----------hCCEEEEEECCEEEEEcCHHHHHh
Confidence 99664 458889999877669999999999999986 9999999999 9999999988863
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.97 E-value=2.2e-31 Score=250.23 Aligned_cols=168 Identities=16% Similarity=0.103 Sum_probs=123.3
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC----Ccccccccceee
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS----NKDTRYGLDSIV 126 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~----~~~~~~~~~~v~ 126 (280)
+|+++||+|+|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....|.+... ....+..+++++
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTL-RMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCceEEEECCEECCCCChhhCcEEEEe
Confidence 69999999999999999999999999999999999999999999 99999843 2222221110 001122344444
Q ss_pred eecccc---------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCcc
Q 023563 127 THDGVK---------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQ 165 (280)
Q Consensus 127 ~~~~~~---------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~ 165 (280)
|..... ...+...++.++.+++ |+||+.+|++||||||+
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 169 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 169 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 422111 0011122333322221 67999999999999996
Q ss_pred cH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeee
Q 023563 166 FF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTL 230 (280)
Q Consensus 166 ~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~ 230 (280)
+. .++++.|+++.++.|+|+|++|||++++.+ +||+|++|++ +++..|+++++..
T Consensus 170 s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~----------~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 170 SNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMT----------MGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH----------HCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHHh
Confidence 64 458889999877669999999999999976 9999999999 9999999988863
No 20
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.97 E-value=2.6e-31 Score=237.60 Aligned_cols=167 Identities=14% Similarity=0.138 Sum_probs=124.3
Q ss_pred ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-------CeeEEEecCCcccccc-
Q 023563 51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-------GRNVAVIKSNKDTRYG- 121 (280)
Q Consensus 51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-------g~~i~~~~~~~~~~~~- 121 (280)
+||+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+... .+.+++++|.......
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~ 81 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLL-DLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAY 81 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHH-HHHTTSSCCSEEEEEECSCEEEECSCCCCSSCC
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEEeccEEEEcCCCccCCCC
Confidence 3799999999998 88999999999999999999999999999999 999998432 2357788776532111
Q ss_pred -cceeeee--c---c-----------cccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH--
Q 023563 122 -LDSIVTH--D---G-----------VKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE-- 168 (280)
Q Consensus 122 -~~~v~~~--~---~-----------~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~-- 168 (280)
+...+.. . . .....+...++.++.++. |+||+.+|++||||||++.+
T Consensus 82 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~ 161 (253)
T 2nq2_C 82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDL 161 (253)
T ss_dssp BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCH
T ss_pred CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 1100000 0 0 000111122332222211 67899999999999997654
Q ss_pred ----HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 169 ----DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 169 ----~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
.++++|++++++.|+|||++|||++++.+ +||++++|++ + ++.|+++++.
T Consensus 162 ~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~----------~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 162 ANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA----------IANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHH----------HCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH----------hCCEEEEEeCCe-EecCCHHHHh
Confidence 58888988876559999999999999976 9999999999 9 8889888876
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.97 E-value=1.7e-31 Score=240.34 Aligned_cols=166 Identities=20% Similarity=0.229 Sum_probs=123.8
Q ss_pred cEEEcCceEEeC--C---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe---------eE
Q 023563 52 MVSPRPPLFSLQ--N---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR---------NV 109 (280)
Q Consensus 52 ~l~~~~ls~~y~--~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~---------~i 109 (280)
||+++||+++|+ + +.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. +|. .+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl-~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i 80 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLL-QIVAGLIEPTSGDVLYDGERKKGYEIRRNI 80 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECCHHHHGGGE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCcEEEECCEECchHHhhhhE
Confidence 699999999997 5 6799999999999999999999999999999 99999732 332 35
Q ss_pred EEecCCcc-ccc--ccceee--------eecc---cccccccccCch--HHHHHH--------------hhhhccCCCEE
Q 023563 110 AVIKSNKD-TRY--GLDSIV--------THDG---VKLPCCALTTLS--SFRQKF--------------GSDAYDQVDVI 159 (280)
Q Consensus 110 ~~~~~~~~-~~~--~~~~v~--------~~~~---~~~~~~~~~~l~--~~~~~~--------------a~aL~~~p~lL 159 (280)
++++|+.. ... .+...+ .... .....+...++. ++.++. |+||+.+|++|
T Consensus 81 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 81 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 66666531 111 110000 0000 001122233444 443322 67899999999
Q ss_pred EEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 160 GIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 160 lLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||||++.+ .++++|++++++ |+|||++|||++++.+ +||++++|++ +++..|+++++.
T Consensus 161 lLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~----------~~d~v~~l~~G~i~~~g~~~~~~ 226 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVIN----------HVDRVVVLEKGKKVFDGTRMEFL 226 (266)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGG----------GCSEEEEEETTEEEEEEEHHHHH
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHh
Confidence 999997654 588999999876 9999999999999876 8999999999 999999988876
No 22
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.97 E-value=5.2e-31 Score=245.71 Aligned_cols=168 Identities=17% Similarity=0.126 Sum_probs=122.5
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----cccccccceee
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSIV 126 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v~ 126 (280)
||+++||+|+|+++ +|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....|.+-... ...+..+++++
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFL-ELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHH-HHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHH-HHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence 58999999999988 99999999999999999999999999999 99999843 22222211100 01122334444
Q ss_pred eecccc------------------------cccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccH-
Q 023563 127 THDGVK------------------------LPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFF- 167 (280)
Q Consensus 127 ~~~~~~------------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~- 167 (280)
|..... ...+...++.++.+++ |+||+.+|++||||||++.
T Consensus 79 Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~L 158 (348)
T 3d31_A 79 QNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSAL 158 (348)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTS
T ss_pred cCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 321110 0111112222222211 6799999999999999764
Q ss_pred -----HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563 168 -----EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR 231 (280)
Q Consensus 168 -----~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~ 231 (280)
..+++.|+++.++.|+|+|++|||++++.+ +||+|++|++ +++..|+++++..+
T Consensus 159 D~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~----------~adri~vl~~G~i~~~g~~~~~~~~ 218 (348)
T 3d31_A 159 DPRTQENAREMLSVLHKKNKLTVLHITHDQTEARI----------MADRIAVVMDGKLIQVGKPEEIFEK 218 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHH----------HCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEECCHHHHHhC
Confidence 458899999987679999999999999976 9999999999 99999999988643
No 23
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.97 E-value=4.9e-31 Score=237.52 Aligned_cols=168 Identities=18% Similarity=0.146 Sum_probs=116.8
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch---hCCee------------------
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET---QKGRN------------------ 108 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~---~~g~~------------------ 108 (280)
.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+. .....
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLl-k~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLS-ATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 3589999999999999999999999999999999999999999999 9999972 11122
Q ss_pred --EEEecCCccccccc--c----eee-------e-----ec---ccccccccccCc-------------hH-HHHHH--h
Q 023563 109 --VAVIKSNKDTRYGL--D----SIV-------T-----HD---GVKLPCCALTTL-------------SS-FRQKF--G 149 (280)
Q Consensus 109 --i~~~~~~~~~~~~~--~----~v~-------~-----~~---~~~~~~~~~~~l-------------~~-~~~~~--a 149 (280)
+++++|........ . ... . .. ......+...++ +. ..++. |
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA 176 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 176 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 34444433210000 0 000 0 00 000000111111 11 11111 6
Q ss_pred hhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccc-cceEEEeec-eecc
Q 023563 150 SDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPL-ADSVTKLTA-RCEF 221 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~-aD~i~~L~~-~i~~ 221 (280)
+||+.+|++||||||++.+ .++++|++++++ |+|||++|||++++.. + ||++++|++ ++++
T Consensus 177 raL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~----------~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 177 QMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG-KRSFIIVTHYQRILDY----------IKPDYVHVLYQGRIVK 245 (267)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCS-SCEEEEECSSGGGGGT----------SCCSEEEEEETTEEEE
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeeCHHHHHh----------hcCCEEEEEECCEEEE
Confidence 7899999999999997654 478888887655 9999999999998874 6 899999999 9998
Q ss_pred ccCcceee
Q 023563 222 CGKRAFFT 229 (280)
Q Consensus 222 ~g~~~~~~ 229 (280)
.|+++++.
T Consensus 246 ~g~~~~~~ 253 (267)
T 2zu0_C 246 SGDFTLVK 253 (267)
T ss_dssp EECTTHHH
T ss_pred EcCHHHHh
Confidence 88887653
No 24
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.97 E-value=8.4e-31 Score=232.67 Aligned_cols=164 Identities=16% Similarity=0.081 Sum_probs=117.8
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC----cccccccceee
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN----KDTRYGLDSIV 126 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~----~~~~~~~~~v~ 126 (280)
||+++|++++|++ +|+|+||+|++ |+++|+||||||||||+ ++|+|+.. ....+.+.... ...+..+++++
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFL-ELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence 4789999999986 49999999999 99999999999999999 99999843 22233221110 11122344444
Q ss_pred eecccccc-------------------------cccccCchHHHHH--------------HhhhhccCCCEEEEeCcccH
Q 023563 127 THDGVKLP-------------------------CCALTTLSSFRQK--------------FGSDAYDQVDVIGIDEAQFF 167 (280)
Q Consensus 127 ~~~~~~~~-------------------------~~~~~~l~~~~~~--------------~a~aL~~~p~lLlLDEP~~~ 167 (280)
|....... .+...++.++.++ .|+||+.+|++||||||++.
T Consensus 77 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~ 156 (240)
T 2onk_A 77 QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSA 156 (240)
T ss_dssp SSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSS
T ss_pred CCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 43211100 0111122111111 16789999999999999765
Q ss_pred ------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 168 ------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 168 ------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
..++++|++++++.|+|||++|||++++.+ +||++++|++ ++++.|+++++.
T Consensus 157 LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~----------~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 157 VDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAM----------LADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHH----------HCSEEEEEETTEEEEEECHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEECCHHHHH
Confidence 458889999876559999999999999876 9999999999 999999988876
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.97 E-value=1.6e-30 Score=234.63 Aligned_cols=167 Identities=15% Similarity=0.119 Sum_probs=118.0
Q ss_pred ccEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------
Q 023563 51 SMVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------ 107 (280)
Q Consensus 51 ~~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------ 107 (280)
++|+++||+++|++ +.+|+||||+|++||+++|+||||||||||+ ++|+|+.. +|.
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 47999999999976 7899999999999999999999999999999 99999832 221
Q ss_pred eEEEecCCccccc-ccceeeee--ccc-----ccccccccCchHHH-----------------------HHH--hhhhcc
Q 023563 108 NVAVIKSNKDTRY-GLDSIVTH--DGV-----KLPCCALTTLSSFR-----------------------QKF--GSDAYD 154 (280)
Q Consensus 108 ~i~~~~~~~~~~~-~~~~v~~~--~~~-----~~~~~~~~~l~~~~-----------------------~~~--a~aL~~ 154 (280)
.+++++|...... .+...+.. ... ........++.++. ++. |+||+.
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 2455555432100 00000000 000 00000001111111 111 679999
Q ss_pred CCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcce
Q 023563 155 QVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAF 227 (280)
Q Consensus 155 ~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~ 227 (280)
+|++||||||++.+ .++++|+++.++.|+|||++|||++++. .||+|++|++ ++++.|++++
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-----------~~d~v~~l~~G~i~~~g~~~~ 242 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-----------RAHHILFLKEGSVCEQGTHLQ 242 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-----------TCSEEEEEETTEEEEEECHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-----------hCCEEEEEECCEEEEECCHHH
Confidence 99999999997654 4788888886545999999999999875 6999999999 9999999888
Q ss_pred ee
Q 023563 228 FT 229 (280)
Q Consensus 228 ~~ 229 (280)
+.
T Consensus 243 l~ 244 (271)
T 2ixe_A 243 LM 244 (271)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.97 E-value=2.1e-30 Score=231.23 Aligned_cols=163 Identities=17% Similarity=0.103 Sum_probs=115.0
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc---hhCCeeEEEecCCc-------ccccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE---TQKGRNVAVIKSNK-------DTRYG 121 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl---~~~g~~i~~~~~~~-------~~~~~ 121 (280)
||+++||+++|+++.+|+|+||+|++||+++|+||||||||||+ ++|+|+ ......+.+..... ..+..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl-k~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLG-KILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 69999999999999999999999999999999999999999999 999996 22223332211110 00111
Q ss_pred cceeeeecccc------------------------------cccccccCc-hHHHH-------------H--HhhhhccC
Q 023563 122 LDSIVTHDGVK------------------------------LPCCALTTL-SSFRQ-------------K--FGSDAYDQ 155 (280)
Q Consensus 122 ~~~v~~~~~~~------------------------------~~~~~~~~l-~~~~~-------------~--~a~aL~~~ 155 (280)
+++++|..... ...+...++ .++.+ + .|+||+.+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~ 161 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLE 161 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHC
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcC
Confidence 22233211100 000001122 11111 1 16789999
Q ss_pred CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccc-cceEEEeec-eeccccCcc
Q 023563 156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPL-ADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~-aD~i~~L~~-~i~~~g~~~ 226 (280)
|++||||||++.+ .++++|++++++ |+|||++|||++++.. + ||++++|++ ++++.|+++
T Consensus 162 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~----------~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 162 PTYAVLDETDSGLDIDALKVVARGVNAMRGP-NFGALVITHYQRILNY----------IQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp CSEEEEECGGGTTCHHHHHHHHHHHHHHCST-TCEEEEECSSSGGGGT----------SCCSEEEEEETTEEEEEESHH
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHH----------hcCCEEEEEECCEEEEEeCHH
Confidence 9999999997754 478888888664 9999999999999875 7 599999999 988888776
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.96 E-value=6e-30 Score=227.99 Aligned_cols=164 Identities=18% Similarity=0.185 Sum_probs=116.6
Q ss_pred cEEEcCceEEe--CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563 52 MVSPRPPLFSL--QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV 109 (280)
Q Consensus 52 ~l~~~~ls~~y--~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i 109 (280)
-|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. +|. .+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLT-KLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 38999999999 467899999999999999999999999999999 99999832 221 24
Q ss_pred EEecCCccccc-ccceeee--ecc----cccccccccCchHHHHH-------------------------HhhhhccCCC
Q 023563 110 AVIKSNKDTRY-GLDSIVT--HDG----VKLPCCALTTLSSFRQK-------------------------FGSDAYDQVD 157 (280)
Q Consensus 110 ~~~~~~~~~~~-~~~~v~~--~~~----~~~~~~~~~~l~~~~~~-------------------------~a~aL~~~p~ 157 (280)
++++|...... .+...+. ... .....+...++.++.++ .|+||+.+|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 55555432100 0000000 000 00001111223332221 1678999999
Q ss_pred EEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+||||||++. ..+++.|+++. + |+|||++|||++++. .||++++|++ ++++.|+++++.
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~~~~-----------~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLSTVK-----------NADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGGGGT-----------TSSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence 9999999765 35888888884 4 999999999999874 6999999999 999999988876
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.96 E-value=7.2e-30 Score=226.75 Aligned_cols=164 Identities=17% Similarity=0.185 Sum_probs=115.9
Q ss_pred cEEEcCceEEe-CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCC------cccccccc
Q 023563 52 MVSPRPPLFSL-QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSN------KDTRYGLD 123 (280)
Q Consensus 52 ~l~~~~ls~~y-~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~------~~~~~~~~ 123 (280)
||+++|++++| +++.+|+|+||+|++||+++|+||||||||||+ ++|+|+.. ....|.+.... ...+..++
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIF-SLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHH-HHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 58999999999 677899999999999999999999999999999 99999832 11222211100 01112233
Q ss_pred eeeeecccc---------cc------------cccccCchHH-----------------------HHH--HhhhhccCCC
Q 023563 124 SIVTHDGVK---------LP------------CCALTTLSSF-----------------------RQK--FGSDAYDQVD 157 (280)
Q Consensus 124 ~v~~~~~~~---------~~------------~~~~~~l~~~-----------------------~~~--~a~aL~~~p~ 157 (280)
+++|..... +. .+...++.++ .++ .|+||+.+|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 333321100 00 0000011111 111 1678999999
Q ss_pred EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+||||||++.+ .+++.|+++. + |+|||++|||++++. .||++++|++ +++..|+++++.
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~-----------~~d~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIV-----------DADKIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHH-----------HCSEEEEEETTEECCCSCHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHH-----------hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999997765 4889999886 5 999999999999874 6999999999 999999888775
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.96 E-value=1.2e-29 Score=232.67 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=118.2
Q ss_pred ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563 51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV 109 (280)
Q Consensus 51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i 109 (280)
..|+++||+|+|+ ++.+|+||||+|++||+++|+||||||||||+ ++|.|+.. +|. .+
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl-~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTIL-RLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHH-HHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHH-HHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 3699999999995 57899999999999999999999999999999 99999732 232 35
Q ss_pred EEecCCccccc-ccceeee--ecc----cccccccccCchHHH-----------------------HH--HhhhhccCCC
Q 023563 110 AVIKSNKDTRY-GLDSIVT--HDG----VKLPCCALTTLSSFR-----------------------QK--FGSDAYDQVD 157 (280)
Q Consensus 110 ~~~~~~~~~~~-~~~~v~~--~~~----~~~~~~~~~~l~~~~-----------------------~~--~a~aL~~~p~ 157 (280)
++++|+..... .+...+. ... .....+...++.++. ++ .||||+.+|+
T Consensus 131 ~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~ 210 (306)
T 3nh6_A 131 GVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPG 210 (306)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCC
Confidence 55555432100 0000000 000 000001111222221 11 1789999999
Q ss_pred EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+|||||||+.+ .+++.|+++.+ ++|+|+|||+++.+. .||+|++|++ ++++.|+++++.
T Consensus 211 iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~-----------~aD~i~vl~~G~iv~~G~~~el~ 276 (306)
T 3nh6_A 211 IILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTVV-----------NADQILVIKDGCIVERGRHEALL 276 (306)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHHHH-----------TCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHHHH-----------cCCEEEEEECCEEEEECCHHHHH
Confidence 99999997654 47888888764 789999999999986 5999999999 999999999887
No 30
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.96 E-value=1.8e-29 Score=226.43 Aligned_cols=165 Identities=15% Similarity=0.097 Sum_probs=115.7
Q ss_pred ccEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc------ccccc
Q 023563 51 SMVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK------DTRYG 121 (280)
Q Consensus 51 ~~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~------~~~~~ 121 (280)
++|+++||+++|++ +.+|+|+||+|++|++++|+||||||||||+ ++|+|+......|.+..... ..+..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA-KLLYRFYDAEGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCEEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHH-HHHhccCCCCeEEEECCEEhhhcCHHHHhcc
Confidence 47999999999976 4699999999999999999999999999999 99999843222222111100 00112
Q ss_pred cceeeeecccc--------------------cccccccCchHHH-----------------------HH--HhhhhccCC
Q 023563 122 LDSIVTHDGVK--------------------LPCCALTTLSSFR-----------------------QK--FGSDAYDQV 156 (280)
Q Consensus 122 ~~~v~~~~~~~--------------------~~~~~~~~l~~~~-----------------------~~--~a~aL~~~p 156 (280)
+++++|..... ...+...++.++. ++ .|+||+.+|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 22333211100 0001111222221 11 167899999
Q ss_pred CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++||||||++.+ .+++.|+++. + |+|||++|||++++. .||++++|++ +++..|+++++.
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTIS-----------SAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGST-----------TCSEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence 999999997654 4788888885 3 899999999999874 6999999999 999889888775
No 31
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.96 E-value=1e-29 Score=223.89 Aligned_cols=165 Identities=18% Similarity=0.173 Sum_probs=115.2
Q ss_pred ccEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-------CeeEEEecCCccccc-
Q 023563 51 SMVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-------GRNVAVIKSNKDTRY- 120 (280)
Q Consensus 51 ~~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-------g~~i~~~~~~~~~~~- 120 (280)
.+|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+... ...++|++|......
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~ 83 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLL-MMIMGELEPSEGKIKHSGRISFCSQFSWIMPG 83 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEECSCEEEECSSCCCCSB
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCcCCccEEEECCEEEEEecCCcccCC
Confidence 3799999999994 57899999999999999999999999999999 999998431 125778887653211
Q ss_pred ccceeee----ecc-ccccccccc----------------------CchHH-HHH--HhhhhccCCCEEEEeCcccHHH-
Q 023563 121 GLDSIVT----HDG-VKLPCCALT----------------------TLSSF-RQK--FGSDAYDQVDVIGIDEAQFFED- 169 (280)
Q Consensus 121 ~~~~v~~----~~~-~~~~~~~~~----------------------~l~~~-~~~--~a~aL~~~p~lLlLDEP~~~~~- 169 (280)
.+...+. ... .....+... .++.= .++ .|+||+.+|++||||||++..|
T Consensus 84 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~ 163 (229)
T 2pze_A 84 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163 (229)
T ss_dssp CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH
T ss_pred CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH
Confidence 1100000 000 000000001 12111 111 2789999999999999987654
Q ss_pred -----HHHHH-HHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 170 -----LYDFC-REAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 170 -----i~~~l-~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+++.+ +++. + |+|||++|||++++. .||++++|++ ++++.|+++++.
T Consensus 164 ~~~~~i~~~l~~~~~-~-~~tvi~vtH~~~~~~-----------~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 164 LTEKEIFESCVCKLM-A-NKTRILVTSKMEHLK-----------KADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp HHHHHHHHHCCCCCT-T-TSEEEEECCCHHHHH-----------HCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHhh-C-CCEEEEEcCChHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence 44432 2332 3 899999999999874 6999999999 999999988875
No 32
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.95 E-value=2e-29 Score=224.99 Aligned_cols=163 Identities=16% Similarity=0.090 Sum_probs=115.9
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc------ccccccce
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK------DTRYGLDS 124 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~------~~~~~~~~ 124 (280)
+||+++||+++ .+|+|+||+|++||+++|+||||||||||+ ++|+|+......+.+..... ..+..+++
T Consensus 3 ~~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLl-k~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 3 IVMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLL-ARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHH-HHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred cEEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCeEEEECCEECCcCCHHHHhceEEE
Confidence 37999999987 689999999999999999999999999999 99999843113332211110 00111233
Q ss_pred eeeecccc----------------------cccccccCchHHHHHH--------------hhhhccCCC-------EEEE
Q 023563 125 IVTHDGVK----------------------LPCCALTTLSSFRQKF--------------GSDAYDQVD-------VIGI 161 (280)
Q Consensus 125 v~~~~~~~----------------------~~~~~~~~l~~~~~~~--------------a~aL~~~p~-------lLlL 161 (280)
++|..... ...+...++.++.++. |+||+.+|+ +|||
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllL 157 (249)
T 2qi9_C 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157 (249)
T ss_dssp ECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred ECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEE
Confidence 33321110 0011112222221111 678999999 9999
Q ss_pred eCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 162 DEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 162 DEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||++.+ .++++|++++++ |+|||++|||++++.+ +||++++|++ ++++.|+++++.
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~----------~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 158 DEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLNHTLR----------HAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp SSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHH----------HCSEEEEEETTEEEEEEEHHHHS
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEEECCEEEEeCCHHHHh
Confidence 9997654 588899999776 9999999999999976 9999999999 999889888876
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.95 E-value=5.6e-29 Score=235.15 Aligned_cols=167 Identities=12% Similarity=0.041 Sum_probs=118.2
Q ss_pred ccEEEcCceEEe--CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcc------ccccc
Q 023563 51 SMVSPRPPLFSL--QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKD------TRYGL 122 (280)
Q Consensus 51 ~~l~~~~ls~~y--~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~------~~~~~ 122 (280)
..|+++||+|+| +++.+|+||||+|++||+++|+||||||||||+ ++|+|+......|.+-..... .+..+
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLL-SAFLRLLNTEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHH-HHHHTCSEEEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHH-HHHhCCCCCCeEEEECCEECCcCChHHHhCCE
Confidence 369999999999 668899999999999999999999999999999 999998432223322211110 11223
Q ss_pred ceeeeecccc-------------------cccccccCchHHHH-----------------------H--HhhhhccCCCE
Q 023563 123 DSIVTHDGVK-------------------LPCCALTTLSSFRQ-----------------------K--FGSDAYDQVDV 158 (280)
Q Consensus 123 ~~v~~~~~~~-------------------~~~~~~~~l~~~~~-----------------------~--~a~aL~~~p~l 158 (280)
++++|....+ ...+...++.++.+ + .|+||+.+|++
T Consensus 97 g~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l 176 (390)
T 3gd7_A 97 GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 176 (390)
T ss_dssp EEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 3343321110 01111223332222 1 16899999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceeeee
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFTLR 231 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~~~ 231 (280)
||||||++.+ .+++.|+++. .++|+|++|||++.+. .||+|++|++ +++..|+++++..+
T Consensus 177 LLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~~~-----------~aDri~vl~~G~i~~~g~~~el~~~ 243 (390)
T 3gd7_A 177 LLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEAML-----------ECDQFLVIEENKVRQYDSILELYHY 243 (390)
T ss_dssp EEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGGGT-----------TCSEEEEEETTEEEEESSHHHHHHC
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHHHH-----------hCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999997654 4666666653 3899999999987553 7999999999 99999999988744
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.95 E-value=4e-29 Score=221.28 Aligned_cols=161 Identities=19% Similarity=0.240 Sum_probs=115.3
Q ss_pred cEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCeeEEEecCCcccccc
Q 023563 52 MVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGRNVAVIKSNKDTRYG 121 (280)
Q Consensus 52 ~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~~i~~~~~~~~~~~~ 121 (280)
+|+++||+++|+ ++.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. +| .+++++|.... ..
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g-~i~~v~Q~~~~-~~ 79 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLL-SALLAEMDKVEGHVAIKG-SVAYVPQQAWI-QN 79 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTCSEEEEEEEEECS-CEEEECSSCCC-CS
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECC-EEEEEcCCCcC-CC
Confidence 699999999997 57899999999999999999999999999999 99999832 23 47888886532 11
Q ss_pred cceeee--------ecccccccccc----------------------cCchH-HHHH--HhhhhccCCCEEEEeCcccHH
Q 023563 122 LDSIVT--------HDGVKLPCCAL----------------------TTLSS-FRQK--FGSDAYDQVDVIGIDEAQFFE 168 (280)
Q Consensus 122 ~~~v~~--------~~~~~~~~~~~----------------------~~l~~-~~~~--~a~aL~~~p~lLlLDEP~~~~ 168 (280)
. .+.+ ........... ..++. ..++ .|+||+.+|++||||||++.+
T Consensus 80 ~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 158 (237)
T 2cbz_A 80 D-SLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 158 (237)
T ss_dssp E-EHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTS
T ss_pred c-CHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 0 0000 00000000000 11111 1122 278999999999999998765
Q ss_pred H------HHHHHH---HHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 169 D------LYDFCR---EAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 169 ~------i~~~l~---~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
| +++.|. ++ .+ |+|||++|||++++. .||++++|++ +++..|+++++.
T Consensus 159 D~~~~~~i~~~l~~~~~~-~~-~~tviivtH~~~~~~-----------~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 159 DAHVGKHIFENVIGPKGM-LK-NKTRILVTHSMSYLP-----------QVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp CHHHHHHHHHHTTSTTST-TT-TSEEEEECSCSTTGG-----------GSSEEEEEETTEEEEEECHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh-cC-CCEEEEEecChHHHH-----------hCCEEEEEeCCEEEEeCCHHHHh
Confidence 4 455553 22 23 899999999999874 7999999999 999999988876
No 35
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.95 E-value=2.3e-28 Score=213.53 Aligned_cols=156 Identities=12% Similarity=0.139 Sum_probs=110.1
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe-------eEEEecCC
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR-------NVAVIKSN 115 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~-------~i~~~~~~ 115 (280)
.+|+++|++++|++ .+|+|+||+|++||+++|+||||||||||+ ++|+|+.. +|. .+++++|.
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~ 86 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLL-KTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 86 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCC
Confidence 37999999999998 999999999999999999999999999999 99999732 332 35666665
Q ss_pred ccccc--ccceeee--------ecc--cccccccccCchHH-----------HHHH--hhhhccCCCEEEEeCcccH---
Q 023563 116 KDTRY--GLDSIVT--------HDG--VKLPCCALTTLSSF-----------RQKF--GSDAYDQVDVIGIDEAQFF--- 167 (280)
Q Consensus 116 ~~~~~--~~~~v~~--------~~~--~~~~~~~~~~l~~~-----------~~~~--a~aL~~~p~lLlLDEP~~~--- 167 (280)
..... .+...+. ... .....+...++..+ .++. |+||+.+|++||||||++.
T Consensus 87 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~ 166 (214)
T 1sgw_A 87 IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166 (214)
T ss_dssp CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCT
T ss_pred CcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCH
Confidence 43211 1000000 000 00011111222221 1111 6789999999999999654
Q ss_pred ---HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeecee
Q 023563 168 ---EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARC 219 (280)
Q Consensus 168 ---~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i 219 (280)
..+++.|++++++ |+|||++|||++++.. +||+++++..++
T Consensus 167 ~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~----------~~d~v~~~~~~~ 210 (214)
T 1sgw_A 167 DSKHKVLKSILEILKE-KGIVIISSREELSYCD----------VNENLHKYSTKI 210 (214)
T ss_dssp TTHHHHHHHHHHHHHH-HSEEEEEESSCCTTSS----------EEEEGGGGBC--
T ss_pred HHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEeCCcc
Confidence 4688999998876 9999999999999876 899998776543
No 36
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.95 E-value=2.1e-28 Score=219.98 Aligned_cols=162 Identities=18% Similarity=0.138 Sum_probs=113.4
Q ss_pred cEEEcCceEEeCC----eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc---ccccccc-
Q 023563 52 MVSPRPPLFSLQN----RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK---DTRYGLD- 123 (280)
Q Consensus 52 ~l~~~~ls~~y~~----~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~---~~~~~~~- 123 (280)
||+++|++++|++ +.+|+|+||+|+ |++++|+||||||||||+ ++|+|+......+.+..... ..+..++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLl-k~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLL-RAISGLLPYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHH-HHHTTSSCCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHH-HHHhCCCCCCcEEEECCEECcchHHhhheEE
Confidence 5899999999987 789999999999 999999999999999999 99999852222222211000 0012233
Q ss_pred eeeeeccc---------------------ccccccccCch-HHHHHH--------------hhhhccCCCEEEEeCcccH
Q 023563 124 SIVTHDGV---------------------KLPCCALTTLS-SFRQKF--------------GSDAYDQVDVIGIDEAQFF 167 (280)
Q Consensus 124 ~v~~~~~~---------------------~~~~~~~~~l~-~~~~~~--------------a~aL~~~p~lLlLDEP~~~ 167 (280)
+++|.... ....+...++. ++.++. |+||+.+|++||||||++.
T Consensus 79 ~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~ 158 (263)
T 2pjz_A 79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN 158 (263)
T ss_dssp CCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred EeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 33322110 00111122332 222221 6789999999999999776
Q ss_pred HH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccc-eEEEeec-eeccccCcceee
Q 023563 168 ED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLAD-SVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 168 ~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD-~i~~L~~-~i~~~g~~~~~~ 229 (280)
+| +++.|++++ . |||++|||++++.+ +|| ++++|++ ++++.|+++++.
T Consensus 159 LD~~~~~~l~~~L~~~~---~-tviivtHd~~~~~~----------~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 159 VDAARRHVISRYIKEYG---K-EGILVTHELDMLNL----------YKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp CCHHHHHHHHHHHHHSC---S-EEEEEESCGGGGGG----------CTTSEEEEEETTEEEEEEEHHHHH
T ss_pred cCHHHHHHHHHHHHHhc---C-cEEEEEcCHHHHHH----------hcCceEEEEECCEEEEecCHHHHH
Confidence 53 555555543 2 99999999999876 999 9999999 999999998876
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.94 E-value=4.1e-27 Score=232.82 Aligned_cols=165 Identities=18% Similarity=0.155 Sum_probs=117.9
Q ss_pred ccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------e
Q 023563 51 SMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------N 108 (280)
Q Consensus 51 ~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~ 108 (280)
.+|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+ ++|.|+.. +|. .
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll-~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIA-NLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 36999999999974 6799999999999999999999999999999 99999732 232 2
Q ss_pred EEEecCCccccc-ccceee--ee-cc----cccccccccCchHHHHH-------------------------HhhhhccC
Q 023563 109 VAVIKSNKDTRY-GLDSIV--TH-DG----VKLPCCALTTLSSFRQK-------------------------FGSDAYDQ 155 (280)
Q Consensus 109 i~~~~~~~~~~~-~~~~v~--~~-~~----~~~~~~~~~~l~~~~~~-------------------------~a~aL~~~ 155 (280)
+++++|+..... .+...+ .. .. .....+...++.++.++ .|||++.+
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~ 498 (582)
T 3b5x_A 419 FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRD 498 (582)
T ss_pred eEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcC
Confidence 445544432100 000000 00 00 00011111223222221 16899999
Q ss_pred CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
|++||||||++.. .+.+.|+++. + |+|+|++||+++.+. .||+|++|++ ++++.|+++++
T Consensus 499 p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b5x_A 499 APVLILDEATSALDTESERAIQAALDELQ-K-NKTVLVIAHRLSTIE-----------QADEILVVDEGEIIERGRHADL 565 (582)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-----------hCCEEEEEECCEEEEECCHHHH
Confidence 9999999997765 4777888775 3 899999999999885 7999999999 99999999988
Q ss_pred e
Q 023563 229 T 229 (280)
Q Consensus 229 ~ 229 (280)
.
T Consensus 566 ~ 566 (582)
T 3b5x_A 566 L 566 (582)
T ss_pred H
Confidence 6
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.94 E-value=3.6e-27 Score=233.22 Aligned_cols=165 Identities=15% Similarity=0.130 Sum_probs=118.9
Q ss_pred ccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------e
Q 023563 51 SMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------N 108 (280)
Q Consensus 51 ~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~ 108 (280)
.+|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+ ++|.|+.. +|. .
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl-~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIA-SLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHH-HHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHH-HHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 36999999999973 6899999999999999999999999999999 99999732 222 3
Q ss_pred EEEecCCccccc-ccceeee--e-cc----cccccccccCchHHHHH-------------------------HhhhhccC
Q 023563 109 VAVIKSNKDTRY-GLDSIVT--H-DG----VKLPCCALTTLSSFRQK-------------------------FGSDAYDQ 155 (280)
Q Consensus 109 i~~~~~~~~~~~-~~~~v~~--~-~~----~~~~~~~~~~l~~~~~~-------------------------~a~aL~~~ 155 (280)
+++++|+..... .+...+. . .. .....+...++.++.++ .|||++.+
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~ 498 (582)
T 3b60_A 419 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred CeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 555555432110 0000000 0 00 00011112233333222 16899999
Q ss_pred CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 156 VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 156 p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
|++||||||++.. .+.+.++++.+ |+|+|++||+++.+. .||+|++|++ ++++.|+++++
T Consensus 499 p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b60_A 499 SPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIE-----------QADEIVVVEDGIIVERGTHSEL 565 (582)
T ss_dssp CSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGTT-----------TCSEEEEEETTEEEEEECHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHHHHH-----------hCCEEEEEECCEEEEecCHHHH
Confidence 9999999997654 47888888753 899999999999875 7999999999 99999999887
Q ss_pred e
Q 023563 229 T 229 (280)
Q Consensus 229 ~ 229 (280)
.
T Consensus 566 ~ 566 (582)
T 3b60_A 566 L 566 (582)
T ss_dssp H
T ss_pred H
Confidence 6
No 39
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=8.3e-27 Score=230.94 Aligned_cols=165 Identities=14% Similarity=0.151 Sum_probs=117.4
Q ss_pred ccEEEcCceEEeC--CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC------------ee
Q 023563 51 SMVSPRPPLFSLQ--NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------------RN 108 (280)
Q Consensus 51 ~~l~~~~ls~~y~--~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------------~~ 108 (280)
..|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+ ++|.|+.. +| +.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll-~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLM-NLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHH-HTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 3699999999994 46799999999999999999999999999999 99999732 22 23
Q ss_pred EEEecCCccccc-ccceeee--ecc----cccccccccCchHH-----------------------HHHH--hhhhccCC
Q 023563 109 VAVIKSNKDTRY-GLDSIVT--HDG----VKLPCCALTTLSSF-----------------------RQKF--GSDAYDQV 156 (280)
Q Consensus 109 i~~~~~~~~~~~-~~~~v~~--~~~----~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p 156 (280)
+++++|+...-. .+...+. ... .........++.++ +++. |||++.+|
T Consensus 419 i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p 498 (587)
T 3qf4_A 419 ISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP 498 (587)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCC
T ss_pred eEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCC
Confidence 555555432110 0000000 000 00000111111111 1121 78999999
Q ss_pred CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++|||||||+.. .+.+.++++. + |+|+|++||+++.+. .||+|++|++ ++++.|+++++.
T Consensus 499 ~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~-----------~~d~i~vl~~G~i~~~g~~~el~ 565 (587)
T 3qf4_A 499 KVLILDDCTSSVDPITEKRILDGLKRYT-K-GCTTFIITQKIPTAL-----------LADKILVLHEGKVAGFGTHKELL 565 (587)
T ss_dssp SEEEEESCCTTSCHHHHHHHHHHHHHHS-T-TCEEEEEESCHHHHT-----------TSSEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHhC-C-CCEEEEEecChHHHH-----------hCCEEEEEECCEEEEECCHHHHH
Confidence 999999997754 4777777764 3 899999999999885 7999999999 999999999987
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.93 E-value=1.5e-26 Score=229.23 Aligned_cols=163 Identities=18% Similarity=0.224 Sum_probs=115.5
Q ss_pred EEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563 53 VSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV 109 (280)
Q Consensus 53 l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i 109 (280)
|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+ ++|.|+.. +|. .+
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl-~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i 420 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVL-SLLLRLYDPASGTISLDGHDIRQLNPVWLRSKI 420 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHH-HHHTTSSCCSEEEEEETTEETTTBCHHHHHHSE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCcEEEECCEEhhhCCHHHHHhce
Confidence 999999999974 4799999999999999999999999999999 99999732 222 35
Q ss_pred EEecCCccccc-ccceeee--ecc-------cccccccccCchHHH-----------------------HHH--hhhhcc
Q 023563 110 AVIKSNKDTRY-GLDSIVT--HDG-------VKLPCCALTTLSSFR-----------------------QKF--GSDAYD 154 (280)
Q Consensus 110 ~~~~~~~~~~~-~~~~v~~--~~~-------~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~ 154 (280)
++++|+..... .+...+. ... .....+...++.++. +|. ||||+.
T Consensus 421 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~ 500 (595)
T 2yl4_A 421 GTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 500 (595)
T ss_dssp EEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred EEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc
Confidence 56655432100 0000000 000 000011111222221 111 789999
Q ss_pred CCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcce
Q 023563 155 QVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAF 227 (280)
Q Consensus 155 ~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~ 227 (280)
+|++||||||++.. .+.+.|+++.+ |+|+|++||+++.+. .||+|++|++ ++++.|++++
T Consensus 501 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-----------~~d~i~~l~~G~i~~~g~~~~ 567 (595)
T 2yl4_A 501 NPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLSTIK-----------NANMVAVLDQGKITEYGKHEE 567 (595)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHHHHH-----------HSSEEEEEETTEEEEEECSCC
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHH-----------cCCEEEEEECCEEEEECCHHH
Confidence 99999999997654 47788888765 899999999999885 6999999999 9999999999
Q ss_pred ee
Q 023563 228 FT 229 (280)
Q Consensus 228 ~~ 229 (280)
+.
T Consensus 568 l~ 569 (595)
T 2yl4_A 568 LL 569 (595)
T ss_dssp --
T ss_pred HH
Confidence 87
No 41
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.93 E-value=1.9e-27 Score=216.67 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=103.9
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-------CCeeEEEecCCccccc-cc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-------KGRNVAVIKSNKDTRY-GL 122 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-------~g~~i~~~~~~~~~~~-~~ 122 (280)
++|+++||++.+ +.+|+|+||+|++|++++|+||||||||||+ ++|+|+.. ....++|++|...... .+
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~tv 115 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLL-MMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTI 115 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHH-HHHTTSSCEEEEEEECCSCEEEECSSCCCCSSBH
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEECCEEEEEeCCCccCcccH
Confidence 479999999863 5799999999999999999999999999999 99999832 1225788888653211 11
Q ss_pred ceeee---ecc-cccccccccCchHH-----------------------HHH--HhhhhccCCCEEEEeCcccHHH----
Q 023563 123 DSIVT---HDG-VKLPCCALTTLSSF-----------------------RQK--FGSDAYDQVDVIGIDEAQFFED---- 169 (280)
Q Consensus 123 ~~v~~---~~~-~~~~~~~~~~l~~~-----------------------~~~--~a~aL~~~p~lLlLDEP~~~~~---- 169 (280)
...+. ... .....+...++.+. .++ .|+||+.+|++||||||++.+|
T Consensus 116 ~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~ 195 (290)
T 2bbs_A 116 KENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 195 (290)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred HHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHH
Confidence 11000 000 00000001111111 111 1789999999999999987654
Q ss_pred --HHHHH-HHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 170 --LYDFC-REAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 170 --i~~~l-~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+++.+ +++ .+ |+|||++|||++++. .||++++|++ ++++.|+++++.
T Consensus 196 ~~i~~~ll~~~-~~-~~tviivtHd~~~~~-----------~~d~i~~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 196 KEIFESCVCKL-MA-NKTRILVTSKMEHLK-----------KADKILILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp HHHHHHCCCCC-TT-TSEEEEECCCHHHHH-----------HSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHh-hC-CCEEEEEecCHHHHH-----------cCCEEEEEECCeEEEeCCHHHHh
Confidence 44432 233 23 899999999999874 6999999999 999999988875
No 42
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.93 E-value=6.8e-27 Score=231.09 Aligned_cols=164 Identities=12% Similarity=0.140 Sum_probs=117.1
Q ss_pred cEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eE
Q 023563 52 MVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NV 109 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i 109 (280)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+ ++|.|+.. +|. .+
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll-~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLI-NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHH-TTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHH-HHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 5999999999964 5799999999999999999999999999999 99999732 332 35
Q ss_pred EEecCCccccc-ccceeee--ecc----cccccccccCchHH-----------------------HHHH--hhhhccCCC
Q 023563 110 AVIKSNKDTRY-GLDSIVT--HDG----VKLPCCALTTLSSF-----------------------RQKF--GSDAYDQVD 157 (280)
Q Consensus 110 ~~~~~~~~~~~-~~~~v~~--~~~----~~~~~~~~~~l~~~-----------------------~~~~--a~aL~~~p~ 157 (280)
++++|+...-. .+...+. ... .........++.++ ++|. |||++.+|+
T Consensus 418 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ 497 (578)
T 4a82_A 418 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 497 (578)
T ss_dssp EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred EEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 66666542210 0000000 000 00001111111111 1111 789999999
Q ss_pred EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 158 VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 158 lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+||||||++.. .+.+.++++.+ ++|+|++||+++.+. .||+|++|++ ++++.|+++++.
T Consensus 498 illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-----------~~d~i~~l~~G~i~~~g~~~el~ 563 (578)
T 4a82_A 498 ILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLSTIT-----------HADKIVVIENGHIVETGTHRELI 563 (578)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGGGTT-----------TCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-----------cCCEEEEEECCEEEEECCHHHHH
Confidence 99999997764 46777777743 799999999999875 6999999999 999999999887
No 43
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.93 E-value=1.6e-26 Score=226.77 Aligned_cols=168 Identities=14% Similarity=0.086 Sum_probs=123.8
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-------CCeeEEEecCCccccc--
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-------KGRNVAVIKSNKDTRY-- 120 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-------~g~~i~~~~~~~~~~~-- 120 (280)
.++++++|+++.|++. .|+++||+|++||++||+||||||||||+ ++|.|+.. ....+++++|+.....
T Consensus 285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLl-k~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~ 362 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFV-KMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEG 362 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHH-HHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSS
T ss_pred CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECceEEEEecCCcCCCCC
Confidence 4689999999999875 69999999999999999999999999999 99999743 1346888888754321
Q ss_pred ccceeeeec--------ccccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH------HHHH
Q 023563 121 GLDSIVTHD--------GVKLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DLYD 172 (280)
Q Consensus 121 ~~~~v~~~~--------~~~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i~~ 172 (280)
.+..++... ......+...++....++. |++|+.+|++|||||||+.+ .+++
T Consensus 363 tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~ 442 (538)
T 1yqt_A 363 TVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 442 (538)
T ss_dssp BHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred cHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHH
Confidence 111111000 0001112222332222211 67899999999999997654 4788
Q ss_pred HHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec---eeccccCcceee
Q 023563 173 FCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA---RCEFCGKRAFFT 229 (280)
Q Consensus 173 ~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~---~i~~~g~~~~~~ 229 (280)
+|++++++.|.|||+||||++++.+ +||+|++|++ +++..|+|+++.
T Consensus 443 ~l~~l~~~~g~tvi~vsHd~~~~~~----------~~drv~vl~~~~~~~~~~g~~~~~~ 492 (538)
T 1yqt_A 443 AIRHLMEKNEKTALVVEHDVLMIDY----------VSDRLMVFEGEPGKYGRALPPMGMR 492 (538)
T ss_dssp HHHHHHHHHTCEEEEECSCHHHHHH----------HCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHH----------hCCEEEEEeCCcceEeecCCHHHHH
Confidence 8998875559999999999999986 9999999986 455688998876
No 44
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.93 E-value=8.7e-27 Score=231.21 Aligned_cols=164 Identities=17% Similarity=0.163 Sum_probs=118.8
Q ss_pred cEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------eEE
Q 023563 52 MVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------NVA 110 (280)
Q Consensus 52 ~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~i~ 110 (280)
-|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+ ++|.|+.. +|. .++
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll-~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIV-NLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHH-HHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 5999999999964 6799999999999999999999999999999 99999732 332 356
Q ss_pred EecCCccccc-ccceee--ee----cccccccccccCchHHH-----------------------HHH--hhhhccCCCE
Q 023563 111 VIKSNKDTRY-GLDSIV--TH----DGVKLPCCALTTLSSFR-----------------------QKF--GSDAYDQVDV 158 (280)
Q Consensus 111 ~~~~~~~~~~-~~~~v~--~~----~~~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p~l 158 (280)
+++|+...-. .+...+ .. +......+...++.++. ++. |||++.+|++
T Consensus 433 ~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i 512 (598)
T 3qf4_B 433 IVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512 (598)
T ss_dssp EECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE
T ss_pred EEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 6666543210 000000 00 00000111111222211 111 7899999999
Q ss_pred EEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 159 IGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 159 LlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
|||||||+.. .+.+.++++. + |+|+|++||+++.+. .||+|++|++ ++++.|+++++.
T Consensus 513 lllDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~-----------~~d~i~~l~~G~i~~~g~~~~l~ 577 (598)
T 3qf4_B 513 LILDEATSNVDTKTEKSIQAAMWKLM-E-GKTSIIIAHRLNTIK-----------NADLIIVLRDGEIVEMGKHDELI 577 (598)
T ss_dssp EEECCCCTTCCHHHHHHHHHHHHHHH-T-TSEEEEESCCTTHHH-----------HCSEEEEECSSSEEECSCHHHHH
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-----------cCCEEEEEECCEEEEECCHHHHH
Confidence 9999997754 4778888875 3 999999999999886 6999999999 999999999987
No 45
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.93 E-value=2.8e-26 Score=224.96 Aligned_cols=156 Identities=13% Similarity=0.091 Sum_probs=115.3
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCeeEEEecCCcccccc
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGRNVAVIKSNKDTRYG 121 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i~~~~~~~~~~~~ 121 (280)
.++++++|+++.|++. .|+++||+|++||++||+||||||||||+ ++|+|+. ..+..+++++|.......
T Consensus 267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~ 344 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFA-RILVGEITADEGSVTPEKQILSYKPQRIFPNYD 344 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHH-HHHTTSSCCSBCCEESSCCCEEEECSSCCCCCS
T ss_pred cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCeeeEeechhcccccC
Confidence 4689999999999884 57888999999999999999999999999 9999973 356678888776432111
Q ss_pred --cceeeee--ccc-------ccccccccCchHHHHHH--------------hhhhccCCCEEEEeCcccHH------HH
Q 023563 122 --LDSIVTH--DGV-------KLPCCALTTLSSFRQKF--------------GSDAYDQVDVIGIDEAQFFE------DL 170 (280)
Q Consensus 122 --~~~v~~~--~~~-------~~~~~~~~~l~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~------~i 170 (280)
+...+.. ... ....+...++..+.++. |++|+.+|++|||||||+.+ ++
T Consensus 345 ~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i 424 (538)
T 3ozx_A 345 GTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIV 424 (538)
T ss_dssp SBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH
T ss_pred CCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH
Confidence 1100000 000 01112222332222211 78999999999999997654 57
Q ss_pred HHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 171 YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 171 ~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
+++|++++++.|+|||+||||++++.+ +||||++|++
T Consensus 425 ~~~l~~l~~~~g~tvi~vsHdl~~~~~----------~aDri~vl~~ 461 (538)
T 3ozx_A 425 AKAIKRVTRERKAVTFIIDHDLSIHDY----------IADRIIVFKG 461 (538)
T ss_dssp HHHHHHHHHHTTCEEEEECSCHHHHHH----------HCSEEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHH----------hCCEEEEEeC
Confidence 889999987679999999999999987 9999999987
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.93 E-value=3.4e-26 Score=227.17 Aligned_cols=168 Identities=15% Similarity=0.097 Sum_probs=122.8
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-------CCeeEEEecCCcccccc-
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-------KGRNVAVIKSNKDTRYG- 121 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-------~g~~i~~~~~~~~~~~~- 121 (280)
.++++++|++++|++. .|+++||+|++||++||+||||||||||+ ++|+|+.. ....++|++|+......
T Consensus 355 ~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLl-k~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~ 432 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFV-KMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG 432 (607)
T ss_dssp CEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHH-HHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSS
T ss_pred ceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEEeeEEEEEecCccCCCCC
Confidence 4689999999999875 68999999999999999999999999999 99999732 13468888887543211
Q ss_pred -cceeeeec--------ccccccccccCchHHHHH--------------HhhhhccCCCEEEEeCcccHH------HHHH
Q 023563 122 -LDSIVTHD--------GVKLPCCALTTLSSFRQK--------------FGSDAYDQVDVIGIDEAQFFE------DLYD 172 (280)
Q Consensus 122 -~~~v~~~~--------~~~~~~~~~~~l~~~~~~--------------~a~aL~~~p~lLlLDEP~~~~------~i~~ 172 (280)
+..++... ......+...++.++.++ .|++|+.+|++|||||||+.+ .+++
T Consensus 433 tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~ 512 (607)
T 3bk7_A 433 TVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 512 (607)
T ss_dssp BHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred cHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHH
Confidence 11111000 000011111122221111 167899999999999997654 5788
Q ss_pred HHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec---eeccccCcceee
Q 023563 173 FCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA---RCEFCGKRAFFT 229 (280)
Q Consensus 173 ~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~---~i~~~g~~~~~~ 229 (280)
+|++++++.|.|||+||||++++.+ +||+|++|++ ++...|+|+++.
T Consensus 513 ~l~~l~~~~g~tvi~vsHd~~~~~~----------~adrv~vl~~~~g~~~~~g~p~~~~ 562 (607)
T 3bk7_A 513 AIRHLMEKNEKTALVVEHDVLMIDY----------VSDRLIVFEGEPGRHGRALPPMGMR 562 (607)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHH----------HCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHH----------hCCEEEEEcCCcceEEecCCHHHHH
Confidence 9999876569999999999999986 9999999985 345678998876
No 47
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.8e-25 Score=220.56 Aligned_cols=164 Identities=17% Similarity=0.175 Sum_probs=117.6
Q ss_pred EcCceEEeCC-eeeeEeeeeEeeCc-----eEEEEEcCCCCcHHHHHHHHHhcchh--CC-----eeEEEecCCcccccc
Q 023563 55 PRPPLFSLQN-RNLHSEASVSSPSG-----EIHVIVGPMFAGKTTTLLRRIQAETQ--KG-----RNVAVIKSNKDTRYG 121 (280)
Q Consensus 55 ~~~ls~~y~~-~~vl~~isl~i~~G-----ei~~liGpNGsGKSTLl~~~l~gl~~--~g-----~~i~~~~~~~~~~~~ 121 (280)
.++++++|++ ..+++++||++.+| |++||+||||||||||+ ++|+|+.. .| ..+++++|.....+.
T Consensus 349 ~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLl-k~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 349 SASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLI-KLLAGALKPDEGQDIPKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp SSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHH-HHHHTSSCCSBCCCCCSCCEEEECSSCCCCCC
T ss_pred ccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHH-HHHhcCCCCCCCcCccCCcEEEecccccccCC
Confidence 3778899976 46899999999999 78999999999999999 99999843 22 357777776432211
Q ss_pred --cceeee---eccc-----ccccccccCchHH------------HHH--HhhhhccCCCEEEEeCcccHH------HHH
Q 023563 122 --LDSIVT---HDGV-----KLPCCALTTLSSF------------RQK--FGSDAYDQVDVIGIDEAQFFE------DLY 171 (280)
Q Consensus 122 --~~~v~~---~~~~-----~~~~~~~~~l~~~------------~~~--~a~aL~~~p~lLlLDEP~~~~------~i~ 171 (280)
+...+. .... ....+...++.++ .++ .|++|+.+|++|||||||+.+ .++
T Consensus 428 ~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~ 507 (608)
T 3j16_B 428 GTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICS 507 (608)
T ss_dssp SBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHH
T ss_pred ccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHH
Confidence 100000 0000 0001111111111 111 178999999999999997754 478
Q ss_pred HHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec---eeccccCcceee
Q 023563 172 DFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA---RCEFCGKRAFFT 229 (280)
Q Consensus 172 ~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~---~i~~~g~~~~~~ 229 (280)
++|++++++.|+|||+||||++++.+ +||||++|++ ++++.|+|+++.
T Consensus 508 ~ll~~l~~~~g~tviivtHdl~~~~~----------~aDrvivl~~~~g~~~~~g~p~~~~ 558 (608)
T 3j16_B 508 KVIRRFILHNKKTAFIVEHDFIMATY----------LADKVIVFEGIPSKNAHARAPESLL 558 (608)
T ss_dssp HHHHHHHHHHTCEEEEECSCHHHHHH----------HCSEEEECEEETTTEEECCCCEEHH
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHH----------hCCEEEEEeCCCCeEEecCChHHHh
Confidence 88999876559999999999999986 9999999985 678899999987
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.91 E-value=9.2e-25 Score=216.92 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=105.3
Q ss_pred cEEE--------cCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CCeeEE--------Ee
Q 023563 52 MVSP--------RPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVA--------VI 112 (280)
Q Consensus 52 ~l~~--------~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~--------~~ 112 (280)
+|++ +||+++|+++ .+|+++| +|++||++||+||||||||||+ ++|+|+.. .|. +. .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLl-kiL~Gll~p~~G~-~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAV-KILAGQLIPNLCE-DNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHH-HHHTTSSCCCTTT-TCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHH-HHHhCCCCCCCCc-cccccchhhhee
Confidence 5788 9999999876 4999999 9999999999999999999999 99999742 222 10 00
Q ss_pred cCCc---------ccccccceeeeecc---------------------cccccccccCchHHHHHH--------------
Q 023563 113 KSNK---------DTRYGLDSIVTHDG---------------------VKLPCCALTTLSSFRQKF-------------- 148 (280)
Q Consensus 113 ~~~~---------~~~~~~~~v~~~~~---------------------~~~~~~~~~~l~~~~~~~-------------- 148 (280)
.... ..+..+..+++... .....+...++.++.++.
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaI 239 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAI 239 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHH
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHH
Confidence 0000 00011111111100 000111112222222211
Q ss_pred hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeece
Q 023563 149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTAR 218 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~ 218 (280)
|+||+.+|++|||||||+.+ .++++|++++++ |.|||+||||++++.+ +||+|++|+++
T Consensus 240 AraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvIivsHdl~~~~~----------~adri~vl~~~ 304 (607)
T 3bk7_A 240 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHDLAVLDY----------LSDVIHVVYGE 304 (607)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHH----------HCSEEEEEESC
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEecChHHHHh----------hCCEEEEECCC
Confidence 67899999999999997754 478899999875 9999999999999986 99999999874
No 49
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.91 E-value=2.2e-24 Score=222.62 Aligned_cols=163 Identities=15% Similarity=0.148 Sum_probs=112.5
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC------eeEEEecCCccc---cccc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG------RNVAVIKSNKDT---RYGL 122 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g------~~i~~~~~~~~~---~~~~ 122 (280)
-|...|++++|+++.+|+|+||+|++|++++|+||||||||||+ ++|+|-.+.| ..+.+++|.... ...+
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLL-k~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLM-RAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHHTCSTTCCCTTTSCEEETTCCCCCCCTTSBH
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCcCCCccccceeEEEEcccccccccCCcH
Confidence 46677999999999999999999999999999999999999999 9887422222 134555543211 1111
Q ss_pred ceeeee-----cccccccccccCc-hHHHHHH--------------hhhhccCCCEEEEeCcccHHH------HHHHHHH
Q 023563 123 DSIVTH-----DGVKLPCCALTTL-SSFRQKF--------------GSDAYDQVDVIGIDEAQFFED------LYDFCRE 176 (280)
Q Consensus 123 ~~v~~~-----~~~~~~~~~~~~l-~~~~~~~--------------a~aL~~~p~lLlLDEP~~~~~------i~~~l~~ 176 (280)
...+.. .......+...++ ..+.++. |++|+.+|++||||||++.+| ++++|++
T Consensus 514 ~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~ 593 (986)
T 2iw3_A 514 LDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593 (986)
T ss_dssp HHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh
Confidence 010000 0001112223344 2232222 678999999999999987654 4555544
Q ss_pred HHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eec-cccCcceee
Q 023563 177 AADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCE-FCGKRAFFT 229 (280)
Q Consensus 177 l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~-~~g~~~~~~ 229 (280)
.|.|||++|||++++.+ +||+|++|++ +++ +.|+++++.
T Consensus 594 ----~g~tvIivSHdl~~l~~----------~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 594 ----CGITSITISHDSVFLDN----------VCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp ----SCSEEEEECSCHHHHHH----------HCSEEEEEETTEEEEEESCHHHHH
T ss_pred ----CCCEEEEEECCHHHHHH----------hCCEEEEEECCeeecCCCCHHHHH
Confidence 49999999999999986 9999999999 875 578776654
No 50
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.90 E-value=4.6e-25 Score=235.59 Aligned_cols=165 Identities=17% Similarity=0.178 Sum_probs=117.7
Q ss_pred cEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------e
Q 023563 52 MVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------N 108 (280)
Q Consensus 52 ~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~ 108 (280)
-|+++||+++|++ .+||+||||+|++||.+||+||||||||||+ ++|.|+.. +|. .
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~-~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVV-ALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHH-HHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHH-HHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 5999999999954 4699999999999999999999999999999 99999732 332 3
Q ss_pred EEEecCCccc-----ccccceeeeecc----cccccccccCchHHH-----------------------HHH--hhhhcc
Q 023563 109 VAVIKSNKDT-----RYGLDSIVTHDG----VKLPCCALTTLSSFR-----------------------QKF--GSDAYD 154 (280)
Q Consensus 109 i~~~~~~~~~-----~~~~~~v~~~~~----~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~ 154 (280)
+++++|++.. +.++.+-..... ....++...++.++. ++. ||||+.
T Consensus 1155 i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr 1234 (1321)
T 4f4c_A 1155 IAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR 1234 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS
T ss_pred eEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh
Confidence 5566665432 111100000000 000111111222221 111 789999
Q ss_pred CCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcce
Q 023563 155 QVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAF 227 (280)
Q Consensus 155 ~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~ 227 (280)
+|++|||||||+..| +.+.|+++.+ |+|+|+|+|.++.+. .||+|++|++ ++++.|++++
T Consensus 1235 ~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~--~~TvI~IAHRLsTi~-----------~aD~I~Vld~G~IvE~Gth~e 1301 (1321)
T 4f4c_A 1235 NPKILLLDEATSALDTESEKVVQEALDRARE--GRTCIVIAHRLNTVM-----------NADCIAVVSNGTIIEKGTHTQ 1301 (1321)
T ss_dssp CCSEEEEESCCCSTTSHHHHHHHHHHTTTSS--SSEEEEECSSSSTTT-----------TCSEEEEESSSSEEEEECHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHcC--CCEEEEeccCHHHHH-----------hCCEEEEEECCEEEEECCHHH
Confidence 999999999988764 5555555543 899999999999886 6999999999 9999999999
Q ss_pred eee
Q 023563 228 FTL 230 (280)
Q Consensus 228 ~~~ 230 (280)
++.
T Consensus 1302 Ll~ 1304 (1321)
T 4f4c_A 1302 LMS 1304 (1321)
T ss_dssp HHH
T ss_pred HHh
Confidence 983
No 51
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=99.90 E-value=6.9e-24 Score=182.07 Aligned_cols=175 Identities=46% Similarity=0.751 Sum_probs=148.6
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ 155 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~ 155 (280)
..|+++.|.||+||||||.|++.+..+...++++.++.+..+.|+. ..+..+.+...++.......++.+. ..+
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~-~~i~S~~g~~~~A~~~~~~~d~~~~-----~~~ 91 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQE-----ALG 91 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG-GSCCHHHHHHSEEEEESSGGGGHHH-----HHT
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch-hhhhhccCCcccceecCCHHHHHHh-----ccC
Confidence 3689999999999999977768888888889999999988777776 4466665554455445556666553 246
Q ss_pred CCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeecCC
Q 023563 156 VDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTEE 235 (280)
Q Consensus 156 p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~~~ 235 (280)
.++|++||.+|..++.+.+..+++ .|+.||+.++|.++-.++|+++.+|+++||+|.-|+..|..||.++....|..++
T Consensus 92 ~DvIlIDEaQFfk~~ve~~~~L~~-~gk~VI~~GL~~DF~~~~F~~~~~Ll~~Ad~v~kl~aiC~~Cg~~A~~~~R~~~~ 170 (195)
T 1w4r_A 92 VAVIGIDEGQFFPDIVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTE 170 (195)
T ss_dssp CSEEEESSGGGCTTHHHHHHHHHH-TTCEEEEEEESBCTTSSBCTTGGGGGGGCSEEEECCEECTTTCSEECEEEESSCC
T ss_pred CCEEEEEchhhhHHHHHHHHHHHH-CCCeEEEEecccccccccchhHHHHHHhcCeEEEeeeEecccCCeeeeEEEEcCC
Confidence 899999999877778888888886 4999999999999999999999999999999999999999999999999998877
Q ss_pred CcEEEeCCccceeeeccchhcc
Q 023563 236 TKTELIGGSDIYMPVCRQHYVS 257 (280)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~ 257 (280)
..+.++|+.+.|.++||+||..
T Consensus 171 ~~~i~IGg~e~Y~~~CR~c~~~ 192 (195)
T 1w4r_A 171 KEVEVIGGADKYHSVCRLCYFK 192 (195)
T ss_dssp CSSCCCCCTTTEEEECHHHHTC
T ss_pred CCEEEECCCCcEEEccHHHhhc
Confidence 7788899999999999999964
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.90 E-value=1.6e-24 Score=212.56 Aligned_cols=152 Identities=14% Similarity=0.095 Sum_probs=101.4
Q ss_pred EEE-cCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CCeeEE--------EecCCc----
Q 023563 53 VSP-RPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVA--------VIKSNK---- 116 (280)
Q Consensus 53 l~~-~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~--------~~~~~~---- 116 (280)
.++ +||+|+|+++ .+|+++| +|++||++||+||||||||||+ ++|+|+.. .|. +. .+....
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLl-k~l~Gl~~p~~G~-~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAV-KILAGQLIPNLCG-DNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHH-HHHHTSSCCCTTT-TCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCc-cCcchhhhHHhhCCccHHHH
Confidence 455 6899999886 4999999 9999999999999999999999 99999742 222 10 000000
Q ss_pred -----ccccccceeeeeccc---------------------ccccccccCchHHHHH--------------HhhhhccCC
Q 023563 117 -----DTRYGLDSIVTHDGV---------------------KLPCCALTTLSSFRQK--------------FGSDAYDQV 156 (280)
Q Consensus 117 -----~~~~~~~~v~~~~~~---------------------~~~~~~~~~l~~~~~~--------------~a~aL~~~p 156 (280)
..+..+..+++.... ....+...++....++ .|+||+.+|
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P 177 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNA 177 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 000111111111000 0001111122111111 167899999
Q ss_pred CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeece
Q 023563 157 DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTAR 218 (280)
Q Consensus 157 ~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~ 218 (280)
++|||||||+.+ .++++|++++++ |.|||+||||++++.+ +||+|++|++.
T Consensus 178 ~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvi~vsHd~~~~~~----------~~dri~vl~~~ 234 (538)
T 1yqt_A 178 TFYFFDEPSSYLDIRQRLNAARAIRRLSEE-GKSVLVVEHDLAVLDY----------LSDIIHVVYGE 234 (538)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHH----------HCSEEEEEEEE
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH----------hCCEEEEEcCc
Confidence 999999997764 478899999875 9999999999999986 99999999873
No 53
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.90 E-value=2.7e-24 Score=229.08 Aligned_cols=164 Identities=18% Similarity=0.157 Sum_probs=116.6
Q ss_pred cEEEcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CCe------------e
Q 023563 52 MVSPRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KGR------------N 108 (280)
Q Consensus 52 ~l~~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g~------------~ 108 (280)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+ ++|.|+.. +|. .
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~-~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTV-QLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHH-HHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 5999999999964 4699999999999999999999999999999 99999732 333 3
Q ss_pred EEEecCCcccccc-cceee--eecc----ccccccccc----------------------CchH-HHHH--HhhhhccCC
Q 023563 109 VAVIKSNKDTRYG-LDSIV--THDG----VKLPCCALT----------------------TLSS-FRQK--FGSDAYDQV 156 (280)
Q Consensus 109 i~~~~~~~~~~~~-~~~v~--~~~~----~~~~~~~~~----------------------~l~~-~~~~--~a~aL~~~p 156 (280)
+++++|++..-.. +...+ .... ....+.... +++. .+++ .||||+.+|
T Consensus 466 i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p 545 (1284)
T 3g5u_A 466 IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNP 545 (1284)
T ss_dssp EEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCC
T ss_pred eEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCC
Confidence 6667666432100 00000 0000 000000111 1111 1112 278999999
Q ss_pred CEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++|||||||+..| +.+.++++. + |+|+|+|||+++.+. .||+|++|++ ++++.|+++++.
T Consensus 546 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~i~-----------~~d~i~vl~~G~i~~~g~~~~l~ 612 (1284)
T 3g5u_A 546 KILLLDEATSALDTESEAVVQAALDKAR-E-GRTTIVIAHRLSTVR-----------NADVIAGFDGGVIVEQGNHDELM 612 (1284)
T ss_dssp SEEEEESTTCSSCHHHHHHHHHHHHHHH-T-TSEEEEECSCHHHHT-----------TCSEEEECSSSCCCCEECHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-----------cCCEEEEEECCEEEEECCHHHHH
Confidence 9999999987653 566666654 3 999999999999986 5999999999 999999998876
No 54
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.90 E-value=4.8e-24 Score=227.75 Aligned_cols=164 Identities=17% Similarity=0.213 Sum_probs=120.2
Q ss_pred cEEEcCceEEeC---CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch--------hCCe------------e
Q 023563 52 MVSPRPPLFSLQ---NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET--------QKGR------------N 108 (280)
Q Consensus 52 ~l~~~~ls~~y~---~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~--------~~g~------------~ 108 (280)
-|+++||+++|+ ++++|+|+||+|++|+.++|+||+|||||||+ ++|.|+. ++|. .
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll-~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTII-SLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHH-HHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHH-HHhccccccccCcccCCCccchhccHHHHhhc
Confidence 599999999995 36799999999999999999999999999999 9999973 2332 4
Q ss_pred EEEecCCcccccc-ccee--eeec----ccccccccccCchHHH-----------------------HHH--hhhhccCC
Q 023563 109 VAVIKSNKDTRYG-LDSI--VTHD----GVKLPCCALTTLSSFR-----------------------QKF--GSDAYDQV 156 (280)
Q Consensus 109 i~~~~~~~~~~~~-~~~v--~~~~----~~~~~~~~~~~l~~~~-----------------------~~~--a~aL~~~p 156 (280)
+++++|++....+ +... +... .....+....++.++. +|. |||++.+|
T Consensus 494 i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~ 573 (1321)
T 4f4c_A 494 VAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNP 573 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCC
T ss_pred ccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCC
Confidence 6777776532110 0000 0000 0001111112222222 222 78999999
Q ss_pred CEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 157 DVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 157 ~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
++||||||++..| +.+.|.++.+ |+|+|+|||+++.+. .||+|++|++ ++++.|+.+++.
T Consensus 574 ~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls~i~-----------~aD~Iivl~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 574 KILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLSTIR-----------NADLIISCKNGQVVEVGDHRALM 640 (1321)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTTTTT-----------TCSEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHHHHH-----------hCCEEEEeeCCeeeccCCHHHHH
Confidence 9999999977653 7777877764 999999999999886 7999999999 999999999886
No 55
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.90 E-value=1.5e-24 Score=231.08 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=115.2
Q ss_pred ccEEEcCceEEeCCe---eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--------CC------------e
Q 023563 51 SMVSPRPPLFSLQNR---NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--------KG------------R 107 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~---~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--------~g------------~ 107 (280)
..|+++||+++|+++ ++|+|+||+|++||++||+||||||||||+ ++|.|+.. +| +
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~-~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVV-QLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHH-HHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence 359999999999753 699999999999999999999999999999 99999732 22 2
Q ss_pred eEEEecCCccccc-ccceee--eec------ccccccccccC----------------------chH-HHHH--Hhhhhc
Q 023563 108 NVAVIKSNKDTRY-GLDSIV--THD------GVKLPCCALTT----------------------LSS-FRQK--FGSDAY 153 (280)
Q Consensus 108 ~i~~~~~~~~~~~-~~~~v~--~~~------~~~~~~~~~~~----------------------l~~-~~~~--~a~aL~ 153 (280)
.+++++|++.... .+...+ ... ..........+ ++. -+++ .||||+
T Consensus 1108 ~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~ 1187 (1284)
T 3g5u_A 1108 QLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALV 1187 (1284)
T ss_dssp SCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHH
T ss_pred ceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHH
Confidence 3455555432100 000000 000 00000000001 111 1111 178999
Q ss_pred cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563 154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~ 226 (280)
.+|++|||||||+.. .+.+.|+++. + |+|+|+||||++++. .||||++|++ ++++.|+++
T Consensus 1188 ~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~-~~tvi~isH~l~~i~-----------~~dri~vl~~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1188 RQPHILLLDEATSALDTESEKVVQEALDKAR-E-GRTCIVIAHRLSTIQ-----------NADLIVVIQNGKVKEHGTHQ 1254 (1284)
T ss_dssp HCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-S-SSCEEEECSCTTGGG-----------SCSEEEEEETBEEEEEECHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-C-CCEEEEEecCHHHHH-----------cCCEEEEEECCEEEEECCHH
Confidence 999999999998764 3667776643 3 899999999999885 6999999999 999999999
Q ss_pred eee
Q 023563 227 FFT 229 (280)
Q Consensus 227 ~~~ 229 (280)
++.
T Consensus 1255 ~l~ 1257 (1284)
T 3g5u_A 1255 QLL 1257 (1284)
T ss_dssp HHH
T ss_pred HHH
Confidence 987
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.89 E-value=7.8e-24 Score=218.49 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=49.4
Q ss_pred CccEEEcCceEEeCC--eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 50 HSMVSPRPPLFSLQN--RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~--~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
.++|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+ ++|.|+.
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLL-klLaGll 723 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLI-NVLTGEL 723 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHH-HHHTTSS
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCC
Confidence 468999999999965 6799999999999999999999999999999 9999974
No 57
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=99.88 E-value=1.5e-22 Score=176.04 Aligned_cols=179 Identities=34% Similarity=0.601 Sum_probs=140.4
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ 155 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~ 155 (280)
..|.+..|.||+||||||.+++.+..+...+.++..+.+..+.|+....+..+.+...++.......++.+. +..+
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~----i~~~ 101 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTH----DLTN 101 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGS----CCTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHH----HhcC
Confidence 568999999999999999554778777788888888887777777766777777776666555555555432 2368
Q ss_pred CCEEEEeCcccHH-HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeecC
Q 023563 156 VDVIGIDEAQFFE-DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE 234 (280)
Q Consensus 156 p~lLlLDEP~~~~-~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~~ 234 (280)
++++++||.+|.. ++.+.+.++++ .|+.||+.+.|.++-.++|+++.+|+++||+|.-|+..|..||.++.+..|..+
T Consensus 102 ~dvV~IDEaQFf~~~~v~~l~~la~-~gi~Vi~~GLd~DF~~~~F~~~~~Ll~~Ad~v~kl~aiC~~CG~~A~~~~R~~~ 180 (219)
T 3e2i_A 102 VDVIGIDEVQFFDDEIVSIVEKLSA-DGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLIN 180 (219)
T ss_dssp CSEEEECCGGGSCTHHHHHHHHHHH-TTCEEEEEEESBCTTSCBCTTHHHHHHHCSEEEEECEECTTTCSEECEEEEEET
T ss_pred CCEEEEechhcCCHHHHHHHHHHHH-CCCEEEEeecccccccCCCccHHHHHHhcceEEEeeeEccCCCCcceEEEEEEC
Confidence 9999999998876 58899999986 599999999999999999999999999999999999999999999999988766
Q ss_pred C------CcEEEeCCccceeeeccchhccCc
Q 023563 235 E------TKTELIGGSDIYMPVCRQHYVSGQ 259 (280)
Q Consensus 235 ~------~~~~~~~~~~~~~~~~~~~~~~~~ 259 (280)
+ ..+.++|+++.|.++||+||....
T Consensus 181 g~~~~~~g~~i~IGg~e~Y~~~CR~cy~~~~ 211 (219)
T 3e2i_A 181 GKPAKIDDPIILVGANESYEPRCRAHHIVAP 211 (219)
T ss_dssp TEECBTTCCSCCSSCCEEEEEECGGGCCCBC
T ss_pred CcccccCCCEEEECCCccEEEcCHHhhcCcc
Confidence 3 345667999999999999997654
No 58
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=99.88 E-value=2.9e-22 Score=176.04 Aligned_cols=178 Identities=45% Similarity=0.734 Sum_probs=139.3
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhcc
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYD 154 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~ 154 (280)
-..|.++.+.||+||||||.+++.+..+...|+++.++.+..+.|++ ..+..+.+....+.......++.+ .+.
T Consensus 16 ~~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~-----~~~ 89 (234)
T 2orv_A 16 KTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQ-----EAL 89 (234)
T ss_dssp --CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHH-----HHT
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHH-----Hhc
Confidence 34699999999999999999878888888889999888887777877 677776655444433333333333 236
Q ss_pred CCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeecC
Q 023563 155 QVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE 234 (280)
Q Consensus 155 ~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~~ 234 (280)
+.+++++||.++..++.++++.+.+ .|+.||+.++|.++-.++|+++.+|+++||.|.-|+..|..||.++....|..+
T Consensus 90 ~~dvViIDEaQF~~~v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~VtelkaIC~~Cg~~A~~t~R~~~ 168 (234)
T 2orv_A 90 GVAVIGIDEGQFFPDIVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGT 168 (234)
T ss_dssp TCSEEEESSGGGCTTHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECCEECTTTCSEECEEEESSC
T ss_pred cCCEEEEEchhhhhhHHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeeeeEecCcCCcceEEEEEcC
Confidence 7899999999887777777777776 499999999999999999999999999999999999988889999999999888
Q ss_pred CCcEEEeCCccceeeeccchhccCc
Q 023563 235 ETKTELIGGSDIYMPVCRQHYVSGQ 259 (280)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (280)
+..+.++|+.+.|.++||+||....
T Consensus 169 ~~~~i~IGg~e~Y~~~CR~c~~~~~ 193 (234)
T 2orv_A 169 EKEVEVIGGADKYHSVCRLCYFKKA 193 (234)
T ss_dssp CCSSCCCCCTTTEEEECHHHHHC--
T ss_pred CCCEEEECCCCcEEEccHHhhhccc
Confidence 7778889999999999999997544
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.87 E-value=2.9e-23 Score=208.31 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=60.5
Q ss_pred hhhhccCCC--EEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe-----
Q 023563 149 GSDAYDQVD--VIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL----- 215 (280)
Q Consensus 149 a~aL~~~p~--lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L----- 215 (280)
|+||+.+|+ +|||||||+.+ .++++|++++++ |.|||+||||++++. .||+|++|
T Consensus 214 ArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~-----------~~d~ii~l~~g~~ 281 (670)
T 3ux8_A 214 ATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-GNTLIVVEHDEDTML-----------AADYLIDIGPGAG 281 (670)
T ss_dssp HHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT-TCEEEEECCCHHHHH-----------HCSEEEEECSSSG
T ss_pred HHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHh-----------hCCEEEEeccccc
Confidence 678999988 99999997654 589999999876 999999999999765 79999999
Q ss_pred -ec-eeccccCcceee
Q 023563 216 -TA-RCEFCGKRAFFT 229 (280)
Q Consensus 216 -~~-~i~~~g~~~~~~ 229 (280)
++ ++++.|+++++.
T Consensus 282 ~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 282 IHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGCCSEEEEECHHHHH
T ss_pred ccCCEEEEecCHHHHh
Confidence 77 899999988775
No 60
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=99.87 E-value=2.3e-22 Score=174.99 Aligned_cols=178 Identities=35% Similarity=0.599 Sum_probs=133.1
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhc-
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAY- 153 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~- 153 (280)
-.+|.++.+.||+||||||.+++.+..+...|+++.++.+..+.+++...+..+.+...++.......++.+ .+
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~-----~~~ 99 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFK-----HIT 99 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGG-----GCC
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHH-----HHh
Confidence 356899999999999999999788888888899998888777766665555555544433333333332222 22
Q ss_pred cCCCEEEEeCcccH-HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeee
Q 023563 154 DQVDVIGIDEAQFF-EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRK 232 (280)
Q Consensus 154 ~~p~lLlLDEP~~~-~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~ 232 (280)
.+.+++++||.++. .++++.+..++++ |+.||+.++|.++-.++|+++.+|+++||.|.-|+..|..||.++....|.
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~aiC~~Cg~~A~~~~R~ 178 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQAVCSACGSPASRTQRL 178 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCCBCTTTSSBCCEEEEE
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccEEeeeeEecCcCCcceEEEEE
Confidence 25899999999886 3556889998876 999999999999999999999999999999999999888899999999888
Q ss_pred cCCCc------EEEeCCccceeeeccchhccC
Q 023563 233 TEETK------TELIGGSDIYMPVCRQHYVSG 258 (280)
Q Consensus 233 ~~~~~------~~~~~~~~~~~~~~~~~~~~~ 258 (280)
.++.. +.++|+++.|.++||+||...
T Consensus 179 ~~g~~a~~~g~~i~iGg~e~Y~~~CR~c~~~~ 210 (214)
T 2j9r_A 179 IDGEPAAFDDPIILVGASESYEPRCRHCHAVP 210 (214)
T ss_dssp ETTEECCTTSCSCCCCSTTTEEEECTTTCCCC
T ss_pred eCCCccccCCCEEEECCCCcEEEcchHhhcCc
Confidence 76554 567899999999999999643
No 61
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=99.87 E-value=4.3e-22 Score=170.90 Aligned_cols=178 Identities=34% Similarity=0.599 Sum_probs=132.2
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ 155 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~ 155 (280)
.+|.++.+.||+||||||.+++.+..+...|.++.++.+..+.+++...+..+.+...+.....+..++.+.. ..+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~----~~~ 81 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYF----EED 81 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHC----CTT
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHH----hcc
Confidence 5689999999999999999977777777889999888766666665545555554333333333333443321 125
Q ss_pred CCEEEEeCcccH-HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeecC
Q 023563 156 VDVIGIDEAQFF-EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKTE 234 (280)
Q Consensus 156 p~lLlLDEP~~~-~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~~ 234 (280)
.++|++||.++. .++++.++.++++ |+.||+.+++.++-.++|+++.+|+++||.|.-|+..|..||.++.+..|..+
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~~iC~~Cg~~a~~~~r~~~ 160 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQAICVVCGNPATRTQRLIN 160 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCEECTTTSSEECEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeeeeEccccCCcceEEEEEcC
Confidence 799999999776 4668889998886 99999999999999999999999999999999999988889999888888766
Q ss_pred CCc------EEEeCCccceeeeccchhccC
Q 023563 235 ETK------TELIGGSDIYMPVCRQHYVSG 258 (280)
Q Consensus 235 ~~~------~~~~~~~~~~~~~~~~~~~~~ 258 (280)
+.. +..+|+.+.|.++||+||..+
T Consensus 161 g~~~~~~~~~v~igg~~~Y~~~Cr~~~~~~ 190 (191)
T 1xx6_A 161 GKPAFYDDPVVLIGAMESYEARCRKCHVVP 190 (191)
T ss_dssp TEECCTTCCCC-----EEEEEECTTTCCCC
T ss_pred CCccccCCCEEEECCcCcEEEcchHhhcCC
Confidence 544 667899999999999999643
No 62
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.2e-22 Score=201.53 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=96.4
Q ss_pred cCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEE----------EecCCccc-----
Q 023563 56 RPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVA----------VIKSNKDT----- 118 (280)
Q Consensus 56 ~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~----------~~~~~~~~----- 118 (280)
+|++++|+.. ..|++++ ++++||++||+||||||||||+ ++|+|+.. ....+. ++......
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLL-kiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTAL-KILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHH-HHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHH-HHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 4688999764 4677777 6999999999999999999999 99999743 111111 00000000
Q ss_pred --ccccceee--eecc--------------------------cccccccccCchHHHHH--------------Hhhhhcc
Q 023563 119 --RYGLDSIV--THDG--------------------------VKLPCCALTTLSSFRQK--------------FGSDAYD 154 (280)
Q Consensus 119 --~~~~~~v~--~~~~--------------------------~~~~~~~~~~l~~~~~~--------------~a~aL~~ 154 (280)
...+..++ +... .....+...++..+.++ .|+||+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~ 238 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQ 238 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHS
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHh
Confidence 00000000 0000 00000111112111111 1678999
Q ss_pred CCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 155 QVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 155 ~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
+|++||||||++.+ .++++|++++++ |.|||+||||++++.+ +||+|++|.+
T Consensus 239 ~p~llllDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHdl~~~~~----------~~drv~vl~~ 296 (608)
T 3j16_B 239 EADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP-TKYVICVEHDLSVLDY----------LSDFVCIIYG 296 (608)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHGGGTT-TCEEEEECSCHHHHHH----------HCSEEEEEES
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH----------hCCEEEEEeC
Confidence 99999999997765 477888888776 9999999999999987 9999999976
No 63
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=99.85 E-value=5.5e-21 Score=167.74 Aligned_cols=182 Identities=35% Similarity=0.592 Sum_probs=138.1
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhh-cc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDA-YD 154 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL-~~ 154 (280)
.+|.++.+.||+|+||||++++.+..+...|.++.++.+..+.+ ....+..+.+...+........++++.....+ -.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~ 88 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFND 88 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCT
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCC
Confidence 46899999999999999999677777777888888876555444 43344444443333333333344444332222 13
Q ss_pred CCCEEEEeCcccH-HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceeeeeec
Q 023563 155 QVDVIGIDEAQFF-EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFTLRKT 233 (280)
Q Consensus 155 ~p~lLlLDEP~~~-~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~~~~~ 233 (280)
+++++++||.++. .++.+.+..+++. |+.||+++|+.++..++|+...+|+++||+|..|+..|..||.++....|..
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~-gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~~ic~~Cg~~a~~~~r~~ 167 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAEN-GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLTAICNECGAEATHSLRKI 167 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHT-TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECCEECTTTCSEECEEEEEE
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhC-CCeEEEEeccccccCCcCCCcHHHHHHhheEeecceeccccCCccceeEEec
Confidence 6999999999764 4677888888886 9999999999999999999999999999999999998888999998888876
Q ss_pred CCCc------EEEeCCccceeeeccchhccCc
Q 023563 234 EETK------TELIGGSDIYMPVCRQHYVSGQ 259 (280)
Q Consensus 234 ~~~~------~~~~~~~~~~~~~~~~~~~~~~ 259 (280)
++.. ..++|+.+.|.++||+||....
T Consensus 168 ~g~~~~~~~~~v~iGg~~~Y~~~Cr~c~~~~~ 199 (223)
T 2b8t_A 168 DGKHADYNDDIVKIGCQEFYSAVCRHHHKVPN 199 (223)
T ss_dssp TTEECCTTSCSCCCCSTTTEEEECGGGCCCTT
T ss_pred CCCccccCCCeEEECCcceEEeeChhhhcCcc
Confidence 5443 4557888999999999997543
No 64
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.84 E-value=1.9e-21 Score=195.08 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=60.4
Q ss_pred hhhhccCC---CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe----
Q 023563 149 GSDAYDQV---DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL---- 215 (280)
Q Consensus 149 a~aL~~~p---~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L---- 215 (280)
|+||+.+| ++|||||||+.+ .++++|++++++ |+|||+||||++++. .||+|++|
T Consensus 555 AraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~-g~tvi~vtHd~~~~~-----------~~d~i~~l~~~~ 622 (670)
T 3ux8_A 555 AAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDVIK-----------TADYIIDLGPEG 622 (670)
T ss_dssp HHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHT-----------TCSEEEEEESSS
T ss_pred HHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-----------hCCEEEEecCCc
Confidence 67898876 599999997654 588999999876 999999999999874 79999999
Q ss_pred --ec-eeccccCcceee
Q 023563 216 --TA-RCEFCGKRAFFT 229 (280)
Q Consensus 216 --~~-~i~~~g~~~~~~ 229 (280)
++ ++++.|+++++.
T Consensus 623 g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 623 GDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp GGGCCEEEEEECHHHHH
T ss_pred CCCCCEEEEecCHHHHH
Confidence 77 999999999886
No 65
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=99.84 E-value=3e-21 Score=164.37 Aligned_cols=176 Identities=34% Similarity=0.547 Sum_probs=131.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccCC
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQV 156 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p 156 (280)
+|.++.+.||+||||||++++++..+...|.++.++.+..+.+++...+..+.+.........+..++.+. +..++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~----~~~~~ 77 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKY----IEEDT 77 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGG----CCTTE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHH----hcCCC
Confidence 48899999999999999986777666667777777765555555443444433322222222223322221 11368
Q ss_pred CEEEEeCcccH-HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceecccc-CcceeeeeecC
Q 023563 157 DVIGIDEAQFF-EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCG-KRAFFTLRKTE 234 (280)
Q Consensus 157 ~lLlLDEP~~~-~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g-~~~~~~~~~~~ 234 (280)
++|++||.++. .++.+.++.++++ |..|++++++.++..+.|+....++++||.|.-|+..|..|| .++.+..|..+
T Consensus 78 dvviIDE~Q~~~~~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ic~~cg~~~a~~~~r~~~ 156 (184)
T 2orw_A 78 RGVFIDEVQFFNPSLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAG 156 (184)
T ss_dssp EEEEECCGGGSCTTHHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCBCCTTTCCSCBCEEEECSS
T ss_pred CEEEEECcccCCHHHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEeeeecCCCCCeeceeEEEEcC
Confidence 99999999776 5678888888887 999999999999999999999999999999999988777899 89999989887
Q ss_pred CCcEEEeCCccceeeeccchhcc
Q 023563 235 ETKTELIGGSDIYMPVCRQHYVS 257 (280)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~ 257 (280)
+....++|+++.|.++||+||..
T Consensus 157 ~~~~~~ig~~~~Y~~~cr~~~~~ 179 (184)
T 2orw_A 157 GEEEIDVGGQEKYIAVCRDCYNT 179 (184)
T ss_dssp CSCSCCCCSTTTEEEECHHHHHH
T ss_pred CCCEEEECCCCcEEEccHHHHhh
Confidence 77777889999999999999954
No 66
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.83 E-value=4.6e-21 Score=187.96 Aligned_cols=57 Identities=23% Similarity=0.215 Sum_probs=50.4
Q ss_pred hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
|+||+.+|++|||||||+.+ .++++|+++++ |+|||+||||++++.. +||+|++|++
T Consensus 150 A~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~--g~tii~vsHdl~~~~~----------~~d~i~vl~~ 212 (538)
T 3ozx_A 150 AASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVVDHDLIVLDY----------LTDLIHIIYG 212 (538)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT--TSEEEEECSCHHHHHH----------HCSEEEEEEE
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC--CCEEEEEEeChHHHHh----------hCCEEEEecC
Confidence 67899999999999997754 47788888853 8999999999999986 9999999987
No 67
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.81 E-value=9.6e-22 Score=169.32 Aligned_cols=140 Identities=13% Similarity=0.061 Sum_probs=81.6
Q ss_pred eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---CeeEEEecCCcccccccceeeeeccc----------
Q 023563 65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---GRNVAVIKSNKDTRYGLDSIVTHDGV---------- 131 (280)
Q Consensus 65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---g~~i~~~~~~~~~~~~~~~v~~~~~~---------- 131 (280)
..+++| .+|++|++++|+||||||||||+ ++|.|+... ...+....+....+.+++++++....
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl-~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l 85 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVV-RCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGEL 85 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHH-HHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHH-HHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCc
Confidence 456777 79999999999999999999999 999997420 00110001111112233344331100
Q ss_pred -----------cc------------cc------ccccCchHHHHHHhh---hhccCCCEEEEeCccc----------HHH
Q 023563 132 -----------KL------------PC------CALTTLSSFRQKFGS---DAYDQVDVIGIDEAQF----------FED 169 (280)
Q Consensus 132 -----------~~------------~~------~~~~~l~~~~~~~a~---aL~~~p~lLlLDEP~~----------~~~ 169 (280)
.. .. +...++..+.+++.. +|+.+|++++||||+. +..
T Consensus 86 ~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~ 165 (207)
T 1znw_A 86 LEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRR 165 (207)
T ss_dssp EEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHH
T ss_pred eeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHH
Confidence 00 00 111222333333333 6788999999999954 345
Q ss_pred HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 170 LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 170 i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
++++++++.++.|.|+|++|||++++.+ +||+|++|..
T Consensus 166 l~~~l~~l~~~~g~tvi~vtHdl~~~~~----------~~d~i~~l~~ 203 (207)
T 1znw_A 166 LDTARIELAAQGDFDKVVVNRRLESACA----------ELVSLLVGTA 203 (207)
T ss_dssp HHHHHHHHHGGGGSSEEEECSSHHHHHH----------HHHHHHC---
T ss_pred HHHHHHHHhhhccCcEEEECCCHHHHHH----------HHHHHHHhcc
Confidence 8888888876569999999999999987 9999998853
No 68
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.9e-22 Score=193.05 Aligned_cols=158 Identities=13% Similarity=0.037 Sum_probs=107.3
Q ss_pred CccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CC-eeEEEecCCcccccccceee
Q 023563 50 HSMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KG-RNVAVIKSNKDTRYGLDSIV 126 (280)
Q Consensus 50 ~~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g-~~i~~~~~~~~~~~~~~~v~ 126 (280)
.+|++++||+++|+ ++||++++|++++|+||||||||||+ ++|+|+.. .| ..+.+-. +. +..+.+++
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLl-r~L~Gl~~p~~G~~pI~vdg-~~--~~~i~~vp 185 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLS-RTLCSYALKFNAYQPLYINL-DP--QQPIFTVP 185 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHH-HHHHHTTHHHHCCCCEEEEC-CT--TSCSSSCS
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHH-HHHhCcccccCCceeEEEcC-Cc--cCCeeeec
Confidence 56899999999996 79999999999999999999999999 99999843 33 2132221 10 11111111
Q ss_pred eec---------------------------ccccccccccCchHH----------HHHH--hhh--hccCCCE----EEE
Q 023563 127 THD---------------------------GVKLPCCALTTLSSF----------RQKF--GSD--AYDQVDV----IGI 161 (280)
Q Consensus 127 ~~~---------------------------~~~~~~~~~~~l~~~----------~~~~--a~a--L~~~p~l----LlL 161 (280)
|.. ....+.+...++..+ .++. |++ |+.+|++ |||
T Consensus 186 q~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 186 GCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp SCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred cchhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 100 001111222222221 1122 567 9999999 999
Q ss_pred eC-cccHHHH-HHHHHHHHhhcCCEEEEEEechh------HhhhccCCccccccccce-----EEEee-c-eeccccCcc
Q 023563 162 DE-AQFFEDL-YDFCREAADHDGKTVIVAGLDGD------YLRRSFGSVIDIIPLADS-----VTKLT-A-RCEFCGKRA 226 (280)
Q Consensus 162 DE-P~~~~~i-~~~l~~l~~~~g~tviivtHdl~------~~~~~~~~~~~ll~~aD~-----i~~L~-~-~i~~~g~~~ 226 (280)
|| |++.+|. .+.|.++.++.++|+|+||||.+ ++.+ +||+ |++|+ + +++ .|+++
T Consensus 266 DEpPts~LD~~~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~----------~~dr~~~~~vi~l~k~G~iv-~g~~~ 334 (460)
T 2npi_A 266 DTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKT----------FGPELGNNNIFFIPKLDGVS-AVDDV 334 (460)
T ss_dssp ECCCGGGSCSSCHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHH----------HHHHHCGGGEEEECCCTTCC-CCCHH
T ss_pred eCCcccccChhHHHHHHHHHHhCCCEEEEEccCchhhhHHHHHH----------hcccccCCEEEEEeCCCcEE-ECCHH
Confidence 99 8876432 45556665556899999999987 6665 9999 99998 7 887 88876
Q ss_pred ee
Q 023563 227 FF 228 (280)
Q Consensus 227 ~~ 228 (280)
++
T Consensus 335 ~~ 336 (460)
T 2npi_A 335 YK 336 (460)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.81 E-value=2.6e-20 Score=156.04 Aligned_cols=125 Identities=9% Similarity=0.045 Sum_probs=72.2
Q ss_pred eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCee--EEEecCCcccccccceeee----------ecccccccc
Q 023563 70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRN--VAVIKSNKDTRYGLDSIVT----------HDGVKLPCC 136 (280)
Q Consensus 70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~--i~~~~~~~~~~~~~~~v~~----------~~~~~~~~~ 136 (280)
||||+|++||+++|+||||||||||+ +++.+- .....+ .+++.|+............ ..+.. ...
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~-~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~ 78 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFA-KKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKL-TVV 78 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHH-HHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCC-EEE
T ss_pred CccccCCCCEEEEEECCCCCCHHHHH-HHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCe-EEE
Confidence 68999999999999999999999999 743321 000000 0111222110000000000 00000 000
Q ss_pred ccc--CchHHHH--HHhhhhccCCCEEEEeCcccHHH----------------------HHHHHHHHHhhcCCEEEEEEe
Q 023563 137 ALT--TLSSFRQ--KFGSDAYDQVDVIGIDEAQFFED----------------------LYDFCREAADHDGKTVIVAGL 190 (280)
Q Consensus 137 ~~~--~l~~~~~--~~a~aL~~~p~lLlLDEP~~~~~----------------------i~~~l~~l~~~~g~tviivtH 190 (280)
... ......+ ..|++++.+|++|+||||++..+ +++.|++++++ |.|+|++||
T Consensus 79 ~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH 157 (171)
T 4gp7_A 79 DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILN 157 (171)
T ss_dssp ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEEC
T ss_pred ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeC
Confidence 000 1111122 23789999999999999965543 45566667776 999999999
Q ss_pred chhHhhh
Q 023563 191 DGDYLRR 197 (280)
Q Consensus 191 dl~~~~~ 197 (280)
|++++.+
T Consensus 158 ~~~~~~~ 164 (171)
T 4gp7_A 158 SPEEVEE 164 (171)
T ss_dssp SHHHHHH
T ss_pred CHHHhhh
Confidence 9998864
No 70
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.80 E-value=2.6e-20 Score=190.26 Aligned_cols=69 Identities=20% Similarity=0.099 Sum_probs=59.8
Q ss_pred hhhhccC---CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe----
Q 023563 149 GSDAYDQ---VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL---- 215 (280)
Q Consensus 149 a~aL~~~---p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L---- 215 (280)
|++|+.+ |++|||||||+.+ .++++|++++++ |.|||++|||++++ + +||+|++|
T Consensus 742 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~tVIvisHdl~~i-~----------~aDrii~L~p~~ 809 (842)
T 2vf7_A 742 ATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIAVEHKMQVV-A----------ASDWVLDIGPGA 809 (842)
T ss_dssp HHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHH-T----------TCSEEEEECSSS
T ss_pred HHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHH-H----------hCCEEEEECCCC
Confidence 5678886 7999999997754 488889999876 99999999999998 4 89999999
Q ss_pred --ec-eeccccCcceee
Q 023563 216 --TA-RCEFCGKRAFFT 229 (280)
Q Consensus 216 --~~-~i~~~g~~~~~~ 229 (280)
++ ++++.|+++++.
T Consensus 810 g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 810 GEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp GGGCCSEEEEECHHHHT
T ss_pred CCCCCEEEEEcCHHHHH
Confidence 56 899999998886
No 71
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.79 E-value=7.3e-20 Score=190.76 Aligned_cols=163 Identities=10% Similarity=0.023 Sum_probs=101.1
Q ss_pred CccEEEcC-----ceEEe-CCeeeeEeeeeEeeC-------ceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEE-EecCC
Q 023563 50 HSMVSPRP-----PLFSL-QNRNLHSEASVSSPS-------GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVA-VIKSN 115 (280)
Q Consensus 50 ~~~l~~~~-----ls~~y-~~~~vl~~isl~i~~-------Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~-~~~~~ 115 (280)
.++|+++| |++.| ++..+++|++|++++ |++++|+||||||||||| +.+ |+...-..++ ++++.
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlL-r~i-Gl~~~~aqiG~~Vpq~ 825 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLM-RQA-GLLAVMAQMGCYVPAE 825 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHH-HHH-HHHHHHHTTTCCEESS
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHH-HHH-HHHHHHhheeEEeccC
Confidence 35799999 99999 778899999999987 999999999999999999 988 7643212223 55554
Q ss_pred ccccccc-ceeeeecccccccccccCchHHHH-----HHhhhhccCCCEEEEeCcccH---H----HHHHHHHHHHhhcC
Q 023563 116 KDTRYGL-DSIVTHDGVKLPCCALTTLSSFRQ-----KFGSDAYDQVDVIGIDEAQFF---E----DLYDFCREAADHDG 182 (280)
Q Consensus 116 ~~~~~~~-~~v~~~~~~~~~~~~~~~l~~~~~-----~~a~aL~~~p~lLlLDEP~~~---~----~i~~~l~~l~~~~g 182 (280)
.. ..++ ..++.+.+... .. ..+...+.. ..+++++.+|++||||||+.+ . .++++++.++++.|
T Consensus 826 ~~-~l~v~d~I~~rig~~d-~~-~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g 902 (1022)
T 2o8b_B 826 VC-RLTPIDRVFTRLGASD-RI-MSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIK 902 (1022)
T ss_dssp EE-EECCCSBEEEECC-----------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSC
T ss_pred cC-CCCHHHHHHHHcCCHH-HH-hhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCC
Confidence 32 1111 12222211100 00 011111111 125678899999999999433 1 25778888876559
Q ss_pred CEEEEEEechhHhhhccCCccccccccceEEEeeceec--cccCcce
Q 023563 183 KTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCE--FCGKRAF 227 (280)
Q Consensus 183 ~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~--~~g~~~~ 227 (280)
.++|++||+++++.. +||++.+++.++. ..|.+++
T Consensus 903 ~~vl~~TH~~el~~~----------~~d~~~v~~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 903 CRTLFSTHYHSLVED----------YSQNVAVRLGHMACMVENECED 939 (1022)
T ss_dssp CEEEEECCCHHHHHH----------TSSCSSEEEEEEEEC-------
T ss_pred CEEEEEeCCHHHHHH----------hCCcceeecCeEEEEEecCccc
Confidence 999999999999986 8999988866444 5565544
No 72
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.77 E-value=2e-19 Score=157.14 Aligned_cols=160 Identities=13% Similarity=0.043 Sum_probs=89.5
Q ss_pred cEEEcCceEEeCCe-eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHh--cchhCCeeEEEecCCccc------cccc
Q 023563 52 MVSPRPPLFSLQNR-NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ--AETQKGRNVAVIKSNKDT------RYGL 122 (280)
Q Consensus 52 ~l~~~~ls~~y~~~-~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~--gl~~~g~~i~~~~~~~~~------~~~~ 122 (280)
++++++++..+.+. .++.+ .|++|++++|+||||||||||+ ++++ |+...+....++...... ...+
T Consensus 6 ~~~~~~i~tg~~~lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFDELIEG---GFPEGTTVLLTGGTGTGKTTFA-AQFIYKGAEEYGEPGVFVTLEERARDLRREMASF 81 (251)
T ss_dssp --CCCEECCSCTTTGGGTTT---SEETTCEEEEECCTTSSHHHHH-HHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTT
T ss_pred ccccceeecCCHhHHHHhcC---CCCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHc
Confidence 46667776666442 22222 6999999999999999999999 8888 552333333343322111 1112
Q ss_pred ceeeeec----cc-ccc---------------cccccCchHHHHHHhhh-hccCCCEEEEeCcccHHH-----------H
Q 023563 123 DSIVTHD----GV-KLP---------------CCALTTLSSFRQKFGSD-AYDQVDVIGIDEAQFFED-----------L 170 (280)
Q Consensus 123 ~~v~~~~----~~-~~~---------------~~~~~~l~~~~~~~a~a-L~~~p~lLlLDEP~~~~~-----------i 170 (280)
+..++.. .. ... .....++..+.++.... -..+|++|++|||++..+ +
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l 161 (251)
T 2ehv_A 82 GWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVL 161 (251)
T ss_dssp TCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHH
T ss_pred CCChHHHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHH
Confidence 2222110 00 000 01112233333333222 247999999999976553 7
Q ss_pred HHHHHHHHhhcCCEEEEEEechhHhhhccCCcccccccc-ceEEEeec
Q 023563 171 YDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLA-DSVTKLTA 217 (280)
Q Consensus 171 ~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~a-D~i~~L~~ 217 (280)
.++++.++++ |+|||++||+++++...+. -..+..+| |+|++|+.
T Consensus 162 ~~l~~~l~~~-g~tii~vtH~~~~~~~~~~-~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 162 LKLNTILLEM-GVTTILTTEAPDPQHGKLS-RYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHHHHHHHH-CCEEEEEECCC----CCSS-SSSCGGGGCSEEEEEEE
T ss_pred HHHHHHHHHC-CCeEEEEECCCCCCccccc-ccChhhEeeeEEEEEee
Confidence 7788888765 9999999999998720000 01112378 99999986
No 73
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.77 E-value=1.3e-18 Score=179.13 Aligned_cols=69 Identities=22% Similarity=0.209 Sum_probs=60.2
Q ss_pred hhhhccCC---CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe----
Q 023563 149 GSDAYDQV---DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL---- 215 (280)
Q Consensus 149 a~aL~~~p---~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L---- 215 (280)
|++|+.+| ++|||||||+.+ .+++.|++++++ |.|||+||||++++. .||+|++|
T Consensus 817 AraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G~TVIvI~HdL~~i~-----------~ADrIivLgp~g 884 (916)
T 3pih_A 817 ASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GNTVIVIEHNLDVIK-----------NADHIIDLGPEG 884 (916)
T ss_dssp HHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHT-----------TCSEEEEEESSS
T ss_pred HHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-----------hCCEEEEecCCC
Confidence 66788765 799999998764 478889999876 999999999999885 69999999
Q ss_pred --ec-eeccccCcceee
Q 023563 216 --TA-RCEFCGKRAFFT 229 (280)
Q Consensus 216 --~~-~i~~~g~~~~~~ 229 (280)
++ ++++.|+++++.
T Consensus 885 g~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 885 GKEGGYIVATGTPEEIA 901 (916)
T ss_dssp GGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEEcCHHHHH
Confidence 77 999999999987
No 74
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.77 E-value=1.2e-19 Score=187.06 Aligned_cols=69 Identities=22% Similarity=0.186 Sum_probs=59.1
Q ss_pred hhhhccC---CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe----
Q 023563 149 GSDAYDQ---VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL---- 215 (280)
Q Consensus 149 a~aL~~~---p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L---- 215 (280)
|++|+.+ |++|||||||+.+ .++++|++++++ |.|||++|||++++. .||+|++|
T Consensus 875 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~TVIvisHdl~~i~-----------~aDrIivL~p~g 942 (993)
T 2ygr_A 875 ASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK-GNTVIVIEHNLDVIK-----------TSDWIIDLGPEG 942 (993)
T ss_dssp HHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHT-----------TCSEEEEEESSS
T ss_pred HHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHH-----------hCCEEEEECCCc
Confidence 5678876 4999999997754 478888888875 999999999999874 79999999
Q ss_pred --ec-eeccccCcceee
Q 023563 216 --TA-RCEFCGKRAFFT 229 (280)
Q Consensus 216 --~~-~i~~~g~~~~~~ 229 (280)
++ ++++.|+++++.
T Consensus 943 g~~~G~Iv~~G~~~el~ 959 (993)
T 2ygr_A 943 GAGGGTVVAQGTPEDVA 959 (993)
T ss_dssp TTSCSEEEEEECHHHHH
T ss_pred CCCCCEEEEecCHHHHH
Confidence 56 899999999886
No 75
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.77 E-value=1.9e-19 Score=185.04 Aligned_cols=69 Identities=20% Similarity=0.211 Sum_probs=59.2
Q ss_pred hhhhccC---CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe----
Q 023563 149 GSDAYDQ---VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL---- 215 (280)
Q Consensus 149 a~aL~~~---p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L---- 215 (280)
|++|+.+ |++|||||||+.+ .++++|++++++ |.|||++|||++++. +||+|++|
T Consensus 857 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~TVIvisHdl~~i~-----------~aDrIivL~p~g 924 (972)
T 2r6f_A 857 AAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDVIK-----------TADYIIDLGPEG 924 (972)
T ss_dssp HHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHT-----------TCSEEEEECSSS
T ss_pred HHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHH-----------hCCEEEEEcCCC
Confidence 5678876 4999999997654 488889998875 999999999999874 79999999
Q ss_pred --ec-eeccccCcceee
Q 023563 216 --TA-RCEFCGKRAFFT 229 (280)
Q Consensus 216 --~~-~i~~~g~~~~~~ 229 (280)
++ ++++.|+++++.
T Consensus 925 G~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 925 GDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TTSCCSEEEEESHHHHH
T ss_pred CCCCCEEEEecCHHHHH
Confidence 56 899999999886
No 76
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.76 E-value=4.4e-19 Score=173.21 Aligned_cols=172 Identities=12% Similarity=0.008 Sum_probs=111.9
Q ss_pred ccEEEcCceEEeCCeeeeEeeee-EeeCceEEEEEcCCCCcHHHHHHHH--Hhcchh-CCeeEEEecCCcc-----cccc
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASV-SSPSGEIHVIVGPMFAGKTTTLLRR--IQAETQ-KGRNVAVIKSNKD-----TRYG 121 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl-~i~~Gei~~liGpNGsGKSTLl~~~--l~gl~~-~g~~i~~~~~~~~-----~~~~ 121 (280)
++++.+++.+..++..+|++||| .|++|++++|+||||||||||+ ++ +.|+.. ....+.+...... ....
T Consensus 11 ~~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~-~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~ 89 (525)
T 1tf7_A 11 NNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFS-IQFLYNGIIEFDEPGVFVTFEETPQDIIKNARS 89 (525)
T ss_dssp ---CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHH-HHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGG
T ss_pred CCccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHH-HHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHH
Confidence 35777888777778889999999 9999999999999999999999 77 678765 3344433332211 1122
Q ss_pred cceeeeecc----cc----------cccccccCchHHHHHHhhhhc-cCCCEEEEeCccc-----------HHHHHHHHH
Q 023563 122 LDSIVTHDG----VK----------LPCCALTTLSSFRQKFGSDAY-DQVDVIGIDEAQF-----------FEDLYDFCR 175 (280)
Q Consensus 122 ~~~v~~~~~----~~----------~~~~~~~~l~~~~~~~a~aL~-~~p~lLlLDEP~~-----------~~~i~~~l~ 175 (280)
+++++|... .. ...+...++..+..+...+|. .+|++|++|||++ +..++++++
T Consensus 90 ~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~ 169 (525)
T 1tf7_A 90 FGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVA 169 (525)
T ss_dssp GTCCHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHH
T ss_pred cCCChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHH
Confidence 333333211 00 011122345556666666664 7999999999954 235888999
Q ss_pred HHHhhcCCEEEEEEechhHhhhccCCcccc-ccccceEEEeec-eeccccCccee
Q 023563 176 EAADHDGKTVIVAGLDGDYLRRSFGSVIDI-IPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 176 ~l~~~~g~tviivtHdl~~~~~~~~~~~~l-l~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
++++. |+|||++||+++++.. .....+ ..+||+|++|++ +. .|.....
T Consensus 170 ~l~~~-g~tvl~itH~~~~~~~--~~~~~i~~~laD~vi~L~~~~~--~G~~~r~ 219 (525)
T 1tf7_A 170 RLKQI-GATTVMTTERIEEYGP--IARYGVEEFVSDNVVILRNVLE--GERRRRT 219 (525)
T ss_dssp HHHHH-TCEEEEEEECSSSSSC--SSTTSCHHHHCSEEEEEEEECS--TTCCEEE
T ss_pred HHHHC-CCEEEEEecCCCCccc--cccccceeeeeeEEEEEEEEcc--CCceeEE
Confidence 98875 9999999999997510 000000 025999999998 53 3655433
No 77
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.76 E-value=4.2e-20 Score=160.37 Aligned_cols=129 Identities=12% Similarity=0.097 Sum_probs=77.8
Q ss_pred EEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEE--e-cCCcccccccceeeeec--cc-cc
Q 023563 60 FSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAV--I-KSNKDTRYGLDSIVTHD--GV-KL 133 (280)
Q Consensus 60 ~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~--~-~~~~~~~~~~~~v~~~~--~~-~~ 133 (280)
++|+++.+|+|| ++|++++|+||||||||||+ ++|+|+......+.. + .+....+..+++++|.. +. ..
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl-~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~ 82 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLA-MAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPY 82 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHH-HHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC------CTT
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHH-HHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHH
Confidence 456777889985 89999999999999999999 999998222211111 1 11112233455555532 11 01
Q ss_pred c-----cc----cccCchHHHHH---------HhhhhccCCCEEEEeCcccH--HHHHHHHHHHHhhcCCEEEEEEechh
Q 023563 134 P-----CC----ALTTLSSFRQK---------FGSDAYDQVDVIGIDEAQFF--EDLYDFCREAADHDGKTVIVAGLDGD 193 (280)
Q Consensus 134 ~-----~~----~~~~l~~~~~~---------~a~aL~~~p~lLlLDEP~~~--~~i~~~l~~l~~~~g~tviivtHdl~ 193 (280)
. .. ....+..+.++ .|++|+.+|++||||||++. ..++++|+++ ++ |+||| +|||++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~~~~~l~~~l~~l-~~-g~tii-vtHd~~ 159 (208)
T 3b85_A 83 LRPLHDALRDMVEPEVIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLTRL-GF-GSKMV-VTGDIT 159 (208)
T ss_dssp THHHHHHHTTTSCTTHHHHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGCCHHHHHHHHTTB-CT-TCEEE-EEEC--
T ss_pred HHHHHHHHHHhccHHHHHHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccccHHHHHHHHHHh-cC-CCEEE-EECCHH
Confidence 0 00 00011222221 26789999999999999754 4577777777 44 89999 999998
Q ss_pred Hhh
Q 023563 194 YLR 196 (280)
Q Consensus 194 ~~~ 196 (280)
++.
T Consensus 160 ~~~ 162 (208)
T 3b85_A 160 QVD 162 (208)
T ss_dssp ---
T ss_pred HHh
Confidence 664
No 78
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.74 E-value=1.6e-19 Score=166.91 Aligned_cols=137 Identities=14% Similarity=0.062 Sum_probs=95.7
Q ss_pred EcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-CeeEEEecCCcccccc-cceeeeecccc
Q 023563 55 PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-GRNVAVIKSNKDTRYG-LDSIVTHDGVK 132 (280)
Q Consensus 55 ~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g~~i~~~~~~~~~~~~-~~~v~~~~~~~ 132 (280)
++++++ | ..+++++||+|++|++++|+||||||||||+ ++|.|+... ...+.+-... ..... ....+ ...
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll-~~l~g~~~~~~g~i~i~~~~-e~~~~~~~~~i---~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYI-KSIMEFIPKEERIISIEDTE-EIVFKHHKNYT---QLF 222 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHH-HHGGGGSCTTSCEEEEESSC-CCCCSSCSSEE---EEE
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHH-HHHhCCCcCCCcEEEECCee-ccccccchhEE---EEE
Confidence 566666 6 4589999999999999999999999999999 999998543 3344333221 11100 00000 000
Q ss_pred cccccccCchHHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceE
Q 023563 133 LPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSV 212 (280)
Q Consensus 133 ~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i 212 (280)
.. +-.......+++|..+|++||+|||+.. ++++.|+.+... +.|+|+++|+.+ +.+ .|||+
T Consensus 223 ~g-----gg~~~r~~la~aL~~~p~ilildE~~~~-e~~~~l~~~~~g-~~tvi~t~H~~~-~~~----------~~dri 284 (330)
T 2pt7_A 223 FG-----GNITSADCLKSCLRMRPDRIILGELRSS-EAYDFYNVLCSG-HKGTLTTLHAGS-SEE----------AFIRL 284 (330)
T ss_dssp CB-----TTBCHHHHHHHHTTSCCSEEEECCCCST-HHHHHHHHHHTT-CCCEEEEEECSS-HHH----------HHHHH
T ss_pred eC-----CChhHHHHHHHHhhhCCCEEEEcCCChH-HHHHHHHHHhcC-CCEEEEEEcccH-HHH----------Hhhhh
Confidence 00 2223444557899999999999999884 567788777642 458999999999 443 89999
Q ss_pred EEeec
Q 023563 213 TKLTA 217 (280)
Q Consensus 213 ~~L~~ 217 (280)
++|.+
T Consensus 285 ~~l~~ 289 (330)
T 2pt7_A 285 ANMSS 289 (330)
T ss_dssp HHHHH
T ss_pred eehhc
Confidence 99987
No 79
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.74 E-value=5.9e-19 Score=166.39 Aligned_cols=54 Identities=13% Similarity=-0.015 Sum_probs=46.6
Q ss_pred hhhhccCC--CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe
Q 023563 149 GSDAYDQV--DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL 215 (280)
Q Consensus 149 a~aL~~~p--~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L 215 (280)
|++|+.+| ++||||||++.+ .+.+.|+++. + |.+||+||||++++. +||++++|
T Consensus 307 A~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~~~~~-----------~~d~i~~l 368 (415)
T 4aby_A 307 AVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQIAA-----------RAHHHYKV 368 (415)
T ss_dssp HHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCHHHHT-----------TCSEEEEE
T ss_pred HHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHh-----------hcCeEEEE
Confidence 67788999 999999997654 4788888887 4 899999999998764 79999999
No 80
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.73 E-value=3.8e-18 Score=176.21 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=100.4
Q ss_pred cEEEcCceEEe-----CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceee
Q 023563 52 MVSPRPPLFSL-----QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIV 126 (280)
Q Consensus 52 ~l~~~~ls~~y-----~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~ 126 (280)
.|.+++..+-+ ++..+++|+||++++|++++|+||||||||||| ++++++.+..+.-.+++........+..++
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlL-r~ial~~~~aq~G~~vpa~~~~~~~~d~i~ 709 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYI-RQTGVIVLMAQIGCFVPCESAEVSIVDCIL 709 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHH-HHHHHHHHHHHHTCCBSEEEEEEECCSEEE
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHH
Confidence 35555444333 345789999999999999999999999999999 888433110000001111100000111222
Q ss_pred eecccccccccccCchHHH---HHHhhhh--ccCCCEEEEeCcccHH------HH-HHHHHHHHhhcCCEEEEEEechhH
Q 023563 127 THDGVKLPCCALTTLSSFR---QKFGSDA--YDQVDVIGIDEAQFFE------DL-YDFCREAADHDGKTVIVAGLDGDY 194 (280)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~---~~~a~aL--~~~p~lLlLDEP~~~~------~i-~~~l~~l~~~~g~tviivtHdl~~ 194 (280)
.+.+.... ...+++.+. .+.++++ +.+|++||||||+.+. .+ +.+++.+.++.|.++|++||+.+.
T Consensus 710 ~~ig~~d~--l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el 787 (934)
T 3thx_A 710 ARVGAGDS--QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHEL 787 (934)
T ss_dssp EECC-----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGG
T ss_pred HhcCchhh--HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHH
Confidence 22111100 011222221 2224445 7899999999995432 34 566777776559999999999876
Q ss_pred hhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 195 LRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 195 ~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+. +||++..+.+ ++.+.++++++.
T Consensus 788 ~~-----------lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 788 TA-----------LANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp GG-----------GGGTCTTEEEEEEEEEEETTEEE
T ss_pred HH-----------HhcccceeEeeEEEEEecCCcEE
Confidence 64 8999999999 888888888775
No 81
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.71 E-value=3.4e-18 Score=153.18 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=93.5
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-C-CeeEEEecCCccc--ccccceeee
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-K-GRNVAVIKSNKDT--RYGLDSIVT 127 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~-g~~i~~~~~~~~~--~~~~~~v~~ 127 (280)
+++++++++. .+|+++| +++|++++|+||||||||||+ ++|.|+.. . ...+.+....... +.....+.+
T Consensus 5 ~~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll-~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q 77 (261)
T 2eyu_A 5 IPEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTI-ASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQ 77 (261)
T ss_dssp -CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHH-HHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEE
T ss_pred CCChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHH-HHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeH
Confidence 4677888753 5899999 999999999999999999999 99999743 2 4555544332211 111111111
Q ss_pred ecccccccccccCchHHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCcccccc
Q 023563 128 HDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIP 207 (280)
Q Consensus 128 ~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~ 207 (280)
. . ... +...+....+++|..+|++||+|||+-...+...++. +.. |.+|++++|+.+.. .
T Consensus 78 ~-~-----~gl-~~~~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~-~~~-g~~vl~t~H~~~~~-~---------- 137 (261)
T 2eyu_A 78 R-E-----VGE-DTKSFADALRAALREDPDVIFVGEMRDLETVETALRA-AET-GHLVFGTLHTNTAI-D---------- 137 (261)
T ss_dssp E-E-----BTT-TBSCHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHH-HHT-TCEEEEEECCSSHH-H----------
T ss_pred H-H-----hCC-CHHHHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHH-Hcc-CCEEEEEeCcchHH-H----------
Confidence 1 0 000 1123455567889999999999999855445555554 344 99999999998844 3
Q ss_pred ccceEEEeec
Q 023563 208 LADSVTKLTA 217 (280)
Q Consensus 208 ~aD~i~~L~~ 217 (280)
.||+++.|..
T Consensus 138 ~~dri~~l~~ 147 (261)
T 2eyu_A 138 TIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHhhhcC
Confidence 7888877753
No 82
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.69 E-value=3.7e-17 Score=152.94 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=47.3
Q ss_pred cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eecc
Q 023563 154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEF 221 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~ 221 (280)
.+|++||||||++.+ .++++|+++.++ |.|||+||||++++. .||++++|++ ++++
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~-g~tvi~itH~~~~~~-----------~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERL-NKVIVFITHDREFSE-----------AFDRKLRITGGVVVN 364 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGS-SSEEEEEESCHHHHT-----------TCSCEEEEETTEEC-
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEecchHHHH-----------hCCEEEEEECCEEEe
Confidence 699999999997654 478888888765 999999999999853 7999999998 7753
No 83
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.69 E-value=2.9e-17 Score=148.35 Aligned_cols=153 Identities=16% Similarity=0.121 Sum_probs=91.7
Q ss_pred eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-C-CeeEEEecCCccc---ccccceeeeec-----------
Q 023563 66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-K-GRNVAVIKSNKDT---RYGLDSIVTHD----------- 129 (280)
Q Consensus 66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~-g~~i~~~~~~~~~---~~~~~~v~~~~----------- 129 (280)
.+|+++++.|++|++++|+||||||||||+ +.|++... . |..+.++...... ...+..+.+..
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~-~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~ 101 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFV-RQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKRE 101 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHH-HHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHH-HHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccC
Confidence 579999999999999999999999999999 88888643 3 5567666543211 00000000000
Q ss_pred ------------------ccccccc-cccCchHHHHHH-hhhhccCCCEEEEeCccc---H-------H---HHHHHHHH
Q 023563 130 ------------------GVKLPCC-ALTTLSSFRQKF-GSDAYDQVDVIGIDEAQF---F-------E---DLYDFCRE 176 (280)
Q Consensus 130 ------------------~~~~~~~-~~~~l~~~~~~~-a~aL~~~p~lLlLDEP~~---~-------~---~i~~~l~~ 176 (280)
....... .......+..+. ++++..+|++||+|||++ . . .+++.|++
T Consensus 102 ~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~ 181 (296)
T 1cr0_A 102 IIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKG 181 (296)
T ss_dssp HHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHH
Confidence 0000000 001223333332 445788999999999976 2 1 36777888
Q ss_pred HHhhcCCEEEEEEech--hHhh----------hccCCccccccccceEEEeec-ee
Q 023563 177 AADHDGKTVIVAGLDG--DYLR----------RSFGSVIDIIPLADSVTKLTA-RC 219 (280)
Q Consensus 177 l~~~~g~tviivtHdl--~~~~----------~~~~~~~~ll~~aD~i~~L~~-~i 219 (280)
++++.|+|||++||+. +.-. .-+.+...+..+||+|++|.. +.
T Consensus 182 la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 182 FAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 8877799999999995 4100 000011123348999999988 53
No 84
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.68 E-value=1.1e-16 Score=137.87 Aligned_cols=133 Identities=14% Similarity=0.051 Sum_probs=77.4
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-------CeeEEEecCCcc-cccccceeeeecccccc----ccc---c
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-------GRNVAVIKSNKD-TRYGLDSIVTHDGVKLP----CCA---L 138 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-------g~~i~~~~~~~~-~~~~~~~v~~~~~~~~~----~~~---~ 138 (280)
-|++|++++|+||||||||||+ +.|+|.... +..+.++..... ....+..+++....... .+. .
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll-~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 99 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 99 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEEC
T ss_pred CCCCCcEEEEECCCCCCHHHHH-HHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEec
Confidence 5899999999999999999999 989884221 333444433321 11112222222111100 000 0
Q ss_pred cCchHH---HHH----Hhhhh--ccCCCEEEEeCcccH------------------HHHHHHHHHHHhhcCCEEEEEEec
Q 023563 139 TTLSSF---RQK----FGSDA--YDQVDVIGIDEAQFF------------------EDLYDFCREAADHDGKTVIVAGLD 191 (280)
Q Consensus 139 ~~l~~~---~~~----~a~aL--~~~p~lLlLDEP~~~------------------~~i~~~l~~l~~~~g~tviivtHd 191 (280)
...... ... ..+.+ ..+|++|++|||++. .++++.|.+++++.|+|||++||+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 010110 111 11112 459999999999653 146677777777679999999996
Q ss_pred hhH----hhhccCCccccccccceEEEeec
Q 023563 192 GDY----LRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 192 l~~----~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
.+. +.. +||++++|++
T Consensus 180 ~~~~g~~~~~----------~~d~~l~l~~ 199 (231)
T 4a74_A 180 QANGGHILAH----------SATLRVYLRK 199 (231)
T ss_dssp C-------------------CCSEEEEEEE
T ss_pred ccCcchhhHh----------hceEEEEEEe
Confidence 654 554 8999999987
No 85
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.66 E-value=4.6e-17 Score=166.04 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=92.1
Q ss_pred CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccccc-ceeeeecccccccc-cccC
Q 023563 63 QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGL-DSIVTHDGVKLPCC-ALTT 140 (280)
Q Consensus 63 ~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~-~~v~~~~~~~~~~~-~~~~ 140 (280)
+++.+++|+||+ ++|++++|+||||||||||+ ++++|+...++.-.++++.. ...++ ..++.+.+...... ....
T Consensus 593 ~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlL-r~iagl~~~~q~G~~vpa~~-~~i~~~~~i~~~~~~~d~l~~~~st 669 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYM-RQTALIALMAYIGSYVPAQK-VEIGPIDRIFTRVGAADDLASGRST 669 (800)
T ss_dssp SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHH-HHHHHHHHHHTTTCCBSSSE-EEECCCCEEEEEEC-----------
T ss_pred CCceeeeccccc-CCCcEEEEECCCCCChHHHH-HHHHHHHHHHhcCcccchhc-ccceeHHHHHhhCCHHHHHHhhhhh
Confidence 556799999999 99999999999999999999 99998744221101222211 11111 11121111000000 0000
Q ss_pred -chHHHHHHh--hhhccCCCEEEEeCcc---cH---HH-HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccc
Q 023563 141 -LSSFRQKFG--SDAYDQVDVIGIDEAQ---FF---ED-LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLAD 210 (280)
Q Consensus 141 -l~~~~~~~a--~aL~~~p~lLlLDEP~---~~---~~-i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD 210 (280)
..+. .+.+ ...+.+|++||||||+ .. .. .+++++.+.++.|.++|++||+.+++. +||
T Consensus 670 f~~e~-~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-----------l~d 737 (800)
T 1wb9_A 670 FMVEM-TETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ-----------LPE 737 (800)
T ss_dssp CHHHH-HHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-----------HHH
T ss_pred hhHHH-HHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-----------Hhh
Confidence 0111 1122 2347899999999993 32 22 367788887645999999999998764 899
Q ss_pred eEEEeec-eeccccCcceee
Q 023563 211 SVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 211 ~i~~L~~-~i~~~g~~~~~~ 229 (280)
++..+.+ .+.+....+++.
T Consensus 738 ~~~~v~n~~~~~~~~~~~l~ 757 (800)
T 1wb9_A 738 KMEGVANVHLDALEHGDTIA 757 (800)
T ss_dssp HSTTEEEEEEEEEEETTEEE
T ss_pred hhhceEEEEEEEEEcCCcEE
Confidence 9888887 666554444443
No 86
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.65 E-value=1.9e-16 Score=144.75 Aligned_cols=156 Identities=20% Similarity=0.219 Sum_probs=96.7
Q ss_pred ceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCccc------------ccccce
Q 023563 58 PLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKDT------------RYGLDS 124 (280)
Q Consensus 58 ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~~------------~~~~~~ 124 (280)
+...++....++++||++++|++++|+||||||||||+ +.|+|+. ..+..+.+...+... +..+..
T Consensus 80 l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll-~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~ 158 (302)
T 3b9q_A 80 VLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSL-GKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEI 158 (302)
T ss_dssp HHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEE
T ss_pred HHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHH-HHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceE
Confidence 44445544445679999999999999999999999999 8899873 355666555433210 123334
Q ss_pred eeeecc-ccc------------------ccccccCc-----------hHHHHHHhhhhccCCC--EEEEeCcccHHHHHH
Q 023563 125 IVTHDG-VKL------------------PCCALTTL-----------SSFRQKFGSDAYDQVD--VIGIDEAQFFEDLYD 172 (280)
Q Consensus 125 v~~~~~-~~~------------------~~~~~~~l-----------~~~~~~~a~aL~~~p~--lLlLDEP~~~~~i~~ 172 (280)
+++... ... ..+...++ +......+++++.+|+ +|+|| |++.++...
T Consensus 159 v~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~ 237 (302)
T 3b9q_A 159 VVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 237 (302)
T ss_dssp ECCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred EEecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHH
Confidence 443222 100 00111111 1112222678899999 99999 999988777
Q ss_pred HHHHHHhhcCCEEEEEEechhHhhhccCCccccc-cccceEEEeec
Q 023563 173 FCREAADHDGKTVIVAGLDGDYLRRSFGSVIDII-PLADSVTKLTA 217 (280)
Q Consensus 173 ~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll-~~aD~i~~L~~ 217 (280)
.++++.++.|.|+|++|| ++...+ .|....+. .+.+.|.++..
T Consensus 238 ~~~~~~~~~g~t~iiiTh-lD~~~~-~g~~l~~~~~~~~pi~~i~~ 281 (302)
T 3b9q_A 238 QAREFNEVVGITGLILTK-LDGSAR-GGCVVSVVEELGIPVKFIGV 281 (302)
T ss_dssp HHHHHHHHTCCCEEEEEC-CSSCSC-THHHHHHHHHHCCCEEEEEC
T ss_pred HHHHHHHhcCCCEEEEeC-CCCCCc-cChheehHHHHCCCEEEEeC
Confidence 888887666999999999 343321 22222222 35677787776
No 87
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.64 E-value=1e-16 Score=165.24 Aligned_cols=130 Identities=13% Similarity=0.091 Sum_probs=76.7
Q ss_pred CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchH
Q 023563 64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSS 143 (280)
Q Consensus 64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 143 (280)
+..+++|+||++++|++++|+||||||||||| ++++++...++.-.+++........+..++.+.+.... + ..+...
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlL-r~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~-l-~~~~st 735 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYI-KQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADN-I-YKGRST 735 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHH-HHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC------------CC
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHH-HHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHH-H-HHhHHH
Confidence 46799999999999999999999999999999 88876533111111122111100001122222111000 0 011111
Q ss_pred H---HHHHhh--hhccCCCEEEEeCcccHH------HHH-HHHHHHHhhcCCEEEEEEechhHhh
Q 023563 144 F---RQKFGS--DAYDQVDVIGIDEAQFFE------DLY-DFCREAADHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 144 ~---~~~~a~--aL~~~p~lLlLDEP~~~~------~i~-~~l~~l~~~~g~tviivtHdl~~~~ 196 (280)
+ ..+.+. ..+.+|++||||||+.+. .+. .+++.++++.|.++|++||+++.+.
T Consensus 736 fs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 736 FMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred hhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence 1 111111 127899999999996543 344 6677776655999999999998774
No 88
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.64 E-value=2.1e-16 Score=147.47 Aligned_cols=130 Identities=18% Similarity=0.162 Sum_probs=88.9
Q ss_pred eeeEeeee-------EeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CCeeEEEecCCcccc--cccceeeeecccccc
Q 023563 66 NLHSEASV-------SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVAVIKSNKDTR--YGLDSIVTHDGVKLP 134 (280)
Q Consensus 66 ~vl~~isl-------~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~~~~~~~~~~--~~~~~v~~~~~~~~~ 134 (280)
..|+++.+ .+.+|++++|+||||||||||+ +++.|+.. .+..+..+....... .....+.+.. .
T Consensus 104 ~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL-~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~-~--- 178 (356)
T 3jvv_A 104 LTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTL-AAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQRE-V--- 178 (356)
T ss_dssp CCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHH-HHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEE-B---
T ss_pred CCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHH-HHHHhcccCCCCcEEEEccCcHHhhhhccccceeeee-e---
Confidence 34555555 6788999999999999999999 99988743 245554443322211 1111222211 1
Q ss_pred cccccCchHHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEE
Q 023563 135 CCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTK 214 (280)
Q Consensus 135 ~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~ 214 (280)
..+...+.+..+++|..+|++|++|||+.. +..+.+.+++.. |.+|++++|+.+.+. .|||++.
T Consensus 179 ---~~~~~~~~~~La~aL~~~PdvillDEp~d~-e~~~~~~~~~~~-G~~vl~t~H~~~~~~-----------~~dRli~ 242 (356)
T 3jvv_A 179 ---HRDTLGFSEALRSALREDPDIILVGEMRDL-ETIRLALTAAET-GHLVFGTLHTTSAAK-----------TIDRVVD 242 (356)
T ss_dssp ---TTTBSCHHHHHHHHTTSCCSEEEESCCCSH-HHHHHHHHHHHT-TCEEEEEESCSSHHH-----------HHHHHHH
T ss_pred ---ccccCCHHHHHHHHhhhCcCEEecCCCCCH-HHHHHHHHHHhc-CCEEEEEEccChHHH-----------HHHHHhh
Confidence 112234555678899999999999999854 445666666665 999999999999884 7899988
Q ss_pred ee
Q 023563 215 LT 216 (280)
Q Consensus 215 L~ 216 (280)
|.
T Consensus 243 l~ 244 (356)
T 3jvv_A 243 VF 244 (356)
T ss_dssp TS
T ss_pred hc
Confidence 84
No 89
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.62 E-value=5.2e-16 Score=133.42 Aligned_cols=150 Identities=11% Similarity=0.059 Sum_probs=86.9
Q ss_pred eeeeEeeee-EeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCCcccc---c---ccceeeeec---cc-c
Q 023563 65 RNLHSEASV-SSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSNKDTR---Y---GLDSIVTHD---GV-K 132 (280)
Q Consensus 65 ~~vl~~isl-~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~~~~~---~---~~~~v~~~~---~~-~ 132 (280)
...|+++.. .+++|++++|+||||||||||+ +.+++. ...+..+.++....... . .++..++.. .. .
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~-~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFS-LHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLII 87 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHH-HHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH-HHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEE
Confidence 346778877 8999999999999999999999 777754 34455666665432110 0 011111100 00 0
Q ss_pred ccc----------ccccCchHHHHHHhh-hhccCCC--EEEEeCccc--------HHHHHHHHHHHHhhcCCEEEEEEec
Q 023563 133 LPC----------CALTTLSSFRQKFGS-DAYDQVD--VIGIDEAQF--------FEDLYDFCREAADHDGKTVIVAGLD 191 (280)
Q Consensus 133 ~~~----------~~~~~l~~~~~~~a~-aL~~~p~--lLlLDEP~~--------~~~i~~~l~~l~~~~g~tviivtHd 191 (280)
... ........+...... ....+|+ +|++|||++ ..++++.|++++++.|.|||+++|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~ 167 (235)
T 2w0m_A 88 IDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQY 167 (235)
T ss_dssp EECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-
T ss_pred EeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 000 000122333332221 2235999 999999963 2457888888877779999999999
Q ss_pred hhHhhhccCCccccccccceEEEeec
Q 023563 192 GDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 192 l~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
...-.+..+ ..+..+||+|++|+.
T Consensus 168 ~~~~~~~~~--~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 168 AITTSQAFG--FGVEHVADGIIRFRR 191 (235)
T ss_dssp ------------CHHHHCSEEEEEEE
T ss_pred Ccccccccc--cchheeeeEEEEEEE
Confidence 932000000 112238999999988
No 90
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.61 E-value=7.4e-16 Score=156.43 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=81.5
Q ss_pred cEEEcCceEEe---CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---CCeeEEEecCCcccccccce-
Q 023563 52 MVSPRPPLFSL---QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---KGRNVAVIKSNKDTRYGLDS- 124 (280)
Q Consensus 52 ~l~~~~ls~~y---~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---~g~~i~~~~~~~~~~~~~~~- 124 (280)
.|++++..+-+ ++..+++|+||+ |++++|+||||||||||+ ++++|+.. .|.- ++.. +..++.
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlL-r~iagl~~~~~~G~~---vpa~---~~~i~~v 619 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFL-RQTALIALLAQVGSF---VPAE---EAHLPLF 619 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHH-HHHHHHHHHHTTTCC---BSSS---EEEECCC
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHH-HHHHhhhhhcccCce---eehh---ccceeeH
Confidence 46666654433 456789999999 999999999999999999 99998743 2221 1211 111111
Q ss_pred --eeeecccccccccccCchHHH-H--HHhhhh--ccCCCEEEEeCc---ccHHHH----HHHHHHHHhhcCCEEEEEEe
Q 023563 125 --IVTHDGVKLPCCALTTLSSFR-Q--KFGSDA--YDQVDVIGIDEA---QFFEDL----YDFCREAADHDGKTVIVAGL 190 (280)
Q Consensus 125 --v~~~~~~~~~~~~~~~l~~~~-~--~~a~aL--~~~p~lLlLDEP---~~~~~i----~~~l~~l~~~~g~tviivtH 190 (280)
++...... +.+ ..+.+.+. + ..++++ +.+|+++||||| |+..|- +.++..+.+ .|.++|++||
T Consensus 620 ~~i~~~~~~~-d~l-~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~-~g~~vl~~TH 696 (765)
T 1ewq_A 620 DGIYTRIGAS-DDL-AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATH 696 (765)
T ss_dssp SEEEEECCC--------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECC
T ss_pred HHhhccCCHH-HHH-HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh-CCCEEEEEeC
Confidence 11111100 000 01122221 1 124455 899999999999 877652 344455555 4999999999
Q ss_pred chhHhh
Q 023563 191 DGDYLR 196 (280)
Q Consensus 191 dl~~~~ 196 (280)
+.+++.
T Consensus 697 ~~~l~~ 702 (765)
T 1ewq_A 697 YFELTA 702 (765)
T ss_dssp CHHHHT
T ss_pred CHHHHH
Confidence 998774
No 91
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.61 E-value=1e-18 Score=159.95 Aligned_cols=146 Identities=10% Similarity=-0.051 Sum_probs=95.8
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccc-----cc-cccee
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDT-----RY-GLDSI 125 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~-----~~-~~~~v 125 (280)
+|+++||+++|+ ..+|+++||+|++|++++|+||||||||||+ ++|.|+. .|.-+.+++|.... +. .+...
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl-~lL~gl~-~G~I~~~v~q~~~lf~~ti~~~ni~~~ 177 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLC-NSLIHFL-GGSVLSFANHKSHFWLASLADTRAALV 177 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHH-HHHHHHH-TCEEECGGGTTSGGGGGGGTTCSCEEE
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHH-HHHhhhc-CceEEEEecCccccccccHHHHhhccC
Confidence 589999999998 7799999999999999999999999999999 9999987 66655555554321 11 11111
Q ss_pred eeeccc--------ccccccccCch-HHHHHHhhhhccCCCEEEEeCcccHHHHH--HHHHHHHhhcCCEEEEEEechhH
Q 023563 126 VTHDGV--------KLPCCALTTLS-SFRQKFGSDAYDQVDVIGIDEAQFFEDLY--DFCREAADHDGKTVIVAGLDGDY 194 (280)
Q Consensus 126 ~~~~~~--------~~~~~~~~~l~-~~~~~~a~aL~~~p~lLlLDEP~~~~~i~--~~l~~l~~~~g~tviivtHdl~~ 194 (280)
...... +...+....++ ..+++ ||+++.+|++|| |+..|.. +.+. . +||++..
T Consensus 178 ~~~~~~~~~~i~~~L~~gldg~~LSgGqkQR-ARAll~~p~iLl----Ts~LD~~~~~~i~----~-------ltH~~~~ 241 (305)
T 2v9p_A 178 DDATHACWRYFDTYLRNALDGYPVSIDRKHK-AAVQIKAPPLLV----TSNIDVQAEDRYL----Y-------LHSRVQT 241 (305)
T ss_dssp EEECHHHHHHHHHTTTGGGGTCCEECCCSSC-CCCEECCCCEEE----EESSCSTTCGGGG----G-------GTTTEEE
T ss_pred ccccHHHHHHHHHHhHccCCccCcCHHHHHH-HHHHhCCCCEEE----ECCCCHHHHHHHH----H-------HhCCHHH
Confidence 000000 00000001111 11122 889999999999 6555421 0111 1 2888876
Q ss_pred hhhccCCccccccccceEEEeec-eeccccCccee
Q 023563 195 LRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFF 228 (280)
Q Consensus 195 ~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~ 228 (280)
+. +||+| +|++ ++++.|+++++
T Consensus 242 ~~-----------~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 242 FR-----------FEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp EE-----------CCCCC-CCC---CCCCCCHHHH
T ss_pred HH-----------hCCEE-EEeCCEEEEeCCHHHH
Confidence 53 89999 9999 99999998876
No 92
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.60 E-value=1.9e-15 Score=127.77 Aligned_cols=120 Identities=16% Similarity=0.121 Sum_probs=69.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcch---hCCeeEEEecCCcccccccceeeeeccc---cccc--------c--cccCchH
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAET---QKGRNVAVIKSNKDTRYGLDSIVTHDGV---KLPC--------C--ALTTLSS 143 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl~---~~g~~i~~~~~~~~~~~~~~~v~~~~~~---~~~~--------~--~~~~l~~ 143 (280)
+++|+||||||||||+ ++|+|+. +.|........ ...+..++++++.... .... . ....++.
T Consensus 2 ~i~l~G~nGsGKTTLl-~~l~g~l~i~~~g~~~~~~~~-~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSg 79 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV-KKIVERLGKRAIGFWTEEVRD-PETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY 79 (178)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHGGGEEEEEEEEEC-------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhCCcCCCEEhhhhcc-ccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCH
Confidence 6899999999999999 9998863 22222211100 0112223333332100 0000 0 0112332
Q ss_pred HHH---HHhhh-----hccCCCEEEEeC--cccHHH--HHHHHHHHHhhcCCEEEEEEe---chhHhhhccCCccccccc
Q 023563 144 FRQ---KFGSD-----AYDQVDVIGIDE--AQFFED--LYDFCREAADHDGKTVIVAGL---DGDYLRRSFGSVIDIIPL 208 (280)
Q Consensus 144 ~~~---~~a~a-----L~~~p~lLlLDE--P~~~~~--i~~~l~~l~~~~g~tviivtH---dl~~~~~~~~~~~~ll~~ 208 (280)
-.. ..+++ ++.+|++||||| |++..+ ..+.+.++.++.+.|+|+++| |.+++.+ +
T Consensus 80 G~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~----------i 149 (178)
T 1ye8_A 80 FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKE----------I 149 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHH----------H
T ss_pred HHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHH----------H
Confidence 222 22675 899999999999 977653 445555555555787888885 8888876 8
Q ss_pred cce
Q 023563 209 ADS 211 (280)
Q Consensus 209 aD~ 211 (280)
||+
T Consensus 150 ~~r 152 (178)
T 1ye8_A 150 RRL 152 (178)
T ss_dssp HTC
T ss_pred Hhc
Confidence 887
No 93
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.59 E-value=1.8e-15 Score=141.39 Aligned_cols=145 Identities=20% Similarity=0.234 Sum_probs=92.2
Q ss_pred EeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCccc------------ccccceeeeecc-ccc-
Q 023563 69 SEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKDT------------RYGLDSIVTHDG-VKL- 133 (280)
Q Consensus 69 ~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~~------------~~~~~~v~~~~~-~~~- 133 (280)
..+||++++|++++|+||||||||||+ +.|+|+. ..+..+.+...+... +..+..+++... ...
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll-~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSL-GKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHH-HHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 578999999999999999999999999 8898873 345666555433210 123334443222 100
Q ss_pred -----------------ccccccC-----------chHHHHHHhhhhccCCC--EEEEeCcccHHHHHHHHHHHHhhcCC
Q 023563 134 -----------------PCCALTT-----------LSSFRQKFGSDAYDQVD--VIGIDEAQFFEDLYDFCREAADHDGK 183 (280)
Q Consensus 134 -----------------~~~~~~~-----------l~~~~~~~a~aL~~~p~--lLlLDEP~~~~~i~~~l~~l~~~~g~ 183 (280)
..+...+ ++......+++++.+|+ +|+|| |++.++....++++.++.|.
T Consensus 227 ~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~ 305 (359)
T 2og2_A 227 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGI 305 (359)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCC
T ss_pred hhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCC
Confidence 0011111 11112222678899999 99999 99998877778888766699
Q ss_pred EEEEEEechhHhhhccCCccccc-cccceEEEeec
Q 023563 184 TVIVAGLDGDYLRRSFGSVIDII-PLADSVTKLTA 217 (280)
Q Consensus 184 tviivtHdl~~~~~~~~~~~~ll-~~aD~i~~L~~ 217 (280)
|+|++|| ++...+ .|....+. .+++.|.++..
T Consensus 306 t~iiiTh-lD~~~~-gG~~lsi~~~~~~pI~~ig~ 338 (359)
T 2og2_A 306 TGLILTK-LDGSAR-GGCVVSVVEELGIPVKFIGV 338 (359)
T ss_dssp CEEEEES-CTTCSC-THHHHHHHHHHCCCEEEEEC
T ss_pred eEEEEec-Cccccc-ccHHHHHHHHhCCCEEEEeC
Confidence 9999999 343321 22222222 25667777765
No 94
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.53 E-value=8.6e-17 Score=154.01 Aligned_cols=161 Identities=15% Similarity=0.132 Sum_probs=100.6
Q ss_pred ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCC-eeEEEecCC---cc--------
Q 023563 51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKG-RNVAVIKSN---KD-------- 117 (280)
Q Consensus 51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g-~~i~~~~~~---~~-------- 117 (280)
++++++++++.|+ +..+|+++ |+|.+|++++|+||||||||||+ ++|+|+.... ..+....+. ..
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl-~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLL-GMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHH-HHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHH-HHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 4789999999997 67899999 99999999999999999999999 9999975322 233333331 00
Q ss_pred ---cccccceeeeeccccccccc-cc---------------------CchHHH---HHHhhhhccCCCEEEEeC---ccc
Q 023563 118 ---TRYGLDSIVTHDGVKLPCCA-LT---------------------TLSSFR---QKFGSDAYDQVDVIGIDE---AQF 166 (280)
Q Consensus 118 ---~~~~~~~v~~~~~~~~~~~~-~~---------------------~l~~~~---~~~a~aL~~~p~lLlLDE---P~~ 166 (280)
.+..+..++|........+. .. .+..+. ++.+.| +.+|++ -+ |..
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA-l~~p~~---t~glD~~~ 283 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA-IGEPPA---TKGYPPSV 283 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH-TTCCCC---SSSCCTTH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH-hCCCcc---cccCCHHH
Confidence 01122333332111111000 00 011110 111112 233333 00 133
Q ss_pred HHHHHHHHHHHHh---hcCC-----EEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 167 FEDLYDFCREAAD---HDGK-----TVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 167 ~~~i~~~l~~l~~---~~g~-----tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+..+.+++.++.+ +.|. ||+++|||++ .. +||++++|.+ +++..++++++.
T Consensus 284 ~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~----------iad~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 284 FAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DP----------IADSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp HHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CH----------HHHHHHHHSSEEEEECHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--ch----------hhceEEEEeCcEEEEeCCHHHcc
Confidence 4457777777765 2364 9999999999 32 8999999999 999999988765
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.53 E-value=1.3e-15 Score=148.74 Aligned_cols=159 Identities=11% Similarity=0.026 Sum_probs=93.1
Q ss_pred cEEEcCceEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEE-EecCCccccc--c---cc
Q 023563 52 MVSPRPPLFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVA-VIKSNKDTRY--G---LD 123 (280)
Q Consensus 52 ~l~~~~ls~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~-~~~~~~~~~~--~---~~ 123 (280)
.+++++++..|++ ..+| +..|++|++++|+||||||||||+ +.++|... .|..+. +..+...... . ++
T Consensus 257 ~~~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl-~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g 332 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTLLV-SRFVENACANKERAILFAYEESRAQLLRNAYSWG 332 (525)
T ss_dssp CCCCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHHHH-HHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTS
T ss_pred ccccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHHHH-HHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC
Confidence 4667777665543 1233 458999999999999999999999 88887643 455543 4444332100 0 00
Q ss_pred eeeeecccccccccc-------cCchH-HHHHHhhhhccCCCEEEEeCcc-----------cHHHHHHHHHHHHhhcCCE
Q 023563 124 SIVTHDGVKLPCCAL-------TTLSS-FRQKFGSDAYDQVDVIGIDEAQ-----------FFEDLYDFCREAADHDGKT 184 (280)
Q Consensus 124 ~v~~~~~~~~~~~~~-------~~l~~-~~~~~a~aL~~~p~lLlLDEP~-----------~~~~i~~~l~~l~~~~g~t 184 (280)
.-+.. ......+.. ..... .....++++..+|++||+| |+ .+..++++++.+++. |+|
T Consensus 333 ~~~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~-g~t 409 (525)
T 1tf7_A 333 MDFEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQE-EIT 409 (525)
T ss_dssp CCHHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHT-TCE
T ss_pred CCHHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhC-CCE
Confidence 00000 000000000 01111 1122266788999999999 93 344567778877765 999
Q ss_pred EEEEEechhHhhhccCCc-cccccccceEEEeec-e
Q 023563 185 VIVAGLDGDYLRRSFGSV-IDIIPLADSVTKLTA-R 218 (280)
Q Consensus 185 viivtHdl~~~~~~~~~~-~~ll~~aD~i~~L~~-~ 218 (280)
+|++||+...... +... ..+..+||+|++|+. +
T Consensus 410 vilvsh~~~~~~~-~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 410 GLFTNTSDQFMGA-HSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEEEECSSSSCC-CSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEEEECcccccCc-ccccCcccceeeeEEEEEEEEE
Confidence 9999999821110 1111 122348999999987 5
No 96
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.52 E-value=6.7e-16 Score=134.18 Aligned_cols=38 Identities=24% Similarity=0.137 Sum_probs=24.9
Q ss_pred eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
+.-|+||||+|++|++++|+||||||||||+ ++|.|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl-~~L~g~~ 47 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLI-KKLLNEF 47 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHH-HHHHHHS
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 4569999999999999999999999999999 9999876
No 97
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.51 E-value=2.4e-14 Score=131.34 Aligned_cols=56 Identities=13% Similarity=0.031 Sum_probs=41.6
Q ss_pred hhhhc----cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceE--EEee
Q 023563 149 GSDAY----DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSV--TKLT 216 (280)
Q Consensus 149 a~aL~----~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i--~~L~ 216 (280)
|++|+ .+|++||||||++.+ .++++|+++. + |.++|++||+.+.. + +||++ ++|.
T Consensus 231 a~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~tH~~~~~-~----------~~d~~~~v~~~ 297 (322)
T 1e69_A 231 ALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-HTQFIVITHNKIVM-E----------AADLLHGVTMV 297 (322)
T ss_dssp HHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-TSEEEEECCCTTGG-G----------GCSEEEEEEES
T ss_pred HHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEECCHHHH-h----------hCceEEEEEEe
Confidence 45565 588999999997654 4777888774 3 89999999997543 3 89987 5554
Q ss_pred c
Q 023563 217 A 217 (280)
Q Consensus 217 ~ 217 (280)
+
T Consensus 298 ~ 298 (322)
T 1e69_A 298 N 298 (322)
T ss_dssp S
T ss_pred C
Confidence 4
No 98
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.51 E-value=4.5e-16 Score=144.84 Aligned_cols=163 Identities=15% Similarity=0.114 Sum_probs=99.4
Q ss_pred ccEEEcCceEEeC-CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCe-eEEEecCCcc-ccc-------
Q 023563 51 SMVSPRPPLFSLQ-NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGR-NVAVIKSNKD-TRY------- 120 (280)
Q Consensus 51 ~~l~~~~ls~~y~-~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~-~i~~~~~~~~-~~~------- 120 (280)
++++.+++++.|+ +..+|+++ |+|.+|++++|+||||||||||+ ++|+|+..... .+.+..+... ...
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl-~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLL-GMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHH-HHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHH-HHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 3689999999998 77899999 99999999999999999999999 99999754332 3333332211 000
Q ss_pred -----ccceeeeeccccc----ccccc------------------cCchHHH---HHHhhhhccCCCE-EEEeCcccHHH
Q 023563 121 -----GLDSIVTHDGVKL----PCCAL------------------TTLSSFR---QKFGSDAYDQVDV-IGIDEAQFFED 169 (280)
Q Consensus 121 -----~~~~v~~~~~~~~----~~~~~------------------~~l~~~~---~~~a~aL~~~p~l-LlLDEP~~~~~ 169 (280)
.+..+.+...... ..... ..+..+. ++.+.+ +.+|++ -=+| |..+.+
T Consensus 122 ~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la-l~~p~~t~Gld-p~~~~~ 199 (347)
T 2obl_A 122 STLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA-SGEPDVRGGFP-PSVFSS 199 (347)
T ss_dssp HHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH-TTCCCCBTTBC-HHHHHH
T ss_pred hhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH-cCCCCcccCCC-HHHHHH
Confidence 0011111000000 00000 0011110 111112 233333 0000 133445
Q ss_pred HHHHHHHHHh-hcCC-----EEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcceee
Q 023563 170 LYDFCREAAD-HDGK-----TVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 170 i~~~l~~l~~-~~g~-----tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
+.++++++.+ +.|. ||+++|||++ .. +||++++|.+ +++..++++++.
T Consensus 200 l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~----------i~d~v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 200 LPKLLERAGPAPKGSITAIYTVLLESDNVN--DP----------IGDEVRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp HHHHHTTCEECSSSEEEEEEEEECCSSCCC--CH----------HHHHHHHHCSEEEEBCHHHHTTT
T ss_pred HHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Ch----------hhhheEEeeCcEEEEeCCHHHcC
Confidence 7777777764 3477 8999999999 32 8999999999 999999988764
No 99
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.50 E-value=4.1e-14 Score=121.01 Aligned_cols=148 Identities=15% Similarity=0.091 Sum_probs=85.5
Q ss_pred eeEeeee-EeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccc-ccccceeeeeccc----ccc---ccc
Q 023563 67 LHSEASV-SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDT-RYGLDSIVTHDGV----KLP---CCA 137 (280)
Q Consensus 67 vl~~isl-~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~-~~~~~~v~~~~~~----~~~---~~~ 137 (280)
.|+++.. -+++|++++|+||||||||||+ +.+++ ..+..+.++...... ...+.......+. ... ...
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~-~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLA-LQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFT 84 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHH-HHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEEC
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHH-HHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEe
Confidence 3444444 5899999999999999999999 77777 456677777544311 0000000000000 000 001
Q ss_pred ccCchHHHHH--HhhhhccC-CCEEEEeCcccH-----------HH---HHHHHHHHHhhcCCEEEEEEechhHhhh-cc
Q 023563 138 LTTLSSFRQK--FGSDAYDQ-VDVIGIDEAQFF-----------ED---LYDFCREAADHDGKTVIVAGLDGDYLRR-SF 199 (280)
Q Consensus 138 ~~~l~~~~~~--~a~aL~~~-p~lLlLDEP~~~-----------~~---i~~~l~~l~~~~g~tviivtHdl~~~~~-~~ 199 (280)
..+....... .+++++.+ |++|++|||++. .+ +++.|++++++.|.+||+++|....... .+
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 1122222222 24566665 999999999543 22 4555788877779999999998763210 00
Q ss_pred CC--ccccccccceEEEeec
Q 023563 200 GS--VIDIIPLADSVTKLTA 217 (280)
Q Consensus 200 ~~--~~~ll~~aD~i~~L~~ 217 (280)
.+ ...+..+||.+++|+.
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDK 184 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEE
T ss_pred ccCCCcceeecCcEEEEEEE
Confidence 00 0012348999999987
No 100
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.49 E-value=1.2e-14 Score=144.41 Aligned_cols=174 Identities=11% Similarity=0.006 Sum_probs=93.6
Q ss_pred cEEEcCceEEeCC--eeeeEee----------eeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh---------CCeeEE
Q 023563 52 MVSPRPPLFSLQN--RNLHSEA----------SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ---------KGRNVA 110 (280)
Q Consensus 52 ~l~~~~ls~~y~~--~~vl~~i----------sl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~---------~g~~i~ 110 (280)
++.++|+++.|++ +++|+.+ +|+++. ++|+||||||||||+ ++|.|+.. .|..+.
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL-~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVL-EALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHH-HHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHH-HHHhCCCCCCCCCeEEEcCEEEE
Confidence 5889999999975 3355444 477775 999999999999999 99999842 233432
Q ss_pred EecCC--cccccccceeeeecccccccccccCchHHHHHHh--------------hhhccCCCEEEEeCc------cc--
Q 023563 111 VIKSN--KDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFG--------------SDAYDQVDVIGIDEA------QF-- 166 (280)
Q Consensus 111 ~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a--------------~aL~~~p~lLlLDEP------~~-- 166 (280)
..... ...+..+++++|............++.......+ .+....|+++|+||| ++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~L 165 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQ 165 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCS
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCC
Confidence 22211 2233344555554332222222223332222221 123457999999999 54
Q ss_pred ----HHHHHHHHHHHH-hhcCCEEEEEEechhHhhhccCCccccc--cccceEEEeec-eeccccCcceee
Q 023563 167 ----FEDLYDFCREAA-DHDGKTVIVAGLDGDYLRRSFGSVIDII--PLADSVTKLTA-RCEFCGKRAFFT 229 (280)
Q Consensus 167 ----~~~i~~~l~~l~-~~~g~tviivtHdl~~~~~~~~~~~~ll--~~aD~i~~L~~-~i~~~g~~~~~~ 229 (280)
...+.++++++. +..+.++++++||++.+.+..-.+.+.+ .-...|.++.. ..+..|+.+++.
T Consensus 166 D~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 166 PADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred CHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHH
Confidence 346888888864 3458899999999986643100011111 11345788887 777778766554
No 101
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.48 E-value=1.2e-15 Score=144.96 Aligned_cols=136 Identities=10% Similarity=0.027 Sum_probs=83.1
Q ss_pred eeeeEeeeeEeeCce--------------------EEEEEcCCCCcHHHHHHHHHhcch--------hCCeeE---EEec
Q 023563 65 RNLHSEASVSSPSGE--------------------IHVIVGPMFAGKTTTLLRRIQAET--------QKGRNV---AVIK 113 (280)
Q Consensus 65 ~~vl~~isl~i~~Ge--------------------i~~liGpNGsGKSTLl~~~l~gl~--------~~g~~i---~~~~ 113 (280)
+.+|++|||+|++|+ +++|+||||||||||+ ++|.|+. ..+.++ +++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLl-n~L~Gl~~p~~GsI~~~g~~~t~~~~v~ 114 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFI-NTLRGIGNEEEGAAKTGVVEVTMERHPY 114 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHH-HHHHTCCTTSTTSCCCCC----CCCEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHH-HHHhCCCCccCceEEECCeecceeEEec
Confidence 468999999999999 9999999999999999 9999962 223222 2333
Q ss_pred CCcccccccceeeeeccc------ccccccccCc--------------hHHHHHHhhhhcc----------CCCEEEEeC
Q 023563 114 SNKDTRYGLDSIVTHDGV------KLPCCALTTL--------------SSFRQKFGSDAYD----------QVDVIGIDE 163 (280)
Q Consensus 114 ~~~~~~~~~~~v~~~~~~------~~~~~~~~~l--------------~~~~~~~a~aL~~----------~p~lLlLDE 163 (280)
+.... ..+ .+....+. ....+...++ ....-..+++|+. +|+++++||
T Consensus 115 q~~~~-~~l-tv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDE 192 (413)
T 1tq4_A 115 KHPNI-PNV-VFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNE 192 (413)
T ss_dssp ECSSC-TTE-EEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHH
T ss_pred ccccc-CCe-eehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCc
Confidence 32110 000 11110000 0000111111 1111223567777 999999999
Q ss_pred ccc------HHHHHHHHHHHHh----hc----CCEEEEEEechhH--hhhccCCccccccccceEE
Q 023563 164 AQF------FEDLYDFCREAAD----HD----GKTVIVAGLDGDY--LRRSFGSVIDIIPLADSVT 213 (280)
Q Consensus 164 P~~------~~~i~~~l~~l~~----~~----g~tviivtHdl~~--~~~~~~~~~~ll~~aD~i~ 213 (280)
|++ +.++++.++++.. +. ..+|++++|+++. +.+ +||+|.
T Consensus 193 PtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~----------L~d~I~ 248 (413)
T 1tq4_A 193 ADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPV----------LMDKLI 248 (413)
T ss_dssp HTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHH----------HHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHH----------HHHHHH
Confidence 965 4457888888752 22 3678899999887 665 677764
No 102
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.45 E-value=4.2e-14 Score=132.58 Aligned_cols=127 Identities=15% Similarity=0.135 Sum_probs=83.7
Q ss_pred eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-C-CeeEEEecCCccc--ccccceeeeecccccccccccCch
Q 023563 67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-K-GRNVAVIKSNKDT--RYGLDSIVTHDGVKLPCCALTTLS 142 (280)
Q Consensus 67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~-g~~i~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~l~ 142 (280)
+|++++ +++|++++|+||||||||||+ +.|.|+.. . ...+......... +..+..+.|..-. .+..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll-~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g-------~~~~ 196 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTI-ASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVG-------EDTK 196 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHH-HHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBT-------TTBS
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHH-HHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecC-------CCHH
Confidence 566655 899999999999999999999 99998743 2 4555444432211 2223333332100 0112
Q ss_pred HHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEee
Q 023563 143 SFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLT 216 (280)
Q Consensus 143 ~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~ 216 (280)
.+....+.+|..+|++|++|||+....+...++.. . .|.+|+.++|+.+ +.+ .+||++.|.
T Consensus 197 ~~~~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~-~-~g~~vi~t~H~~~-~~~----------~~~rl~~l~ 257 (372)
T 2ewv_A 197 SFADALRAALREDPDVIFVGEMRDLETVETALRAA-E-TGHLVFGTLHTNT-AID----------TIHRIVDIF 257 (372)
T ss_dssp CSHHHHHHHTTSCCSEEEESCCCSHHHHHHHHHHH-T-TTCEEEECCCCCS-HHH----------HHHHHHHTS
T ss_pred HHHHHHHHHhhhCcCEEEECCCCCHHHHHHHHHHH-h-cCCEEEEEECcch-HHH----------HHHHHHHhc
Confidence 23445567888999999999998666666656543 4 3999999999977 443 677776553
No 103
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.44 E-value=4.1e-13 Score=124.01 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=46.0
Q ss_pred hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
+++++.+|++||||||++.+ .++++|+++.++ |.+||++|||.+.. + +||+++.|..
T Consensus 266 a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~~~-~----------~~d~~~~l~~ 328 (339)
T 3qkt_A 266 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEELK-D----------AADHVIRISL 328 (339)
T ss_dssp HHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGGGG-G----------GCSEEEEEEE
T ss_pred HHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHHHH-H----------hCCEEEEEEe
Confidence 35677899999999997654 477888888765 89999999996643 3 8999999864
No 104
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.41 E-value=2.4e-13 Score=119.67 Aligned_cols=54 Identities=17% Similarity=0.103 Sum_probs=30.9
Q ss_pred EeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh------CCeeEEEecCC
Q 023563 61 SLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ------KGRNVAVIKSN 115 (280)
Q Consensus 61 ~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~------~g~~i~~~~~~ 115 (280)
+-+++.+|+|+||++++|+++||+||||||||||+ ++|.|+.- ..+.+.++++.
T Consensus 8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~-k~L~~~lG~~~~~~~~~~i~~v~~d 67 (245)
T 2jeo_A 8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVC-EKIMELLGQNEVEQRQRKVVILSQD 67 (245)
T ss_dssp ---------------CCSEEEEEECSTTSSHHHHH-HHHHHHHTGGGSCGGGCSEEEEEGG
T ss_pred cCCCceeecceeccCCCCEEEEEECCCCCCHHHHH-HHHHHHhchhcccccCCceEEEeCC
Confidence 34667899999999999999999999999999999 88887531 13456666654
No 105
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.38 E-value=8.4e-13 Score=118.19 Aligned_cols=121 Identities=13% Similarity=0.093 Sum_probs=69.1
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhC-----------CeeEEEecCCccccc---c---cceeeee-------cc
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-----------GRNVAVIKSNKDTRY---G---LDSIVTH-------DG 130 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-----------g~~i~~~~~~~~~~~---~---~~~v~~~-------~~ 130 (280)
+++|++++|+||||||||||+ +.+++.... +..+.|+........ . ++..++. +.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~-~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~ 105 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLA-LQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADG 105 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHH-HHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHH-HHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCc
Confidence 789999999999999999999 666654333 245555543321100 0 0000000 00
Q ss_pred cc-cccc--cccCchHHHHHHhhhhccCCCEEEEeCccc--------H---HHHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563 131 VK-LPCC--ALTTLSSFRQKFGSDAYDQVDVIGIDEAQF--------F---EDLYDFCREAADHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 131 ~~-~~~~--~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~--------~---~~i~~~l~~l~~~~g~tviivtHdl~~~~ 196 (280)
.. .+.. ....++.-.....++++.+|++|++|||+. . ..++..|++++++.|+|||+++|+.....
T Consensus 106 l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 106 LLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp EEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred eEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 00 0000 001111111222457788999999999965 1 35777888887666999999999988663
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.38 E-value=1.7e-12 Score=120.69 Aligned_cols=129 Identities=12% Similarity=0.031 Sum_probs=72.9
Q ss_pred eeEee-eeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh----C---CeeEEEecCCccc-ccccceeeeeccccc----
Q 023563 67 LHSEA-SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ----K---GRNVAVIKSNKDT-RYGLDSIVTHDGVKL---- 133 (280)
Q Consensus 67 vl~~i-sl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~----~---g~~i~~~~~~~~~-~~~~~~v~~~~~~~~---- 133 (280)
.|+.+ ++.|++|++++|+||||||||||+ +.+++... . +..+.|+...... +..+..+.+......
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~-~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVL 197 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHG
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHH-HHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 45555 689999999999999999999999 87877531 1 2454455432211 111222222111100
Q ss_pred ccccc---cCchHHHHH--Hhhhhc-------cCCCEEEEeCcccHH------------------HHHHHHHHHHhhcCC
Q 023563 134 PCCAL---TTLSSFRQK--FGSDAY-------DQVDVIGIDEAQFFE------------------DLYDFCREAADHDGK 183 (280)
Q Consensus 134 ~~~~~---~~l~~~~~~--~a~aL~-------~~p~lLlLDEP~~~~------------------~i~~~l~~l~~~~g~ 183 (280)
..+.. .+....... .+++++ .+|++||+|||++.. +++..|.+++++.|+
T Consensus 198 ~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~ 277 (349)
T 1pzn_A 198 KHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDI 277 (349)
T ss_dssp GGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 00000 011111111 133444 689999999995432 344556677766799
Q ss_pred EEEEEEechhHhh
Q 023563 184 TVIVAGLDGDYLR 196 (280)
Q Consensus 184 tviivtHdl~~~~ 196 (280)
|||+++|......
T Consensus 278 tvii~~h~~~~~~ 290 (349)
T 1pzn_A 278 AVFVTNQVQARPD 290 (349)
T ss_dssp EEEEEEECC----
T ss_pred EEEEEcccccccc
Confidence 9999999987554
No 107
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.38 E-value=5.8e-13 Score=121.64 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=75.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCccc------------ccccceeeeeccccc----------
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKDT------------RYGLDSIVTHDGVKL---------- 133 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~~------------~~~~~~v~~~~~~~~---------- 133 (280)
+|++++|+||||||||||+ +.|+|+. ..+..+.+...+... +..+..++|......
T Consensus 101 ~g~vi~lvG~nGsGKTTll-~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTI-AKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHH-HHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH-HHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 7899999999999999999 8898873 345666655443210 123444444221100
Q ss_pred ------c--cccccC-----------chHHHHHHhhhhccCCC--EEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEech
Q 023563 134 ------P--CCALTT-----------LSSFRQKFGSDAYDQVD--VIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDG 192 (280)
Q Consensus 134 ------~--~~~~~~-----------l~~~~~~~a~aL~~~p~--lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl 192 (280)
. .+...+ +.......+++++.+|+ ++.|| |+++.++++.++++.++.|.|+|++||+.
T Consensus 180 ~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 180 MKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 0 001111 11112223678999999 77899 76677888888888876699999999995
Q ss_pred hH
Q 023563 193 DY 194 (280)
Q Consensus 193 ~~ 194 (280)
..
T Consensus 259 ~~ 260 (304)
T 1rj9_A 259 GT 260 (304)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 108
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.38 E-value=1.2e-13 Score=131.41 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=38.5
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ 104 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~ 104 (280)
.+|.++||+++|+++.+++|+||+| +|+||||||||||+ +.+.|...
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLl-n~L~g~~~ 56 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLI-NSLFLTDL 56 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHH-HHHTTCCC
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHH-HHHhCCCC
Confidence 4799999999999999999999998 99999999999999 99998743
No 109
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.37 E-value=1.5e-13 Score=114.90 Aligned_cols=105 Identities=13% Similarity=0.008 Sum_probs=63.9
Q ss_pred eeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh--CCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHh
Q 023563 72 SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFG 149 (280)
Q Consensus 72 sl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a 149 (280)
+|++++|+.++|+||||+|||||+ +.+++... .|..+.++.... +... ............+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~-~~i~~~~~~~~g~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~---- 95 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLA-VATLKAIYEKKGIRGYFFDTKD--------LIFR---LKHLMDEGKDTKFL---- 95 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHH-HHHHHHHHHHSCCCCCEEEHHH--------HHHH---HHHHHHHTCCSHHH----
T ss_pred hccccCCCEEEEECCCCCCHHHHH-HHHHHHHHHHcCCeEEEEEHHH--------HHHH---HHHHhcCchHHHHH----
Confidence 466788999999999999999999 88888642 343333221100 0000 00000000111222
Q ss_pred hhhccCCCEEEEeCccc-------HHHHHHHHHHHHhhcCCEEEEEEechhH
Q 023563 150 SDAYDQVDVIGIDEAQF-------FEDLYDFCREAADHDGKTVIVAGLDGDY 194 (280)
Q Consensus 150 ~aL~~~p~lLlLDEP~~-------~~~i~~~l~~l~~~~g~tviivtHdl~~ 194 (280)
..+.+|++|+||||.. ...+.+++.+..++ |+++|++||....
T Consensus 96 -~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~-~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 96 -KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNN-LKSTIITTNYSLQ 145 (180)
T ss_dssp -HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHT-TCEEEEECCCCSC
T ss_pred -HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHc-CCCEEEEcCCChh
Confidence 2245899999999952 23466777776655 9999999997643
No 110
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.36 E-value=3.1e-14 Score=130.59 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=84.6
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeE-----------------------eeCceEEEEEcCCCCcHHHHHHHHHhcchhC--
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVS-----------------------SPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-- 105 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~-----------------------i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-- 105 (280)
..|++++|++.|+ ++++++++. +++|+++||+||||||||||+ ++|.|+...
T Consensus 42 ~~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~-~~L~gll~~~~ 118 (312)
T 3aez_A 42 EQIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTA-RVLQALLARWD 118 (312)
T ss_dssp CCCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHH-HHHHHHHHTST
T ss_pred CeEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHH-HHHHhhccccC
Confidence 3699999999995 567777764 899999999999999999999 999997542
Q ss_pred C-eeEEEecCCcccccccceeeeeccc-----ccccccccCchHHHHHH----------------------hhhhccCCC
Q 023563 106 G-RNVAVIKSNKDTRYGLDSIVTHDGV-----KLPCCALTTLSSFRQKF----------------------GSDAYDQVD 157 (280)
Q Consensus 106 g-~~i~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~l~~~~~~~----------------------a~aL~~~p~ 157 (280)
| ..+++++++...... .+...... .........+.++.+.. +++++.+|+
T Consensus 119 G~~~v~~v~qd~~~~~~--t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ 196 (312)
T 3aez_A 119 HHPRVDLVTTDGFLYPN--AELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPD 196 (312)
T ss_dssp TCCCEEEEEGGGGBCCH--HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCS
T ss_pred CCCeEEEEecCccCCcc--cHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCC
Confidence 3 568888776432110 00000000 00000001111111111 357889999
Q ss_pred EEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhh
Q 023563 158 VIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRR 197 (280)
Q Consensus 158 lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~ 197 (280)
+||+|||+...+-.. ..+.+..+ ..|+++|+.+...+
T Consensus 197 ilIlDep~~~~d~~~--~~l~~~~D-~~I~V~a~~~~~~~ 233 (312)
T 3aez_A 197 ILILEGLNVLQTGPT--LMVSDLFD-FSLYVDARIEDIEQ 233 (312)
T ss_dssp EEEEECTTTTCCCSS--CCGGGGCS-EEEEEEECHHHHHH
T ss_pred EEEECCccccCCcch--HHHHHhcC-cEEEEECCHHHHHH
Confidence 999999976642000 12222223 45778888876643
No 111
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.35 E-value=8.8e-13 Score=112.48 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
|++++|+||||||||||+ ++|+|+.
T Consensus 1 G~~i~i~G~nG~GKTTll-~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI-HKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHH-HHHHHHH
T ss_pred CCEEEEECCCCChHHHHH-HHHHhhc
Confidence 789999999999999999 8888864
No 112
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.34 E-value=1.4e-13 Score=128.54 Aligned_cols=146 Identities=14% Similarity=0.028 Sum_probs=93.6
Q ss_pred EEcCceEE---eCC--eeee---------EeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-CeeEEEecCCcc-
Q 023563 54 SPRPPLFS---LQN--RNLH---------SEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-GRNVAVIKSNKD- 117 (280)
Q Consensus 54 ~~~~ls~~---y~~--~~vl---------~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g~~i~~~~~~~~- 117 (280)
++++++++ |+. ..+| +++||+|++|++++|+||||||||||+ ++|.|+... .+.+.+-.....
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll-~~l~~~~~~~~g~I~ie~~~e~~ 215 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLM-KALMQEIPFDQRLITIEDVPELF 215 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHH-HHHHTTSCTTSCEEEEESSSCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHH-HHHHhcCCCCceEEEECCccccC
Confidence 67888887 753 3445 999999999999999999999999999 999997543 344433222110
Q ss_pred ---cccccceeeeecccccccccccCchHHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhH
Q 023563 118 ---TRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDY 194 (280)
Q Consensus 118 ---~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~ 194 (280)
.+..+..++++... .....-..+.+-...++..+|+.+++||+... +..+.+..+... ..|++.++|..+
T Consensus 216 ~~~~~~~v~~v~~q~~~----~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~-~~~~~l~~l~~g-~~~~l~t~H~~~- 288 (361)
T 2gza_A 216 LPDHPNHVHLFYPSEAK----EEENAPVTAATLLRSCLRMKPTRILLAELRGG-EAYDFINVAASG-HGGSITSCHAGS- 288 (361)
T ss_dssp CTTCSSEEEEECC--------------CCHHHHHHHHTTSCCSEEEESCCCST-HHHHHHHHHHTT-CCSCEEEEECSS-
T ss_pred ccccCCEEEEeecCccc----cccccccCHHHHHHHHHhcCCCEEEEcCchHH-HHHHHHHHHhcC-CCeEEEEECCCC-
Confidence 11112222201110 00001112333344567789999999999764 456677777653 457899999977
Q ss_pred hhhccCCccccccccceEEEeec
Q 023563 195 LRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 195 ~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
+.. .+||+..+..
T Consensus 289 ~~~----------~~~Rl~~l~~ 301 (361)
T 2gza_A 289 CEL----------TFERLALMVL 301 (361)
T ss_dssp HHH----------HHHHHHHHHT
T ss_pred HHH----------HHHHHHHHHh
Confidence 443 7899888876
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.34 E-value=2.3e-12 Score=111.67 Aligned_cols=143 Identities=13% Similarity=0.084 Sum_probs=72.2
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcc--hh-----CCeeEEEecCCcc--c------ccccceeeee--ccccc-cc
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAE--TQ-----KGRNVAVIKSNKD--T------RYGLDSIVTH--DGVKL-PC 135 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl--~~-----~g~~i~~~~~~~~--~------~~~~~~v~~~--~~~~~-~~ 135 (280)
-|++|++++|+||||||||||+ +.+++. .. .+..+.++..... . ...++...+. ++... ..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~-~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 98 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 98 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHH-HHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcCCeEEEEECCCCCcHHHHH-HHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence 3899999999999999999999 777772 21 1445555543321 0 0001111100 00000 00
Q ss_pred ccccCchHHHHHHhhhh-ccCCCEEEEeCcccH------------------HHHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563 136 CALTTLSSFRQKFGSDA-YDQVDVIGIDEAQFF------------------EDLYDFCREAADHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 136 ~~~~~l~~~~~~~a~aL-~~~p~lLlLDEP~~~------------------~~i~~~l~~l~~~~g~tviivtHdl~~~~ 196 (280)
................+ ..+|++|++|||+.. ..++..|.+++++.|+|||+++|......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 00011111111111111 258999999999432 13455566676667999999999877654
Q ss_pred h--ccC-------CccccccccceEEEeec
Q 023563 197 R--SFG-------SVIDIIPLADSVTKLTA 217 (280)
Q Consensus 197 ~--~~~-------~~~~ll~~aD~i~~L~~ 217 (280)
. .|. .-..+-.+||.+++|+.
T Consensus 179 ~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 179 GAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp ------------------CCTTCEEEEEEE
T ss_pred CccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 3 120 00113448999999986
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.34 E-value=3.6e-13 Score=117.41 Aligned_cols=119 Identities=10% Similarity=0.042 Sum_probs=65.9
Q ss_pred eEeeCceEEEEEcCCCCcHHHHHHHHHhcchhC---CeeEEEecCC--cccccccceeeeeccccc---------ccccc
Q 023563 73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK---GRNVAVIKSN--KDTRYGLDSIVTHDGVKL---------PCCAL 138 (280)
Q Consensus 73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~---g~~i~~~~~~--~~~~~~~~~v~~~~~~~~---------~~~~~ 138 (280)
-..++|++++|+||||||||||+ ++|.|+... ...+.+.... ...+.++.++++...... +.+..
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLl-k~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLI-QALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHH-HHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHH-HHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 45799999999999999999999 999886431 1222222211 112334556665322111 11111
Q ss_pred cC-chHHHHHHhhhhccCCCEEEEe-CcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhh
Q 023563 139 TT-LSSFRQKFGSDAYDQVDVIGID-EAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRR 197 (280)
Q Consensus 139 ~~-l~~~~~~~a~aL~~~p~lLlLD-EP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~ 197 (280)
.+ ..........+++..++++||| .|.....+++.+. + +++|+++||+++++.+
T Consensus 90 ~~~~yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~----~-~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 90 FGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMP----H-ARSIFILPPSKIELDR 145 (219)
T ss_dssp TTEEEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCT----T-CEEEEEECSSHHHHHH
T ss_pred HhccCCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHcc----C-CEEEEEECCCHHHHHH
Confidence 11 0000011123456678999999 2233334444433 4 8999999999998763
No 115
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.34 E-value=2.1e-12 Score=105.85 Aligned_cols=83 Identities=20% Similarity=0.265 Sum_probs=59.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ 155 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~ 155 (280)
+|+.++|+||||||||||+ +++++... .|.++.++...... .. +++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~-~~i~~~~~~~g~~~~~~~~~~~~--------~~----------------------~~~~~ 83 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL-QAWVAQALEAGKNAAYIDAASMP--------LT----------------------DAAFE 83 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH-HHHHHHHHTTTCCEEEEETTTSC--------CC----------------------GGGGG
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHHHhcCCcEEEEcHHHhh--------HH----------------------HHHhC
Confidence 8999999999999999999 99988643 33334333321100 00 23458
Q ss_pred CCEEEEeCccc-----HHHHHHHHHHHHhhcCCE-EEEEEec
Q 023563 156 VDVIGIDEAQF-----FEDLYDFCREAADHDGKT-VIVAGLD 191 (280)
Q Consensus 156 p~lLlLDEP~~-----~~~i~~~l~~l~~~~g~t-viivtHd 191 (280)
|++|++|||+. +..+++++.++.++ |++ +|++||.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~-g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNS-GKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHH-TCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHc-CCcEEEEECCC
Confidence 99999999943 34578888888776 888 8888884
No 116
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.31 E-value=2.5e-13 Score=129.23 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=42.0
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceE--EEEEcCCCCcHHHHHHHHHhcchhCCe
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEI--HVIVGPMFAGKTTTLLRRIQAETQKGR 107 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei--~~liGpNGsGKSTLl~~~l~gl~~~g~ 107 (280)
.+++++ +++|++.+ |+++||+|++|++ ++|+||||||||||+ ++|.|+.+.|.
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLl-n~L~G~~l~g~ 70 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLM-DTLFNTKFEGE 70 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHH-HHHHTSCC---
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHH-HHHhCccccCC
Confidence 477888 99999887 9999999999999 999999999999999 99999855443
No 117
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.26 E-value=8.8e-14 Score=115.47 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=45.6
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ 104 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~ 104 (280)
++.+++++.|+++.+++++||+|++|++++|+||||||||||+ ++|+|+..
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLl-r~l~g~l~ 58 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLT-RGMLQGIG 58 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHH-HHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHH-HHHHHhCC
Confidence 4456678899888899999999999999999999999999999 99999653
No 118
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.25 E-value=8.5e-12 Score=113.54 Aligned_cols=40 Identities=13% Similarity=0.153 Sum_probs=21.8
Q ss_pred cCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 56 RPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 56 ~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
+||+++|+++.++++++|+| +|+||||||||||+ +.|.|.
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl-~~L~g~ 41 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLI-NSLFLT 41 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHH-HHHHC-
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHH-HHHhCC
Confidence 57999999999999999999 99999999999999 888775
No 119
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.23 E-value=5.2e-11 Score=103.18 Aligned_cols=148 Identities=14% Similarity=0.059 Sum_probs=82.7
Q ss_pred eEee-eeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccc------cccceeeeec----ccc----
Q 023563 68 HSEA-SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTR------YGLDSIVTHD----GVK---- 132 (280)
Q Consensus 68 l~~i-sl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~------~~~~~v~~~~----~~~---- 132 (280)
|+.+ .--+++|++++|+||||||||||+++++.+....+..+.|+....... ..++..++.. ...
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~ 91 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDA 91 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEEC
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEec
Confidence 3444 446899999999999999999997456565555666777765432210 0111111100 000
Q ss_pred ----ccc---------ccccCchHHHHHHhhhh-ccCCCEEEEeCcccH--------HHHHHHHHHHHhhcCCEEEEEEe
Q 023563 133 ----LPC---------CALTTLSSFRQKFGSDA-YDQVDVIGIDEAQFF--------EDLYDFCREAADHDGKTVIVAGL 190 (280)
Q Consensus 133 ----~~~---------~~~~~l~~~~~~~a~aL-~~~p~lLlLDEP~~~--------~~i~~~l~~l~~~~g~tviivtH 190 (280)
... ....++..+..+....+ ..+|+++++|+|+.. .+++..+.+++++.|+|||+++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h 171 (247)
T 2dr3_A 92 FTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQ 171 (247)
T ss_dssp STTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred chhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 000 00112223333332222 158999999999532 23455566666667999999999
Q ss_pred chhHhhhccCCccccccccceEEEeec
Q 023563 191 DGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 191 dl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
....... +... .+..+||.|+.|+.
T Consensus 172 ~~~~~~~-~~~~-~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 172 VSVGERG-FGGP-GVEHGVDGIIRLDL 196 (247)
T ss_dssp CC----C-CC-C-CHHHHSSEEEEEEE
T ss_pred CCCCccc-cccc-ccceeEEEEEEEEE
Confidence 8775321 1100 13457899999987
No 120
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.23 E-value=2.1e-11 Score=113.74 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=44.7
Q ss_pred cCCCEEEEeCcccHHH------HHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563 154 DQVDVIGIDEAQFFED------LYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~~------i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~ 226 (280)
.+|++||||||++.+| +++.|.++ +.|+|++||+ +. .||++++|++ +++..|+++
T Consensus 291 ~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~qt~i~~th~-~~-------------~~~~i~~l~~G~i~~~g~~~ 352 (359)
T 2o5v_A 291 GEDPVLLLDDFTAELDPHRRQYLLDLAASV----PQAIVTGTEL-AP-------------GAALTLRAQAGRFTPVADEE 352 (359)
T ss_dssp SSCCEEEECCGGGCCCHHHHHHHHHHHHHS----SEEEEEESSC-CT-------------TCSEEEEEETTEEEECCCTT
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHhc----CcEEEEEEec-cc-------------cCCEEEEEECCEEEecCCHH
Confidence 7999999999977653 44444443 4689999994 32 5899999999 999999988
Q ss_pred ee
Q 023563 227 FF 228 (280)
Q Consensus 227 ~~ 228 (280)
++
T Consensus 353 ~~ 354 (359)
T 2o5v_A 353 MQ 354 (359)
T ss_dssp TS
T ss_pred HH
Confidence 76
No 121
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.19 E-value=2.6e-11 Score=111.84 Aligned_cols=117 Identities=16% Similarity=0.097 Sum_probs=73.7
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCCccc------------ccccceeeeeccccc-------
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSNKDT------------RYGLDSIVTHDGVKL------- 133 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~~~~------------~~~~~~v~~~~~~~~------- 133 (280)
..++|++++|+||||||||||+ +.|+|+ ...+..+.+...+... +.++..+.+......
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll-~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTI-AKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHH-HHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 4478999999999999999999 888886 3456666655433210 111112222111000
Q ss_pred ---------c--ccccc-------CchHHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEech
Q 023563 134 ---------P--CCALT-------TLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDG 192 (280)
Q Consensus 134 ---------~--~~~~~-------~l~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl 192 (280)
. .+... .+..-+...++++..++.+++||.++. .++++.++.+.++.+.|+|++||.-
T Consensus 204 l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 204 IQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 0 00001 111222334577888999999996655 5778888888877799999999953
No 122
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.18 E-value=3.1e-11 Score=116.65 Aligned_cols=127 Identities=18% Similarity=0.148 Sum_probs=79.1
Q ss_pred eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCcc------------cccccceeeeecccccc
Q 023563 68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKD------------TRYGLDSIVTHDGVKLP 134 (280)
Q Consensus 68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~------------~~~~~~~v~~~~~~~~~ 134 (280)
-+++||++++|++++|+||||||||||+ +.|+|+. ..+..+.+...+.. .+..+.++++.......
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl-~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTI-GKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHH-HHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 4689999999999999999999999999 8898874 45667766533221 12334455543221100
Q ss_pred c------------------ccccCc----hHHHH---HH---hhhh-ccCC-CEEEEeCcccHHHHHHHHHHHHhhcCCE
Q 023563 135 C------------------CALTTL----SSFRQ---KF---GSDA-YDQV-DVIGIDEAQFFEDLYDFCREAADHDGKT 184 (280)
Q Consensus 135 ~------------------~~~~~l----~~~~~---~~---a~aL-~~~p-~lLlLDEP~~~~~i~~~l~~l~~~~g~t 184 (280)
. +...+. ..+.. ++ ++++ ...| ++||...++.+.+.++.++.+.+..|.|
T Consensus 362 ~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~it 441 (503)
T 2yhs_A 362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLT 441 (503)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCC
Confidence 0 000111 11111 11 2222 3346 4565666888888778888888767999
Q ss_pred EEEEEechhHhh
Q 023563 185 VIVAGLDGDYLR 196 (280)
Q Consensus 185 viivtHdl~~~~ 196 (280)
.+++|| ++...
T Consensus 442 gvIlTK-LD~ta 452 (503)
T 2yhs_A 442 GITLTK-LDGTA 452 (503)
T ss_dssp EEEEEC-GGGCS
T ss_pred EEEEEc-CCCcc
Confidence 999999 55543
No 123
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.17 E-value=9.2e-11 Score=110.91 Aligned_cols=141 Identities=11% Similarity=0.102 Sum_probs=75.8
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHH--hcchh-----CCeeEEEecCCcccc--------cccceeeee--cccccccc
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRI--QAETQ-----KGRNVAVIKSNKDTR--------YGLDSIVTH--DGVKLPCC 136 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l--~gl~~-----~g~~i~~~~~~~~~~--------~~~~~v~~~--~~~~~~~~ 136 (280)
-|++|+++.|+||||||||||+ +.+ .+... .+..+.|+....... ..++..++. ++... .
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl-~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~--~ 250 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAY--A 250 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEE--E
T ss_pred CcCCCcEEEEEcCCCCChHHHH-HHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEE--e
Confidence 4899999999999999999999 633 34321 234455554332110 001111100 00000 0
Q ss_pred cccCchHHHHHHh--hh--hccCCCEEEEeCcccH------------------HHHHHHHHHHHhhcCCEEEEEEechhH
Q 023563 137 ALTTLSSFRQKFG--SD--AYDQVDVIGIDEAQFF------------------EDLYDFCREAADHDGKTVIVAGLDGDY 194 (280)
Q Consensus 137 ~~~~l~~~~~~~a--~a--L~~~p~lLlLDEP~~~------------------~~i~~~l~~l~~~~g~tviivtHdl~~ 194 (280)
...+......... .+ ...+|++|++|||+.. .++++.|++++++.|+|||+++|....
T Consensus 251 ~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~ 330 (400)
T 3lda_A 251 RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQ 330 (400)
T ss_dssp ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeeccc
Confidence 0111111111111 11 1258999999999431 346788888988889999999998432
Q ss_pred hhh--ccCC-------ccccccccceEEEeec
Q 023563 195 LRR--SFGS-------VIDIIPLADSVTKLTA 217 (280)
Q Consensus 195 ~~~--~~~~-------~~~ll~~aD~i~~L~~ 217 (280)
... +|++ -..|-..+|.+++|+.
T Consensus 331 ~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~ 362 (400)
T 3lda_A 331 VDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKK 362 (400)
T ss_dssp -----------------CHHHHHCSEEEEEEE
T ss_pred CCccccccCCCccCCchhHHHHhcceEEEEEe
Confidence 211 1210 1223346899998877
No 124
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.17 E-value=2.9e-12 Score=109.39 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=30.3
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCc
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNK 116 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~ 116 (280)
.++|+++||+||||||||||+ ++|.|+... .+.+++++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~-~~l~~~~~~--~i~~v~~d~ 41 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLA-QALARTLGE--RVALLPMDH 41 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHH-HHHHHHHGG--GEEEEEGGG
T ss_pred CCCcEEEEEECCCCCCHHHHH-HHHHHHhCC--CeEEEecCc
Confidence 578999999999999999999 999986432 466666654
No 125
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.12 E-value=1.3e-11 Score=114.81 Aligned_cols=146 Identities=11% Similarity=0.003 Sum_probs=84.7
Q ss_pred eEeeeeEeeC--ceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecC---Ccccc------cccceeeeecc
Q 023563 68 HSEASVSSPS--GEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKS---NKDTR------YGLDSIVTHDG 130 (280)
Q Consensus 68 l~~isl~i~~--Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~---~~~~~------~~~~~v~~~~~ 130 (280)
.+.|+++|.+ |+.++|+||||||||||+ ++|+|+... |+ + ++.+ ..... ..+..+.+. .
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLl-k~L~gl~~~~~~~e~G~-i-~i~~~~~~~~~~~~~~~~~~I~~~~q~-~ 233 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLV-NKLAAVFNTTSAWEYGR-E-FVFEKLGGDEQAMQYSDYPQMALGHQR-Y 233 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHH-HHHHHHTTCEEECCTTH-H-HHHHSSSSCTTSSCTTTHHHHHHHHHH-H
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHH-HHHHHHhCCCcchhhHH-H-HHHhhcCCCcccCChhHHHHHHHHHHH-H
Confidence 5679999999 999999999999999999 999997431 21 1 1110 00000 011111111 0
Q ss_pred ccc-----ccccccCchH----HHHH---------Hhhhh-ccCCCEEEEeC---cc------------cHHHHHHHHHH
Q 023563 131 VKL-----PCCALTTLSS----FRQK---------FGSDA-YDQVDVIGIDE---AQ------------FFEDLYDFCRE 176 (280)
Q Consensus 131 ~~~-----~~~~~~~l~~----~~~~---------~a~aL-~~~p~lLlLDE---P~------------~~~~i~~~l~~ 176 (280)
..+ ..+...+... .... .+.++ ..+|++++||| |. .+..+.+.|++
T Consensus 234 ~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~ 313 (365)
T 1lw7_A 234 IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKK 313 (365)
T ss_dssp HHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHH
T ss_pred HHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHH
Confidence 000 0011111000 0000 01122 36899999999 63 23457788877
Q ss_pred HHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeeceeccccCcceee
Q 023563 177 AADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTARCEFCGKRAFFT 229 (280)
Q Consensus 177 l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~~i~~~g~~~~~~ 229 (280)
+.++.|.++++++|. .+..+ +++++..+++ ++..++++++.
T Consensus 314 l~~~~~~~ililde~-~~~~r----------~~~~i~~i~~-~l~~~~~~~~~ 354 (365)
T 1lw7_A 314 LLDKYKVPYIEIESP-SYLDR----------YNQVKAVIEK-VLNEEEISELQ 354 (365)
T ss_dssp HHHGGGCCCEEEECS-SHHHH----------HHHHHHHHHH-HTSCCCCSSCC
T ss_pred HHHHcCCCEEEeCCC-CHHHH----------HHHHHHHHHH-HhcccchhHhh
Confidence 776568999999986 34443 7888887766 44566777765
No 126
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.08 E-value=9e-12 Score=104.64 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=38.6
Q ss_pred hccCCCEEEEeC---cccHHHHHHHHHHHHhhcCCEEEEEEec-hhHhhhccCCccccccccceEEEeec-eeccccCcc
Q 023563 152 AYDQVDVIGIDE---AQFFEDLYDFCREAADHDGKTVIVAGLD-GDYLRRSFGSVIDIIPLADSVTKLTA-RCEFCGKRA 226 (280)
Q Consensus 152 L~~~p~lLlLDE---P~~~~~i~~~l~~l~~~~g~tviivtHd-l~~~~~~~~~~~~ll~~aD~i~~L~~-~i~~~g~~~ 226 (280)
++.+|+...+|+ |..... ++.+..+... +.++|.+||. ++.+.+ +||+|+ ++ +++++|+++
T Consensus 115 l~~R~~~r~~d~~ld~~~~~~-~~~~~~~~~~-~~~ii~tsh~~~~~~e~----------~~~~i~--~~g~~~~~~~~~ 180 (189)
T 2bdt_A 115 LLRRDALRKKDEQMGERCLEL-VEEFESKGID-ERYFYNTSHLQPTNLND----------IVKNLK--TNPRFIFCMAGD 180 (189)
T ss_dssp HHHHTTTSCC----CGGGGHH-HHHHHHTTCC-TTSEEECSSSCGGGHHH----------HHHHHH--HCGGGSCC----
T ss_pred HHHHHHhccccccCCHHHHHH-HHHHhhcCCC-ccEEEeCCCCChhhHHH----------HHHHHh--hCCcEEEeecCC
Confidence 333444334443 233444 6667766544 7899999999 998887 999999 66 999988876
Q ss_pred eee
Q 023563 227 FFT 229 (280)
Q Consensus 227 ~~~ 229 (280)
-+-
T Consensus 181 ~~~ 183 (189)
T 2bdt_A 181 PLE 183 (189)
T ss_dssp ---
T ss_pred chh
Confidence 543
No 127
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.06 E-value=5.1e-10 Score=103.94 Aligned_cols=146 Identities=19% Similarity=0.156 Sum_probs=81.0
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc----cceeeeecccccccccccCchHHHHHHh
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG----LDSIVTHDGVKLPCCALTTLSSFRQKFG 149 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~l~~~~~~~a 149 (280)
-+++|+++.|.||+|||||||++.++......|..+.|+......... ++...+ .... ........+.. .+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~--~l~i--~~~~~~e~~l~-~~ 131 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTD--SLLV--SQPDTGEQALE-IA 131 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGG--GCEE--ECCSSHHHHHH-HH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHH--HeEE--ecCCCHHHHHH-HH
Confidence 378999999999999999999845555555567777777654321110 010000 0000 00112222222 23
Q ss_pred hhhc--cCCCEEEEeCcccHH-------------------HHHHHHHHH---HhhcCCEEEEEEechhHhhhccCC----
Q 023563 150 SDAY--DQVDVIGIDEAQFFE-------------------DLYDFCREA---ADHDGKTVIVAGLDGDYLRRSFGS---- 201 (280)
Q Consensus 150 ~aL~--~~p~lLlLDEP~~~~-------------------~i~~~l~~l---~~~~g~tviivtHdl~~~~~~~~~---- 201 (280)
++++ .+|++|++||++... .+.+.++++ +++.|++||+++|........|++
T Consensus 132 ~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~ 211 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETT 211 (349)
T ss_dssp HHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CC
T ss_pred HHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCccc
Confidence 3444 359999999994311 234455555 355699999999976644433432
Q ss_pred -cc-ccccccceEEEeec-eeccccC
Q 023563 202 -VI-DIIPLADSVTKLTA-RCEFCGK 224 (280)
Q Consensus 202 -~~-~ll~~aD~i~~L~~-~i~~~g~ 224 (280)
.. -|-.+||.++.++. +.+..|+
T Consensus 212 ~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 212 TGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp SSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCchHhhhccceEEEEEEeeeeecCc
Confidence 11 13357998888887 6555554
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.99 E-value=3.5e-11 Score=111.26 Aligned_cols=63 Identities=21% Similarity=0.180 Sum_probs=54.6
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCC
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSN 115 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~ 115 (280)
+|+++++++.|+++.+|+++||++.+|++++|+||||||||||+ +.|.|+. ..+.++.+...+
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl-~~l~g~~~~~~g~v~i~~~d 92 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTI-DALGSLLTAAGHKVAVLAVD 92 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEEEEC
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHH-HHHHHhhhhCCCEEEEEEEc
Confidence 68999999999888899999999999999999999999999999 8888864 346667666543
No 129
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.98 E-value=3.8e-10 Score=101.20 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcch
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
.++|+||||||||||+ ++|.|+.
T Consensus 4 ~v~lvG~nGaGKSTLl-n~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV-NTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhCCC
Confidence 4789999999999999 9999973
No 130
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.93 E-value=8.7e-10 Score=90.36 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=46.8
Q ss_pred hhhhccCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 149 GSDAYDQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 149 a~aL~~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
+++++.+|++||||||++.. .+.+.|.++.++ |.|||++|||.+ +.+ +||++++|+.
T Consensus 75 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~-~~~----------~~d~ii~l~~ 137 (148)
T 1f2t_B 75 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE-LKD----------AADHVIRISL 137 (148)
T ss_dssp HHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG-GGG----------GCSEEEEEEE
T ss_pred HHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHH-HHH----------hCCEEEEEEc
Confidence 36788999999999997654 477888887765 899999999995 444 8999999963
No 131
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.91 E-value=6.3e-11 Score=105.26 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=34.5
Q ss_pred ccEEEcCc-eEEe-CCeeeeEeeeeEeeC---ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 51 SMVSPRPP-LFSL-QNRNLHSEASVSSPS---GEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 51 ~~l~~~~l-s~~y-~~~~vl~~isl~i~~---Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
++|+++|+ +++| ++..+|+|+||+|.+ |++++|+|++||||||+. +.|++
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~-~~La~ 70 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVG-KIMAR 70 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHH-HHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHH-HHHHH
Confidence 48999999 9999 778899999999999 999999999999999999 88876
No 132
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.83 E-value=2.2e-09 Score=97.48 Aligned_cols=118 Identities=20% Similarity=0.198 Sum_probs=64.3
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcchh--CCeeEEEecCCcccccccceeeeecccc--cccccccCchHHHHHHhhh
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQ--KGRNVAVIKSNKDTRYGLDSIVTHDGVK--LPCCALTTLSSFRQKFGSD 151 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~--~g~~i~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~~~~~~~a~a 151 (280)
.+|++++|+|||||||||++ ..|++... .|+++.++..+.. +......+...... .+.....+...+.. +.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~-~~LA~~l~~~~G~~V~lv~~D~~-r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~--al~ 178 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTL-AKLAAISMLEKHKKIAFITTDTY-RIAAVEQLKTYAELLQAPLEVCYTKEEFQQ--AKE 178 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHH-HHHHHHHHHTTCCCEEEEECCCS-STTHHHHHHHHHTTTTCCCCBCSSHHHHHH--HHH
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHHHHHHHhcCCEEEEEecCcc-cchHHHHHHHHHHhcCCCeEecCCHHHHHH--HHH
Confidence 57999999999999999999 77877643 6778888876542 11110000000000 00000011122222 223
Q ss_pred hccCCCEEEEeCcc---cHHHHHHHHHHHHh---hcCCEEEE-EEechhHhhh
Q 023563 152 AYDQVDVIGIDEAQ---FFEDLYDFCREAAD---HDGKTVIV-AGLDGDYLRR 197 (280)
Q Consensus 152 L~~~p~lLlLDEP~---~~~~i~~~l~~l~~---~~g~tvii-vtHdl~~~~~ 197 (280)
.+.+|+++|+|.|- .....+..+.++.. ..++.+++ ++|+.+.+.+
T Consensus 179 ~~~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~ 231 (296)
T 2px0_A 179 LFSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKH 231 (296)
T ss_dssp HGGGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHH
T ss_pred HhcCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHH
Confidence 34899999999881 11233333434432 22334444 4899887765
No 133
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.82 E-value=1.9e-09 Score=111.14 Aligned_cols=69 Identities=25% Similarity=0.313 Sum_probs=60.0
Q ss_pred hhhhccCCC--EEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe-----
Q 023563 149 GSDAYDQVD--VIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL----- 215 (280)
Q Consensus 149 a~aL~~~p~--lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L----- 215 (280)
|++|+.+|+ +||||||++. ..++++|++++++ |.|||+||||++++. .||+|++|
T Consensus 476 AraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~-G~TvivVtHd~~~~~-----------~aD~ii~lgpgag 543 (916)
T 3pih_A 476 ATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL-GNTVIVVEHDEEVIR-----------NADHIIDIGPGGG 543 (916)
T ss_dssp HHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT-TCEEEEECCCHHHHH-----------TCSEEEEEESSSG
T ss_pred HHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-----------hCCEEEEEcCCcc
Confidence 678888777 9999999765 4588999999876 999999999999875 69999999
Q ss_pred -ec-eeccccCcceee
Q 023563 216 -TA-RCEFCGKRAFFT 229 (280)
Q Consensus 216 -~~-~i~~~g~~~~~~ 229 (280)
++ ++++.|+++++.
T Consensus 544 ~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 544 TNGGRVVFQGTVDELL 559 (916)
T ss_dssp GGCSEEEEEECHHHHH
T ss_pred cCCCEEEEeechhhhh
Confidence 77 999999998875
No 134
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.81 E-value=5e-09 Score=100.22 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=87.1
Q ss_pred eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCccccc---cc----cee-eee--cc----
Q 023563 66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDTRY---GL----DSI-VTH--DG---- 130 (280)
Q Consensus 66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~~~---~~----~~v-~~~--~~---- 130 (280)
..|+++..-+++|+++.|.|++|+|||||++.+...... .|..+.++........ .+ ..+ .++ .+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~ 270 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTP 270 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCH
Confidence 467778778999999999999999999999443333333 4667877764422100 00 000 000 00
Q ss_pred -----------------cccccccccCchHHHHHHhhhhc--cCCCEEEEeCccc----------H----HHHHHHHHHH
Q 023563 131 -----------------VKLPCCALTTLSSFRQKFGSDAY--DQVDVIGIDEAQF----------F----EDLYDFCREA 177 (280)
Q Consensus 131 -----------------~~~~~~~~~~l~~~~~~~a~aL~--~~p~lLlLDEP~~----------~----~~i~~~l~~l 177 (280)
............++.. .++.++ .+|+++++|+++. + .++...|+.+
T Consensus 271 ~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~-~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~l 349 (454)
T 2r6a_A 271 EDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRA-KCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKAL 349 (454)
T ss_dssp HHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHH-HHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHH-HHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 0000000012223322 233343 5899999999932 1 2366778888
Q ss_pred HhhcCCEEEEEEechhHhhhc---------cCCccccccccceEEEeec-ee
Q 023563 178 ADHDGKTVIVAGLDGDYLRRS---------FGSVIDIIPLADSVTKLTA-RC 219 (280)
Q Consensus 178 ~~~~g~tviivtHdl~~~~~~---------~~~~~~ll~~aD~i~~L~~-~i 219 (280)
+++.|++||+++|--...... +.+...+...||.|++|.. ..
T Consensus 350 Ake~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 350 ARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 888899999999921110000 0011123347999999987 54
No 135
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.80 E-value=7.7e-09 Score=100.65 Aligned_cols=117 Identities=16% Similarity=0.110 Sum_probs=71.6
Q ss_pred eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc-cc--eeeeecccccccccccCc
Q 023563 65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG-LD--SIVTHDGVKLPCCALTTL 141 (280)
Q Consensus 65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~l 141 (280)
..+++++++.+++|++++|+||||||||||+ ++|.|+......+..+......... .. .+..+... ..+-
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~------~~~~ 319 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGM------GEGE 319 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCS------SSCC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeeccc------ccCC
Confidence 3578899999999999999999999999999 9999986554444333322111110 00 01111110 0111
Q ss_pred hHHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEec
Q 023563 142 SSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLD 191 (280)
Q Consensus 142 ~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHd 191 (280)
..+.+....+|-++|+.++++|-...+ ....+..+.. |..++-+-|-
T Consensus 320 ~~~~~~l~~~LR~~PD~iivgEir~~E-~~~~l~a~~t--Gh~~~sT~Ha 366 (511)
T 2oap_1 320 IDMYDLLRAALRQRPDYIIVGEVRGRE-AQTLFQAMST--GHASYSTLHA 366 (511)
T ss_dssp BCHHHHHHTTGGGCCSEEEESCCCSTH-HHHHHHHHHT--TCEEEEEEEC
T ss_pred cCHHHHHHHhhccCCCeEEeCCcCHHH-HHHHHHhhcC--CCCccccccc
Confidence 122232334566899999999997664 5556655532 7776655563
No 136
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.80 E-value=6.9e-10 Score=93.82 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=35.4
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
+|+++|+++.|+ ..++++ |++++|..++|+|+||||||||+ +.+.|..
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl-~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSAL-NTLTNQK 50 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHH-TTTCCC-
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHH-HHHhCCC
Confidence 589999999997 467887 99999999999999999999999 8888854
No 137
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.79 E-value=1.3e-10 Score=105.91 Aligned_cols=59 Identities=25% Similarity=0.141 Sum_probs=50.0
Q ss_pred ccEEEcCceEEeCCeeeeEeeeeEe-------------------eCceEEEEEcCCCCcHHHHHHHHHhcchh---CCee
Q 023563 51 SMVSPRPPLFSLQNRNLHSEASVSS-------------------PSGEIHVIVGPMFAGKTTTLLRRIQAETQ---KGRN 108 (280)
Q Consensus 51 ~~l~~~~ls~~y~~~~vl~~isl~i-------------------~~Gei~~liGpNGsGKSTLl~~~l~gl~~---~g~~ 108 (280)
.+|+++||++.|+ ++++++++.+ .+|+++||+||||||||||+ ++|.|+.. .+..
T Consensus 36 ~~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~-~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 36 EDLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTA-RVLQALLSRWPEHRR 112 (308)
T ss_dssp TTCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHH-HHHHHHHTTSTTCCC
T ss_pred cccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHH-HHHHHHHhhCCCCCe
Confidence 4799999999994 6899999988 99999999999999999999 99999643 4445
Q ss_pred EEEe
Q 023563 109 VAVI 112 (280)
Q Consensus 109 i~~~ 112 (280)
+.++
T Consensus 113 i~vi 116 (308)
T 1sq5_A 113 VELI 116 (308)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5553
No 138
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.79 E-value=1.4e-09 Score=94.33 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=22.6
Q ss_pred eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHh-cch
Q 023563 66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ-AET 103 (280)
Q Consensus 66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~-gl~ 103 (280)
+..+++||++++|++++|+||||||||||+ ++|. |+.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~-~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVA-NKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHH-HHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHH-HHHHhcCC
Confidence 457899999999999999999999999999 9998 864
No 139
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.75 E-value=6.8e-09 Score=107.05 Aligned_cols=69 Identities=19% Similarity=0.148 Sum_probs=58.9
Q ss_pred hhhhccC--CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe-----
Q 023563 149 GSDAYDQ--VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL----- 215 (280)
Q Consensus 149 a~aL~~~--p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L----- 215 (280)
|++|+.+ |++||||||++.+ .+++.|+++++. |.|||+|+||++++. .||+|++|
T Consensus 516 A~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~-G~TVIvVeHdl~~i~-----------~ADrIi~LgpgaG 583 (972)
T 2r6f_A 516 ATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-GNTLIVVEHDEDTML-----------AADYLIDIGPGAG 583 (972)
T ss_dssp HHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT-TCEEEEECCCHHHHH-----------SCSEEEEECSSSG
T ss_pred HHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-----------hCCEEEEeCCCcc
Confidence 4468877 5999999997654 588999999765 999999999999875 79999999
Q ss_pred -ec-eeccccCcceee
Q 023563 216 -TA-RCEFCGKRAFFT 229 (280)
Q Consensus 216 -~~-~i~~~g~~~~~~ 229 (280)
++ ++++.|+++++.
T Consensus 584 ~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 584 IHGGEVVAAGTPEEVM 599 (972)
T ss_dssp GGCCSEEEEECTTTTT
T ss_pred CCCCEEEEecCHHHHH
Confidence 56 899999998876
No 140
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.73 E-value=3.8e-09 Score=89.11 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=25.4
Q ss_pred eeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 72 SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 72 sl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
|+++++|++++|+||||||||||+ ++|.|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~-~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLV-RALVKAL 31 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHH-HHHHHHS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHH-HHHHhhC
Confidence 678899999999999999999999 9998863
No 141
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.72 E-value=1e-08 Score=97.46 Aligned_cols=127 Identities=17% Similarity=0.179 Sum_probs=75.8
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcccccccceeeeecc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDTRYGLDSIVTHDG 130 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~~~~~~~v~~~~~ 130 (280)
.++++++++.|+...+|+++ +. .+|++++|+||||||||||+ ++|.|+.. ....|.......... ...+.+..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL-~allg~l~~~~g~I~~~ed~ie~~--~~~~~q~~- 216 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTL-YAGLQELNSSERNILTVEDPIEFD--IDGIGQTQ- 216 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHH-HHHHHHHCCTTSCEEEEESSCCSC--CSSSEEEE-
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEEecccchhc--cCCcceEE-
Confidence 57888999888777789998 64 89999999999999999999 98888643 345565554332111 11111100
Q ss_pred cccccccccCchHHHHHHhhhhccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEec
Q 023563 131 VKLPCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLD 191 (280)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHd 191 (280)
. ....+. .+....-.+|-++|+++++.|-.-...+.+.+... . .|..++-.-|.
T Consensus 217 v----~~~~g~-~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~-~-tGhlv~~tlh~ 270 (418)
T 1p9r_A 217 V----NPRVDM-TFARGLRAILRQDPDVVMVGEIRDLETAQIAVQAS-L-TGHLVMSTLHT 270 (418)
T ss_dssp C----BGGGTB-CHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHH-H-TTCEEEEEECC
T ss_pred E----ccccCc-CHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHH-H-hCCCcccccch
Confidence 0 000111 12222223456899999999964443444444332 2 36665444463
No 142
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.72 E-value=4.9e-09 Score=101.18 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=34.1
Q ss_pred eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
..+|+++||+|++ ++++|+||||||||||+ ++|+|+
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl-~~l~Gl 52 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTM-AGFVTA 52 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHH-HHHHHH
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHH-HHHhcC
Confidence 4579999999999 99999999999999999 999997
No 143
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.71 E-value=8.5e-09 Score=106.63 Aligned_cols=69 Identities=20% Similarity=0.168 Sum_probs=58.4
Q ss_pred hhhhccC--CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe-----
Q 023563 149 GSDAYDQ--VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL----- 215 (280)
Q Consensus 149 a~aL~~~--p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L----- 215 (280)
|++|+.+ |++||||||++.+ .+++.|+++++. |.|||+|+||++++. .||+|++|
T Consensus 533 A~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~-G~TVIvVeHdl~~i~-----------~ADrIi~Lgp~aG 600 (993)
T 2ygr_A 533 ATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDL-GNTLIVVEHDEDTIE-----------HADWIVDIGPGAG 600 (993)
T ss_dssp HHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHH-----------TCSEEEEECSSSG
T ss_pred HHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHc-CCEEEEECCCHHHHH-----------hCCEEEEecCccc
Confidence 4467887 5999999997654 488889999775 999999999999875 79999999
Q ss_pred -ec-eeccccCcceee
Q 023563 216 -TA-RCEFCGKRAFFT 229 (280)
Q Consensus 216 -~~-~i~~~g~~~~~~ 229 (280)
++ ++++.|+++++.
T Consensus 601 ~~gG~iv~~G~~~e~~ 616 (993)
T 2ygr_A 601 EHGGRIVHSGPYDELL 616 (993)
T ss_dssp GGCCSCCEEECHHHHH
T ss_pred cCCCEEEEeeCHHHhh
Confidence 56 899999988775
No 144
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.71 E-value=1.2e-08 Score=104.42 Aligned_cols=69 Identities=19% Similarity=0.208 Sum_probs=59.0
Q ss_pred hhhhccCC--CEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEe-----
Q 023563 149 GSDAYDQV--DVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKL----- 215 (280)
Q Consensus 149 a~aL~~~p--~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L----- 215 (280)
|++|+.+| .+|||||||+.+ .++++|+++++. |.|||+|+||++++. .||+|++|
T Consensus 391 A~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~-G~TVIvVeHdl~~l~-----------~aD~ii~lgpgaG 458 (842)
T 2vf7_A 391 ATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG-GNSLFVVEHDLDVIR-----------RADWLVDVGPEAG 458 (842)
T ss_dssp HHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT-TCEEEEECCCHHHHT-----------TCSEEEEECSSSG
T ss_pred HHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEcCCHHHHH-----------hCCEEEEeCCCcc
Confidence 45788898 599999997654 588889999875 999999999999764 79999999
Q ss_pred -ec-eeccccCcceee
Q 023563 216 -TA-RCEFCGKRAFFT 229 (280)
Q Consensus 216 -~~-~i~~~g~~~~~~ 229 (280)
++ ++++.|+++++.
T Consensus 459 ~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 459 EKGGEILYSGPPEGLK 474 (842)
T ss_dssp GGCCSEEEEECGGGGG
T ss_pred cCCCEEEEecCHHHHH
Confidence 56 899999988875
No 145
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.70 E-value=3e-08 Score=90.46 Aligned_cols=108 Identities=17% Similarity=0.156 Sum_probs=61.7
Q ss_pred eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCCcccccc---cceeeeecccc-cccccccCchHH
Q 023563 70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSNKDTRYG---LDSIVTHDGVK-LPCCALTTLSSF 144 (280)
Q Consensus 70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~~~~~~~---~~~v~~~~~~~-~~~~~~~~l~~~ 144 (280)
.++++..+|++++|+|||||||||++ ..|+++ ...|.++.+...+...... +..+....+.. .......+...+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~-~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v 174 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSC-GKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAV 174 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHH
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHH-HHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHH
Confidence 45677889999999999999999999 777775 3467777766543211000 00000000000 000000111111
Q ss_pred -HHHHhhhhccCCCEEEEeCcc---cHHHHHHHHHHHH
Q 023563 145 -RQKFGSDAYDQVDVIGIDEAQ---FFEDLYDFCREAA 178 (280)
Q Consensus 145 -~~~~a~aL~~~p~lLlLDEP~---~~~~i~~~l~~l~ 178 (280)
.+..++++..+|+++|+|||. ....+++.+.++.
T Consensus 175 ~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 175 AFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHH
Confidence 223456678899999999993 3445666665554
No 146
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.68 E-value=1.9e-08 Score=91.86 Aligned_cols=41 Identities=12% Similarity=0.015 Sum_probs=28.4
Q ss_pred ccCCCEEEEeCccc-----HHHHHHHHHHHHhhcCCEEEEEEechhHh
Q 023563 153 YDQVDVIGIDEAQF-----FEDLYDFCREAADHDGKTVIVAGLDGDYL 195 (280)
Q Consensus 153 ~~~p~lLlLDEP~~-----~~~i~~~l~~l~~~~g~tviivtHdl~~~ 195 (280)
..+|+++|+|||+. +..+++.+.+.. .+.++|++||+.+.+
T Consensus 132 ~~~~~vlilDE~~~L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 132 AHRYKCVIINEANSLTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPI 177 (354)
T ss_dssp --CCEEEEEECTTSSCHHHHHHHHHHHHHST--TTEEEEEEESCSCSS
T ss_pred CCCCeEEEEeCccccCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHH
Confidence 56899999999954 234555555543 278999999997644
No 147
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.61 E-value=2.1e-07 Score=86.59 Aligned_cols=137 Identities=18% Similarity=0.059 Sum_probs=76.8
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhc-chhCCeeEEEecCCcccccc----cceeeeecccccccccccCchHHHHHHh
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQA-ETQKGRNVAVIKSNKDTRYG----LDSIVTHDGVKLPCCALTTLSSFRQKFG 149 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~g-l~~~g~~i~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~l~~~~~~~a 149 (280)
+++|+++.|+||+|||||||+ ..++. +...+..+.|+......... ++...++ ..... .....+.... +
T Consensus 58 i~~G~i~~I~GppGsGKSTLa-l~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~-l~i~~---~~~~e~~l~~-~ 131 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLA-LHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKS-LLISQ---PDHGEQALEI-V 131 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHH-HHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGG-CEEEC---CSSHHHHHHH-H
T ss_pred ccCCcEEEEECCCCCCHHHHH-HHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhh-hhhhh---ccCHHHHHHH-H
Confidence 889999999999999999999 54444 44566777777554322110 1111110 00000 1112222221 1
Q ss_pred hhh--ccCCCEEEEeCccc-------------------HH---HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCc---
Q 023563 150 SDA--YDQVDVIGIDEAQF-------------------FE---DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSV--- 202 (280)
Q Consensus 150 ~aL--~~~p~lLlLDEP~~-------------------~~---~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~--- 202 (280)
..+ ...|+++++|+-+. .. +++..|..++++.|++||++.|-..-...+|++-
T Consensus 132 ~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~ 211 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETT 211 (356)
T ss_dssp HHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSC
T ss_pred HHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccC
Confidence 222 25799999998511 01 2445566777778999999999743332233211
Q ss_pred --cccc-cccceEEEeec
Q 023563 203 --IDII-PLADSVTKLTA 217 (280)
Q Consensus 203 --~~ll-~~aD~i~~L~~ 217 (280)
...+ -++|.++.|..
T Consensus 212 ~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 212 TGGLALKFYATMRMEVRR 229 (356)
T ss_dssp THHHHHHHHCSEEEEEEE
T ss_pred CCcchhhhhCcEEEEEEe
Confidence 1222 35787777775
No 148
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.61 E-value=1.3e-08 Score=92.26 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=46.6
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCC
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSN 115 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~ 115 (280)
+..+++++.|+... ++++|+ +|++++|+|+||+||||++ ..++++ ...+.++.+...+
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~-~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTA-AKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHH-HHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEecCC
Confidence 45778888887653 788998 9999999999999999999 878876 3457777766544
No 149
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.59 E-value=2.9e-09 Score=100.34 Aligned_cols=58 Identities=16% Similarity=0.050 Sum_probs=40.7
Q ss_pred CC--CEEEEeCcccHHH------HHHHHHHH-HhhcCCEEEEEEechhHhhhccCCccccccccceEE-Eeec--eeccc
Q 023563 155 QV--DVIGIDEAQFFED------LYDFCREA-ADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVT-KLTA--RCEFC 222 (280)
Q Consensus 155 ~p--~lLlLDEP~~~~~------i~~~l~~l-~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~-~L~~--~i~~~ 222 (280)
+| +++++|||+...+ .++.+.+. .+ .|.|++ +|++..+.+ +||++. .|.+ +.+..
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~--sh~~~~~~~----------l~~~i~~~L~~G~~~~~~ 205 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE--MKAKKEEQA----------IIEKVYQYLTETKQPIRK 205 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS--HHHHHHHHH----------HHHHHHHHHHTTCSCGGG
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccHHHHHH----------HHHHHHHHhccCCceeec
Confidence 88 9999999966554 45555555 44 377754 999998876 899988 6655 35555
Q ss_pred cCc
Q 023563 223 GKR 225 (280)
Q Consensus 223 g~~ 225 (280)
|+.
T Consensus 206 ~~~ 208 (392)
T 1ni3_A 206 GDW 208 (392)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 150
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.59 E-value=1.6e-07 Score=89.05 Aligned_cols=34 Identities=18% Similarity=0.042 Sum_probs=32.3
Q ss_pred eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
-++++|+++.|+.++|+|+||||||||+ +.|.+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL-~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLL-AAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHH-HHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHH-HHHHcC
Confidence 4799999999999999999999999999 999886
No 151
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.54 E-value=1e-08 Score=86.96 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=36.7
Q ss_pred cCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 56 RPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 56 ~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
+|+++.++...+.+..++..++|++++|+|||||||||++ +.|++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~-~~La~~l 49 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLA-CALNQML 49 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHH-HHHHHHH
Confidence 5788888888888899999999999999999999999999 8888854
No 152
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.54 E-value=3.6e-08 Score=81.76 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=28.7
Q ss_pred EeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 69 SEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 69 ~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
++++|++.+| +++|+|||||||||++ .+|.++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll-~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIG-DAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHH-HHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHH-HHHHHH
Confidence 6788999999 9999999999999999 877664
No 153
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.51 E-value=1.4e-07 Score=90.99 Aligned_cols=123 Identities=20% Similarity=0.203 Sum_probs=71.1
Q ss_pred EEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeeccccc
Q 023563 54 SPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKL 133 (280)
Q Consensus 54 ~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~ 133 (280)
+++++...+.....++++++.+++| +.|+||+|+|||||+ +.+++.. +.....+..... .
T Consensus 27 ~l~e~v~~l~~~~~~~~~g~~~p~g--vLL~GppGtGKT~La-raia~~~--~~~f~~is~~~~--------~------- 86 (476)
T 2ce7_A 27 ELKEVVEFLKDPSKFNRIGARMPKG--ILLVGPPGTGKTLLA-RAVAGEA--NVPFFHISGSDF--------V------- 86 (476)
T ss_dssp HHHHHHHHHHCTHHHHTTTCCCCSE--EEEECCTTSSHHHHH-HHHHHHH--TCCEEEEEGGGT--------T-------
T ss_pred HHHHHHHHhhChHHHhhcCCCCCCe--EEEECCCCCCHHHHH-HHHHHHc--CCCeeeCCHHHH--------H-------
Confidence 3444444454445677888889988 789999999999999 9888732 112211111000 0
Q ss_pred ccccccCchHHHHHHhhhhccCCCEEEEeCcccH----------------HHHHHHHHHHH---hhcCCEEEEEEechhH
Q 023563 134 PCCALTTLSSFRQKFGSDAYDQVDVIGIDEAQFF----------------EDLYDFCREAA---DHDGKTVIVAGLDGDY 194 (280)
Q Consensus 134 ~~~~~~~l~~~~~~~a~aL~~~p~lLlLDEP~~~----------------~~i~~~l~~l~---~~~g~tviivtHdl~~ 194 (280)
....-.+...+...+..+....|.+|++||+... ..+.+++..+- ...+..||.+||..+.
T Consensus 87 ~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~ 166 (476)
T 2ce7_A 87 ELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDI 166 (476)
T ss_dssp TCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGG
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhh
Confidence 0000001122333345566678999999999320 11333343332 2337889999999875
Q ss_pred hh
Q 023563 195 LR 196 (280)
Q Consensus 195 ~~ 196 (280)
+.
T Consensus 167 Ld 168 (476)
T 2ce7_A 167 LD 168 (476)
T ss_dssp SC
T ss_pred hc
Confidence 43
No 154
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.48 E-value=3.9e-08 Score=89.80 Aligned_cols=39 Identities=21% Similarity=0.074 Sum_probs=28.3
Q ss_pred hccCCCEEEEeCcccHHHHHHHHHHHHhhcCCEEEEEEechhHhhh
Q 023563 152 AYDQVDVIGIDEAQFFEDLYDFCREAADHDGKTVIVAGLDGDYLRR 197 (280)
Q Consensus 152 L~~~p~lLlLDEP~~~~~i~~~l~~l~~~~g~tviivtHdl~~~~~ 197 (280)
++.+|+++ ||| ..+.+.|++++ . +.+|+++||+...+..
T Consensus 156 ll~k~dl~--de~---~~l~~~l~~l~-~-~~~ii~~sh~~~~~~~ 194 (318)
T 1nij_A 156 LLTKTDVA--GEA---EKLHERLARIN-A-RAPVYTVTHGDIDLGL 194 (318)
T ss_dssp EEECTTTC--SCT---HHHHHHHHHHC-S-SSCEEECCSSCCCGGG
T ss_pred EEECcccC--CHH---HHHHHHHHHhC-C-CCeEEEecccCCCHHH
Confidence 44666654 777 67888888875 3 8999999997554443
No 155
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.48 E-value=6.7e-08 Score=80.55 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=25.8
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.+++|++++|+|||||||||++ ++|++.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~-~~La~~ 32 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIA-EALANL 32 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHH-HHHHTC
T ss_pred CCCCCeEEEEECCCCCCHHHHH-HHHHhc
Confidence 4789999999999999999999 999986
No 156
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.46 E-value=6.4e-08 Score=81.89 Aligned_cols=37 Identities=22% Similarity=0.001 Sum_probs=22.5
Q ss_pred CeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 64 NRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 64 ~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
...+++||||++++|++++|+||+||||||+. +.|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~-~~La~ 47 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLG-KAFAR 47 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHH-HHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHH-HHHHH
Confidence 35689999999999999999999999999999 87775
No 157
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.45 E-value=7.5e-07 Score=82.11 Aligned_cols=142 Identities=13% Similarity=0.127 Sum_probs=73.2
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcc-hh------CCeeEEEecCCcccc-cccceeeee---------ccccc-cc
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQ------KGRNVAVIKSNKDTR-YGLDSIVTH---------DGVKL-PC 135 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~------~g~~i~~~~~~~~~~-~~~~~v~~~---------~~~~~-~~ 135 (280)
-+++|+++.|.||+|+|||||+ ..++.. .. .+..+.|+....... ..+...... ++... ..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla-~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHH-HHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCeEEEEECCCCCCHHHHH-HHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence 4889999999999999999999 444432 12 355666765443210 000000000 00000 00
Q ss_pred ccccCchHHHHHHhhhhc----cCCCEEEEeCcccH------------------HHHHHHHHHHHhhcCCEEEEEEechh
Q 023563 136 CALTTLSSFRQKFGSDAY----DQVDVIGIDEAQFF------------------EDLYDFCREAADHDGKTVIVAGLDGD 193 (280)
Q Consensus 136 ~~~~~l~~~~~~~a~aL~----~~p~lLlLDEP~~~------------------~~i~~~l~~l~~~~g~tviivtHdl~ 193 (280)
.....+..+.... ..++ .++++|++|+.+.. .+++..|++++++.|.+||+++|...
T Consensus 197 ~~~e~~~~ll~~l-~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 197 YTSEHQMELLDYV-AAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp CSTTHHHHHHHHH-HHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred CCHHHHHHHHHHH-HHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 0111111222111 1222 68999999998421 12445566777778999999999776
Q ss_pred Hhhh--cc-CC----c--cccccccceEEEeec
Q 023563 194 YLRR--SF-GS----V--IDIIPLADSVTKLTA 217 (280)
Q Consensus 194 ~~~~--~~-~~----~--~~ll~~aD~i~~L~~ 217 (280)
.... .| ++ . .-|-..+|-++.|..
T Consensus 276 ~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r 308 (343)
T 1v5w_A 276 DPGATMTFQADPKKPIGGHILAHASTTRISLRK 308 (343)
T ss_dssp -----------------CCTTTTSSSEEEEEEE
T ss_pred cCCCccccCCCCCcCCchHHHHHhCCEEEEEEE
Confidence 5433 34 11 0 124456788888775
No 158
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.42 E-value=8.1e-07 Score=81.38 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=38.4
Q ss_pred eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCC
Q 023563 68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSN 115 (280)
Q Consensus 68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~ 115 (280)
+++++|++++|++++|+||||+||||++ ..|+++ ...|+++.++..+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~-~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSL-AKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHH-HHHHHHHHHTTCCEEEEECC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHH-HHHHHHHHHCCCeEEEEeCC
Confidence 4689999999999999999999999999 777765 4467777776544
No 159
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.41 E-value=1.6e-06 Score=80.49 Aligned_cols=145 Identities=21% Similarity=0.145 Sum_probs=74.7
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccc---cccCchHHHHHHhhh
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCC---ALTTLSSFRQKFGSD 151 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~l~~~~~~~a~a 151 (280)
+++|+++.|.||+|+|||||++.++......|..+.|+.......... ....+.....+ .......+.+. .+.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~---a~~~g~~~~~l~i~~~~~~e~~~~~-~~~ 135 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDNLLCSQPDTGEQALEI-CDA 135 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH---HHHTTCCGGGCEEECCSSHHHHHHH-HHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH---HHHcCCChhheeeeCCCCHHHHHHH-HHH
Confidence 889999999999999999999555544455667777776532211000 00000000000 00112222221 122
Q ss_pred h--ccCCCEEEEeCccc---H--------------H--HHHHHHHHH---HhhcCCEEEEEEechhHhhhccCCc-----
Q 023563 152 A--YDQVDVIGIDEAQF---F--------------E--DLYDFCREA---ADHDGKTVIVAGLDGDYLRRSFGSV----- 202 (280)
Q Consensus 152 L--~~~p~lLlLDEP~~---~--------------~--~i~~~l~~l---~~~~g~tviivtHdl~~~~~~~~~~----- 202 (280)
+ -.+++++++|+++. . . .+.+.++++ +++.|++||++.|-.......|++-
T Consensus 136 l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~g 215 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTG 215 (356)
T ss_dssp HHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------CTT
T ss_pred HHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCC
Confidence 2 25899999999932 1 0 223344444 5667999999999766555445331
Q ss_pred c-ccccccceEEEeec-eecccc
Q 023563 203 I-DIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 203 ~-~ll~~aD~i~~L~~-~i~~~g 223 (280)
. -|-.+||-++.+.. +....|
T Consensus 216 G~~l~~~advrl~l~r~~~~k~g 238 (356)
T 1u94_A 216 GNALKFYASVRLDIRRIGAVKEG 238 (356)
T ss_dssp CSHHHHHCSEEEEEEEEEEEESS
T ss_pred CcceeeeccEEEEEEEeeeeccC
Confidence 1 23346888887776 544333
No 160
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.40 E-value=9.9e-08 Score=81.37 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=31.1
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecC
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKS 114 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~ 114 (280)
.++|++++|+||||||||||+ ++|.|+.. .|..++++.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~-~~l~~~~~~~g~~~g~v~~ 58 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLS-NPLAAALSAQGLPAEVVPM 58 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHH-HHHHHHHHHTTCCEEEEES
T ss_pred CCCCeEEEEECCCCCCHHHHH-HHHHHHHhhcCCceEEEec
Confidence 578999999999999999999 99998754 2444555554
No 161
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.40 E-value=7.9e-08 Score=81.66 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=22.4
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
++|++++|+||||||||||+ ++|.|+.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl-~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLL-KKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 57999999999999999999 9998864
No 162
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.38 E-value=1.4e-07 Score=79.46 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=25.4
Q ss_pred eEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
++|++|++++|+|||||||||++ ++|.++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~-~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVR-KRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHH-HHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHH-HHHHHhh
Confidence 46889999999999999999999 9998865
No 163
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.38 E-value=1.4e-06 Score=79.47 Aligned_cols=143 Identities=9% Similarity=0.057 Sum_probs=69.3
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcchhC------CeeEEEecCCccc-ccccceeeeeccccc----cc---cccc
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK------GRNVAVIKSNKDT-RYGLDSIVTHDGVKL----PC---CALT 139 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~------g~~i~~~~~~~~~-~~~~~~v~~~~~~~~----~~---~~~~ 139 (280)
-+++|+++.|.||+|+|||||++.++...... +..+.|+.-.... ...+.......+... .. ....
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 48999999999999999999994433332222 5566676544321 000000000000000 00 0011
Q ss_pred CchH---HHHHHhhhhc---cCCCEEEEeCcccH------------------HHHHHHHHHHHhhcCCEEEEEEechhHh
Q 023563 140 TLSS---FRQKFGSDAY---DQVDVIGIDEAQFF------------------EDLYDFCREAADHDGKTVIVAGLDGDYL 195 (280)
Q Consensus 140 ~l~~---~~~~~a~aL~---~~p~lLlLDEP~~~------------------~~i~~~l~~l~~~~g~tviivtHdl~~~ 195 (280)
+..+ +.... .+++ .+|++|++|+.+.. .+++..|++++++.|.+||++.|-....
T Consensus 183 ~~~~~~~~l~~l-~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~ 261 (324)
T 2z43_A 183 NTDHQIAIVDDL-QELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARP 261 (324)
T ss_dssp SHHHHHHHHHHH-HHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC----
T ss_pred CHHHHHHHHHHH-HHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecC
Confidence 1121 12211 2233 58999999998421 1244556667777799999999976544
Q ss_pred hhccCCc------cccccccceEEEeec
Q 023563 196 RRSFGSV------IDIIPLADSVTKLTA 217 (280)
Q Consensus 196 ~~~~~~~------~~ll~~aD~i~~L~~ 217 (280)
...|++. .-|-..+|.++.|..
T Consensus 262 ~~~~~~~~~~~gg~~l~~~~d~~l~l~r 289 (324)
T 2z43_A 262 DMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 (324)
T ss_dssp --------------------CEEEEEEE
T ss_pred CCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence 3333210 113345777777764
No 164
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.31 E-value=1.5e-08 Score=92.89 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=46.2
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCc-------eEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSG-------EIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~G-------ei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
+++.++++..||+..+++++++.+.+| +.++|+||||+|||||+ +++++..
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa-~~ia~~l 75 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA-HIIASEL 75 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH-HHHHHHH
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH-HHHHHHh
Confidence 578889999999888999999999887 89999999999999999 9998854
No 165
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.31 E-value=1.7e-07 Score=78.49 Aligned_cols=26 Identities=38% Similarity=0.470 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQAETQ 104 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~gl~~ 104 (280)
|++++|+||||||||||+ ++|.|+..
T Consensus 1 ~~ii~l~GpsGaGKsTl~-~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL-KKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHH-HHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHH-HHHHhhCC
Confidence 678999999999999999 99988643
No 166
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.29 E-value=5.9e-07 Score=87.20 Aligned_cols=56 Identities=14% Similarity=0.009 Sum_probs=48.0
Q ss_pred hhhhccCC--CEEEEeCcccH------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 149 GSDAYDQV--DVIGIDEAQFF------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 149 a~aL~~~p--~lLlLDEP~~~------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
|++++.+| ++||||||++. ..+.++|+++++ |.|||+||||++.+. +||++++|.+
T Consensus 409 a~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~-----------~~d~~~~~~~ 472 (517)
T 4ad8_A 409 AVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAA-----------RAHHHYKVEK 472 (517)
T ss_dssp HHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHH-----------HSSEEEEEEC
T ss_pred HHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-----------hCCEEEEEec
Confidence 44688999 99999999664 458888988875 899999999999775 7999999977
No 167
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.28 E-value=1.8e-06 Score=83.88 Aligned_cols=30 Identities=7% Similarity=0.059 Sum_probs=26.1
Q ss_pred eeeeEeeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563 70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ 100 (280)
Q Consensus 70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~ 100 (280)
.+++++.++..+.|.|++||||||++ +.|.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L-~~li 188 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGV-NAMI 188 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHH-HHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHH-HHHH
Confidence 46788899999999999999999999 6554
No 168
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.27 E-value=2.8e-08 Score=87.08 Aligned_cols=49 Identities=27% Similarity=0.312 Sum_probs=43.2
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
..+++++.+.|++..+++++++++++| ++|+||||+|||||+ +++++..
T Consensus 25 ~~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~-~~i~~~~ 73 (254)
T 1ixz_A 25 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLA-RAVAGEA 73 (254)
T ss_dssp HHHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHH-HHHHHHT
T ss_pred HHHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHH-HHHHHHh
Confidence 456788888887778899999999999 899999999999999 9998854
No 169
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.27 E-value=9.3e-07 Score=81.10 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=59.6
Q ss_pred Cce--EEEEEcCCCCcHHHHHHHHHhcchhC--CeeEEEecCCccc-ccc-cceeeeecccccccccccCchHHHHHHhh
Q 023563 77 SGE--IHVIVGPMFAGKTTTLLRRIQAETQK--GRNVAVIKSNKDT-RYG-LDSIVTHDGVKLPCCALTTLSSFRQKFGS 150 (280)
Q Consensus 77 ~Ge--i~~liGpNGsGKSTLl~~~l~gl~~~--g~~i~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~l~~~~~~~a~ 150 (280)
.|. .+.|.||+|+|||||+ +.+.+.... +..+.++...... ... +..+....+...+. .......+.+....
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~-~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~ 118 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTL-RKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPR-RGLSRDEFLALLVE 118 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHH-HHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCS-SCCCHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH-HHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCC-CCCCHHHHHHHHHH
Confidence 446 8999999999999999 877765332 3344444321110 000 00000000000000 00112222222211
Q ss_pred hh--ccCCCEEEEeCcccH-HHHHHHHHHHHh---h---cCCEEEEEEechhHhh
Q 023563 151 DA--YDQVDVIGIDEAQFF-EDLYDFCREAAD---H---DGKTVIVAGLDGDYLR 196 (280)
Q Consensus 151 aL--~~~p~lLlLDEP~~~-~~i~~~l~~l~~---~---~g~tviivtHdl~~~~ 196 (280)
.+ ..+|.+|++||+... .+....|.++.+ . .+.++|++||+.+...
T Consensus 119 ~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 119 HLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 11 246889999999543 233444433332 1 3788999999986554
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.25 E-value=3.9e-07 Score=77.02 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=24.0
Q ss_pred eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
++.+-.++.++|++++|+|||||||||++ ++|++..
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~-~~L~~~~ 53 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIA-HGVADET 53 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHH-HHHHHhh
Confidence 33334466789999999999999999999 8888754
No 171
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.24 E-value=3.6e-08 Score=87.73 Aligned_cols=49 Identities=27% Similarity=0.312 Sum_probs=42.9
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
..+++++.+.|++..+++++++++++| ++|+||||||||||+ +++++..
T Consensus 49 ~~~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~-~~i~~~~ 97 (278)
T 1iy2_A 49 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLA-RAVAGEA 97 (278)
T ss_dssp HHHHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHH-HHHHHHT
T ss_pred HHHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHH-HHHHHHc
Confidence 345778888888878999999999999 899999999999999 9998854
No 172
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.24 E-value=2.1e-08 Score=87.72 Aligned_cols=43 Identities=14% Similarity=0.006 Sum_probs=35.0
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
.|+++|+...|+. +|++.+ ++++|+||||||||||+ ++|+|+.
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll-~~i~g~~ 51 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTM-AAFVTAL 51 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHH-HHHHHHH
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHH-HHHhccc
Confidence 5888888766643 456666 89999999999999999 9999873
No 173
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.23 E-value=4.9e-07 Score=85.62 Aligned_cols=52 Identities=13% Similarity=0.177 Sum_probs=41.6
Q ss_pred cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 154 DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 154 ~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
.+|+++|||||++.+ .+.+.|+++..+ |.++|++||+..... .||+++.+..
T Consensus 354 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~~ii~th~~~~~~-----------~~d~~~~~~~ 411 (430)
T 1w1w_A 354 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP-DLQFIVISLKNTMFE-----------KSDALVGVYR 411 (430)
T ss_dssp SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBT-TBEEEEECSCHHHHT-----------TCSEEEEEEE
T ss_pred CCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcC-CCEEEEEECCHHHHH-----------hCCEEEEEEE
Confidence 589999999996654 477777777554 789999999976653 7999999875
No 174
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.22 E-value=5.2e-07 Score=75.19 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
+|++++|+||||||||||+ +.|.+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~-~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK-NTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 6899999999999999999 8888753
No 175
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.22 E-value=3.8e-08 Score=90.38 Aligned_cols=58 Identities=29% Similarity=0.280 Sum_probs=44.9
Q ss_pred cCceEEeCCeeeeEeeeeEeeCce------EEEEEcCCCCcHHHHHHHHHhcchh---CCeeEEEecC
Q 023563 56 RPPLFSLQNRNLHSEASVSSPSGE------IHVIVGPMFAGKTTTLLRRIQAETQ---KGRNVAVIKS 114 (280)
Q Consensus 56 ~~ls~~y~~~~vl~~isl~i~~Ge------i~~liGpNGsGKSTLl~~~l~gl~~---~g~~i~~~~~ 114 (280)
+.+++.|++..+|++++..+.+++ ++||+||||||||||+ ++|.++.. .+..+..+..
T Consensus 64 rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~-~~L~~ll~~~~~~~~v~~i~~ 130 (321)
T 3tqc_A 64 RLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTS-RVLKALLSRWPDHPNVEVITT 130 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHH-HHHHHHHTTSTTCCCEEEEEG
T ss_pred HHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHH-HHHHHHhcccCCCCeEEEEee
Confidence 344566778888999999998887 9999999999999999 88888643 2344444443
No 176
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.20 E-value=8.9e-07 Score=80.79 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=58.0
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcchhC----CeeEEEecCCccc-ccc-cceeeeecccccccccccCchHHHHHHh
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQK----GRNVAVIKSNKDT-RYG-LDSIVTHDGVKLPCCALTTLSSFRQKFG 149 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~----g~~i~~~~~~~~~-~~~-~~~v~~~~~~~~~~~~~~~l~~~~~~~a 149 (280)
..+..+.|.||+|+|||||+ +.+.+.... +..+.++...... ... ...+....+...+. .............
T Consensus 43 ~~~~~vli~G~~G~GKTtl~-~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~l~ 120 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV-KFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPF-TGLSIAELYRRLV 120 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH-HHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCS-SSCCHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH-HHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHH
Confidence 45778999999999999999 777664321 3344444311100 000 00000000000000 0011222222222
Q ss_pred hhh--ccCCCEEEEeCcccHH-----HHHHHHHHHH---hhcCCEEEEEEechhHhh
Q 023563 150 SDA--YDQVDVIGIDEAQFFE-----DLYDFCREAA---DHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 150 ~aL--~~~p~lLlLDEP~~~~-----~i~~~l~~l~---~~~g~tviivtHdl~~~~ 196 (280)
..+ ...|.+|++||+.... +++..+.++. ...+.++|++||+.+...
T Consensus 121 ~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 121 KAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp HHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 222 2348899999995432 2333333333 233678999999887544
No 177
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=98.19 E-value=1.1e-05 Score=69.22 Aligned_cols=143 Identities=17% Similarity=0.081 Sum_probs=76.5
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHh-cchhCCeeEEEecCCccccc--------cc--------ceeeeecccc-----
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQ-AETQKGRNVAVIKSNKDTRY--------GL--------DSIVTHDGVK----- 132 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~-gl~~~g~~i~~~~~~~~~~~--------~~--------~~v~~~~~~~----- 132 (280)
+++|+++.|.|+.|+|||||++.++. +....+..+.|+.-...... .. +.+...+...
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 106 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGL 106 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC--------
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhhc
Confidence 79999999999999999999955443 33344566666543321100 00 0000000000
Q ss_pred -----cccccccCchHHHHHHhh-hhccCCCEEEEeCcc----------cHHHHHHHHHHHHhhcCCEEEEEEechhHhh
Q 023563 133 -----LPCCALTTLSSFRQKFGS-DAYDQVDVIGIDEAQ----------FFEDLYDFCREAADHDGKTVIVAGLDGDYLR 196 (280)
Q Consensus 133 -----~~~~~~~~l~~~~~~~a~-aL~~~p~lLlLDEP~----------~~~~i~~~l~~l~~~~g~tviivtHdl~~~~ 196 (280)
...........+.+.... .-..+++++++|--+ ...++...|+.++++.|+++++++|-.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~ 186 (251)
T 2zts_A 107 PSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQH 186 (251)
T ss_dssp -----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----
T ss_pred ccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccc
Confidence 000001112222222221 123589999999752 2235667778888888999999998643322
Q ss_pred hccCCccccccccceEEEeec
Q 023563 197 RSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 197 ~~~~~~~~ll~~aD~i~~L~~ 217 (280)
..+.....+-.+||-|+.|..
T Consensus 187 ~~~~~~~~~~~~aD~vi~l~~ 207 (251)
T 2zts_A 187 GKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp CCSSSSSCGGGGCSEEEEEEE
T ss_pred cccccCCceeEEeeEEEEEEE
Confidence 111222233457898888865
No 178
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.19 E-value=1.5e-07 Score=84.27 Aligned_cols=40 Identities=23% Similarity=0.435 Sum_probs=35.1
Q ss_pred EeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 61 SLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 61 ~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
.|+...+++++++++++| ++|+||||||||||+ ++++|..
T Consensus 29 ~~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLa-kala~~~ 68 (274)
T 2x8a_A 29 PVRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLA-KAVANES 68 (274)
T ss_dssp HHHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHH-HHHHHHT
T ss_pred HhhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHH-HHHHHHc
Confidence 345567899999999999 999999999999999 9998853
No 179
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.16 E-value=2.7e-07 Score=86.43 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=34.3
Q ss_pred eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
..+++++|+++++|++++|+||||||||||+ +.+++.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~-~~l~~~ 192 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLA-AALLEL 192 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHH-HHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHH-HHHHhh
Confidence 3589999999999999999999999999999 988884
No 180
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.16 E-value=3e-06 Score=80.72 Aligned_cols=98 Identities=26% Similarity=0.288 Sum_probs=57.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcchh---CCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhcc
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQAETQ---KGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYD 154 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~gl~~---~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~ 154 (280)
+..+.|.||+|+|||||+ +.+++... .+..+.++..... . ......+.......+.. .+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa-~aia~~l~~~~~~~~v~~v~~~~~--------~---~~~~~~~~~~~~~~~~~----~~~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITSEKF--------L---NDLVDSMKEGKLNEFRE----KYRK 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHH-HHHHHHHHHHCCSSCEEEEEHHHH--------H---HHHHHHHHTTCHHHHHH----HHTT
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEeeHHHH--------H---HHHHHHHHcccHHHHHH----HhcC
Confidence 467899999999999999 88877532 1333333321100 0 00000010111112222 1223
Q ss_pred CCCEEEEeCccc-------HHHHHHHHHHHHhhcCCEEEEEEech
Q 023563 155 QVDVIGIDEAQF-------FEDLYDFCREAADHDGKTVIVAGLDG 192 (280)
Q Consensus 155 ~p~lLlLDEP~~-------~~~i~~~l~~l~~~~g~tviivtHdl 192 (280)
+|++|++||+.. +..++..+..+.+. |+.+|++||+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~-~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDS-GKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTT-TCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHC-CCeEEEEECCC
Confidence 899999999932 33567777777664 89999999974
No 181
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.14 E-value=4.1e-06 Score=77.32 Aligned_cols=123 Identities=12% Similarity=0.085 Sum_probs=70.4
Q ss_pred eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeee-cccccccccccCch-HHH
Q 023563 68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTH-DGVKLPCCALTTLS-SFR 145 (280)
Q Consensus 68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~l~-~~~ 145 (280)
|+.+.--+.+|+++.|.|++|+|||||++.+.......|..+.|+.-......-...+... .+.....+....+. .-+
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~ 115 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQW 115 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHH
Confidence 4444445899999999999999999999555444455778888776543211100001000 00000000000110 011
Q ss_pred HHH--hhhhccCCCEEEEeCcc-cHHHHHHHHHHHHhhc-CCEEEEEEe
Q 023563 146 QKF--GSDAYDQVDVIGIDEAQ-FFEDLYDFCREAADHD-GKTVIVAGL 190 (280)
Q Consensus 146 ~~~--a~aL~~~p~lLlLDEP~-~~~~i~~~l~~l~~~~-g~tviivtH 190 (280)
.++ +...+.++++++.|+|. +..++...++++.+++ |..+|+|-|
T Consensus 116 ~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 116 ENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 112 22334577899999994 5567888888888776 788888875
No 182
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.14 E-value=6.1e-06 Score=72.08 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=23.7
Q ss_pred eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++++++.++.| +.|+||+|+||||++ +.+++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la-~~la~~ 68 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLA-KAIAGE 68 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHH-HHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHH-HHHHHH
Confidence 455666667776 889999999999999 888874
No 183
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.13 E-value=1.6e-06 Score=85.68 Aligned_cols=50 Identities=8% Similarity=-0.001 Sum_probs=44.6
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
+..++++.-||...+++++++.+.+|+.++|+||||+|||||+ +.|+++.
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtla-r~ia~~l 84 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLG-QAMAELL 84 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHH-HHHHHTS
T ss_pred ccccccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHH-HHHhccC
Confidence 4556667778888899999999999999999999999999999 9999874
No 184
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.12 E-value=1e-06 Score=77.51 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=24.4
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHh---cc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQ---AE 102 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~---gl 102 (280)
++|++++|+|||||||||++ ++|+ |+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~-k~La~~Lg~ 53 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLC-KALAESLNW 53 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHH-HHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHHHhcCC
Confidence 78999999999999999999 9998 75
No 185
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.12 E-value=1.2e-05 Score=74.92 Aligned_cols=140 Identities=17% Similarity=0.161 Sum_probs=74.4
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccccccee--eeecccccccccccCchHHHHHHhhhh
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSI--VTHDGVKLPCCALTTLSSFRQKFGSDA 152 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~l~~~~~~~a~aL 152 (280)
+++|+++.|.||.|+|||||++.++......|..+.|+............- +....... ........+.... ..+
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i--~~~~~~e~~l~~l-~~l 147 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLV--SQPDNGEQALEIM-ELL 147 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEE--ECCSSHHHHHHHH-HHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHcee--ecCCcHHHHHHHH-HHH
Confidence 789999999999999999999555555555677777776543211100000 00000000 0001222222222 222
Q ss_pred c--cCCCEEEEeCccc------------------H-HHHHHHHHHH---HhhcCCEEEEEEechhHhhhccCCc------
Q 023563 153 Y--DQVDVIGIDEAQF------------------F-EDLYDFCREA---ADHDGKTVIVAGLDGDYLRRSFGSV------ 202 (280)
Q Consensus 153 ~--~~p~lLlLDEP~~------------------~-~~i~~~l~~l---~~~~g~tviivtHdl~~~~~~~~~~------ 202 (280)
+ .++++|++|..+. + ..+.+.++++ +++.+++||++.|-.......|++-
T Consensus 148 ~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg 227 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGG 227 (366)
T ss_dssp HTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC---------------CH
T ss_pred HhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCccccCCc
Confidence 2 5799999999821 1 1244455554 5677999999998655443333321
Q ss_pred cccccccceEEEeec
Q 023563 203 IDIIPLADSVTKLTA 217 (280)
Q Consensus 203 ~~ll~~aD~i~~L~~ 217 (280)
.-|-.+||-++.|..
T Consensus 228 ~al~~~a~~rl~L~r 242 (366)
T 1xp8_A 228 RALKFYASVRLDVRK 242 (366)
T ss_dssp HHHHHHCSEEEEEEE
T ss_pred chhhheeeEEEEEEe
Confidence 113346888888876
No 186
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.10 E-value=1.1e-06 Score=76.14 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=30.1
Q ss_pred eEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEec
Q 023563 73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIK 113 (280)
Q Consensus 73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~ 113 (280)
.+.++|++++|.|||||||||++ ++|.++ +..+.+..
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~-~~L~~~---~g~v~~~~ 51 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYL-NHFEKY---KNDICLLT 51 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHH-HTTGGG---TTTEEEEC
T ss_pred CCCCCceEEEEECCCCCCHHHHH-HHHHhc---cCCeEEEe
Confidence 45689999999999999999999 999987 33444443
No 187
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.09 E-value=1.5e-06 Score=74.15 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=24.3
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
++|++++|+||||||||||+ +.|.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~-~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVR-EAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHH-HHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHH-HHHHhhC
Confidence 58999999999999999999 8887754
No 188
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.09 E-value=5.4e-06 Score=74.67 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=25.2
Q ss_pred eEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
+.++++..+.|.||+|+|||||+ +.+++.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la-~ala~~ 72 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLA-KAIANE 72 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHH-HHHHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHH-HHHHHH
Confidence 44678889999999999999999 888774
No 189
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.07 E-value=1.3e-07 Score=87.19 Aligned_cols=63 Identities=24% Similarity=0.193 Sum_probs=51.8
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCC
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSN 115 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~ 115 (280)
+++.+++.+.|+.+.+++++++++.+|.+++|+|++|+|||||+ +.+++.. ..+.++..+..+
T Consensus 30 ~ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~-~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 30 LVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFL-EAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp HHHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHH-HHHHHHHHHTTCCEEEEEEC
T ss_pred HhhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEEEEeec
Confidence 57788888888888899999999999999999999999999999 7777753 356666655433
No 190
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.07 E-value=8.1e-06 Score=74.24 Aligned_cols=124 Identities=10% Similarity=0.109 Sum_probs=70.4
Q ss_pred eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeee-cc-----ccccc--cc
Q 023563 66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTH-DG-----VKLPC--CA 137 (280)
Q Consensus 66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~-~~-----~~~~~--~~ 137 (280)
..|+.+.--+++|+++.|.|++|+|||||++.+.......|..+.++.-......-...+... .+ ..... +.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~ 135 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFA 135 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHTTCCHHHHHSCHHHHC
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCCC
Confidence 345555556899999999999999999999554444444566777765432211000000000 00 00000 11
Q ss_pred ccCchHHHHHHhhhhccCCCEEEEeCc-ccHHHHHHHHHHHHhhcCCE--EEEEEec
Q 023563 138 LTTLSSFRQKFGSDAYDQVDVIGIDEA-QFFEDLYDFCREAADHDGKT--VIVAGLD 191 (280)
Q Consensus 138 ~~~l~~~~~~~a~aL~~~p~lLlLDEP-~~~~~i~~~l~~l~~~~g~t--viivtHd 191 (280)
..+...+.. +...+.++++++.|+| .+..++.+.++++.++.|.. +|++-|-
T Consensus 136 ~~~~~~l~~--a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 136 SEDWGKLSM--AIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp SSCHHHHHH--HHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred HHHHHHHHH--HHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 111111111 1223446788888888 45667888888887766777 8888763
No 191
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.06 E-value=2e-05 Score=66.96 Aligned_cols=89 Identities=19% Similarity=0.297 Sum_probs=53.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ 155 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~ 155 (280)
.+..+.|.||+|+|||||+ +.+.... ..+..+.++...... . .+.... ..+.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la-~~l~~~~~~~~~~~~~~~~~~~~---------------~-----~~~~~~-----~~~~~ 104 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI-HAACARANELERRSFYIPLGIHA---------------S-----ISTALL-----EGLEQ 104 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH-HHHHHHHHHTTCCEEEEEGGGGG---------------G-----SCGGGG-----TTGGG
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEEEHHHHH---------------H-----HHHHHH-----HhccC
Confidence 5778999999999999999 7776532 233344333221100 0 000000 11257
Q ss_pred CCEEEEeCccc-------HHHHHHHHHHHHhhcCCE-EEEEEech
Q 023563 156 VDVIGIDEAQF-------FEDLYDFCREAADHDGKT-VIVAGLDG 192 (280)
Q Consensus 156 p~lLlLDEP~~-------~~~i~~~l~~l~~~~g~t-viivtHdl 192 (280)
+.+|++||... ...+++.+...... +.. +|++++..
T Consensus 105 ~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~~~~~~ 148 (242)
T 3bos_A 105 FDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQ-KRGSLIVSASAS 148 (242)
T ss_dssp SSEEEEETGGGGTTCHHHHHHHHHHHHHHHHH-CSCEEEEEESSC
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHc-CCCeEEEEcCCC
Confidence 89999999832 33467777776665 655 88888743
No 192
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.01 E-value=8.1e-07 Score=86.19 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=29.2
Q ss_pred eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.+++++|++.+| +.+|+|+||||||||+ .+|..
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~ll-eAl~~ 82 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIV-DALGL 82 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHT-HHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHH-HHHHH
Confidence 567899999999 9999999999999999 66644
No 193
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.00 E-value=2.8e-06 Score=74.02 Aligned_cols=25 Identities=36% Similarity=0.321 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh---cc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQ---AE 102 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~---gl 102 (280)
++++++|+||||||||||+ ++|+ |+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~-k~La~~lg~ 53 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVC-QRIAQNFGL 53 (246)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHhCC
Confidence 4789999999999999999 9998 76
No 194
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.00 E-value=1.1e-06 Score=85.09 Aligned_cols=49 Identities=27% Similarity=0.312 Sum_probs=41.4
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
+.+++++...|.+..+++++++++++| +.|+||||+|||||+ +.+++..
T Consensus 40 k~~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLa-raIa~~~ 88 (499)
T 2dhr_A 40 KEELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLA-RAVAGEA 88 (499)
T ss_dssp HHHHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHH-HHHHHHT
T ss_pred HHHHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHH-HHHHHHh
Confidence 355667766676667899999999999 899999999999999 9998854
No 195
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.00 E-value=1.5e-06 Score=78.69 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=27.1
Q ss_pred eEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
|++.+|++++|+||||||||||+ ++|.|+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll-~~l~g~~ 193 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLL-NAINPGL 193 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHH-HHHSTTC
T ss_pred HHHhcCCeEEEECCCCCcHHHHH-HHhcccc
Confidence 55678999999999999999999 9999973
No 196
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.99 E-value=2.9e-06 Score=69.64 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=23.4
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.+|++++|+|||||||||++ +.|.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~-~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVA-SEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHH-HHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHH-HHHHHh
Confidence 56999999999999999999 888764
No 197
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.96 E-value=3.5e-05 Score=73.23 Aligned_cols=149 Identities=17% Similarity=0.072 Sum_probs=82.9
Q ss_pred eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCccc-----c-----ccc--ceeee----ec-
Q 023563 68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDT-----R-----YGL--DSIVT----HD- 129 (280)
Q Consensus 68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~-----~-----~~~--~~v~~----~~- 129 (280)
|+.+.--+++|+++.|.|++|+|||||++.+...... .|..+.++.-.... | .++ ..+.. ..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~ 269 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRD 269 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHH
Confidence 4444445899999999999999999999444444433 46677776543211 0 000 00000 00
Q ss_pred --------------ccccccccccCchHHHHHHhhhhc--cCCCEEEEeCcc----c--H----------HHHHHHHHHH
Q 023563 130 --------------GVKLPCCALTTLSSFRQKFGSDAY--DQVDVIGIDEAQ----F--F----------EDLYDFCREA 177 (280)
Q Consensus 130 --------------~~~~~~~~~~~l~~~~~~~a~aL~--~~p~lLlLDEP~----~--~----------~~i~~~l~~l 177 (280)
...........+.++..+. +.+. .+++++++|..+ . . ..+...|+.+
T Consensus 270 ~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~-~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~l 348 (444)
T 2q6t_A 270 FSRLVDVASRLSEAPIYIDDTPDLTLMEVRARA-RRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKAL 348 (444)
T ss_dssp HHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHH-HHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHH-HHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 0000000001223332222 2222 489999999982 1 1 1366777888
Q ss_pred HhhcCCEEEEEEechhHhhhcc---------CCccccccccceEEEeec
Q 023563 178 ADHDGKTVIVAGLDGDYLRRSF---------GSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 178 ~~~~g~tviivtHdl~~~~~~~---------~~~~~ll~~aD~i~~L~~ 217 (280)
+++.|++||+++|--....... .+...|-..||.|++|..
T Consensus 349 Ake~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 349 ARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp HHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred HHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 8888999999999433221100 011234568999999987
No 198
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.96 E-value=1e-06 Score=80.34 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=26.7
Q ss_pred eEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
+++.+|++++|+||||||||||+ +.|.|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLl-n~L~g~ 196 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLL-NAISPE 196 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHH-HHHCC-
T ss_pred HhhcCCCEEEEECCCCCCHHHHH-HHhccc
Confidence 77889999999999999999999 999986
No 199
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.95 E-value=4.4e-06 Score=67.86 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=22.3
Q ss_pred eeeEeeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563 71 ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ 100 (280)
Q Consensus 71 isl~i~~Gei~~liGpNGsGKSTLl~~~l~ 100 (280)
.++++.+| +.+|+|||||||||++ ..|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil-~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLL-DAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHH-HHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHH-HHHH
Confidence 34556655 9999999999999999 6554
No 200
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.95 E-value=5.6e-06 Score=84.60 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=26.6
Q ss_pred eEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
|.+++|+.+.|+||+|||||||+ +++++.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLa-rala~~ 261 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIA-RAVANE 261 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHH-HHHHHT
T ss_pred cCCCCCCeEEEECcCCCCHHHHH-HHHHHH
Confidence 46889999999999999999999 999885
No 201
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.95 E-value=4e-05 Score=68.07 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
++..+.|.||+|+||||++ +.+++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la-~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLA-RAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHH-HHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH-HHHHHH
Confidence 4567899999999999999 888763
No 202
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.95 E-value=1.9e-06 Score=75.20 Aligned_cols=149 Identities=14% Similarity=0.016 Sum_probs=71.2
Q ss_pred eCceE-EEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecc------ccc--ccccccCchHHHH
Q 023563 76 PSGEI-HVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDG------VKL--PCCALTTLSSFRQ 146 (280)
Q Consensus 76 ~~Gei-~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~------~~~--~~~~~~~l~~~~~ 146 (280)
.+|+. +.+.|+-|+||||++.++...+...|.++.+..-+...+......+.... ... .......+..
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~--- 79 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDA--- 79 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHH---
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHH---
Confidence 35664 77899999999999745555556667776544332211110000000000 000 0001112222
Q ss_pred HHhhhhccCCCEEEEeCcccH-------HHHHHHHHHHHhhcCCEEEEEEe-----chhHhhhccCCccccccccceEEE
Q 023563 147 KFGSDAYDQVDVIGIDEAQFF-------EDLYDFCREAADHDGKTVIVAGL-----DGDYLRRSFGSVIDIIPLADSVTK 214 (280)
Q Consensus 147 ~~a~aL~~~p~lLlLDEP~~~-------~~i~~~l~~l~~~~g~tviivtH-----dl~~~~~~~~~~~~ll~~aD~i~~ 214 (280)
++...|+++|+||+-.. ...++.+..+... |..++.++| .++.+...+-+..---.+-|+++-
T Consensus 80 ----~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~s-gidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~ 154 (228)
T 2r8r_A 80 ----LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAA-GIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQ 154 (228)
T ss_dssp ----HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHT-TCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHH
T ss_pred ----HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcC-CCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHh
Confidence 12358999999998321 1133334444444 889998888 443332111111111123355554
Q ss_pred eec-eeccccCcceeeeee
Q 023563 215 LTA-RCEFCGKRAFFTLRK 232 (280)
Q Consensus 215 L~~-~i~~~g~~~~~~~~~ 232 (280)
..+ ..+.+-+|+++..|.
T Consensus 155 ~a~~v~lvD~~p~~l~~rl 173 (228)
T 2r8r_A 155 EAFDLVLIDLPPRELLERL 173 (228)
T ss_dssp TCSEEEEBCCCHHHHHHHH
T ss_pred hCCeEEEecCCHHHHHHHH
Confidence 444 333345666666443
No 203
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.93 E-value=2.1e-06 Score=80.63 Aligned_cols=50 Identities=24% Similarity=0.154 Sum_probs=44.8
Q ss_pred cEEEcCceEEeCC-eeeeE--------------eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 52 MVSPRPPLFSLQN-RNLHS--------------EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 52 ~l~~~~ls~~y~~-~~vl~--------------~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
-+.++|+++.|.. +..|+ |+++.|.+|+.++|+||+|+|||||+ +.|.+.
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl-~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL-QNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH-HHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHH-HHHHHH
Confidence 4789999999964 67888 99999999999999999999999999 777664
No 204
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.93 E-value=8.4e-06 Score=73.72 Aligned_cols=97 Identities=22% Similarity=0.266 Sum_probs=54.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcchh-CCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAETQ-KGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ 155 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~-~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~ 155 (280)
.+..+.|.||+|+|||||+ +.+++... .+..+.++..... .. .............+... ..+
T Consensus 36 ~~~~lll~G~~GtGKT~la-~~i~~~~~~~~~~~~~i~~~~~--------~~---~~~~~~~~~~~~~~~~~-----~~~ 98 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLL-QAAGNEAKKRGYRVIYSSADDF--------AQ---AMVEHLKKGTINEFRNM-----YKS 98 (324)
T ss_dssp SCSSEEEECSSSSSHHHHH-HHHHHHHHHTTCCEEEEEHHHH--------HH---HHHHHHHHTCHHHHHHH-----HHT
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHHHCCCEEEEEEHHHH--------HH---HHHHHHHcCcHHHHHHH-----hcC
Confidence 3467889999999999999 88876432 2344443321100 00 00000000111222221 246
Q ss_pred CCEEEEeCccc-------HHHHHHHHHHHHhhcCCEEEEEEec
Q 023563 156 VDVIGIDEAQF-------FEDLYDFCREAADHDGKTVIVAGLD 191 (280)
Q Consensus 156 p~lLlLDEP~~-------~~~i~~~l~~l~~~~g~tviivtHd 191 (280)
+++|++||+.. +..++..+..+.+. |..+|++++.
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~-~~~iii~~~~ 140 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL-EKQIILASDR 140 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 99999999932 23466677666654 7777777764
No 205
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.92 E-value=2e-05 Score=71.46 Aligned_cols=142 Identities=15% Similarity=0.066 Sum_probs=72.4
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcc--h----------hCC----eeEEEecCCccc-ccccceeeee--------
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAE--T----------QKG----RNVAVIKSNKDT-RYGLDSIVTH-------- 128 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl--~----------~~g----~~i~~~~~~~~~-~~~~~~v~~~-------- 128 (280)
-+++|+++.|.||+|+|||||++.++... . ..| ..+.|+.-.... ...+......
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 47899999999999999999994443321 1 123 567777544321 0000000000
Q ss_pred -cccccccccccCch---HHHHHHhhhhc--cCCCEEEEeCcccH------------------HHHHHHHHHHHhhcCCE
Q 023563 129 -DGVKLPCCALTTLS---SFRQKFGSDAY--DQVDVIGIDEAQFF------------------EDLYDFCREAADHDGKT 184 (280)
Q Consensus 129 -~~~~~~~~~~~~l~---~~~~~~a~aL~--~~p~lLlLDEP~~~------------------~~i~~~l~~l~~~~g~t 184 (280)
++... ....+.. .+.......+. .+++++++|.-+.. .+++..|++++++.|.+
T Consensus 174 ~~~l~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~ 251 (322)
T 2i1q_A 174 LDNTFV--ARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCV 251 (322)
T ss_dssp HHTEEE--EECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred hcCEEE--EeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 00000 0011111 12222211121 47999999998321 12445566777778999
Q ss_pred EEEEEechhHhhhccCCc------cccccccceEEEeec
Q 023563 185 VIVAGLDGDYLRRSFGSV------IDIIPLADSVTKLTA 217 (280)
Q Consensus 185 viivtHdl~~~~~~~~~~------~~ll~~aD~i~~L~~ 217 (280)
||++.|-.......|++- .-|-..+|.++.|+.
T Consensus 252 vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 252 VLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp EEEEECEECC-------CCEESSHHHHHHHCSEEEEEEE
T ss_pred EEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEe
Confidence 999888543332222110 012345788888775
No 206
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.90 E-value=1.3e-05 Score=81.45 Aligned_cols=123 Identities=20% Similarity=0.203 Sum_probs=63.7
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchh----CCeeEEEecCCcccc------------cccceeeee----cccccc
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQ----KGRNVAVIKSNKDTR------------YGLDSIVTH----DGVKLP 134 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~----~g~~i~~~~~~~~~~------------~~~~~v~~~----~~~~~~ 134 (280)
+..|+.+.|+||+||||||++ .++.+... .|..+.++.+..... ..++..+.. ......
T Consensus 106 l~~~~~vii~gpTGSGKTtll-p~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~ 184 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQI-PQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSN 184 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHH-HHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCT
T ss_pred HhCCCeEEEECCCCCCHHHHH-HHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCC
Confidence 567899999999999999987 55543211 145566555432210 001111110 000000
Q ss_pred c--ccccCchHHHH-HHhhhhccCCCEEEEeCccc-HHH---HHHHHHHHHhh--cCCEEEE-EEechhHhhhc
Q 023563 135 C--CALTTLSSFRQ-KFGSDAYDQVDVIGIDEAQF-FED---LYDFCREAADH--DGKTVIV-AGLDGDYLRRS 198 (280)
Q Consensus 135 ~--~~~~~l~~~~~-~~a~aL~~~p~lLlLDEP~~-~~~---i~~~l~~l~~~--~g~tvii-vtHdl~~~~~~ 198 (280)
. ....--..+.. ..+..++.++++||+|||.. ..+ ++..++.+... ...+|++ +||+.+.+.+.
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~ 258 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRY 258 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHH
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHH
Confidence 0 00000111111 11345788999999999964 222 34445554432 2456666 49998877663
No 207
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.90 E-value=1.2e-05 Score=74.76 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=41.7
Q ss_pred hhccC-CCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 151 DAYDQ-VDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 151 aL~~~-p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
+++.+ |++||||||++.. .+.+.|.++.+ +.+||++||+.+. .. +||++++|+.
T Consensus 300 ~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~~~-~~----------~~d~~~~l~k 360 (371)
T 3auy_A 300 ALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHREL-ED----------VADVIINVKK 360 (371)
T ss_dssp HHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCGGG-GG----------GCSEEEEEEE
T ss_pred HHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChHHH-Hh----------hCCEEEEEEe
Confidence 45678 9999999997654 46666666532 5689999999874 33 8999999975
No 208
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.89 E-value=4.4e-06 Score=68.21 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.|++++|+|||||||||++ +.|++.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~-~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIG-RQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHH-HHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHH
Confidence 4688999999999999999 888874
No 209
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.89 E-value=0.00014 Score=58.81 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++|+|++|+|||||+ +.+.|.
T Consensus 5 ~v~lvG~~gvGKStL~-~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIF-NALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHH-HHHHCC
T ss_pred EEEEECCCCCCHHHHH-HHHhCC
Confidence 6899999999999999 778774
No 210
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.89 E-value=5.5e-06 Score=77.01 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=29.6
Q ss_pred eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
-++++++. .+|++++|+||||||||||+ ++|.|+.
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLl-n~L~g~~ 239 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLL-NALLGLQ 239 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHH-HHHHCCS
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHH-HHHhccc
Confidence 35666664 47999999999999999999 9999864
No 211
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.87 E-value=2.2e-05 Score=65.57 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=42.9
Q ss_pred hhhhc----cCCCEEEEeCcccHH------HHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccceEEEeec
Q 023563 149 GSDAY----DQVDVIGIDEAQFFE------DLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 149 a~aL~----~~p~lLlLDEP~~~~------~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~i~~L~~ 217 (280)
|++++ ..|+++|||||++.+ .+.++|+++.+ +.++|++||+..... +||+++.+..
T Consensus 76 a~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~~~-----------~ad~i~~v~~ 141 (173)
T 3kta_B 76 AFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVMMA-----------NADKIIGVSM 141 (173)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHHHT-----------TCSEEEEEEE
T ss_pred HHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHHHH-----------hCCEEEEEEe
Confidence 56665 457999999996654 47788887764 578999999987653 8999997753
No 212
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.86 E-value=6.3e-06 Score=70.41 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=24.0
Q ss_pred eEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
+...+|++++|+||||||||||+ +.|.+.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~-~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIK-NALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHH-HHHHhh
Confidence 44568999999999999999999 777764
No 213
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.86 E-value=6.9e-06 Score=69.40 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=31.3
Q ss_pred eeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCC
Q 023563 71 ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSN 115 (280)
Q Consensus 71 isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~ 115 (280)
+--++++|.+++|+|++||||||++ +.|.+... .+.++.++
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~-~~L~~~~~---~~~~i~~D 54 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLA-KNLQKHLP---NCSVISQD 54 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHH-HHHHTTST---TEEEEEGG
T ss_pred ccccCCCCeEEEEECCCCCCHHHHH-HHHHHhcC---CcEEEeCC
Confidence 3356889999999999999999999 88887431 24455544
No 214
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.85 E-value=7.2e-06 Score=69.36 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=30.3
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEec
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVIK 113 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~~ 113 (280)
..++|++++|+|||||||||++ +.|.++. ..+..+.+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~-~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLA-NQLSQTLREQGISVCVFH 57 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHH-HHHHHHHHHTTCCEEEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHH-HHHHHHHhhcCCeEEEec
Confidence 3678999999999999999999 8888754 2455555443
No 215
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.82 E-value=4.7e-05 Score=82.92 Aligned_cols=140 Identities=21% Similarity=0.162 Sum_probs=80.0
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccc---eeeeecccccccccccCchHHHHHHhhh
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLD---SIVTHDGVKLPCCALTTLSSFRQKFGSD 151 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~l~~~~~~~a~a 151 (280)
+++|+++.|.||+|+|||||++.+.......|..+.|+.-......-.. .+ ....+.. .....+.++..+.-+.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGv-d~~~L~i--~~~~~leei~~~l~~l 805 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGV-DIDNLLC--SQPDTGEQALEICDAL 805 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTC-CGGGCEE--ECCSSHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCC-ChhheEE--ecCCcHHHHHHHHHHH
Confidence 8999999999999999999994444444456667777754332211000 00 0001100 0111233333332111
Q ss_pred h-ccCCCEEEEeCccc------------------H-HHHHHHHHH---HHhhcCCEEEEEEechhHhhhccCC------c
Q 023563 152 A-YDQVDVIGIDEAQF------------------F-EDLYDFCRE---AADHDGKTVIVAGLDGDYLRRSFGS------V 202 (280)
Q Consensus 152 L-~~~p~lLlLDEP~~------------------~-~~i~~~l~~---l~~~~g~tviivtHdl~~~~~~~~~------~ 202 (280)
. -.+|+++++|+.+. + .++.+.+++ ++++.|++||+++|-.......||+ .
T Consensus 806 v~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs 885 (1706)
T 3cmw_A 806 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGG 885 (1706)
T ss_dssp HHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSC
T ss_pred HHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCccccCCc
Confidence 1 25899999999831 1 124444444 4667799999999965554444542 1
Q ss_pred cccccccceEEEeec
Q 023563 203 IDIIPLADSVTKLTA 217 (280)
Q Consensus 203 ~~ll~~aD~i~~L~~ 217 (280)
.-|-..||-++.+..
T Consensus 886 ~~Leq~ADvvl~L~R 900 (1706)
T 3cmw_A 886 NALKFYASVRLDIRR 900 (1706)
T ss_dssp SHHHHHEEEEEEEEE
T ss_pred chhhheeeEEEEEEe
Confidence 223456888888865
No 216
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.82 E-value=1.6e-05 Score=75.78 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=29.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc-chhCCeeEEEecCC
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA-ETQKGRNVAVIKSN 115 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g-l~~~g~~i~~~~~~ 115 (280)
++.+++++||+||||||++ ..|+. +...|.++.++..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~-~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTA-GKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHH-HHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEEecC
Confidence 5799999999999999999 55554 45567777766543
No 217
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.81 E-value=5.3e-06 Score=75.12 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=24.6
Q ss_pred eEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
+++.+|++++|+||||||||||+ ++|. +
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLl-n~l~-~ 187 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSIL-SRLT-G 187 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHH-HHHH-S
T ss_pred HhhccCcEEEEECCCCCCHHHHH-HHHH-H
Confidence 35568999999999999999999 8887 5
No 218
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.81 E-value=5.9e-05 Score=66.51 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=21.9
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+..+.-+.|.||.|+|||||+ +.++.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la-~~la~ 73 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLA-KAVAT 73 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHH-HHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHH-HHHHH
Confidence 345667899999999999999 88865
No 219
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.80 E-value=7.7e-05 Score=74.59 Aligned_cols=120 Identities=13% Similarity=0.015 Sum_probs=61.2
Q ss_pred eeEeeCceEEEEEcCCCCcHHHHHHHHHhcchh----CC-----eeEEEecCCcccccccceeee-----eccccccccc
Q 023563 72 SVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ----KG-----RNVAVIKSNKDTRYGLDSIVT-----HDGVKLPCCA 137 (280)
Q Consensus 72 sl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~----~g-----~~i~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~ 137 (280)
|+++++|..++|+|++|+|||||+ +.+.+... .| ..+....+ ...+.++....+ ........+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl-~~L~~~~~~~~~~G~V~~g~~~~d~~~-~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLT-EALLYKTGAKERRGRVEEGTTTTDYTP-EAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHH-HHHHHHTTSSSSCCCGGGTCCSSCCSH-HHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHH-HHHHHhcCCCCccceecCCcccccCCH-HHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 467889999999999999999999 77764321 11 11100000 000112211111 1111111222
Q ss_pred ccCchHHHHHHhhh-hccCCCEEEEeCcccHH--HHHHHHHHHHhhcCCEEEEEEechhHh
Q 023563 138 LTTLSSFRQKFGSD-AYDQVDVIGIDEAQFFE--DLYDFCREAADHDGKTVIVAGLDGDYL 195 (280)
Q Consensus 138 ~~~l~~~~~~~a~a-L~~~p~lLlLDEP~~~~--~i~~~l~~l~~~~g~tviivtHdl~~~ 195 (280)
..+..++.....++ -..+.-++++| |+... ...+.++.+.+ .+..+|++.|.+|..
T Consensus 81 TpG~~~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~~~-~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 81 APGYGDFVGEIRGALEAADAALVAVS-AEAGVQVGTERAWTVAER-LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CCCSGGGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHHHHH-TTCCEEEEEECGGGC
T ss_pred CCCccchHHHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHHHHH-ccCCEEEEecCCchh
Confidence 22333333322222 24688899999 64321 22344444444 489999999999865
No 220
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.74 E-value=7.7e-05 Score=68.33 Aligned_cols=119 Identities=12% Similarity=0.075 Sum_probs=62.2
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhC--CeeEEEecCCccccc----ccceeeeecccccccccccCchHH-HHH
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQK--GRNVAVIKSNKDTRY----GLDSIVTHDGVKLPCCALTTLSSF-RQK 147 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~--g~~i~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~l~~~-~~~ 147 (280)
+++| ++-|.||.|+|||||++.++...... |..+.|+........ .++. ..++... ....+.+.. ..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGv--d~d~llv--~~~~~~E~~~l~- 99 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGV--DPERVIH--TPVQSLEQLRID- 99 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTC--CGGGEEE--EECSBHHHHHHH-
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCC--CHHHeEE--EcCCCHHHHHHH-
Confidence 7889 89999999999999986666655443 667777765432211 0110 0011110 011122222 11
Q ss_pred Hhhhh----ccCCCEEEEeCccc--------------------HH-HHHHHH---HHHHhhcCCEEEEEEechhHhhhcc
Q 023563 148 FGSDA----YDQVDVIGIDEAQF--------------------FE-DLYDFC---REAADHDGKTVIVAGLDGDYLRRSF 199 (280)
Q Consensus 148 ~a~aL----~~~p~lLlLDEP~~--------------------~~-~i~~~l---~~l~~~~g~tviivtHdl~~~~~~~ 199 (280)
....+ -.+|+++++|--++ +. .+-+.| ..++++.|+++|++.|-.. ...+|
T Consensus 100 i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k-~G~~f 178 (333)
T 3io5_A 100 MVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE-TQEMF 178 (333)
T ss_dssp HHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC--------
T ss_pred HHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee-cCccc
Confidence 11122 24799999998721 11 122333 3456677999999999877 55555
Q ss_pred C
Q 023563 200 G 200 (280)
Q Consensus 200 ~ 200 (280)
+
T Consensus 179 g 179 (333)
T 3io5_A 179 S 179 (333)
T ss_dssp -
T ss_pred C
Confidence 3
No 221
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.71 E-value=3.5e-05 Score=72.78 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=35.2
Q ss_pred EEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 53 VSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 53 l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
|+++|+ ++|++.. .+++.+|++++|+||||||||||+ .+|.++
T Consensus 7 l~~~~~-~~~~~~~-----~~~~~~~~~~~i~G~nG~GKstll-~ai~~~ 49 (430)
T 1w1w_A 7 LELSNF-KSYRGVT-----KVGFGESNFTSIIGPNGSGKSNMM-DAISFV 49 (430)
T ss_dssp EEEESC-SSCCSEE-----EEECTTCSEEEEECSTTSSHHHHH-HHHHHH
T ss_pred EEEeCE-EEECCce-----eEEecCCCEEEEECCCCCCHHHHH-HHHHhh
Confidence 788898 7887642 255778999999999999999999 777664
No 222
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.71 E-value=0.00011 Score=67.69 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
..-.++|+|++|+|||||+ +.+.+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLi-n~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLL-KALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHH-HHHCSS
T ss_pred CCCEEEEECCCCCCHHHHH-HHHhCC
Confidence 4458999999999999999 888774
No 223
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.71 E-value=9.1e-05 Score=80.68 Aligned_cols=146 Identities=21% Similarity=0.142 Sum_probs=83.7
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccccccee--eeecccccccccccCchHHHHHHhhhh
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSI--VTHDGVKLPCCALTTLSSFRQKFGSDA 152 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~l~~~~~~~a~aL 152 (280)
+++|+++.|.||.|+|||||++.++......|..+.|+.-..........- +..+.... ........+.... +.+
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~i--~~~~~~e~~l~~l-~~l 456 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLC--SQPDTGEQALEIC-DAL 456 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEE--ECCSSHHHHHHHH-HHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHcCCCHHHeEE--cCCCCHHHHHHHH-HHH
Confidence 889999999999999999999666655555677788876543221100000 00000000 0111222332222 222
Q ss_pred --ccCCCEEEEeCccc------------------H-HHHHHHHHHH---HhhcCCEEEEEEechhHhhhccCC------c
Q 023563 153 --YDQVDVIGIDEAQF------------------F-EDLYDFCREA---ADHDGKTVIVAGLDGDYLRRSFGS------V 202 (280)
Q Consensus 153 --~~~p~lLlLDEP~~------------------~-~~i~~~l~~l---~~~~g~tviivtHdl~~~~~~~~~------~ 202 (280)
-.+|+++++|..+. + ..+.+.++++ +++.|++||+++|-...+...|++ -
T Consensus 457 v~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg 536 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGG 536 (1706)
T ss_dssp HHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSC
T ss_pred HHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCC
Confidence 25899999999821 1 1233444444 566799999999976554443432 1
Q ss_pred cccccccceEEEeec-eecccc
Q 023563 203 IDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 203 ~~ll~~aD~i~~L~~-~i~~~g 223 (280)
.-|-.+||-++.+.. .....|
T Consensus 537 ~ale~~ADv~L~L~R~~~~~~g 558 (1706)
T 3cmw_A 537 NALKFYASVRLDIRRIGAVKEG 558 (1706)
T ss_dssp SHHHHHEEEEEEEEEEEEEEET
T ss_pred cceeeeCCEEEEEEeccccccC
Confidence 223457898888876 544444
No 224
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.70 E-value=1.9e-05 Score=68.55 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=24.1
Q ss_pred eeEeeeeEee---CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 67 LHSEASVSSP---SGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 67 vl~~isl~i~---~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
-|.++||++. +|.+++|.||+||||||++ +.|...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~-~~l~~~ 49 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVI-NEVYHR 49 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHH-HHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHH-HHHHHH
Confidence 3667777776 9999999999999999999 777664
No 225
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.67 E-value=1.9e-05 Score=65.74 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=25.0
Q ss_pred eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
++|++.++|.+++|+|++||||||+. +.|+.
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~-~~La~ 32 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMA-EMIAA 32 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHH-HHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHH-HHHHH
Confidence 57899999999999999999999999 77754
No 226
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.66 E-value=8.8e-05 Score=64.03 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.8
Q ss_pred EeeCceEEEEEcCCCCcHHHHH
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTL 95 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl 95 (280)
.+.+|+.+++.||+||||||++
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhH
Confidence 3567999999999999999988
No 227
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.65 E-value=2.5e-05 Score=66.46 Aligned_cols=29 Identities=31% Similarity=0.467 Sum_probs=22.6
Q ss_pred eeeeEeeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563 70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQ 100 (280)
Q Consensus 70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~ 100 (280)
+.++.+.+| +.+|+|||||||||++ .+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil-~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLL-DAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHH-HHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHH-HHHH
Confidence 345566664 9999999999999999 5553
No 228
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.63 E-value=1.1e-05 Score=67.12 Aligned_cols=25 Identities=36% Similarity=0.371 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQAETQ 104 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~gl~~ 104 (280)
++++|+||||||||||+ ++|.++..
T Consensus 3 ~~v~IvG~SGsGKSTL~-~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLI-TRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHH-HHHHHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHhh
Confidence 58999999999999999 88888643
No 229
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.62 E-value=8.2e-05 Score=62.26 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~gl 102 (280)
..+.|.||+|+|||||+ +.++..
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHH
Confidence 67889999999999999 777764
No 230
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.62 E-value=1.6e-05 Score=77.88 Aligned_cols=30 Identities=27% Similarity=0.214 Sum_probs=27.1
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQ 104 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~ 104 (280)
.+++|++++|+|+||||||||+ ++|++...
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLa-r~La~~L~ 394 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLA-RALAARLM 394 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHH-HHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHH-HHHHHhhc
Confidence 5789999999999999999999 99998643
No 231
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.61 E-value=3e-06 Score=77.36 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=41.9
Q ss_pred EEcCceEEeCCeeeeEeeeeEeeCceE--EEEEcCCCCcHHHHHHHHHhcch
Q 023563 54 SPRPPLFSLQNRNLHSEASVSSPSGEI--HVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 54 ~~~~ls~~y~~~~vl~~isl~i~~Gei--~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
+.++++..||...+++.++..+..|++ +.|.||+|+||||++ +.+++..
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla-~~la~~l 70 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTI-VALAREI 70 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHH-HHHHHHH
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHH-HHHHHHH
Confidence 445566677888899999999999998 999999999999999 8888753
No 232
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.61 E-value=3.1e-05 Score=63.81 Aligned_cols=26 Identities=27% Similarity=0.142 Sum_probs=23.0
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.+|++++|+|++||||||++ +.|.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~-~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVS-MALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHHHH
Confidence 47999999999999999999 888774
No 233
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.60 E-value=1e-05 Score=73.16 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=44.1
Q ss_pred EEcCceEEeCCeeeeEe-eeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCC
Q 023563 54 SPRPPLFSLQNRNLHSE-ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSN 115 (280)
Q Consensus 54 ~~~~ls~~y~~~~vl~~-isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~ 115 (280)
-.+++.+.|++.. ++ ++++.+ |++++++|+||+||||++ ..+++. ...|.++.++..+
T Consensus 76 ~~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~-~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 76 VYDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTA-GKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp HHHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHH-HHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHH-HHHHHHHHHCCCeEEEEecC
Confidence 3566777777643 56 888877 999999999999999999 666664 4467777776554
No 234
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.60 E-value=0.00026 Score=61.20 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=20.6
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
....-+.|.||.|+||||++ +.++.
T Consensus 37 ~~~~~vll~G~~GtGKT~la-~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLA-KAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHH-HHHHH
T ss_pred CCCceEEEECCCCCCHHHHH-HHHHH
Confidence 34445789999999999999 88776
No 235
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.59 E-value=3e-05 Score=65.23 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
+++|+|||||||||+. +.|+++
T Consensus 4 ~i~l~G~~GsGKST~~-~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA-NLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHH-HHHHTT
T ss_pred EEEEECCCCCCHHHHH-HHHHHC
Confidence 6899999999999999 988873
No 236
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.59 E-value=0.00018 Score=79.36 Aligned_cols=144 Identities=21% Similarity=0.152 Sum_probs=83.4
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccc----cceeeeecccccccccccCchHHHHHHhh
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYG----LDSIVTHDGVKLPCCALTTLSSFRQKFGS 150 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~l~~~~~~~a~ 150 (280)
+++|+++.|.||.|+|||||++.++......|..+.|+.-....... .+. ..+.... .......++.... +
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~~a~~lGv--d~~~L~I--~~~~~~e~il~~~-~ 454 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGV--DIDNLLC--SQPDTGEQALEIC-D 454 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTC--CTTTCEE--ECCSSHHHHHHHH-H
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHcCC--CHHHeEE--eCCCCHHHHHHHH-H
Confidence 89999999999999999999966666555567777777654322110 000 0001100 0012233333322 2
Q ss_pred hh--ccCCCEEEEeCccc------------------H-HHHHHHHHHH---HhhcCCEEEEEEechhHhhhccCCc----
Q 023563 151 DA--YDQVDVIGIDEAQF------------------F-EDLYDFCREA---ADHDGKTVIVAGLDGDYLRRSFGSV---- 202 (280)
Q Consensus 151 aL--~~~p~lLlLDEP~~------------------~-~~i~~~l~~l---~~~~g~tviivtHdl~~~~~~~~~~---- 202 (280)
.+ -.+|+++++|.-+. + ..+...++++ +++.|++||+++|-...+...|++-
T Consensus 455 ~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~ps 534 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTT 534 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECS
T ss_pred HHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCC
Confidence 22 25899999999721 1 1244455555 5678999999999655443333221
Q ss_pred --cccccccceEEEeec-eecccc
Q 023563 203 --IDIIPLADSVTKLTA-RCEFCG 223 (280)
Q Consensus 203 --~~ll~~aD~i~~L~~-~i~~~g 223 (280)
.-|-.+||-++.|.. .....|
T Consensus 535 Gg~ale~~ADv~l~L~R~~~~~~g 558 (2050)
T 3cmu_A 535 GGNALKFYASVRLDIRRIGAVKEG 558 (2050)
T ss_dssp SHHHHHHHEEEEEEEEEEEEEEET
T ss_pred CcchhhhhCCEEEEEEecccccCC
Confidence 113357888888877 543444
No 237
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.58 E-value=3e-05 Score=66.00 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
+.+++|+||+||||||++ ++|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~-~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLC-KAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHH
Confidence 568999999999999999 888763
No 238
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.57 E-value=2.5e-06 Score=83.36 Aligned_cols=50 Identities=18% Similarity=0.101 Sum_probs=42.4
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
.+-++++.+.|+...+++++++++ +|++++|+||||+|||||+ +.|++..
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtla-r~ia~~l 132 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLA-KSIAKSL 132 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHH-HHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHH-HHHHHhc
Confidence 344667777777777889999999 8999999999999999999 9998864
No 239
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.57 E-value=2e-05 Score=74.88 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=43.5
Q ss_pred EcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCC
Q 023563 55 PRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSN 115 (280)
Q Consensus 55 ~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~ 115 (280)
.+++++.|++.. ++++|+ +|++++++|||||||||++ ..++++ ...|.++..+..+
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~-~~LA~~l~~~g~~Vllvd~D 135 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTA-AKLALYYKGKGRRPLLVAAD 135 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHH-HHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEeecc
Confidence 456777887654 678888 8999999999999999999 777765 3457777766543
No 240
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.54 E-value=6.5e-05 Score=69.63 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=31.0
Q ss_pred cEEEcCceE-EeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHH
Q 023563 52 MVSPRPPLF-SLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRI 99 (280)
Q Consensus 52 ~l~~~~ls~-~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l 99 (280)
|+.+..|+. .|+. +++..+++.+| +.+|+|||||||||++ -.|
T Consensus 2 ~M~l~~L~l~nFr~---~~~~~i~f~~g-l~vi~G~NGaGKT~il-eAI 45 (371)
T 3auy_A 2 SMILKEIRMNNFKS---HVNSRIKFEKG-IVAIIGENGSGKSSIF-EAV 45 (371)
T ss_dssp CEEEEEEEEEEETT---EEEEEEECCSE-EEEEEECTTSSHHHHH-HHH
T ss_pred CcEEeEEEEEcccc---ccceEEecCCC-eEEEECCCCCCHHHHH-HHH
Confidence 345666653 3333 35677888775 9999999999999999 443
No 241
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.52 E-value=7e-06 Score=76.18 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=36.3
Q ss_pred cEEEcCceEEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 52 MVSPRPPLFSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 52 ~l~~~~ls~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.+.++|++..|+++.++++++|+| +|+|++|+|||||+ +.|.+.
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLl-n~L~~~ 60 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLI-NSLFLT 60 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHH-HHHTTC
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHH-HHHhCC
Confidence 689999999999888999999988 99999999999999 877664
No 242
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.52 E-value=3.7e-05 Score=64.90 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.1
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
...+|.+++|+||+||||||++ +.|..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~-~~L~~ 34 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLI-KKVLS 34 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHH-HHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHH-HHHHH
Confidence 3578999999999999999999 76654
No 243
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.50 E-value=4.3e-05 Score=63.60 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcch
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
.++|+|+||||||||+ +.+.|..
T Consensus 31 kv~lvG~~g~GKSTLl-~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLL-SRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHH-HHHHHSC
T ss_pred EEEEECcCCCCHHHHH-HHHhcCC
Confidence 6899999999999999 8888753
No 244
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.49 E-value=4.4e-05 Score=67.99 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=30.4
Q ss_pred CCeeeeEeeeeEeeCc-----------eEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563 63 QNRNLHSEASVSSPSG-----------EIHVIVGPMFAGKTTTLLRRIQAETQ 104 (280)
Q Consensus 63 ~~~~vl~~isl~i~~G-----------ei~~liGpNGsGKSTLl~~~l~gl~~ 104 (280)
|...+++.+...+..+ ..+.|.||+|+||||++ +.+++...
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la-~~la~~~~ 72 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA-KTLAATLF 72 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHH-HHHHHHHc
Confidence 4444555555555554 68999999999999999 88887543
No 245
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.47 E-value=0.00027 Score=67.29 Aligned_cols=121 Identities=10% Similarity=0.129 Sum_probs=66.8
Q ss_pred eEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeee-cc-----ccccc--cccc
Q 023563 68 HSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTH-DG-----VKLPC--CALT 139 (280)
Q Consensus 68 l~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~-~~-----~~~~~--~~~~ 139 (280)
|+.+.--+++|+++.|.|+.|+|||||++.+.......|..+.++.-......-...+... .+ ..... +...
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~ 266 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASE 266 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCS
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcccCCCCHH
Confidence 3333334899999999999999999999565555555577888876543221100000000 00 00000 1111
Q ss_pred CchHHHHHHhhhhccCCCEEEEeCc-ccHHHHHHHHHHHHhhcCCE--EEEEEe
Q 023563 140 TLSSFRQKFGSDAYDQVDVIGIDEA-QFFEDLYDFCREAADHDGKT--VIVAGL 190 (280)
Q Consensus 140 ~l~~~~~~~a~aL~~~p~lLlLDEP-~~~~~i~~~l~~l~~~~g~t--viivtH 190 (280)
+...+.. +...+.+.++++.|+| .+..++...++++.++.|.. +|++-+
T Consensus 267 ~~~~l~~--a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 267 DWGKLSM--AIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp CHHHHHH--HHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred HHHHHHH--HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 1111111 1112235678888887 45566777777777666777 777754
No 246
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.47 E-value=2.3e-05 Score=72.31 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=33.1
Q ss_pred EcCceEEeCC---eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 55 PRPPLFSLQN---RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 55 ~~~ls~~y~~---~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
++++.+.|+. ..+|++++++++ .++|+|++|||||||+ +.+.|.
T Consensus 11 l~~~~~~~~~~~~~~~l~~i~~~lp---~I~vvG~~~sGKSSLl-n~l~g~ 57 (360)
T 3t34_A 11 IQRACTALGDHGDSSALPTLWDSLP---AIAVVGGQSSGKSSVL-ESIVGK 57 (360)
T ss_dssp TTTTTTSCSSCCSSCCC----CCCC---EEEEECBTTSSHHHHH-HHHHTS
T ss_pred HHHHHHhhCccccccccccccccCC---EEEEECCCCCcHHHHH-HHHhCC
Confidence 5566666653 358999999999 8999999999999999 888884
No 247
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.47 E-value=5e-05 Score=63.69 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
+++|+|+|||||||++ +.|++
T Consensus 3 ~i~i~G~~GsGKSTl~-~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA-QMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCcCHHHHH-HHHHH
Confidence 6899999999999999 88887
No 248
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.45 E-value=0.00017 Score=58.42 Aligned_cols=40 Identities=15% Similarity=0.069 Sum_probs=27.0
Q ss_pred cCCCEEEEeCcccH---------HHHHHHHHHHHhhcCCEEEEEEechh
Q 023563 154 DQVDVIGIDEAQFF---------EDLYDFCREAADHDGKTVIVAGLDGD 193 (280)
Q Consensus 154 ~~p~lLlLDEP~~~---------~~i~~~l~~l~~~~g~tviivtHdl~ 193 (280)
.++.+|++||.... .++.+.+..+....+..+|++|...+
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDE 162 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHH
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHH
Confidence 46779999999432 23456666666554677888887665
No 249
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.44 E-value=5.7e-05 Score=62.98 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcch
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
.++|+|+||||||||+ +.+.|..
T Consensus 7 kv~lvG~~g~GKSTLl-~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLL-SRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHH-HHHHHSC
T ss_pred EEEEECcCCCCHHHHH-HHHhcCC
Confidence 5799999999999999 8888753
No 250
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.43 E-value=0.00078 Score=57.34 Aligned_cols=129 Identities=21% Similarity=0.258 Sum_probs=68.9
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcc-c-------ccccceeeeecccccccccccC----chH
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKD-T-------RYGLDSIVTHDGVKLPCCALTT----LSS 143 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~-~-------~~~~~~v~~~~~~~~~~~~~~~----l~~ 143 (280)
++| .+-+.++||-||||..+-+.....-.|.++.++..... . ...+..-+...+.-+. +...+ ...
T Consensus 27 ~~g-~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~-~~~~~~~~~~~~ 104 (196)
T 1g5t_A 27 ERG-IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFT-WETQNREADTAA 104 (196)
T ss_dssp CCC-CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCC-CCGGGHHHHHHH
T ss_pred cCc-eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccc-cCCCCcHHHHHH
Confidence 344 66688999999999993333333446777777632211 0 0001100001110000 00000 011
Q ss_pred HHHHH--hhhhc--cCCCEEEEeCcccH--------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccCCccccccccce
Q 023563 144 FRQKF--GSDAY--DQVDVIGIDEAQFF--------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFGSVIDIIPLADS 211 (280)
Q Consensus 144 ~~~~~--a~aL~--~~p~lLlLDEP~~~--------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~~~~~ll~~aD~ 211 (280)
....+ ++..+ .+.++|||||.... .+++++|.+-- .+..||+++.+... +|+++||.
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp--~~~~vIlTGr~ap~---------~l~e~AD~ 173 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARP--GHQTVIITGRGCHR---------DILDLADT 173 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC--TTCEEEEECSSCCH---------HHHHHCSE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc--CCCEEEEECCCCcH---------HHHHhCcc
Confidence 11111 23334 67999999999443 34555554322 27889999988653 34579999
Q ss_pred EEEeec
Q 023563 212 VTKLTA 217 (280)
Q Consensus 212 i~~L~~ 217 (280)
|.-|+.
T Consensus 174 VTem~~ 179 (196)
T 1g5t_A 174 VSELRP 179 (196)
T ss_dssp EEECCC
T ss_pred eeeecc
Confidence 999987
No 251
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.41 E-value=1.8e-05 Score=66.35 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=30.1
Q ss_pred eEEeCC-eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 59 LFSLQN-RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 59 s~~y~~-~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+++|++ ..+++++|++.+++. ++|+|++|+|||||+ +.+.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi-~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLL-HMLKD 47 (198)
T ss_dssp -------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHH-HHHSC
T ss_pred HHHHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHH-HHHhc
Confidence 345655 368899999998885 689999999999999 77765
No 252
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.40 E-value=0.00056 Score=59.66 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++|+|+.|+|||||+ +.|.|-
T Consensus 23 ~I~lvG~~g~GKSSli-n~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATG-NSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHH-HHHHTS
T ss_pred EEEEECCCCCcHHHHH-HHHhCC
Confidence 5789999999999999 878774
No 253
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.39 E-value=7.2e-05 Score=67.37 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=23.8
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
.++.++||.||+|||||||+ +.|.++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla-~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS-IQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHHHh
Confidence 56889999999999999999 8887764
No 254
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.39 E-value=0.00021 Score=65.46 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=23.0
Q ss_pred eEeeCceEEEEEcCCCCcHHHHHHHHHh
Q 023563 73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQ 100 (280)
Q Consensus 73 l~i~~Gei~~liGpNGsGKSTLl~~~l~ 100 (280)
--+++|.++.|.||.|+|||||. ..++
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLA-lqlA 144 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLV-HALG 144 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHH-HHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHH-HHHH
Confidence 35888999999999999999999 4443
No 255
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.37 E-value=0.00018 Score=65.36 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=21.4
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
..+..+.|.||.|+||||++ +.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~-~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVA-RLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHH-HHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH-HHHHHH
Confidence 45668899999999999999 766653
No 256
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.37 E-value=4.5e-05 Score=64.05 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.+.|.||.|+|||||+ +.+..
T Consensus 47 ~~ll~G~~G~GKT~l~-~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA-RLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 7899999999999999 76655
No 257
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.35 E-value=0.00011 Score=60.54 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.5
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.+|.+++|+|++||||||+. +.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~-~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQA-SRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHH-HHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 46889999999999999999 77763
No 258
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.32 E-value=0.0001 Score=60.97 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=28.9
Q ss_pred eEeeCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEe
Q 023563 73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVI 112 (280)
Q Consensus 73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~ 112 (280)
+...+|.+++|+|++||||||++ +.++.. ...|..+.++
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~-~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIA-TRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEE
T ss_pred cccCCCcEEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEEEe
Confidence 34568999999999999999999 877764 3344444443
No 259
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.32 E-value=0.00019 Score=58.12 Aligned_cols=40 Identities=18% Similarity=0.048 Sum_probs=27.4
Q ss_pred cCCCEEEEeCcccH----------HHHHHHHHHHHhhcCCEEEEEEechh
Q 023563 154 DQVDVIGIDEAQFF----------EDLYDFCREAADHDGKTVIVAGLDGD 193 (280)
Q Consensus 154 ~~p~lLlLDEP~~~----------~~i~~~l~~l~~~~g~tviivtHdl~ 193 (280)
..|.+|++||.... .++.+.+..+.++.+..+|+++...+
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~ 163 (187)
T 2p65_A 114 EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSE 163 (187)
T ss_dssp TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHH
T ss_pred CCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHH
Confidence 46789999998322 34666777766654667777777654
No 260
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.32 E-value=0.0005 Score=59.14 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcch
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
.++|+|++|+|||||+ +.|.|..
T Consensus 31 ~i~lvG~~g~GKStli-n~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATG-NSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHH-HHHHTSC
T ss_pred EEEEECCCCCCHHHHH-HHHcCCC
Confidence 5789999999999999 8887753
No 261
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.30 E-value=0.00017 Score=66.43 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=30.6
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEecCCc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIKSNK 116 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~~~~ 116 (280)
+++.+++|+|++|||||||+ +.+.|. ...+.++..+..++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLl-n~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFI-EYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHH-HHHHHHhhhcCCeEEEEeecC
Confidence 45789999999999999999 877775 34556666665543
No 262
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.27 E-value=0.00012 Score=62.06 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=25.9
Q ss_pred eEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 73 VSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 73 l~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
+.+++|.+++|+|++||||||+. +.|.+..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~-~~l~~~l 49 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLA-VELEHQL 49 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHH-HHHHHHh
Confidence 45678999999999999999999 8887643
No 263
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.27 E-value=0.00015 Score=59.24 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=21.7
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
++|..++|+|++|+|||||+ +.+.+.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl-~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLL-NALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHH-HHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHhCC
Confidence 36789999999999999999 877764
No 264
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.27 E-value=3e-05 Score=71.95 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=31.4
Q ss_pred eeeEeeeeEeeCceE--EEEEcCCCCcHHHHHHHHHhcc
Q 023563 66 NLHSEASVSSPSGEI--HVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 66 ~vl~~isl~i~~Gei--~~liGpNGsGKSTLl~~~l~gl 102 (280)
.+++.+++.+++|++ ++|+||+||||||+. ++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~-~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIA-EELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHH-HHHHHH
Confidence 367788889999998 999999999999999 877763
No 265
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.27 E-value=0.00034 Score=67.25 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=82.3
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcchhC-CeeEEEecCCcccc----------ccccee----ee-----------
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQK-GRNVAVIKSNKDTR----------YGLDSI----VT----------- 127 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~-g~~i~~~~~~~~~~----------~~~~~v----~~----------- 127 (280)
-+++|+++.|.|+.|+|||||++.++...... |..+.++.-..... .++..- +.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 317 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQ 317 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHH
Confidence 48999999999999999999995555554444 77777775432210 000000 00
Q ss_pred -------ecccc-cccccccCchHHHHHHhhh-hccCCCEEEEeCccc---------H----HHHHHHHHHHHhhcCCEE
Q 023563 128 -------HDGVK-LPCCALTTLSSFRQKFGSD-AYDQVDVIGIDEAQF---------F----EDLYDFCREAADHDGKTV 185 (280)
Q Consensus 128 -------~~~~~-~~~~~~~~l~~~~~~~a~a-L~~~p~lLlLDEP~~---------~----~~i~~~l~~l~~~~g~tv 185 (280)
..... ........+..+..+.... --.+|+++++|=-+. . .++...|+.++++.|++|
T Consensus 318 ~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~v 397 (503)
T 1q57_A 318 WFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVL 397 (503)
T ss_dssp HHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeE
Confidence 00000 0000002233333332111 124799999996521 1 146778888899999999
Q ss_pred EEEEechhHhhh-------------ccCCccccccccceEEEeec
Q 023563 186 IVAGLDGDYLRR-------------SFGSVIDIIPLADSVTKLTA 217 (280)
Q Consensus 186 iivtHdl~~~~~-------------~~~~~~~ll~~aD~i~~L~~ 217 (280)
|+++|--. ... -+.+...|...||-|+.|..
T Consensus 398 i~~~q~~r-~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 398 VVICHLKN-PDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 441 (503)
T ss_dssp EEEEECCC-CSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEE
T ss_pred EEEEcCCc-hhccCccccCCCCChhhhccchHhhecCcEEEEEEe
Confidence 99999975 211 01122334567999999976
No 266
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.25 E-value=0.00013 Score=60.48 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=18.8
Q ss_pred eeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 66 NLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 66 ~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.+++++|++.++. .++|+|++|+|||||+ +.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli-~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLL-HMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHH-HHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHH-HHHhc
Confidence 4678999998887 5689999999999999 66655
No 267
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.25 E-value=0.00011 Score=61.56 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
..+++|+|++||||||+. +.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla-~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVG-EAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHH-HHHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHHH
Confidence 458999999999999999 877653
No 268
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.24 E-value=0.00088 Score=61.59 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
...-+.|.||.|+|||||+ +.++.
T Consensus 116 ~~~~vLl~GppGtGKT~la-~aia~ 139 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG-KCIAS 139 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH-HHHHH
T ss_pred CCceEEEECCCCCCHHHHH-HHHHH
Confidence 4567899999999999999 87765
No 269
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.22 E-value=0.00096 Score=63.55 Aligned_cols=39 Identities=31% Similarity=0.359 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCC
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSN 115 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~ 115 (280)
++.+++++|++|+||||++.++..-+...|.++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 468999999999999999944443445567788776544
No 270
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.21 E-value=0.0018 Score=58.71 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.4
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.+..-+.|.||.|+|||||+ +.++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la-~ala~~ 68 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLA-KAVATE 68 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHH-HHHHHH
T ss_pred CCCceEEEECCCCccHHHHH-HHHHHH
Confidence 34456889999999999999 888763
No 271
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.19 E-value=0.00014 Score=65.63 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.2
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++.+++|+|++|+|||||+ +.+.|.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLl-n~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLL-NKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHH-HHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHH-HHHHCC
Confidence 34558999999999999999 888775
No 272
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.18 E-value=0.00088 Score=56.95 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=27.5
Q ss_pred CCCEEEEeCcccH-------H---HHHHHHHHHHhhcCCEEEEEEechhHhhh
Q 023563 155 QVDVIGIDEAQFF-------E---DLYDFCREAADHDGKTVIVAGLDGDYLRR 197 (280)
Q Consensus 155 ~p~lLlLDEP~~~-------~---~i~~~l~~l~~~~g~tviivtHdl~~~~~ 197 (280)
+..+|++||.+.. . +++..+..... .+..+|++|++.+.+..
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~-~~~~iil~tq~~~~l~~ 138 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRH-QGIDIFVLTQGPKLLDQ 138 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTT-TTCEEEEEESCGGGBCH
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCc-CCeEEEEECCCHHHHhH
Confidence 5889999999442 1 23333433333 48899999999765543
No 273
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=0.00012 Score=66.25 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=27.9
Q ss_pred CCeeeeEeeeeEeeCc--eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 63 QNRNLHSEASVSSPSG--EIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 63 ~~~~vl~~isl~i~~G--ei~~liGpNGsGKSTLl~~~l~gl 102 (280)
|...+++.+.-.+..| ..+.|.||+|+||||++ +.+++.
T Consensus 41 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la-~~la~~ 81 (353)
T 1sxj_D 41 AQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTI-LALTKE 81 (353)
T ss_dssp SCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHH-HHHHHH
Confidence 3444455555555555 34899999999999999 877764
No 274
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.17 E-value=0.00019 Score=62.00 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.6
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
=.+|.+++|+|++||||||+. +.|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~-~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVA-KIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHH-HHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHH-HHHHH
Confidence 367889999999999999999 87765
No 275
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.17 E-value=0.00031 Score=58.36 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCC
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSN 115 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~ 115 (280)
.+++|+|++|||||||+.+++..+...|.+++.+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 3789999999999999944444445566677666543
No 276
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.16 E-value=0.00095 Score=64.34 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=21.3
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
++...-+.|.||+|+|||+++ +.++.
T Consensus 235 ~~~~~~vLL~GppGtGKT~lA-raia~ 260 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIA-RAVAN 260 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHH-HHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHH-HHHHH
Confidence 344456889999999999999 88865
No 277
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.16 E-value=0.00029 Score=58.70 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc-hhCCeeEEEec
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQAE-TQKGRNVAVIK 113 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~gl-~~~g~~i~~~~ 113 (280)
.+++|+||+|||||||+ +.+.+. ...|..++.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~-~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLL-KKLIPALCARGIRPGLIK 41 (174)
T ss_dssp CEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHH-HHHHHhccccCCceeEEe
Confidence 58999999999999999 666553 34455555443
No 278
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.00063 Score=64.07 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=23.4
Q ss_pred eeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 70 EASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 70 ~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.+.+.-++| +.|.||.|+|||+|. +.+++.
T Consensus 176 ~~gi~~prG--vLL~GPPGTGKTllA-kAiA~e 205 (405)
T 4b4t_J 176 SLGIAQPKG--VILYGPPGTGKTLLA-RAVAHH 205 (405)
T ss_dssp HHTCCCCCC--EEEESCSSSSHHHHH-HHHHHH
T ss_pred hCCCCCCCc--eEEeCCCCCCHHHHH-HHHHHh
Confidence 334445555 779999999999999 988873
No 279
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.00077 Score=64.12 Aligned_cols=102 Identities=20% Similarity=0.188 Sum_probs=54.7
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccC
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQ 155 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~ 155 (280)
++-.=+.|.||.|+|||+|. +.+++.. +..+..+.... ++. ...-.....+...+..|-...
T Consensus 213 ~~prGvLL~GPPGtGKTllA-kAiA~e~--~~~~~~v~~s~--------l~s-------k~~Gese~~ir~~F~~A~~~~ 274 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLA-KAVAATI--GANFIFSPASG--------IVD-------KYIGESARIIREMFAYAKEHE 274 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHH-HHHHHHH--TCEEEEEEGGG--------TCC-------SSSSHHHHHHHHHHHHHHHSC
T ss_pred CCCCeEEEECCCCCcHHHHH-HHHHHHh--CCCEEEEehhh--------hcc-------ccchHHHHHHHHHHHHHHhcC
Confidence 33344789999999999999 8888732 22222221110 000 000011112233334455578
Q ss_pred CCEEEEeCccc----------------HHHHHHHHHHHH---hhcCCEEEEEEechhHh
Q 023563 156 VDVIGIDEAQF----------------FEDLYDFCREAA---DHDGKTVIVAGLDGDYL 195 (280)
Q Consensus 156 p~lLlLDEP~~----------------~~~i~~~l~~l~---~~~g~tviivtHdl~~~ 195 (280)
|.||++||--+ ...+..+|..+- ...+..||.+|..++.+
T Consensus 275 P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 275 PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred CceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 99999999811 011334444442 22356788899877644
No 280
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.13 E-value=4.2e-05 Score=78.15 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=28.0
Q ss_pred eeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 71 ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 71 isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
.++.+.+|+.+.|+||+|+|||||+ +.+++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~La-kala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLA-KAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHH-HHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHH-HHHHHHh
Confidence 3667889999999999999999999 9888754
No 281
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.12 E-value=0.00026 Score=57.73 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
|.++.|.|++||||||+. +.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a-~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV-RCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHH-HHHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHHH
Confidence 568999999999999999 77765
No 282
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.10 E-value=0.00025 Score=57.20 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
+++|.||+||||||+. +.|..
T Consensus 3 ~i~l~G~~GsGKsT~~-~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA-AKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 6899999999999999 77754
No 283
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.09 E-value=0.0011 Score=73.36 Aligned_cols=124 Identities=22% Similarity=0.179 Sum_probs=74.4
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCccccccccee--eeecccccccccccCchHHHHHHhhh
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSI--VTHDGVKLPCCALTTLSSFRQKFGSD 151 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~l~~~~~~~a~a 151 (280)
=+++|+++.|.|++|+|||||++.+.......+..+.|+.-......-...- +...+.... ...++.++..+. +.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~--~~~~i~~i~~~~-r~ 804 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCS--QPDTGEQALEIC-DA 804 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEE--CCSSHHHHHHHH-HH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEe--cCCCHHHHHHHH-HH
Confidence 3889999999999999999999555444444566777776543322110000 000111110 112333333332 22
Q ss_pred hc--cCCCEEEEeCcc---c------------H-------HHHHHHHHHHHhhcCCEEEEEEechhHhhhccC
Q 023563 152 AY--DQVDVIGIDEAQ---F------------F-------EDLYDFCREAADHDGKTVIVAGLDGDYLRRSFG 200 (280)
Q Consensus 152 L~--~~p~lLlLDEP~---~------------~-------~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~ 200 (280)
+. ..|+++++|+-+ . + ..+...|+.++++.+++||+++|-.......|+
T Consensus 805 l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~~e~~fg 877 (2050)
T 3cmu_A 805 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 877 (2050)
T ss_dssp HHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccccchhhcC
Confidence 21 479999999941 0 0 124457788888889999999998776666564
No 284
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.00086 Score=63.63 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.=+.|.||.|+|||+|+ +.+++.
T Consensus 207 rGiLL~GPPGtGKT~la-kAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLV-KAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHH-HHHHHH
T ss_pred ceEEEECCCCCCHHHHH-HHHHHH
Confidence 34889999999999999 888873
No 285
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.08 E-value=0.0014 Score=60.25 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=20.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
+..-+.|.||.|+|||||+ +.++..
T Consensus 83 ~~~~iLL~GppGtGKT~la-~ala~~ 107 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLA-KAVATE 107 (355)
T ss_dssp CCCCEEEECSTTSCHHHHH-HHHHHH
T ss_pred CCceEEEECCCCCcHHHHH-HHHHHH
Confidence 3345789999999999999 877763
No 286
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.06 E-value=0.00032 Score=57.80 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=21.6
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+++.++.|.|++||||||+. +.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~-~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLS-QALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHH-HHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 46789999999999999999 76654
No 287
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.05 E-value=0.00068 Score=61.30 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=25.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc-h-hCCeeEEEe
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQAE-T-QKGRNVAVI 112 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~gl-~-~~g~~i~~~ 112 (280)
+.-+.|.||.|+|||+|+ ..++.. . ..|..+.++
T Consensus 152 ~~~lll~G~~GtGKT~La-~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL-AAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp CCEEEEECSTTSSHHHHH-HHHHHHHHHHSCCCEEEE
T ss_pred CceEEEECCCCCCHHHHH-HHHHHHHHHhcCCcEEEE
Confidence 578899999999999999 777653 2 345555444
No 288
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.04 E-value=0.00032 Score=56.28 Aligned_cols=19 Identities=21% Similarity=0.273 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 023563 80 IHVIVGPMFAGKTTTLLRRI 99 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l 99 (280)
+++|.||+||||||+. +.|
T Consensus 3 ~I~l~G~~GsGKsT~a-~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA-KLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHH-HHH
T ss_pred EEEEECCCCCCHHHHH-HHH
Confidence 7899999999999999 777
No 289
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.01 E-value=0.0014 Score=59.11 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
+..-+.|.||.|+|||+|+ +.++..
T Consensus 50 ~~~~vLl~GppGtGKT~la-~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLA-KAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHH-HHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHH
Confidence 3456889999999999999 888663
No 290
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.00 E-value=0.0043 Score=57.44 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
++.-+.|.||.|+|||+++ +.++.
T Consensus 147 ~~~~vLL~GppGtGKT~la-~aia~ 170 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLA-KAVAA 170 (389)
T ss_dssp CCSEEEEESSTTSCHHHHH-HHHHH
T ss_pred CCceEEEECCCCCCHHHHH-HHHHH
Confidence 3567899999999999999 87765
No 291
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.00 E-value=0.0029 Score=55.37 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=20.9
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.++.++.|.|++||||||+. +.|..
T Consensus 2 ~~~~lIvl~G~pGSGKSTla-~~La~ 26 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFS-KNLAK 26 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHH-HHHHH
Confidence 35678999999999999999 77664
No 292
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.98 E-value=0.00039 Score=57.05 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
|.++.|.||+||||||+. +.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~-~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS-QLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHH-HHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHH
Confidence 678999999999999999 77654
No 293
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.00093 Score=63.41 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.=+.|.||.|+|||+|. +.+++.
T Consensus 217 rGvLLyGPPGTGKTlLA-kAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLA-KAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHH-HHHHHH
T ss_pred CCCceECCCCchHHHHH-HHHHHH
Confidence 34889999999999999 988873
No 294
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.00084 Score=63.83 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=21.6
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
+++-.=+.|.||.|+|||+|. +.+++.
T Consensus 212 ~~~prGvLLyGPPGTGKTllA-kAiA~e 238 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLA-RACAAQ 238 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHH-HHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHH-HHHHHH
Confidence 333445789999999999999 988873
No 295
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.95 E-value=0.00025 Score=62.02 Aligned_cols=27 Identities=37% Similarity=0.187 Sum_probs=23.9
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
...++.++.|+||+||||||+. +.|..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla-~~L~~ 54 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIH-RIKQK 54 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHH-HHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 5678899999999999999999 77765
No 296
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.93 E-value=0.00042 Score=60.77 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~g 101 (280)
.+++|+||||||||||. +.|+.
T Consensus 2 ~li~I~G~~GSGKSTla-~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMA-IQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHH-HHHHH
T ss_pred eEEEEECCCCcCHHHHH-HHHHh
Confidence 37899999999999999 77764
No 297
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.92 E-value=0.00047 Score=56.20 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|++|+|||||+ +.+.+
T Consensus 9 ~i~lvG~~gvGKStL~-~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIF-NALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHH-HHHHT
T ss_pred EEEEECCCCCCHHHHH-HHHhC
Confidence 6899999999999999 77776
No 298
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.91 E-value=0.0015 Score=54.04 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.+.|.||.|+||||++ +.+..
T Consensus 40 ~~ll~G~~G~GKT~l~-~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATA-IALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHH-HHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHH
Confidence 3899999999999999 66654
No 299
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.88 E-value=0.00059 Score=57.75 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.+-+++|.|++||||||+. +.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~-~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVA-NAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHH-HHHHH
T ss_pred CceEEEEECCCCCCHHHHH-HHHHH
Confidence 4568999999999999999 88876
No 300
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.88 E-value=0.0034 Score=59.51 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.5
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.+..-+.|.||.|+|||||+ +.++..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA-~aia~~ 190 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLA-KAVATE 190 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHH-HHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH-HHHHHH
Confidence 34457889999999999999 888764
No 301
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.87 E-value=0.00016 Score=63.21 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=23.4
Q ss_pred EeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 69 SEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 69 ~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.++.+..+.| +.|.||+|+|||||+ +.++.
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la-~~la~ 66 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLA-KAVAG 66 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHH-HHHHH
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHH-HHHHH
Confidence 3444555666 779999999999999 88876
No 302
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.87 E-value=0.00033 Score=57.44 Aligned_cols=24 Identities=21% Similarity=0.061 Sum_probs=21.0
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHh
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQ 100 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~ 100 (280)
..+.++.|+|++||||||+. +.+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~-~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG-KELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH-HHHH
T ss_pred ccCCeEEEEeCCCCCHHHHH-HHHH
Confidence 46778999999999999999 7775
No 303
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.86 E-value=0.00052 Score=56.31 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++|+|++|+|||||+ +.+.+.
T Consensus 4 kv~ivG~~gvGKStLl-~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLL-QQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHH-HHHTCC
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 4789999999999999 878774
No 304
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.85 E-value=0.00057 Score=56.62 Aligned_cols=21 Identities=33% Similarity=0.320 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
+++|.|++||||||+. +.|+.
T Consensus 2 ~I~i~G~~GsGKsT~~-~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS-AEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHH-HHHHH
T ss_pred EEEEECCCccCHHHHH-HHHHH
Confidence 6899999999999999 77765
No 305
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.85 E-value=0.0027 Score=55.59 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=21.1
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
....-+.|.||.|+||||++ +.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la-~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALA-AKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHH-HHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHH-HHHHHH
Confidence 34457889999999999999 877663
No 306
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.84 E-value=0.00059 Score=56.03 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+.++.|+||+||||||+. +.|+.
T Consensus 5 ~~~i~l~G~~GsGKst~a-~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG-SQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHH-HHHHH
T ss_pred CCEEEEECCCCCCHHHHH-HHHHH
Confidence 568999999999999999 77753
No 307
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.84 E-value=0.0014 Score=58.59 Aligned_cols=23 Identities=22% Similarity=0.039 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~gl 102 (280)
..+.|.||.|+|||+|. +.++..
T Consensus 37 ~~lLl~GppGtGKT~la-~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC-ELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHH-HHHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHHH
Confidence 46778899999999999 887763
No 308
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.84 E-value=0.00063 Score=56.57 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+|-+++|.|+.||||||+. +.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~-~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC-MNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH-HHHHH
Confidence 6789999999999999999 77765
No 309
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.83 E-value=0.0072 Score=54.32 Aligned_cols=21 Identities=33% Similarity=0.267 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.+.|.||.|+||||++ +.++.
T Consensus 57 ~vll~G~~GtGKT~la-~~ia~ 77 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLA-NIISY 77 (338)
T ss_dssp CEEEECSTTSSHHHHH-HHHHH
T ss_pred eEEEECcCCCCHHHHH-HHHHH
Confidence 5789999999999999 87755
No 310
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.81 E-value=0.00043 Score=68.07 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc-chhCCeeEEEecCC
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA-ETQKGRNVAVIKSN 115 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g-l~~~g~~i~~~~~~ 115 (280)
.+.++.|.||.|+||||++ +.+.. +...|..+.+..+.
T Consensus 203 ~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~g~~Vl~~ApT 241 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTT-KAVADLAESLGLEVGLCAPT 241 (574)
T ss_dssp TCSEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEEESS
T ss_pred hCCEEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEEEecCc
Confidence 4679999999999999999 54444 34466666665443
No 311
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.81 E-value=0.00065 Score=55.09 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~g 101 (280)
.++.|.|++||||||+. +.|..
T Consensus 3 ~~I~i~G~~GsGKST~a-~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA-REFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHH-HHHHH
T ss_pred eEEEEecCCCCCHHHHH-HHHHh
Confidence 47899999999999999 77664
No 312
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.81 E-value=0.00073 Score=56.02 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
..+++|.|++||||||+. +.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~-~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVA-ALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHT
T ss_pred ceEEEEECCCCCCHHHHH-HHHHHC
Confidence 458999999999999999 888763
No 313
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.80 E-value=0.00054 Score=55.97 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
+++|+||+||||||+. +.|+.
T Consensus 6 ~i~i~G~~GsGKsTla-~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA-RALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHH-HHHHH
T ss_pred EEEEEcCCCCCHHHHH-HHHHH
Confidence 5889999999999999 77764
No 314
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.80 E-value=0.00077 Score=56.14 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+|.+++|.|+.||||||+. +.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~-~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA-TLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH-HHHHH
Confidence 4778999999999999999 77755
No 315
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.79 E-value=0.0088 Score=52.88 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.+..+.|.||.|+||||++ +.++..
T Consensus 66 ~~~~vll~G~~GtGKT~la-~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA-LKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH-HHHHHH
T ss_pred CCceEEEECCCCCCHHHHH-HHHHHH
Confidence 4457899999999999999 777654
No 316
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.79 E-value=0.00064 Score=60.87 Aligned_cols=26 Identities=23% Similarity=0.133 Sum_probs=21.8
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
-..|.++.|.||+||||||+. +.+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla-~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLR-SAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHH-HHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 456789999999999999999 66643
No 317
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.0013 Score=62.98 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=21.1
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
++-.=+.|.||.|+|||+|. +.+++.
T Consensus 241 ~pprGILLyGPPGTGKTlLA-kAiA~e 266 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCA-RAVANR 266 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHH-HHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHH-HHHHhc
Confidence 33344779999999999999 988873
No 318
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.77 E-value=0.00071 Score=55.80 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.6
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.++.+++|.|+.||||||+. +.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~-~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC-EKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH-HHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH-HHHHH
Confidence 46789999999999999999 77754
No 319
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.77 E-value=0.00075 Score=56.46 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.9
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.+|.+++|.|+.||||||+. +.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~-~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQS-KLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHH-HHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHH-HHHHH
Confidence 46889999999999999999 77764
No 320
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.76 E-value=0.00069 Score=59.11 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.-+++|.||+||||||+. +.|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla-~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVS-RGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHH-HHHHH
T ss_pred CeEEEEECCCCCCHHHHH-HHHHH
Confidence 348999999999999999 87763
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.75 E-value=0.00084 Score=55.07 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+.+++|.|++||||||+. +.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a-~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC-ARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHH-HHHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHHH
Confidence 568999999999999999 66643
No 322
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.75 E-value=0.0018 Score=61.40 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=29.9
Q ss_pred eEeeCc--eEEEEEcCCCCcHHHHHHHHHhc-chhCCeeEEEecCC
Q 023563 73 VSSPSG--EIHVIVGPMFAGKTTTLLRRIQA-ETQKGRNVAVIKSN 115 (280)
Q Consensus 73 l~i~~G--ei~~liGpNGsGKSTLl~~~l~g-l~~~g~~i~~~~~~ 115 (280)
|.+.+| .+++|+|++|+||||++ ..|++ +...|.++.++..+
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla-~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTA-AKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHH-HHHHHHHHHHHCCEEEECCS
T ss_pred ccccCCCCeEEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEEecc
Confidence 444434 59999999999999999 55555 34456777776544
No 323
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.74 E-value=0.00079 Score=56.37 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.0
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
..+|.+++|.|+.||||||+. +.|..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~-~~L~~ 31 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQS-RKLVE 31 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHH-HHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHH-HHHHH
Confidence 457889999999999999999 76654
No 324
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.72 E-value=0.00073 Score=56.90 Aligned_cols=19 Identities=42% Similarity=0.606 Sum_probs=16.2
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 023563 81 HVIVGPMFAGKTTTLLRRIQ 100 (280)
Q Consensus 81 ~~liGpNGsGKSTLl~~~l~ 100 (280)
+.|+||||||||||+ +.|.
T Consensus 4 IVi~GPSG~GK~Tl~-~~L~ 22 (186)
T 1ex7_A 4 IVISGPSGTGKSTLL-KKLF 22 (186)
T ss_dssp EEEECCTTSSHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHH-HHHH
Confidence 679999999999999 5443
No 325
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.72 E-value=0.0012 Score=60.22 Aligned_cols=23 Identities=22% Similarity=0.119 Sum_probs=19.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+..+.|.||.|+|||||+ +.+..
T Consensus 45 ~~~vll~G~~G~GKT~la-~~l~~ 67 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS-KYIFN 67 (384)
T ss_dssp CCEEEEEECTTSSHHHHH-HHHHH
T ss_pred CCcEEEECCCCCCHHHHH-HHHHH
Confidence 458999999999999999 76665
No 326
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.72 E-value=0.00039 Score=58.33 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcch-hCCeeEEEe
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAET-QKGRNVAVI 112 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl~-~~g~~i~~~ 112 (280)
+++|.|++||||||++ +.|.... ..|..+..+
T Consensus 2 ~I~i~G~~GsGKsTl~-~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLV-EKLSGAFRAAGRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHH-HHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEEEE
Confidence 6899999999999999 7776532 234444433
No 327
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.71 E-value=0.0017 Score=60.27 Aligned_cols=63 Identities=14% Similarity=0.006 Sum_probs=41.0
Q ss_pred cCCCEEEEeCccc---------HHHHHHHHHHHHhhcCCEEEEEEechhHhhhccC--CccccccccceEEEeec
Q 023563 154 DQVDVIGIDEAQF---------FEDLYDFCREAADHDGKTVIVAGLDGDYLRRSFG--SVIDIIPLADSVTKLTA 217 (280)
Q Consensus 154 ~~p~lLlLDEP~~---------~~~i~~~l~~l~~~~g~tviivtHdl~~~~~~~~--~~~~ll~~aD~i~~L~~ 217 (280)
..|.++++||... ...+.+++++.++ .|..++++||++..+...=. ....++.-|+..+++..
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~ 334 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-YNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQ 334 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-GTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-hCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCC
Confidence 3689999999821 1224455555554 59999999999987642000 02356677888777764
No 328
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.67 E-value=0.0022 Score=61.95 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=53.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHH--hhhhccC
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKF--GSDAYDQ 155 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~--a~aL~~~ 155 (280)
...+.|.||.|+||||++ +.++... +..+..+........ .+... . .........+..+.... ......+
T Consensus 77 ~~~lLL~GppGtGKTtla-~~la~~l--~~~~i~in~s~~~~~---~~~~~-~-i~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA-HLVAQEL--GYDILEQNASDVRSK---TLLNA-G-VKNALDNMSVVGYFKHNEEAQNLNGK 148 (516)
T ss_dssp CSEEEEECSTTSSHHHHH-HHHHHHT--TCEEEEECTTSCCCH---HHHHH-T-GGGGTTBCCSTTTTTC----CCSSTT
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHHc--CCCEEEEeCCCcchH---HHHHH-H-HHHHhccccHHHHHhhhhhhhhccCC
Confidence 358899999999999999 8776533 444443332211000 00000 0 00000000011111100 0012357
Q ss_pred CCEEEEeCccc----HHHHHHHHHHHHhhcCCEEEEEEechh
Q 023563 156 VDVIGIDEAQF----FEDLYDFCREAADHDGKTVIVAGLDGD 193 (280)
Q Consensus 156 p~lLlLDEP~~----~~~i~~~l~~l~~~~g~tviivtHdl~ 193 (280)
+.+|++||... ....++.|.++.++.+..+|+++.+..
T Consensus 149 ~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~ 190 (516)
T 1sxj_A 149 HFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERN 190 (516)
T ss_dssp SEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTT
T ss_pred CeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 89999999922 112234444554444677899988754
No 329
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.63 E-value=0.001 Score=54.50 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
++.|.|++||||||+. +.|..
T Consensus 3 ~I~i~G~~GsGKsT~~-~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL-AKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 6899999999999999 76654
No 330
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.63 E-value=0.00068 Score=55.35 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=16.3
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.++.++.|.|++||||||+. +.|..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a-~~La~ 27 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTA-HTLHE 27 (183)
T ss_dssp --CCEEEEECCC----CHHH-HHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 35678999999999999999 77753
No 331
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.62 E-value=0.00038 Score=57.63 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.0
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
++.+.+++|.|+.||||||+. +.|..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a-~~L~~ 34 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQC-EKLVE 34 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHH-HHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH-HHHHH
Confidence 456779999999999999999 77754
No 332
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.61 E-value=0.0028 Score=52.44 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|++|+|||||+ +.+.|
T Consensus 8 kv~lvG~~~vGKSsL~-~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLA-NIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhc
Confidence 4889999999999999 66654
No 333
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.61 E-value=0.0023 Score=65.30 Aligned_cols=99 Identities=22% Similarity=0.211 Sum_probs=53.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccCCCE
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQVDV 158 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p~l 158 (280)
.=+.|.||.|+|||+|+ +.+++.. |.....+... .++. ...-..-..+...+..|....|.|
T Consensus 239 ~GILL~GPPGTGKT~LA-raiA~el--g~~~~~v~~~--------~l~s-------k~~gese~~lr~lF~~A~~~~PsI 300 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA-RAVANET--GAFFFLINGP--------EIMS-------KLAGESESNLRKAFEEAEKNAPAI 300 (806)
T ss_dssp CEEEEECCTTSCHHHHH-HHHHTTT--TCEEEEEEHH--------HHHS-------SCTTHHHHHHHHHHHHHTTSCSEE
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHh--CCeEEEEEhH--------Hhhc-------ccchHHHHHHHHHHHHHHHcCCeE
Confidence 34789999999999999 9888732 2221111100 0000 000001112233334455678999
Q ss_pred EEEeCccc------------HH----HHHHHHHHHHhhcCCEEEEEEechhHh
Q 023563 159 IGIDEAQF------------FE----DLYDFCREAADHDGKTVIVAGLDGDYL 195 (280)
Q Consensus 159 LlLDEP~~------------~~----~i~~~l~~l~~~~g~tviivtHdl~~~ 195 (280)
|++||--+ .. .++..+..+....+..||.+|..++.+
T Consensus 301 IfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp EEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred EEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 99999811 11 233344444344466778888776654
No 334
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.60 E-value=0.004 Score=49.36 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.+.-+.|.||.|+|||++. +.+..
T Consensus 26 ~~~~vll~G~~GtGKt~lA-~~i~~ 49 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVA-RYFHK 49 (143)
T ss_dssp CSSCEEEEEETTCCHHHHH-GGGCC
T ss_pred CCCcEEEECCCCccHHHHH-HHHHH
Confidence 3456889999999999999 87765
No 335
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.59 E-value=0.01 Score=53.04 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=48.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhh--hhccCCC
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGS--DAYDQVD 157 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~--aL~~~p~ 157 (280)
.+.+.||.|+||||++ +.++... +.++..+..... ....+......++. .+..+++
T Consensus 50 ~~L~~G~~G~GKT~la-~~la~~l--~~~~~~i~~~~~-------------------~~~~i~~~~~~~~~~~~~~~~~~ 107 (324)
T 3u61_B 50 IILHSPSPGTGKTTVA-KALCHDV--NADMMFVNGSDC-------------------KIDFVRGPLTNFASAASFDGRQK 107 (324)
T ss_dssp EEEECSSTTSSHHHHH-HHHHHHT--TEEEEEEETTTC-------------------CHHHHHTHHHHHHHBCCCSSCEE
T ss_pred EEEeeCcCCCCHHHHH-HHHHHHh--CCCEEEEccccc-------------------CHHHHHHHHHHHHhhcccCCCCe
Confidence 5667788999999999 7776532 333322221100 00011111111111 1234789
Q ss_pred EEEEeCcccH--HHHHHHHHHHHhh--cCCEEEEEEechhH
Q 023563 158 VIGIDEAQFF--EDLYDFCREAADH--DGKTVIVAGLDGDY 194 (280)
Q Consensus 158 lLlLDEP~~~--~~i~~~l~~l~~~--~g~tviivtHdl~~ 194 (280)
+|++||.... .+..+.|.++.++ .+..+|++|.+...
T Consensus 108 vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 108 VIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp EEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred EEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 9999999332 3333333333322 26788888887663
No 336
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.57 E-value=0.0018 Score=61.68 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=24.1
Q ss_pred eeeeEeeCceE--EEEEcCCCCcHHHHHHHHHhcc
Q 023563 70 EASVSSPSGEI--HVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 70 ~isl~i~~Gei--~~liGpNGsGKSTLl~~~l~gl 102 (280)
.+.-.+..|.+ +.|.||.|+||||++ +.|+..
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlA-r~ia~~ 73 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLA-EVIARY 73 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHH-HHHHHH
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHH-HHHHHH
Confidence 34444555554 889999999999999 888763
No 337
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.56 E-value=0.0039 Score=59.18 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|++|+|||||+ +.+.|
T Consensus 25 ~V~lvG~~nvGKSTL~-n~l~~ 45 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIF-NRIAG 45 (456)
T ss_dssp EEEEECSSSSSHHHHH-HHHEE
T ss_pred EEEEECCCCCcHHHHH-HHHhC
Confidence 6899999999999999 87877
No 338
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.53 E-value=0.0014 Score=55.62 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+|-+++|+|+.||||||+. +.|+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a-~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQA-PNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHH
Confidence 5678999999999999999 77654
No 339
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.53 E-value=0.0013 Score=54.20 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
+++|.|+.||||||+. +.|..
T Consensus 2 ~I~l~G~~GsGKsT~~-~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQI-QLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 6899999999999999 76654
No 340
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.53 E-value=0.0065 Score=55.13 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=21.9
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.+|..+.|.||.|+||||++ +.++..
T Consensus 68 ~~~~~vLl~GppGtGKT~la-~~la~~ 93 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIA-MGMAQA 93 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHH-HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHHH
Confidence 34668999999999999999 777654
No 341
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.53 E-value=0.0034 Score=57.61 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=19.0
Q ss_pred CceEEEE--EcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVI--VGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~l--iGpNGsGKSTLl~~~l~g 101 (280)
.+..+.| .||.|+|||||+ +.+..
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~-~~~~~ 74 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLA-KFTVK 74 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHH-HHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHH-HHHHH
Confidence 4556777 899999999999 65554
No 342
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.49 E-value=0.0013 Score=54.72 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
+++|.|++||||||+. +.++.
T Consensus 4 ~i~i~G~~GsGKst~~-~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA-RRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 8999999999999999 87765
No 343
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.48 E-value=0.034 Score=44.83 Aligned_cols=109 Identities=19% Similarity=0.274 Sum_probs=52.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCCcccccccceeeeecccccccccccCchHHHHHHhhhhccCC
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSNKDTRYGLDSIVTHDGVKLPCCALTTLSSFRQKFGSDAYDQV 156 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~a~aL~~~p 156 (280)
+.=.++|+|+.|+|||||+ +.+.+-.... + .+.. ..... .+.........+...+...+.... ...+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~-~~l~~~~~~~----~-~~t~--~~~~~-~~~~~~~~~~~~Dt~G~~~~~~~~-~~~~~~~ 86 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTIL-KKFNGEDVDT----I-SPTL--GFNIK-TLEHRGFKLNIWDVGGQKSLRSYW-RNYFEST 86 (186)
T ss_dssp CCEEEEEECSTTSSHHHHH-HHHTTCCCSS----C-CCCS--SEEEE-EEEETTEEEEEEEECCSHHHHTTG-GGGCTTC
T ss_pred CeeEEEEECCCCCCHHHHH-HHHhcCCCCc----c-cccC--ccceE-EEEECCEEEEEEECCCCHhHHHHH-HHHhcCC
Confidence 3446899999999999999 6665522100 0 0000 00000 011111111222233333332221 2334455
Q ss_pred CEE--EEe--CcccHHHHHHHHHHHHhh---cCCEEEEEEechhHh
Q 023563 157 DVI--GID--EAQFFEDLYDFCREAADH---DGKTVIVAGLDGDYL 195 (280)
Q Consensus 157 ~lL--lLD--EP~~~~~i~~~l~~l~~~---~g~tviivtHdl~~~ 195 (280)
+++ ++| .|.+...+.+.+.++.+. .+..++++..-.|..
T Consensus 87 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (186)
T 1ksh_A 87 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132 (186)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence 544 455 455555555555555432 367888887766643
No 344
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.45 E-value=0.0015 Score=55.71 Aligned_cols=25 Identities=32% Similarity=0.232 Sum_probs=20.2
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.++.+++|.|+.||||||+. +.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a-~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVS-SRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHH-HHHHH
T ss_pred ccCcEEEEECCCCCCHHHHH-HHHHH
Confidence 45678999999999999999 77753
No 345
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.44 E-value=0.0028 Score=54.20 Aligned_cols=35 Identities=26% Similarity=0.161 Sum_probs=26.0
Q ss_pred CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHH
Q 023563 63 QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRR 98 (280)
Q Consensus 63 ~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~ 98 (280)
.....++..-+.+ .|..+.|+||+|+|||||.+.+
T Consensus 20 a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 20 AERRSMHGVLVDI-YGLGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp -CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHH
T ss_pred CcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHH
Confidence 3444566666665 5788999999999999999433
No 346
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.42 E-value=0.0018 Score=53.89 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQ 100 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~ 100 (280)
...+++|.|+.||||||+. +.|.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~-~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQC-EKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHH-HHHH
T ss_pred CCcEEEEECCCCCCHHHHH-HHHH
Confidence 3458999999999999999 7665
No 347
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.41 E-value=0.0026 Score=57.87 Aligned_cols=36 Identities=25% Similarity=0.147 Sum_probs=30.1
Q ss_pred CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHH
Q 023563 63 QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRI 99 (280)
Q Consensus 63 ~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l 99 (280)
.....+++..+.+ .|.-+.|.|+||+||||+.+.++
T Consensus 130 ~~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~ 165 (314)
T 1ko7_A 130 ARTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELI 165 (314)
T ss_dssp CEEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 4457899999998 78999999999999999993333
No 348
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.41 E-value=0.0014 Score=55.63 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.+.++.|+||+||||||+. +.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~-~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQC-ELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHH
Confidence 4567899999999999999 77654
No 349
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.40 E-value=0.0017 Score=53.18 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
+++|.|+.||||||+. +.+..
T Consensus 2 ~I~l~G~~GsGKsT~~-~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA-KKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 6899999999999999 77654
No 350
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.39 E-value=0.0016 Score=57.18 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++|+|++|||||||+ +.+.|.
T Consensus 5 ~i~lvG~~g~GKTTL~-n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIF-NALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHH-HHHHTT
T ss_pred EEEEECCCCCCHHHHH-HHHhCC
Confidence 5899999999999999 888775
No 351
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.39 E-value=0.0019 Score=53.85 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.+-+++|.|+.||||||+. +.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a-~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQA-VKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHH
Confidence 4568999999999999999 77754
No 352
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.38 E-value=0.0018 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~g 101 (280)
++++|.|+.||||||+. +.|+.
T Consensus 8 ~~i~l~G~~GsGKSTva-~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLA-QELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHH-HHHHH
T ss_pred ceEEEECCCCCCHHHHH-HHHHH
Confidence 68999999999999999 77754
No 353
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.38 E-value=0.002 Score=52.70 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=19.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+.+++|.|+.||||||+. +.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~-~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQC-ANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHH-HHHHH
T ss_pred CcEEEEECCCCCCHHHHH-HHHHH
Confidence 468999999999999999 76653
No 354
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.37 E-value=0.0018 Score=54.50 Aligned_cols=20 Identities=35% Similarity=0.267 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQ 100 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~ 100 (280)
.++|.||.||||||+. +.|.
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA-EQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHH-HHHH
Confidence 4789999999999999 7664
No 355
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.32 E-value=0.0017 Score=52.43 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~g 101 (280)
.+++|.|+.||||||+. +.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a-~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG-RELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHH-HHHHH
T ss_pred ceEEEECCCCCCHHHHH-HHHHH
Confidence 36899999999999999 77654
No 356
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.32 E-value=0.011 Score=60.48 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcchh
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQAETQ 104 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~gl~~ 104 (280)
..+.|+||+|+|||+++ +.++....
T Consensus 589 ~~vLl~Gp~GtGKT~lA-~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA-KTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHH-HHHHHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHHHhc
Confidence 47889999999999999 88877543
No 357
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.31 E-value=0.0018 Score=60.05 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcch
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
+++|+|++|||||||+ +.+.|..
T Consensus 181 ~V~lvG~~naGKSTLl-n~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLF-NSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHH-HHHHCC-
T ss_pred EEEEECCCCCCHHHHH-HHHHCCC
Confidence 4999999999999999 8888853
No 358
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.30 E-value=0.0022 Score=51.51 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
+++|.|+.||||||+. +.|..
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG-SLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHH-HHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHH
Confidence 5889999999999999 77754
No 359
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.29 E-value=0.0019 Score=60.97 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~gl 102 (280)
-.++|+|+||+|||||+ +.+.|.
T Consensus 181 ~kvaivG~~gvGKSTLl-n~l~g~ 203 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLF-NAILNK 203 (439)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHTS
T ss_pred ceEEEECCCCCCHHHHH-HHHhCC
Confidence 37999999999999999 888875
No 360
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.29 E-value=0.0021 Score=54.11 Aligned_cols=20 Identities=40% Similarity=0.278 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQ 100 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~ 100 (280)
.++|.||.||||||+. +.|+
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG-ERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHH-HHHH
Confidence 4789999999999999 7664
No 361
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.28 E-value=0.0017 Score=53.28 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~g 101 (280)
.+++|+|+.||||||+. +.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a-~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG-RRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHH-HHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHH
Confidence 46899999999999999 76654
No 362
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.28 E-value=0.0016 Score=61.14 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=24.2
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.+..|..++|+|+||+|||||+ +.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~-n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFF-NVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHH-HHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHH-HHHHCC
Confidence 4567888999999999999999 888875
No 363
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.28 E-value=0.011 Score=60.35 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.-+.|+||+|+||||++ +.++..
T Consensus 192 ~~vlL~G~pG~GKT~la-~~la~~ 214 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV-EGLAQR 214 (854)
T ss_dssp CCCEEEECTTSCHHHHH-HHHHHH
T ss_pred CceEEEcCCCCCHHHHH-HHHHHH
Confidence 45789999999999999 877764
No 364
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.20 E-value=0.0025 Score=55.44 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~g 101 (280)
-+++|.|++||||||+. +.|..
T Consensus 23 ~iI~I~G~~GSGKST~a-~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVC-AKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEEECCCCCCHHHHH-HHHHH
Confidence 47999999999999999 76654
No 365
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.20 E-value=0.0026 Score=53.63 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=19.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.-++||.|+.||||||+. +.+..
T Consensus 12 ~~iIgltG~~GSGKSTva-~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVC-EILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHH-HHHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHHH
Confidence 458999999999999999 77754
No 366
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.17 E-value=0.0031 Score=54.71 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.6
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHh
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQ 100 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~ 100 (280)
.++-+++|.||.||||||+. +.|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a-~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQS-LNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHH-HHHH
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHH
Confidence 35678999999999999999 7665
No 367
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.16 E-value=0.0081 Score=53.05 Aligned_cols=20 Identities=30% Similarity=0.316 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhc
Q 023563 81 HVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 81 ~~liGpNGsGKSTLl~~~l~g 101 (280)
+.|.||.|+||||++ +.+..
T Consensus 45 ~ll~G~~G~GKt~la-~~l~~ 64 (323)
T 1sxj_B 45 MIISGMPGIGKTTSV-HCLAH 64 (323)
T ss_dssp EEEECSTTSSHHHHH-HHHHH
T ss_pred EEEECcCCCCHHHHH-HHHHH
Confidence 889999999999999 66654
No 368
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.16 E-value=0.016 Score=51.41 Aligned_cols=23 Identities=35% Similarity=0.278 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
...+.|.||.|+||||++ +.++.
T Consensus 38 ~~~vll~G~~GtGKT~la-~~i~~ 60 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA-HVIAH 60 (324)
T ss_dssp CCCCEEECCTTCCCHHHH-HHHHH
T ss_pred CCcEEEECCCCCCHHHHH-HHHHH
Confidence 356889999999999999 77765
No 369
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.15 E-value=0.018 Score=52.09 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.+.|.||.|+||||++ +.++.
T Consensus 40 ~~ll~G~~G~GKT~la-~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA-RLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 5889999999999999 77765
No 370
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.12 E-value=0.002 Score=62.34 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=30.9
Q ss_pred CCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhcch
Q 023563 63 QNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 63 ~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
|...+++-+-..+..|.-+.|.||.|+|||+|+ +.++...
T Consensus 26 Gq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA-raLa~~l 65 (500)
T 3nbx_X 26 ERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA-RRLKFAF 65 (500)
T ss_dssp SCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH-HHGGGGB
T ss_pred HHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH-HHHHHHH
Confidence 444445555566667788999999999999999 9888754
No 371
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.11 E-value=0.016 Score=58.28 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcch
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
.+.|.||.|+|||+++ +.++...
T Consensus 490 ~~ll~G~~GtGKT~la-~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT-VQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCcHHHHH-HHHHHHh
Confidence 6889999999999999 8777644
No 372
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.0029 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~gl 102 (280)
-.++|+|+.|+|||||+ +.+.+-
T Consensus 49 ~~i~vvG~~g~GKSsll-~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLL-TLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHH-HHHHHS
T ss_pred CEEEEECCCCCCHHHHH-HHHhcC
Confidence 37899999999999999 766663
No 373
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.10 E-value=0.003 Score=53.86 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
+++|.|++||||||+. +.|..
T Consensus 2 ~I~l~G~~GsGKsT~a-~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG-NLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 5789999999999999 76654
No 374
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.08 E-value=0.03 Score=56.36 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcch
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAET 103 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl~ 103 (280)
.+.|.||.|+|||++. +.++...
T Consensus 523 ~~Ll~Gp~GtGKT~lA-~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA-RALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 6889999999999999 8887754
No 375
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.05 E-value=0.003 Score=51.60 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~g 101 (280)
-.++|+|++|+|||||+ +.+.+
T Consensus 17 ~ki~ivG~~~vGKSsL~-~~l~~ 38 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLL-KQLAS 38 (181)
T ss_dssp EEEEEEESTTSSHHHHH-HHHCC
T ss_pred eEEEEECCCCCCHHHHH-HHHhc
Confidence 36889999999999999 77765
No 376
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.04 E-value=0.003 Score=50.00 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++|+|+.|+|||||+ +.+.+.
T Consensus 4 ki~~vG~~~~GKSsli-~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALA-RIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHH-HHHCCC
T ss_pred EEEEECCCCCCHHHHH-HHHcCc
Confidence 4789999999999999 777663
No 377
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.04 E-value=0.0032 Score=56.00 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQ 100 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~ 100 (280)
.-+++|.|++||||||+. +.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva-~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVA-QRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHH
T ss_pred CEEEEEECCCCCCHHHHH-HHHH
Confidence 458999999999999999 7776
No 378
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.04 E-value=0.007 Score=50.62 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=24.7
Q ss_pred eeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHH
Q 023563 65 RNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRI 99 (280)
Q Consensus 65 ~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l 99 (280)
+..++..-+.+ .|.-+.|.|++|+|||||.+.++
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 34455555554 47789999999999999993333
No 379
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.02 E-value=0.0036 Score=49.95 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++|+|+.|+|||||+ +.+.+-
T Consensus 6 ki~i~G~~~vGKSsl~-~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLA-SLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHH-HHHHCC
T ss_pred EEEEECCCCccHHHHH-HHHhcC
Confidence 4789999999999999 767653
No 380
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.01 E-value=0.0032 Score=49.78 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 7 ~i~v~G~~~~GKssl~-~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMI-QRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECcCCCCHHHHH-HHHHc
Confidence 4789999999999999 66654
No 381
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.99 E-value=0.024 Score=49.09 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
.+.-+.|.||.|+|||+++ +.+...
T Consensus 28 ~~~~vll~G~~GtGKt~la-~~i~~~ 52 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA-SRLHYL 52 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH-HHHHHT
T ss_pred CCCCEEEECCCCCcHHHHH-HHHHHh
Confidence 3456789999999999999 888764
No 382
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.99 E-value=0.0081 Score=59.24 Aligned_cols=19 Identities=47% Similarity=0.496 Sum_probs=17.6
Q ss_pred CceEEEEEcCCCCcHHHHH
Q 023563 77 SGEIHVIVGPMFAGKTTTL 95 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl 95 (280)
.+.++.|.||.|+||||++
T Consensus 163 ~~~~~vi~G~pGTGKTt~l 181 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTV 181 (608)
T ss_dssp TBSEEEEECCTTSTHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHH
Confidence 4789999999999999998
No 383
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.98 E-value=0.0034 Score=49.34 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++++|+.|+|||||+ +.+.+
T Consensus 3 ki~v~G~~~~GKSsli-~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF-NRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhC
Confidence 4789999999999999 66654
No 384
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.98 E-value=0.0035 Score=49.32 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 5 ~i~v~G~~~~GKSsli-~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALT-VQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 4789999999999999 55543
No 385
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.97 E-value=0.0033 Score=49.29 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++++|+.|+|||||+ +.+.+
T Consensus 5 ~i~v~G~~~~GKssl~-~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT-IQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 4789999999999999 66654
No 386
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.97 E-value=0.0035 Score=53.16 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+|-++.|+|+.||||||+. +.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a-~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQC-EFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHH-HHHHH
T ss_pred CceEEEEECCCCCCHHHHH-HHHHH
Confidence 3567899999999999999 77754
No 387
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.0039 Score=49.37 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 5 ~i~v~G~~~~GKssli-~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLV-LRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHH-HHHHT
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 4789999999999999 66665
No 388
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.92 E-value=0.0039 Score=49.90 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 11 ~i~v~G~~~~GKssl~-~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLL-LRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHH-HHHCS
T ss_pred EEEEECCCCCCHHHHH-HHHhc
Confidence 4789999999999999 77765
No 389
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.92 E-value=0.0041 Score=49.36 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 4 ki~ivG~~~~GKSsli-~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLA-GTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHH-HHHHC
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 3789999999999999 77765
No 390
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.91 E-value=0.004 Score=52.49 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|.|+.||||||+. +.|..
T Consensus 2 ~I~l~G~~GsGKsT~a-~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA-QFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 4789999999999999 76654
No 391
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.91 E-value=0.0028 Score=51.18 Aligned_cols=24 Identities=42% Similarity=0.332 Sum_probs=19.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+.-.++|+|++|+|||||+ +.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli-~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTIL-YRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHH-HHTCC
T ss_pred CccEEEEECCCCCCHHHHH-HHHhc
Confidence 3447899999999999999 76654
No 392
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.91 E-value=0.0038 Score=49.14 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++++|+.|+|||||+ +.+.+
T Consensus 6 ~i~v~G~~~~GKssl~-~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALT-LQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 4789999999999999 66654
No 393
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.90 E-value=0.0039 Score=49.36 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 8 ~i~v~G~~~~GKSsli-~~l~~ 28 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIM-WRFVE 28 (170)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEECcCCCCHHHHH-HHHHc
Confidence 4789999999999999 66655
No 394
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.89 E-value=0.0039 Score=49.96 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 10 ~i~v~G~~~~GKSsli-~~l~~ 30 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLM-HRYVN 30 (182)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 5789999999999999 66654
No 395
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.89 E-value=0.0039 Score=49.26 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 5 ~i~v~G~~~~GKssli-~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIV-LRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhc
Confidence 4789999999999999 65554
No 396
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.88 E-value=0.0038 Score=49.43 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 5 ~i~v~G~~~~GKssli-~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLL-VRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHH-HHHHH
T ss_pred EEEEECcCCCCHHHHH-HHHHh
Confidence 4789999999999999 66655
No 397
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.87 E-value=0.0021 Score=57.60 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=17.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
++-++||.||+||||||+. +.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva-~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVK-HTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHH-HHHHH
T ss_pred CceEEEEECCCCCCHHHHH-HHHHH
Confidence 4568999999999999999 76655
No 398
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.87 E-value=0.0045 Score=54.92 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++|+|++|+|||||+ +.+.|.
T Consensus 5 kI~lvG~~nvGKSTL~-n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLF-NLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHH-HHHHCC
T ss_pred EEEEECCCCCCHHHHH-HHHHCC
Confidence 5899999999999999 888774
No 399
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.86 E-value=0.0041 Score=49.32 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 8 ~i~v~G~~~~GKssli-~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLV-LRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHH-HHHHH
T ss_pred EEEEECcCCCCHHHHH-HHHHc
Confidence 4789999999999999 66654
No 400
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.86 E-value=0.0053 Score=49.12 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+.-.++|+|+.|+|||||+ +.+.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~-~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLL-DAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHH-HHHHT
T ss_pred CCCEEEEECCCCCCHHHHH-HHHhC
Confidence 3457899999999999999 66655
No 401
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.82 E-value=0.0043 Score=48.96 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 5 ki~v~G~~~~GKssli-~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALT-VQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 4789999999999999 65554
No 402
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.82 E-value=0.0043 Score=49.63 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 9 ~i~v~G~~~~GKSsli-~~l~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLM-NRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 4789999999999999 66654
No 403
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.82 E-value=0.005 Score=54.52 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~g 101 (280)
.++.|.|++||||||+. +.|..
T Consensus 3 ~~I~l~G~~GsGKST~a-~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWA-REFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHH-HHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHH
Confidence 47899999999999999 76653
No 404
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.81 E-value=0.0053 Score=52.58 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.+..+.|+|+.||||||+. +.|+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a-~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA-PKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHH
Confidence 3457899999999999999 77754
No 405
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.80 E-value=0.0044 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.154 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 11 ~i~v~G~~~~GKssli-~~l~~ 31 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALT-IQFIQ 31 (181)
T ss_dssp EEEEEECTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 5789999999999999 66655
No 406
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.80 E-value=0.0047 Score=50.42 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 25 ~i~v~G~~~~GKSsli-~~l~~ 45 (195)
T 1svi_A 25 EIALAGRSNVGKSSFI-NSLIN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHH-HHHHT
T ss_pred EEEEECCCCCCHHHHH-HHHhC
Confidence 5889999999999999 66665
No 407
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.78 E-value=0.0048 Score=50.08 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 25 ~i~v~G~~~~GKSsli-~~l~~ 45 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLL-NALFN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHH-HHHHT
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 6889999999999999 66655
No 408
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.78 E-value=0.0044 Score=50.18 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 3 ki~v~G~~~~GKSsli-~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLI-YRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHH-HHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHhC
Confidence 3689999999999999 66665
No 409
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.78 E-value=0.012 Score=55.67 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=25.8
Q ss_pred cCCCEEEEeCcc-cHHHHHHHHHHHHhhcCCEEEEEEechh
Q 023563 154 DQVDVIGIDEAQ-FFEDLYDFCREAADHDGKTVIVAGLDGD 193 (280)
Q Consensus 154 ~~p~lLlLDEP~-~~~~i~~~l~~l~~~~g~tviivtHdl~ 193 (280)
.+.+++++||.. .....++.|.++... +..+++++-+-+
T Consensus 127 ~~~~~iiiDE~~~~~~~~~~~l~~~~~~-~~~~~~vGD~~Q 166 (459)
T 3upu_A 127 AKCRVLICDEVSMYDRKLFKILLSTIPP-WCTIIGIGDNKQ 166 (459)
T ss_dssp SSCSEEEESCGGGCCHHHHHHHHHHSCT-TCEEEEEECTTS
T ss_pred cCCCEEEEECchhCCHHHHHHHHHhccC-CCEEEEECCHHH
Confidence 468999999993 223455555555543 778888884443
No 410
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.77 E-value=0.006 Score=52.16 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=25.0
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhc-chhCCeeEE
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQA-ETQKGRNVA 110 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~g-l~~~g~~i~ 110 (280)
-+|.++.|.|+.||||||++ +.+.. +...|..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~-~~l~~~l~~~~~~v~ 38 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNR-DYLAERLRERGIEVQ 38 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHH-HHHHHHHHTTTCCEE
T ss_pred CCceEEEEEcCCCCCHHHHH-HHHHHHHHHcCCCcc
Confidence 46899999999999999999 66654 333444443
No 411
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.76 E-value=0.0049 Score=57.91 Aligned_cols=27 Identities=37% Similarity=0.346 Sum_probs=22.3
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.-.+..++.|+|++||||||+. +.+..
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla-~~L~~ 280 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFI-QEHLV 280 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHH-HHHTG
T ss_pred CCCCCEEEEEECCCCCCHHHHH-HHHHH
Confidence 3456789999999999999999 76654
No 412
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.74 E-value=0.0043 Score=53.73 Aligned_cols=26 Identities=31% Similarity=0.249 Sum_probs=18.9
Q ss_pred eeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 75 SPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 75 i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
..+|.++.|.||.||||||++ +.|..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~-~~l~~ 47 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHL-QWFCD 47 (227)
T ss_dssp -CCCCEEEEECCC---CHHHH-HHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 357899999999999999999 66654
No 413
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.72 E-value=0.0058 Score=50.08 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+.+++.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999444444
No 414
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.70 E-value=0.0051 Score=48.54 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 8 ~i~v~G~~~~GKssli-~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLV-LRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 4789999999999999 55554
No 415
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.70 E-value=0.0051 Score=49.96 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 9 ki~v~G~~~~GKSsli-~~l~~ 29 (208)
T 3clv_A 9 KTVLLGESSVGKSSIV-LRLTK 29 (208)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 4889999999999999 66655
No 416
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.70 E-value=0.0053 Score=56.44 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~g 101 (280)
.+++|.||+|||||||. +.|+.
T Consensus 8 ~lI~I~GptgSGKTtla-~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELS-IEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHH
T ss_pred ceEEEECCCcCcHHHHH-HHHHH
Confidence 48999999999999999 55543
No 417
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.68 E-value=0.0059 Score=48.86 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 8 ki~v~G~~~~GKssl~-~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLT-TCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHH-HHHHG
T ss_pred EEEEECcCCCCHHHHH-HHHHh
Confidence 4789999999999999 66655
No 418
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.68 E-value=0.0085 Score=50.19 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEec
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIK 113 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~ 113 (280)
-.++|+|+.|+|||||+ ..+.+......++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~-~~l~~~~~~~~~~~~i~ 64 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLI-ERTIERIGNEVKIGAML 64 (221)
T ss_dssp EEEEEEECTTSCHHHHH-HHHHHHHTTTSCEEEEE
T ss_pred eEEEEEcCCCCCHHHHH-HHHHHHhccCCeEEEEe
Confidence 47899999999999999 55554322224455444
No 419
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.68 E-value=0.0053 Score=49.55 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 6 ki~v~G~~~~GKSsli-~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALT-IQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 4789999999999999 66654
No 420
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.67 E-value=0.0052 Score=50.24 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 27 ki~v~G~~~~GKSsLi-~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLL-SRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHH-HHHHH
T ss_pred EEEEECcCCCCHHHHH-HHHhc
Confidence 4789999999999999 66655
No 421
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.66 E-value=0.0066 Score=55.80 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
++.++.|+||.|||||||. ..|+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa-~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLS-IDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHH-HHHHT
T ss_pred CCceEEEECCCCCCHHHHH-HHHHH
Confidence 5568999999999999999 55554
No 422
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.66 E-value=0.0053 Score=49.63 Aligned_cols=21 Identities=24% Similarity=0.263 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 13 ki~v~G~~~~GKSsli-~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVL-YQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhc
Confidence 5789999999999999 66654
No 423
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.66 E-value=0.0053 Score=49.85 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++|+|+.|+|||||+ +.+.|.
T Consensus 16 ki~vvG~~~~GKssL~-~~l~~~ 37 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNL-KWIYSK 37 (198)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHT
T ss_pred EEEEECCCCCCHHHHH-HHHHhh
Confidence 4689999999999999 888774
No 424
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.65 E-value=0.0055 Score=48.63 Aligned_cols=22 Identities=45% Similarity=0.398 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~g 101 (280)
-.++|+|+.|+|||||+ +.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~-~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTIL-YRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHH
T ss_pred cEEEEECCCCCCHHHHH-HHHhc
Confidence 35899999999999999 65544
No 425
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.63 E-value=0.0058 Score=52.59 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=22.0
Q ss_pred EeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 74 SSPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 74 ~i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
++++..++.|+||.||||+|.. +.|+.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa-~~L~~ 51 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQC-EKLVQ 51 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHH-HHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHH-HHHHH
Confidence 3456678999999999999999 66653
No 426
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.60 E-value=0.0056 Score=48.86 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 16 ~i~v~G~~~~GKssli-~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLI-TRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 4789999999999999 66654
No 427
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.59 E-value=0.006 Score=48.14 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhc
Q 023563 81 HVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 81 ~~liGpNGsGKSTLl~~~l~g 101 (280)
++|+|+.|+|||||+ +.+.+
T Consensus 3 i~~~G~~~~GKssl~-~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTIL-YKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHH-HHHHH
T ss_pred EEEECCCCCCHHHHH-HHHHc
Confidence 689999999999999 65544
No 428
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.58 E-value=0.0076 Score=51.77 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+|.+++|-|+.||||||++ +.|..
T Consensus 1 ~~~~i~~~G~~g~GKtt~~-~~l~~ 24 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFV-KLLTK 24 (241)
T ss_dssp CCEEEEEEECTTSSHHHHH-HHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH-HHHHH
Confidence 3678999999999999999 76654
No 429
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.57 E-value=0.007 Score=52.73 Aligned_cols=31 Identities=29% Similarity=0.343 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc-chhCCee
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA-ETQKGRN 108 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g-l~~~g~~ 108 (280)
+|.++.|.|++||||||++ +.|.. +...|..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~-~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAI-QVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHH-HHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHhcCCC
Confidence 6889999999999999999 66654 3334444
No 430
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.56 E-value=0.0061 Score=49.00 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 20 ki~v~G~~~~GKSsli-~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALT-LQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhh
Confidence 4789999999999999 66654
No 431
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.55 E-value=0.0062 Score=48.59 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 17 ~i~v~G~~~~GKSsli-~~l~~ 37 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLL-HQFTE 37 (179)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 4789999999999999 66654
No 432
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.54 E-value=0.029 Score=50.24 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=21.3
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
..+.-+.|.||+|+|||+++ +.+...
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA-r~i~~~ 48 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA-RALHAC 48 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH-HHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH-HHHHHh
Confidence 34556889999999999999 888763
No 433
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.54 E-value=0.0057 Score=50.68 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 25 ki~vvG~~~vGKSsLi-~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLA-GTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHH-HHTCC
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 5789999999999999 77765
No 434
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.0064 Score=48.72 Aligned_cols=21 Identities=33% Similarity=0.358 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 12 ~i~v~G~~~~GKssli-~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLL-VRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECcCCCCHHHHH-HHHHh
Confidence 5789999999999999 66654
No 435
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.51 E-value=0.0062 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=19.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+-+++|.|++||||||+. +.+..
T Consensus 3 ~~~i~i~G~~gsGkst~~-~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIA-KRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHH-HHHHH
T ss_pred ceEEEEECCCCCCHHHHH-HHHHH
Confidence 357899999999999999 77754
No 436
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.51 E-value=0.0065 Score=49.43 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++++|+.|+|||||+ +.+.+
T Consensus 23 ki~vvG~~~~GKSsli-~~l~~ 43 (190)
T 3con_A 23 KLVVVGAGGVGKSALT-IQLIQ 43 (190)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECcCCCCHHHHH-HHHHc
Confidence 4789999999999999 65654
No 437
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.50 E-value=0.0079 Score=51.49 Aligned_cols=24 Identities=33% Similarity=0.232 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+|.++.|-|+.||||||.+ +.+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~-~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTAR-NVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHH
Confidence 4889999999999999999 66654
No 438
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.50 E-value=0.02 Score=51.91 Aligned_cols=21 Identities=10% Similarity=0.013 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.+.|.||.|+||||++ +.++.
T Consensus 26 a~L~~G~~G~GKt~~a-~~la~ 46 (334)
T 1a5t_A 26 ALLIQALPGMGDDALI-YALSR 46 (334)
T ss_dssp EEEEECCTTSCHHHHH-HHHHH
T ss_pred eEEEECCCCchHHHHH-HHHHH
Confidence 4889999999999999 66655
No 439
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.48 E-value=0.0069 Score=48.58 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 14 ki~v~G~~~~GKSsli-~~l~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLV-LRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHH-HHHHH
T ss_pred EEEEECcCCCCHHHHH-HHHHc
Confidence 4789999999999999 66654
No 440
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.48 E-value=0.0072 Score=50.47 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 14 ~i~~~G~~g~GKTsl~-~~l~~ 34 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLL-TLLTT 34 (218)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhc
Confidence 5789999999999999 66655
No 441
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.48 E-value=0.0065 Score=49.05 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 12 ki~v~G~~~~GKSsli-~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLL-HQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 5789999999999999 66654
No 442
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.46 E-value=0.0068 Score=49.79 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 16 ki~v~G~~~~GKSsli-~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALT-LQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 4789999999999999 65554
No 443
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.45 E-value=0.0068 Score=49.29 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 9 ki~v~G~~~vGKSsli-~~l~~ 29 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALL-HVFAK 29 (184)
T ss_dssp EEEEEESTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhc
Confidence 4789999999999999 66654
No 444
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.44 E-value=0.0094 Score=51.50 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.7
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.+|.++.|.|+.||||||++ +.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~-~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQS-HLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 46889999999999999999 66654
No 445
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.44 E-value=0.0071 Score=49.80 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 10 ki~v~G~~~~GKSsli-~~l~~ 30 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLM-NQYVN 30 (207)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEECcCCCCHHHHH-HHHHc
Confidence 5789999999999999 66655
No 446
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.42 E-value=0.056 Score=52.97 Aligned_cols=32 Identities=9% Similarity=0.017 Sum_probs=24.3
Q ss_pred eeeEeeCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 71 ASVSSPSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 71 isl~i~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
+.+.+..+-.+.|.|..|||||+++..++..+
T Consensus 207 v~~DL~k~pHlLIaG~TGSGKS~~L~tlI~sL 238 (574)
T 2iut_A 207 IITDLAKMPHLLVAGTTGSGKSVGVNAMLLSI 238 (574)
T ss_dssp EEEEGGGSCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEhhhCCeeEEECCCCCCHHHHHHHHHHHH
Confidence 44566677789999999999999993334444
No 447
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.42 E-value=0.008 Score=54.89 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~g 101 (280)
.++.|+||+|||||||. +.|+.
T Consensus 6 ~~i~i~GptGsGKTtla-~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA-MALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHH-HHHHH
T ss_pred cEEEEECCCCCCHHHHH-HHHHH
Confidence 47899999999999999 66654
No 448
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.41 E-value=0.006 Score=53.22 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=21.3
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.++.+++|.|+.||||||++ +.|..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~-~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFV-NILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHH-TTTGG
T ss_pred cCceEEEEECCCCCCHHHHH-HHHHH
Confidence 56789999999999999999 77665
No 449
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.40 E-value=0.0083 Score=51.94 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++|+|+.|+|||||+ +.+.|.
T Consensus 24 ~I~lvG~~g~GKStl~-n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAG-NSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHH-HHHHTS
T ss_pred EEEEECCCCCCHHHHH-HHHhCC
Confidence 6899999999999999 767663
No 450
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.40 E-value=0.0088 Score=51.38 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.8
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
.+|.++.|-|+.||||||++ +.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~-~~l~~ 27 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQC-NILYK 27 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHH-HHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence 46899999999999999999 66655
No 451
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.39 E-value=0.0097 Score=54.23 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQ 100 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~ 100 (280)
+.+++|+||+|||||||. ..++
T Consensus 3 ~~~i~i~GptgsGKt~la-~~La 24 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTS-VMLA 24 (322)
T ss_dssp CEEEEEECCTTSCHHHHH-HHHH
T ss_pred CcEEEEECCCcCCHHHHH-HHHH
Confidence 458899999999999999 5444
No 452
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.37 E-value=0.0078 Score=48.41 Aligned_cols=21 Identities=33% Similarity=0.295 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 7 ~i~~~G~~~~GKssl~-~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLL-ISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 5789999999999999 65554
No 453
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.37 E-value=0.0076 Score=49.22 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 10 ki~vvG~~~~GKSsli-~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLV-LRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCcHHHHH-HHHHc
Confidence 5889999999999999 66654
No 454
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.37 E-value=0.013 Score=53.78 Aligned_cols=39 Identities=23% Similarity=0.190 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcchhCCeeEEEecCC
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQAETQKGRNVAVIKSN 115 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~gl~~~g~~i~~~~~~ 115 (280)
..-+++|+|+.|+|||||+.++...+...|.++..+..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 446899999999999999933333344567777666544
No 455
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.36 E-value=0.0078 Score=49.08 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 24 ki~vvG~~~~GKSsli-~~l~~ 44 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFL-FRYAD 44 (189)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 4789999999999999 66655
No 456
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.35 E-value=0.0079 Score=57.66 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=27.3
Q ss_pred eeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 67 LHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 67 vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
+++.+ +.+-+|+..+|+||+|+|||||+ +.+.+
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~-~~l~~ 173 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLI-QELIH 173 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHH-HHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHH-HHHHh
Confidence 45544 77889999999999999999999 65554
No 457
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.34 E-value=0.0078 Score=49.35 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 25 ki~vvG~~~~GKSsli-~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIV-CRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHH-HHHHH
T ss_pred EEEEECcCCCCHHHHH-HHHhc
Confidence 4789999999999999 66654
No 458
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.34 E-value=0.0081 Score=48.45 Aligned_cols=21 Identities=24% Similarity=0.158 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 20 ki~v~G~~~~GKSsl~-~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALT-IQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 4689999999999999 55554
No 459
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.33 E-value=0.0081 Score=48.93 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 18 ki~v~G~~~~GKSsli-~~l~~ 38 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLL-LRFAD 38 (196)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECcCCCCHHHHH-HHHHc
Confidence 4889999999999999 66655
No 460
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.31 E-value=0.0076 Score=49.17 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++|+|+.|+|||||+ +.+.+-
T Consensus 23 ki~v~G~~~~GKSsli-~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTII-NKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHH-HHTSCG
T ss_pred EEEEECCCCCCHHHHH-HHHhcC
Confidence 5789999999999999 777664
No 461
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.29 E-value=0.0088 Score=49.12 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 28 ki~vvG~~~~GKSsLi-~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLM-ERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHH-HHHCC
T ss_pred EEEEECCCCCCHHHHH-HHHhc
Confidence 4789999999999999 77765
No 462
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.28 E-value=0.0077 Score=55.91 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 023563 81 HVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 81 ~~liGpNGsGKSTLl~~~l~gl 102 (280)
++|+|++|+|||||+ +.+.+.
T Consensus 4 v~IVG~pnvGKSTL~-n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLF-NALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHH-HHHHHH
T ss_pred EEEECCCCCCHHHHH-HHHhCC
Confidence 789999999999999 877764
No 463
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.28 E-value=0.0094 Score=49.07 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 10 ki~v~G~~~~GKSsli-~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFL-FRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHH-HHHHT
T ss_pred EEEEECCCCCCHHHHH-HHHhc
Confidence 4789999999999999 66655
No 464
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.27 E-value=0.0096 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++|+|.+|+|||||+ +.+.|-
T Consensus 9 ~V~ivG~~nvGKSTLl-n~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLL-NNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHH-HHHHTS
T ss_pred EEEEECCCCCCHHHHH-HHHhCC
Confidence 6899999999999999 777764
No 465
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.26 E-value=0.0085 Score=48.22 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQ 100 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~ 100 (280)
.++|+|+.|+|||||+ +.+.
T Consensus 8 ki~~~G~~~~GKSsli-~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLT-IQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHH-HHHH
T ss_pred EEEEECcCCCCHHHHH-HHHH
Confidence 5789999999999999 5554
No 466
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.25 E-value=0.0094 Score=49.35 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 27 ki~v~G~~~~GKSsLi-~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLL-HQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHH-HHHHC
T ss_pred EEEEECcCCCCHHHHH-HHHHh
Confidence 4789999999999999 66655
No 467
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.23 E-value=0.01 Score=52.04 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++|+|+.|||||||+ +.+.|-
T Consensus 3 kI~lvG~~n~GKSTL~-n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLF-NALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHH-HHHHTT
T ss_pred EEEEECCCCCCHHHHH-HHHHCC
Confidence 5789999999999999 888774
No 468
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.22 E-value=0.018 Score=54.80 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=21.4
Q ss_pred eeEeeCceEEEEEcCCCCcHHHHHHH
Q 023563 72 SVSSPSGEIHVIVGPMFAGKTTTLLR 97 (280)
Q Consensus 72 sl~i~~Gei~~liGpNGsGKSTLl~~ 97 (280)
-.......+..|.|+-||||||++.+
T Consensus 155 ~~~~~~~~v~~I~G~aGsGKTt~I~~ 180 (446)
T 3vkw_A 155 EPHVSSAKVVLVDGVPGCGKTKEILS 180 (446)
T ss_dssp BCCCCCSEEEEEEECTTSCHHHHHHH
T ss_pred ccccccccEEEEEcCCCCCHHHHHHH
Confidence 44456778999999999999999933
No 469
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.22 E-value=0.0094 Score=48.57 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 22 ki~v~G~~~~GKSsli-~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLT-YRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 4789999999999999 65554
No 470
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.21 E-value=0.0092 Score=48.79 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 23 ki~v~G~~~~GKSsli-~~l~~ 43 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLL-LQFTD 43 (191)
T ss_dssp EEEEESSTTSSHHHHH-HHHHH
T ss_pred EEEEECcCCCCHHHHH-HHHhc
Confidence 4789999999999999 66654
No 471
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.21 E-value=0.0099 Score=48.33 Aligned_cols=22 Identities=41% Similarity=0.392 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~g 101 (280)
=.++|+|+.|+|||||+ +.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~-~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTIL-YQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHH-HHHHT
T ss_pred cEEEEECCCCCCHHHHH-HHHhc
Confidence 36799999999999999 66654
No 472
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.21 E-value=0.0088 Score=49.39 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 26 ki~vvG~~~~GKSsli-~~l~~ 46 (201)
T 3oes_A 26 KVVILGYRCVGKTSLA-HQFVE 46 (201)
T ss_dssp EEEEEESTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCcCHHHHH-HHHHh
Confidence 6789999999999999 66655
No 473
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.20 E-value=0.0091 Score=52.48 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++|+|++|+|||||+ +.|.+-
T Consensus 10 ~I~vvG~~g~GKSTLi-n~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLI-NSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHH-HHHSSS
T ss_pred EEEEECCCCCCHHHHH-HHHhCC
Confidence 4789999999999999 877653
No 474
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.20 E-value=0.009 Score=48.84 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++|+|+.|+|||||+ +.+.+-
T Consensus 25 ki~v~G~~~~GKSsli-~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFL-FRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHH
T ss_pred EEEEECCCCcCHHHHH-HHHhcC
Confidence 4689999999999999 666653
No 475
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.20 E-value=0.01 Score=48.44 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 19 ki~v~G~~~~GKSsl~-~~l~~ 39 (199)
T 4bas_A 19 QVVMCGLDNSGKTTII-NQVKP 39 (199)
T ss_dssp EEEEECCTTSCHHHHH-HHHSC
T ss_pred EEEEECCCCCCHHHHH-HHHhc
Confidence 5789999999999999 76665
No 476
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.19 E-value=0.0063 Score=50.93 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++|+|+.|+|||||+ +.+.+-
T Consensus 31 ~i~v~G~~~~GKSsli-n~l~~~ 52 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAI-NVLCNQ 52 (223)
T ss_dssp EEEEEESCHHHHHHHH-HHHTTC
T ss_pred EEEEEcCCCCCHHHHH-HHHhCC
Confidence 6789999999999999 777663
No 477
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.18 E-value=0.0091 Score=49.87 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 28 ki~lvG~~~vGKSsLi-~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLV-RRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHH-HHHHH
T ss_pred EEEEECcCCCCHHHHH-HHHHh
Confidence 4789999999999999 65544
No 478
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.16 E-value=0.0093 Score=49.30 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 10 ki~v~G~~~~GKSsli-~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLL-LRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhc
Confidence 5789999999999999 66655
No 479
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.14 E-value=0.011 Score=53.62 Aligned_cols=39 Identities=15% Similarity=0.035 Sum_probs=29.5
Q ss_pred EEeCCeeeeEeeeeEeeCceEEEEEcCCCCcHHHHHHHHH
Q 023563 60 FSLQNRNLHSEASVSSPSGEIHVIVGPMFAGKTTTLLRRI 99 (280)
Q Consensus 60 ~~y~~~~vl~~isl~i~~Gei~~liGpNGsGKSTLl~~~l 99 (280)
..|.....+++.-+.+ .|.-+.|.|++|+||||+.+.++
T Consensus 130 ~~la~~~~~H~~~v~~-~g~gvli~G~sG~GKStlal~l~ 168 (312)
T 1knx_A 130 EQFATVAQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 168 (312)
T ss_dssp HHTCCCEEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred HHhhhcceeEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 3445556788876666 47789999999999999994443
No 480
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.13 E-value=0.011 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~gl 102 (280)
-+++|+|+.|+|||||+ +.+.|-
T Consensus 11 g~v~ivG~~nvGKSTLi-n~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLL-NNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHTS
T ss_pred CEEEEECCCCCcHHHHH-HHHhCC
Confidence 38899999999999999 777764
No 481
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.13 E-value=0.015 Score=48.85 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~g 101 (280)
-.++|+|+.|+|||||+.+++.+
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47889999999999999444433
No 482
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.11 E-value=0.01 Score=48.65 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 30 ki~v~G~~~vGKSsli-~~l~~ 50 (196)
T 2atv_A 30 KLAIFGRAGVGKSALV-VRFLT 50 (196)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 5789999999999999 65554
No 483
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.11 E-value=0.0094 Score=48.30 Aligned_cols=21 Identities=43% Similarity=0.404 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 23 ~i~v~G~~~~GKSsli-~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTIL-YQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHH-HHHHT
T ss_pred EEEEECCCCCCHHHHH-HHHhc
Confidence 4689999999999999 66655
No 484
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.01 Score=48.10 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 17 ~i~v~G~~~~GKssli-~~l~~ 37 (195)
T 1x3s_A 17 KILIIGESGVGKSSLL-LRFTD 37 (195)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 5789999999999999 66654
No 485
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.09 E-value=0.011 Score=50.01 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 31 kI~vvG~~~vGKSsLi-n~l~~ 51 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFM-NIVSR 51 (228)
T ss_dssp EEEEECSTTSSHHHHH-HHHTT
T ss_pred EEEEECCCCCCHHHHH-HHHhC
Confidence 6789999999999999 76765
No 486
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.09 E-value=0.012 Score=50.02 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
++.|+||.||||+|.. +.|+.
T Consensus 2 ~Iil~GpPGsGKgTqa-~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA-KRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 5789999999999999 66654
No 487
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.09 E-value=0.011 Score=48.84 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 30 ki~v~G~~~~GKSsli-~~l~~ 50 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFL-MRLCK 50 (199)
T ss_dssp EEEEESSTTSSHHHHH-HHHHH
T ss_pred EEEEECcCCCCHHHHH-HHHHh
Confidence 5789999999999999 66654
No 488
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.08 E-value=0.011 Score=48.46 Aligned_cols=21 Identities=33% Similarity=0.292 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 25 ki~~vG~~~~GKSsl~-~~l~~ 45 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLL-LAFSK 45 (194)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECcCCCCHHHHH-HHHhc
Confidence 5789999999999999 66654
No 489
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.08 E-value=0.011 Score=48.35 Aligned_cols=21 Identities=33% Similarity=0.456 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 24 ki~v~G~~~~GKSsli-~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFV-NVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHc
Confidence 4789999999999999 66654
No 490
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.05 E-value=0.11 Score=49.40 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 77 SGEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 77 ~Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
...++.++|.+||||||+. +.+..
T Consensus 38 ~~~~IvlvGlpGsGKSTia-~~La~ 61 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYIS-KKLTR 61 (469)
T ss_dssp CCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred CcEEEEEECCCCCCHHHHH-HHHHH
Confidence 3457899999999999999 66654
No 491
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.05 E-value=0.011 Score=48.90 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 023563 79 EIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 79 ei~~liGpNGsGKSTLl~~~l~g 101 (280)
=.++|+|+.|+|||||+ +.+.+
T Consensus 21 ~~i~v~G~~~~GKSsli-~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLL-VRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHH-HHHHH
T ss_pred eEEEEECCCCCCHHHHH-HHHHh
Confidence 36899999999999999 66654
No 492
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.05 E-value=0.0084 Score=48.13 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 9 ki~~vG~~~vGKTsli-~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLI-HRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 4789999999999999 65554
No 493
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.04 E-value=0.011 Score=54.71 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhc
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~g 101 (280)
|-.++|+|.+|+|||||+ +.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~-n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLF-NALTK 24 (363)
T ss_dssp CCEEEEECCTTSSHHHHH-HHHHH
T ss_pred CCEEEEECCCCCCHHHHH-HHHHC
Confidence 346899999999999999 77776
No 494
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.04 E-value=0.013 Score=46.90 Aligned_cols=21 Identities=33% Similarity=0.245 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 10 ki~v~G~~~~GKssl~-~~~~~ 30 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLL-ISYTS 30 (182)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHhc
Confidence 5789999999999999 55554
No 495
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.03 E-value=0.012 Score=48.25 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 22 ki~~~G~~~~GKssl~-~~l~~ 42 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLV-VSYTT 42 (201)
T ss_dssp EEEEECSTTSSHHHHH-HHHHC
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 5889999999999999 66655
No 496
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.03 E-value=0.015 Score=52.95 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 023563 78 GEIHVIVGPMFAGKTTTLLRRIQ 100 (280)
Q Consensus 78 Gei~~liGpNGsGKSTLl~~~l~ 100 (280)
..+++|+||+|||||||. ..++
T Consensus 10 ~~~i~i~GptgsGKt~la-~~La 31 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALA-IELR 31 (316)
T ss_dssp CEEEEEECCTTSCHHHHH-HHHH
T ss_pred CcEEEEECCCccCHHHHH-HHHH
Confidence 458899999999999999 5454
No 497
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.02 E-value=0.012 Score=48.42 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQA 101 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~g 101 (280)
.++|+|+.|+|||||+ +.+.+
T Consensus 22 ki~~vG~~~vGKTsLi-~~l~~ 42 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQ-KVVFH 42 (196)
T ss_dssp EEEEEESTTSSHHHHH-HHHHS
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 4789999999999999 76666
No 498
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.01 E-value=0.082 Score=53.04 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=21.6
Q ss_pred eCceEEEEEcCCCCcHHHHHHHHHhcc
Q 023563 76 PSGEIHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 76 ~~Gei~~liGpNGsGKSTLl~~~l~gl 102 (280)
..+.-+.|+||.|+||||++ +.++..
T Consensus 205 ~~~~~vlL~G~~GtGKT~la-~~la~~ 230 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIA-EGLAWR 230 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHH-HHHHHH
Confidence 35667899999999999999 777764
No 499
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.01 E-value=0.013 Score=48.88 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++|+|+.|+|||||+ +.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi-~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFL-YRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHH-HHHHCS
T ss_pred EEEEECcCCCCHHHHH-HHHhcC
Confidence 4789999999999999 766653
No 500
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.01 E-value=0.013 Score=51.26 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 023563 80 IHVIVGPMFAGKTTTLLRRIQAE 102 (280)
Q Consensus 80 i~~liGpNGsGKSTLl~~~l~gl 102 (280)
.++|+|+.|+|||||+ +.+.|-
T Consensus 7 kI~lvG~~nvGKTsL~-n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLF-NALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHH-HHHHTT
T ss_pred EEEEECCCCCCHHHHH-HHHHCC
Confidence 5899999999999999 777763
Done!