Query 023564
Match_columns 280
No_of_seqs 187 out of 463
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 08:59:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cf7_A Protein (transcription 100.0 2.7E-30 9.2E-35 198.2 6.1 73 123-195 2-75 (76)
2 2aze_B Transcription factor E2 99.8 1.9E-20 6.6E-25 151.4 4.3 75 202-276 4-96 (106)
3 1cf7_B Protein (transcription 99.4 1.4E-13 4.8E-18 109.9 4.2 65 130-197 9-92 (95)
4 2xvc_A ESCRT-III, SSO0910; cel 93.8 0.047 1.6E-06 40.1 3.3 44 138-182 13-56 (59)
5 1qgp_A Protein (double strande 93.4 0.083 2.8E-06 39.3 4.2 55 138-192 17-72 (77)
6 1oyi_A Double-stranded RNA-bin 92.8 0.11 3.7E-06 40.1 4.2 61 130-193 12-72 (82)
7 2heo_A Z-DNA binding protein 1 92.5 0.14 4.7E-06 36.9 4.2 51 136-187 11-61 (67)
8 3deu_A Transcriptional regulat 92.5 0.96 3.3E-05 36.5 9.8 37 149-185 66-102 (166)
9 1qbj_A Protein (double-strande 92.4 0.13 4.5E-06 39.0 4.2 57 136-192 11-68 (81)
10 3r0a_A Putative transcriptiona 92.3 0.46 1.6E-05 37.4 7.4 47 138-184 29-75 (123)
11 1r7j_A Conserved hypothetical 92.0 0.39 1.3E-05 36.8 6.5 46 135-184 8-53 (95)
12 3eco_A MEPR; mutlidrug efflux 91.1 0.96 3.3E-05 34.5 7.9 47 138-184 34-80 (139)
13 2oqg_A Possible transcriptiona 91.0 0.54 1.8E-05 35.2 6.2 47 139-188 25-71 (114)
14 3jw4_A Transcriptional regulat 90.9 1.5 5E-05 34.0 8.9 46 140-185 46-91 (148)
15 1ku9_A Hypothetical protein MJ 90.2 2.9 0.0001 31.6 9.9 55 139-194 30-87 (152)
16 2htj_A P fimbrial regulatory p 89.8 0.45 1.5E-05 34.5 4.7 43 139-183 4-46 (81)
17 3qph_A TRMB, A global transcri 89.4 0.16 5.3E-06 47.3 2.4 52 140-194 24-75 (342)
18 2a61_A Transcriptional regulat 88.7 1.3 4.5E-05 33.8 7.0 44 140-185 38-81 (145)
19 2gxg_A 146AA long hypothetical 88.7 1.2 4.2E-05 34.0 6.8 37 149-185 48-84 (146)
20 3cuo_A Uncharacterized HTH-typ 86.3 1.6 5.6E-05 31.5 5.9 46 140-187 29-74 (99)
21 1sfx_A Conserved hypothetical 86.3 0.68 2.3E-05 33.6 3.8 45 139-185 24-68 (109)
22 2y75_A HTH-type transcriptiona 85.8 0.88 3E-05 35.5 4.5 48 137-184 11-59 (129)
23 2fa5_A Transcriptional regulat 85.6 4.9 0.00017 31.3 8.8 37 149-185 61-97 (162)
24 1s3j_A YUSO protein; structura 85.5 1.8 6.2E-05 33.5 6.1 36 150-185 50-85 (155)
25 2kko_A Possible transcriptiona 85.3 1.4 4.8E-05 33.6 5.3 39 150-188 37-75 (108)
26 3bj6_A Transcriptional regulat 85.2 3.3 0.00011 31.8 7.5 36 150-185 53-88 (152)
27 4b8x_A SCO5413, possible MARR- 85.1 2.9 9.9E-05 33.1 7.3 45 141-185 41-85 (147)
28 3bpv_A Transcriptional regulat 85.1 2.9 0.0001 31.5 7.0 43 140-184 34-76 (138)
29 3bro_A Transcriptional regulat 85.1 0.74 2.5E-05 35.1 3.6 47 139-185 38-84 (141)
30 3u2r_A Regulatory protein MARR 84.8 1.4 4.8E-05 35.1 5.3 46 140-185 51-96 (168)
31 2eth_A Transcriptional regulat 84.7 5.8 0.0002 30.8 8.8 34 151-184 58-91 (154)
32 1y0u_A Arsenical resistance op 84.7 0.67 2.3E-05 34.4 3.1 47 140-191 36-82 (96)
33 2hr3_A Probable transcriptiona 84.7 1.8 6.1E-05 33.2 5.7 46 139-185 39-84 (147)
34 3g3z_A NMB1585, transcriptiona 84.7 3.8 0.00013 31.4 7.6 35 151-185 45-79 (145)
35 2d1h_A ST1889, 109AA long hypo 84.6 0.62 2.1E-05 33.9 2.9 38 149-186 34-71 (109)
36 2frh_A SARA, staphylococcal ac 84.5 1.4 4.6E-05 34.2 5.0 45 140-184 42-86 (127)
37 2qww_A Transcriptional regulat 84.3 6 0.00021 30.5 8.7 42 140-183 46-87 (154)
38 1on2_A Transcriptional regulat 84.3 1.2 4.1E-05 34.7 4.6 36 150-185 21-56 (142)
39 3nrv_A Putative transcriptiona 83.9 5.7 0.00019 30.4 8.3 45 139-185 44-88 (148)
40 2fu4_A Ferric uptake regulatio 83.8 0.58 2E-05 33.7 2.4 47 139-185 21-72 (83)
41 3s2w_A Transcriptional regulat 83.8 9.3 0.00032 29.8 9.7 37 149-185 62-98 (159)
42 1lj9_A Transcriptional regulat 83.5 4.1 0.00014 31.0 7.3 44 140-185 34-77 (144)
43 3oop_A LIN2960 protein; protei 83.3 6.9 0.00024 29.8 8.5 44 140-185 42-85 (143)
44 3jth_A Transcription activator 83.1 2.1 7.1E-05 31.5 5.3 38 150-187 35-72 (98)
45 3tgn_A ADC operon repressor AD 82.9 2.6 8.8E-05 32.2 5.9 44 139-185 42-85 (146)
46 2x4h_A Hypothetical protein SS 82.4 1.5 5.1E-05 33.9 4.4 38 148-185 28-65 (139)
47 1r1u_A CZRA, repressor protein 82.3 1.6 5.4E-05 33.0 4.4 46 139-187 30-75 (106)
48 2fbh_A Transcriptional regulat 82.3 5.9 0.0002 30.0 7.7 38 148-185 49-86 (146)
49 3cjn_A Transcriptional regulat 82.2 8.5 0.00029 30.0 8.9 36 149-184 64-99 (162)
50 2bv6_A MGRA, HTH-type transcri 81.7 0.55 1.9E-05 36.0 1.7 37 149-185 49-85 (142)
51 3boq_A Transcriptional regulat 81.4 7.5 0.00026 30.1 8.2 37 149-185 60-96 (160)
52 2lkp_A Transcriptional regulat 81.2 2.8 9.7E-05 31.8 5.6 36 150-185 44-79 (119)
53 3f6o_A Probable transcriptiona 81.2 1.6 5.3E-05 33.7 4.1 50 139-191 22-71 (118)
54 3k0l_A Repressor protein; heli 81.0 2.6 9E-05 33.2 5.5 37 149-185 58-94 (162)
55 1ub9_A Hypothetical protein PH 80.2 3.9 0.00013 29.4 5.8 44 140-185 21-64 (100)
56 1j5y_A Transcriptional regulat 80.2 1.6 5.6E-05 36.4 4.2 54 138-193 24-78 (187)
57 3e6m_A MARR family transcripti 80.1 10 0.00035 29.8 8.6 36 150-185 66-101 (161)
58 1u2w_A CADC repressor, cadmium 80.0 3 0.0001 32.4 5.4 46 140-187 47-92 (122)
59 3bja_A Transcriptional regulat 79.9 16 0.00056 27.2 10.1 43 140-184 38-80 (139)
60 2fbi_A Probable transcriptiona 79.8 4 0.00014 30.8 6.0 36 150-185 49-84 (142)
61 1a93_B MAX protein, coiled coi 79.5 2.8 9.6E-05 27.7 4.2 30 201-230 4-33 (34)
62 3bdd_A Regulatory protein MARR 79.4 5 0.00017 30.2 6.4 36 150-185 44-79 (142)
63 2p4w_A Transcriptional regulat 79.1 13 0.00045 31.8 9.7 43 140-185 20-62 (202)
64 3rkx_A Biotin-[acetyl-COA-carb 79.0 1.7 5.9E-05 40.0 4.3 57 137-193 5-62 (323)
65 3mq0_A Transcriptional repress 78.9 2.5 8.6E-05 37.5 5.2 53 139-193 34-86 (275)
66 3ech_A MEXR, multidrug resista 78.9 13 0.00044 28.3 8.7 44 140-185 42-85 (142)
67 4hbl_A Transcriptional regulat 78.6 13 0.00045 28.7 8.8 36 150-185 54-89 (149)
68 3pqk_A Biofilm growth-associat 78.4 2.9 0.0001 31.0 4.7 45 140-187 28-72 (102)
69 2nyx_A Probable transcriptiona 78.2 3 0.0001 33.3 5.0 35 150-184 58-92 (168)
70 2rdp_A Putative transcriptiona 78.1 14 0.00047 28.2 8.7 35 150-184 55-89 (150)
71 2fbk_A Transcriptional regulat 78.0 8.4 0.00029 31.0 7.7 36 150-185 85-120 (181)
72 2pg4_A Uncharacterized protein 77.5 1.9 6.4E-05 31.7 3.4 52 130-182 8-62 (95)
73 3ihu_A Transcriptional regulat 77.5 5.4 0.00018 33.6 6.6 56 131-186 15-74 (222)
74 3hsr_A HTH-type transcriptiona 77.1 1.3 4.4E-05 34.2 2.5 38 148-185 47-84 (140)
75 1fxk_C Protein (prefoldin); ar 76.4 5.5 0.00019 31.6 6.1 51 188-238 72-129 (133)
76 1tbx_A ORF F-93, hypothetical 76.2 6.5 0.00022 28.7 6.1 39 149-187 20-62 (99)
77 2xrn_A HTH-type transcriptiona 76.0 8.5 0.00029 33.2 7.6 54 139-193 10-63 (241)
78 3mkl_A HTH-type transcriptiona 75.5 2.3 7.8E-05 32.6 3.5 39 136-174 8-46 (120)
79 2jt1_A PEFI protein; solution 75.4 2.4 8.4E-05 31.7 3.5 55 138-192 7-68 (77)
80 2hzt_A Putative HTH-type trans 75.2 1.5 5.3E-05 33.2 2.4 37 149-185 25-62 (107)
81 1sfu_A 34L protein; protein/Z- 75.1 4.6 0.00016 30.7 5.0 61 130-192 10-70 (75)
82 3oou_A LIN2118 protein; protei 74.7 2.2 7.6E-05 32.0 3.2 43 136-178 6-48 (108)
83 2cfx_A HTH-type transcriptiona 74.3 2.5 8.6E-05 33.5 3.5 47 136-184 6-52 (144)
84 3oio_A Transcriptional regulat 74.3 2.9 0.0001 31.6 3.8 43 135-177 7-49 (113)
85 3gpv_A Transcriptional regulat 74.2 10 0.00034 31.0 7.2 38 151-192 16-55 (148)
86 2ek5_A Predicted transcription 74.2 12 0.0004 29.8 7.5 52 136-187 9-64 (129)
87 3nqo_A MARR-family transcripti 74.2 2.1 7.1E-05 35.3 3.1 47 139-185 45-91 (189)
88 3pfi_A Holliday junction ATP-d 73.5 2.7 9.1E-05 36.9 3.8 55 133-187 261-316 (338)
89 3fm5_A Transcriptional regulat 73.1 2.3 7.8E-05 33.0 2.9 43 142-185 46-88 (150)
90 1p6r_A Penicillinase repressor 73.1 2.9 9.9E-05 29.9 3.3 46 138-185 12-61 (82)
91 3kp7_A Transcriptional regulat 72.8 15 0.00051 28.3 7.6 37 148-184 48-84 (151)
92 2dk5_A DNA-directed RNA polyme 72.0 3.9 0.00013 31.2 4.0 47 138-184 23-69 (91)
93 4ham_A LMO2241 protein; struct 71.9 14 0.00047 29.1 7.3 50 136-185 19-72 (134)
94 3mn2_A Probable ARAC family tr 71.6 3.2 0.00011 31.0 3.3 42 136-177 3-44 (108)
95 2fsw_A PG_0823 protein; alpha- 71.5 3.4 0.00011 31.2 3.5 57 126-185 12-73 (107)
96 3f3x_A Transcriptional regulat 71.4 2.7 9.3E-05 32.2 3.0 44 139-185 41-84 (144)
97 1i1g_A Transcriptional regulat 70.9 3.5 0.00012 32.0 3.6 45 138-184 7-51 (141)
98 2nnn_A Probable transcriptiona 70.9 2.5 8.7E-05 31.8 2.7 35 150-184 51-85 (140)
99 2o0y_A Transcriptional regulat 70.6 3.2 0.00011 36.3 3.7 39 149-187 36-74 (260)
100 3by6_A Predicted transcription 70.3 12 0.00042 29.4 6.7 52 136-187 16-71 (126)
101 2cg4_A Regulatory protein ASNC 70.1 3.2 0.00011 33.0 3.3 49 134-184 7-55 (152)
102 1r1t_A Transcriptional repress 70.0 5.2 0.00018 31.3 4.4 38 150-187 58-95 (122)
103 2f2e_A PA1607; transcription f 69.8 1.7 5.9E-05 35.1 1.6 57 126-185 11-71 (146)
104 2wte_A CSA3; antiviral protein 69.6 4 0.00014 36.1 4.1 51 135-187 152-202 (244)
105 1z7u_A Hypothetical protein EF 69.6 3 0.0001 31.8 2.9 36 150-185 34-70 (112)
106 4aik_A Transcriptional regulat 69.1 25 0.00086 27.8 8.4 43 142-185 38-80 (151)
107 3cdh_A Transcriptional regulat 68.9 4.4 0.00015 31.4 3.7 38 148-185 54-91 (155)
108 2jsc_A Transcriptional regulat 68.9 2.3 7.9E-05 32.9 2.1 44 139-185 25-68 (118)
109 2dbb_A Putative HTH-type trans 68.8 3.3 0.00011 32.8 3.0 50 133-184 7-56 (151)
110 1ylf_A RRF2 family protein; st 68.8 4.8 0.00016 32.5 4.0 47 138-184 17-63 (149)
111 1mkm_A ICLR transcriptional re 68.4 4.9 0.00017 34.8 4.3 45 139-184 12-56 (249)
112 2w25_A Probable transcriptiona 68.4 4.1 0.00014 32.3 3.5 48 135-184 7-54 (150)
113 2cyy_A Putative HTH-type trans 68.1 4 0.00014 32.5 3.4 49 134-184 6-54 (151)
114 2k02_A Ferrous iron transport 67.8 3.8 0.00013 31.5 3.1 46 138-185 5-50 (87)
115 3sxy_A Transcriptional regulat 67.8 7.9 0.00027 32.4 5.4 52 136-187 17-71 (218)
116 3hh0_A Transcriptional regulat 67.7 19 0.00063 29.4 7.4 37 151-191 4-42 (146)
117 3lsg_A Two-component response 67.5 4.2 0.00014 30.1 3.2 42 136-177 3-45 (103)
118 1xn7_A Hypothetical protein YH 67.5 3.4 0.00012 30.9 2.7 45 138-184 5-49 (78)
119 2ip2_A Probable phenazine-spec 67.4 2.9 0.0001 36.8 2.7 42 150-191 40-81 (334)
120 2p5v_A Transcriptional regulat 67.4 4.1 0.00014 32.8 3.4 50 133-184 8-57 (162)
121 1yyv_A Putative transcriptiona 67.1 3.8 0.00013 32.7 3.1 60 126-185 22-83 (131)
122 3i53_A O-methyltransferase; CO 66.6 3 0.0001 36.9 2.6 50 140-192 30-79 (332)
123 3k69_A Putative transcription 66.5 5.7 0.00019 32.9 4.2 48 137-184 14-61 (162)
124 1bl0_A Protein (multiple antib 65.7 3.7 0.00013 31.9 2.7 43 135-177 11-53 (129)
125 3r4k_A Transcriptional regulat 65.3 6 0.0002 34.7 4.3 47 149-195 19-65 (260)
126 2k9s_A Arabinose operon regula 64.6 6 0.00021 29.5 3.6 41 136-176 4-45 (107)
127 3tqn_A Transcriptional regulat 64.3 11 0.00037 29.0 5.1 53 135-187 13-69 (113)
128 2pn6_A ST1022, 150AA long hypo 64.1 4.5 0.00016 31.9 3.0 45 138-184 6-50 (150)
129 1v4r_A Transcriptional repress 64.0 11 0.00038 28.0 5.1 55 133-187 13-71 (102)
130 3f6v_A Possible transcriptiona 64.0 8.5 0.00029 31.4 4.7 51 139-192 62-112 (151)
131 3neu_A LIN1836 protein; struct 63.8 16 0.00054 28.6 6.1 53 135-187 17-73 (125)
132 3c7j_A Transcriptional regulat 63.7 15 0.00052 31.6 6.5 51 136-186 31-84 (237)
133 2qlz_A Transcription factor PF 63.7 8 0.00027 34.2 4.8 42 139-183 16-57 (232)
134 2vn2_A DNAD, chromosome replic 63.6 4.4 0.00015 32.1 2.8 37 150-186 50-86 (128)
135 2zdi_C Prefoldin subunit alpha 62.8 21 0.00071 29.1 6.9 52 187-238 81-139 (151)
136 1z91_A Organic hydroperoxide r 62.8 4.3 0.00015 31.0 2.6 36 150-185 53-88 (147)
137 3gwz_A MMCR; methyltransferase 62.6 3.9 0.00014 37.1 2.7 44 148-191 68-112 (369)
138 2g7u_A Transcriptional regulat 62.5 7.6 0.00026 33.8 4.4 48 138-185 14-63 (257)
139 2r3s_A Uncharacterized protein 62.2 3.7 0.00013 35.8 2.4 41 149-190 37-77 (335)
140 2ia0_A Putative HTH-type trans 62.1 5.8 0.0002 32.7 3.4 50 133-184 15-64 (171)
141 2h09_A Transcriptional regulat 62.1 9.3 0.00032 30.0 4.5 37 150-186 53-89 (155)
142 1xmk_A Double-stranded RNA-spe 61.2 17 0.00058 27.3 5.5 57 134-192 10-67 (79)
143 3he5_B Synzip2; heterodimeric 60.9 27 0.00092 24.4 6.0 37 203-239 9-45 (52)
144 1qzz_A RDMB, aclacinomycin-10- 60.9 4.3 0.00015 36.2 2.5 49 140-191 41-91 (374)
145 4fx0_A Probable transcriptiona 60.8 10 0.00034 30.1 4.5 36 149-184 50-85 (148)
146 2e1c_A Putative HTH-type trans 60.6 6.8 0.00023 32.4 3.6 50 133-184 25-74 (171)
147 2pex_A Transcriptional regulat 60.5 3.4 0.00012 32.0 1.6 37 149-185 59-95 (153)
148 1okr_A MECI, methicillin resis 59.9 5.4 0.00019 30.0 2.6 46 138-185 13-62 (123)
149 2zqm_A Prefoldin beta subunit 59.9 31 0.0011 26.2 7.1 75 160-238 31-111 (117)
150 3lst_A CALO1 methyltransferase 59.3 4.2 0.00014 36.4 2.2 43 148-191 52-94 (348)
151 1uly_A Hypothetical protein PH 59.0 45 0.0016 28.1 8.5 44 138-184 23-66 (192)
152 1q1h_A TFE, transcription fact 58.9 5.3 0.00018 30.0 2.4 37 148-184 30-66 (110)
153 4a5n_A Uncharacterized HTH-typ 58.7 7 0.00024 31.6 3.2 59 126-185 13-74 (131)
154 2ia2_A Putative transcriptiona 58.6 9.1 0.00031 33.5 4.2 45 149-195 34-78 (265)
155 3gp4_A Transcriptional regulat 58.3 25 0.00087 28.4 6.6 36 152-191 3-40 (142)
156 2wt7_A Proto-oncogene protein 58.3 25 0.00087 25.0 5.8 34 205-238 24-57 (63)
157 1jgs_A Multiple antibiotic res 56.6 3.2 0.00011 31.3 0.9 35 150-184 47-81 (138)
158 1z4h_A TORI, TOR inhibition pr 55.4 5.6 0.00019 28.0 1.9 26 148-173 7-32 (66)
159 1tw3_A COMT, carminomycin 4-O- 54.8 6.4 0.00022 35.0 2.6 44 149-192 50-93 (360)
160 2b0l_A GTP-sensing transcripti 54.8 5.6 0.00019 30.6 1.9 39 147-185 38-77 (102)
161 3df8_A Possible HXLR family tr 54.5 5.7 0.0002 30.5 2.0 54 130-186 18-78 (111)
162 3t8r_A Staphylococcus aureus C 54.3 15 0.0005 29.6 4.5 48 137-184 13-61 (143)
163 1hsj_A Fusion protein consisti 53.6 7.9 0.00027 35.8 3.1 46 140-185 409-454 (487)
164 1wi9_A Protein C20ORF116 homol 53.5 14 0.00048 27.9 3.9 56 136-193 8-65 (72)
165 2qvo_A Uncharacterized protein 53.0 8.6 0.00029 28.2 2.7 36 148-183 27-62 (95)
166 1fxk_A Prefoldin; archaeal pro 52.3 46 0.0016 24.9 6.8 72 160-236 26-104 (107)
167 1x19_A CRTF-related protein; m 51.9 8.1 0.00028 34.5 2.8 42 149-191 62-103 (359)
168 1r8e_A Multidrug-efflux transp 51.8 60 0.002 27.8 8.2 84 149-239 3-107 (278)
169 3k2z_A LEXA repressor; winged 51.6 7.7 0.00026 32.4 2.4 39 147-185 20-58 (196)
170 3dcf_A Transcriptional regulat 51.3 11 0.00037 29.5 3.2 42 129-170 29-70 (218)
171 2v79_A DNA replication protein 51.3 7.4 0.00025 31.6 2.2 40 145-184 45-84 (135)
172 3i4p_A Transcriptional regulat 51.3 11 0.00037 30.6 3.2 46 137-184 5-50 (162)
173 1bia_A BIRA bifunctional prote 50.9 11 0.00039 34.1 3.7 53 138-192 8-61 (321)
174 1t2k_D Cyclic-AMP-dependent tr 50.8 40 0.0014 23.6 5.8 34 205-238 23-56 (61)
175 2qko_A Possible transcriptiona 50.5 12 0.00042 29.7 3.4 42 129-170 26-67 (215)
176 2o03_A Probable zinc uptake re 50.5 16 0.00054 28.7 4.0 46 140-186 16-66 (131)
177 3ic7_A Putative transcriptiona 50.2 6.5 0.00022 31.0 1.7 52 136-187 16-71 (126)
178 1p4x_A Staphylococcal accessor 49.8 11 0.00037 33.3 3.3 45 141-185 164-208 (250)
179 2jn6_A Protein CGL2762, transp 49.6 5.3 0.00018 29.4 1.0 30 151-180 23-52 (97)
180 3bvo_A CO-chaperone protein HS 49.0 62 0.0021 28.0 7.9 98 129-238 55-175 (207)
181 3m91_A Proteasome-associated A 48.2 54 0.0018 23.0 6.0 38 203-240 8-45 (51)
182 3dp7_A SAM-dependent methyltra 48.0 9.3 0.00032 34.5 2.6 36 149-184 48-83 (363)
183 1mzb_A Ferric uptake regulatio 47.9 13 0.00046 29.3 3.2 47 139-185 22-73 (136)
184 2wuj_A Septum site-determining 46.8 10 0.00034 26.8 2.1 41 191-234 17-57 (57)
185 1j9i_A GPNU1 DBD;, terminase s 46.8 12 0.0004 26.3 2.4 40 151-193 2-43 (68)
186 3b73_A PHIH1 repressor-like pr 46.8 13 0.00045 29.3 3.0 52 134-187 12-65 (111)
187 2yy0_A C-MYC-binding protein; 46.7 43 0.0015 23.5 5.3 32 204-235 19-50 (53)
188 1jnm_A Proto-oncogene C-JUN; B 46.3 42 0.0014 23.7 5.3 34 205-238 23-56 (62)
189 2kfs_A Conserved hypothetical 45.9 9.4 0.00032 32.3 2.1 26 148-173 28-53 (148)
190 3gbg_A TCP pilus virulence reg 45.9 16 0.00055 31.0 3.6 38 136-173 170-207 (276)
191 1ci6_A Transcription factor AT 45.6 53 0.0018 23.4 5.8 32 206-237 25-56 (63)
192 1fp2_A Isoflavone O-methyltran 45.5 12 0.00041 33.4 2.8 50 141-191 42-96 (352)
193 2g9w_A Conserved hypothetical 45.1 18 0.00061 28.3 3.5 47 138-185 12-62 (138)
194 2hs5_A Putative transcriptiona 44.3 12 0.00041 32.2 2.6 49 138-186 35-86 (239)
195 1hw1_A FADR, fatty acid metabo 44.2 12 0.00041 31.5 2.5 50 136-185 12-65 (239)
196 3fiw_A Putative TETR-family tr 43.9 16 0.00054 30.2 3.2 46 127-172 21-66 (211)
197 3bni_A Putative TETR-family tr 43.6 10 0.00034 30.9 1.9 43 129-171 41-83 (229)
198 3lwf_A LIN1550 protein, putati 43.4 17 0.00058 30.1 3.3 49 136-184 28-77 (159)
199 1nkp_B MAX protein, MYC proto- 43.2 37 0.0013 25.0 4.9 35 204-238 47-81 (83)
200 2xdj_A Uncharacterized protein 43.0 60 0.002 24.7 6.0 40 202-241 25-64 (83)
201 1q06_A Transcriptional regulat 42.8 1E+02 0.0034 24.4 7.7 81 152-239 1-107 (135)
202 2k4b_A Transcriptional regulat 42.6 14 0.00049 28.4 2.5 44 140-185 40-87 (99)
203 3q8t_A Beclin-1; autophagy, AT 42.4 55 0.0019 25.3 5.9 35 207-241 21-55 (96)
204 3hho_A CO-chaperone protein HS 42.2 1E+02 0.0034 25.7 8.0 96 133-240 20-142 (174)
205 2esh_A Conserved hypothetical 42.0 1.1E+02 0.0039 23.2 8.1 41 141-184 19-68 (118)
206 1r8d_A Transcription activator 41.1 72 0.0025 24.1 6.3 36 152-191 3-40 (109)
207 3gp4_A Transcriptional regulat 41.0 46 0.0016 26.8 5.5 37 202-238 86-122 (142)
208 2zqm_A Prefoldin beta subunit 40.5 63 0.0022 24.4 6.0 34 206-239 72-105 (117)
209 2di3_A Bacterial regulatory pr 40.5 15 0.0005 31.2 2.5 46 138-183 11-60 (239)
210 3qqa_A CMER; alpha-helical, he 39.8 9.1 0.00031 30.0 1.0 45 126-170 14-58 (216)
211 3mcz_A O-methyltransferase; ad 39.8 16 0.00055 32.2 2.7 39 151-190 56-94 (352)
212 1xd7_A YWNA; structural genomi 39.7 35 0.0012 27.1 4.5 48 135-184 9-56 (145)
213 1fxk_A Prefoldin; archaeal pro 39.6 59 0.002 24.3 5.6 22 216-237 77-98 (107)
214 2pjp_A Selenocysteine-specific 39.2 30 0.001 26.8 4.0 55 133-189 64-118 (121)
215 2yko_A LINE-1 ORF1P; RNA-bindi 38.9 45 0.0015 30.1 5.5 42 199-240 8-49 (233)
216 1p4x_A Staphylococcal accessor 38.9 26 0.00089 30.8 4.0 45 140-184 39-83 (250)
217 2qc0_A Uncharacterized protein 38.7 20 0.0007 33.2 3.4 37 150-186 310-346 (373)
218 4dzn_A Coiled-coil peptide CC- 38.0 72 0.0025 20.4 4.8 27 206-232 4-30 (33)
219 2obp_A Putative DNA-binding pr 38.0 17 0.0006 28.2 2.4 38 147-184 32-69 (96)
220 1d5y_A ROB transcription facto 37.7 16 0.00055 31.2 2.4 41 136-176 4-44 (292)
221 3e6c_C CPRK, cyclic nucleotide 37.6 27 0.00093 28.9 3.7 40 151-191 177-216 (250)
222 3viq_B Mating-type switching p 37.2 32 0.0011 26.7 3.7 29 207-235 4-32 (85)
223 4etp_A Kinesin-like protein KA 37.1 34 0.0012 32.4 4.7 31 207-237 6-36 (403)
224 3nmd_A CGMP dependent protein 37.0 80 0.0027 23.8 5.8 12 222-233 51-62 (72)
225 1umq_A Photosynthetic apparatu 36.4 61 0.0021 24.2 5.1 41 131-173 36-76 (81)
226 1fp1_D Isoliquiritigenin 2'-O- 36.2 16 0.00054 33.0 2.1 34 151-184 62-101 (372)
227 3hrs_A Metalloregulator SCAR; 35.9 25 0.00084 29.9 3.2 40 147-186 16-55 (214)
228 2fe3_A Peroxide operon regulat 35.9 31 0.0011 27.5 3.6 46 140-186 27-77 (145)
229 1zg3_A Isoflavanone 4'-O-methy 35.9 17 0.00059 32.4 2.3 44 140-184 35-81 (358)
230 1ci6_A Transcription factor AT 35.7 87 0.003 22.3 5.7 35 202-236 28-62 (63)
231 2fxa_A Protease production reg 35.6 10 0.00034 31.9 0.7 36 150-185 61-96 (207)
232 1tc3_C Protein (TC3 transposas 35.4 14 0.00049 22.4 1.3 27 152-178 22-48 (51)
233 1jko_C HIN recombinase, DNA-in 35.4 17 0.0006 22.6 1.7 22 152-173 22-43 (52)
234 3uo3_A J-type CO-chaperone JAC 35.2 2E+02 0.0069 24.2 9.4 108 126-240 25-147 (181)
235 3bru_A Regulatory protein, TET 35.2 32 0.0011 27.0 3.6 43 129-171 28-70 (222)
236 1gmj_A ATPase inhibitor; coile 35.2 74 0.0025 24.6 5.4 36 205-240 41-80 (84)
237 1hqc_A RUVB; extended AAA-ATPa 35.0 28 0.00097 29.8 3.5 54 133-186 245-300 (324)
238 2id3_A Putative transcriptiona 35.0 10 0.00035 30.8 0.7 42 130-171 39-80 (225)
239 2w57_A Ferric uptake regulatio 34.5 24 0.00081 28.5 2.7 46 140-185 22-72 (150)
240 2wv0_A YVOA, HTH-type transcri 34.5 41 0.0014 29.0 4.4 51 135-185 14-68 (243)
241 1sd4_A Penicillinase repressor 34.4 34 0.0012 25.6 3.5 46 138-185 13-62 (126)
242 4a6d_A Hydroxyindole O-methylt 34.4 28 0.00094 31.4 3.4 45 140-185 33-77 (353)
243 3u1d_A Uncharacterized protein 34.0 33 0.0011 28.8 3.6 46 140-185 34-80 (151)
244 3edp_A LIN2111 protein; APC883 34.0 35 0.0012 29.3 4.0 51 135-185 13-67 (236)
245 3he0_A Transcriptional regulat 34.0 33 0.0011 26.3 3.4 42 129-170 9-50 (196)
246 3p9c_A Caffeic acid O-methyltr 33.7 27 0.00093 31.6 3.3 45 140-184 45-94 (364)
247 2dgc_A Protein (GCN4); basic d 33.7 57 0.0019 23.4 4.4 30 205-234 31-60 (63)
248 1y6u_A XIS, excisionase from t 33.6 19 0.00065 26.3 1.9 26 148-173 13-38 (70)
249 2v7f_A RPS19, RPS19E SSU ribos 33.5 35 0.0012 28.4 3.7 46 138-186 57-116 (150)
250 3dv8_A Transcriptional regulat 33.3 18 0.00061 29.0 1.8 39 151-190 169-207 (220)
251 2iu5_A DHAS, YCEG, HTH-type dh 33.3 40 0.0014 26.3 3.8 37 134-170 16-52 (195)
252 1ft9_A Carbon monoxide oxidati 33.1 42 0.0014 27.1 4.0 36 152-187 164-199 (222)
253 2p5k_A Arginine repressor; DNA 33.0 35 0.0012 22.7 3.0 37 142-184 12-53 (64)
254 2hxi_A Putative transcriptiona 32.2 32 0.0011 29.1 3.3 44 127-170 25-68 (241)
255 4ev0_A Transcription regulator 32.1 39 0.0013 26.9 3.6 34 151-184 163-196 (216)
256 2dg7_A Putative transcriptiona 31.9 42 0.0014 26.0 3.7 38 134-171 10-47 (195)
257 3dkw_A DNR protein; CRP-FNR, H 31.8 33 0.0011 27.5 3.2 38 152-190 179-216 (227)
258 1fxk_C Protein (prefoldin); ar 31.7 98 0.0033 24.2 5.9 33 207-239 91-123 (133)
259 3ra3_A P1C; coiled coil domain 31.2 28 0.00097 21.6 2.0 24 214-237 3-26 (28)
260 3mwm_A ZUR, putative metal upt 31.2 38 0.0013 26.9 3.4 45 140-185 19-68 (139)
261 2qtq_A Transcriptional regulat 31.1 45 0.0015 25.8 3.8 42 129-170 14-55 (213)
262 1l8d_A DNA double-strand break 30.8 99 0.0034 23.4 5.7 30 206-235 73-102 (112)
263 3ppb_A Putative TETR family tr 30.5 45 0.0016 25.3 3.7 40 131-170 9-48 (195)
264 2yve_A Transcriptional regulat 30.0 42 0.0014 26.2 3.4 37 134-170 7-43 (185)
265 2gqq_A Leucine-responsive regu 30.0 10 0.00035 30.5 -0.1 47 135-183 13-59 (163)
266 2xig_A Ferric uptake regulatio 30.0 45 0.0015 26.8 3.7 45 140-185 32-81 (150)
267 1l8d_A DNA double-strand break 29.9 1.1E+02 0.0037 23.1 5.8 40 201-240 7-46 (112)
268 3qkx_A Uncharacterized HTH-typ 29.8 44 0.0015 25.3 3.5 36 134-169 11-46 (188)
269 2rae_A Transcriptional regulat 29.6 46 0.0016 25.9 3.6 43 128-170 14-56 (207)
270 2zkz_A Transcriptional repress 29.6 20 0.00068 26.6 1.4 37 150-187 40-76 (99)
271 3cta_A Riboflavin kinase; stru 29.5 19 0.00064 30.6 1.4 38 148-185 24-61 (230)
272 1nkp_A C-MYC, MYC proto-oncoge 29.3 1E+02 0.0035 23.2 5.4 35 204-238 52-86 (88)
273 3q0w_A HTH-type transcriptiona 29.1 29 0.00099 28.2 2.4 41 131-171 44-84 (236)
274 2qlz_A Transcription factor PF 29.1 34 0.0012 30.1 3.0 43 149-191 176-218 (232)
275 3bwg_A Uncharacterized HTH-typ 29.0 53 0.0018 28.2 4.2 50 136-185 10-63 (239)
276 3on4_A Transcriptional regulat 28.9 50 0.0017 25.0 3.6 41 130-170 9-49 (191)
277 2j5u_A MREC protein; bacterial 28.9 32 0.0011 30.6 2.9 45 206-251 28-73 (255)
278 1nlw_A MAD protein, MAX dimeri 28.5 1E+02 0.0035 22.9 5.2 30 206-235 49-78 (80)
279 3iv1_A Tumor susceptibility ge 28.5 1.4E+02 0.0049 22.6 6.0 34 206-239 41-74 (78)
280 3vp5_A Transcriptional regulat 28.4 47 0.0016 26.1 3.5 36 134-169 15-50 (189)
281 3kkc_A TETR family transcripti 28.1 33 0.0011 26.0 2.4 39 132-170 13-51 (177)
282 2qq9_A Diphtheria toxin repres 27.9 1.1E+02 0.0037 25.9 5.9 38 149-186 22-59 (226)
283 3f8m_A GNTR-family protein tra 27.9 29 0.00099 30.1 2.3 43 147-189 31-74 (248)
284 3mnl_A KSTR, transcriptional r 27.9 9.8 0.00033 29.6 -0.6 43 129-171 18-60 (203)
285 1gd2_E Transcription factor PA 27.8 87 0.003 23.1 4.6 32 206-237 31-62 (70)
286 3kcc_A Catabolite gene activat 27.8 77 0.0026 26.5 5.0 35 151-185 217-251 (260)
287 2fmy_A COOA, carbon monoxide o 27.8 37 0.0013 27.3 2.8 40 151-191 167-207 (220)
288 3col_A Putative transcription 27.7 36 0.0012 25.9 2.6 41 130-170 9-49 (196)
289 3u06_A Protein claret segregat 27.7 74 0.0025 30.3 5.3 30 208-237 7-36 (412)
290 1zk8_A Transcriptional regulat 27.7 44 0.0015 25.5 3.2 41 130-170 7-47 (183)
291 2zb9_A Putative transcriptiona 27.6 22 0.00075 28.1 1.4 39 133-171 25-63 (214)
292 2zhg_A Redox-sensitive transcr 27.5 1.8E+02 0.006 23.6 7.0 87 149-239 9-118 (154)
293 3eet_A Putative GNTR-family tr 27.3 68 0.0023 28.3 4.7 52 134-185 32-87 (272)
294 1sgm_A Putative HTH-type trans 27.3 53 0.0018 24.9 3.5 39 134-172 9-47 (191)
295 3kz9_A SMCR; transcriptional r 26.9 57 0.0019 25.0 3.6 39 133-171 19-57 (206)
296 3oja_B Anopheles plasmodium-re 26.8 1E+02 0.0034 29.3 6.0 29 212-240 538-566 (597)
297 4emc_A Monopolin complex subun 26.7 1E+02 0.0034 27.1 5.5 34 206-239 22-55 (190)
298 3g7r_A Putative transcriptiona 26.5 45 0.0016 26.7 3.2 44 127-170 31-74 (221)
299 3ryp_A Catabolite gene activat 26.4 77 0.0026 24.9 4.5 35 151-185 167-201 (210)
300 1fx7_A Iron-dependent represso 26.4 55 0.0019 27.8 3.8 35 152-186 25-59 (230)
301 3gpv_A Transcriptional regulat 26.3 64 0.0022 26.1 4.0 33 204-236 102-134 (148)
302 3e97_A Transcriptional regulat 26.3 33 0.0011 27.8 2.2 35 151-185 175-209 (231)
303 1fpo_A HSC20, chaperone protei 26.2 2.8E+02 0.0095 22.9 8.1 97 131-239 15-137 (171)
304 2bgc_A PRFA; bacterial infecti 26.0 29 0.00099 28.6 1.9 35 151-185 169-204 (238)
305 2hxo_A Putative TETR-family tr 25.8 83 0.0028 26.3 4.8 42 129-170 14-55 (237)
306 3nmd_A CGMP dependent protein 25.8 1.4E+02 0.0049 22.3 5.5 30 206-235 21-50 (72)
307 1hjb_A Ccaat/enhancer binding 25.6 1.6E+02 0.0053 22.6 5.8 32 207-238 39-70 (87)
308 3on2_A Probable transcriptiona 25.6 65 0.0022 24.5 3.8 38 133-170 14-51 (199)
309 3ke2_A Uncharacterized protein 25.5 50 0.0017 27.1 3.1 33 150-182 32-64 (117)
310 2iai_A Putative transcriptiona 25.5 43 0.0015 27.0 2.8 36 135-170 34-69 (230)
311 2oz6_A Virulence factor regula 25.3 31 0.0011 27.2 1.9 38 152-190 165-202 (207)
312 3knw_A Putative transcriptiona 25.2 36 0.0012 26.4 2.2 43 128-170 11-53 (212)
313 3aqt_A Bacterial regulatory pr 24.7 27 0.00093 28.7 1.5 42 129-170 44-85 (245)
314 1g2h_A Transcriptional regulat 24.4 1.1E+02 0.0038 20.9 4.5 37 133-173 18-55 (61)
315 2hku_A A putative transcriptio 24.1 49 0.0017 26.1 2.9 40 130-170 19-58 (215)
316 3bqz_B HTH-type transcriptiona 23.9 49 0.0017 25.2 2.8 37 135-171 6-42 (194)
317 3e7l_A Transcriptional regulat 23.9 66 0.0023 22.1 3.2 40 133-174 16-55 (63)
318 1gd2_E Transcription factor PA 23.8 1.3E+02 0.0045 22.1 5.0 33 203-235 35-67 (70)
319 2zcw_A TTHA1359, transcription 23.6 35 0.0012 27.1 1.9 39 152-191 147-185 (202)
320 2gkw_A TNF receptor-associated 23.6 1.3E+02 0.0046 24.9 5.6 41 207-247 3-43 (192)
321 3him_A Probable transcriptiona 23.5 54 0.0018 25.2 2.9 41 130-170 15-55 (211)
322 3iwz_A CAP-like, catabolite ac 23.4 35 0.0012 27.4 1.9 37 152-189 188-224 (230)
323 1q08_A Zn(II)-responsive regul 23.3 89 0.003 22.8 4.0 31 207-237 42-72 (99)
324 4dzo_A Mitotic spindle assembl 23.3 1.6E+02 0.0053 23.8 5.7 34 204-237 4-37 (123)
325 3eqx_A FIC domain containing t 23.2 56 0.0019 30.6 3.5 37 149-185 309-345 (373)
326 2g7s_A Transcriptional regulat 23.1 46 0.0016 25.2 2.4 37 134-170 11-47 (194)
327 3egq_A TETR family transcripti 23.0 49 0.0017 25.0 2.6 37 135-171 8-44 (170)
328 1zyb_A Transcription regulator 23.0 81 0.0028 25.7 4.1 39 151-190 186-224 (232)
329 3l7w_A Putative uncharacterize 22.9 2.3E+02 0.0078 21.1 6.4 45 140-184 14-59 (108)
330 1t3j_A Mitofusin 1; coiled coi 22.6 1.3E+02 0.0045 23.7 5.0 28 203-230 46-73 (96)
331 3oja_A Leucine-rich immune mol 22.5 1E+02 0.0035 28.7 5.2 27 213-239 451-477 (487)
332 2dg8_A Putative TETR-family tr 22.4 58 0.002 25.3 3.0 38 133-170 11-48 (193)
333 4aci_A HTH-type transcriptiona 22.3 28 0.00095 26.8 1.0 44 128-171 11-54 (191)
334 2zcx_A SCO7815, TETR-family tr 22.3 46 0.0016 27.4 2.4 38 133-170 25-62 (231)
335 2yu3_A DNA-directed RNA polyme 22.1 1E+02 0.0036 23.8 4.3 54 131-184 33-86 (95)
336 3lwj_A Putative TETR-family tr 22.1 39 0.0013 26.1 1.9 41 130-170 11-51 (202)
337 1zx4_A P1 PARB, plasmid partit 22.1 3.2E+02 0.011 23.5 7.8 40 129-172 6-45 (192)
338 3b02_A Transcriptional regulat 21.9 32 0.0011 27.3 1.3 34 152-185 140-173 (195)
339 3m9b_A Proteasome-associated A 21.6 80 0.0027 28.8 4.0 36 203-238 53-88 (251)
340 3k9t_A Putative peptidase; str 21.6 31 0.0011 33.7 1.4 35 148-182 399-433 (435)
341 3ccy_A Putative TETR-family tr 21.3 1.1E+02 0.0037 23.8 4.4 39 132-170 15-53 (203)
342 3mvp_A TETR/ACRR transcription 21.3 43 0.0015 26.0 2.0 43 128-170 23-65 (217)
343 2qib_A TETR-family transcripti 21.2 63 0.0022 26.1 3.0 37 134-170 16-52 (231)
344 3f1b_A TETR-like transcription 21.0 61 0.0021 24.8 2.8 38 134-171 17-54 (203)
345 4fe7_A Xylose operon regulator 20.9 46 0.0016 30.0 2.4 41 135-175 305-345 (412)
346 3la7_A Global nitrogen regulat 20.9 42 0.0014 27.7 1.9 39 151-190 193-231 (243)
347 2qen_A Walker-type ATPase; unk 20.7 94 0.0032 26.3 4.2 44 138-184 285-333 (350)
348 2opt_A Actii protein; helical 20.6 73 0.0025 26.9 3.4 42 130-171 5-46 (234)
349 2lw1_A ABC transporter ATP-bin 20.6 1.3E+02 0.0046 22.3 4.6 27 209-235 20-46 (89)
350 2w83_C C-JUN-amino-terminal ki 20.6 91 0.0031 23.8 3.5 27 208-234 48-74 (77)
351 3d0s_A Transcriptional regulat 20.5 44 0.0015 26.9 1.9 39 152-191 178-216 (227)
352 2zdi_C Prefoldin subunit alpha 20.5 1.6E+02 0.0056 23.6 5.4 101 138-238 12-132 (151)
353 1go4_E MAD1 (mitotic arrest de 20.5 2E+02 0.0068 22.7 5.6 36 202-237 10-45 (100)
354 2g7l_A TETR-family transcripti 20.3 79 0.0027 26.7 3.6 42 130-171 18-59 (243)
355 3qbm_A TETR transcriptional re 20.3 66 0.0023 24.5 2.9 37 134-170 10-46 (199)
356 3nrg_A TETR family transcripti 20.2 78 0.0027 24.5 3.3 41 131-171 13-53 (217)
357 1gu4_A CAAT/enhancer binding p 20.1 2.4E+02 0.0083 21.1 5.8 32 207-238 39-70 (78)
358 3rd3_A Probable transcriptiona 20.0 73 0.0025 24.2 3.0 42 129-170 8-49 (197)
359 3s4r_A Vimentin; alpha-helix, 20.0 2.3E+02 0.0079 21.5 5.9 37 202-238 54-90 (93)
No 1
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.96 E-value=2.7e-30 Score=198.24 Aligned_cols=73 Identities=67% Similarity=0.990 Sum_probs=65.8
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcc-cceehhhhhhhhhhccccccccCCceEEecCC
Q 023564 123 LSNGCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSKNHIRWKGSD 195 (280)
Q Consensus 123 p~~~~R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~ 195 (280)
|.+.+|+++||++||++||++|.+++++++||++||+.|+| +|||||||+|||||||||+|.+||.|+|+|++
T Consensus 2 ~~~~~R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~W~G~~ 75 (76)
T 1cf7_A 2 PGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVG 75 (76)
T ss_dssp ----CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEEC---
T ss_pred CCCCCCccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEEEeCCC
Confidence 66799999999999999999999999999999999999999 99999999999999999999999999999976
No 2
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=99.80 E-value=1.9e-20 Score=151.45 Aligned_cols=75 Identities=23% Similarity=0.331 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcccccChHhhcCCCCCccchh----------------
Q 023564 202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYMFLTEEDIASLPCFQVIAV---------------- 265 (280)
Q Consensus 202 ~~~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lted~~n~~~~YVT~eDI~~l~~fq~qTv---------------- 265 (280)
+..++..||+|+++|..+|+.||++|++|+++|++|++|+.|.+|+|||++||++|+||++|||
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n~~~aYVT~~Di~~i~~f~~qtviaIkAP~gT~LeVpdp 83 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQMVMVIKAPPETQLQAVDS 83 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEEEEEEECCTTCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccceecHHHHhcCcCCCcCeEEEEECCCCCeeeeCCC
Confidence 3456789999999999999999999999999999999999999999999999999999999998
Q ss_pred --eeeeeehhhhh
Q 023564 266 --NLRIYLKSIFS 276 (280)
Q Consensus 266 --~lqI~LkS~~~ 276 (280)
.+||||||+..
T Consensus 84 ~~~yqi~LkS~~G 96 (106)
T 2aze_B 84 SENFQISLKSKQG 96 (106)
T ss_dssp SSCEEEEEECSSS
T ss_pred CcceEEEEECCCC
Confidence 89999999864
No 3
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.39 E-value=1.4e-13 Score=109.91 Aligned_cols=65 Identities=32% Similarity=0.524 Sum_probs=45.9
Q ss_pred CCcHHHHHHHHHHHHHhCCCCceeHHHHHHHh-------------------cccceehhhhhhhhhhccccccccCCceE
Q 023564 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVL-------------------EVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (280)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L-------------------~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (280)
...|..++.+..+.++. .+....+++|+.| ..+|||+||++|||++||||+| .|+.|+
T Consensus 9 ~~GLr~fS~kVcekVk~--k~~Tty~eVAdeLV~e~~~~~~~~~~~~~~d~~~~rRRvYD~~NVl~a~gii~K-~k~~i~ 85 (95)
T 1cf7_B 9 GKGLRHFSMKVCEKVQR--KGTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISK-EKKEIK 85 (95)
T ss_dssp CCHHHHHHHHHHHHHHH--HSEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBCC-CSSCEE
T ss_pred CccHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHhcccccCccchhcccccchhhHHHHHHHHHHhcceec-CCCEEE
Confidence 44555555555555542 2344555555554 4599999999999999999999 799999
Q ss_pred EecCCCC
Q 023564 191 WKGSDSL 197 (280)
Q Consensus 191 W~G~~~s 197 (280)
|+|++.+
T Consensus 86 W~g~~~~ 92 (95)
T 1cf7_B 86 WIGLPTN 92 (95)
T ss_dssp BCCCC--
T ss_pred EecCCcc
Confidence 9998753
No 4
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=93.78 E-value=0.047 Score=40.13 Aligned_cols=44 Identities=27% Similarity=0.527 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccc
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIE 182 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe 182 (280)
.+.+++++ +.+|++|+..+|.+++|.|--+||+.+=||.=|||.
T Consensus 13 ~~lL~yIr-~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIV-NNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHH-HTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-HcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 45677776 568999999999999999999999999999999985
No 5
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=93.38 E-value=0.083 Score=39.31 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=47.7
Q ss_pred HHHHHHHHhCC-CCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEEe
Q 023564 138 RKFINLIQEAK-DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK 192 (280)
Q Consensus 138 kkFI~ll~~a~-~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~ 192 (280)
.+.+.++.+.+ +..+...++|+.|+|.++.+.-.+.-||.-|+|.+.+.+.=.|.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~ 72 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 72 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceE
Confidence 66788887665 66799999999999999999999999999999999876666774
No 6
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=92.84 E-value=0.11 Score=40.08 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEEec
Q 023564 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKG 193 (280)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G 193 (280)
|-.-..+..+.+.+|+. ++ +...++|+.||++|.-++=.++-||.=|+|.+..-+--.|.=
T Consensus 12 d~~~~~~~~~IL~lL~~--~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~~ 72 (82)
T 1oyi_A 12 ERSNAEIVCEAIKTIGI--EG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFM 72 (82)
T ss_dssp -CCSHHHHHHHHHHHSS--ST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEES
T ss_pred ccchHHHHHHHHHHHHH--cC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCccee
Confidence 44667788999999983 45 999999999999999999999999999999999999999974
No 7
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=92.52 E-value=0.14 Score=36.87 Aligned_cols=51 Identities=14% Similarity=0.289 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
.-.+.++++.+ .+..+.+.++|+.|+|.|--++-+++.|+.-|+|+...+.
T Consensus 11 ~~~~IL~~L~~-~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~G 61 (67)
T 2heo_A 11 LEQKILQVLSD-DGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPK 61 (67)
T ss_dssp HHHHHHHHHHH-HCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETT
T ss_pred HHHHHHHHHHH-cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCCc
Confidence 34567888865 3456999999999999999999999999999999874443
No 8
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=92.51 E-value=0.96 Score=36.47 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=33.7
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
++.+.+.++|+.|++.+-.+.-+++-||.-|+|++..
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 3459999999999999999999999999999999874
No 9
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=92.43 E-value=0.13 Score=38.95 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhCC-CCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEEe
Q 023564 136 LTRKFINLIQEAK-DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK 192 (280)
Q Consensus 136 LTkkFI~ll~~a~-~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~ 192 (280)
+-.+.+++|.+.+ +..+...++|+.|+|+|+-+.-.+.-||.-|+|.+.+.+.=.|.
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~ 68 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 68 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEE
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeE
Confidence 3466778887554 56799999999999999999999999999999999876667785
No 10
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=92.32 E-value=0.46 Score=37.37 Aligned_cols=47 Identities=9% Similarity=0.172 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
.+.+..+...++.-+...++|+.|++.+-.+|-.++.|+..|+|++.
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 34566666554433999999999999999999999999999999986
No 11
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=92.04 E-value=0.39 Score=36.83 Aligned_cols=46 Identities=9% Similarity=0.076 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
.+....+..+. .+ +-...+|..+++.-|++-.+++.|+.-|||++.
T Consensus 8 eIi~~IL~~i~---~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 8 EIIQAILEACK---SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHHHHHHHHT---TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHH---cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 34445555554 34 889999999999999999999999999999998
No 12
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=91.07 E-value=0.96 Score=34.52 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
-..+.++...+++.+.+.++|+.+++.+=.+.-+++-||.-|+|++.
T Consensus 34 ~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 34 GHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp HHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 34556666777778999999999999999999999999999999987
No 13
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=90.97 E-value=0.54 Score=35.23 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCc
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNH 188 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~ 188 (280)
+.+.++. ++.+.+.++|+.|++.+--++-.++.|+.-|+|++.....
T Consensus 25 ~IL~~L~---~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr 71 (114)
T 2oqg_A 25 EILTELG---RADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGR 71 (114)
T ss_dssp HHHHHHH---HSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCC
Confidence 3455553 2458999999999999999999999999999998764443
No 14
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=90.87 E-value=1.5 Score=34.01 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=33.7
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.++...+++.+...++|+.+++.+=.+.-+++-||.-|+|++..
T Consensus 46 vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 46 MIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp HHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred HHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 4555556666789999999999999999999999999999999883
No 15
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=90.16 E-value=2.9 Score=31.63 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=42.0
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc---cCCceEEecC
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT---SKNHIRWKGS 194 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~---~KN~i~W~G~ 194 (280)
+.+.++.... +.+.+.++|+.+++.+=.++.+++.||.-|+|++. ......+.+.
T Consensus 30 ~il~~L~~~~-~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~ 87 (152)
T 1ku9_A 30 AVYAILYLSD-KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAV 87 (152)
T ss_dssp HHHHHHHHCS-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEEC
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeec
Confidence 3455553233 56999999999999999999999999999999986 2234455543
No 16
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=89.82 E-value=0.45 Score=34.53 Aligned_cols=43 Identities=16% Similarity=0.252 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccc
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 183 (280)
+.+.++... +.+...++|+.|+|++.-++.+++.|+.-|+|++
T Consensus 4 ~Il~~L~~~--~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 4 EILEFLNRH--NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHS--CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 456666544 4589999999999999999999999999999994
No 17
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=89.37 E-value=0.16 Score=47.27 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=41.9
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEEecC
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGS 194 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~ 194 (280)
++.|+. .|.....++|+.+|+.+.++|++++.|+.-|+|+....+..+|.-.
T Consensus 24 Y~~Ll~---~g~~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~av 75 (342)
T 3qph_A 24 YWTLLV---YGPSTAKEISTKSGIPYNRVYDTISSLKLRGFVTEIEGTPKVYAAY 75 (342)
T ss_dssp SHHHHH---HHHHHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEECCTTCEEEEC
T ss_pred HHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCceeEEEEc
Confidence 455553 3456778899999999999999999999999999886666777643
No 18
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=88.72 E-value=1.3 Score=33.75 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=36.9
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.++.. .+.+...++|+.+++.+-.++-+++-||.-|+|++..
T Consensus 38 iL~~l~~--~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 38 ILQKIYF--EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp HHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 3444433 3468999999999999999999999999999999873
No 19
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=88.68 E-value=1.2 Score=33.97 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=34.6
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.+...++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeec
Confidence 6678999999999999999999999999999999863
No 20
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=86.27 E-value=1.6 Score=31.50 Aligned_cols=46 Identities=7% Similarity=0.114 Sum_probs=38.2
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
.+.++. .++.+.+.++|+.|++.+--++-.++.|+..|+|++....
T Consensus 29 il~~l~--~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~ 74 (99)
T 3cuo_A 29 ILCMLS--GSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDA 74 (99)
T ss_dssp HHHHHT--TCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHH--hCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 344442 3557999999999999999999999999999999886543
No 21
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=86.26 E-value=0.68 Score=33.57 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
..+.++.. .+.+...++|+.+++.+-.+|.+++.|+.-|+|++..
T Consensus 24 ~il~~l~~--~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 24 RIYSLLLE--RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 34555543 3458999999999999999999999999999999864
No 22
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=85.85 E-value=0.88 Score=35.50 Aligned_cols=48 Identities=13% Similarity=0.244 Sum_probs=39.8
Q ss_pred HHHHHHHHHhC-CCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 137 TRKFINLIQEA-KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 137 TkkFI~ll~~a-~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
+-+.+.++... +++.+.+.++|+.++|.++-++.|++.|+..|+|+..
T Consensus 11 al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 11 GLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 33445555444 4678999999999999999999999999999999876
No 23
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=85.56 E-value=4.9 Score=31.28 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=33.1
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.+...++|+.|++.+-.++-+++.||.-|+|++..
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 4568999999999999999999999999999999864
No 24
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=85.47 E-value=1.8 Score=33.46 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=33.7
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+.+.+.++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 468999999999999999999999999999999873
No 25
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=85.32 E-value=1.4 Score=33.63 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=35.2
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhccccccccCCc
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNH 188 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~ 188 (280)
+.+.+.++|+.|++.+.-++-.++.|+..|+|++...+.
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr 75 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGT 75 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 678999999999999999999999999999998765443
No 26
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=85.18 E-value=3.3 Score=31.83 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=33.7
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+.+...++|+.|++.+-.+..+++-||.-|+|++..
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecC
Confidence 468999999999999999999999999999999863
No 27
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=85.12 E-value=2.9 Score=33.06 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=40.4
Q ss_pred HHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 141 INLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 141 I~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+.++...+++.+...++|+.|++.+=.+--+++-||.-|+|++..
T Consensus 41 L~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 41 LVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp HHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 445566788899999999999999999999999999999999874
No 28
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=85.12 E-value=2.9 Score=31.50 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=36.7
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
.+.++.. .+.+...++|+.+++.+-.++-+++-||.-|+|++.
T Consensus 34 iL~~l~~--~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 34 CLLRIHR--EPGIKQDELATFFHVDKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp HHHHHHH--STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3444444 366899999999999999999999999999999985
No 29
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=85.12 E-value=0.74 Score=35.05 Aligned_cols=47 Identities=9% Similarity=0.098 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.++.++...+++.+...++|+.|++.+--++.+++-||.-|+|++..
T Consensus 38 ~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 38 TIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 34555666665579999999999999999999999999999999863
No 30
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=84.84 E-value=1.4 Score=35.06 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=36.1
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.++...+++.+...++|+.|++.+=-+.-+++-||.-|+|++..
T Consensus 51 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 51 TLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecC
Confidence 4444444445789999999999999999999999999999999874
No 31
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=84.72 E-value=5.8 Score=30.84 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=32.7
Q ss_pred ceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
.+.+.++|+.|++.+-.++-+++.||.-|+|++.
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 5899999999999999999999999999999986
No 32
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=84.70 E-value=0.67 Score=34.37 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=39.1
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEE
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (280)
.+.++ ++.+.+.++|+.|++.+--++-.++.|+..|+|++.. ..|..
T Consensus 36 Il~~L----~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~-g~y~l 82 (96)
T 1y0u_A 36 ILRML----DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-ERWVV 82 (96)
T ss_dssp HHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred HHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC-CEEEE
Confidence 44555 3568999999999999999999999999999999876 54443
No 33
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=84.68 E-value=1.8 Score=33.18 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=38.1
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
..+.++... .+.+...++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 39 ~iL~~l~~~-~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~ 84 (147)
T 2hr3_A 39 VVLGAIDRL-GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHA 84 (147)
T ss_dssp HHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHc-CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCC
Confidence 344444442 4568999999999999999999999999999999873
No 34
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=84.65 E-value=3.8 Score=31.43 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=32.8
Q ss_pred ceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.+.++|+.+++.+-.++-+++-||.-|+|++..
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecc
Confidence 39999999999999999999999999999999863
No 35
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=84.56 E-value=0.62 Score=33.87 Aligned_cols=38 Identities=16% Similarity=0.332 Sum_probs=34.8
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhccccccccC
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (280)
++.+...++|+.+++.+--+|.+++.|+.-|+|++...
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 45699999999999999999999999999999998743
No 36
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=84.52 E-value=1.4 Score=34.16 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=39.5
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
++.++...+++.+...++|+.|++.+=.+.-+++-||.-|+|++.
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 455555665678999999999999999999999999999999985
No 37
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=84.34 E-value=6 Score=30.49 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=36.2
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 183 (280)
.+.++... +.+...++|+.|++.+-.+.-+++-||.-|+|++
T Consensus 46 iL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 46 MINVIYST--PGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHS--TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 44444443 4599999999999999999999999999999999
No 38
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=84.30 E-value=1.2 Score=34.69 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=33.7
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+.+.+.++|+.|+|.+--+..+++.||.-|+|++..
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEee
Confidence 458999999999999999999999999999999874
No 39
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=83.91 E-value=5.7 Score=30.43 Aligned_cols=45 Identities=18% Similarity=0.332 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
..+.++... +.+...++|+.|++.+=.+.-+++-||.-|+|++..
T Consensus 44 ~iL~~l~~~--~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~ 88 (148)
T 3nrv_A 44 RIISVLSSA--SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNG 88 (148)
T ss_dssp HHHHHHHHS--SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHcC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeec
Confidence 344444443 478999999999999999999999999999999873
No 40
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=83.78 E-value=0.58 Score=33.70 Aligned_cols=47 Identities=17% Similarity=0.417 Sum_probs=39.5
Q ss_pred HHHHHHHhCCCCceeHHHHHHHh-----cccceehhhhhhhhhhcccccccc
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
..++++...+++.+.+.++++.| +|.+=-+|-.++.|+..|+|.+..
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEe
Confidence 35666654443689999999999 899999999999999999999864
No 41
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=83.76 E-value=9.3 Score=29.82 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=34.1
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.+...++|+.+++.+=.+.-+++-||.-|+|++..
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 3568999999999999999999999999999999874
No 42
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=83.48 E-value=4.1 Score=31.00 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=36.8
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.++... +.+...++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 34 iL~~l~~~--~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 34 YLVRVCEN--PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHHHHHS--TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHC--cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 34444443 468999999999999999999999999999999863
No 43
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=83.26 E-value=6.9 Score=29.83 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=37.2
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.++... +.+.+.++|+.+++.+-.+.-+++-||.-|+|++..
T Consensus 42 iL~~l~~~--~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 42 VLEGIEAN--EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHHHHHH--SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHc--CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccC
Confidence 34444333 678999999999999999999999999999999873
No 44
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=83.11 E-value=2.1 Score=31.52 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=35.0
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
+.+...++|+.|++.+..++--++.|+..|+|++....
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEA 72 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 78999999999999999999999999999999876543
No 45
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=82.94 E-value=2.6 Score=32.23 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
..+.++. ..+ +...++|+.+++.+=.+.-+++.||.-|+|++..
T Consensus 42 ~iL~~l~--~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 42 HILMLLS--EES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHT--TCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHH--hCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 3444554 344 9999999999999999999999999999999864
No 46
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=82.43 E-value=1.5 Score=33.90 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=35.5
Q ss_pred CCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.++.+.+.++|+.|++.+--+..+++.||.-|+|++..
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 56779999999999999999999999999999999875
No 47
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=82.35 E-value=1.6 Score=32.96 Aligned_cols=46 Identities=9% Similarity=0.288 Sum_probs=37.8
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
+.+.++. ++.+.+.++|+.|++.+--++-.++.|+..|+|++...+
T Consensus 30 ~IL~~L~---~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 30 RIMELLS---VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG 75 (106)
T ss_dssp HHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3445554 355899999999999999999999999999999876443
No 48
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=82.33 E-value=5.9 Score=29.99 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=34.9
Q ss_pred CCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
..+.+...++|+.|++.+-.++.+++-||.-|+|++..
T Consensus 49 ~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp CSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred cCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecC
Confidence 45678999999999999999999999999999999873
No 49
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=82.21 E-value=8.5 Score=29.96 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=33.7
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
.+.+.+.++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 356899999999999999999999999999999986
No 50
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=81.73 E-value=0.55 Score=36.02 Aligned_cols=37 Identities=11% Similarity=0.337 Sum_probs=34.1
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.+...++|+.|++.+-.++.+++-||.-|+|++..
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 3469999999999999999999999999999999874
No 51
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=81.42 E-value=7.5 Score=30.13 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=33.8
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.+...++|+.|++.+-.+.-+++-||.-|+|++..
T Consensus 60 ~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~ 96 (160)
T 3boq_A 60 PDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAM 96 (160)
T ss_dssp TTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC-
T ss_pred CCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 4469999999999999999999999999999999863
No 52
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=81.24 E-value=2.8 Score=31.76 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=33.2
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+...+.++|+.|++.+--++-.++.||..|+|.+..
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 468999999999999999999999999999998764
No 53
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=81.22 E-value=1.6 Score=33.72 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEE
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (280)
+.+.++. ++.+.+.++|+.|++.+-.+.-.+++|+..|||++.......+
T Consensus 22 ~Il~~L~---~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~ 71 (118)
T 3f6o_A 22 AVLGRLS---RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRT 71 (118)
T ss_dssp HHHHHHH---TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEE
Confidence 3555554 4678999999999999999999999999999998765444333
No 54
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=81.03 E-value=2.6 Score=33.25 Aligned_cols=37 Identities=24% Similarity=0.188 Sum_probs=34.1
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.+...++|+.+++.+=-+.-+++-||.-|+|++..
T Consensus 58 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecC
Confidence 3468999999999999999999999999999999873
No 55
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=80.24 E-value=3.9 Score=29.39 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=36.7
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.++.. ++.+...++|+.|++.+-.+|-.++.||.-|+|++..
T Consensus 21 iL~~L~~--~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 21 IMIFLLP--RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHh--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4444432 3568999999999999999999999999999999753
No 56
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=80.20 E-value=1.6 Score=36.41 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccc-cccccCCceEEec
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGL-IEKTSKNHIRWKG 193 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGL-IeK~~KN~i~W~G 193 (280)
.+.+.++++.. +.+...++|+.|+|++|-||.=++.|+..|+ |... ..-|.+..
T Consensus 24 ~~Il~~L~~~~-~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~-~~Gy~l~~ 78 (187)
T 1j5y_A 24 KSIVRILERSK-EPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVAT-PRGYVLAG 78 (187)
T ss_dssp HHHHHHHHHCS-SCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEE-TTEEECCT
T ss_pred HHHHHHHHHcC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-CCEEEECC
Confidence 34566665443 4589999999999999999999999999999 8764 34455543
No 57
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=80.09 E-value=10 Score=29.75 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=33.9
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+.+...++|+.+++.+=-+.-+++-||.-|+|++..
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 478999999999999999999999999999999874
No 58
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=80.03 E-value=3 Score=32.45 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=36.7
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
.+.++.. ++.+.+.++|+.|++.+-.++-.++.|+..|+|++...+
T Consensus 47 IL~~L~~--~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~g 92 (122)
T 1u2w_A 47 ITYALCQ--DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEG 92 (122)
T ss_dssp HHHHHHH--SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC---
T ss_pred HHHHHHH--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4455543 456899999999999999999999999999999876433
No 59
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=79.91 E-value=16 Score=27.17 Aligned_cols=43 Identities=9% Similarity=0.263 Sum_probs=36.8
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
.+.++.. .+.+.+.++|+.+++.+-.++-+++-||.-|+|++.
T Consensus 38 iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 38 VIQVLAK--SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHH--SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHH--cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeec
Confidence 4444544 346999999999999999999999999999999986
No 60
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=79.76 E-value=4 Score=30.79 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=33.5
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+.+...++|+.+++.+-.++-+++-||.-|+|++..
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 349999999999999999999999999999999873
No 61
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=79.54 E-value=2.8 Score=27.66 Aligned_cols=30 Identities=10% Similarity=0.295 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023564 201 KLDDQVARLKAEIESLHAEECRIDDSIREK 230 (280)
Q Consensus 201 ~~~~~~~~Lk~El~~L~~eE~~LD~~I~~~ 230 (280)
.+..+.+..+++|++|+.+-..||++|+++
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 445667789999999999999999999864
No 62
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=79.41 E-value=5 Score=30.22 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=33.6
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+.+...++|+.|++.+-.++.+++-||.-|+|++..
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 458999999999999999999999999999999874
No 63
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=79.08 E-value=13 Score=31.81 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=36.8
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.++. ++.+...++|+.|++.+--+|-.++.|+.-|||++..
T Consensus 20 IL~~L~---~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~ 62 (202)
T 2p4w_A 20 ILFLLT---KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRV 62 (202)
T ss_dssp HHHHHH---HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEe
Confidence 455554 3568999999999999999999999999999999753
No 64
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=79.00 E-value=1.7 Score=40.00 Aligned_cols=57 Identities=14% Similarity=0.230 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccc-cccccCCceEEec
Q 023564 137 TRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGL-IEKTSKNHIRWKG 193 (280)
Q Consensus 137 TkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGL-IeK~~KN~i~W~G 193 (280)
-++.++++.++.+..+.-.++|+.|+|+|+-|+.-++.|+..|+ |+.....-|+...
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~ 62 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQ 62 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEETTTEEEEEE
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeCCCeEEEec
Confidence 35678888877788999999999999999999999999999998 6655556788875
No 65
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=78.91 E-value=2.5 Score=37.54 Aligned_cols=53 Identities=13% Similarity=0.335 Sum_probs=40.6
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEEec
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKG 193 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G 193 (280)
..++++...+ +.+.+.++|+.+|+.|=.+|-|++.|+..|++++.....| ..|
T Consensus 34 ~IL~~l~~~~-~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~~~~Y-~LG 86 (275)
T 3mq0_A 34 RILDLVAGSP-RDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSADGTL-RIG 86 (275)
T ss_dssp HHHHHHHHCS-SCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECTTSEE-EEC
T ss_pred HHHHHHhhCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCcE-Eeh
Confidence 3556665554 5699999999999999999999999999999999864333 345
No 66
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=78.87 E-value=13 Score=28.33 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=33.0
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.++... +.+...++|+.+++.+=.+.-+++-||.-|+|++..
T Consensus 42 vL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 42 VLKLIDEQ--RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp HHHHHHHT--TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeecc
Confidence 44444443 368999999999999999999999999999999873
No 67
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=78.57 E-value=13 Score=28.67 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=32.8
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+.+...++|+.+++.+-.+.-+++.||.-|+|++..
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC--
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCC
Confidence 668999999999999999999999999999999873
No 68
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=78.42 E-value=2.9 Score=30.99 Aligned_cols=45 Identities=11% Similarity=0.290 Sum_probs=37.3
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
.+.++. ++.+.+.++|+.|++.+-.++..+..|+..|+|++....
T Consensus 28 Il~~L~---~~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (102)
T 3pqk_A 28 LVCTLV---EGEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNI 72 (102)
T ss_dssp HHHHHH---TCCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSS
T ss_pred HHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 444553 255899999999999999999999999999999876443
No 69
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=78.16 E-value=3 Score=33.26 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=33.0
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
+.+.+.++|+.|++.+--++-+++-||.-|+|++.
T Consensus 58 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 58 GPINLATLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 45899999999999999999999999999999985
No 70
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=78.09 E-value=14 Score=28.16 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=33.0
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
+.+...++|+.|++.+--++-+++.||.-|+|++.
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 46899999999999999999999999999999986
No 71
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=77.97 E-value=8.4 Score=31.01 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=33.5
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+.+...++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 85 ~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 120 (181)
T 2fbk_A 85 EGLRPTELSALAAISGPSTSNRIVRLLEKGLIERRE 120 (181)
T ss_dssp SCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecC
Confidence 358999999999999999999999999999999873
No 72
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=77.54 E-value=1.9 Score=31.74 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=40.0
Q ss_pred CCcHHHHHHHHHHH--HHhCCCCceeHHHHHHHhccccee-hhhhhhhhhhccccc
Q 023564 130 DSSLGLLTRKFINL--IQEAKDGTLDLNRTAEVLEVQKRR-IYDITNVLEGIGLIE 182 (280)
Q Consensus 130 d~SLglLTkkFI~l--l~~a~~g~ldLn~aA~~L~VqKRR-IYDItNVLEgIGLIe 182 (280)
...+|.+.+-|.-+ +... ++.+.+.++|+.|++.+=. ++.+++.||.-|+|+
T Consensus 8 ~~~~g~~~~~l~~L~~l~~~-~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 8 RLQFGHLIRILPTLLEFEKK-GYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp GSBHHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 34456665554333 3333 2268999999999999999 999999999999999
No 73
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=77.49 E-value=5.4 Score=33.59 Aligned_cols=56 Identities=9% Similarity=0.067 Sum_probs=43.1
Q ss_pred CcHHH-HHHHHHHHHHh---CCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccC
Q 023564 131 SSLGL-LTRKFINLIQE---AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (280)
Q Consensus 131 ~SLgl-LTkkFI~ll~~---a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (280)
.++.. +.....+.+.. .|+..+...++|+.|||+|--+=+.+..|+.-|||+....
T Consensus 15 ~~~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~ 74 (222)
T 3ihu_A 15 GSASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRH 74 (222)
T ss_dssp -CHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECST
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 34443 33444444433 4788999999999999999999999999999999997644
No 74
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=77.12 E-value=1.3 Score=34.22 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=35.3
Q ss_pred CCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
..+.+...++|+.+++.+-.+.-+++-||.-|+|++..
T Consensus 47 ~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 47 NDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp TTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecC
Confidence 46789999999999999999999999999999999873
No 75
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=76.42 E-value=5.5 Score=31.62 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=30.5
Q ss_pred ceEEecCCCCCCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023564 188 HIRWKGSDSLGTSK-------LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (280)
Q Consensus 188 ~i~W~G~~~s~~~~-------~~~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lt 238 (280)
-+.|.|.+..--.. +..++..|+..++.|......+-+.|..+.+.|+++.
T Consensus 72 V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 72 VIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999976432112 2344555556666666666666666666666666553
No 76
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=76.21 E-value=6.5 Score=28.71 Aligned_cols=39 Identities=10% Similarity=0.222 Sum_probs=34.2
Q ss_pred CCceeHHHH----HHHhcccceehhhhhhhhhhccccccccCC
Q 023564 149 DGTLDLNRT----AEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 149 ~g~ldLn~a----A~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
.+.+...++ |+.+++.+--++-+++.||.-|+|++....
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~ 62 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQER 62 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 456788888 999999999999999999999999986443
No 77
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=76.03 E-value=8.5 Score=33.21 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=41.8
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEEec
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKG 193 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G 193 (280)
+.++++... ++.+.+.++|+.+++.|=-+|-+++.|+..|+|++...+.-...|
T Consensus 10 ~iL~~l~~~-~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg 63 (241)
T 2xrn_A 10 SIMRALGSH-PHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGFRLG 63 (241)
T ss_dssp HHHHHHHTC-TTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGGGCEEEEC
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCeEEEC
Confidence 345555443 346999999999999999999999999999999997542222345
No 78
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=75.51 E-value=2.3 Score=32.61 Aligned_cols=39 Identities=13% Similarity=0.103 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhh
Q 023564 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNV 174 (280)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNV 174 (280)
+..++++++.......++|.++|+.+++.+|.|.-++.-
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 8 MRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 568899999999888999999999999999999887765
No 79
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=75.38 E-value=2.4 Score=31.66 Aligned_cols=55 Identities=18% Similarity=0.316 Sum_probs=42.6
Q ss_pred HHHHHHHHhC----CCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc---CCceEEe
Q 023564 138 RKFINLIQEA----KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS---KNHIRWK 192 (280)
Q Consensus 138 kkFI~ll~~a----~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~---KN~i~W~ 192 (280)
++.++++++. .++.+.+.++|+.|||+.--+..-++.||.-|+|.+.. .-..+|.
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr~~~~~~~ 68 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGKGVPGLWR 68 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSSSSCCEEE
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCCCCcHHHHH
Confidence 3455555543 36889999999999999888999999999999998873 2345554
No 80
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=75.24 E-value=1.5 Score=33.24 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=34.8
Q ss_pred CCceeHHHHHHHh-cccceehhhhhhhhhhcccccccc
Q 023564 149 DGTLDLNRTAEVL-EVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 149 ~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
++.+...++|+.+ ++.+..++..++.||.-|||++..
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEee
Confidence 5778999999999 999999999999999999999874
No 81
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=75.11 E-value=4.6 Score=30.66 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=50.1
Q ss_pred CCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEEe
Q 023564 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK 192 (280)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~ 192 (280)
|.....+.+++|..+. +++.+-.+.+|.+||+.|+-|=-++.-|+.=|.|.+...+--.|.
T Consensus 10 ~~~~~~~v~~~i~~L~--~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~PP~W~ 70 (75)
T 1sfu_A 10 DAEIFSLVKKEVLSLN--TNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKWF 70 (75)
T ss_dssp SHHHHHHHHHHHHTSC--TTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCEEE
T ss_pred hHHHHHHHHHHHHhCC--CCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCCCCCcc
Confidence 3444556666666443 455599999999999999999999999999999999999999995
No 82
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=74.69 E-value=2.2 Score=31.97 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhc
Q 023564 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGI 178 (280)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgI 178 (280)
+..++++++.+.....+++.++|+.+|+++|.++-+..-.-|+
T Consensus 6 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~ 48 (108)
T 3oou_A 6 IIQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGE 48 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 4578889998888889999999999999999999887654443
No 83
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=74.35 E-value=2.5 Score=33.48 Aligned_cols=47 Identities=13% Similarity=0.311 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
+-.+.+.+++.. +.+...++|+.||+++..+...++-||.-|+|.+.
T Consensus 6 ~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 6 IDLNIIEELKKD--SRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHHC--SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 445778888654 66999999999999999999999999999999874
No 84
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=74.30 E-value=2.9 Score=31.58 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhh
Q 023564 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEG 177 (280)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEg 177 (280)
.+..++++++.+.....+++.++|+.+++.+|.|.-+..-.-|
T Consensus 7 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G 49 (113)
T 3oio_A 7 PKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLG 49 (113)
T ss_dssp HHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 3567889999998888899999999999999999988765433
No 85
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=74.25 E-value=10 Score=30.96 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=27.2
Q ss_pred ceeHHHHHHHhcccceehhhhhhhhhhccccc--cccCCceEEe
Q 023564 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIE--KTSKNHIRWK 192 (280)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe--K~~KN~i~W~ 192 (280)
.+.+.++|+.+||..+-|- -.|-+|||. +...|.|+.-
T Consensus 16 ~~~I~evA~~~gvs~~tLR----~Ye~~Gll~p~~r~~~g~R~Y 55 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIR----YYDKQGLFPFLQRNEKGDRIF 55 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHH----HHHHTTCCTTCEECTTCCEEB
T ss_pred ceeHHHHHHHHCcCHHHHH----HHHHCCCCCCCcCCCCCCeec
Confidence 5889999999999888442 226788884 4445666654
No 86
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=74.18 E-value=12 Score=29.79 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=41.1
Q ss_pred HHHHHHHHHHh---CCCCce-eHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 136 LTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
+...+...+.. .|+..+ ...++|+.|+|+|--+-..++.|+.-|+|+.....
T Consensus 9 i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~ 64 (129)
T 2ek5_A 9 IASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGI 64 (129)
T ss_dssp HHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCC
Confidence 33444444443 366677 89999999999999999999999999999987543
No 87
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=74.17 E-value=2.1 Score=35.26 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=41.0
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
..+.++...+++.+.+.++|+.|++.+=.+.-+++-||.-|+|++..
T Consensus 45 ~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 45 MTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 34555666678899999999999999999999999999999999863
No 88
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=73.47 E-value=2.7 Score=36.92 Aligned_cols=55 Identities=25% Similarity=0.422 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhh-hhhhccccccccCC
Q 023564 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITN-VLEGIGLIEKTSKN 187 (280)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItN-VLEgIGLIeK~~KN 187 (280)
+..+-++++..+-...+..+.+..+|+.||+.++.+|+.+. .|...|+|.+..+.
T Consensus 261 l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g 316 (338)
T 3pfi_A 261 FDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKG 316 (338)
T ss_dssp CCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTE
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCc
Confidence 34455777777766666789999999999999999999999 99999999887544
No 89
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=73.07 E-value=2.3 Score=32.98 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=34.9
Q ss_pred HHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 142 NLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 142 ~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.++...+ +.+...++|+.+++.+=.+.-+++-||.-|+|++..
T Consensus 46 ~~l~~~~-~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 46 VLACEQA-EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp HHHHHST-TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--
T ss_pred HHHHhCC-CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeC
Confidence 3343333 348999999999999999999999999999999863
No 90
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=73.05 E-value=2.9 Score=29.94 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhc----ccceehhhhhhhhhhcccccccc
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLE----VQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~----VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
..++.++.. .+.+...++++.|+ +.+--+|-+++.||.-|+|++..
T Consensus 12 ~~vL~~L~~--~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 12 LEVMKVIWK--HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHT--SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHc--CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 456666655 56799999999998 46788999999999999999875
No 91
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=72.84 E-value=15 Score=28.28 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=33.9
Q ss_pred CCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
..+.+...++|+.+++.+=.+.-+++-||.-|+|++.
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 4567999999999999999999999999999999983
No 92
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=72.05 E-value=3.9 Score=31.25 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
..++.++.++.+.-++..++|+++++.+.-+-=|+.-||.-|||.+.
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 45777777777777999999999999999999999999999999943
No 93
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=71.95 E-value=14 Score=29.12 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=40.9
Q ss_pred HHHHHHHHHHh---CCCCce-eHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 136 LTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+...+...+.. .|+..+ ...++|+.|+|+|=-+-..+..|+.-|||+...
T Consensus 19 I~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~ 72 (134)
T 4ham_A 19 IVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVK 72 (134)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEc
Confidence 55555555543 467777 899999999999999999999999999998664
No 94
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=71.57 E-value=3.2 Score=31.03 Aligned_cols=42 Identities=12% Similarity=0.215 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhh
Q 023564 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEG 177 (280)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEg 177 (280)
+..+.++++.+.....+++.++|+.+++.+|.|.-+..-.-|
T Consensus 3 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G 44 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRG 44 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 456788899888888899999999999999999988775443
No 95
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=71.50 E-value=3.4 Score=31.25 Aligned_cols=57 Identities=21% Similarity=0.371 Sum_probs=43.1
Q ss_pred CCCCCCcHHHHHHHH----HHHHHhCCCCceeHHHHHHHhc-ccceehhhhhhhhhhcccccccc
Q 023564 126 GCRYDSSLGLLTRKF----INLIQEAKDGTLDLNRTAEVLE-VQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 126 ~~R~d~SLglLTkkF----I~ll~~a~~g~ldLn~aA~~L~-VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.|.....|..+..++ +..+ . ++.+...++|+.++ +.+..++..++.||.-|+|++..
T Consensus 12 ~c~~~~~l~~l~~~~~~~IL~~L--~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 12 ECPVRKSMQIFAGKWTLLIIFQI--N-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp TCHHHHHHHHHTSSSHHHHHHHH--T-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHcCccHHHHHHHH--H-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEee
Confidence 444455555555432 2233 2 57799999999994 99999999999999999999874
No 96
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=71.42 E-value=2.7 Score=32.20 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=37.0
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
..+.++...++ ...++|+.+++.+=.+.-+++-||.-|+|++..
T Consensus 41 ~iL~~l~~~~~---~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 41 SILKATSEEPR---SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp HHHHHHHHSCE---EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCCC---CHHHHHHHHCCChhHHHHHHHHHHHCCCEEecc
Confidence 34455555444 999999999999999999999999999999873
No 97
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=70.95 E-value=3.5 Score=32.00 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
.+.+.+++. ++.+...++|+.+|+++.-+...++-||.-|+|.+.
T Consensus 7 ~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEK--DARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 456677754 456799999999999999999999999999999876
No 98
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=70.88 E-value=2.5 Score=31.83 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=33.0
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
+.+...++|+.|++.+-.++-+++-||.-|+|++.
T Consensus 51 ~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 36899999999999999999999999999999986
No 99
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=70.55 E-value=3.2 Score=36.30 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=35.7
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
++.+.+.++|+.+++.|--+|-+++.|+..|+|++....
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~~ 74 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADG 74 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTS
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCC
Confidence 457999999999999999999999999999999997554
No 100
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=70.32 E-value=12 Score=29.42 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=42.0
Q ss_pred HHHHHHHHHHh---CCCCce-eHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 136 LTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
+...+...+.. .|+..+ ...++|+.|+|++--+-..+..|+.-|+|++....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~ 71 (126)
T 3by6_A 16 LVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGK 71 (126)
T ss_dssp HHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 44555555543 367778 99999999999999999999999999999987544
No 101
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=70.06 E-value=3.2 Score=32.96 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
..+-.+.+.+++.. +.+...++|+.||+++..+...++-||.-|+|.+.
T Consensus 7 d~~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 7 DNLDRGILEALMGN--ARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp CHHHHHHHHHHHHC--TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceE
Confidence 34456778888654 67999999999999999999999999999999974
No 102
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=70.02 E-value=5.2 Score=31.32 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=34.1
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
+.+.+.++|+.|++.+-.++-.++.||..|+|.+...+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~g 95 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQG 95 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 66899999999999999999999999999999875433
No 103
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=69.78 E-value=1.7 Score=35.08 Aligned_cols=57 Identities=12% Similarity=0.185 Sum_probs=44.9
Q ss_pred CCCCCCcHHHHHHHH----HHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 126 GCRYDSSLGLLTRKF----INLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 126 ~~R~d~SLglLTkkF----I~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.|.....|..+..+. +..+. ++.+...++++.|++.+--+...++.||.-|||++..
T Consensus 11 ~c~~~~~l~~l~~~w~l~IL~~L~---~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~ 71 (146)
T 2f2e_A 11 SCPVARPLDVIGDGWSMLIVRDAF---EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVP 71 (146)
T ss_dssp SCTTTTTHHHHCSSSHHHHHHHHH---TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcHHHHHHHhCCchHHHHHHHHH---hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 455566677776442 23332 5678999999999999999999999999999999875
No 104
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=69.59 E-value=4 Score=36.15 Aligned_cols=51 Identities=16% Similarity=0.323 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
....+.+.++... +.+.+.++|+.|++.|-.++-+++.|+.-|+|++....
T Consensus 152 ~~~~~IL~~L~~~--~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r~ 202 (244)
T 2wte_A 152 REEMKLLNVLYET--KGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGKD 202 (244)
T ss_dssp HHHHHHHHHHHHH--TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCc
Confidence 3445566666533 45899999999999999999999999999999997443
No 105
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=69.55 E-value=3 Score=31.82 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=33.8
Q ss_pred CceeHHHHHHHh-cccceehhhhhhhhhhcccccccc
Q 023564 150 GTLDLNRTAEVL-EVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 150 g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+.+...++|+.| ++.+-.++.+++.||.-|||++..
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~ 70 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRES 70 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEee
Confidence 568999999999 999999999999999999999874
No 106
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=69.06 E-value=25 Score=27.79 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=34.9
Q ss_pred HHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 142 NLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 142 ~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.++...+++ +...++|+.|++.+=.+--+++-||.-|+|+|..
T Consensus 38 ~~L~~~~~~-~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 38 YNINRLPPE-QSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp HHHHHSCTT-SCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHcCCC-CcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeec
Confidence 334344443 4678999999999999999999999999999874
No 107
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=68.92 E-value=4.4 Score=31.43 Aligned_cols=38 Identities=16% Similarity=0.402 Sum_probs=34.7
Q ss_pred CCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
..+.+...++|+.|++.+-.++-+++-||.-|+|++..
T Consensus 54 ~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 54 DNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp SCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 34678999999999999999999999999999999863
No 108
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=68.86 E-value=2.3 Score=32.89 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=36.4
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+.+.++.. +.+.+.++|+.|++.+--++-.++.|+..|+|++..
T Consensus 25 ~IL~~L~~---~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 25 RILVALLD---GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HHHHHHHT---TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEE
T ss_pred HHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEE
Confidence 45555542 447888999999999999999999999999998753
No 109
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=68.77 E-value=3.3 Score=32.81 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
|..+-++.+.+++. ++.+...++|+.||+++..+...++-|+.-|+|.+.
T Consensus 7 ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 7 LDRVDMQLVKILSE--NSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34455678888875 477999999999999999999999999999999864
No 110
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=68.76 E-value=4.8 Score=32.48 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
-+.+-++...+++.+.+.++|+.++|..+-+..|+..|...|||+-.
T Consensus 17 l~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~ 63 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVN 63 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEc
Confidence 33444444456678999999999999999999999999999999864
No 111
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=68.45 E-value=4.9 Score=34.76 Aligned_cols=45 Identities=20% Similarity=0.405 Sum_probs=38.4
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
+.++++... ++.+.+.++|+.+++.|=-+|-+++.|+..|+|++.
T Consensus 12 ~iL~~l~~~-~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 12 EILDFIVKN-PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHHC-SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 345556544 346899999999999999999999999999999997
No 112
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=68.36 E-value=4.1 Score=32.31 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
..-.+.+.++.. ++.+...++|+.+|+++..++..++-||.-|+|.+.
T Consensus 7 ~~~~~iL~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 7 DIDRILVRELAA--DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 344567777764 467999999999999999999999999999999753
No 113
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=68.10 E-value=4 Score=32.50 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
..+-.+.+.+++.. +.+...++|+.||+++..+...++-|+.-|+|.+.
T Consensus 6 d~~~~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 6 DEIDKKIIKILQND--GKAPLREISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp CHHHHHHHHHHHHC--TTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred CHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 34446778888754 67999999999999999999999999999999873
No 114
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=67.82 E-value=3.8 Score=31.52 Aligned_cols=46 Identities=13% Similarity=0.277 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.++++++ .|.+.+.++|+.|+|+.=-|--.++.||.-|+|.|..
T Consensus 5 ~~Il~~L~~--~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLAL--QGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHH--SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 345666653 5899999999999998888888899999999999984
No 115
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=67.75 E-value=7.9 Score=32.44 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=41.7
Q ss_pred HHHHHHHHHHh---CCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 136 LTRKFINLIQE---AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 136 LTkkFI~ll~~---a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
+.....+.+.. .|+..+.-.++|+.|||+|--+=+.+..|+.-|||+.....
T Consensus 17 v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~ 71 (218)
T 3sxy_A 17 VYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRV 71 (218)
T ss_dssp HHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 33444444432 47888999999999999999999999999999999976443
No 116
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=67.65 E-value=19 Score=29.39 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=23.4
Q ss_pred ceeHHHHHHHhcccceehhhhhhhhhhcccccc--ccCCceEE
Q 023564 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK--TSKNHIRW 191 (280)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK--~~KN~i~W 191 (280)
.+.+.++|+.+||+.+-|- -.|-.|||.- ...|.++.
T Consensus 4 ~~tI~evA~~~Gvs~~tLR----~ye~~GLl~p~~r~~~g~R~ 42 (146)
T 3hh0_A 4 AWLISEFASVGDVTVRALR----YYDKINLLKPSDYTEGGHRL 42 (146)
T ss_dssp CBCHHHHHHHHTCCHHHHH----HHHHTTSSCCSEECTTSCEE
T ss_pred CCcHHHHHHHHCcCHHHHH----HHHHCCCCCCCeECCCCCEe
Confidence 4678899999999877332 2256677742 33455554
No 117
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=67.51 E-value=4.2 Score=30.10 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCC-ceeHHHHHHHhcccceehhhhhhhhhh
Q 023564 136 LTRKFINLIQEAKDG-TLDLNRTAEVLEVQKRRIYDITNVLEG 177 (280)
Q Consensus 136 LTkkFI~ll~~a~~g-~ldLn~aA~~L~VqKRRIYDItNVLEg 177 (280)
+..++++++.+.... .+++.++|+.+++++|.++-+..-.-|
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g 45 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFG 45 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 456778888777655 899999999999999999888765443
No 118
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=67.46 E-value=3.4 Score=30.91 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
.+.+++++ ..+.+.+.++|+.|+|+.=-|--.++.||.-|+|.|.
T Consensus 5 ~~Il~~L~--~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLA--LRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHH--HSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHH--HcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 34566665 3588999999999999888888889999999999998
No 119
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=67.43 E-value=2.9 Score=36.77 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=37.8
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEE
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (280)
+.+.+.++|+.+++..++++.+..+|.++|++++...+.|.-
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~~ 81 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYAN 81 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecCCCeEec
Confidence 679999999999999999999999999999999876665554
No 120
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=67.40 E-value=4.1 Score=32.79 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
|...-.+.+.+++. ++.+...++|+.||+++..++..++-||.-|+|.+.
T Consensus 8 ld~~~~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 8 LDKTDIKILQVLQE--NGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeee
Confidence 44455678888865 456899999999999999999999999999999964
No 121
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=67.09 E-value=3.8 Score=32.66 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=45.2
Q ss_pred CCCCCCcHHHHHHHHH-HHHHhCCCCceeHHHHHHHh-cccceehhhhhhhhhhcccccccc
Q 023564 126 GCRYDSSLGLLTRKFI-NLIQEAKDGTLDLNRTAEVL-EVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 126 ~~R~d~SLglLTkkFI-~ll~~a~~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.|.....|..+..++- .++..-..+.+...++++.| ++.+.-+...++.||.-|||++..
T Consensus 22 ~c~~~~~l~~l~~~w~l~IL~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 22 QCPSREVLKHVTSRWGVLILVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp TCTHHHHHHHHHSHHHHHHHHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 4555556777775542 12221125789999999999 799999999999999999999874
No 122
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=66.62 E-value=3 Score=36.90 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=42.5
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEEe
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK 192 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~ 192 (280)
..+.+. ++.+.+.++|+++++..+.++-+..+|.++|++++..+..|.-.
T Consensus 30 lf~~l~---~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~~~~y~~t 79 (332)
T 3i53_A 30 VADHIA---AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLT 79 (332)
T ss_dssp HHHHHH---TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEEC
T ss_pred hHHHHh---cCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecCCCeEEcC
Confidence 445553 36899999999999999999999999999999999877766653
No 123
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=66.53 E-value=5.7 Score=32.93 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 137 TRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 137 TkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
.-+.+.++...+++.+...++|+.+++.+.-+.-|+..|..-|+|+-.
T Consensus 14 Alr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 14 AVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 344555565566788999999999999999999999999999999754
No 124
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=65.73 E-value=3.7 Score=31.85 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhh
Q 023564 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEG 177 (280)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEg 177 (280)
.+..++++++.+.....+++.++|+.+++++|.|.-+..-.-|
T Consensus 11 ~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G 53 (129)
T 1bl0_A 11 ITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETG 53 (129)
T ss_dssp HHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 4678899999988888899999999999999999888764433
No 125
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=65.27 E-value=6 Score=34.67 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=39.5
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEEecCC
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSD 195 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~ 195 (280)
++.+.+.++|+.+|+.|=-+|-+++.|+..|+|++.....-...|..
T Consensus 19 ~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~ 65 (260)
T 3r4k_A 19 RLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSYRLGPQ 65 (260)
T ss_dssp BSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEEEECTT
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHH
Confidence 47899999999999999999999999999999999865333344643
No 126
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=64.60 E-value=6 Score=29.48 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCCC-CceeHHHHHHHhcccceehhhhhhhhh
Q 023564 136 LTRKFINLIQEAKD-GTLDLNRTAEVLEVQKRRIYDITNVLE 176 (280)
Q Consensus 136 LTkkFI~ll~~a~~-g~ldLn~aA~~L~VqKRRIYDItNVLE 176 (280)
...+.++++.+... ..+++.++|+.+++++|.+.-+..-.-
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 45 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQL 45 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35678889988887 899999999999999999988776443
No 127
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=64.29 E-value=11 Score=28.98 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHh---CCCCce-eHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 135 LLTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 135 lLTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
.+...+...+.. .++..+ ...++|+.|+|++--+-..++.|+.-|+|+.....
T Consensus 13 ~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~ 69 (113)
T 3tqn_A 13 QLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGL 69 (113)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 345555566643 366677 89999999999999999999999999999877443
No 128
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=64.12 E-value=4.5 Score=31.86 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
.+.+.+++ .++.+...++|+.||+++-.+...++.||.-|+|++.
T Consensus 6 ~~il~~L~--~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 6 LRILKILQ--YNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHT--TCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 45666665 4567999999999999999999999999999999973
No 129
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=64.03 E-value=11 Score=28.02 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHh---CCCCce-eHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 133 LGLLTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 133 LglLTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
...+...+...+.. .++..+ ...++|+.|+|++--+...+..|+.-|+|++....
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g~ 71 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGAL 71 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTT
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 34455555555543 356667 99999999999999999999999999999877533
No 130
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=64.00 E-value=8.5 Score=31.43 Aligned_cols=51 Identities=20% Similarity=0.374 Sum_probs=41.1
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEEe
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK 192 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~ 192 (280)
+.+.++. .+.+.+.++|+.|++.+-.++-.+.+|+..|||++....+..|.
T Consensus 62 ~IL~~L~---~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y 112 (151)
T 3f6v_A 62 RLVQLLT---SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYY 112 (151)
T ss_dssp HHHHHGG---GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEE
Confidence 3455554 46699999999999999999999999999999997755544443
No 131
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=63.83 E-value=16 Score=28.61 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHh---CCCCce-eHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 135 LLTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 135 lLTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
.+...+...+.. .|+..+ ...++|+.|+|++--+-..+..|+.-|+|++....
T Consensus 17 ~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~ 73 (125)
T 3neu_A 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGM 73 (125)
T ss_dssp HHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCC
Confidence 355566666643 366677 59999999999999999999999999999987543
No 132
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=63.68 E-value=15 Score=31.60 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=42.4
Q ss_pred HHHHHHHHHHh---CCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccC
Q 023564 136 LTRKFINLIQE---AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (280)
Q Consensus 136 LTkkFI~ll~~---a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (280)
+...+.+.+-. .|+..+...++|+.|||+|=-+-+-+..|+.-|||+....
T Consensus 31 v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~ 84 (237)
T 3c7j_A 31 IEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETH 84 (237)
T ss_dssp HHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 44555555543 4788899999999999999999999999999999998743
No 133
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=63.65 E-value=8 Score=34.17 Aligned_cols=42 Identities=7% Similarity=0.142 Sum_probs=35.8
Q ss_pred HHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccc
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 183 (280)
+.+.++.. +.+...++|+.+++.+--++-.+++|+.-|||+.
T Consensus 16 ~IL~~L~~---g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 16 DLLSHLTC---MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHHHTT---TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 35556642 5678889999999999999999999999999997
No 134
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=63.56 E-value=4.4 Score=32.07 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=33.5
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhccccccccC
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (280)
.-+...++|+.+++..+.+..+++-||.-|+|++...
T Consensus 50 ~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 50 LFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp SSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 3379999999999999999999999999999999744
No 135
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=62.80 E-value=21 Score=29.07 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=29.7
Q ss_pred CceEEecCCCCCCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023564 187 NHIRWKGSDSLGTSK-------LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (280)
Q Consensus 187 N~i~W~G~~~s~~~~-------~~~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lt 238 (280)
.-+.|.|.+..--.. +..++..|+..++.|......+.+.|..+...|+.+.
T Consensus 81 ~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 81 NAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred EEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888866432112 2334455555666666666666666666666666554
No 136
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=62.76 E-value=4.3 Score=30.97 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=33.6
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+.+...++|+.+++.+-.++-+++-||.-|+|++..
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 478999999999999999999999999999999863
No 137
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=62.58 E-value=3.9 Score=37.06 Aligned_cols=44 Identities=11% Similarity=0.280 Sum_probs=39.0
Q ss_pred CCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCc-eEE
Q 023564 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNH-IRW 191 (280)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~-i~W 191 (280)
+++.+.+.++|+++++..|.++.+..+|.++|++++...+. |.-
T Consensus 68 ~~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~~~~~y~~ 112 (369)
T 3gwz_A 68 QEGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFAQ 112 (369)
T ss_dssp TTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTEEEC
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeCCCceEec
Confidence 46789999999999999999999999999999999976665 443
No 138
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=62.49 E-value=7.6 Score=33.78 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=38.9
Q ss_pred HHHHHHHHh--CCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 138 RKFINLIQE--AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 138 kkFI~ll~~--a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.|-+.++.. ..++.+.+.++|+.+++.|=-+|-+++.|+..|+|++..
T Consensus 14 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~~ 63 (257)
T 2g7u_A 14 ERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSG 63 (257)
T ss_dssp HHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC
Confidence 344444432 234678999999999999999999999999999999974
No 139
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=62.22 E-value=3.7 Score=35.82 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=36.1
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceE
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (280)
++.+++.++|+++++..++++.+..+|.++|++++. .+.|.
T Consensus 37 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~-~~~y~ 77 (335)
T 2r3s_A 37 QGIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ-AEGYR 77 (335)
T ss_dssp TSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred cCCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec-CCEEe
Confidence 478999999999999999999999999999999874 44444
No 140
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=62.07 E-value=5.8 Score=32.74 Aligned_cols=50 Identities=24% Similarity=0.335 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
|..+-++.+.+++.. +.+...++|+.||+++-.+...++-||.-|+|++.
T Consensus 15 ld~~d~~IL~~L~~~--~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 15 LDDLDRNILRLLKKD--ARLTISELSEQLKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 445556788888754 57999999999999999999999999999999864
No 141
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=62.06 E-value=9.3 Score=30.01 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=33.5
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhccccccccC
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (280)
+.+...++|+.|+|.+=.+-.+++.||.-|+|++...
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 89 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW 89 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 4578899999999999999999999999999998743
No 142
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=61.18 E-value=17 Score=27.32 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhcccce-ehhhhhhhhhhccccccccCCceEEe
Q 023564 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKR-RIYDITNVLEGIGLIEKTSKNHIRWK 192 (280)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKR-RIYDItNVLEgIGLIeK~~KN~i~W~ 192 (280)
...-.+.+.+++.. |.....++|+.|++.+= -+=-.+..||.=|+|++.+.++-.|.
T Consensus 10 ~~~~~~IL~~Lk~~--g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP~w~ 67 (79)
T 1xmk_A 10 AEIKEKICDYLFNV--SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWH 67 (79)
T ss_dssp HHHHHHHHHHHHHT--CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEE
T ss_pred hhHHHHHHHHHHHc--CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCCCeE
Confidence 35567888888865 45789999999999874 77778889999999998877666884
No 143
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=60.95 E-value=27 Score=24.37 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023564 203 DDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (280)
Q Consensus 203 ~~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lte 239 (280)
...+..|+.+--.|+..|+.|+..|..+...+..|..
T Consensus 9 rkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 4567788888888999999999999999999887753
No 144
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=60.85 E-value=4.3 Score=36.20 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=39.5
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCC--ceEE
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN--HIRW 191 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN--~i~W 191 (280)
.++.+. ++.+.+.++|+.+++..+.++-++.+|..+|++++...+ .|.-
T Consensus 41 i~~~l~---~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~ 91 (374)
T 1qzz_A 41 LVDHLL---AGADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRP 91 (374)
T ss_dssp HHHHHH---TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEE
T ss_pred hHHHHh---CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeCCCCeEEEE
Confidence 444553 367999999999999999999999999999999986555 4544
No 145
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=60.77 E-value=10 Score=30.08 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=29.3
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
++.+...++|+.+++.+=.+--+++-||.-|||++.
T Consensus 50 ~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 50 GIDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp ----CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC--
T ss_pred CCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 467999999999999999999999999999999654
No 146
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=60.64 E-value=6.8 Score=32.39 Aligned_cols=50 Identities=24% Similarity=0.407 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
|..+-.+.+.+++. ++.+...++|+.||++...+...++-||.-|+|++.
T Consensus 25 ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 25 LDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 45566788888875 467999999999999999999999999999999873
No 147
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=60.53 E-value=3.4 Score=31.97 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=34.1
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.+...++|+.|++.+-.+.-+++-||.-|+|++..
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 3568999999999999999999999999999999874
No 148
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=59.90 E-value=5.4 Score=29.98 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhc----ccceehhhhhhhhhhcccccccc
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLE----VQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~----VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
...+.++.. .+.+...++|+.++ +.+=.+|-+++.||.-|+|++..
T Consensus 13 ~~vL~~l~~--~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 13 WEVMNIIWM--KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHHH--HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHh--CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEe
Confidence 345555554 45699999999999 66999999999999999999874
No 149
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=59.88 E-value=31 Score=26.21 Aligned_cols=75 Identities=12% Similarity=0.251 Sum_probs=39.3
Q ss_pred HhcccceehhhhhhhhhhccccccccCCceEEecCCCCC-C-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023564 160 VLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLG-T-----SKLDDQVARLKAEIESLHAEECRIDDSIREKQEL 233 (280)
Q Consensus 160 ~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~~s~-~-----~~~~~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~ 233 (280)
.|..+++.+-++..-|+.+ . .....|+=+|.-... + ..+...+..+..+++.|..+...+...+..++..
T Consensus 31 ~l~~~~~e~~~~~~eL~~l---~-~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 31 KVQLELTEAKKALDEIESL---P-DDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTS---C-TTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC---C-CCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555544 3 233455556632111 1 1223344555666666666666666666666666
Q ss_pred HHHhh
Q 023564 234 IRTLE 238 (280)
Q Consensus 234 L~~Lt 238 (280)
|..+.
T Consensus 107 l~~~~ 111 (117)
T 2zqm_A 107 IQSAL 111 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 150
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=59.30 E-value=4.2 Score=36.42 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=37.7
Q ss_pred CCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEE
Q 023564 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (280)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (280)
.++.+.+.++|+++++..|.++.+..+|.++|++++ ..+.|.=
T Consensus 52 ~~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~-~~~~y~~ 94 (348)
T 3lst_A 52 VDGPRTPAELAAATGTDADALRRVLRLLAVRDVVRE-SDGRFAL 94 (348)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEE
T ss_pred hCCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe-cCCEEec
Confidence 457899999999999999999999999999999999 5555443
No 151
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=59.00 E-value=45 Score=28.09 Aligned_cols=44 Identities=25% Similarity=0.504 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
.+.+.++. ++.+...++|+.+++++--++-.++.||.-|+|++.
T Consensus 23 ~~IL~~L~---~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 23 RKILKLLR---NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45666665 367999999999999999999999999999999987
No 152
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=58.94 E-value=5.3 Score=29.97 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=33.6
Q ss_pred CCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
++..+...++|+.|||.+=-+...++.|+.-|+|+..
T Consensus 30 ~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3435899999999999999999999999999999876
No 153
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=58.69 E-value=7 Score=31.61 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=44.6
Q ss_pred CCCCCCcHHHHHHH--HHHHHHhCCCCceeHHHHHHHh-cccceehhhhhhhhhhcccccccc
Q 023564 126 GCRYDSSLGLLTRK--FINLIQEAKDGTLDLNRTAEVL-EVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 126 ~~R~d~SLglLTkk--FI~ll~~a~~g~ldLn~aA~~L-~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.|-....|..|..+ +.-+..-. .|....+++++.+ ++.++-+...+..||.-|||+|..
T Consensus 13 ~Cpi~~~l~~lg~kW~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~ 74 (131)
T 4a5n_A 13 GSPVEFTLDVIGGKWKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREV 74 (131)
T ss_dssp CCHHHHHHHHHCSSSHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcHHHHHHHHcCcCHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEe
Confidence 34445556666544 22222223 7889999999999 999999999999999999999984
No 154
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=58.58 E-value=9.1 Score=33.51 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=38.1
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEEecCC
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSD 195 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~ 195 (280)
.+.+.+.++|+.+++.|--+|-+++.|+..|+|++.. ..|. .|..
T Consensus 34 ~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~~-~~Y~-Lg~~ 78 (265)
T 2ia2_A 34 NQRRTLSDVARATDLTRATARRFLLTLVELGYVATDG-SAFW-LTPR 78 (265)
T ss_dssp CSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESS-SEEE-ECGG
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CEEE-EcHH
Confidence 4679999999999999999999999999999999973 4443 4543
No 155
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=58.27 E-value=25 Score=28.42 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=21.5
Q ss_pred eeHHHHHHHhcccceehhhhhhhhhhcccccc--ccCCceEE
Q 023564 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK--TSKNHIRW 191 (280)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK--~~KN~i~W 191 (280)
+.+.++|+.+||+.+-|- -.|-+|||.- ...|.+++
T Consensus 3 ~~I~e~A~~~gvs~~tLR----~Ye~~GLl~p~~r~~~g~R~ 40 (142)
T 3gp4_A 3 LNIKEASEKSGVSADTIR----YYERIGLIPPIHRNESGVRK 40 (142)
T ss_dssp BCHHHHHHHHTSCHHHHH----HHHHHTSSCCCCBCTTSCBC
T ss_pred CcHHHHHHHHCcCHHHHH----HHHHCCCCCCCcCCCCCCee
Confidence 567888999998777332 1255566653 33444443
No 156
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=58.26 E-value=25 Score=25.00 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023564 205 QVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (280)
Q Consensus 205 ~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lt 238 (280)
.+..|+.+++.|..+-..|...|..+++++..|.
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888888888888888888888888877664
No 157
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=56.61 E-value=3.2 Score=31.35 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=32.7
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
+.+...++|+.+++.+-.++.+++-||.-|+|++.
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 45789999999999999999999999999999986
No 158
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=55.40 E-value=5.6 Score=28.01 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=23.9
Q ss_pred CCCceeHHHHHHHhcccceehhhhhh
Q 023564 148 KDGTLDLNRTAEVLEVQKRRIYDITN 173 (280)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItN 173 (280)
++..+.+.++|+.|||+|..||..++
T Consensus 7 ~~~~l~~~eva~~lgvsrstiy~~~~ 32 (66)
T 1z4h_A 7 PDSLVDLKFIMADTGFGKTFIYDRIK 32 (66)
T ss_dssp SSSEECHHHHHHHHSSCHHHHHHHHH
T ss_pred cccccCHHHHHHHHCcCHHHHHHHHH
Confidence 45689999999999999999999987
No 159
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=54.83 E-value=6.4 Score=34.96 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=38.0
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEEe
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK 192 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~ 192 (280)
++.+.+.++|+.+++..+.++-+..+|...|++++.....|.-.
T Consensus 50 ~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~~g~y~~t 93 (360)
T 1tw3_A 50 AGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPT 93 (360)
T ss_dssp TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecCCCeEEeC
Confidence 46789999999999999999999999999999998655555543
No 160
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=54.82 E-value=5.6 Score=30.64 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=35.1
Q ss_pred CCCCce-eHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 147 AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 147 a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+++.+ ...++|+.|+|++=-+-..+..|+.-|+|++..
T Consensus 38 ~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 38 DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 356666 999999999999999999999999999999875
No 161
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=54.51 E-value=5.7 Score=30.49 Aligned_cols=54 Identities=24% Similarity=0.380 Sum_probs=41.1
Q ss_pred CCcHHHHHHH----HHHHHHhCCCCcee--HHHHHHHh-cccceehhhhhhhhhhccccccccC
Q 023564 130 DSSLGLLTRK----FINLIQEAKDGTLD--LNRTAEVL-EVQKRRIYDITNVLEGIGLIEKTSK 186 (280)
Q Consensus 130 d~SLglLTkk----FI~ll~~a~~g~ld--Ln~aA~~L-~VqKRRIYDItNVLEgIGLIeK~~K 186 (280)
...|..|..+ .+..+ . .|... ..++++.+ ++.+..+...+..||.-|||++...
T Consensus 18 ~~~l~~l~~~wrl~IL~~L--~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 18 ESVLHLLGKKYTMLIISVL--G-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp SSTHHHHHSTTHHHHHHHH--T-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHcCccHHHHHHHH--h-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 4456666533 22233 2 45555 99999999 9999999999999999999999754
No 162
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=54.27 E-value=15 Score=29.59 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCC-CCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 137 TRKFINLIQEAK-DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 137 TkkFI~ll~~a~-~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
.-+.+-++-..+ ++.+.+.++|+.+++.++-+..|+..|..-|||+-.
T Consensus 13 Al~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~ 61 (143)
T 3t8r_A 13 GLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSV 61 (143)
T ss_dssp HHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEec
Confidence 334455554444 457999999999999999999999999999999843
No 163
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=53.59 E-value=7.9 Score=35.80 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=39.8
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
++..|.+.+++.+.+.++|+.|++.+=.+=-+++-||.-|||+|..
T Consensus 409 vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~ 454 (487)
T 1hsj_A 409 ILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKR 454 (487)
T ss_dssp HHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEE
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 4445555566889999999999999999999999999999999973
No 164
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=53.46 E-value=14 Score=27.89 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc--CCceEEec
Q 023564 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS--KNHIRWKG 193 (280)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~--KN~i~W~G 193 (280)
+...||++++.. .++.|.++|..+++..--.-|=++-||..|.|+=.- ...|.++.
T Consensus 8 ll~~Fi~yIk~~--Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 8 FLTEFINYIKKS--KVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHHHHC--SEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHHHHc--CeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 448999999854 789999999999997766667778888877766432 34444443
No 165
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=53.03 E-value=8.6 Score=28.23 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=32.4
Q ss_pred CCCceeHHHHHHHhcccceehhhhhhhhhhcccccc
Q 023564 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (280)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 183 (280)
+++.+.+.++|+.|++.+=.++-+++.||.-|+|..
T Consensus 27 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~ 62 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVEC 62 (95)
T ss_dssp TTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccC
Confidence 344699999999999999999999999999999943
No 166
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=52.30 E-value=46 Score=24.90 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=33.5
Q ss_pred HhcccceehhhhhhhhhhccccccccCCceEEecCCCCCCchhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023564 160 VLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTSKLDDQ-------VARLKAEIESLHAEECRIDDSIREKQE 232 (280)
Q Consensus 160 ~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~~s~~~~~~~~-------~~~Lk~El~~L~~eE~~LD~~I~~~~~ 232 (280)
.+..+++..-++..-|+.+ .- ....|+-+|.- +-....+.- +..+..+++.|..+...+...+..++.
T Consensus 26 ~l~~~~~e~~~~~~EL~~l---~~-d~~vy~~iG~v-fv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 26 TVEMQINETQKALEELSRA---AD-DAEVYKSSGNI-LIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHS---CT-TCCEEEEETTE-EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC---CC-CchHHHHHhHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555544 32 23355556632 111122333 334444555555555555555555555
Q ss_pred HHHH
Q 023564 233 LIRT 236 (280)
Q Consensus 233 ~L~~ 236 (280)
.|..
T Consensus 101 ~l~~ 104 (107)
T 1fxk_A 101 NIQE 104 (107)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5544
No 167
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=51.92 E-value=8.1 Score=34.52 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=36.8
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEE
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (280)
++.+.+.++|+++++..++++.++.+|.++|++++.. +.|.-
T Consensus 62 ~~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~-~~y~~ 103 (359)
T 1x19_A 62 EGPKDLATLAADTGSVPPRLEMLLETLRQMRVINLED-GKWSL 103 (359)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred CCCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeC-CeEec
Confidence 4789999999999999999999999999999999874 34443
No 168
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=51.82 E-value=60 Score=27.76 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhcccc--ccc-cCCceEEecCCCCCCchhHHHHHHHHHH-------------
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLI--EKT-SKNHIRWKGSDSLGTSKLDDQVARLKAE------------- 212 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLI--eK~-~KN~i~W~G~~~s~~~~~~~~~~~Lk~E------------- 212 (280)
...+.+.++|+.+||+.|.|- -.|.+||+ .+. ..|.|+.-..+ .-..-..+..|++-
T Consensus 3 ~~~~~i~e~a~~~gvs~~tlr----~y~~~gll~p~~~d~~~g~R~y~~~---~~~~l~~i~~l~~~g~~l~~i~~~~~~ 75 (278)
T 1r8e_A 3 ESYYSIGEVSKLANVSIKALR----YYDKIDLFKPAYVDPDTSYRYYTDS---QLIHLDLIKSLKYIGTPLEEMKKAQDL 75 (278)
T ss_dssp CCEEEHHHHHHHHTCCHHHHH----HHHHTTSSCCSEECTTTCCEEEETG---GGGHHHHHHHHHHTTCCHHHHHHHTTS
T ss_pred CCcEeHHHHHHHHCcCHHHHH----HHHHCCCCCCCccCCCCCccccCHH---HHHHHHHHHHHHHCCCCHHHHHHHHHh
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023564 213 -----IESLHAEECRIDDSIREKQELIRTLEE 239 (280)
Q Consensus 213 -----l~~L~~eE~~LD~~I~~~~~~L~~Lte 239 (280)
.+-|.++.+.|++.|+.+++.+..|..
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (278)
T 1r8e_A 76 EMEELFAFYTEQERQIREKLDFLSALEQTISL 107 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 169
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=51.57 E-value=7.7 Score=32.36 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=34.2
Q ss_pred CCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 147 AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 147 a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
..+....+.++|+.|++.+--++..++.||.-|+|++..
T Consensus 20 ~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 20 KNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp HHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC-
T ss_pred HhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecC
Confidence 345578999999999998889999999999999999864
No 170
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=51.35 E-value=11 Score=29.54 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=35.2
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
.+..=..|...+++++.+.+-..+.+.++|+..||.|.-||-
T Consensus 29 ~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~ 70 (218)
T 3dcf_A 29 GNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYY 70 (218)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHH
Confidence 344446788889999988887889999999999999999994
No 171
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=51.34 E-value=7.4 Score=31.56 Aligned_cols=40 Identities=10% Similarity=-0.009 Sum_probs=35.0
Q ss_pred HhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 145 QEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 145 ~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
.+....-.+..++|+++++..+-++.+++-|+.=|+|++.
T Consensus 45 ~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 45 LEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp HTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3334456799999999999999999999999999999985
No 172
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=51.30 E-value=11 Score=30.57 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 137 TRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 137 TkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
-++.+.+++ .++.+...++|+.||++.-.+..-++-||.-|+|.+.
T Consensus 5 d~~il~~L~--~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 5 DRKILRILQ--EDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHT--TCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHH--HCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeec
Confidence 356777775 4677899999999999999999999999999999964
No 173
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=50.93 E-value=11 Score=34.07 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc-cCCceEEe
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT-SKNHIRWK 192 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~-~KN~i~W~ 192 (280)
.+.+.+++ .++.+...++|+.|+|+++-|+--++.|+..|++... ...-|+..
T Consensus 8 ~~Il~~L~--~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~~~g~GY~l~ 61 (321)
T 1bia_A 8 LKLIALLA--NGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSLP 61 (321)
T ss_dssp HHHHHHHT--TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEECS
T ss_pred HHHHHHHH--cCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEecCCCcEEe
Confidence 45666664 5678999999999999999999999999999988532 22245554
No 174
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=50.84 E-value=40 Score=23.62 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023564 205 QVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (280)
Q Consensus 205 ~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lt 238 (280)
.+..|+.+++.|..+-..|...|..+++++..|.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888888888877764
No 175
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=50.55 E-value=12 Score=29.72 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=35.4
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
.+..=..|....++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 26 ~~~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~ 67 (215)
T 2qko_A 26 NPERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASN 67 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHH
T ss_pred cHHHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHH
Confidence 344446788889999998888889999999999999999995
No 176
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=50.48 E-value=16 Score=28.71 Aligned_cols=46 Identities=13% Similarity=0.261 Sum_probs=39.6
Q ss_pred HHHHHHhCCCCceeHHHHHHHh-----cccceehhhhhhhhhhccccccccC
Q 023564 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTSK 186 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~~K 186 (280)
.++++.++ ++.++..++.+.| ++.+=-+|-.++.|+..|+|.+..-
T Consensus 16 Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 16 ISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 56677654 5679999999999 7899999999999999999998753
No 177
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=50.23 E-value=6.5 Score=30.98 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=41.4
Q ss_pred HHHHHHHHHHh---CCCCce-eHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 136 LTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
+...+...+.. .|+..+ ...++|+.|+|+|--+-..+..|+.-|+|+.....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~~ 71 (126)
T 3ic7_A 16 IADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRGI 71 (126)
T ss_dssp HHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcCC
Confidence 45555555543 466777 89999999999999999999999999999987544
No 178
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=49.82 E-value=11 Score=33.29 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=38.3
Q ss_pred HHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 141 INLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 141 I~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+..+...+++.+...++|+.+++.+=.+--+++-||.-|+|+|..
T Consensus 164 L~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~ 208 (250)
T 1p4x_A 164 LAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKER 208 (250)
T ss_dssp HHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEE
T ss_pred HHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeC
Confidence 444444555579999999999999999999999999999999974
No 179
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=49.58 E-value=5.3 Score=29.42 Aligned_cols=30 Identities=10% Similarity=0.004 Sum_probs=25.4
Q ss_pred ceeHHHHHHHhcccceehhhhhhhhhhccc
Q 023564 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGL 180 (280)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGL 180 (280)
-..+.++|..+||.+.-||-++.-...-|.
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHhhcCc
Confidence 367999999999999999999987766544
No 180
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=49.00 E-value=62 Score=27.98 Aligned_cols=98 Identities=15% Similarity=0.186 Sum_probs=55.1
Q ss_pred CCCcHHHHHHHHHHHHH-hCCCCc---------------eeHHHHHHHhcc-cceehhhhhhhhhhccccccccCCceEE
Q 023564 129 YDSSLGLLTRKFINLIQ-EAKDGT---------------LDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (280)
Q Consensus 129 ~d~SLglLTkkFI~ll~-~a~~g~---------------ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (280)
++.+...|-+.|-.+.. -.||-. ..|++|=+.|.- .+|+.||. -|.|+.+-+..
T Consensus 55 ~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~--~l~G~~~~~e~------- 125 (207)
T 3bvo_A 55 FRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL--KLHGIEIPERT------- 125 (207)
T ss_dssp SCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH--HHTTCCCCSSC-------
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH--HhcCCCccccc-------
Confidence 45678889999988875 344432 357777777775 78889997 45566554321
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhh
Q 023564 192 KGSDSLGTSKLDDQVARLKAEIES------LHAEECRIDDSIREKQELIRTLE 238 (280)
Q Consensus 192 ~G~~~s~~~~~~~~~~~Lk~El~~------L~~eE~~LD~~I~~~~~~L~~Lt 238 (280)
....+.+.--++-++++++++ |..-+.++++.++++.++|....
T Consensus 126 ---~~~~d~~fLme~me~~E~le~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~ 175 (207)
T 3bvo_A 126 ---DYEMDRQFLIEIMEINEKLAEAESEAAMKEIESIVKAKQKEFTDNVSSAF 175 (207)
T ss_dssp ---SSSSCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111222223345555554 34444555555555555555544
No 181
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=48.24 E-value=54 Score=23.04 Aligned_cols=38 Identities=24% Similarity=0.484 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023564 203 DDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEEN 240 (280)
Q Consensus 203 ~~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lted 240 (280)
...+..|+.++..|...-..|-+.++...++|..|.+.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999888654
No 182
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=48.04 E-value=9.3 Score=34.49 Aligned_cols=36 Identities=11% Similarity=0.003 Sum_probs=33.9
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
++.+.+.++|+++++..|.++.++.+|.++|++++.
T Consensus 48 ~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~ 83 (363)
T 3dp7_A 48 REGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE 83 (363)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec
Confidence 478999999999999999999999999999999875
No 183
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=47.90 E-value=13 Score=29.30 Aligned_cols=47 Identities=17% Similarity=0.408 Sum_probs=39.3
Q ss_pred HHHHHHHhCCCCceeHHHHHHHh-----cccceehhhhhhhhhhcccccccc
Q 023564 139 KFINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 139 kFI~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
..++++.+++++.+...++.+.| .+.+=-+|-.++.|+..|+|.+..
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 35667766554789999999999 788999999999999999999875
No 184
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=46.79 E-value=10 Score=26.84 Aligned_cols=41 Identities=17% Similarity=0.433 Sum_probs=28.5
Q ss_pred EecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023564 191 WKGSDSLGTSKLDDQVARLKAEIESLHAEECRIDDSIREKQELI 234 (280)
Q Consensus 191 W~G~~~s~~~~~~~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L 234 (280)
++|-+ +.+++.-+..+..+++.|..+-..|.+.+..++++|
T Consensus 17 ~rGY~---~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 17 FRGYD---EDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp TTEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555 457888888888899998888888888888776654
No 185
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=46.77 E-value=12 Score=26.25 Aligned_cols=40 Identities=13% Similarity=0.294 Sum_probs=29.1
Q ss_pred ceeHHHHHHHhcccceehhhhhhhhhhccccccccC--CceEEec
Q 023564 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK--NHIRWKG 193 (280)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K--N~i~W~G 193 (280)
.++..++|+.|||+++.||..+.- |+ -+.+... .++.|.-
T Consensus 2 ~lt~~e~a~~LgvS~~Tl~rw~~~--G~-P~~~~~g~~~~~~y~~ 43 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQEQ--GM-PVLRGGGKGNEVLYDS 43 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHTTT--TC-CCSSCCCSSSCCEEEH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHC--CC-CeEeeCCCcceEEECH
Confidence 478899999999999999999864 65 3333333 3667753
No 186
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=46.76 E-value=13 Score=29.33 Aligned_cols=52 Identities=12% Similarity=0.217 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHh--cccceehhhhhhhhhhccccccccCC
Q 023564 134 GLLTRKFINLIQEAKDGTLDLNRTAEVL--EVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L--~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
...-++.+.++.. ++.+...++|+.+ ++++-.+-.-+.+|+.-|||++....
T Consensus 12 d~~d~~IL~~L~~--~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg 65 (111)
T 3b73_A 12 TIWDDRILEIIHE--EGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANG 65 (111)
T ss_dssp CHHHHHHHHHHHH--HSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTT
T ss_pred CHHHHHHHHHHHH--cCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCc
Confidence 3444778888864 3579999999999 99999999999999999999987544
No 187
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.70 E-value=43 Score=23.48 Aligned_cols=32 Identities=9% Similarity=0.178 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023564 204 DQVARLKAEIESLHAEECRIDDSIREKQELIR 235 (280)
Q Consensus 204 ~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~ 235 (280)
..+..|+.|++.|+.+-..|-+.+.++..+|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999988888888888887765
No 188
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=46.26 E-value=42 Score=23.66 Aligned_cols=34 Identities=21% Similarity=0.443 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023564 205 QVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (280)
Q Consensus 205 ~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lt 238 (280)
.+..|+.+++.|..+-..|...|..+++++..|.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888888888888887764
No 189
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=45.91 E-value=9.4 Score=32.30 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.5
Q ss_pred CCCceeHHHHHHHhcccceehhhhhh
Q 023564 148 KDGTLDLNRTAEVLEVQKRRIYDITN 173 (280)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItN 173 (280)
.+..+.+.++|+.|+|.+.|+|+.+.
T Consensus 28 ~~~~LTv~EVAe~LgVs~srV~~LIr 53 (148)
T 2kfs_A 28 DEPTYDLPRVAELLGVPVSKVAQQLR 53 (148)
T ss_dssp TSCEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred cCceEcHHHHHHHhCCCHHHHHHHHH
Confidence 44789999999999999999999865
No 190
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=45.89 E-value=16 Score=31.02 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhh
Q 023564 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITN 173 (280)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItN 173 (280)
+..+|++++.+.....+.|.++|+.+++++|.+..+.-
T Consensus 170 ~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 57889999999998999999999999999999988764
No 191
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=45.61 E-value=53 Score=23.42 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023564 206 VARLKAEIESLHAEECRIDDSIREKQELIRTL 237 (280)
Q Consensus 206 ~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~L 237 (280)
...|..+++.|..+-..|...|..++..+..|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777776666554
No 192
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=45.49 E-value=12 Score=33.41 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=38.8
Q ss_pred HHHHHhCCCCceeHHHHHHHhcc---cceehhhhhhhhhhccccccc--cCCceEE
Q 023564 141 INLIQEAKDGTLDLNRTAEVLEV---QKRRIYDITNVLEGIGLIEKT--SKNHIRW 191 (280)
Q Consensus 141 I~ll~~a~~g~ldLn~aA~~L~V---qKRRIYDItNVLEgIGLIeK~--~KN~i~W 191 (280)
.+.+... ++.+.+.++|+++++ ..++++.+..+|.++|++++. ..+.|.-
T Consensus 42 f~~L~~~-~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~ 96 (352)
T 1fp2_A 42 PNIIQNH-GKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYAL 96 (352)
T ss_dssp HHHHHHH-TSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEE
T ss_pred hhhhhhc-CCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEecCCCCeEeC
Confidence 3444332 357999999999999 588999999999999999987 3445544
No 193
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=45.09 E-value=18 Score=28.29 Aligned_cols=47 Identities=11% Similarity=0.170 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhc----ccceehhhhhhhhhhcccccccc
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLE----VQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~----VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
..++.++... .+.+...++++.|+ +.+=-+|-+++-||.-|+|++..
T Consensus 12 ~~vL~~L~~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 12 RAVMDHLWSR-TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHTC-SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHhc-CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 3456666543 35799999999998 78889999999999999999874
No 194
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=44.29 E-value=12 Score=32.15 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=40.5
Q ss_pred HHHHHHHHh---CCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccC
Q 023564 138 RKFINLIQE---AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (280)
Q Consensus 138 kkFI~ll~~---a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (280)
....+.+.. .|+..+.-.++|+.|||+|--+=+.+..|+.-|||+....
T Consensus 35 ~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~ 86 (239)
T 2hs5_A 35 GILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELN 86 (239)
T ss_dssp HHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 444444432 4788899999999999999999999999999999997754
No 195
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=44.16 E-value=12 Score=31.47 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=40.8
Q ss_pred HHHHHHHHHHh---CCCCce-eHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 136 LTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+.....+.+.. .|+..+ .-.++|+.|||+|=-+=+.+..|+.-|||+...
T Consensus 12 v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~ 65 (239)
T 1hw1_A 12 AEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQH 65 (239)
T ss_dssp HHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEec
Confidence 33444555543 377888 799999999999999999999999999999764
No 196
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=43.88 E-value=16 Score=30.18 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=35.8
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhh
Q 023564 127 CRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDIT 172 (280)
Q Consensus 127 ~R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDIt 172 (280)
.|...+=..|..-.++++.+..-.-+.+.++|+.+||.+.-||--.
T Consensus 21 ~r~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~~F 66 (211)
T 3fiw_A 21 GMTKMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYWYF 66 (211)
T ss_dssp ---CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHTTC
T ss_pred cccccCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHc
Confidence 3344455678888899998777778999999999999999999543
No 197
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=43.56 E-value=10 Score=30.95 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=35.6
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhh
Q 023564 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDI 171 (280)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDI 171 (280)
.+..-..|....++++.+.+-..+.+.++|++.||.|.-||--
T Consensus 41 ~~~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~ 83 (229)
T 3bni_A 41 SAERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYRF 83 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHHH
Confidence 3344456788899999888888899999999999999999953
No 198
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=43.42 E-value=17 Score=30.14 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhC-CCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 136 LTRKFINLIQEA-KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 136 LTkkFI~ll~~a-~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
..-+.+-++-.. +++.+.+.++|+.+++..+-+..|+..|..-|||+-.
T Consensus 28 yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~ 77 (159)
T 3lwf_A 28 YGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSI 77 (159)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 333444444433 4568999999999999999999999999999999854
No 199
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=43.22 E-value=37 Score=24.98 Aligned_cols=35 Identities=6% Similarity=0.109 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023564 204 DQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (280)
Q Consensus 204 ~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lt 238 (280)
+-+..|+.+++.|..+-..|.+.+..+.++|..|.
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44778888888888888888888888888887664
No 200
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=43.04 E-value=60 Score=24.72 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023564 202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEENE 241 (280)
Q Consensus 202 ~~~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lted~ 241 (280)
+-.++..|+.||..|.-+-..+.-.|..++++-+++..|-
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777776677777777777766665543
No 201
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=42.84 E-value=1e+02 Score=24.42 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=0.0
Q ss_pred eeHHHHHHHhcccceehhhhhhhhhhccccc--cccCCceEEe-----------------cCCCCCCchhHHHHHH----
Q 023564 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIE--KTSKNHIRWK-----------------GSDSLGTSKLDDQVAR---- 208 (280)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe--K~~KN~i~W~-----------------G~~~s~~~~~~~~~~~---- 208 (280)
+.+.++|+.+||+.+.|--. |-.||+. +...|.+++- |+. -.++..-+..
T Consensus 1 ~~I~e~A~~~gvs~~tLR~y----e~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~s---l~eI~~~l~~~~~~ 73 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFY----EEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFN---LEESGELVNLFNDP 73 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHH----HHTTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHCcCHHHHHHH----HHCCCCCCCccCCCCCeeeCHHHHHHHHHHHHHHHCCCC---HHHHHHHHHhhhcC
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023564 209 ---LKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (280)
Q Consensus 209 ---Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lte 239 (280)
..+-.+-|..+...|++.|..+++.+..|..
T Consensus 74 ~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (135)
T 1q06_A 74 QRHSADVKRRTLEKVAEIERHIEELQSMRDQLLA 107 (135)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 202
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=42.61 E-value=14 Score=28.37 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=35.7
Q ss_pred HHHHHHhCCCCceeHHHHHHHhccc----ceehhhhhhhhhhcccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQ----KRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~Vq----KRRIYDItNVLEgIGLIeK~~ 185 (280)
++.++.. .+.+...++++.|+.. +=-+|-+++-||.-|+|++..
T Consensus 40 VL~~L~~--~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 40 VMRVIWS--LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp HHHHHHH--HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHh--CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 4555554 3468999999999864 568999999999999999874
No 203
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=42.36 E-value=55 Score=25.27 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023564 207 ARLKAEIESLHAEECRIDDSIREKQELIRTLEENE 241 (280)
Q Consensus 207 ~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lted~ 241 (280)
..|.+|+..|..++..||..|..+......|...+
T Consensus 21 ~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE 55 (96)
T 3q8t_A 21 ERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEE 55 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHH
Confidence 35667788899999999999999999988886543
No 204
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=42.21 E-value=1e+02 Score=25.71 Aligned_cols=96 Identities=21% Similarity=0.246 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHH-hCCCCc---------------eeHHHHHHHhcc-cceehhhhhhhhhhccccccccCCceEEecCC
Q 023564 133 LGLLTRKFINLIQ-EAKDGT---------------LDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSKNHIRWKGSD 195 (280)
Q Consensus 133 LglLTkkFI~ll~-~a~~g~---------------ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~ 195 (280)
...|.+.|..+.. -.||.. .-|++|=+.|.= .+|+.||.. |.|+.+-.-. .
T Consensus 20 ~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~--l~g~~~~~e~----------~ 87 (174)
T 3hho_A 20 GSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS--LQGIEMNAEQ----------Q 87 (174)
T ss_dssp HHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH--HTTCCCC--------------
T ss_pred HHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH--ccCCCccccc----------C
Confidence 6778888888775 344431 246677777765 899999974 4566554322 0
Q ss_pred CCCCchhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 023564 196 SLGTSKLDDQVARLKAEIES----------LHAEECRIDDSIREKQELIRTLEEN 240 (280)
Q Consensus 196 ~s~~~~~~~~~~~Lk~El~~----------L~~eE~~LD~~I~~~~~~L~~Lted 240 (280)
.....+.--.+-++.+++++ |..-..++++.|+.+.++|....++
T Consensus 88 ~~~d~~fLme~me~rE~le~~~~~~d~~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 142 (174)
T 3hho_A 88 TLQDPMFLMEQMELREELESVTACADPEAALVAFDTKVTAMQRHYLAQLQGQLAQ 142 (174)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11112222233344555543 5555667777888888888877765
No 205
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=41.95 E-value=1.1e+02 Score=23.22 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=29.5
Q ss_pred HHHHHhCCCCceeHHHHHHHhc--------ccc-eehhhhhhhhhhccccccc
Q 023564 141 INLIQEAKDGTLDLNRTAEVLE--------VQK-RRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 141 I~ll~~a~~g~ldLn~aA~~L~--------VqK-RRIYDItNVLEgIGLIeK~ 184 (280)
+.++...| ..-.++++.|. +.. --||-+++-||.-|+|++.
T Consensus 19 L~~L~~~~---~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~ 68 (118)
T 2esh_A 19 LLLVAEKP---SHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTE 68 (118)
T ss_dssp HHHHHHSC---BCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEE
T ss_pred HHHHHcCC---CCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEE
Confidence 34444444 44445555552 788 9999999999999999876
No 206
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=41.08 E-value=72 Score=24.14 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=24.2
Q ss_pred eeHHHHHHHhcccceehhhhhhhhhhcccccc--ccCCceEE
Q 023564 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK--TSKNHIRW 191 (280)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK--~~KN~i~W 191 (280)
+.+.++|+.+||+.+.|--. |-.|++.- ...|.+++
T Consensus 3 ~~i~e~A~~~gvs~~tLR~y----e~~Gll~p~~~~~~g~R~ 40 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHY----DNIELLNPSALTDAGYRL 40 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHH----HHTTSSCCSEECTTCCEE
T ss_pred ccHHHHHHHHCcCHHHHHHH----HHCCCCCCCeECCCCCee
Confidence 57889999999998877433 45677753 23455554
No 207
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=40.98 E-value=46 Score=26.84 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023564 202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (280)
Q Consensus 202 ~~~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lt 238 (280)
+..++..|.++++.|....+.|+..|..+++.+....
T Consensus 86 L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~ 122 (142)
T 3gp4_A 86 LKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQ 122 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888888888888888877665443
No 208
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=40.48 E-value=63 Score=24.44 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023564 206 VARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (280)
Q Consensus 206 ~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lte 239 (280)
+..|...++.+...-..|+..+..++..+.++..
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777888888888888888888777654
No 209
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=40.46 E-value=15 Score=31.21 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=37.9
Q ss_pred HHHHHHHHh---CCCCce-eHHHHHHHhcccceehhhhhhhhhhcccccc
Q 023564 138 RKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (280)
Q Consensus 138 kkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 183 (280)
....+.+.. .|+..+ .-.++|+.|||+|--+=+.+..||.-|||+.
T Consensus 11 ~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 11 DWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp HHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred HHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 444444432 377788 5889999999999999999999999999997
No 210
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=39.84 E-value=9.1 Score=30.04 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=37.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 126 GCRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 126 ~~R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
..|.+..-..|....++++.+.+-.-+.+.++|++.||.|.-||-
T Consensus 14 ~~r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 58 (216)
T 3qqa_A 14 SQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSYSNIYD 58 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSCCSSSC
T ss_pred CcccHHHHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCCHHHHHH
Confidence 445555566788889999988888889999999999999998883
No 211
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=39.82 E-value=16 Score=32.23 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=35.2
Q ss_pred ceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceE
Q 023564 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (280)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (280)
.+++.++|+++++..|.++-+..+|.++|++++.. +.|.
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~-~~y~ 94 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALGLLTKEG-DAFR 94 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecC-Ceee
Confidence 89999999999999999999999999999999875 4443
No 212
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=39.69 E-value=35 Score=27.15 Aligned_cols=48 Identities=8% Similarity=0.170 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
...-+.+-++-..+++ .+.++|+.+++..+-+..|+.-|.--|||+-.
T Consensus 9 ~yAl~~L~~La~~~~~--s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~ 56 (145)
T 1xd7_A 9 AVAIHILSLISMDEKT--SSEIIADSVNTNPVVVRRMISLLKKADILTSR 56 (145)
T ss_dssp HHHHHHHHHHHTCSCC--CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHHhCCCC--CHHHHHHHHCcCHHHHHHHHHHHHHCCceEee
Confidence 3344445555545553 99999999999999999999999999999754
No 213
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=39.64 E-value=59 Score=24.30 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 023564 216 LHAEECRIDDSIREKQELIRTL 237 (280)
Q Consensus 216 L~~eE~~LD~~I~~~~~~L~~L 237 (280)
+...-..|+..+..++..+.++
T Consensus 77 i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 77 LQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443
No 214
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=39.24 E-value=30 Score=26.78 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCce
Q 023564 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHI 189 (280)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i 189 (280)
+..+...+.+++.. .+.+++.++-+.||++|+..-=|..-|..+|+..|.+-.++
T Consensus 64 ~~~~~~~l~~~~~~--~~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~gd~R~ 118 (121)
T 2pjp_A 64 IVEFANMIRDLDQE--CGSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDHL 118 (121)
T ss_dssp HHHHHHHHHHHHHH--HSSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEETTEEE
T ss_pred HHHHHHHHHHHHHH--CCCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEeeCCEee
Confidence 44455556666654 38899999999999999999999999999999988764443
No 215
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=38.86 E-value=45 Score=30.13 Aligned_cols=42 Identities=14% Similarity=0.304 Sum_probs=37.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023564 199 TSKLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEEN 240 (280)
Q Consensus 199 ~~~~~~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lted 240 (280)
..++++.+..|.+.++.+.+.|+.....|+...++|++|-+.
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~ 49 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678899999999999999999999999999999999764
No 216
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=38.86 E-value=26 Score=30.82 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=38.6
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
++..+...+++.+...++|+.|++.+-.+--+++=||.-|+|+|.
T Consensus 39 vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~ 83 (250)
T 1p4x_A 39 LLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKV 83 (250)
T ss_dssp HHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEE
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEec
Confidence 444445554567999999999999999999999999999999987
No 217
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=38.70 E-value=20 Score=33.21 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=32.8
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhccccccccC
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (280)
..+.+..+++.++|+++-+.-.++-|+..|+|++.++
T Consensus 310 p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~ 346 (373)
T 2qc0_A 310 PYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQS 346 (373)
T ss_dssp SEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--
T ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEecC
Confidence 4678999999999999999999999999999998754
No 218
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=38.00 E-value=72 Score=20.41 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023564 206 VARLKAEIESLHAEECRIDDSIREKQE 232 (280)
Q Consensus 206 ~~~Lk~El~~L~~eE~~LD~~I~~~~~ 232 (280)
+..|++|+..|..+-..|.-.|..+.|
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777777777776666666655443
No 219
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=38.00 E-value=17 Score=28.20 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=35.6
Q ss_pred CCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 147 AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 147 a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
++++.+.+.++|+.+++.+=++-=.+..||.-|||++.
T Consensus 32 ~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~ 69 (96)
T 2obp_A 32 NGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVS 69 (96)
T ss_dssp TTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEee
Confidence 47888999999999999999999999999999999975
No 220
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=37.73 E-value=16 Score=31.23 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhh
Q 023564 136 LTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLE 176 (280)
Q Consensus 136 LTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLE 176 (280)
+..++++++.+..+..++|.++|+.+++++|.+.-++.-.-
T Consensus 4 ~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~~~ 44 (292)
T 1d5y_A 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVT 44 (292)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 56788999999999999999999999999998888755433
No 221
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=37.65 E-value=27 Score=28.89 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=34.5
Q ss_pred ceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEE
Q 023564 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (280)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (280)
.+...++|+.||+++..+.-+++-|+.-|+|++.. +.|.-
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~-~~i~i 216 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKK-NKIIV 216 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS-SEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCC-CEEEE
Confidence 45889999999999999999999999999999874 44443
No 222
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=37.23 E-value=32 Score=26.70 Aligned_cols=29 Identities=10% Similarity=0.379 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023564 207 ARLKAEIESLHAEECRIDDSIREKQELIR 235 (280)
Q Consensus 207 ~~Lk~El~~L~~eE~~LD~~I~~~~~~L~ 235 (280)
..|+++++.|+.+...|+..|..+..+|.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778888888888888888877766554
No 223
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.06 E-value=34 Score=32.41 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023564 207 ARLKAEIESLHAEECRIDDSIREKQELIRTL 237 (280)
Q Consensus 207 ~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~L 237 (280)
..|++|++.|+++-.+|++.|+.++.+++++
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 36 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKEL 36 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544444444
No 224
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.99 E-value=80 Score=23.76 Aligned_cols=12 Identities=25% Similarity=0.194 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 023564 222 RIDDSIREKQEL 233 (280)
Q Consensus 222 ~LD~~I~~~~~~ 233 (280)
+.|..|+.++.+
T Consensus 51 ekd~eI~~Lqse 62 (72)
T 3nmd_A 51 QKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 225
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=36.38 E-value=61 Score=24.23 Aligned_cols=41 Identities=24% Similarity=0.277 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhh
Q 023564 131 SSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITN 173 (280)
Q Consensus 131 ~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItN 173 (280)
..+..+-+.+|...-..-++ ++.+||+.|||.|+.||.-+.
T Consensus 36 ~~l~~~Er~~I~~aL~~~~G--N~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 36 MSADRVRWEHIQRIYEMCDR--NVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp SCHHHHHHHHHHHHHHHTTS--CHHHHHHHHTSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCC--CHHHHHHHhCCCHHHHHHHHH
Confidence 35677777776554333333 467999999999999997654
No 226
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=36.21 E-value=16 Score=32.96 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=32.0
Q ss_pred ceeHHHHHHHhcc------cceehhhhhhhhhhccccccc
Q 023564 151 TLDLNRTAEVLEV------QKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 151 ~ldLn~aA~~L~V------qKRRIYDItNVLEgIGLIeK~ 184 (280)
.+.+.++|+++++ ..++++.++.+|.++|++++.
T Consensus 62 ~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 62 FMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp CBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 3999999999999 789999999999999999986
No 227
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=35.93 E-value=25 Score=29.89 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=36.7
Q ss_pred CCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccC
Q 023564 147 AKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (280)
Q Consensus 147 a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (280)
..++.+...++|+.|+|.+-.+-.+++-||.-|||++...
T Consensus 16 ~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 55 (214)
T 3hrs_A 16 TRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK 55 (214)
T ss_dssp SSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred hcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC
Confidence 3577899999999999999999999999999999999854
No 228
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.92 E-value=31 Score=27.52 Aligned_cols=46 Identities=11% Similarity=0.241 Sum_probs=38.9
Q ss_pred HHHHHHhCCCCceeHHHHHHHh-----cccceehhhhhhhhhhccccccccC
Q 023564 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTSK 186 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~~K 186 (280)
.++++..+ ++.+...++.+.| ++.+=-+|-.++.|+..|||.+..-
T Consensus 27 Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 77 (145)
T 2fe3_A 27 ILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTY 77 (145)
T ss_dssp HHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEee
Confidence 56666654 5679999999999 7889999999999999999998753
No 229
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=35.88 E-value=17 Score=32.42 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=36.4
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcc---cceehhhhhhhhhhccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEV---QKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~V---qKRRIYDItNVLEgIGLIeK~ 184 (280)
..+.+... ++.+.+.++|+++++ ..++++-++.+|.++|++++.
T Consensus 35 if~~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 35 IADAIHNH-GKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp HHHHHHHH-TSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred hHhHHhhc-CCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 34445432 357999999999999 588999999999999999987
No 230
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.73 E-value=87 Score=22.27 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023564 202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIRT 236 (280)
Q Consensus 202 ~~~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~ 236 (280)
+...+..|+.+...|..+-..|...+.++.+-|.+
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445556666666666666666666555555443
No 231
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=35.59 E-value=10 Score=31.92 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=33.6
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+.+...++|+.|++.+=.+.-+++.||.-|+|++..
T Consensus 61 ~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 61 NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 458999999999999999999999999999999874
No 232
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=35.37 E-value=14 Score=22.42 Aligned_cols=27 Identities=7% Similarity=0.004 Sum_probs=22.7
Q ss_pred eeHHHHHHHhcccceehhhhhhhhhhc
Q 023564 152 LDLNRTAEVLEVQKRRIYDITNVLEGI 178 (280)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgI 178 (280)
+...++|+.|+|.+.-||.++.-.+.-
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~~~~ 48 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDPVSY 48 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCSTTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhHHhc
Confidence 579999999999999999988765543
No 233
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=35.36 E-value=17 Score=22.55 Aligned_cols=22 Identities=9% Similarity=0.102 Sum_probs=20.0
Q ss_pred eeHHHHHHHhcccceehhhhhh
Q 023564 152 LDLNRTAEVLEVQKRRIYDITN 173 (280)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItN 173 (280)
+.+.++|+.|||.+.-||.+++
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 7899999999999999998765
No 234
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=35.22 E-value=2e+02 Score=24.17 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=64.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHh-CCCCc-------eeHHHHHHHhcc-cceehhhhhhhhhhccccccccCCceEEecCCC
Q 023564 126 GCRYDSSLGLLTRKFINLIQE-AKDGT-------LDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDS 196 (280)
Q Consensus 126 ~~R~d~SLglLTkkFI~ll~~-a~~g~-------ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~~ 196 (280)
..+++.+...|.+.|..+... .||.. ..|++|=+.|.= .+|+.||..= +.|+.+-.-.... +...
T Consensus 25 ~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l-~~g~~~~~e~~~~-----~~~~ 98 (181)
T 3uo3_A 25 LPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL-LRNIDLTQEQTSN-----EVTT 98 (181)
T ss_dssp SCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH-HHCCCTTSHHHHH-----HHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH-HhCCCcccccccc-----cccc
Confidence 334788899999999999864 46542 468998888876 8999999731 1455443211000 0000
Q ss_pred CCCchhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhh
Q 023564 197 LGTSKLDDQVARLKAEIES------LHAEECRIDDSIREKQELIRTLEEN 240 (280)
Q Consensus 197 s~~~~~~~~~~~Lk~El~~------L~~eE~~LD~~I~~~~~~L~~Lted 240 (280)
. ..+.--++-++++++++ |..-..++++.|..|.++|....+.
T Consensus 99 ~-d~~fLme~me~rE~leea~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 147 (181)
T 3uo3_A 99 S-DPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYND 147 (181)
T ss_dssp T-CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred C-CHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 11222233445555543 4555566777777777777776654
No 235
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=35.21 E-value=32 Score=27.03 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=36.3
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhh
Q 023564 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDI 171 (280)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDI 171 (280)
.+..=..|....++++.+..-.-+.+.++|+..||.|.-||--
T Consensus 28 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~~ 70 (222)
T 3bru_A 28 ASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHY 70 (222)
T ss_dssp GGGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhhh
Confidence 4444567888899999988888899999999999999999853
No 236
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=35.17 E-value=74 Score=24.63 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=22.1
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023564 205 QVARLK----AEIESLHAEECRIDDSIREKQELIRTLEEN 240 (280)
Q Consensus 205 ~~~~Lk----~El~~L~~eE~~LD~~I~~~~~~L~~Lted 240 (280)
++..|+ .||+.-..+-..|.+.|...+..|++|..+
T Consensus 41 qL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~~ 80 (84)
T 1gmj_A 41 QLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQS 80 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344555 344445555566666777777888877654
No 237
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=35.00 E-value=28 Score=29.82 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHH-HhCCCCceeHHHHHHHhcccceehhhhhhh-hhhccccccccC
Q 023564 133 LGLLTRKFINLI-QEAKDGTLDLNRTAEVLEVQKRRIYDITNV-LEGIGLIEKTSK 186 (280)
Q Consensus 133 LglLTkkFI~ll-~~a~~g~ldLn~aA~~L~VqKRRIYDItNV-LEgIGLIeK~~K 186 (280)
|...-+.++..+ ....+..+.+..+|+.||+.+..+|..+.- +...|+|++...
T Consensus 245 l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~ 300 (324)
T 1hqc_A 245 LEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPR 300 (324)
T ss_dssp CCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETT
T ss_pred CCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCc
Confidence 334444555444 455666789999999999999999995544 677889986643
No 238
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=34.97 E-value=10 Score=30.78 Aligned_cols=42 Identities=17% Similarity=0.067 Sum_probs=34.2
Q ss_pred CCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhh
Q 023564 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDI 171 (280)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDI 171 (280)
+..-..|....++++.+..-.-+.+.++|+..||.|.-||--
T Consensus 39 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~ 80 (225)
T 2id3_A 39 ARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRR 80 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHH
Confidence 334455777788899887777899999999999999999954
No 239
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.51 E-value=24 Score=28.51 Aligned_cols=46 Identities=13% Similarity=0.365 Sum_probs=38.4
Q ss_pred HHHHHHhCCCCceeHHHHHHHh-----cccceehhhhhhhhhhcccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.++++..++++.+...++.+.| .+.+=-+|-.++.|+..|||.+..
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 5666655443689999999999 688889999999999999999874
No 240
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=34.47 E-value=41 Score=29.01 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHh---CCCCce-eHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 135 LLTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 135 lLTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+...+.+.+.. .++..+ ...++|+.++|+|--+-..++.|+.-|+|.+..
T Consensus 14 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 68 (243)
T 2wv0_A 14 QIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLK 68 (243)
T ss_dssp HHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeC
Confidence 344555666654 366777 899999999999999999999999999999763
No 241
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=34.43 E-value=34 Score=25.58 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhcc----cceehhhhhhhhhhcccccccc
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLEV----QKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~V----qKRRIYDItNVLEgIGLIeK~~ 185 (280)
-.++.++... +.+...++|+.|++ .+--++-+++-||.-|+|++..
T Consensus 13 ~~vL~~L~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 13 WDVMNIIWDK--KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHS--SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 3456666553 46899999999985 6889999999999999999875
No 242
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=34.36 E-value=28 Score=31.44 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=37.4
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
..+.|.+. ++.+++.++|+++++..+.++-+..+|.++|++++..
T Consensus 33 lfd~L~~~-~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~ 77 (353)
T 4a6d_A 33 VFDLLAEA-PGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVET 77 (353)
T ss_dssp HHHHHHHS-SSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhcC-CCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEec
Confidence 34444443 4679999999999999999999999999999998654
No 243
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=34.05 E-value=33 Score=28.78 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=40.4
Q ss_pred HHHHHHhCCCCceeHHHHHHHhc-ccceehhhhhhhhhhcccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLE-VQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~-VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.++...+.+...+.++++.++ +.+=-||--+++|+..|||++..
T Consensus 34 IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~ 80 (151)
T 3u1d_A 34 VLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIP 80 (151)
T ss_dssp HHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEee
Confidence 45555667888899999999999 99999999999999999999774
No 244
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=34.03 E-value=35 Score=29.34 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHh---CCCCce-eHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 135 LLTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 135 lLTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+...+.+.+.. .++..+ ...++|+.++|+|=-+-..++.|+.-|+|++..
T Consensus 13 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 67 (236)
T 3edp_A 13 VIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKN 67 (236)
T ss_dssp HHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 456667777764 466677 899999999999999999999999999999864
No 245
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=34.01 E-value=33 Score=26.31 Aligned_cols=42 Identities=19% Similarity=0.119 Sum_probs=34.6
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
.+..=..|....++++.+.+-.-+.+.++|+..||.|.-||-
T Consensus 9 ~~~~r~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~ 50 (196)
T 3he0_A 9 AVDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYR 50 (196)
T ss_dssp --CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHHH
Confidence 344446788889999988877789999999999999999993
No 246
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=33.74 E-value=27 Score=31.62 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=38.3
Q ss_pred HHHHHHhCCCCceeHHHHHHHhcc--cce---ehhhhhhhhhhccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVLEV--QKR---RIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L~V--qKR---RIYDItNVLEgIGLIeK~ 184 (280)
..+.+..++++.+.+.++|+++++ ..| .++-|..+|-++|+++..
T Consensus 45 ifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~ 94 (364)
T 3p9c_A 45 LLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCL 94 (364)
T ss_dssp HHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEe
Confidence 555665655578999999999998 777 899999999999999986
No 247
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=33.72 E-value=57 Score=23.42 Aligned_cols=30 Identities=13% Similarity=0.458 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023564 205 QVARLKAEIESLHAEECRIDDSIREKQELI 234 (280)
Q Consensus 205 ~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L 234 (280)
.+..|+.+++.|..+-..|...|..+++++
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888877777777777766654
No 248
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=33.64 E-value=19 Score=26.29 Aligned_cols=26 Identities=8% Similarity=0.296 Sum_probs=23.2
Q ss_pred CCCceeHHHHHHHhcccceehhhhhh
Q 023564 148 KDGTLDLNRTAEVLEVQKRRIYDITN 173 (280)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItN 173 (280)
....+.+.+||+-|++.+..+|.+++
T Consensus 13 ~K~~LTi~EaAeylgIg~~~l~~L~~ 38 (70)
T 1y6u_A 13 ERYTLTIEEASKYFRIGENKLRRLAE 38 (70)
T ss_dssp TSSEEEHHHHHHHTCSCHHHHHHHHH
T ss_pred ccceeCHHHHHHHHCcCHHHHHHHHH
Confidence 35679999999999999999999874
No 249
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=33.51 E-value=35 Score=28.35 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhc--------------ccceehhhhhhhhhhccccccccC
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLE--------------VQKRRIYDITNVLEGIGLIEKTSK 186 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~--------------VqKRRIYDItNVLEgIGLIeK~~K 186 (280)
..+.+.+...+.|. .++|+.+| |++=-|-.++..||..|||++..+
T Consensus 57 ~~lr~~i~~g~~G~---~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~ 116 (150)
T 2v7f_A 57 SILRRVYLDGPVGI---ERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPG 116 (150)
T ss_dssp HHHHHHHHHCSBCH---HHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHhCCCCH---HHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCC
Confidence 34444454445554 99999999 888889999999999999998743
No 250
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=33.35 E-value=18 Score=28.99 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=33.7
Q ss_pred ceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceE
Q 023564 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (280)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (280)
.+...++|+.||+++..+.-+.+-|+.-|+|+.. ++.|.
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~ 207 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLS-RGKIT 207 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC-CCEEE
Confidence 5678999999999999999999999999999875 44443
No 251
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=33.27 E-value=40 Score=26.31 Aligned_cols=37 Identities=11% Similarity=0.404 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
..|...+++++.+.+-..+.+.++|++.||.|.-||-
T Consensus 16 ~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~ 52 (195)
T 2iu5_A 16 KIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYN 52 (195)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGG
T ss_pred HHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHHH
Confidence 5677889999988777789999999999999999994
No 252
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=33.09 E-value=42 Score=27.11 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=32.8
Q ss_pred eeHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
+...++|+.||+.+..+.-+++-|+.-|+|+...+.
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~ 199 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCc
Confidence 688999999999999999999999999999987443
No 253
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=33.04 E-value=35 Score=22.65 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=28.9
Q ss_pred HHHHhCCCCceeHHHHHHHh-----cccceehhhhhhhhhhccccccc
Q 023564 142 NLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 142 ~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
.++.. ++.+...++++.| +|..+-||-.++ .+|+| |.
T Consensus 12 ~ll~~--~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v-~~ 53 (64)
T 2p5k_A 12 EIITS--NEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV-KV 53 (64)
T ss_dssp HHHHH--SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE-EE
T ss_pred HHHHc--CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE-EE
Confidence 44443 4679999999999 999999997777 55777 54
No 254
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=32.25 E-value=32 Score=29.08 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=35.2
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 127 CRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 127 ~R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
.|...+-..|..--++++.+..-.-+.+.++|+++||.+--||-
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 68 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYR 68 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHHH
Confidence 34455557788889999987776789999999999999999993
No 255
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=32.12 E-value=39 Score=26.86 Aligned_cols=34 Identities=9% Similarity=0.192 Sum_probs=31.6
Q ss_pred ceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
.+...++|..||+++..+.-+.+-|+.-|+|+..
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 196 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHALAEEGVVRLG 196 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 4678999999999999999999999999999875
No 256
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=31.87 E-value=42 Score=25.99 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhh
Q 023564 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDI 171 (280)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDI 171 (280)
..|..-.++++.+..-.-+.+.++|+..||.|.-||--
T Consensus 10 ~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 47 (195)
T 2dg7_A 10 QRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRY 47 (195)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHH
Confidence 46777888999888777899999999999999999853
No 257
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=31.77 E-value=33 Score=27.46 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=33.2
Q ss_pred eeHHHHHHHhcccceehhhhhhhhhhccccccccCCceE
Q 023564 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (280)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (280)
+...++|..||+++..+.-+.+-|+.-|+|+.. ++.|.
T Consensus 179 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~ 216 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLD-GREIS 216 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEES-SSCEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEec-CCEEE
Confidence 567899999999999999999999999999886 44443
No 258
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=31.66 E-value=98 Score=24.22 Aligned_cols=33 Identities=12% Similarity=0.327 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023564 207 ARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (280)
Q Consensus 207 ~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lte 239 (280)
.-|+..++.|...-..|.+.+..+++++..+.+
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777777777777777777777776643
No 259
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=31.25 E-value=28 Score=21.59 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 023564 214 ESLHAEECRIDDSIREKQELIRTL 237 (280)
Q Consensus 214 ~~L~~eE~~LD~~I~~~~~~L~~L 237 (280)
..|+-+.+.|++.|..+.+.+..|
T Consensus 3 dalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHh
Confidence 345555566666666666666554
No 260
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.17 E-value=38 Score=26.90 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=38.1
Q ss_pred HHHHHHhCCCCceeHHHHHHHh-----cccceehhhhhhhhhhcccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.++++.+++ +.++..++.+.| .+.+=-+|-.++.|+..|+|.+..
T Consensus 19 Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 19 VSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 566676554 589999999998 588899999999999999999875
No 261
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=31.13 E-value=45 Score=25.81 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=35.5
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
.+..-..|....++++.+.+-.-+.+.++|+..||.|.-||-
T Consensus 14 ~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~ 55 (213)
T 2qtq_A 14 TPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKY 55 (213)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhH
Confidence 344456788889999988877789999999999999999984
No 262
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=30.84 E-value=99 Score=23.39 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023564 206 VARLKAEIESLHAEECRIDDSIREKQELIR 235 (280)
Q Consensus 206 ~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~ 235 (280)
+..++.++..|..+...|+..|..+..++.
T Consensus 73 l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 73 LNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555544
No 263
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=30.46 E-value=45 Score=25.27 Aligned_cols=40 Identities=8% Similarity=0.019 Sum_probs=34.4
Q ss_pred CcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 131 SSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 131 ~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
..-..|....++++.+.+-..+.+.++|++.||.|.-||-
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~ 48 (195)
T 3ppb_A 9 TKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLFH 48 (195)
T ss_dssp CHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHH
Confidence 3345688889999988877889999999999999999994
No 264
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=30.05 E-value=42 Score=26.20 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
..|....++++.+.+-.-+.+.++|++.||.|.-||-
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (185)
T 2yve_A 7 EMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIY 43 (185)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHH
Confidence 4577788999988888889999999999999999995
No 265
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=30.03 E-value=10 Score=30.54 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhcccccc
Q 023564 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEK 183 (280)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK 183 (280)
.+-.+.+..++ +++.+...++|+.|||++--+...+..|+.-|+|+.
T Consensus 13 ~l~~~Il~~l~--~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 13 RIDRNILNELQ--KDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp SHHHHHHHHHH--HCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHHHHH--hCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 34455666554 566779999999999999999999999999999986
No 266
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.99 E-value=45 Score=26.81 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=38.0
Q ss_pred HHHHHHhCCCCceeHHHHHHHh-----cccceehhhhhhhhhhcccccccc
Q 023564 140 FINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 140 FI~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.++++..+ ++.+...++.+.| .+.+=-+|-.++.|+..|+|.+..
T Consensus 32 IL~~l~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 32 VVSVLYRS-GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHC-SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEE
Confidence 56666655 4578999999998 688999999999999999999875
No 267
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.86 E-value=1.1e+02 Score=23.13 Aligned_cols=40 Identities=13% Similarity=0.273 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023564 201 KLDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLEEN 240 (280)
Q Consensus 201 ~~~~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lted 240 (280)
++...+..++.++..|......+...|..+...+..+..+
T Consensus 7 ~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~ 46 (112)
T 1l8d_A 7 ELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA 46 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3455677888889999999999999999999999988654
No 268
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=29.78 E-value=44 Score=25.28 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehh
Q 023564 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (280)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (280)
..|....++++.+.+-..+.+.++|++.||.|.-||
T Consensus 11 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 46 (188)
T 3qkx_A 11 EQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIY 46 (188)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHH
Confidence 457777899998888788999999999999999999
No 269
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=29.63 E-value=46 Score=25.88 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=36.1
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 128 R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
|....=..|....++++.+.+-.-+.+.++|+..||.|.-||-
T Consensus 14 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 56 (207)
T 2rae_A 14 RPSTTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFR 56 (207)
T ss_dssp SCCCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHH
T ss_pred chHhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhh
Confidence 3445556788889999988877889999999999999999984
No 270
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=29.62 E-value=20 Score=26.59 Aligned_cols=37 Identities=8% Similarity=0.311 Sum_probs=32.7
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhccccccccCC
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKN 187 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN 187 (280)
+...+.++|+.||+.+=-++--+++|+.. +|.....+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~g 76 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQG 76 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEET
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEeC
Confidence 56899999999999999999999999999 99855433
No 271
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=29.54 E-value=19 Score=30.60 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=34.5
Q ss_pred CCCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
..+.+.+.++|+.|++.+=-+--.+.-||..||++|..
T Consensus 24 ~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~ 61 (230)
T 3cta_A 24 NRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTV 61 (230)
T ss_dssp SEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34567899999999999999999999999999999974
No 272
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=29.27 E-value=1e+02 Score=23.23 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023564 204 DQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (280)
Q Consensus 204 ~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lt 238 (280)
+-+..|+.+...|..+...|......+..+|..|.
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677777777777777777777777777777663
No 273
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=29.13 E-value=29 Score=28.21 Aligned_cols=41 Identities=10% Similarity=0.089 Sum_probs=34.2
Q ss_pred CcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhh
Q 023564 131 SSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDI 171 (280)
Q Consensus 131 ~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDI 171 (280)
..-..|....++++.+..-.-+.+.++|+..||.+.-||--
T Consensus 44 ~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~ 84 (236)
T 3q0w_A 44 DRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFY 84 (236)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHHHHH
Confidence 33456778889999887777899999999999999999853
No 274
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=29.07 E-value=34 Score=30.08 Aligned_cols=43 Identities=9% Similarity=0.234 Sum_probs=38.7
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEE
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (280)
++..+..++|+.+++..+-+-..++-|.-.|+|++...+.|.-
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~~~~~~ 218 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISEMARFVPVKIINDNTVVL 218 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETTTEEEE
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecCCeEEe
Confidence 5788999999999999999999999999999999886666653
No 275
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=28.99 E-value=53 Score=28.16 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=40.7
Q ss_pred HHHHHHHHHHh---CCCCce-eHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 136 LTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 136 LTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+...+.+.+.. .++..+ ...++|+.++|+|=-+-..++.|+.-|+|.+..
T Consensus 10 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~ 63 (239)
T 3bwg_A 10 IATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVR 63 (239)
T ss_dssp HHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeC
Confidence 44455555543 466777 899999999999999999999999999999764
No 276
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=28.90 E-value=50 Score=25.05 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=34.6
Q ss_pred CCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
+..=..|....++++.+.+-.-+.+.++|+..||.|.-||-
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 49 (191)
T 3on4_A 9 SNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHY 49 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhh
Confidence 34456688888999988777789999999999999999984
No 277
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=28.86 E-value=32 Score=30.58 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CcccccCh
Q 023564 206 VARLKAEIESLHAEECRIDDSIREKQELIRTLEENENH-QKYMFLTE 251 (280)
Q Consensus 206 ~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lted~~n-~~~~YVT~ 251 (280)
-++|++|+..|+.+..+++++..+.+ +|+.|.+-... ..|-|++-
T Consensus 28 N~~Lk~e~~~l~~~~~~~~~l~~En~-rLr~lL~~~~~~~~~~~i~A 73 (255)
T 2j5u_A 28 NQHLKERLEELAQLESEVADLKKENK-DLKESLDITDSIRDYDPLNA 73 (255)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCCSCTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCccccccCceEEE
Confidence 45788888888888888877766544 57776655443 44554443
No 278
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=28.51 E-value=1e+02 Score=22.89 Aligned_cols=30 Identities=7% Similarity=0.099 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023564 206 VARLKAEIESLHAEECRIDDSIREKQELIR 235 (280)
Q Consensus 206 ~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~ 235 (280)
|..|+.+...|..+-..|-..+..++++|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555555555554
No 279
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.47 E-value=1.4e+02 Score=22.62 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023564 206 VARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (280)
Q Consensus 206 ~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lte 239 (280)
.+.|++=+..|..++..|+.-|..+++...+|..
T Consensus 41 ~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 41 HQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777888888888888888888887764
No 280
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=28.35 E-value=47 Score=26.08 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehh
Q 023564 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIY 169 (280)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIY 169 (280)
..+...+++++.+.+-..+.+.++|+..||.|.-||
T Consensus 15 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 50 (189)
T 3vp5_A 15 NRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFY 50 (189)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHH
Confidence 457778999998888888999999999999999998
No 281
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=28.06 E-value=33 Score=26.00 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 132 SLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 132 SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
.-..|..-+++++.+.+-..+.+.++|+..||.|.-||-
T Consensus 13 tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~ 51 (177)
T 3kkc_A 13 TKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYS 51 (177)
T ss_dssp HHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHH
Confidence 334567778889887777789999999999999999984
No 282
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=27.95 E-value=1.1e+02 Score=25.95 Aligned_cols=38 Identities=26% Similarity=0.150 Sum_probs=33.1
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhccccccccC
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (280)
+......++|+.|+|.+-.+-.+++-||.-|+|++...
T Consensus 22 ~~~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (226)
T 2qq9_A 22 GVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASD 59 (226)
T ss_dssp TCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 33446699999999999999999999999999999753
No 283
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=27.90 E-value=29 Score=30.14 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=36.7
Q ss_pred CCCCce-eHHHHHHHhcccceehhhhhhhhhhccccccccCCce
Q 023564 147 AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHI 189 (280)
Q Consensus 147 a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i 189 (280)
.++..+ .-.++|+.++|+|=-+-..++.|+.-|+|.+.++..|
T Consensus 31 ~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~g~Gt~ 74 (248)
T 3f8m_A 31 RIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVERRGRTTV 74 (248)
T ss_dssp CTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCEEE
Confidence 455667 8999999999999999999999999999999555433
No 284
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=27.90 E-value=9.8 Score=29.55 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=34.2
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhh
Q 023564 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDI 171 (280)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDI 171 (280)
.+..=..|....++++.+.+-.-+.+.++|+..||.|.-||--
T Consensus 18 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 60 (203)
T 3mnl_A 18 QRERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGTLYRY 60 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCccCCHHHHHHHcCCChhHHHHH
Confidence 3334456777788888877666799999999999999999953
No 285
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.84 E-value=87 Score=23.13 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023564 206 VARLKAEIESLHAEECRIDDSIREKQELIRTL 237 (280)
Q Consensus 206 ~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~L 237 (280)
+..|..++..|+..-..|......+.+++..|
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444444444444444444444
No 286
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=27.83 E-value=77 Score=26.53 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=31.9
Q ss_pred ceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+...++|..||+.+..+.-+++-|+.-|+|+...
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~ 251 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHG 251 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEcC
Confidence 35679999999999999999999999999999864
No 287
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=27.76 E-value=37 Score=27.30 Aligned_cols=40 Identities=15% Similarity=0.328 Sum_probs=34.5
Q ss_pred ceeHHHHHHHhcccceehhhhhhhhhhccccccc-cCCceEE
Q 023564 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT-SKNHIRW 191 (280)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~-~KN~i~W 191 (280)
.+...++|+.||+.+..+.-+.+-|+.-|+|++. .+ .|.-
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~-~i~i 207 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQR-TLLL 207 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSS-EEEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEcCCC-EEEE
Confidence 4678999999999999999999999999999986 44 4443
No 288
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=27.69 E-value=36 Score=25.87 Aligned_cols=41 Identities=7% Similarity=0.109 Sum_probs=34.1
Q ss_pred CCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
+..-..|....++++.+.+-..+.+.++|+..||.|.-||-
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 49 (196)
T 3col_A 9 MNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYL 49 (196)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHH
Confidence 44446777888999988777789999999999999999984
No 289
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.67 E-value=74 Score=30.33 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023564 208 RLKAEIESLHAEECRIDDSIREKQELIRTL 237 (280)
Q Consensus 208 ~Lk~El~~L~~eE~~LD~~I~~~~~~L~~L 237 (280)
.|++|+..|.++..+|++.|+.++..+..+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETC 36 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544444443
No 290
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=27.65 E-value=44 Score=25.49 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=34.6
Q ss_pred CCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
...=..|..-.++++.+.+-..+.+.++|+..||.|.-||-
T Consensus 7 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (183)
T 1zk8_A 7 GLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYN 47 (183)
T ss_dssp CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHH
Confidence 34446788889999988777789999999999999999984
No 291
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=27.57 E-value=22 Score=28.11 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhh
Q 023564 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDI 171 (280)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDI 171 (280)
=..|....++++.+..-.-+.+.++|+..||.|.-||--
T Consensus 25 r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~ 63 (214)
T 2zb9_A 25 RAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKW 63 (214)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHH
Confidence 455777788899887777899999999999999999953
No 292
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=27.48 E-value=1.8e+02 Score=23.65 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhccccc-cccCCceEEecCC--------------CCCCchhHHHHHH-----
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIE-KTSKNHIRWKGSD--------------SLGTSKLDDQVAR----- 208 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe-K~~KN~i~W~G~~--------------~s~~~~~~~~~~~----- 208 (280)
...+.+.++|+.+||..+-|. -.|.+|||. ....|.|++-..+ ...-.++..-+..
T Consensus 9 ~~~~~i~e~A~~~gvs~~TLR----~ye~~Gll~p~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~~~~~~ 84 (154)
T 2zhg_A 9 KALLTPGEVAKRSGVAVSALH----FYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGH 84 (154)
T ss_dssp -CCBCHHHHHHHHTSCHHHHH----HHHHTTSSCCEECTTSCEEBCTTHHHHHHHHHHHHHHTCCHHHHHHHHCC-----
T ss_pred ccCCCHHHHHHHHCcCHHHHH----HHHHcCCCCcccCCCCCEEeCHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccccC
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023564 209 ---LKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (280)
Q Consensus 209 ---Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lte 239 (280)
...-.+-|..+...|++.|..++..+..|..
T Consensus 85 ~~~~~~~~~ll~~~~~~l~~qi~~L~~~~~~L~~ 118 (154)
T 2zhg_A 85 TLSAKEWKQLSSQWREELDRRIHTLVALRDELDG 118 (154)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 293
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=27.30 E-value=68 Score=28.27 Aligned_cols=52 Identities=21% Similarity=0.192 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHh---CCCCce-eHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 134 GLLTRKFINLIQE---AKDGTL-DLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 134 glLTkkFI~ll~~---a~~g~l-dLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
..+...+.+.+.. .++..+ ...++|+.++|+|=-+-..++.|+.-|+|++..
T Consensus 32 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 87 (272)
T 3eet_A 32 LRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRS 87 (272)
T ss_dssp HHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 3466666666654 356677 899999999999999999999999999998764
No 294
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=27.28 E-value=53 Score=24.90 Aligned_cols=39 Identities=15% Similarity=0.074 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhh
Q 023564 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDIT 172 (280)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDIt 172 (280)
..|....++++.+.+-..+.+.++|+..||.|.-||--.
T Consensus 9 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 47 (191)
T 1sgm_A 9 EKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFF 47 (191)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHST
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHHHHc
Confidence 457788899998888888999999999999999998433
No 295
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=26.89 E-value=57 Score=24.97 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhh
Q 023564 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDI 171 (280)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDI 171 (280)
=..|....++++.+.+-.-+.+.++|+..||.|.-||--
T Consensus 19 r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~ 57 (206)
T 3kz9_A 19 KQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNY 57 (206)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHHH
Confidence 345777888999888888899999999999999999853
No 296
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.83 E-value=1e+02 Score=29.32 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023564 212 EIESLHAEECRIDDSIREKQELIRTLEEN 240 (280)
Q Consensus 212 El~~L~~eE~~LD~~I~~~~~~L~~Lted 240 (280)
+.+.|+.+-.+++..++.++++++++.++
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 33444455556666666666666666554
No 297
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=26.67 E-value=1e+02 Score=27.14 Aligned_cols=34 Identities=26% Similarity=0.191 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023564 206 VARLKAEIESLHAEECRIDDSIREKQELIRTLEE 239 (280)
Q Consensus 206 ~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lte 239 (280)
++.|+.|+..|.++-+..++.|+.++++|..+.+
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~ 55 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNA 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666666666666666555543
No 298
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=26.54 E-value=45 Score=26.70 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=34.6
Q ss_pred CCCCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 127 CRYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 127 ~R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
.|.+..=..|..-.++++.+..-.-+.+.++|+..||.|.-||-
T Consensus 31 ~~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~AGvs~~tlY~ 74 (221)
T 3g7r_A 31 RTPSEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYR 74 (221)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHH
Confidence 33444456677888889988777789999999999999999984
No 299
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=26.44 E-value=77 Score=24.91 Aligned_cols=35 Identities=14% Similarity=0.274 Sum_probs=32.0
Q ss_pred ceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+...++|+.||+++..+.-+.+-|+.-|+|+...
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 201 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHG 201 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeCC
Confidence 35789999999999999999999999999999764
No 300
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=26.42 E-value=55 Score=27.76 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=31.7
Q ss_pred eeHHHHHHHhcccceehhhhhhhhhhccccccccC
Q 023564 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSK 186 (280)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~K 186 (280)
....++|+.|++.+-.+..+++-||.-|+|++...
T Consensus 25 ~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (230)
T 1fx7_A 25 PLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD 59 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 34599999999999999999999999999999853
No 301
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=26.32 E-value=64 Score=26.06 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023564 204 DQVARLKAEIESLHAEECRIDDSIREKQELIRT 236 (280)
Q Consensus 204 ~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~ 236 (280)
.++..|+++++.|......|+..|..+++.+..
T Consensus 102 ~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 102 QQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555555666666566666666555554433
No 302
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=26.30 E-value=33 Score=27.79 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=32.1
Q ss_pred ceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+...++|..||+.+..+.-+++-|+.-|+|+...
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 209 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSP 209 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecC
Confidence 35789999999999999999999999999998763
No 303
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=26.21 E-value=2.8e+02 Score=22.94 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=52.8
Q ss_pred CcHHHHHHHHHHHHHh-CCCCc---------------eeHHHHHHHhcc-cceehhhhhhhhhhccccccccCCceEEec
Q 023564 131 SSLGLLTRKFINLIQE-AKDGT---------------LDLNRTAEVLEV-QKRRIYDITNVLEGIGLIEKTSKNHIRWKG 193 (280)
Q Consensus 131 ~SLglLTkkFI~ll~~-a~~g~---------------ldLn~aA~~L~V-qKRRIYDItNVLEgIGLIeK~~KN~i~W~G 193 (280)
-+...|-+.|..+... .||.. .-|++|=+.|.- .+|+.||.. |.|+.+-.-. +
T Consensus 15 i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~--l~g~~~~~e~--~------ 84 (171)
T 1fpo_A 15 LDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS--LHGFDLASEQ--H------ 84 (171)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH--TTTCCTTCSS--S------
T ss_pred CCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH--hcCCCccccc--c------
Confidence 3677788888887752 34321 246777777774 788899984 5566553211 0
Q ss_pred CCCCCCchhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhh
Q 023564 194 SDSLGTSKLDDQVARLKAEIES---------LHAEECRIDDSIREKQELIRTLEE 239 (280)
Q Consensus 194 ~~~s~~~~~~~~~~~Lk~El~~---------L~~eE~~LD~~I~~~~~~L~~Lte 239 (280)
... +.+.--.+-+++++|+. |..-..++++.|+.|.++|....+
T Consensus 85 -~~~-d~~fLme~me~rE~lee~~~~~d~~~l~~l~~~~~~~~~~~~~~l~~~~~ 137 (171)
T 1fpo_A 85 -TVR-DTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLD 137 (171)
T ss_dssp -CCS-CHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccC-CHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011 11222222334444443 444455666666666666666554
No 304
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=26.03 E-value=29 Score=28.56 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=31.7
Q ss_pred ceeHHHHHHHhcccce-ehhhhhhhhhhcccccccc
Q 023564 151 TLDLNRTAEVLEVQKR-RIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 151 ~ldLn~aA~~L~VqKR-RIYDItNVLEgIGLIeK~~ 185 (280)
.+...++|+.||+.+| .+.-+++-|+.-|+|++..
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~ 204 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKN 204 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEET
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecC
Confidence 4567899999999998 9999999999999999874
No 305
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=25.84 E-value=83 Score=26.30 Aligned_cols=42 Identities=19% Similarity=0.142 Sum_probs=35.6
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
...+-..|....++++....-.-+.+.++|+.+||.+--||-
T Consensus 14 ~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 55 (237)
T 2hxo_A 14 EPLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYW 55 (237)
T ss_dssp --CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGG
T ss_pred CccCHHHHHHHHHHHHHhcCcccCCHHHHHHHHCCChHHHHH
Confidence 344557788999999998888899999999999999999995
No 306
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.80 E-value=1.4e+02 Score=22.35 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023564 206 VARLKAEIESLHAEECRIDDSIREKQELIR 235 (280)
Q Consensus 206 ~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~ 235 (280)
+..||..++.-..+-+..|+.|+.+..+|.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ 50 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELD 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444554443333333444444444444433
No 307
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.57 E-value=1.6e+02 Score=22.63 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023564 207 ARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (280)
Q Consensus 207 ~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lt 238 (280)
..++.+++.|+.+-..|...|..+..++..|.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788888888888887777776654
No 308
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=25.56 E-value=65 Score=24.46 Aligned_cols=38 Identities=13% Similarity=0.049 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
=..|..-.++++.+.+-.-+.+.++|+..||.|.-||-
T Consensus 14 r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~ 51 (199)
T 3on2_A 14 RRVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAPSK 51 (199)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----CCC
T ss_pred HHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHHHH
Confidence 35677888889887777789999999999999999884
No 309
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=25.48 E-value=50 Score=27.07 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=29.3
Q ss_pred CceeHHHHHHHhcccceehhhhhhhhhhccccc
Q 023564 150 GTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIE 182 (280)
Q Consensus 150 g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe 182 (280)
+.-.+..+.+.-|..||-+.|.+..|..+|+.-
T Consensus 32 ~~~nvp~L~~~TGmPRRTiQd~I~aL~elgI~~ 64 (117)
T 3ke2_A 32 ARHNLLSLGKLTGMPRRTLQDAIASFADIGIEV 64 (117)
T ss_dssp SCCCHHHHHHHHCCCHHHHHHHHHTGGGGTCEE
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHhhhCCeEE
Confidence 444999999999999999999999999999753
No 310
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=25.48 E-value=43 Score=27.05 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
.|....++++.+.+-..+.+.++|+..||.|.-||-
T Consensus 34 ~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~ 69 (230)
T 2iai_A 34 TLLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIYH 69 (230)
T ss_dssp CHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHHCCChhHHHH
Confidence 367778888888777789999999999999999984
No 311
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=25.27 E-value=31 Score=27.23 Aligned_cols=38 Identities=11% Similarity=0.238 Sum_probs=33.2
Q ss_pred eeHHHHHHHhcccceehhhhhhhhhhccccccccCCceE
Q 023564 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (280)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (280)
+...++|..||+.+..+.-+.+-|+.-|+|++.. +.|.
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~-~~i~ 202 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKG-KTMV 202 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC-CEEE
Confidence 5788999999999999999999999999998763 4443
No 312
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=25.19 E-value=36 Score=26.45 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=35.1
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 128 R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
|.+..-..|....++++.+.+-.-+.+.++|+..||.|.-||-
T Consensus 11 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 53 (212)
T 3knw_A 11 KSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYH 53 (212)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHH
Confidence 3344456777888889988877789999999999999999984
No 313
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=24.70 E-value=27 Score=28.72 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=34.5
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
....=..|..-.++++.+.+-.-+.+.++|+..||.|.-||-
T Consensus 44 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~aGvs~~t~Y~ 85 (245)
T 3aqt_A 44 REQTRARLITSARTLMAERGVDNVGIAEITEGANIGTGTFYN 85 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhCCChHHHHH
Confidence 334445677778999988777789999999999999999994
No 314
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=24.44 E-value=1.1e+02 Score=20.88 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHH-HhCCCCceeHHHHHHHhcccceehhhhhh
Q 023564 133 LGLLTRKFINLI-QEAKDGTLDLNRTAEVLEVQKRRIYDITN 173 (280)
Q Consensus 133 LglLTkkFI~ll-~~a~~g~ldLn~aA~~L~VqKRRIYDItN 173 (280)
+..+-+.+|... ... | +...+|+.|||.|+.+|.-+.
T Consensus 18 l~~~Er~~I~~aL~~~--g--n~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 18 IGFYEAQVLKLFYAEY--P--STRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp CSHHHHHHHHHHHHHS--C--SHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--C--CHHHHHHHhCCCHHHHHHHHH
Confidence 445556666544 444 3 678999999999999997654
No 315
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=24.06 E-value=49 Score=26.14 Aligned_cols=40 Identities=8% Similarity=0.047 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
+..=..|....++++.+.. .-+.+.++|+..||.|.-||-
T Consensus 19 ~~~r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~ 58 (215)
T 2hku_A 19 RQTRDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVTY 58 (215)
T ss_dssp -CHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHH
Confidence 3444667788899998888 999999999999999999994
No 316
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=23.87 E-value=49 Score=25.22 Aligned_cols=37 Identities=11% Similarity=0.037 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhh
Q 023564 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDI 171 (280)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDI 171 (280)
.|....++++.+.+=..+.+.++|++.||.|.-||--
T Consensus 6 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 42 (194)
T 3bqz_B 6 KILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYH 42 (194)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHHh
Confidence 4667788888887777899999999999999999853
No 317
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=23.85 E-value=66 Score=22.08 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhh
Q 023564 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNV 174 (280)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNV 174 (280)
+..+-+.+|...-..-+| +...||+.|||.++.+|.-+.-
T Consensus 16 l~~~E~~~i~~aL~~~~g--n~~~aA~~LGisr~tL~rklkk 55 (63)
T 3e7l_A 16 KKEFEKIFIEEKLREYDY--DLKRTAEEIGIDLSNLYRKIKS 55 (63)
T ss_dssp HHHHHHHHHHHHHHHTTT--CHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC--CHHHHHHHHCcCHHHHHHHHHH
Confidence 334445555444333333 4679999999999999987653
No 318
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.78 E-value=1.3e+02 Score=22.13 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023564 203 DDQVARLKAEIESLHAEECRIDDSIREKQELIR 235 (280)
Q Consensus 203 ~~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~ 235 (280)
...+..|..+.+.|..+-..|-+.|..++..+.
T Consensus 35 E~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 35 ETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555554444
No 319
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=23.61 E-value=35 Score=27.14 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=33.5
Q ss_pred eeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEE
Q 023564 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (280)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (280)
+...++|+.||+.+..+.-+++-|+.-|+|+.. ++.|.-
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~i 185 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIRSG-YGKIQL 185 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC-CCEEEE
Confidence 577999999999999999999999999999965 444443
No 320
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=23.56 E-value=1.3e+02 Score=24.86 Aligned_cols=41 Identities=10% Similarity=0.068 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCccc
Q 023564 207 ARLKAEIESLHAEECRIDDSIREKQELIRTLEENENHQKYM 247 (280)
Q Consensus 207 ~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lted~~n~~~~ 247 (280)
..|+..+..+..+-..++.+|.++.+++.++..-..+..|.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 43 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLI 43 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcEEE
Confidence 45677777777777788888888888888886543344443
No 321
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=23.45 E-value=54 Score=25.21 Aligned_cols=41 Identities=12% Similarity=0.196 Sum_probs=34.5
Q ss_pred CCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
+..=..|..-.++++.+.+-.-+.+.++|+..||.|.-||-
T Consensus 15 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 55 (211)
T 3him_A 15 SKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYP 55 (211)
T ss_dssp CHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhhh
Confidence 33445788889999988877789999999999999999984
No 322
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=23.39 E-value=35 Score=27.40 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=33.0
Q ss_pred eeHHHHHHHhcccceehhhhhhhhhhccccccccCCce
Q 023564 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHI 189 (280)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i 189 (280)
+.-.++|+.||+.+..+.-+.+-|+.-|+|+... +.|
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~-~~i 224 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLHARG-KTV 224 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEECC-CEE
Confidence 5789999999999999999999999999999864 444
No 323
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=23.35 E-value=89 Score=22.80 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023564 207 ARLKAEIESLHAEECRIDDSIREKQELIRTL 237 (280)
Q Consensus 207 ~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~L 237 (280)
..|++.++.|..+-.+|..++..+...+...
T Consensus 42 ~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 72 (99)
T 1q08_A 42 GIVQERLQEVEARIAELQSMQRSLQRLNDAC 72 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 324
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=23.33 E-value=1.6e+02 Score=23.76 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023564 204 DQVARLKAEIESLHAEECRIDDSIREKQELIRTL 237 (280)
Q Consensus 204 ~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~L 237 (280)
.++++|++||++++...++|-+.-..-.+..++.
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFRea 37 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKA 37 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999988888887776666666654
No 325
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=23.20 E-value=56 Score=30.55 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=32.8
Q ss_pred CCceeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 149 DGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 149 ~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
.+.+.+..+++.++++++...-.++-|...|++++..
T Consensus 309 ~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~~~ 345 (373)
T 3eqx_A 309 QPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQ 345 (373)
T ss_dssp CSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC-
T ss_pred CCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEEeC
Confidence 3468899999999999999999999999999999874
No 326
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=23.14 E-value=46 Score=25.24 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
..|....++++.+.+-..+.+.++|+..||.|.-||-
T Consensus 11 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 47 (194)
T 2g7s_A 11 DDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHH 47 (194)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHH
Confidence 3566778888888777789999999999999999984
No 327
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=23.03 E-value=49 Score=25.00 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhh
Q 023564 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDI 171 (280)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDI 171 (280)
.|....++++.+.+-.-+.+.++|++.||.|.-||--
T Consensus 8 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 44 (170)
T 3egq_A 8 RIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYH 44 (170)
T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHH
Confidence 4566778888776666899999999999999999954
No 328
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=22.96 E-value=81 Score=25.69 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=33.7
Q ss_pred ceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceE
Q 023564 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (280)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (280)
.+...++|+.||+.+..+.-+.+-|+.-|+|+.. ++.|.
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~-~~~i~ 224 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLNELQDNGLIELH-RKEIL 224 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEE-TTEEE
T ss_pred cCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEec-CCEEE
Confidence 3578999999999999999999999999999876 34443
No 329
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=22.92 E-value=2.3e+02 Score=21.14 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=30.8
Q ss_pred HHHHHHhCCCCceeH-HHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 140 FINLIQEAKDGTLDL-NRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 140 FI~ll~~a~~g~ldL-n~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
.+.++...|..-.+| ..+++.+++..--||-++.-||.-|+|++.
T Consensus 14 IL~~L~~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~ 59 (108)
T 3l7w_A 14 ILAIVSKHDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTY 59 (108)
T ss_dssp HHHHHHHSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEE
Confidence 444555443322333 223344689999999999999999999986
No 330
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.57 E-value=1.3e+02 Score=23.66 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023564 203 DDQVARLKAEIESLHAEECRIDDSIREK 230 (280)
Q Consensus 203 ~~~~~~Lk~El~~L~~eE~~LD~~I~~~ 230 (280)
+.-...|+.||..|..+-..||..+...
T Consensus 46 d~t~~eL~~EI~~L~~eI~~LE~iqs~a 73 (96)
T 1t3j_A 46 DMTQKHLEEEIARLSKEIDQLEKMQNNS 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445567777888877777777766654
No 331
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.54 E-value=1e+02 Score=28.70 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023564 213 IESLHAEECRIDDSIREKQELIRTLEE 239 (280)
Q Consensus 213 l~~L~~eE~~LD~~I~~~~~~L~~Lte 239 (280)
-+.|+.+-.++|..|.++.+.++++..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 451 NARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 333444444444444444444444443
No 332
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=22.37 E-value=58 Score=25.29 Aligned_cols=38 Identities=16% Similarity=0.068 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
=..|....++++.+.+-.-+.+.++|+..||.|.-||-
T Consensus 11 r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 48 (193)
T 2dg8_A 11 RERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTY 48 (193)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhhe
Confidence 35678889999988877789999999999999999993
No 333
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=22.33 E-value=28 Score=26.77 Aligned_cols=44 Identities=11% Similarity=0.019 Sum_probs=34.2
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhh
Q 023564 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDI 171 (280)
Q Consensus 128 R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDI 171 (280)
|.+..=..|....++++.+.+-.-+.+.++|+..||.|.-||--
T Consensus 11 ~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 54 (191)
T 4aci_A 11 KPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHH 54 (191)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHHH
Confidence 34444567888888888877666799999999999999999954
No 334
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=22.29 E-value=46 Score=27.37 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 133 LGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 133 LglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
-..|....++++.+.+-.-+.+.++|+..||.|.-||-
T Consensus 25 r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~ 62 (231)
T 2zcx_A 25 EEAILDAARELGTERGIREITLTDIAATVGMHKSALLR 62 (231)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHH
Confidence 34577778888887777789999999999999999985
No 335
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.11 E-value=1e+02 Score=23.79 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccc
Q 023564 131 SSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 131 ~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
..|..-=...+.++.++.+.-|+..+++.+++++.+-+-=|+-.||.-|||.+.
T Consensus 33 ~~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp CSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEe
Confidence 344444455677778888888999999999999999999999999999999876
No 336
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=22.10 E-value=39 Score=26.08 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
+..=..|....++++.+.+-.-+.+.++|+..||.|.-||-
T Consensus 11 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 51 (202)
T 3lwj_A 11 KERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYN 51 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHH
Confidence 33345677788899988777789999999999999999984
No 337
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=22.05 E-value=3.2e+02 Score=23.52 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=31.1
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhh
Q 023564 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDIT 172 (280)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDIt 172 (280)
++.||-.+-.+...++. .| +.-.++|+.|||+|-.+--.+
T Consensus 6 ke~sl~eiG~ria~~y~---~g-~tQ~eIA~~lGiSr~~VSR~L 45 (192)
T 1zx4_A 6 LQHSIREIGLRLMRMKN---DG-MSQKDIAAKEGLSQAKVTRAL 45 (192)
T ss_dssp CSSCHHHHHHHHHHHHH---TT-CCHHHHHHHHTCCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH---cC-CCHHHHHHHhCcCHHHHHHHH
Confidence 36788899999888853 22 889999999999887665543
No 338
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=21.86 E-value=32 Score=27.30 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=31.6
Q ss_pred eeHHHHHHHhcccceehhhhhhhhhhcccccccc
Q 023564 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTS 185 (280)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~ 185 (280)
+...++|+.||+++..+.-+++-|+.-|+|+...
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 173 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGLIATAY 173 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEET
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 5788999999999999999999999999998774
No 339
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.57 E-value=80 Score=28.78 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023564 203 DDQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (280)
Q Consensus 203 ~~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lt 238 (280)
...+..|+.++..|..+...|-+.++.++++|..|.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lk 88 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALR 88 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777776665555555555555555554443
No 340
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=21.56 E-value=31 Score=33.74 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=33.7
Q ss_pred CCCceeHHHHHHHhcccceehhhhhhhhhhccccc
Q 023564 148 KDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIE 182 (280)
Q Consensus 148 ~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIe 182 (280)
.||..+|-++|+++++.=.+++|+.+.|..-|||+
T Consensus 399 ~dG~~slldia~~~~~~~~~~~~~~~~l~~~~l~~ 433 (435)
T 3k9t_A 399 SDGKNSLLDIAYKSGMEFRRIKYAADALYRVELLK 433 (435)
T ss_dssp CEEEEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEE
T ss_pred ccCCccHHHHHHHhCcCHHHHHHHHHHHHHccCcc
Confidence 68999999999999999999999999999999987
No 341
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=21.31 E-value=1.1e+02 Score=23.82 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 132 SLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 132 SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
.=..|....++++.+.+=.-+.++++|+..||.|.-||-
T Consensus 15 ~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~ 53 (203)
T 3ccy_A 15 IRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYH 53 (203)
T ss_dssp HHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTT
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeee
Confidence 335677888889988887889999999999999999994
No 342
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=21.28 E-value=43 Score=25.99 Aligned_cols=43 Identities=14% Similarity=0.104 Sum_probs=35.3
Q ss_pred CCCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 128 RYDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 128 R~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
|.+..=..|....+.++.+.+-.-+.+.++|+..||.|.-||-
T Consensus 23 ~~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 65 (217)
T 3mvp_A 23 RSIEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYA 65 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHH
Confidence 3344455678888999988777789999999999999999995
No 343
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=21.23 E-value=63 Score=26.11 Aligned_cols=37 Identities=11% Similarity=0.247 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
..|....++++.+.+-.-+.+.++|+..||.|.-||-
T Consensus 16 ~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y~ 52 (231)
T 2qib_A 16 QQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYH 52 (231)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHH
Confidence 4677889999988877789999999999999999993
No 344
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=20.95 E-value=61 Score=24.81 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhh
Q 023564 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDI 171 (280)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDI 171 (280)
..|...+++++.+.+-.-+.+.++|+..||.+.-||--
T Consensus 17 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (203)
T 3f1b_A 17 QQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLY 54 (203)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHH
Confidence 45778889999887777899999999999999999953
No 345
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=20.91 E-value=46 Score=29.99 Aligned_cols=41 Identities=2% Similarity=0.054 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhh
Q 023564 135 LLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVL 175 (280)
Q Consensus 135 lLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVL 175 (280)
....+++.++.+.....+.+.++|+.+++++|.++..++-.
T Consensus 305 ~~~~~~~~~i~~~~~~~~~~~~~a~~~~~s~~~l~r~f~~~ 345 (412)
T 4fe7_A 305 PAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEE 345 (412)
T ss_dssp HHHHHHHHHHHHHGGGTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 46778889998888889999999999999999999887643
No 346
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=20.86 E-value=42 Score=27.72 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=33.8
Q ss_pred ceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceE
Q 023564 151 TLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIR 190 (280)
Q Consensus 151 ~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~ 190 (280)
.+...++|+.||+.+..+.-+++-|+.-|+|+.. ++.|.
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~-~~~i~ 231 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIH-KKKIT 231 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEc-CCEEE
Confidence 3577999999999999999999999999999976 44443
No 347
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=20.70 E-value=94 Score=26.34 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHh-----cccceehhhhhhhhhhccccccc
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVL-----EVQKRRIYDITNVLEGIGLIEKT 184 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L-----~VqKRRIYDItNVLEgIGLIeK~ 184 (280)
+.++..+-. +..++..++..+ ++....+.+.++.|+..|||++.
T Consensus 285 ~~~l~~la~---g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 285 VDILRAIAL---GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HHHHHHHHT---TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec
Confidence 444444433 346788888877 78888899999999999999986
No 348
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=20.64 E-value=73 Score=26.86 Aligned_cols=42 Identities=12% Similarity=0.194 Sum_probs=35.2
Q ss_pred CCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhh
Q 023564 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDI 171 (280)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDI 171 (280)
..+-..|....++++.+..-.-+.+..+|+++||.+--||--
T Consensus 5 ~~tr~~Il~AA~~l~~~~G~~~~S~r~IA~~aGvs~~tlY~h 46 (234)
T 2opt_A 5 PLTQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYAH 46 (234)
T ss_dssp CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccccCHHHHHHHHCCChhHHHHH
Confidence 344567888899999877777899999999999999999953
No 349
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=20.63 E-value=1.3e+02 Score=22.32 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023564 209 LKAEIESLHAEECRIDDSIREKQELIR 235 (280)
Q Consensus 209 Lk~El~~L~~eE~~LD~~I~~~~~~L~ 235 (280)
.|.|++.|..+-..|+..|..++.+|.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666666666666664
No 350
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=20.56 E-value=91 Score=23.81 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023564 208 RLKAEIESLHAEECRIDDSIREKQELI 234 (280)
Q Consensus 208 ~Lk~El~~L~~eE~~LD~~I~~~~~~L 234 (280)
.|+.|+..+.+.-.++.+.|.++.+.|
T Consensus 48 ~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 48 VLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 351
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=20.52 E-value=44 Score=26.91 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=33.6
Q ss_pred eeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEE
Q 023564 152 LDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRW 191 (280)
Q Consensus 152 ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W 191 (280)
+...++|..||+.+..+.-+++-|+.-|+|+.. ++.|.-
T Consensus 178 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~i 216 (227)
T 3d0s_A 178 LTQEEIAQLVGASRETVNKALADFAHRGWIRLE-GKSVLI 216 (227)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEec-CCEEEE
Confidence 578899999999999999999999999999886 344443
No 352
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.51 E-value=1.6e+02 Score=23.63 Aligned_cols=101 Identities=15% Similarity=0.194 Sum_probs=56.4
Q ss_pred HHHHHHHHhCCCCceeHHHHHHHhcccceehhhhhhhhhhccccccccCCceEEecCCCCCCchh---------------
Q 023564 138 RKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGSDSLGTSKL--------------- 202 (280)
Q Consensus 138 kkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDItNVLEgIGLIeK~~KN~i~W~G~~~s~~~~~--------------- 202 (280)
..|..++++-....-.|..--..|..-.-+|=|+..+++.|..+.+.+...+.=.|.+..-++.+
T Consensus 12 ~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~ 91 (151)
T 2zdi_C 12 EKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYA 91 (151)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeE
Confidence 34444444444444444444444433356667888888888777654444455566543222222
Q ss_pred -HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023564 203 -DDQ----VARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (280)
Q Consensus 203 -~~~----~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lt 238 (280)
+.. +..|+..++.|...-..|++.+.++++++..+.
T Consensus 92 vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~ 132 (151)
T 2zdi_C 92 VERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVA 132 (151)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 234566667777777777777777777776654
No 353
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.46 E-value=2e+02 Score=22.74 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023564 202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTL 237 (280)
Q Consensus 202 ~~~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~L 237 (280)
..+.+..|+.+|+.|+.+-..|-+.|..+.-+|...
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999988764
No 354
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.33 E-value=79 Score=26.67 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=35.7
Q ss_pred CCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhh
Q 023564 130 DSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDI 171 (280)
Q Consensus 130 d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDI 171 (280)
..+-..|...-++++.+..-.-+.+.++|+++||.+.-||--
T Consensus 18 ~~tr~~Il~AA~~l~~e~G~~~~S~~~IA~~aGvs~~tlY~h 59 (243)
T 2g7l_A 18 ALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYVY 59 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHhcCchhcCHHHHHHHHCCChhHHHHH
Confidence 345567888899999887777899999999999999999953
No 355
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=20.30 E-value=66 Score=24.49 Aligned_cols=37 Identities=11% Similarity=0.105 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 134 GLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 134 glLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
..|....++++.+.+-.-+.+.++|+..||.|.-||-
T Consensus 10 ~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 46 (199)
T 3qbm_A 10 ERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYR 46 (199)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHHH
Confidence 4566678888888777889999999999999999984
No 356
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=20.24 E-value=78 Score=24.55 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=34.2
Q ss_pred CcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhhh
Q 023564 131 SSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYDI 171 (280)
Q Consensus 131 ~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYDI 171 (280)
..=..|....++++.+.+-.-+.+.++|+..||.|.-||--
T Consensus 13 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~ 53 (217)
T 3nrg_A 13 EKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQY 53 (217)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCTTGGGGT
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHHH
Confidence 33456778888999887777899999999999999999953
No 357
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.09 E-value=2.4e+02 Score=21.08 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023564 207 ARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (280)
Q Consensus 207 ~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lt 238 (280)
..++.++..|..+-..|...|..+...+..|.
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888899999988888887775
No 358
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=20.03 E-value=73 Score=24.23 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=33.7
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCceeHHHHHHHhcccceehhh
Q 023564 129 YDSSLGLLTRKFINLIQEAKDGTLDLNRTAEVLEVQKRRIYD 170 (280)
Q Consensus 129 ~d~SLglLTkkFI~ll~~a~~g~ldLn~aA~~L~VqKRRIYD 170 (280)
.+..=..|....++++.+.+-.-+.+.++|+..||.|.-||-
T Consensus 8 ~~~~r~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 49 (197)
T 3rd3_A 8 YDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYH 49 (197)
T ss_dssp --CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHTT
T ss_pred hHhHHHHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhHHH
Confidence 344446677888888888777789999999999999999984
No 359
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.01 E-value=2.3e+02 Score=21.55 Aligned_cols=37 Identities=16% Similarity=0.361 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023564 202 LDDQVARLKAEIESLHAEECRIDDSIREKQELIRTLE 238 (280)
Q Consensus 202 ~~~~~~~Lk~El~~L~~eE~~LD~~I~~~~~~L~~Lt 238 (280)
....+..|+..|..+..+-..|+-.|..++..+..+.
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566888999999999998999999998888887764
Done!