BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023565
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana In Complex With C-Terminal Peptide
From Arabidopsis Serine Acetyltransferase
Length = 320
Score = 326 bits (835), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 154/250 (61%), Positives = 188/250 (75%), Gaps = 2/250 (0%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I +DVTELIGNTP+VYLNNV +GCV R+AAKLE MEPCSSVKDRI +SMI DAE KGLI
Sbjct: 3 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 62
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PG++ LIE TSGNTGVGLAF AAA+GY LII MP++ S ERRI+L A G E++L D A
Sbjct: 63 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 122
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
TP+GY+L+QFENPANPKIHYETTGPEIW+ +GGK+D F+S
Sbjct: 123 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 182
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVI 246
++LKE N ++K+YGVEP ESA+L+GG+ G H IQGIGAG IPSVL++D++DEV+
Sbjct: 183 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 242
Query: 247 TVS--HKIDL 254
VS ID+
Sbjct: 243 QVSSDESIDM 252
>pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From
Arabidopsis Thaliana
Length = 322
Score = 325 bits (834), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 154/250 (61%), Positives = 188/250 (75%), Gaps = 2/250 (0%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I +DVTELIGNTP+VYLNNV +GCV R+AAKLE MEPCSSVKDRI +SMI DAE KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PG++ LIE TSGNTGVGLAF AAA+GY LII MP++ S ERRI+L A G E++L D A
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
TP+GY+L+QFENPANPKIHYETTGPEIW+ +GGK+D F+S
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVI 246
++LKE N ++K+YGVEP ESA+L+GG+ G H IQGIGAG IPSVL++D++DEV+
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 244
Query: 247 TVS--HKIDL 254
VS ID+
Sbjct: 245 QVSSDESIDM 254
>pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana
O-Acetylserine Sulfhydrylase K46a Mutant
Length = 322
Score = 323 bits (829), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 153/250 (61%), Positives = 187/250 (74%), Gaps = 2/250 (0%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I +DVTELIGNTP+VYLNNV +GCV R+AAKLE MEPCSSV DRI +SMI DAE KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVADRIGFSMISDAEKKGLIK 64
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PG++ LIE TSGNTGVGLAF AAA+GY LII MP++ S ERRI+L A G E++L D A
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
TP+GY+L+QFENPANPKIHYETTGPEIW+ +GGK+D F+S
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVI 246
++LKE N ++K+YGVEP ESA+L+GG+ G H IQGIGAG IPSVL++D++DEV+
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 244
Query: 247 TVS--HKIDL 254
VS ID+
Sbjct: 245 QVSSDESIDM 254
>pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
pdb|4AEC|B Chain B, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl-
Serine-(Thiol)-Lyase C
Length = 430
Score = 308 bits (789), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 145/249 (58%), Positives = 179/249 (71%)
Query: 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDK 62
D I +V++LIG TPMVYLN++ GCVA IAAKLE MEPC SVKDRI YSM+ DAE K
Sbjct: 109 DGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQK 168
Query: 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
G I+PGK+ L+E TSGNTG+GLAFIAA+RGY LI+ MP++ SMERR++L+A GAE++L D
Sbjct: 169 GFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTD 228
Query: 123 SALRFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXX 182
A TPD Y+L+QF+NPANPKIHYETTGPEIW D+ GKVD F++
Sbjct: 229 PAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGI 288
Query: 183 XXXXXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDIL 242
RF+KE NP +V GVEP+ES +L+GG+ G H IQGIGAG IP LD I+
Sbjct: 289 GTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIM 348
Query: 243 DEVITVSHK 251
DEVI +S +
Sbjct: 349 DEVIAISSE 357
>pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
pdb|3VBE|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean
Length = 344
Score = 276 bits (705), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 125/243 (51%), Positives = 171/243 (70%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
IK+ V++LIG TP+VYLN V +GC A +A K E M+P +S+KDR AY+MI DAE+K LIT
Sbjct: 25 IKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIKDRPAYAMITDAEEKNLIT 84
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PGKTTLIE TSGN G+ +AF+AA +GY +++ MPS S+ERR+ +RA GAE+IL D A
Sbjct: 85 PGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKG 144
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
TP+ ++L+QF NPAN ++H+ETTGPEIW+D+ G+VD F+
Sbjct: 145 MGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGG 204
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVI 246
++LK NP++K+YGVEPSES VLNGG+ G H I G G G P +LD+D++++V+
Sbjct: 205 TVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEKVL 264
Query: 247 TVS 249
VS
Sbjct: 265 EVS 267
>pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|B Chain B, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|C Chain C, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|D Chain D, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|E Chain E, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
pdb|3VC3|F Chain F, Crystal Structure Of Beta-Cyanoalanine Synthase K95a
Mutant In Soybean
Length = 344
Score = 273 bits (699), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 170/243 (69%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
IK+ V++LIG TP+VYLN V +GC A +A K E M+P +S+ DR AY+MI DAE+K LIT
Sbjct: 25 IKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLIT 84
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PGKTTLIE TSGN G+ +AF+AA +GY +++ MPS S+ERR+ +RA GAE+IL D A
Sbjct: 85 PGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKG 144
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
TP+ ++L+QF NPAN ++H+ETTGPEIW+D+ G+VD F+
Sbjct: 145 MGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGG 204
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVI 246
++LK NP++K+YGVEPSES VLNGG+ G H I G G G P +LD+D++++V+
Sbjct: 205 TVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEKVL 264
Query: 247 TVS 249
VS
Sbjct: 265 EVS 267
>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
Complex With The Reaction Intermediate
Alpha-aminoacrylate
Length = 313
Score = 227 bits (579), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 116/251 (46%), Positives = 156/251 (62%), Gaps = 1/251 (0%)
Query: 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
+I D+T+LIG TP+V L V DG VA I AKLE P +SVKDRI +M++ AE GLI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLI 64
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
P T ++E TSGNTG+ LA + AARGY ++ MP T S+ERR++LRA GAE+IL A
Sbjct: 65 KP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
++ +QFENPANP IH TT E+W+D+ GKVD ++
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183
Query: 186 XXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEV 245
+ +KE P + VEP+ S VL+GGQ+G H IQGIGAG +P VLD D++DE+
Sbjct: 184 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEI 243
Query: 246 ITVSHKIDLHL 256
ITV ++ L++
Sbjct: 244 ITVGNEDALNV 254
>pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine
Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc
Baa-535 M
Length = 314
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/251 (46%), Positives = 155/251 (61%), Gaps = 3/251 (1%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I ++T+LIG TP+V L V DG A + AKLE+ P S+KDRI +MI AE GLI
Sbjct: 7 IAENITQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
P T ++E TSGNTG+ LA ++AARGY ++ MP T S+ERR++LRA GAE++L A
Sbjct: 67 P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGA-E 124
Query: 127 FXXXXXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
T D Y + +QFENPANP +H TT E+W+D+ GKVD F+S
Sbjct: 125 GMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTG 184
Query: 186 XXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEV 245
+ +K+ P + VEP+ S VL+GGQ+G H IQGIGAG +P VLD+ ++DEV
Sbjct: 185 GTITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDLALVDEV 244
Query: 246 ITVSHKIDLHL 256
ITV + L L
Sbjct: 245 ITVGNDDALEL 255
>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis
pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
Tuberculosis In Complex With The Inhibitory Peptide Dfsi
Length = 313
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/251 (45%), Positives = 155/251 (61%), Gaps = 1/251 (0%)
Query: 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
+I D+T+LIG TP+V L V DG VA I AKLE P +SV DRI +M++ AE GLI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVXDRIGVAMLQAAEQAGLI 64
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
P T ++E TSGNTG+ LA + AARGY ++ MP T S+ERR++LRA GAE+IL A
Sbjct: 65 KP-DTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
++ +QFENPANP IH TT E+W+D+ GKVD ++
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183
Query: 186 XXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEV 245
+ +KE P + VEP+ S VL+GGQ+G H IQGIGAG +P VLD D++DE+
Sbjct: 184 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEI 243
Query: 246 ITVSHKIDLHL 256
ITV ++ L++
Sbjct: 244 ITVGNEDALNV 254
>pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|B Chain B, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|C Chain C, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
pdb|4I1Y|D Chain D, The Structure Of Cysteine Synthase From Mycobacterium
Ulcerans Agy99
Length = 314
Score = 223 bits (568), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 115/251 (45%), Positives = 154/251 (61%), Gaps = 3/251 (1%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I ++ +LIG TP+V L V DG A + AKLE+ P S+KDRI +MI AE GLI
Sbjct: 7 IAENIAQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIK 66
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
P T ++E TSGNTG+ LA ++AARGY ++ MP T S+ERR++LRA GAE++L A
Sbjct: 67 P-DTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGA-E 124
Query: 127 FXXXXXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
T D Y + +QFENPANP +H TT E+W+D+ GKVD F+S
Sbjct: 125 GMAGAIAKAEELAKTDDRYFIPQQFENPANPAVHAVTTAEEVWRDTDGKVDIFVSGVGTG 184
Query: 186 XXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEV 245
+ +K+ P + VEP+ S VL+GGQ+G H IQGIGAG +P VLD+ ++DEV
Sbjct: 185 GTITGVAQVIKQRRPSAQFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDLALVDEV 244
Query: 246 ITVSHKIDLHL 256
ITV + L L
Sbjct: 245 ITVGNDDALEL 255
>pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From
Geobacillus Kaustophilus Hta426
Length = 308
Score = 213 bits (543), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 116/240 (48%), Positives = 154/240 (64%), Gaps = 4/240 (1%)
Query: 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
+TELIG+TP V LN +VD A + KLE M P SSVKDRIA +MI+ AE G + PG T
Sbjct: 8 ITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDT 67
Query: 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXX 130
++E TSGNTG+GLA +AAA+GY ++VMP T S+ERR +LRA GAE++L A
Sbjct: 68 -IVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGA 126
Query: 131 XXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXX 189
GY + +QF+N ANP+IH TTG EI + G ++DAF++
Sbjct: 127 IAKAEELVRE--HGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGGTIT 184
Query: 190 XXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVITVS 249
+ L+E P+IK+Y VEP++S VL+GG+ G H IQGIGAG +P +LD I D VITV+
Sbjct: 185 GAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVITVT 244
>pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase
pdb|2ECO|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Methylvalerate
pdb|2ECQ|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 3-Hydroxylactate
pdb|2EFY|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
pdb|2EFY|B Chain B, Crystal Structure Of T.Th. Hb8 O-Acetylserine
Sulfhydrylase Complexed With 4-Acetylbutyric Acid
Length = 304
Score = 207 bits (527), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 148/238 (62%), Gaps = 2/238 (0%)
Query: 15 IGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGK-TTLI 73
IG TP+V L VV+ +A + KLE + P S+KDR A+ MIKDAE++G++ PG ++
Sbjct: 7 IGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIV 66
Query: 74 EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXX 133
E TSGNTG+GLA IAA+RGY LI+ MP+ S ER+ VL+A GAE++L D R
Sbjct: 67 EPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREE 126
Query: 134 XXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXXR 193
++ QF+NPAN + HYETTGPE+++ G++DAF+ R
Sbjct: 127 ALRLKEEL-GAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGR 185
Query: 194 FLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVITVSHK 251
+LKE P +KV VEP+ S VL+GG+ G+H QG+G G IP LD+ +LD VI V +
Sbjct: 186 YLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVWEE 243
>pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1OAS|B Chain B, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium
pdb|1FCJ|A Chain A, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|B Chain B, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|C Chain C, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
pdb|1FCJ|D Chain D, Crystal Structure Of Oass Complexed With Chloride And
Sulfate
Length = 322
Score = 196 bits (499), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 109/254 (42%), Positives = 155/254 (61%), Gaps = 13/254 (5%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I D + IG+TP+V LN + +G RI AK+E+ P SVK RI +MI DAE +G++
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK 59
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PG L+E T+GNTG+ LA++AAARGY L + MP T S+ERR +L+ALGA ++L + A
Sbjct: 60 PG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 127 FXXXXXXXXXXXXXTPDGY-LLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
P Y LL+QF NPANP+IH +TTGPEIW+D+ G+VD FIS
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 186 XXXXXXXRFLK--ENNPDIKVYGVEPSESAVLNGG------QRGKHLIQGIGAGIIPSVL 237
R++K + D+ VEP++S V+ + G H IQGIGAG IP L
Sbjct: 179 GTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNL 238
Query: 238 DIDILDEVITVSHK 251
D+ ++D+V+ ++++
Sbjct: 239 DLKLIDKVVGITNE 252
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 141/243 (58%), Gaps = 1/243 (0%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
+ + + +LIG TP +YLN + + A++ K+E P +SVKDR+ +++ AE +G +
Sbjct: 32 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLI 90
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PGK+ ++E +SGNTGV LA + A RGY +II MP + S+ERR +LR GAE+IL +AL
Sbjct: 91 PGKSVVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 150
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
P+ L QF N IH ETTGPEIW+ + VD FI+
Sbjct: 151 MKGAVTMAKKIVTANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 210
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVI 246
R LK+ ++ VEP ES VL+GG+ G H IQGIG G +P VLD ++DEV
Sbjct: 211 TLTGVARALKKMGSHARIVAVEPMESPVLSGGKPGAHKIQGIGPGFVPDVLDRSLIDEVF 270
Query: 247 TVS 249
V+
Sbjct: 271 CVA 273
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 142/243 (58%), Gaps = 1/243 (0%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
+ + + +LIG TP +YLN + + A++ K+E P +SV DR+ +++ AE +G +
Sbjct: 11 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVXDRLGFAIYDKAEKEGKLI 69
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PGK+ ++E +SGNTGV LA + A RGY +II MP + S+ERR +LR GAE+IL +AL
Sbjct: 70 PGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 129
Query: 127 FXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXX 186
P+ L QF N IH ETTGPEIW+ + VD FI+
Sbjct: 130 MKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 189
Query: 187 XXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVI 246
R LK+ ++ VEP+ES VL+GG+ G H IQGIG G +P VLD ++DEV+
Sbjct: 190 TLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLIDEVL 249
Query: 247 TVS 249
V+
Sbjct: 250 CVA 252
>pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
pdb|1D6S|B Chain B, Crystal Structure Of The K41a Mutant Of O-Acetylserine
Sulfhydrylase Complexed In External Aldimine Linkage
With Methionine
Length = 322
Score = 194 bits (493), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 154/254 (60%), Gaps = 13/254 (5%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I D + IG+TP+V LN + +G RI AK+E+ P SV RI +MI DAE +G++
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVACRIGANMIWDAEKRGVLK 59
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PG L+E T+GNTG+ LA++AAARGY L + MP T S+ERR +L+ALGA ++L + A
Sbjct: 60 PG-VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 127 FXXXXXXXXXXXXXTPDGY-LLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
P Y LL+QF NPANP+IH +TTGPEIW+D+ G+VD FIS
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 186 XXXXXXXRFLK--ENNPDIKVYGVEPSESAVLNGG------QRGKHLIQGIGAGIIPSVL 237
R++K + D+ VEP++S V+ + G H IQGIGAG IP L
Sbjct: 179 GTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNL 238
Query: 238 DIDILDEVITVSHK 251
D+ ++D+V+ ++++
Sbjct: 239 DLKLIDKVVGITNE 252
>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
pdb|3FCA|B Chain B, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid
Into Proteins As Biophysical Probe
Length = 291
Score = 177 bits (448), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 140/249 (56%), Gaps = 9/249 (3%)
Query: 14 LIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLI 73
LIG+TP+V L D +RI KLE P SVKDR A MI DAE +GL+ K ++
Sbjct: 5 LIGSTPIVRL----DSIDSRIXLKLEKNNPGGSVKDRPALFMILDAEKRGLL---KNGIV 57
Query: 74 EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXX 133
E TSGN G+ +A I A RG+ +I+ MP T S+ERR VL+ LGAE++L L
Sbjct: 58 EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEK 117
Query: 134 XXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXXR 193
T ++L QFENP N H TTGPEI + ++DAF++ R
Sbjct: 118 ALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGR 176
Query: 194 FLKEN-NPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVITVSHKI 252
LK +K+ VEP++S VL+GGQ GKH IQGIGAG +P +LD ++DEVITV +
Sbjct: 177 VLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEE 236
Query: 253 DLHLLHFCC 261
+ +
Sbjct: 237 AYEMARYLA 245
>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
pdb|1O58|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665)
From Thermotoga Maritima At 1.80 A Resolution
Length = 303
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 140/249 (56%), Gaps = 9/249 (3%)
Query: 14 LIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLI 73
LIG+TP+V L D +RI KLE P SVKDR A MI DAE +GL+ K ++
Sbjct: 17 LIGSTPIVRL----DSIDSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLL---KNGIV 69
Query: 74 EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXX 133
E TSGN G+ +A I A RG+ +I+ MP T S+ERR VL+ LGAE++L L
Sbjct: 70 EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEK 129
Query: 134 XXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXXR 193
T ++L QFENP N H TTGPEI + ++DAF++ R
Sbjct: 130 ALEISRET-GAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGR 188
Query: 194 FLKEN-NPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVITVSHKI 252
LK +K+ VEP++S VL+GGQ GKH IQGIGAG +P +LD ++DEVITV +
Sbjct: 189 VLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEE 248
Query: 253 DLHLLHFCC 261
+ +
Sbjct: 249 AYEMARYLA 257
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 135/260 (51%), Gaps = 17/260 (6%)
Query: 13 ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTL 72
+ IGNTP+V L + + + KLE P SVKDR A SMI +AE +G I PG L
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV-L 64
Query: 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXX 132
IE TSGNTG+ LA IAA +GY + ++MP S ERR +RA GAE+IL + +
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV-TKEQGMEGAR 123
Query: 133 XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXX 192
+G LL QF NP NP HY TTGPEIWQ +GG++ F+S
Sbjct: 124 DLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVITVSHKI 252
RF++E + + + G++P E + + G +R +P + + ++DEV+ + +
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPGIRRWP-------TEYLPGIFNASLVDEVLDIHQRD 236
Query: 253 DLHLLH--------FCCCSS 264
+ + FC SS
Sbjct: 237 AENTMRELAVREGIFCGVSS 256
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 134/260 (51%), Gaps = 17/260 (6%)
Query: 13 ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTL 72
+ IGNTP+V L + + + KLE P SV DR A SMI +AE +G I PG L
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGRIKPGDV-L 64
Query: 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXX 132
IE TSGNTG+ LA IAA +GY + ++MP S ERR +RA GAE+IL + +
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV-TKEQGMEGAR 123
Query: 133 XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXX 192
+G LL QF NP NPK HY TTGPEIWQ +GG++ F+S
Sbjct: 124 DLALEMANRGEGKLLDQFNNPDNPKAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVITVSHKI 252
F++E + + + G++P E + + G +R +P + + ++DEV+ + +
Sbjct: 184 EFMREQSKPVTIVGLQPEEGSSIPGIRRWP-------TEYLPGIFNASLVDEVLDIHQRD 236
Query: 253 DLHLLH--------FCCCSS 264
+ + FC SS
Sbjct: 237 AENTMRELAVREGIFCGVSS 256
>pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|B Chain B, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|C Chain C, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|D Chain D, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|E Chain E, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|F Chain F, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|G Chain G, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
pdb|2JC3|H Chain H, Structure Of O-acetylserine Sulfhydrylase B From
Salmonella Typhimurium
Length = 303
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 130/241 (53%), Gaps = 10/241 (4%)
Query: 13 ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTL 72
+ IGNTP+V L + + I KLE P SVKDR A SMI +AE +G I PG L
Sbjct: 6 QTIGNTPLVKLQRIGPDNGSEIWVKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV-L 64
Query: 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXX 132
IE TSGNTG+ LA IAA +GY + ++MP S ERR +RA GAE+IL + +
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV-TKEQGMEGAR 123
Query: 133 XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXX 192
+G LL QF NP NP HY TTGPEIW+ + G++ F+S
Sbjct: 124 DLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWRQTSGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVITVSHKI 252
RFL+E + + G++P E + + G +R A +P + + ++DEV+ + H+
Sbjct: 184 RFLREQEKPVTIVGLQPEEGSSIPGIRRWP-------AEYMPGIFNASLVDEVLDI-HQN 235
Query: 253 D 253
D
Sbjct: 236 D 236
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 134/260 (51%), Gaps = 17/260 (6%)
Query: 13 ELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTL 72
+ IGNTP+V L + + + KLE P SV DR A SMI +AE +G I PG L
Sbjct: 6 QTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVXDRAALSMIVEAEKRGEIKPGDV-L 64
Query: 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXX 132
IE TSGNTG+ LA IAA +GY + ++MP S ERR +RA GAE+IL + +
Sbjct: 65 IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILV-TKEQGMEGAR 123
Query: 133 XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXXXX 192
+G LL QF NP NP HY TTGPEIWQ +GG++ F+S
Sbjct: 124 DLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVS 183
Query: 193 RFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVITVSHKI 252
RF++E + + + G++P E + + G +R +P + + ++DEV+ + +
Sbjct: 184 RFMREQSKPVTIVGLQPEEGSSIPGIRRWP-------TEYLPGIFNASLVDEVLDIHQRD 236
Query: 253 DLHLLH--------FCCCSS 264
+ + FC SS
Sbjct: 237 AENTMRELAVREGIFCGVSS 256
>pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex
pdb|3IQG|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnwni
pdb|3IQH|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mnydi
pdb|3IQI|X Chain X, Structure Of O-Acetylserine Sulfhydrylase In Complex With
Peptide Mneni
Length = 316
Score = 160 bits (404), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 140/251 (55%), Gaps = 11/251 (4%)
Query: 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
AI D + IGNTP+V L + G + K+E P SV RI +M+ AE G +
Sbjct: 2 AIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVXCRIGANMVWQAEKDGTL 59
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
T GK +++ TSGNTG+ LA++AAARGY + + MP T S+ER+ +L LG ++L + A
Sbjct: 60 TKGKE-IVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 118
Query: 126 RFXXXXXXXXXXXXXTPDGY-LLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXX 184
P Y +L+QFENPANP+IH ETTGPEIW+D+ GKVD ++
Sbjct: 119 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 178
Query: 185 XXXXXXXXRFLK-ENNPDIKVYGVEPSESAVLN---GGQR---GKHLIQGIGAGIIPSVL 237
R +K + I VEP ES V++ G+ G H IQGIGAG IP L
Sbjct: 179 GGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNL 238
Query: 238 DIDILDEVITV 248
D+ I+D V TV
Sbjct: 239 DLSIIDRVETV 249
>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|B Chain B, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|C Chain C, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|D Chain D, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|E Chain E, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
pdb|1M54|F Chain F, Cystathionine-Beta Synthase: Reduced Vicinal Thiols
Length = 363
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 133/245 (54%), Gaps = 11/245 (4%)
Query: 10 DVTELIGNTPMVYLNNVVD--GCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITP 67
D+ + IG+TPMV +N + G + AK E SVKDRI+ MI+DAE G + P
Sbjct: 36 DILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKP 95
Query: 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF 127
G T +IE TSGNTG+GLA AA RGY IIVMP S E+ VLRALGAEI+ + RF
Sbjct: 96 GDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARF 154
Query: 128 XXXXX---XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXX 184
P+ ++L Q+ N +NP HY+TT EI Q GK+D ++
Sbjct: 155 DSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGT 214
Query: 185 XXXXXXXXRFLKENNPDIKVYGVEP-----SESAVLNGGQRGKHLIQGIGAGIIPSVLDI 239
R LKE P ++ GV+P +E LN ++ + ++GIG IP+VLD
Sbjct: 215 GGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDR 274
Query: 240 DILDE 244
++D+
Sbjct: 275 TVVDK 279
>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'- Phosphate Dependent Hemeprotein
Length = 435
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 133/245 (54%), Gaps = 11/245 (4%)
Query: 10 DVTELIGNTPMVYLNNVVD--GCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITP 67
D+ + IG+TPMV +N + G + AK E SVKDRI+ MI+DAE G + P
Sbjct: 101 DILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKP 160
Query: 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF 127
G T +IE TSGNTG+GLA AA RGY IIVMP S E+ VLRALGAEI+ + RF
Sbjct: 161 GDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARF 219
Query: 128 XXXXX---XXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXX 184
P+ ++L Q+ N +NP HY+TT EI Q GK+D ++
Sbjct: 220 DSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGT 279
Query: 185 XXXXXXXXRFLKENNPDIKVYGVEP-----SESAVLNGGQRGKHLIQGIGAGIIPSVLDI 239
R LKE P ++ GV+P +E LN ++ + ++GIG IP+VLD
Sbjct: 280 GGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTVLDR 339
Query: 240 DILDE 244
++D+
Sbjct: 340 TVVDK 344
>pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
pdb|3BM5|B Chain B, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From
Entamoeba Histolytica In Complex With Cysteine
Length = 338
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 131/247 (53%), Gaps = 7/247 (2%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCV----ARIAAKLETMEPCSSVKDRIAYSMIKDAEDK 62
I ++ E IG TP+V L+ V + RI KLE P SSVKDR+ ++++ A
Sbjct: 12 IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 71
Query: 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
G + PG +IE TSGNTG+ L A GY + I MPST S+ER+++++A GAE+IL +
Sbjct: 72 GRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTE 130
Query: 123 SALRFXXXXXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISX 181
P Y + QF NP N H+ T EIW+D+ G+VD +S
Sbjct: 131 GKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVVSA 189
Query: 182 XXXXXXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDI 241
LKE IK+ VEP ESAVL G +G H IQGIGAG IP + +
Sbjct: 190 VGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKKEF 249
Query: 242 LDEVITV 248
+DE+I +
Sbjct: 250 VDEIIPI 256
>pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
pdb|2PQM|B Chain B, Crystal Structure Of Cysteine Synthase (Oass) From
Entamoeba Histolytica At 1.86 A Resolution
Length = 343
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 131/247 (53%), Gaps = 7/247 (2%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCV----ARIAAKLETMEPCSSVKDRIAYSMIKDAEDK 62
I ++ E IG TP+V L+ V + RI KLE P SSVKDR+ ++++ A
Sbjct: 13 IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 72
Query: 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
G + PG +IE TSGNTG+ L A GY + I MPST S+ER+++++A GAE+IL +
Sbjct: 73 GRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTE 131
Query: 123 SALRFXXXXXXXXXXXXXTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISX 181
P Y + QF NP N H+ T EIW+D+ G+VD +S
Sbjct: 132 GKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTAN-EIWEDTDGEVDIVVSA 190
Query: 182 XXXXXXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDI 241
LKE IK+ VEP ESAVL G +G H IQGIGAG IP + +
Sbjct: 191 VGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKKEF 250
Query: 242 LDEVITV 248
+DE+I +
Sbjct: 251 VDEIIPI 257
>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila
pdb|3PC3|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Aminoacrylate
pdb|3PC4|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From
Drosophila In Complex With Serine
Length = 527
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 127/247 (51%), Gaps = 11/247 (4%)
Query: 7 IKRDVTELIGNTPMVYLNNV--VDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGL 64
I ++ E+IG TP+V LNN+ DG + AK E + P SVKDRI Y M++DAE++GL
Sbjct: 50 ITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGL 109
Query: 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124
+ PG T+IE TSGNTG+GLA A +GY IIVMP S E+ LR LGA+II +
Sbjct: 110 LKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTE 168
Query: 125 LRFXXXX---XXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISX 181
+ TP+ +L Q+ N NP HY+ T EI KVD +
Sbjct: 169 AAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVS 228
Query: 182 XXXXXXXXXXXRFLKENNPDIKVYGVEP-----SESAVLNGGQRGKHLIQGIGAGIIPSV 236
R +KE P ++ GV+P + A LN + ++GIG P+V
Sbjct: 229 AGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFPPTV 288
Query: 237 LDIDILD 243
D ++D
Sbjct: 289 FDDTVVD 295
>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
Found In The Cysteine Biosynthetic Pathway Of
Mycobacterium Tuberculosis
Length = 325
Score = 130 bits (328), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 120/243 (49%), Gaps = 16/243 (6%)
Query: 13 ELIGNTPMVYLNNVV-------DGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
+ +GNTP+V L + DG R+ AKLE P S+KDR A MI+ AE GL+
Sbjct: 11 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 70
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
PG T++E TSGNTG+ LA A +GY LI VMP S+ERR +L GA+II + +
Sbjct: 71 RPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 129
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
P +L Q+ NPAN HY TGPE+ D ++ F++
Sbjct: 130 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 188
Query: 186 XXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEV 245
RFL+E+ ++K+ EP G + ++ + G +P + D +IL
Sbjct: 189 GTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDEGFVPELYDPEILTAR 241
Query: 246 ITV 248
+V
Sbjct: 242 YSV 244
>pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
pdb|3DWI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The
Cysteine Synthase B
Length = 323
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 119/243 (48%), Gaps = 16/243 (6%)
Query: 13 ELIGNTPMVYLNNVV-------DGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
+ +GNTP+V L + DG R+ AKLE P S+KDR A MI+ AE GL+
Sbjct: 9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLL 68
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
PG T++E TSGNTG+ LA A +GY LI VMP S+ERR +L GA+II + +
Sbjct: 69 RPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 127
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
P +L Q+ NPAN HY TGPE+ D ++ F++
Sbjct: 128 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 186
Query: 186 XXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEV 245
RFL+E+ ++ + EP G + ++ + G +P + D +IL
Sbjct: 187 GTLMGTGRFLREHVANVAIVAAEPRYG-------EGVYALRNMDEGFVPELYDPEILTAR 239
Query: 246 ITV 248
+V
Sbjct: 240 YSV 242
>pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3DKI|B Chain B, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium
Tuberculosis An O-Phosphoserine Dependent Cysteine
Synthase
pdb|3FGP|A Chain A, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
pdb|3FGP|B Chain B, 2.05 A Crystal Structure Of Cysm From Mycobacterium
Tuberculosis - Open And Closed Conformations
Length = 326
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 119/243 (48%), Gaps = 16/243 (6%)
Query: 13 ELIGNTPMVYLNNVV-------DGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
+ +GNTP+V L + DG R+ AKLE P S+ DR A MI+ AE GL+
Sbjct: 12 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIXDRPAVRMIEQAEADGLL 71
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
PG T++E TSGNTG+ LA A +GY LI VMP S+ERR +L GA+II + +
Sbjct: 72 RPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEG 130
Query: 126 RFXXXXXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXX 185
P +L Q+ NPAN HY TGPE+ D ++ F++
Sbjct: 131 GSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTT 189
Query: 186 XXXXXXXRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEV 245
RFL+E+ ++K+ EP G + ++ + G +P + D +IL
Sbjct: 190 GTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDEGFVPELYDPEILTAR 242
Query: 246 ITV 248
+V
Sbjct: 243 YSV 245
>pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|1WKV|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase
pdb|3VSA|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
pdb|3VSA|B Chain B, Crystal Structure Of O-Phosphoserine Sulfhydrylase Without
Acetate
Length = 389
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 10/193 (5%)
Query: 33 RIAAKLETMEPCS-SVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91
R+ KLE P S SVKDR A +I + + G + + + TS N GV L+ +A
Sbjct: 111 RVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLY 167
Query: 92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXXXXXXXXXTPDGYL-LRQF 150
GY + +P +++ R LGA++I+ A +G++ + QF
Sbjct: 168 GYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAP--STVHLLPRVMKDSKNEGFVHVNQF 225
Query: 151 ENPANPKIHYETTGPEIWQDS---GGKVDAFISXXXXXXXXXXXXRFLKENNPDIKVYGV 207
N AN + H T EI+ S G + +L+ +P I+ V
Sbjct: 226 YNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLV 285
Query: 208 EPSESAVLNGGQR 220
+P++ + G +R
Sbjct: 286 QPAQGDSIPGIRR 298
>pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSC|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Phospho-L-Serine
pdb|3VSD|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
pdb|3VSD|B Chain B, Crystal Structure Of The K127a Mutant Of O-Phosphoserine
Sulfhydrylase Complexed With External Schiff Base Of
Pyridoxal 5'-Phosphate With O- Acetyl-L-Serine
Length = 389
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 10/193 (5%)
Query: 33 RIAAKLETMEPCS-SVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91
R+ KLE P S SV DR A +I + + G + + + TS N GV L+ +A
Sbjct: 111 RVWLKLEWYNPFSLSVADRPAVEIISRLSRR--VEKG-SLVADATSSNFGVALSAVARLY 167
Query: 92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXXXXXXXXXXXXTPDGYL-LRQF 150
GY + +P +++ R LGA++I+ A +G++ + QF
Sbjct: 168 GYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAP--STVHLLPRVMKDSKNEGFVHVNQF 225
Query: 151 ENPANPKIHYETTGPEIWQDS---GGKVDAFISXXXXXXXXXXXXRFLKENNPDIKVYGV 207
N AN + H T EI+ S G + +L+ +P I+ V
Sbjct: 226 YNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLV 285
Query: 208 EPSESAVLNGGQR 220
+P++ + G +R
Sbjct: 286 QPAQGDSIPGIRR 298
>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
++ V E TP+ + + I K E +P S K R AY+M+ GL
Sbjct: 21 LRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMA-----GLTE 75
Query: 67 PGKTT-LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120
K +I ++GN G+AF +A G +IVMP+ + + +R G E++L
Sbjct: 76 EQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLL 130
>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|B Chain B, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|C Chain C, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
pdb|1VE5|D Chain D, Crystal Structure Of T.Th. Hb8 Threonine Deaminase
Length = 311
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 1 MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAE 60
++D A R + TP++ + R+ K E ++ S K R A S
Sbjct: 4 LQDLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALS------ 57
Query: 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119
K L L+ V+SGN G+A+ A G ++VMP S ++ RA GAE++
Sbjct: 58 -KALALENPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVV 115
>pdb|4D9K|A Chain A, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|D Chain D, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|B Chain B, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
pdb|4D9K|C Chain C, Crystal Structure Of Escherichia Coli Diaminopropionate
Ammonia Lyase In Apo Form
Length = 398
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
K T T GN G G+A+ A G N +I MP + ER + LGAE I+ D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9M|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
pdb|4D9M|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With Aminoacrylate-Plp
Azomethine Reaction Intermediate
Length = 398
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
K T T GN G G+A+ A G N +I MP + ER + LGAE I+ D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9I|A Chain A, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9I|B Chain B, Crystal Structure Of Holo Diaminopropionate Ammonia Lyase
From Escherichia Coli
pdb|4D9N|A Chain A, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
pdb|4D9N|B Chain B, Crystal Structure Of Diaminopropionate Ammonia Lyase From
Escherichia Coli In Complex With D-Serine
Length = 398
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%)
Query: 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
K T T GN G G+A+ A G N +I MP + ER + LGAE I+ D
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTD 165
>pdb|4D9G|A Chain A, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
pdb|4D9G|B Chain B, Crystal Structure Of Selenomethionine Incorporated Holo
Diaminopropionate Ammonia Lyase From Escherichia Coli
Length = 398
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
K T T GN G G+A+ A G N +I P + ER + LGAE I+ D
Sbjct: 112 KXTFATTTDGNHGRGVAWAAQQLGQNAVIYXPKGSAQERVDAILNLGAECIVTD 165
>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase
pdb|3HMK|B Chain B, Crystal Structure Of Serine Racemase
pdb|3L6C|A Chain A, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
pdb|3L6C|B Chain B, X-Ray Crystal Structure Of Rat Serine Racemase In Complex
Wi Malonate A Potent Inhibitor
Length = 339
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 37 KLETMEPCSSVKDRIAYSMIKDAEDKGLIT---PGK-TTLIEVTSGNTGVGLAFIAAARG 92
K E + S K R A + I+ GLI GK ++ +SGN G L + A G
Sbjct: 45 KCELFQKTGSFKIRGALNAIR-----GLIPDTLEGKPKAVVTHSSGNHGQALTYAAKLEG 99
Query: 93 YNLIIVMPSTCSMERRIVLRALGAEIILADSA 124
IV+P T +++ ++A GA I+ ++ +
Sbjct: 100 IPAYIVVPQTAPNCKKLAIQAYGASIVYSEPS 131
>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase
pdb|2D1F|B Chain B, Structure Of Mycobacterium Tuberculosis Threonine Synthase
Length = 360
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
VT L G TP++ N+ I K+E + P S KDR + DA + G+
Sbjct: 32 VTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDA-----LAHGQR 86
Query: 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILAD 122
++ ++GNT A AA G +++P +M + GA+II D
Sbjct: 87 AVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID 139
>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In
Complex Malonate A Potent Inhibitor
Length = 346
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 37 KLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLI 96
K E + S K R A + ++ L K + +SGN G L + A G
Sbjct: 45 KCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTH-SSGNHGQALTYAAKLEGIPAY 103
Query: 97 IVMPSTCSMERRIVLRALGAEIILAD 122
IV+P T +++ ++A GA I+ +
Sbjct: 104 IVVPQTAPDCKKLAIQAYGASIVYCE 129
>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For
Conformational Changes Upon Inhibitor Binding
Length = 346
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 76 TSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
+SGN G L + A G IV+P T +++ ++A GA I+ +
Sbjct: 83 SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCE 129
>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
pdb|3IAU|B Chain B, The Structure Of The Processed Form Of Threonine Deaminase
Isoform 2 From Solanum Lycopersicum
Length = 366
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 37 KLETMEPCSSVKDRIAYSMI----KDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARG 92
K E + S R AY+M+ ++ DKG+IT ++GN G+A
Sbjct: 80 KREDKQRVFSFXLRGAYNMMSNLSREELDKGVIT--------ASAGNHAQGVALAGQRLN 131
Query: 93 YNLIIVMPSTCSMERRIVLRALGAEIIL 120
IVMP+T + +RALG +++L
Sbjct: 132 CVAKIVMPTTTPQIKIDAVRALGGDVVL 159
>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase
pdb|1WTC|A Chain A, Crystal Structure Of S.ponbe Serine Racemase Complex With
Amppcp
pdb|2ZPU|A Chain A, Crystal Structure Of Modified Serine Racemase From
S.Pombe.
pdb|2ZR8|A Chain A, Crystal Structure Of Modified Serine Racemase Complexed
With Serine
Length = 323
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/210 (19%), Positives = 77/210 (36%), Gaps = 12/210 (5%)
Query: 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
+ + TP++ + V VA + K E + + K R A + + + K
Sbjct: 20 IKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNE----AQRKA 75
Query: 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFXXX 130
++ +SGN +A A G I+MP + + G ++I+ D R+
Sbjct: 76 GVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYD---RYKDD 132
Query: 131 XXXXXXXXXXTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISXXXXXXXXXX 190
++ +++P + T E++++ G +DA
Sbjct: 133 REKMAKEISEREGLTIIPPYDHP-HVLAGQGTAAKELFEEV-GPLDALFVCLGGGGLLSG 190
Query: 191 XXRFLKENNPDIKVYGVEPSESAVLNGGQR 220
+ P+ +VYGVEP N GQ+
Sbjct: 191 SALAARHFAPNCEVYGVEPEAG---NDGQQ 217
>pdb|2DQL|A Chain A, Crytal Structure Of The Circadian Clock Associated
Protein Pex From Anabaena
pdb|2DQL|B Chain B, Crytal Structure Of The Circadian Clock Associated
Protein Pex From Anabaena
Length = 115
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 10 DVTELIGNTPMVYLNNVVDGCV------------ARIAAKLETMEPCSSVKDRIAYSMIK 57
D+ + N P YL V C + +LET P + D + YS IK
Sbjct: 5 DIYQFFENPPPTYLCQEVAICYILYVLLQGESYGTELIQQLETEHPTYRLSDTVLYSAIK 64
Query: 58 DAEDKGLIT 66
ED IT
Sbjct: 65 FLEDNRAIT 73
>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
Length = 404
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 41 MEPCSSVKDRIAYSMIKDAED---KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII 97
ME +++R+ ++ IKD E+ G + G ++ V S N G + I A + +L +
Sbjct: 267 MERLRGLRNRL-WNGIKDIEEVYLNGDLEHGAPNILNV-SFNYVEGESLIMALK--DLAV 322
Query: 98 VMPSTC---SMERRIVLRALGAEIILADSALRF 127
S C S+E VLRALG LA S++RF
Sbjct: 323 SSGSACTSASLEPSYVLRALGLNDELAHSSIRF 355
>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
Length = 423
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 41 MEPCSSVKDRIAYSMIKDAED---KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII 97
ME +++R+ ++ IKD E+ G + G ++ V S N G + I A + +L +
Sbjct: 286 MERLRGLRNRL-WNGIKDIEEVYLNGDLEHGAPNILNV-SFNYVEGESLIMALK--DLAV 341
Query: 98 VMPSTC---SMERRIVLRALGAEIILADSALRF 127
S C S+E VLRALG LA S++RF
Sbjct: 342 SSGSACTSASLEPSYVLRALGLNDELAHSSIRF 374
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA 113
+G + PG++ LI SG G IA +RG V + S E+R L+A
Sbjct: 1662 RGRMQPGESVLIHSGSGGVGQAAIAIALSRGCR---VFTTVGSAEKRAYLQA 1710
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 65 ITPGKTTLIEVTSGNTGVGLAFIAA 89
I PG+ +IE++ G +G+GL+ +
Sbjct: 13 IVPGQEMIIEISKGRSGLGLSIVGG 37
>pdb|2GN0|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|C Chain C, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN0|D Chain D, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 1.7 A
Resolution (Triclinic Form With One Complete Subunit
Built In Alternate Conformation)
pdb|2GN1|A Chain A, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN1|B Chain B, Crystal Structure Of Dimeric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium At 2.2a
Resolution (Triclinic Form With One Dimer Of Tdcb In The
Asymmetric Unit)
pdb|2GN2|A Chain A, Crystal Structure Of Tetrameric Biodegradative Threonine
Deaminase (Tdcb) From Salmonella Typhimurium In Complex
With Cmp At 2.5a Resolution (Hexagonal Form)
Length = 342
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 10/123 (8%)
Query: 1 MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAY---SMIK 57
+ED K+ + I T M N + C I K E M+ S R A+ S +
Sbjct: 24 IEDILEAKKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFXIRGAFNKLSSLT 83
Query: 58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117
+AE + ++ ++GN G++ A G + +VMP + AE
Sbjct: 84 EAEKR-------KGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAE 136
Query: 118 IIL 120
++L
Sbjct: 137 VVL 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,871,694
Number of Sequences: 62578
Number of extensions: 296914
Number of successful extensions: 732
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 60
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)