Query 023565
Match_columns 280
No_of_seqs 184 out of 1288
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:00:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023565.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023565hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 1.1E-63 2.4E-68 439.4 30.5 258 8-267 2-261 (300)
2 PLN03013 cysteine synthase 100.0 2.8E-62 6.2E-67 452.7 32.0 270 6-275 112-388 (429)
3 PLN02565 cysteine synthase 100.0 1.8E-61 3.9E-66 438.2 32.1 271 6-276 4-281 (322)
4 PLN00011 cysteine synthase 100.0 1.6E-59 3.5E-64 426.3 33.2 267 1-267 1-267 (323)
5 COG1171 IlvA Threonine dehydra 100.0 8.9E-61 1.9E-65 428.0 23.6 265 4-275 12-296 (347)
6 PLN02556 cysteine synthase/L-3 100.0 8.2E-60 1.8E-64 433.5 30.3 261 7-267 49-309 (368)
7 TIGR01136 cysKM cysteine synth 100.0 2E-58 4.2E-63 415.6 32.3 263 12-275 2-271 (299)
8 PRK11761 cysM cysteine synthas 100.0 3E-58 6.5E-63 413.1 30.3 260 7-275 2-268 (296)
9 TIGR01139 cysK cysteine syntha 100.0 6.4E-58 1.4E-62 412.1 32.2 262 12-275 2-271 (298)
10 TIGR01138 cysM cysteine syntha 100.0 4.3E-57 9.3E-62 404.7 30.9 256 11-275 2-264 (290)
11 PRK10717 cysteine synthase A; 100.0 9.1E-57 2E-61 409.9 32.0 268 7-275 3-290 (330)
12 PLN02356 phosphateglycerate ki 100.0 1.6E-56 3.5E-61 414.2 31.2 268 7-275 43-375 (423)
13 cd01561 CBS_like CBS_like: Thi 100.0 3.8E-56 8.3E-61 399.3 32.1 259 16-275 1-268 (291)
14 PRK08526 threonine dehydratase 100.0 4.4E-57 9.5E-62 420.2 23.9 263 3-274 6-287 (403)
15 KOG1252 Cystathionine beta-syn 100.0 2.6E-57 5.7E-62 397.3 18.6 264 4-267 39-307 (362)
16 PRK08198 threonine dehydratase 100.0 3.6E-56 7.9E-61 416.2 26.1 264 3-275 8-290 (404)
17 PRK12483 threonine dehydratase 100.0 6.9E-56 1.5E-60 421.3 28.2 259 10-276 30-307 (521)
18 TIGR01137 cysta_beta cystathio 100.0 1.8E-55 3.8E-60 417.6 30.2 267 8-276 2-284 (454)
19 PLN02970 serine racemase 100.0 7.8E-56 1.7E-60 403.0 26.2 255 4-267 14-279 (328)
20 PRK06382 threonine dehydratase 100.0 5.6E-56 1.2E-60 414.5 25.8 254 5-267 13-278 (406)
21 PRK07476 eutB threonine dehydr 100.0 1.5E-55 3.3E-60 400.4 26.4 255 4-267 6-274 (322)
22 cd06447 D-Ser-dehyd D-Serine d 100.0 1.8E-55 4E-60 407.2 27.2 259 15-276 50-372 (404)
23 TIGR02079 THD1 threonine dehyd 100.0 1.8E-55 3.9E-60 410.9 26.4 264 4-275 3-288 (409)
24 PLN02550 threonine dehydratase 100.0 2.5E-55 5.4E-60 420.0 27.3 259 10-276 102-379 (591)
25 TIGR02991 ectoine_eutB ectoine 100.0 3.2E-55 7E-60 397.1 26.3 262 3-273 5-287 (317)
26 PRK08639 threonine dehydratase 100.0 2.2E-55 4.8E-60 412.0 24.8 266 4-275 12-299 (420)
27 PRK06110 hypothetical protein; 100.0 6.9E-55 1.5E-59 396.1 26.1 263 3-274 7-288 (322)
28 PRK07048 serine/threonine dehy 100.0 5.1E-55 1.1E-59 396.9 24.9 264 3-275 10-292 (321)
29 PRK07334 threonine dehydratase 100.0 3.9E-55 8.5E-60 408.6 24.5 264 3-275 9-289 (403)
30 TIGR01124 ilvA_2Cterm threonin 100.0 1.1E-54 2.4E-59 413.1 27.8 259 9-275 9-286 (499)
31 PRK08638 threonine dehydratase 100.0 7.7E-55 1.7E-59 396.6 25.4 254 4-267 14-280 (333)
32 KOG1250 Threonine/serine dehyd 100.0 4.4E-55 9.4E-60 389.1 22.4 262 6-275 55-335 (457)
33 PRK06815 hypothetical protein; 100.0 1.8E-54 4E-59 392.5 24.8 264 3-275 6-289 (317)
34 TIGR01127 ilvA_1Cterm threonin 100.0 1.9E-54 4.1E-59 401.7 25.2 249 18-275 1-268 (380)
35 cd06448 L-Ser-dehyd Serine deh 100.0 4.4E-54 9.6E-59 389.5 26.8 254 17-274 1-276 (316)
36 PRK02991 D-serine dehydratase; 100.0 4.7E-54 1E-58 402.2 27.7 257 15-274 73-393 (441)
37 PRK08813 threonine dehydratase 100.0 4.4E-54 9.5E-59 391.4 26.3 255 4-277 26-298 (349)
38 PRK06608 threonine dehydratase 100.0 6.1E-54 1.3E-58 391.4 26.3 264 3-275 9-291 (338)
39 TIGR02035 D_Ser_am_lyase D-ser 100.0 1.3E-53 2.8E-58 397.8 29.0 251 14-267 67-374 (431)
40 PRK09224 threonine dehydratase 100.0 1.1E-53 2.3E-58 407.7 28.0 260 9-276 12-290 (504)
41 cd01562 Thr-dehyd Threonine de 100.0 1.3E-53 2.8E-58 385.0 25.2 265 2-275 2-285 (304)
42 PRK08246 threonine dehydratase 100.0 3.3E-53 7.2E-58 382.9 25.7 250 3-267 9-270 (310)
43 PRK06352 threonine synthase; V 100.0 2.1E-53 4.6E-58 390.0 24.3 258 9-276 20-298 (351)
44 KOG1251 Serine racemase [Signa 100.0 6.3E-54 1.4E-58 360.4 18.4 263 3-274 11-292 (323)
45 PRK06721 threonine synthase; R 100.0 8.5E-52 1.8E-56 379.7 28.1 259 8-276 19-298 (352)
46 cd01563 Thr-synth_1 Threonine 100.0 1.3E-51 2.9E-56 375.1 27.0 257 9-275 14-301 (324)
47 PRK07591 threonine synthase; V 100.0 1.4E-51 3E-56 386.0 26.9 259 10-276 82-371 (421)
48 PRK07409 threonine synthase; V 100.0 2.4E-51 5.3E-56 377.2 27.5 255 10-275 24-301 (353)
49 PRK08197 threonine synthase; V 100.0 2.1E-51 4.6E-56 382.5 26.9 256 11-275 73-360 (394)
50 PRK06381 threonine synthase; V 100.0 3.5E-51 7.6E-56 371.6 27.5 258 10-276 8-301 (319)
51 PRK08206 diaminopropionate amm 100.0 7.4E-51 1.6E-55 378.5 25.6 267 5-275 30-354 (399)
52 PRK08329 threonine synthase; V 100.0 3.5E-50 7.5E-55 368.4 27.8 248 11-276 58-324 (347)
53 PRK06450 threonine synthase; V 100.0 3.6E-50 7.8E-55 366.2 27.6 243 10-275 51-321 (338)
54 PRK06260 threonine synthase; V 100.0 5.3E-50 1.2E-54 373.4 26.8 256 10-275 60-347 (397)
55 PLN02569 threonine synthase 100.0 5.3E-49 1.1E-53 372.0 27.9 258 11-275 127-418 (484)
56 PRK05638 threonine synthase; V 100.0 1.1E-48 2.5E-53 368.9 27.6 253 11-276 60-336 (442)
57 TIGR01747 diampropi_NH3ly diam 100.0 7.2E-49 1.6E-53 361.9 24.3 265 5-274 11-334 (376)
58 cd00640 Trp-synth-beta_II Tryp 100.0 1.1E-47 2.5E-52 336.1 28.6 219 18-275 1-227 (244)
59 TIGR00260 thrC threonine synth 100.0 5.3E-48 1.1E-52 352.1 24.3 256 9-276 15-304 (328)
60 TIGR03528 2_3_DAP_am_ly diamin 100.0 9.3E-48 2E-52 356.7 25.7 262 7-272 32-351 (396)
61 PRK13028 tryptophan synthase s 100.0 1E-46 2.2E-51 348.7 29.5 260 11-275 55-368 (402)
62 PRK04346 tryptophan synthase s 100.0 1.5E-46 3.2E-51 347.2 27.6 260 11-275 51-364 (397)
63 TIGR00263 trpB tryptophan synt 100.0 1.4E-46 3.1E-51 348.5 27.6 262 9-275 41-356 (385)
64 KOG1481 Cysteine synthase [Ami 100.0 1.8E-47 3.9E-52 326.8 18.6 258 9-267 41-326 (391)
65 cd06446 Trp-synth_B Tryptophan 100.0 2.4E-46 5.1E-51 345.2 27.5 263 8-276 24-341 (365)
66 TIGR01415 trpB_rel pyridoxal-p 100.0 4.3E-46 9.3E-51 347.1 29.4 260 7-275 58-384 (419)
67 PLN02618 tryptophan synthase, 100.0 7.8E-46 1.7E-50 342.9 28.4 262 7-275 55-377 (410)
68 PRK12391 tryptophan synthase s 100.0 3E-45 6.6E-50 341.9 29.4 258 12-275 72-393 (427)
69 TIGR01275 ACC_deam_rel pyridox 100.0 3.1E-46 6.7E-51 338.1 20.7 255 14-275 4-282 (311)
70 PRK12390 1-aminocyclopropane-1 100.0 3.2E-46 6.9E-51 341.4 21.0 267 5-276 3-306 (337)
71 PRK03910 D-cysteine desulfhydr 100.0 2.1E-46 4.5E-51 341.8 19.5 265 5-275 3-299 (331)
72 PF00291 PALP: Pyridoxal-phosp 100.0 3.8E-46 8.1E-51 336.1 19.7 253 11-275 1-286 (306)
73 TIGR03844 cysteate_syn cysteat 100.0 2.3E-45 5E-50 340.7 23.4 255 12-275 57-359 (398)
74 PRK13802 bifunctional indole-3 100.0 1.2E-44 2.7E-49 351.8 29.4 260 11-275 319-640 (695)
75 cd06449 ACCD Aminocyclopropane 100.0 1.3E-45 2.7E-50 333.5 20.7 252 18-275 1-288 (307)
76 TIGR01274 ACC_deam 1-aminocycl 100.0 1.7E-45 3.6E-50 336.5 21.8 265 5-275 2-304 (337)
77 PRK14045 1-aminocyclopropane-1 100.0 2.2E-44 4.7E-49 328.1 19.8 263 5-275 9-297 (329)
78 PRK13803 bifunctional phosphor 100.0 2.3E-43 5E-48 343.0 27.5 260 11-275 264-576 (610)
79 COG0498 ThrC Threonine synthas 100.0 6.5E-37 1.4E-41 282.1 22.0 257 10-276 69-354 (411)
80 COG2515 Acd 1-aminocyclopropan 100.0 2E-33 4.3E-38 244.1 16.4 265 4-274 2-292 (323)
81 COG0133 TrpB Tryptophan syntha 100.0 1.8E-30 3.9E-35 226.2 21.0 252 11-267 49-346 (396)
82 COG1350 Predicted alternative 100.0 1.3E-27 2.9E-32 208.8 18.6 255 7-267 68-379 (432)
83 PRK09225 threonine synthase; V 99.9 5.3E-26 1.2E-30 214.0 23.8 242 17-275 88-396 (462)
84 cd01560 Thr-synth_2 Threonine 99.9 3.1E-25 6.7E-30 208.9 24.0 245 17-276 87-400 (460)
85 KOG1395 Tryptophan synthase be 99.9 1.1E-25 2.3E-30 198.4 16.8 253 10-267 114-414 (477)
86 COG3048 DsdA D-serine dehydrat 99.9 8E-24 1.7E-28 183.7 17.2 252 13-267 74-382 (443)
87 PF03808 Glyco_tran_WecB: Glyc 89.9 3.1 6.7E-05 34.2 9.1 102 81-188 13-115 (172)
88 cd08230 glucose_DH Glucose deh 86.7 5.6 0.00012 36.3 9.6 53 66-119 171-223 (355)
89 TIGR03201 dearomat_had 6-hydro 86.0 12 0.00025 34.1 11.3 58 60-121 159-216 (349)
90 TIGR03366 HpnZ_proposed putati 84.8 8.2 0.00018 33.9 9.4 52 65-119 118-169 (280)
91 PF00107 ADH_zinc_N: Zinc-bind 84.6 6.9 0.00015 29.8 7.9 43 166-211 49-92 (130)
92 PRK09424 pntA NAD(P) transhydr 84.3 25 0.00055 34.2 13.0 52 67-122 164-215 (509)
93 cd08294 leukotriene_B4_DH_like 84.1 18 0.00038 32.2 11.4 59 61-122 137-195 (329)
94 PRK03562 glutathione-regulated 83.9 22 0.00048 35.5 12.9 52 70-124 401-452 (621)
95 cd06533 Glyco_transf_WecG_TagA 83.5 16 0.00034 30.0 9.9 119 81-208 11-132 (171)
96 TIGR00670 asp_carb_tr aspartat 83.4 6.8 0.00015 35.4 8.3 52 71-122 152-208 (301)
97 TIGR02819 fdhA_non_GSH formald 83.1 20 0.00043 33.5 11.6 56 61-119 179-234 (393)
98 PF01041 DegT_DnrJ_EryC1: DegT 81.7 3.8 8.2E-05 37.8 6.1 55 70-124 41-95 (363)
99 PF05368 NmrA: NmrA-like famil 81.6 8.2 0.00018 32.8 7.9 50 72-122 2-51 (233)
100 TIGR01064 pyruv_kin pyruvate k 81.5 35 0.00075 33.0 12.7 124 83-212 261-407 (473)
101 COG0604 Qor NADPH:quinone redu 80.6 20 0.00043 32.7 10.4 57 62-121 137-193 (326)
102 cd01075 NAD_bind_Leu_Phe_Val_D 80.6 21 0.00045 30.1 9.8 49 49-97 6-56 (200)
103 PRK03659 glutathione-regulated 80.6 35 0.00076 33.9 12.8 50 71-123 402-451 (601)
104 TIGR03451 mycoS_dep_FDH mycoth 80.0 23 0.00049 32.3 10.7 57 61-120 170-226 (358)
105 PF00070 Pyr_redox: Pyridine n 79.8 17 0.00038 25.3 7.8 49 72-120 2-59 (80)
106 COG1063 Tdh Threonine dehydrog 79.7 50 0.0011 30.3 14.8 50 71-122 171-221 (350)
107 PF01210 NAD_Gly3P_dh_N: NAD-d 79.3 3.7 8.1E-05 33.1 4.7 39 72-113 2-40 (157)
108 PF04127 DFP: DNA / pantothena 79.3 9.4 0.0002 31.9 7.2 62 71-141 22-83 (185)
109 PF00107 ADH_zinc_N: Zinc-bind 78.7 11 0.00024 28.6 7.1 43 81-126 3-45 (130)
110 TIGR02825 B4_12hDH leukotriene 78.2 32 0.00069 30.7 11.0 58 61-121 132-189 (325)
111 cd08281 liver_ADH_like1 Zinc-d 78.0 30 0.00064 31.8 10.9 58 61-121 185-242 (371)
112 COG0800 Eda 2-keto-3-deoxy-6-p 77.3 45 0.00098 28.5 11.7 91 52-154 27-117 (211)
113 TIGR02822 adh_fam_2 zinc-bindi 77.0 13 0.00028 33.7 8.0 56 61-120 159-214 (329)
114 cd08233 butanediol_DH_like (2R 77.0 28 0.00061 31.4 10.4 58 61-121 166-223 (351)
115 cd08256 Zn_ADH2 Alcohol dehydr 76.8 42 0.00092 30.3 11.5 57 61-120 168-224 (350)
116 PRK09880 L-idonate 5-dehydroge 76.5 21 0.00045 32.4 9.3 54 65-121 167-220 (343)
117 PF13561 adh_short_C2: Enoyl-( 76.3 14 0.00031 31.5 7.8 48 76-123 4-53 (241)
118 cd08295 double_bond_reductase_ 76.3 42 0.00092 30.1 11.3 57 61-120 145-202 (338)
119 PF02826 2-Hacid_dh_C: D-isome 75.8 14 0.0003 30.4 7.2 115 70-209 37-153 (178)
120 KOG1201 Hydroxysteroid 17-beta 75.0 40 0.00087 30.4 10.2 74 68-142 38-113 (300)
121 PRK15481 transcriptional regul 74.5 29 0.00062 32.7 9.9 81 71-154 143-225 (431)
122 TIGR00696 wecB_tagA_cpsF bacte 74.2 35 0.00075 28.3 9.2 97 81-185 13-111 (177)
123 cd08274 MDR9 Medium chain dehy 74.2 37 0.0008 30.4 10.3 57 60-120 170-226 (350)
124 COG2242 CobL Precorrin-6B meth 73.8 30 0.00065 29.0 8.6 156 33-213 7-165 (187)
125 PLN03154 putative allyl alcoho 73.5 57 0.0012 29.7 11.4 57 62-121 153-210 (348)
126 cd08293 PTGR2 Prostaglandin re 73.4 60 0.0013 29.1 11.5 58 62-122 147-208 (345)
127 PLN02740 Alcohol dehydrogenase 73.1 44 0.00096 30.8 10.7 57 61-120 192-248 (381)
128 KOG0025 Zn2+-binding dehydroge 73.0 36 0.00077 30.8 9.2 86 33-122 124-216 (354)
129 PRK10669 putative cation:proto 73.0 46 0.001 32.6 11.3 52 70-124 418-469 (558)
130 PRK14030 glutamate dehydrogena 72.6 24 0.00053 33.7 8.8 52 49-100 208-259 (445)
131 KOG0024 Sorbitol dehydrogenase 72.0 48 0.001 30.4 10.0 64 57-123 159-222 (354)
132 PF00185 OTCace: Aspartate/orn 71.8 12 0.00026 30.3 5.8 51 72-122 5-65 (158)
133 PRK10309 galactitol-1-phosphat 71.6 27 0.00059 31.6 8.8 57 61-120 154-210 (347)
134 PF09837 DUF2064: Uncharacteri 70.3 48 0.001 25.6 10.4 98 84-187 2-100 (122)
135 cd08289 MDR_yhfp_like Yhfp put 69.7 41 0.00089 29.8 9.4 49 68-119 147-195 (326)
136 COG1064 AdhP Zn-dependent alco 69.6 37 0.0008 31.3 9.0 60 59-122 158-217 (339)
137 cd08287 FDH_like_ADH3 formalde 69.6 76 0.0016 28.4 11.3 53 62-117 163-215 (345)
138 cd00401 AdoHcyase S-adenosyl-L 69.5 22 0.00047 33.7 7.7 53 63-119 197-249 (413)
139 PRK08862 short chain dehydroge 69.4 70 0.0015 27.1 11.5 53 69-121 6-59 (227)
140 PRK05396 tdh L-threonine 3-deh 69.2 40 0.00086 30.3 9.3 52 66-120 162-213 (341)
141 cd08277 liver_alcohol_DH_like 69.1 36 0.00077 31.1 9.1 57 61-120 178-234 (365)
142 COG0623 FabI Enoyl-[acyl-carri 69.0 32 0.00068 30.1 7.8 69 108-183 25-93 (259)
143 cd08296 CAD_like Cinnamyl alco 69.0 63 0.0014 28.9 10.5 53 64-120 160-212 (333)
144 cd08292 ETR_like_2 2-enoyl thi 68.9 43 0.00094 29.5 9.4 54 62-118 134-187 (324)
145 cd08285 NADP_ADH NADP(H)-depen 68.8 59 0.0013 29.3 10.4 57 60-119 159-215 (351)
146 cd08301 alcohol_DH_plants Plan 68.7 42 0.00091 30.6 9.5 57 61-120 181-237 (369)
147 TIGR02818 adh_III_F_hyde S-(hy 68.5 43 0.00094 30.7 9.5 57 61-120 179-235 (368)
148 cd08239 THR_DH_like L-threonin 68.5 65 0.0014 28.8 10.6 58 61-121 157-214 (339)
149 PRK08340 glucose-1-dehydrogena 68.5 76 0.0016 27.2 10.7 29 71-99 3-31 (259)
150 cd08300 alcohol_DH_class_III c 68.4 33 0.00072 31.4 8.7 57 61-120 180-236 (368)
151 PRK06348 aspartate aminotransf 68.2 99 0.0021 28.4 12.3 51 71-122 91-141 (384)
152 PRK12771 putative glutamate sy 68.2 15 0.00032 36.2 6.6 55 66-121 135-207 (564)
153 COG1751 Uncharacterized conser 68.0 58 0.0012 26.5 8.6 75 43-122 7-90 (186)
154 PRK02610 histidinol-phosphate 68.0 38 0.00082 31.2 9.0 53 71-123 93-145 (374)
155 cd08297 CAD3 Cinnamyl alcohol 68.0 43 0.00093 30.0 9.3 53 64-119 162-214 (341)
156 PTZ00079 NADP-specific glutama 67.7 37 0.0008 32.6 8.8 53 49-101 217-269 (454)
157 cd08242 MDR_like Medium chain 67.3 33 0.00072 30.4 8.3 55 61-119 149-203 (319)
158 TIGR03540 DapC_direct LL-diami 67.1 77 0.0017 29.1 10.9 51 72-123 94-144 (383)
159 PRK08159 enoyl-(acyl carrier p 67.0 72 0.0016 27.8 10.3 29 70-98 12-42 (272)
160 PRK15454 ethanol dehydrogenase 66.4 36 0.00077 32.0 8.5 90 91-188 24-119 (395)
161 TIGR02853 spore_dpaA dipicolin 66.0 52 0.0011 29.4 9.2 66 49-117 131-196 (287)
162 PRK13656 trans-2-enoyl-CoA red 65.9 1.2E+02 0.0026 28.6 11.7 57 40-99 14-73 (398)
163 TIGR01751 crot-CoA-red crotony 65.7 47 0.001 30.8 9.2 125 63-208 185-310 (398)
164 cd08288 MDR_yhdh Yhdh putative 65.7 52 0.0011 29.1 9.2 51 67-120 146-196 (324)
165 PF00106 adh_short: short chai 65.6 62 0.0013 25.3 8.9 53 71-123 3-59 (167)
166 PRK12823 benD 1,6-dihydroxycyc 65.6 52 0.0011 28.1 9.0 53 69-121 9-61 (260)
167 PF07279 DUF1442: Protein of u 65.5 42 0.00091 28.8 7.9 59 55-116 31-94 (218)
168 PRK12743 oxidoreductase; Provi 65.3 45 0.00098 28.5 8.5 53 70-122 4-58 (256)
169 TIGR00692 tdh L-threonine 3-de 65.3 57 0.0012 29.2 9.5 52 65-119 159-210 (340)
170 cd08185 Fe-ADH1 Iron-containin 65.2 50 0.0011 30.7 9.3 95 94-195 4-102 (380)
171 cd08291 ETR_like_1 2-enoyl thi 65.0 53 0.0012 29.2 9.2 51 69-122 144-195 (324)
172 PRK09147 succinyldiaminopimela 64.9 1.2E+02 0.0025 28.1 12.9 79 43-123 64-146 (396)
173 COG2130 Putative NADP-dependen 64.7 67 0.0014 29.3 9.3 59 61-122 144-203 (340)
174 PRK08703 short chain dehydroge 64.3 86 0.0019 26.3 10.5 31 69-99 7-37 (239)
175 KOG2862 Alanine-glyoxylate ami 64.2 1.1E+02 0.0023 28.1 10.4 85 70-154 69-155 (385)
176 PRK07550 hypothetical protein; 64.1 1.1E+02 0.0024 28.1 11.4 76 44-123 67-143 (386)
177 cd05211 NAD_bind_Glu_Leu_Phe_V 64.0 39 0.00085 28.9 7.7 52 50-101 4-55 (217)
178 PRK12481 2-deoxy-D-gluconate 3 63.9 71 0.0015 27.3 9.5 52 69-121 9-60 (251)
179 TIGR01316 gltA glutamate synth 63.6 33 0.00072 32.6 7.9 52 70-121 273-329 (449)
180 cd08269 Zn_ADH9 Alcohol dehydr 63.3 1E+02 0.0022 26.9 11.3 53 61-117 123-176 (312)
181 PRK08993 2-deoxy-D-gluconate 3 63.2 85 0.0018 26.8 9.9 53 69-122 11-63 (253)
182 PLN02827 Alcohol dehydrogenase 63.0 67 0.0014 29.7 9.6 56 62-120 188-243 (378)
183 PTZ00354 alcohol dehydrogenase 62.9 61 0.0013 28.6 9.2 56 63-121 136-191 (334)
184 PRK15408 autoinducer 2-binding 62.6 1.2E+02 0.0027 27.5 18.3 147 53-209 70-243 (336)
185 cd08246 crotonyl_coA_red croto 62.4 34 0.00074 31.5 7.6 54 64-120 190-243 (393)
186 PRK06935 2-deoxy-D-gluconate 3 62.1 77 0.0017 27.1 9.4 54 69-122 16-69 (258)
187 PRK08628 short chain dehydroge 62.0 80 0.0017 26.9 9.5 54 69-122 8-61 (258)
188 PRK08589 short chain dehydroge 61.4 63 0.0014 28.0 8.8 53 69-121 7-59 (272)
189 PRK06702 O-acetylhomoserine am 61.4 1E+02 0.0022 29.4 10.6 78 72-154 79-160 (432)
190 PRK10083 putative oxidoreducta 61.2 72 0.0016 28.5 9.4 59 60-121 153-212 (339)
191 PLN00175 aminotransferase fami 61.2 1.2E+02 0.0027 28.3 11.2 51 72-123 118-168 (413)
192 PRK13376 pyrB bifunctional asp 60.6 36 0.00079 33.3 7.5 52 71-122 176-233 (525)
193 cd08231 MDR_TM0436_like Hypoth 60.4 1.3E+02 0.0028 27.1 12.8 53 62-118 172-225 (361)
194 KOG0023 Alcohol dehydrogenase, 60.3 57 0.0012 29.9 8.2 61 59-123 174-234 (360)
195 cd06324 PBP1_ABC_sugar_binding 60.3 1.2E+02 0.0026 26.7 18.6 46 163-211 192-241 (305)
196 TIGR00561 pntA NAD(P) transhyd 60.1 42 0.0009 32.8 7.8 50 71-123 166-215 (511)
197 PRK08226 short chain dehydroge 60.0 76 0.0016 27.1 9.0 53 69-121 7-59 (263)
198 PLN02527 aspartate carbamoyltr 59.8 43 0.00093 30.3 7.5 52 71-122 153-210 (306)
199 PRK09860 putative alcohol dehy 59.7 68 0.0015 29.9 9.1 95 93-195 8-107 (383)
200 PRK12809 putative oxidoreducta 59.6 34 0.00073 34.3 7.4 77 46-122 280-381 (639)
201 PRK11891 aspartate carbamoyltr 59.5 43 0.00092 31.9 7.6 52 71-122 243-300 (429)
202 PRK08335 translation initiatio 59.5 74 0.0016 28.4 8.8 58 65-123 107-168 (275)
203 PRK10754 quinone oxidoreductas 59.4 1.3E+02 0.0027 26.6 11.3 55 62-119 135-189 (327)
204 PRK05826 pyruvate kinase; Prov 59.3 1.7E+02 0.0037 28.3 11.7 125 83-212 263-407 (465)
205 PRK08306 dipicolinate synthase 59.3 98 0.0021 27.8 9.7 46 71-119 154-199 (296)
206 cd05313 NAD_bind_2_Glu_DH NAD( 59.3 53 0.0012 28.9 7.8 53 49-101 18-70 (254)
207 PRK08535 translation initiatio 59.3 1.4E+02 0.003 27.1 11.1 58 65-123 118-179 (310)
208 PRK12779 putative bifunctional 59.2 46 0.001 35.1 8.5 97 68-185 306-403 (944)
209 PRK08912 hypothetical protein; 59.1 1.5E+02 0.0032 27.3 13.0 78 43-123 62-140 (387)
210 TIGR03538 DapC_gpp succinyldia 59.0 1.5E+02 0.0032 27.3 12.8 79 43-123 63-145 (393)
211 cd08258 Zn_ADH4 Alcohol dehydr 59.0 70 0.0015 28.3 8.8 53 62-116 159-211 (306)
212 TIGR03537 DapC succinyldiamino 58.9 1.4E+02 0.003 27.0 12.3 78 43-123 35-116 (350)
213 PRK11658 UDP-4-amino-4-deoxy-L 58.8 85 0.0018 29.0 9.6 52 72-123 51-102 (379)
214 PRK08192 aspartate carbamoyltr 58.8 47 0.001 30.6 7.7 52 71-122 161-218 (338)
215 PF08659 KR: KR domain; Inter 58.5 84 0.0018 25.6 8.6 53 71-123 3-60 (181)
216 TIGR01470 cysG_Nterm siroheme 58.4 74 0.0016 26.9 8.3 33 71-103 11-43 (205)
217 cd08298 CAD2 Cinnamyl alcohol 58.4 71 0.0015 28.3 8.8 54 61-118 161-214 (329)
218 cd08240 6_hydroxyhexanoate_dh_ 58.3 84 0.0018 28.2 9.3 49 67-118 175-223 (350)
219 PRK08636 aspartate aminotransf 58.3 1.6E+02 0.0034 27.3 11.5 77 43-122 70-147 (403)
220 PRK13394 3-hydroxybutyrate deh 58.2 99 0.0022 26.2 9.4 54 69-122 8-62 (262)
221 cd08244 MDR_enoyl_red Possible 58.1 1.2E+02 0.0025 26.7 10.1 55 61-118 136-190 (324)
222 PF02887 PK_C: Pyruvate kinase 58.1 35 0.00075 25.9 5.8 84 163-267 7-90 (117)
223 PRK14031 glutamate dehydrogena 58.0 82 0.0018 30.2 9.3 53 49-101 208-260 (444)
224 TIGR01832 kduD 2-deoxy-D-gluco 57.9 1E+02 0.0023 25.9 9.4 53 69-122 6-58 (248)
225 PRK15438 erythronate-4-phospha 57.9 1E+02 0.0022 28.8 9.8 129 44-197 88-223 (378)
226 PF02254 TrkA_N: TrkA-N domain 57.8 74 0.0016 23.5 11.2 49 72-123 1-49 (116)
227 PRK07109 short chain dehydroge 57.8 74 0.0016 28.8 8.8 54 69-122 9-63 (334)
228 PRK13243 glyoxylate reductase; 57.6 83 0.0018 28.8 9.1 97 70-190 151-247 (333)
229 cd08284 FDH_like_2 Glutathione 57.4 1.4E+02 0.0031 26.6 10.9 53 63-118 163-215 (344)
230 cd08243 quinone_oxidoreductase 57.2 1.3E+02 0.0028 26.1 11.1 55 63-120 138-192 (320)
231 PRK10624 L-1,2-propanediol oxi 56.9 67 0.0015 29.9 8.5 90 92-188 6-100 (382)
232 PRK11706 TDP-4-oxo-6-deoxy-D-g 56.8 39 0.00085 31.2 6.9 53 71-123 48-100 (375)
233 cd08278 benzyl_alcohol_DH Benz 56.7 1E+02 0.0023 28.0 9.7 56 62-120 181-236 (365)
234 KOG3857 Alcohol dehydrogenase, 56.7 40 0.00086 31.2 6.5 80 103-187 57-139 (465)
235 PRK05993 short chain dehydroge 56.5 1.3E+02 0.0029 26.0 10.7 52 70-124 6-57 (277)
236 cd05281 TDH Threonine dehydrog 56.4 83 0.0018 28.2 8.9 51 66-119 162-212 (341)
237 PRK12831 putative oxidoreducta 56.2 53 0.0012 31.4 7.9 52 70-121 282-338 (464)
238 PRK06139 short chain dehydroge 56.2 72 0.0016 29.0 8.5 53 69-121 8-61 (330)
239 PRK07681 aspartate aminotransf 56.1 1.7E+02 0.0037 27.0 11.2 52 71-123 95-146 (399)
240 cd08191 HHD 6-hydroxyhexanoate 55.9 1.2E+02 0.0026 28.3 10.0 94 97-195 4-98 (386)
241 cd08176 LPO Lactadehyde:propan 55.9 74 0.0016 29.5 8.6 96 92-195 4-104 (377)
242 COG0159 TrpA Tryptophan syntha 55.9 1.2E+02 0.0026 26.9 9.4 35 81-115 136-170 (265)
243 cd08187 BDH Butanol dehydrogen 55.8 93 0.002 28.9 9.3 111 93-210 6-137 (382)
244 PRK08063 enoyl-(acyl carrier p 55.8 1.2E+02 0.0027 25.4 9.7 54 69-122 5-60 (250)
245 PRK07366 succinyldiaminopimela 55.7 1.7E+02 0.0036 26.9 12.3 110 43-155 67-179 (388)
246 PF00091 Tubulin: Tubulin/FtsZ 55.5 49 0.0011 28.1 6.8 100 151-258 90-204 (216)
247 PRK14807 histidinol-phosphate 55.3 79 0.0017 28.7 8.6 52 72-124 79-130 (351)
248 COG1454 EutG Alcohol dehydroge 55.3 1.2E+02 0.0026 28.4 9.7 97 93-196 6-106 (377)
249 PRK12937 short chain dehydroge 55.3 1.2E+02 0.0027 25.3 9.6 54 69-122 6-61 (245)
250 PLN02702 L-idonate 5-dehydroge 55.3 85 0.0018 28.5 8.9 57 61-120 175-231 (364)
251 COG0078 ArgF Ornithine carbamo 55.2 77 0.0017 28.7 8.1 51 72-122 156-213 (310)
252 KOG1210 Predicted 3-ketosphing 54.8 1.3E+02 0.0028 27.5 9.4 31 72-102 37-67 (331)
253 PLN02178 cinnamyl-alcohol dehy 54.8 42 0.00091 31.0 6.8 52 66-120 177-228 (375)
254 PF04122 CW_binding_2: Putativ 54.7 77 0.0017 22.7 9.9 77 44-125 4-83 (92)
255 PRK06182 short chain dehydroge 54.6 1.4E+02 0.003 25.7 10.9 52 70-124 5-56 (273)
256 COG1587 HemD Uroporphyrinogen- 54.4 1.4E+02 0.0031 25.7 10.3 120 81-211 86-214 (248)
257 PRK07792 fabG 3-ketoacyl-(acyl 54.4 1.1E+02 0.0024 27.2 9.3 54 69-122 13-68 (306)
258 PRK04870 histidinol-phosphate 54.4 87 0.0019 28.4 8.8 52 72-124 84-135 (356)
259 TIGR02824 quinone_pig3 putativ 54.3 1.5E+02 0.0031 25.8 11.1 56 61-119 133-188 (325)
260 cd07766 DHQ_Fe-ADH Dehydroquin 54.3 1.7E+02 0.0036 26.4 11.4 35 174-210 78-113 (332)
261 cd05282 ETR_like 2-enoyl thioe 54.2 1.2E+02 0.0026 26.6 9.5 53 62-117 133-185 (323)
262 cd08261 Zn_ADH7 Alcohol dehydr 54.1 1.6E+02 0.0035 26.2 11.0 53 61-117 153-205 (337)
263 cd08189 Fe-ADH5 Iron-containin 54.0 1.8E+02 0.004 26.8 11.4 88 94-188 4-96 (374)
264 TIGR02379 ECA_wecE TDP-4-keto- 54.0 1E+02 0.0022 28.6 9.2 54 71-124 48-101 (376)
265 cd05279 Zn_ADH1 Liver alcohol 53.9 1.6E+02 0.0035 26.8 10.5 54 61-117 177-230 (365)
266 PRK03692 putative UDP-N-acetyl 53.8 1.2E+02 0.0027 26.4 9.1 93 81-185 69-168 (243)
267 cd08267 MDR1 Medium chain dehy 53.8 1E+02 0.0022 26.8 9.0 51 63-117 139-189 (319)
268 COG0399 WecE Predicted pyridox 53.7 98 0.0021 28.9 8.9 55 70-124 50-104 (374)
269 PRK09257 aromatic amino acid a 53.7 1.4E+02 0.0031 27.5 10.2 79 42-122 67-148 (396)
270 PRK01688 histidinol-phosphate 53.7 56 0.0012 29.8 7.4 51 72-123 77-128 (351)
271 TIGR03552 F420_cofC 2-phospho- 53.5 1.2E+02 0.0027 24.7 11.3 70 111-186 61-130 (195)
272 TIGR00511 ribulose_e2b2 ribose 53.4 1.7E+02 0.0037 26.3 11.1 58 65-123 113-174 (301)
273 PRK13982 bifunctional SbtC-lik 53.2 21 0.00046 34.4 4.5 43 75-123 279-321 (475)
274 PRK00257 erythronate-4-phospha 53.1 1.4E+02 0.0029 28.1 9.8 129 44-197 88-223 (381)
275 PRK06836 aspartate aminotransf 52.9 1.8E+02 0.0039 26.8 10.8 51 72-123 99-149 (394)
276 cd08245 CAD Cinnamyl alcohol d 52.9 1.1E+02 0.0025 27.0 9.2 55 63-121 158-212 (330)
277 PRK07392 threonine-phosphate d 52.9 63 0.0014 29.4 7.6 51 71-123 76-126 (360)
278 PF01262 AlaDh_PNT_C: Alanine 52.8 63 0.0014 26.1 6.8 50 71-123 22-71 (168)
279 cd08299 alcohol_DH_class_I_II_ 52.8 87 0.0019 28.8 8.5 54 61-117 184-237 (373)
280 cd08550 GlyDH-like Glycerol_de 52.5 84 0.0018 28.8 8.3 104 97-210 4-110 (349)
281 PRK12935 acetoacetyl-CoA reduc 52.5 1.2E+02 0.0027 25.4 9.0 55 69-123 7-63 (247)
282 PRK09422 ethanol-active dehydr 52.4 1.7E+02 0.0036 26.0 10.2 57 61-121 156-213 (338)
283 PRK05786 fabG 3-ketoacyl-(acyl 52.4 1.2E+02 0.0025 25.4 8.7 33 69-101 6-38 (238)
284 COG1167 ARO8 Transcriptional r 52.3 94 0.002 29.7 8.9 96 71-170 157-258 (459)
285 cd08250 Mgc45594_like Mgc45594 52.3 1.7E+02 0.0036 25.8 11.2 53 63-118 135-187 (329)
286 PRK06114 short chain dehydroge 52.2 1.5E+02 0.0032 25.2 10.0 54 69-122 9-64 (254)
287 cd08282 PFDH_like Pseudomonas 52.2 1.1E+02 0.0025 27.9 9.2 55 61-118 170-224 (375)
288 PRK08261 fabG 3-ketoacyl-(acyl 51.8 1.9E+02 0.004 27.3 10.8 57 68-124 210-266 (450)
289 PRK07097 gluconate 5-dehydroge 51.7 1.2E+02 0.0025 26.1 8.8 54 69-122 11-65 (265)
290 PRK05854 short chain dehydroge 51.5 1.8E+02 0.0039 26.0 10.5 32 69-100 15-46 (313)
291 PRK08277 D-mannonate oxidoredu 51.4 1.3E+02 0.0029 25.9 9.2 54 69-122 11-65 (278)
292 PF12000 Glyco_trans_4_3: Gkyc 51.4 35 0.00076 28.2 5.0 43 161-209 54-96 (171)
293 PLN02586 probable cinnamyl alc 51.0 83 0.0018 28.8 8.1 55 63-120 179-233 (360)
294 cd08181 PPD-like 1,3-propanedi 50.9 1.3E+02 0.0028 27.7 9.3 88 94-188 4-96 (357)
295 cd05285 sorbitol_DH Sorbitol d 50.9 1.5E+02 0.0033 26.5 9.7 58 60-120 155-212 (343)
296 PRK05557 fabG 3-ketoacyl-(acyl 50.8 1.5E+02 0.0031 24.7 9.6 53 70-122 7-61 (248)
297 PRK08068 transaminase; Reviewe 50.6 2E+02 0.0043 26.4 10.7 77 44-123 70-147 (389)
298 PRK08643 acetoin reductase; Va 50.4 1.6E+02 0.0034 25.0 9.4 53 70-122 4-57 (256)
299 cd05280 MDR_yhdh_yhfp Yhdh and 50.4 1.5E+02 0.0033 25.9 9.5 48 69-119 148-195 (325)
300 PRK07523 gluconate 5-dehydroge 50.4 1.3E+02 0.0028 25.6 8.8 54 69-122 11-65 (255)
301 PF02737 3HCDH_N: 3-hydroxyacy 50.3 30 0.00065 28.5 4.6 31 72-102 2-32 (180)
302 cd08170 GlyDH Glycerol dehydro 50.3 86 0.0019 28.7 8.0 105 97-210 4-110 (351)
303 PRK12938 acetyacetyl-CoA reduc 50.3 1.2E+02 0.0027 25.4 8.6 52 70-121 5-58 (246)
304 cd05278 FDH_like Formaldehyde 50.1 1.3E+02 0.0029 26.7 9.2 54 62-118 162-215 (347)
305 TIGR02638 lactal_redase lactal 50.1 1E+02 0.0022 28.6 8.6 89 93-188 6-99 (379)
306 PRK06172 short chain dehydroge 49.8 1.4E+02 0.003 25.2 9.0 54 69-122 8-62 (253)
307 PRK02102 ornithine carbamoyltr 49.7 76 0.0017 29.1 7.4 52 71-122 157-216 (331)
308 PRK05166 histidinol-phosphate 49.5 1E+02 0.0022 28.2 8.4 51 72-123 91-141 (371)
309 PF00465 Fe-ADH: Iron-containi 49.2 32 0.00069 31.7 5.0 109 95-212 2-132 (366)
310 cd05286 QOR2 Quinone oxidoredu 49.2 1.7E+02 0.0037 25.1 11.0 56 62-120 131-186 (320)
311 PRK07832 short chain dehydroge 49.1 1.7E+02 0.0038 25.1 10.5 29 71-99 3-31 (272)
312 cd05288 PGDH Prostaglandin deh 48.8 1.9E+02 0.0041 25.5 11.0 53 63-118 141-194 (329)
313 PRK08217 fabG 3-ketoacyl-(acyl 48.6 1.5E+02 0.0033 24.8 9.0 54 69-122 6-60 (253)
314 PRK12562 ornithine carbamoyltr 48.6 57 0.0012 30.0 6.4 51 72-122 159-217 (334)
315 cd08249 enoyl_reductase_like e 48.6 1.2E+02 0.0026 27.2 8.7 50 66-119 153-202 (339)
316 cd08259 Zn_ADH5 Alcohol dehydr 48.3 1.7E+02 0.0036 25.7 9.5 53 63-118 158-210 (332)
317 PRK09265 aminotransferase AlaT 48.2 1.7E+02 0.0038 27.0 9.9 75 43-122 71-147 (404)
318 PRK00779 ornithine carbamoyltr 48.1 86 0.0019 28.3 7.5 51 72-122 155-209 (304)
319 PRK07062 short chain dehydroge 47.8 1.8E+02 0.0038 24.8 10.8 32 69-100 9-40 (265)
320 cd08290 ETR 2-enoyl thioester 47.8 1.3E+02 0.0028 26.8 8.7 58 63-121 142-201 (341)
321 PF00290 Trp_syntA: Tryptophan 47.8 1.8E+02 0.0039 25.7 9.2 27 85-111 133-159 (259)
322 cd05188 MDR Medium chain reduc 47.6 1.7E+02 0.0037 24.6 10.2 51 63-117 130-180 (271)
323 cd05284 arabinose_DH_like D-ar 47.6 1.4E+02 0.003 26.6 8.9 52 64-119 164-216 (340)
324 PF02310 B12-binding: B12 bind 47.6 82 0.0018 23.4 6.4 93 82-184 18-114 (121)
325 PRK01713 ornithine carbamoyltr 47.6 51 0.0011 30.2 6.0 51 72-122 159-217 (334)
326 cd08255 2-desacetyl-2-hydroxye 47.6 1.5E+02 0.0032 25.4 8.9 50 62-115 92-142 (277)
327 TIGR02817 adh_fam_1 zinc-bindi 47.6 1.6E+02 0.0034 26.1 9.2 50 68-120 149-199 (336)
328 cd08260 Zn_ADH6 Alcohol dehydr 47.6 2.1E+02 0.0045 25.6 10.6 51 62-116 160-210 (345)
329 TIGR00877 purD phosphoribosyla 47.4 2.4E+02 0.0051 26.4 10.7 29 72-100 3-31 (423)
330 PRK09423 gldA glycerol dehydro 47.4 1.4E+02 0.003 27.6 8.9 109 93-210 7-117 (366)
331 TIGR02823 oxido_YhdH putative 47.4 1.5E+02 0.0032 26.1 9.0 53 65-120 142-195 (323)
332 PRK09414 glutamate dehydrogena 47.2 90 0.0019 29.9 7.7 52 49-100 212-263 (445)
333 PRK04284 ornithine carbamoyltr 47.2 55 0.0012 30.0 6.1 51 72-122 158-216 (332)
334 PRK06128 oxidoreductase; Provi 47.2 2E+02 0.0043 25.3 10.0 54 69-122 56-112 (300)
335 PRK08303 short chain dehydroge 47.2 1.7E+02 0.0036 26.1 9.3 53 69-121 9-72 (305)
336 PRK12749 quinate/shikimate deh 47.1 1.1E+02 0.0025 27.3 8.1 32 71-102 126-157 (288)
337 cd08276 MDR7 Medium chain dehy 46.7 2E+02 0.0044 25.2 11.3 54 63-120 156-209 (336)
338 PRK12826 3-ketoacyl-(acyl-carr 46.6 1.6E+02 0.0036 24.5 8.9 54 69-122 7-61 (251)
339 PRK09490 metH B12-dependent me 46.6 3.9E+02 0.0085 29.3 13.0 169 35-208 360-566 (1229)
340 TIGR01318 gltD_gamma_fam gluta 46.6 91 0.002 29.9 7.8 51 70-120 142-210 (467)
341 PRK08278 short chain dehydroge 46.5 1.9E+02 0.0042 24.9 9.8 54 69-122 7-68 (273)
342 PRK10490 sensor protein KdpD; 46.5 2.8E+02 0.006 29.1 11.8 107 70-183 252-375 (895)
343 PRK12810 gltD glutamate syntha 46.5 93 0.002 29.8 7.9 52 70-121 144-213 (471)
344 cd08279 Zn_ADH_class_III Class 46.3 2.3E+02 0.0049 25.7 11.2 53 62-117 177-229 (363)
345 cd08262 Zn_ADH8 Alcohol dehydr 46.2 2E+02 0.0044 25.5 9.8 55 61-118 155-209 (341)
346 cd08270 MDR4 Medium chain dehy 46.2 98 0.0021 26.9 7.6 51 67-120 132-182 (305)
347 PRK12939 short chain dehydroge 46.2 1.8E+02 0.0038 24.4 9.0 54 69-122 8-62 (250)
348 cd08182 HEPD Hydroxyethylphosp 46.1 1.5E+02 0.0031 27.4 8.9 85 96-188 3-90 (367)
349 PRK12744 short chain dehydroge 46.1 1.6E+02 0.0034 25.1 8.7 53 70-122 10-67 (257)
350 cd08248 RTN4I1 Human Reticulon 46.0 1.4E+02 0.0031 26.6 8.7 47 68-118 163-209 (350)
351 PRK07478 short chain dehydroge 46.0 1.6E+02 0.0035 24.9 8.8 54 69-122 7-61 (254)
352 PRK06181 short chain dehydroge 46.0 1.5E+02 0.0032 25.2 8.5 53 70-122 3-56 (263)
353 cd00616 AHBA_syn 3-amino-5-hyd 45.9 1.7E+02 0.0037 26.1 9.3 52 72-123 36-87 (352)
354 cd08264 Zn_ADH_like2 Alcohol d 45.9 1.3E+02 0.0029 26.4 8.5 37 62-98 157-193 (325)
355 PRK05876 short chain dehydroge 45.8 1.5E+02 0.0033 25.7 8.7 54 69-122 7-61 (275)
356 PRK12745 3-ketoacyl-(acyl-carr 45.6 1.7E+02 0.0037 24.7 8.8 53 70-122 4-58 (256)
357 cd08251 polyketide_synthase po 45.3 2E+02 0.0042 24.7 11.2 55 61-118 114-168 (303)
358 PRK11749 dihydropyrimidine deh 45.3 1.1E+02 0.0023 29.1 8.1 51 71-121 275-331 (457)
359 KOG0022 Alcohol dehydrogenase, 45.2 2.5E+02 0.0055 25.9 12.6 166 62-264 187-367 (375)
360 PRK07666 fabG 3-ketoacyl-(acyl 45.2 1.8E+02 0.004 24.3 9.0 53 70-122 9-62 (239)
361 PF11814 DUF3335: Peptidase_C3 45.2 56 0.0012 27.9 5.3 34 70-103 43-78 (207)
362 PRK03515 ornithine carbamoyltr 45.1 65 0.0014 29.6 6.2 51 72-122 159-217 (336)
363 PLN02342 ornithine carbamoyltr 44.9 97 0.0021 28.7 7.4 51 72-122 197-251 (348)
364 PRK06077 fabG 3-ketoacyl-(acyl 44.8 1.6E+02 0.0034 24.8 8.5 53 70-122 8-62 (252)
365 cd08183 Fe-ADH2 Iron-containin 44.8 1.9E+02 0.004 26.8 9.4 83 97-188 4-88 (374)
366 TIGR03590 PseG pseudaminic aci 44.7 2.2E+02 0.0048 25.1 10.1 81 34-123 2-88 (279)
367 PRK05562 precorrin-2 dehydroge 44.7 1.9E+02 0.0041 24.9 8.7 114 71-198 27-155 (223)
368 PRK05479 ketol-acid reductoiso 44.7 2.5E+02 0.0055 25.7 12.0 46 71-118 19-64 (330)
369 PRK07791 short chain dehydroge 44.6 2E+02 0.0043 25.2 9.3 72 69-140 7-89 (286)
370 PF13478 XdhC_C: XdhC Rossmann 44.6 31 0.00068 27.2 3.6 31 72-102 1-31 (136)
371 PRK12775 putative trifunctiona 44.6 1.7E+02 0.0038 31.1 10.1 32 70-101 431-462 (1006)
372 PRK12769 putative oxidoreducta 44.5 1.7E+02 0.0037 29.4 9.7 51 70-120 328-396 (654)
373 PRK08334 translation initiatio 44.3 69 0.0015 29.7 6.3 42 81-122 180-226 (356)
374 PRK13581 D-3-phosphoglycerate 44.3 2.2E+02 0.0047 27.9 10.1 104 70-197 141-246 (526)
375 cd08193 HVD 5-hydroxyvalerate 44.1 2.3E+02 0.005 26.2 9.9 88 93-188 3-96 (376)
376 cd00288 Pyruvate_Kinase Pyruva 44.0 2E+02 0.0043 27.9 9.6 84 47-140 359-449 (480)
377 cd08186 Fe-ADH8 Iron-containin 43.9 2.4E+02 0.0052 26.2 10.0 14 174-188 84-97 (383)
378 PRK02255 putrescine carbamoylt 43.8 1.1E+02 0.0025 28.0 7.7 51 72-122 157-214 (338)
379 cd08286 FDH_like_ADH2 formalde 43.7 1.6E+02 0.0035 26.3 8.7 52 62-117 161-213 (345)
380 cd08283 FDH_like_1 Glutathione 43.7 2.2E+02 0.0049 26.1 9.8 56 61-119 178-234 (386)
381 cd08253 zeta_crystallin Zeta-c 43.7 2.1E+02 0.0046 24.6 10.8 54 63-119 140-193 (325)
382 PRK07806 short chain dehydroge 43.6 2E+02 0.0043 24.2 9.4 54 69-122 7-62 (248)
383 COG0379 NadA Quinolinate synth 43.5 2.6E+02 0.0056 25.5 12.8 128 73-212 142-277 (324)
384 cd05276 p53_inducible_oxidored 43.5 2E+02 0.0044 24.7 9.2 52 64-118 136-187 (323)
385 cd08551 Fe-ADH iron-containing 43.4 1.5E+02 0.0032 27.3 8.5 86 96-188 3-93 (370)
386 PRK06949 short chain dehydroge 43.3 1.6E+02 0.0035 24.8 8.4 33 69-101 10-42 (258)
387 cd08238 sorbose_phosphate_red 43.2 1.8E+02 0.004 27.0 9.2 51 62-114 170-222 (410)
388 PRK12414 putative aminotransfe 43.2 2.7E+02 0.0058 25.6 10.8 51 72-123 93-143 (384)
389 cd08192 Fe-ADH7 Iron-containin 43.2 1.6E+02 0.0035 27.1 8.8 88 94-188 2-94 (370)
390 PRK07324 transaminase; Validat 43.2 1.1E+02 0.0024 28.1 7.6 51 72-123 83-133 (373)
391 CHL00149 odpA pyruvate dehydro 43.0 2.1E+02 0.0045 26.3 9.3 39 86-124 179-229 (341)
392 PRK07454 short chain dehydroge 42.8 2E+02 0.0043 24.0 8.9 53 70-122 8-61 (241)
393 PRK10537 voltage-gated potassi 42.8 2.9E+02 0.0063 25.9 10.4 50 70-124 241-290 (393)
394 PRK15407 lipopolysaccharide bi 42.6 2.4E+02 0.0052 26.8 9.9 53 71-123 80-140 (438)
395 PRK06202 hypothetical protein; 42.6 37 0.0008 28.9 4.1 38 175-212 62-99 (232)
396 cd08254 hydroxyacyl_CoA_DH 6-h 42.6 2.4E+02 0.0051 24.8 10.7 56 62-121 160-215 (338)
397 cd05283 CAD1 Cinnamyl alcohol 42.4 1.1E+02 0.0025 27.3 7.5 52 65-120 167-218 (337)
398 PLN03026 histidinol-phosphate 42.3 1.6E+02 0.0034 27.2 8.5 51 72-123 106-156 (380)
399 PRK06290 aspartate aminotransf 42.2 2.9E+02 0.0063 25.8 11.0 51 72-123 109-159 (410)
400 PF00764 Arginosuc_synth: Argi 42.2 3E+02 0.0065 25.9 13.4 126 72-206 1-138 (388)
401 PF13460 NAD_binding_10: NADH( 42.1 59 0.0013 26.1 5.1 47 72-123 2-48 (183)
402 TIGR00658 orni_carb_tr ornithi 42.0 1.4E+02 0.003 27.0 7.8 51 72-122 151-208 (304)
403 PLN02623 pyruvate kinase 42.0 3.7E+02 0.0079 26.8 11.9 123 82-212 366-510 (581)
404 PTZ00377 alanine aminotransfer 42.0 3.2E+02 0.0069 26.1 10.8 53 71-123 140-192 (481)
405 TIGR03297 Ppyr-DeCO2ase phosph 41.9 2.3E+02 0.0051 26.2 9.5 65 76-140 60-141 (361)
406 PRK07814 short chain dehydroge 41.9 2E+02 0.0044 24.6 8.8 53 69-121 11-64 (263)
407 PRK06124 gluconate 5-dehydroge 41.9 2.1E+02 0.0045 24.2 8.8 53 69-121 12-65 (256)
408 PRK10669 putative cation:proto 41.8 3.1E+02 0.0067 26.9 10.9 43 166-208 472-515 (558)
409 PRK05866 short chain dehydroge 41.7 1.9E+02 0.0042 25.4 8.8 52 70-121 42-94 (293)
410 PLN02477 glutamate dehydrogena 41.6 2.2E+02 0.0048 27.0 9.3 52 49-101 186-238 (410)
411 COG0169 AroE Shikimate 5-dehyd 41.6 1.1E+02 0.0024 27.4 7.1 72 30-102 87-159 (283)
412 PRK12828 short chain dehydroge 41.4 2E+02 0.0044 23.7 9.7 55 69-123 8-63 (239)
413 PLN02918 pyridoxine (pyridoxam 41.3 2.1E+02 0.0046 28.2 9.4 49 70-118 137-192 (544)
414 TIGR03588 PseC UDP-4-keto-6-de 41.2 2.6E+02 0.0055 25.6 9.8 50 72-123 47-98 (380)
415 PRK14804 ornithine carbamoyltr 41.2 1.4E+02 0.0031 27.0 7.8 27 78-104 163-189 (311)
416 cd08265 Zn_ADH3 Alcohol dehydr 41.2 1.9E+02 0.0042 26.5 9.0 55 63-120 199-253 (384)
417 PRK02731 histidinol-phosphate 41.1 1.5E+02 0.0032 26.9 8.1 51 72-123 87-137 (367)
418 PRK06197 short chain dehydroge 41.1 2.5E+02 0.0054 24.7 10.7 31 70-100 18-48 (306)
419 TIGR03801 asp_4_decarbox aspar 41.0 3.6E+02 0.0078 26.5 11.2 82 42-123 126-215 (521)
420 PRK07200 aspartate/ornithine c 41.0 79 0.0017 29.8 6.3 45 78-122 204-254 (395)
421 PRK07890 short chain dehydroge 40.9 2.1E+02 0.0045 24.2 8.6 54 69-122 6-60 (258)
422 PRK07035 short chain dehydroge 40.8 2.2E+02 0.0048 24.0 9.1 52 70-121 10-62 (252)
423 PLN02306 hydroxypyruvate reduc 40.8 2.1E+02 0.0046 26.8 9.1 119 70-197 166-288 (386)
424 PRK12778 putative bifunctional 40.7 1.2E+02 0.0025 31.1 8.0 51 71-121 572-628 (752)
425 PRK09134 short chain dehydroge 40.7 2.3E+02 0.0049 24.1 9.9 54 69-122 10-65 (258)
426 PRK12480 D-lactate dehydrogena 40.7 1.8E+02 0.0039 26.6 8.4 101 71-197 148-250 (330)
427 PRK05867 short chain dehydroge 40.4 2.3E+02 0.0049 24.0 8.9 53 69-121 10-63 (253)
428 PRK08265 short chain dehydroge 40.4 2.3E+02 0.0051 24.1 9.5 51 69-121 7-57 (261)
429 TIGR02095 glgA glycogen/starch 40.3 1.9E+02 0.0041 27.5 8.9 26 78-103 20-45 (473)
430 PRK15409 bifunctional glyoxyla 40.1 1.4E+02 0.0031 27.1 7.7 104 70-197 146-252 (323)
431 PF03807 F420_oxidored: NADP o 40.1 1.3E+02 0.0029 21.2 6.7 48 72-121 2-53 (96)
432 PRK12770 putative glutamate sy 40.1 1.4E+02 0.003 27.2 7.7 51 71-121 174-230 (352)
433 cd08263 Zn_ADH10 Alcohol dehyd 40.0 2.4E+02 0.0052 25.6 9.3 50 64-116 184-233 (367)
434 PRK08361 aspartate aminotransf 39.9 1.8E+02 0.0039 26.7 8.6 52 71-123 95-146 (391)
435 PRK12429 3-hydroxybutyrate deh 39.8 2.3E+02 0.0049 23.8 9.3 54 69-122 5-59 (258)
436 PRK06194 hypothetical protein; 39.8 2.5E+02 0.0054 24.2 9.7 53 70-122 8-61 (287)
437 KOG1176 Acyl-CoA synthetase [L 39.6 3.8E+02 0.0083 26.4 12.1 59 65-123 69-127 (537)
438 cd08235 iditol_2_DH_like L-idi 39.6 2.7E+02 0.0059 24.7 11.5 53 62-117 160-212 (343)
439 TIGR03206 benzo_BadH 2-hydroxy 39.6 2.3E+02 0.0049 23.7 8.9 54 69-122 4-58 (250)
440 cd08172 GlyDH-like1 Glycerol d 39.6 1.5E+02 0.0033 27.0 7.9 34 174-210 76-109 (347)
441 TIGR00936 ahcY adenosylhomocys 39.6 1.4E+02 0.003 28.3 7.7 117 63-207 190-312 (406)
442 cd06453 SufS_like Cysteine des 39.5 1.5E+02 0.0034 26.8 8.0 54 71-124 63-122 (373)
443 PRK12814 putative NADPH-depend 39.5 2.1E+02 0.0045 28.8 9.4 54 66-120 321-380 (652)
444 PRK08248 O-acetylhomoserine am 39.5 1.5E+02 0.0033 28.1 8.1 77 72-154 82-162 (431)
445 COG0075 Serine-pyruvate aminot 39.4 2.6E+02 0.0056 26.3 9.3 34 67-101 79-112 (383)
446 PRK06718 precorrin-2 dehydroge 39.3 2E+02 0.0044 24.1 8.0 113 71-198 12-139 (202)
447 PRK07985 oxidoreductase; Provi 39.3 2.5E+02 0.0053 24.7 9.0 54 69-122 50-106 (294)
448 PRK13984 putative oxidoreducta 39.1 1.3E+02 0.0028 29.8 7.8 51 70-120 284-352 (604)
449 PRK06436 glycerate dehydrogena 39.1 2.9E+02 0.0063 24.9 9.5 101 70-197 123-225 (303)
450 PLN02928 oxidoreductase family 39.1 1.7E+02 0.0037 26.9 8.1 115 70-197 160-278 (347)
451 PF02887 PK_C: Pyruvate kinase 39.1 1.7E+02 0.0036 22.0 7.8 64 73-141 22-87 (117)
452 PTZ00433 tyrosine aminotransfe 39.0 1.9E+02 0.0042 26.9 8.7 52 71-123 106-157 (412)
453 PRK06079 enoyl-(acyl carrier p 39.0 2.3E+02 0.005 24.1 8.6 30 70-99 9-40 (252)
454 PRK04523 N-acetylornithine car 38.8 67 0.0015 29.5 5.3 45 78-122 185-236 (335)
455 PRK08213 gluconate 5-dehydroge 38.7 2.4E+02 0.0053 23.9 9.0 54 69-122 13-67 (259)
456 cd06450 DOPA_deC_like DOPA dec 38.4 1.9E+02 0.004 25.8 8.3 52 72-123 60-124 (345)
457 PF12831 FAD_oxidored: FAD dep 38.4 48 0.001 31.3 4.5 32 72-103 2-33 (428)
458 PF02254 TrkA_N: TrkA-N domain 38.4 1.6E+02 0.0034 21.6 10.4 87 104-209 10-97 (116)
459 PRK08264 short chain dehydroge 38.2 1.7E+02 0.0037 24.3 7.6 32 70-101 8-40 (238)
460 COG1064 AdhP Zn-dependent alco 38.2 3E+02 0.0064 25.4 9.3 79 105-207 180-258 (339)
461 PRK06947 glucose-1-dehydrogena 38.2 1.7E+02 0.0037 24.6 7.6 53 70-122 4-58 (248)
462 PRK09072 short chain dehydroge 38.1 2.4E+02 0.0053 24.0 8.7 33 69-101 6-38 (263)
463 TIGR01963 PHB_DH 3-hydroxybuty 38.1 2.4E+02 0.0052 23.6 8.6 53 70-122 3-56 (255)
464 PRK07677 short chain dehydroge 38.1 2.5E+02 0.0054 23.7 8.9 53 70-122 3-56 (252)
465 PRK06425 histidinol-phosphate 38.1 2.3E+02 0.0049 25.4 8.8 49 72-123 60-108 (332)
466 PRK08936 glucose-1-dehydrogena 37.9 2.5E+02 0.0055 23.8 9.8 53 69-121 8-62 (261)
467 PRK05839 hypothetical protein; 37.9 3.2E+02 0.0069 25.0 11.1 78 43-123 59-138 (374)
468 PRK15469 ghrA bifunctional gly 37.9 2.6E+02 0.0057 25.3 9.0 104 70-197 137-242 (312)
469 PLN02514 cinnamyl-alcohol dehy 37.8 2.2E+02 0.0047 25.9 8.6 55 63-120 176-230 (357)
470 TIGR01831 fabG_rel 3-oxoacyl-( 37.7 2.4E+02 0.0052 23.5 8.7 51 72-122 2-54 (239)
471 PRK08085 gluconate 5-dehydroge 37.7 2.5E+02 0.0054 23.7 9.3 54 69-122 10-64 (254)
472 TIGR01327 PGDH D-3-phosphoglyc 37.7 2.6E+02 0.0057 27.3 9.6 105 70-197 139-245 (525)
473 cd08272 MDR6 Medium chain dehy 37.6 2.7E+02 0.0059 24.1 10.7 57 61-121 138-194 (326)
474 COG0796 MurI Glutamate racemas 37.5 1.4E+02 0.003 26.6 6.9 48 163-213 55-103 (269)
475 TIGR01317 GOGAT_sm_gam glutama 37.5 73 0.0016 30.7 5.7 51 70-120 144-212 (485)
476 TIGR03325 BphB_TodD cis-2,3-di 37.5 2.6E+02 0.0056 23.8 9.3 50 69-121 6-56 (262)
477 TIGR01292 TRX_reduct thioredox 37.4 1.6E+02 0.0035 25.4 7.5 49 71-119 143-195 (300)
478 PRK09496 trkA potassium transp 37.4 3.5E+02 0.0076 25.3 13.2 49 72-123 3-52 (453)
479 PF00208 ELFV_dehydrog: Glutam 37.3 1.3E+02 0.0029 26.2 6.8 52 50-101 12-64 (244)
480 PF11760 CbiG_N: Cobalamin syn 37.2 90 0.0019 22.6 4.7 47 168-214 5-51 (84)
481 PRK09853 putative selenate red 37.2 1.4E+02 0.003 31.9 7.9 51 70-120 540-608 (1019)
482 TIGR03316 ygeW probable carbam 36.9 97 0.0021 28.8 6.1 44 79-122 188-237 (357)
483 PRK06138 short chain dehydroge 36.9 2.5E+02 0.0054 23.5 9.0 53 69-122 6-59 (252)
484 PRK09754 phenylpropionate diox 36.8 89 0.0019 29.0 6.0 50 71-120 146-205 (396)
485 TIGR02415 23BDH acetoin reduct 36.8 2.6E+02 0.0055 23.5 9.0 52 71-122 3-55 (254)
486 cd08173 Gro1PDH Sn-glycerol-1- 36.7 2.4E+02 0.0052 25.6 8.7 106 94-210 2-111 (339)
487 COG0118 HisH Glutamine amidotr 36.7 1.5E+02 0.0031 25.3 6.5 56 71-136 5-60 (204)
488 PRK05653 fabG 3-ketoacyl-(acyl 36.6 2.5E+02 0.0053 23.3 9.4 53 70-122 7-60 (246)
489 CHL00194 ycf39 Ycf39; Provisio 36.5 1.3E+02 0.0028 26.9 6.8 31 71-101 3-33 (317)
490 PF01494 FAD_binding_3: FAD bi 36.4 52 0.0011 29.2 4.3 31 71-101 3-33 (356)
491 PRK12549 shikimate 5-dehydroge 36.4 1.2E+02 0.0025 27.1 6.4 32 70-101 128-159 (284)
492 PF00890 FAD_binding_2: FAD bi 36.0 53 0.0011 30.5 4.4 31 72-102 2-32 (417)
493 KOG0399 Glutamate synthase [Am 35.9 1.2E+02 0.0027 32.9 7.0 49 54-102 1764-1818(2142)
494 PF05185 PRMT5: PRMT5 arginine 35.8 63 0.0014 31.0 4.8 37 176-212 189-225 (448)
495 PRK06371 translation initiatio 35.8 1.3E+02 0.0028 27.6 6.6 57 66-123 135-204 (329)
496 PF04989 CmcI: Cephalosporin h 35.8 1.3E+02 0.0028 25.6 6.2 47 163-211 23-70 (206)
497 PRK06701 short chain dehydroge 35.8 3E+02 0.0066 24.1 9.9 53 70-122 48-102 (290)
498 PRK08363 alanine aminotransfer 35.7 2E+02 0.0044 26.5 8.2 49 72-121 96-144 (398)
499 PHA02542 41 41 helicase; Provi 35.7 4.1E+02 0.009 25.6 11.1 147 63-210 185-353 (473)
500 PRK08017 oxidoreductase; Provi 35.6 2.7E+02 0.0058 23.4 9.8 51 70-123 4-54 (256)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-63 Score=439.38 Aligned_cols=258 Identities=53% Similarity=0.878 Sum_probs=245.5
Q ss_pred HHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 023565 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (280)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~ 87 (280)
++.+.+.+++|||++++++....+++||+|+|++||+||.|||.+.+|+.+|+++|.+.||.+ ||++||||+|++||+.
T Consensus 2 ~~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~t-IVE~TSGNTGI~LA~v 80 (300)
T COG0031 2 YESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGT-IVEATSGNTGIALAMV 80 (300)
T ss_pred ccchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCE-EEEcCCChHHHHHHHH
Confidence 356788999999999999998888999999999999999999999999999999999999975 9999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCC-HHHHHHHHHHHHHhCCC-eEEcCCCCCCccHHHHHHhHHH
Q 023565 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR-FEEILEKGEEILKKTPD-GYLLRQFENPANPKIHYETTGP 165 (280)
Q Consensus 88 a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~ 165 (280)
|+.+|+++++|||++++++|+++|+.|||+|++++...+ +..+.+++++++++.++ .++++||+||.|+.+||.|++.
T Consensus 81 aa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~ 160 (300)
T COG0031 81 AAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGP 160 (300)
T ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHH
Confidence 999999999999999999999999999999999997444 88999999999999888 6778899999999999999999
Q ss_pred HHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCcccCcccCCCCccccccccCCeE
Q 023565 166 EIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEV 245 (280)
Q Consensus 166 Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~ 245 (280)
||++|+++.+|++|+++|||||++|++++||+.+|+++|++|||++|+.+..|. .++.++|||.+++|.+++.+.+|++
T Consensus 161 EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v 239 (300)
T COG0031 161 EIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEV 239 (300)
T ss_pred HHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceE
Confidence 999999888999999999999999999999999999999999999999887666 8999999999999988999999999
Q ss_pred EEeCHHHHHHHHHHhhhcCCcc
Q 023565 246 ITVSHKIDLHLLHFCCCSSPTL 267 (280)
Q Consensus 246 ~~V~d~ea~~~~~~la~~eG~~ 267 (280)
+.|+|+|+++++|+|+++||++
T Consensus 240 ~~V~d~~A~~~~r~La~~eGil 261 (300)
T COG0031 240 IRVSDEEAIATARRLAREEGLL 261 (300)
T ss_pred EEECHHHHHHHHHHHHHHhCee
Confidence 9999999999999999999998
No 2
>PLN03013 cysteine synthase
Probab=100.00 E-value=2.8e-62 Score=452.69 Aligned_cols=270 Identities=60% Similarity=1.009 Sum_probs=250.8
Q ss_pred hhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHH
Q 023565 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA 85 (280)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA 85 (280)
.+++++.+.+++|||++++.+++..+++||+|+|++|||||||||+|.+++.+++++|.+.||.++||++||||||+|+|
T Consensus 112 ~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA 191 (429)
T PLN03013 112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA 191 (429)
T ss_pred HHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHH
Confidence 46788999999999999999988778899999999999999999999999999999999999877799999999999999
Q ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 023565 86 FIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGP 165 (280)
Q Consensus 86 ~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (280)
++|+.+|++++||||++++++|+++|+.|||+|+.+++..++.++.+.+++++++.++++|++||+||.|+.+||.|+++
T Consensus 192 ~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~ 271 (429)
T PLN03013 192 FIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP 271 (429)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987655678889999998887688999999999999779999999
Q ss_pred HHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCcccCcccCCCCccccccccCCeE
Q 023565 166 EIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEV 245 (280)
Q Consensus 166 Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~ 245 (280)
||++|++++||+||+|+|+||+++|+++++|+.+|+++||+|||++++.+..+++.++.++|++.+.+|+.++++++|++
T Consensus 272 EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~v 351 (429)
T PLN03013 272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEV 351 (429)
T ss_pred HHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEE
Confidence 99999977899999999999999999999999999999999999999888778888888999999988998888999999
Q ss_pred EEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 246 ITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 246 ~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
+.|+|+|+++++++|++.+|++ .+++++++
T Consensus 352 v~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkl 388 (429)
T PLN03013 352 IAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKV 388 (429)
T ss_pred EEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHH
Confidence 9999999999999999988886 45565553
No 3
>PLN02565 cysteine synthase
Probab=100.00 E-value=1.8e-61 Score=438.23 Aligned_cols=271 Identities=67% Similarity=1.086 Sum_probs=246.9
Q ss_pred hhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHH
Q 023565 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA 85 (280)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA 85 (280)
..+++++..+++|||++++.++...+.+||+|+|++|||||||||+|.+++..+.++|.+.+|.++||++||||||+|+|
T Consensus 4 ~~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA 83 (322)
T PLN02565 4 SIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLA 83 (322)
T ss_pred hhhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHH
Confidence 35678999999999999998876666899999999999999999999999999999998888877799999999999999
Q ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 023565 86 FIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGP 165 (280)
Q Consensus 86 ~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (280)
++|+.+|++|+||||+++++.|+++++.|||+|+.+++..+++++.+.+++++++.++.+|++||+||.|+..||+|+++
T Consensus 84 ~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~ 163 (322)
T PLN02565 84 FMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGP 163 (322)
T ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987545678889999998876678999999999998789999999
Q ss_pred HHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCcccCcccCCCCccccccccCCeE
Q 023565 166 EIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEV 245 (280)
Q Consensus 166 Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~ 245 (280)
||++|++++||+||+|+|+||+++|++.++|+.+|++|||+|||++++++..+++.++.++|++.+..|..+..+.+|++
T Consensus 164 Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~ 243 (322)
T PLN02565 164 EIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEV 243 (322)
T ss_pred HHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEE
Confidence 99999976899999999999999999999999999999999999999988878887888899998877777777889999
Q ss_pred EEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhhh
Q 023565 246 ITVSHKIDLHLLHFCCCSSPTL-------SFQKKITYN 276 (280)
Q Consensus 246 ~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~~ 276 (280)
+.|+|+|+++++++|++.+|++ ++++++++.
T Consensus 244 v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~a 281 (322)
T PLN02565 244 VQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKIA 281 (322)
T ss_pred EEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHHH
Confidence 9999999999999999876665 667766653
No 4
>PLN00011 cysteine synthase
Probab=100.00 E-value=1.6e-59 Score=426.31 Aligned_cols=267 Identities=70% Similarity=1.085 Sum_probs=245.1
Q ss_pred CCccchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChH
Q 023565 1 MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNT 80 (280)
Q Consensus 1 ~~~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~ 80 (280)
|++.-..++++...+++|||+++++++...+.+||+|+|++|||||||||++.+++.++.++|.+.||.++||++|+|||
T Consensus 1 ~~~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~ 80 (323)
T PLN00011 1 MEDRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNT 80 (323)
T ss_pred CcchhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChH
Confidence 66666778889999999999999998876678999999999999999999999999999999999998677999999999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHH
Q 023565 81 GVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHY 160 (280)
Q Consensus 81 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (280)
|+|+|++|+.+|++|+||||+++++.|+++++.|||+|+.++...+.+++++++++++++.++++|++||+|+.++..||
T Consensus 81 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~ 160 (323)
T PLN00011 81 GIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHY 160 (323)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHH
Confidence 99999999999999999999999999999999999999999965445567788888888766789999999999887799
Q ss_pred HhHHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCcccCcccCCCCccccccc
Q 023565 161 ETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDID 240 (280)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~~~~~glg~~~~~~~~~~~ 240 (280)
.++++||++|+.++||+||+|+|+||+++|++.++|+.+|++|||||||++++.+..+++..+.++|++.+..|..+...
T Consensus 161 ~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~ 240 (323)
T PLN00011 161 RTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLT 240 (323)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChh
Confidence 99999999999668999999999999999999999999999999999999998887777777888899988777777778
Q ss_pred cCCeEEEeCHHHHHHHHHHhhhcCCcc
Q 023565 241 ILDEVITVSHKIDLHLLHFCCCSSPTL 267 (280)
Q Consensus 241 ~vd~~~~V~d~ea~~~~~~la~~eG~~ 267 (280)
.+|+++.|+|+|+++++++|++.+|++
T Consensus 241 ~~d~~v~V~d~e~~~a~~~l~~~~Gi~ 267 (323)
T PLN00011 241 IVDEIIQVTGEEAIETAKLLALKEGLL 267 (323)
T ss_pred hCCeEEEECHHHHHHHHHHHHHhcCCe
Confidence 899999999999999999999999887
No 5
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-61 Score=427.98 Aligned_cols=265 Identities=23% Similarity=0.309 Sum_probs=240.0
Q ss_pred cchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 023565 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (280)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~a 83 (280)
...++++++..+.+|||++++.|++.+|++||+|+|++||+||||.|||++.+..+.+++.. ..+||++|+||||++
T Consensus 12 i~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQG 88 (347)
T COG1171 12 ILAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQG 88 (347)
T ss_pred HHHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHHH
Confidence 34577899999999999999999999999999999999999999999999999887533222 244999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhH
Q 023565 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (280)
Q Consensus 84 lA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (280)
+|++|+++|+|++||||.++|..|++.++.|||+|++++ .+|+++.+.++++++++ |+.|++|||+|+.+ +||+|+
T Consensus 89 vA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g--~~~dda~~~a~~~a~~~-G~~~i~pfD~p~vi-AGQGTi 164 (347)
T COG1171 89 VAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHG--DNFDDAYAAAEELAEEE-GLTFVPPFDDPDVI-AGQGTI 164 (347)
T ss_pred HHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEEC--CCHHHHHHHHHHHHHHc-CCEEeCCCCCccee-ecccHH
Confidence 999999999999999999999999999999999999999 56899999999999998 89999999999998 899999
Q ss_pred HHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC------CCcccCcccCCC-
Q 023565 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR------GKHLIQGIGAGI- 232 (280)
Q Consensus 164 ~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~------~~~~~~glg~~~- 232 (280)
++||++|++..||+||||+|+||+++|++.++|.+.|++|||||||++++++. .|++ ..++++|+++..
T Consensus 165 ~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~ 244 (347)
T COG1171 165 ALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRP 244 (347)
T ss_pred HHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCC
Confidence 99999999544799999999999999999999999999999999999999754 4522 456889998754
Q ss_pred --CccccccccCCeEEEeCHHHHHHHHHHh-------hhcCCcchhhhHHhh
Q 023565 233 --IPSVLDIDILDEVITVSHKIDLHLLHFC-------CCSSPTLSFQKKITY 275 (280)
Q Consensus 233 --~~~~~~~~~vd~~~~V~d~ea~~~~~~l-------a~~eG~~~~~~~~~~ 275 (280)
.+|.+.++++|+++.|+|+|+.+++++| +++.|++++|+|.+|
T Consensus 245 g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~ 296 (347)
T COG1171 245 GDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAG 296 (347)
T ss_pred CHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhh
Confidence 5788899999999999999999999998 667899999999876
No 6
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=8.2e-60 Score=433.48 Aligned_cols=261 Identities=53% Similarity=0.925 Sum_probs=242.3
Q ss_pred hHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023565 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (280)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~ 86 (280)
+.+++.+.+++|||+++++++...|++||+|+|++|||||||||++++++.+++++|.+.||.++||++|+||||+|+|+
T Consensus 49 ~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~ 128 (368)
T PLN02556 49 IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAF 128 (368)
T ss_pred hhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHH
Confidence 56889999999999999999887889999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHH
Q 023565 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (280)
Q Consensus 87 ~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (280)
+|+.+|++|+||||+.++..|+.+++.|||+|+.+++..++...+++++++++++++++|++||+||.++..||.++++|
T Consensus 129 ~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~E 208 (368)
T PLN02556 129 MAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPE 208 (368)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999864445577888888888877889999999999986799999999
Q ss_pred HHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCcccCcccCCCCccccccccCCeEE
Q 023565 167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVI 246 (280)
Q Consensus 167 i~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~~ 246 (280)
|++|+.+.+|+||+|+|||||++|+++++|+.+|++|||+|||++++.+..+.+..+.+.|++.+..|+.++.+++|+++
T Consensus 209 I~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v 288 (368)
T PLN02556 209 IWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVL 288 (368)
T ss_pred HHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEE
Confidence 99998668999999999999999999999999999999999999998887777777777888888777778888999999
Q ss_pred EeCHHHHHHHHHHhhhcCCcc
Q 023565 247 TVSHKIDLHLLHFCCCSSPTL 267 (280)
Q Consensus 247 ~V~d~ea~~~~~~la~~eG~~ 267 (280)
.|+|+|+++++++|++.+|++
T Consensus 289 ~Vsd~ea~~a~r~l~~~eGi~ 309 (368)
T PLN02556 289 EVSSEDAVNMARELALKEGLM 309 (368)
T ss_pred EECHHHHHHHHHHHHHHcCCE
Confidence 999999999999999999986
No 7
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=2e-58 Score=415.55 Aligned_cols=263 Identities=54% Similarity=0.902 Sum_probs=238.8
Q ss_pred hcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHc
Q 023565 12 TELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91 (280)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~ 91 (280)
..++++|||+++++|++..|.+||+|+|++|||||||+|++.+++..+.++|.+.+|.+ |+++|+||||+|+|++|+.+
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDT-IIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHHHHHHc
Confidence 45789999999999998888999999999999999999999999999999998777754 99999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHHhh
Q 023565 92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDS 171 (280)
Q Consensus 92 G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~ 171 (280)
|++|+||||+++++.|+++++.+||+|+.++++.+++++.+.+++++++.+++++++||+|+.++..||+++++||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997555788999999998876567899999999987689999999999999
Q ss_pred CCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCcccCcccCCCCccccccccCCeEEEeCHH
Q 023565 172 GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVITVSHK 251 (280)
Q Consensus 172 ~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~~~V~d~ 251 (280)
+++||+||+|+|+||+++|++.++|+.+|.+|||+|||++++++..+++..+.+.+++.+..|+.+..+++|+++.|+|+
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~ 240 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDE 240 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHH
Confidence 66799999999999999999999999999999999999999888766665566778887777887778899999999999
Q ss_pred HHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 252 IDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 252 ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
|+++++++|++.+|++ +++++++.
T Consensus 241 e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~ 271 (299)
T TIGR01136 241 DAIETARRLAREEGILVGISSGAAVAAALKL 271 (299)
T ss_pred HHHHHHHHHHHHhCceEcchHHHHHHHHHHH
Confidence 9999999999887775 67777664
No 8
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=3e-58 Score=413.15 Aligned_cols=260 Identities=39% Similarity=0.649 Sum_probs=229.2
Q ss_pred hHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023565 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (280)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~ 86 (280)
+++++...+++|||+++++|+...|.+||+|+|++|||||||+|++.+++.++.++|.+.+|.+ ||++|+||||+|+|+
T Consensus 2 ~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~-vv~aSsGN~g~alA~ 80 (296)
T PRK11761 2 AYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDT-LIEATSGNTGIALAM 80 (296)
T ss_pred ccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCE-EEEeCCChHHHHHHH
Confidence 4678999999999999999988788999999999999999999999999999999998888754 999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHH
Q 023565 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (280)
Q Consensus 87 ~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (280)
+|+.+|++|+||||+++++.|++.++.|||+|+.++...+++++.+.+++++++. +++|++||+|+.++..||.|+++|
T Consensus 81 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~E 159 (296)
T PRK11761 81 IAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPE 159 (296)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHH
Confidence 9999999999999999999999999999999999996446788888888888776 679999999999987789999999
Q ss_pred HHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCcccCcccCCCCccccccccCCeEE
Q 023565 167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVI 246 (280)
Q Consensus 167 i~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~~ 246 (280)
|++|+++.+|+||+|+|+||+++|++.++|+++|++|||+|||++++.+.+ +.+......+..++...+|+++
T Consensus 160 i~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g-------~~~~~~~~~~~~~~~~~vd~~v 232 (296)
T PRK11761 160 IWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG-------IRRWPEEYLPKIFDASRVDRVL 232 (296)
T ss_pred HHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC-------CCCCCCCcCCcccChhhCCEEE
Confidence 999996679999999999999999999999999999999999998876532 1112222234455677899999
Q ss_pred EeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 247 TVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 247 ~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
.|+|+|+++++++|++.+|++ +++++++.
T Consensus 233 ~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~ 268 (296)
T PRK11761 233 DVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRI 268 (296)
T ss_pred EECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHH
Confidence 999999999999999987775 55666553
No 9
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=6.4e-58 Score=412.08 Aligned_cols=262 Identities=53% Similarity=0.887 Sum_probs=235.6
Q ss_pred hcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHc
Q 023565 12 TELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAAR 91 (280)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~ 91 (280)
..++++|||+++++ ....|.+||+|+|++|||||||||++.+++.++.++|.+.+|.+ ||++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKT-IVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCE-EEEeCCChhHHHHHHHHHHc
Confidence 46789999999998 55678899999999999999999999999999999998777654 99999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCC-eEEcCCCCCCccHHHHHHhHHHHHHHh
Q 023565 92 GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPD-GYLLRQFENPANPKIHYETTGPEIWQD 170 (280)
Q Consensus 92 G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (280)
|++|+||||+++++.|++.|+.+||+|+.++++.+++++.+.+++++++.++ +++++||+||.++..||.|+++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999754456788889998887744 558999999998778999999999999
Q ss_pred hCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCcccCcccCCCCccccccccCCeEEEeCH
Q 023565 171 SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVITVSH 250 (280)
Q Consensus 171 ~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~~~V~d 250 (280)
+++.||+||+|+|+||+++|++.+||+++|++|||+|||.+++.+...++.++.+++++.+..+..++.+.+|+++.|+|
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d 239 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSD 239 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECH
Confidence 96679999999999999999999999999999999999999988776666677788888877777777788999999999
Q ss_pred HHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 251 KIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 251 ~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
+|+++++++|++.+|++ ++++++++
T Consensus 240 ~e~~~a~~~l~~~~gi~~~pssga~laa~~~~ 271 (298)
T TIGR01139 240 EEAIETARRLAAEEGILVGISSGAAVAAALKL 271 (298)
T ss_pred HHHHHHHHHHHHhcCceEcccHHHHHHHHHHH
Confidence 99999999999988875 66777665
No 10
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=4.3e-57 Score=404.71 Aligned_cols=256 Identities=38% Similarity=0.673 Sum_probs=226.4
Q ss_pred hhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 023565 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90 (280)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~ 90 (280)
+.+.+++|||++++++++..|.+||+|+|++|||||||+|++.+++.++.++|.+.+|.+ ||++|+||||+|+|++|+.
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~-vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDV-LIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCE-EEEECCChHHHHHHHHHHH
Confidence 566799999999999998888999999999999999999999999999999998888754 9999999999999999999
Q ss_pred cCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHHh
Q 023565 91 RGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQD 170 (280)
Q Consensus 91 ~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (280)
+|++|+||||+++++.|+++++.|||+|+.++...+++++.+.+++++++. +.+|++||+|+.++..||.++++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 999999999999999999999999999999986556788888999998887 4468999999999877899999999999
Q ss_pred hCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCcccCcccCCCCccccccccCCeEEEeCH
Q 023565 171 SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVITVSH 250 (280)
Q Consensus 171 ~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~~~V~d 250 (280)
+++++|+||+|+|+||+++|++.++|+.+|++|||+|||.+++.+.+ ..+++.+..|..+....+|+++.|+|
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d 232 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG-------IRRWPTEYLPGIFDASLVDRVLDIHQ 232 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC-------CCCCCCCcCCcccChhhCcEEEEECH
Confidence 97689999999999999999999999999999999999999876431 12333344455556778999999999
Q ss_pred HHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 251 KIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 251 ~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
+|++++++.|++.+|++ .+++++++
T Consensus 233 ~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~ 264 (290)
T TIGR01138 233 RDAENTMRELAVREGIFCGVSSGGAVAAALRL 264 (290)
T ss_pred HHHHHHHHHHHHHhCceEcHhHHHHHHHHHHH
Confidence 99999999999987776 56666653
No 11
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=9.1e-57 Score=409.86 Aligned_cols=268 Identities=41% Similarity=0.669 Sum_probs=233.2
Q ss_pred hHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023565 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (280)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~ 86 (280)
++++++..+++|||++++++++..|++||+|+|++|||||||+|++.+++.+++++|.+.+|.+ ||++|+||||+|+|+
T Consensus 3 ~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~-vv~aSsGN~g~alA~ 81 (330)
T PRK10717 3 IFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGT-IVEGTAGNTGIGLAL 81 (330)
T ss_pred hhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCE-EEEeCCcHHHHHHHH
Confidence 4788999999999999999999888999999999999999999999999999999998888755 999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC------CHHHHHHHHHHHHHhC-CCeEEcCCCCCCccHHHH
Q 023565 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL------RFEEILEKGEEILKKT-PDGYLLRQFENPANPKIH 159 (280)
Q Consensus 87 ~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~------~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~g 159 (280)
+|+.+|++|+||||+++++.|+++++.|||+|+.++... ..+.+.+.++++.++. .+.+|++||+||.++..|
T Consensus 82 ~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g 161 (330)
T PRK10717 82 VAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAH 161 (330)
T ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHH
Confidence 999999999999999999999999999999999998531 1223334444444443 268999999999987789
Q ss_pred HHhHHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc---CCC---CCCcccCcccCCCC
Q 023565 160 YETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN---GGQ---RGKHLIQGIGAGII 233 (280)
Q Consensus 160 ~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~---~g~---~~~~~~~glg~~~~ 233 (280)
|.|+++||++|++.++|+||+|+|+||+++|++.++|+.+|+++||+|||++++.+. .+. ...+.+++++.+..
T Consensus 162 ~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~ 241 (330)
T PRK10717 162 YETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRI 241 (330)
T ss_pred HHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcC
Confidence 999999999999767999999999999999999999999999999999999986432 222 24578899998877
Q ss_pred ccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 234 PSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 234 ~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
++.+....+|+++.|+|+|+++++++|++.+|++ +|++++++
T Consensus 242 ~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~laa~~~l 290 (330)
T PRK10717 242 TANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRL 290 (330)
T ss_pred CcccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHHHHHHHH
Confidence 7777777899999999999999999999888775 77888775
No 12
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=1.6e-56 Score=414.21 Aligned_cols=268 Identities=31% Similarity=0.547 Sum_probs=230.0
Q ss_pred hHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023565 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (280)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~ 86 (280)
....+.+.+++|||+++++++...|.+||+|+|++|||||||||++.+++.++.++|.+.++.. |+++||||||+|+|+
T Consensus 43 ~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~-VveaSSGN~g~alA~ 121 (423)
T PLN02356 43 PRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGV-VTEGSAGSTAISLAT 121 (423)
T ss_pred hhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCE-EEEeCCHHHHHHHHH
Confidence 4566888999999999999998888999999999999999999999999999999998877755 888999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC-----CCH-HHHH---HHHHHHHHh-----------------
Q 023565 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA-----LRF-EEIL---EKGEEILKK----------------- 140 (280)
Q Consensus 87 ~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~-----~~~-~~~~---~~a~~~~~~----------------- 140 (280)
+|+.+|++|+||||++++++|++.|+.|||+|+.+++. .++ ..+. +.+.+++++
T Consensus 122 ~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~ 201 (423)
T PLN02356 122 VAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNG 201 (423)
T ss_pred HHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 99999999999999999999999999999999999641 122 1111 234444433
Q ss_pred ---------------CCCeEEcCCCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEE
Q 023565 141 ---------------TPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVY 205 (280)
Q Consensus 141 ---------------~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vi 205 (280)
.++.+|++||+|+.|+.+|+..+|+||++|++++||+||+|+||||+++|+++++|+++|++|||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVi 281 (423)
T PLN02356 202 CISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCF 281 (423)
T ss_pred ccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEE
Confidence 14678999999999977776667999999997689999999999999999999999999999999
Q ss_pred EEeCCCCcccc-------------CCC----CCCcccCcccCCCCccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-
Q 023565 206 GVEPSESAVLN-------------GGQ----RGKHLIQGIGAGIIPSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL- 267 (280)
Q Consensus 206 gVe~~~~~~~~-------------~g~----~~~~~~~glg~~~~~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~- 267 (280)
+|||.+++.+. .|+ +.+++++|++.+..|+.+..+.+|+++.|+|+|+++++|+|++.+|++
T Consensus 282 gVep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~v 361 (423)
T PLN02356 282 LIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFV 361 (423)
T ss_pred EEecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeE
Confidence 99999886331 222 236789999998888888888999999999999999999999887776
Q ss_pred ------hhhhHHhh
Q 023565 268 ------SFQKKITY 275 (280)
Q Consensus 268 ------~~~~~~~~ 275 (280)
+++++++.
T Consensus 362 g~Ssaa~laaa~~l 375 (423)
T PLN02356 362 GSSSAMNCVGAVRV 375 (423)
T ss_pred eECHHHHHHHHHHH
Confidence 67777664
No 13
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=3.8e-56 Score=399.29 Aligned_cols=259 Identities=51% Similarity=0.852 Sum_probs=232.7
Q ss_pred CCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcE
Q 023565 16 GNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNL 95 (280)
Q Consensus 16 ~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~ 95 (280)
|+|||++++++++..|.+||+|+|++|||||||+|++.+++.++.++|.+++|. +|+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~-~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGT-TIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHHHHcCCeE
Confidence 689999999999888899999999999999999999999999999998776664 4999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHHhhCC
Q 023565 96 IIVMPSTCSMERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG 173 (280)
Q Consensus 96 ~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~ 173 (280)
+||||+++++.|+++++.+||+|+.++... +.+++.+.+++++++.++++|++||+||.+++.|++|+++||++|++.
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998642 347888889988887657899999999999854445999999999966
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCcccCcccCCCCccccccccCCeEEEeCHHHH
Q 023565 174 KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVITVSHKID 253 (280)
Q Consensus 174 ~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~~~V~d~ea 253 (280)
.||+||+|+|+||+++|++.++|++.|+++||+|||++++++.......+.++|++.+..++.+...++|+++.|+|+|+
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~ 239 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEA 239 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHH
Confidence 89999999999999999999999999999999999999988755555677889999887777777789999999999999
Q ss_pred HHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 254 LHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 254 ~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
+++++.|++.+|++ ++++++++
T Consensus 240 ~~a~~~l~~~~gi~~epssa~a~a~~~~~ 268 (291)
T cd01561 240 FAMARRLAREEGLLVGGSSGAAVAAALKL 268 (291)
T ss_pred HHHHHHHHHHhCeeEcccHHHHHHHHHHH
Confidence 99999999887775 67777664
No 14
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=4.4e-57 Score=420.23 Aligned_cols=263 Identities=21% Similarity=0.312 Sum_probs=232.3
Q ss_pred ccchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023565 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (280)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~ 82 (280)
++..+++++...+++|||+++++|++..|++||+|+|++|||||||+|++.+.+..+.+++. .++||++|+||||+
T Consensus 6 ~i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~ 81 (403)
T PRK08526 6 KIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQ 81 (403)
T ss_pred HHHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHH
Confidence 45678899999999999999999998889999999999999999999999999998876543 24599999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 023565 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (280)
Q Consensus 83 alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (280)
++|++|+.+|++|+||||+++|..|++.++.|||+|++++ .+++++.+.+++++++. +++|++||+||.++ +||+|
T Consensus 82 avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g--~~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~i-~G~gt 157 (403)
T PRK08526 82 GVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKG--DNYDEAYAFALEYAKEN-NLTFIHPFEDEEVM-AGQGT 157 (403)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEeeCCCCCHHHH-hhhHH
Confidence 9999999999999999999999999999999999999998 46899999999998886 78999999999887 79999
Q ss_pred HHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----CCcccCcccCCCC
Q 023565 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR-----GKHLIQGIGAGII 233 (280)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg~~~~ 233 (280)
+++||++|+ +++|+||+|+|+||+++|++.++|+.+|++|||||||++++++. .|++ ..++++|+++..+
T Consensus 158 ia~EI~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~ 236 (403)
T PRK08526 158 IALEMLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDA 236 (403)
T ss_pred HHHHHHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCC
Confidence 999999999 47999999999999999999999999999999999999998652 3332 3567788876532
Q ss_pred -c--cccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHh
Q 023565 234 -P--SVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKIT 274 (280)
Q Consensus 234 -~--~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~ 274 (280)
| +.+.++++|+++.|+|+|+.+++++|++.+|++ ++|++++
T Consensus 237 ~~~~~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~ 287 (403)
T PRK08526 237 SPINLAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLH 287 (403)
T ss_pred CHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHh
Confidence 2 334468999999999999999999998887775 5666654
No 15
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-57 Score=397.35 Aligned_cols=264 Identities=60% Similarity=0.952 Sum_probs=250.5
Q ss_pred cchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 023565 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (280)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~a 83 (280)
...+.+...+.+|+|||+.+++....+.++||+|+|.+||+||.|||.++.|+.+|+.+|.+.||.+++++.||||+|.+
T Consensus 39 ~~~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGig 118 (362)
T KOG1252|consen 39 RILILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIG 118 (362)
T ss_pred hhhhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHH
Confidence 34566778899999999999999777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHH---HHHHHHHHHHhCCCeEEcCCCCCCccHHHHH
Q 023565 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEE---ILEKGEEILKKTPDGYLLRQFENPANPKIHY 160 (280)
Q Consensus 84 lA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (280)
||++|+..|+||+++||+..+.+|+..|++|||+|++++....++. ++..+.++..+.|+.+.++||.||.|+.+||
T Consensus 119 LA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy 198 (362)
T KOG1252|consen 119 LAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHY 198 (362)
T ss_pred HHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCccccc
Confidence 9999999999999999999999999999999999999997655555 8899999999999999999999999999999
Q ss_pred HhHHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCC--cccCcccCCCCccccc
Q 023565 161 ETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGK--HLIQGIGAGIIPSVLD 238 (280)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~--~~~~glg~~~~~~~~~ 238 (280)
.+++.|||+|+.++||.+|.++|||||++|+.+++|+.+|+++|++|||.+|..+..+.+.+ +.++|||.++.|..++
T Consensus 199 ~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld 278 (362)
T KOG1252|consen 199 ETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLD 278 (362)
T ss_pred ccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccc
Confidence 99999999999889999999999999999999999999999999999999998888777777 8899999999999999
Q ss_pred cccCCeEEEeCHHHHHHHHHHhhhcCCcc
Q 023565 239 IDILDEVITVSHKIDLHLLHFCCCSSPTL 267 (280)
Q Consensus 239 ~~~vd~~~~V~d~ea~~~~~~la~~eG~~ 267 (280)
...+|+.+.++++|++.+.|+|+.+||++
T Consensus 279 ~~~vd~~~~~~~d~A~~~Ar~La~eeGll 307 (362)
T KOG1252|consen 279 TKLVDEVLKVSSDEAIEMARRLALEEGLL 307 (362)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHhhCee
Confidence 99999999999999999999999999987
No 16
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=3.6e-56 Score=416.21 Aligned_cols=264 Identities=23% Similarity=0.375 Sum_probs=232.4
Q ss_pred ccchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023565 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (280)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~ 82 (280)
+...+++++...+++|||+++++|++..|++||+|+|++|||||||+|++.+++.++.+++. ..+||++|+||||+
T Consensus 8 ~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 83 (404)
T PRK08198 8 DIEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQ 83 (404)
T ss_pred HHHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHH
Confidence 34568899999999999999999998888999999999999999999999999998875543 35699999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 023565 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (280)
Q Consensus 83 alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (280)
++|++|+.+|++|+||||++++..|+++++.|||+|+.++ .+++++.+.+++++++. +++|++||+||.++ +||+|
T Consensus 84 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~--~~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~~-~g~~t 159 (404)
T PRK08198 84 GVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHG--DVYDEALAKAQELAEET-GATFVHPFDDPDVI-AGQGT 159 (404)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEecCCCCCccHH-HHHHH
Confidence 9999999999999999999999999999999999999998 46899999999998886 78999999999987 79999
Q ss_pred HHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----CCcccCcccCCC-
Q 023565 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR-----GKHLIQGIGAGI- 232 (280)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg~~~- 232 (280)
+++||++|+ +++|+||+|+|+||+++|++.++|+.+|++|||||||++++++. .|++ .++.++|++...
T Consensus 160 ~a~EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~ 238 (404)
T PRK08198 160 IGLEILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRP 238 (404)
T ss_pred HHHHHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCc
Confidence 999999999 57999999999999999999999999999999999999998653 3433 245566766432
Q ss_pred --CccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 233 --IPSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 233 --~~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
.++.+.++++|+++.|+|+|+.+++++|++.+|++ .+|++.++
T Consensus 239 ~~~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~ 290 (404)
T PRK08198 239 GDLTFEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSG 290 (404)
T ss_pred CHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhc
Confidence 34455678999999999999999999998866554 67777654
No 17
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=6.9e-56 Score=421.32 Aligned_cols=259 Identities=26% Similarity=0.354 Sum_probs=229.1
Q ss_pred hhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 023565 10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (280)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~ 89 (280)
++...+.+|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.++.. .++||++|+||||+++|++|+
T Consensus 30 ~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA~ 105 (521)
T PRK12483 30 RVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAAA 105 (521)
T ss_pred HHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999999987664322 234999999999999999999
Q ss_pred HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHH
Q 023565 90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ 169 (280)
Q Consensus 90 ~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (280)
.+|++|+||||+++|+.|+..++.|||+|++++ .+++++.+.+++++++. +++|++||+||.++ +||+|+++||++
T Consensus 106 ~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g--~~~d~a~~~A~~la~e~-g~~~v~pfdd~~vi-aGqgTig~EI~e 181 (521)
T PRK12483 106 RLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHG--ESFPDALAHALKLAEEE-GLTFVPPFDDPDVI-AGQGTVAMEILR 181 (521)
T ss_pred HhCCCEEEEECCCCCHHHHHHHHHCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCeeeCCCCChHHH-HHHHHHHHHHHH
Confidence 999999999999999999999999999999998 46899999999999887 78999999999998 799999999999
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----CCcccCcccCCC---Ccccc
Q 023565 170 DSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR-----GKHLIQGIGAGI---IPSVL 237 (280)
Q Consensus 170 q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg~~~---~~~~~ 237 (280)
|+++.||+||+|+|+||+++|++.++|.++|++|||||||++++++. .|++ ..+.++|+++.. .++.+
T Consensus 182 Q~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~ 261 (521)
T PRK12483 182 QHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFEL 261 (521)
T ss_pred HhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHH
Confidence 99656999999999999999999999999999999999999998764 3333 245678887643 34556
Q ss_pred ccccCCeEEEeCHHHHHHHHHHhhhcCC-------cchhhhHHhhh
Q 023565 238 DIDILDEVITVSHKIDLHLLHFCCCSSP-------TLSFQKKITYN 276 (280)
Q Consensus 238 ~~~~vd~~~~V~d~ea~~~~~~la~~eG-------~~~~~~~~~~~ 276 (280)
.++++|+++.|+|+|+.++++.|++.+| ++++|++++|.
T Consensus 262 ~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~ 307 (521)
T PRK12483 262 CRHYVDEVVTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKYA 307 (521)
T ss_pred HHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHH
Confidence 6889999999999999999999977654 55888888764
No 18
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=1.8e-55 Score=417.58 Aligned_cols=267 Identities=42% Similarity=0.695 Sum_probs=235.1
Q ss_pred HHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 023565 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (280)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~ 87 (280)
++++...+++|||++++++++..+.+||+|+|++|||||||+|++.+++.++.++|.+.+|. +||++|+||||+|+|++
T Consensus 2 ~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~-~vv~~ssGN~g~alA~~ 80 (454)
T TIGR01137 2 RDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGD-TIIEPTSGNTGIGLALV 80 (454)
T ss_pred ccchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCC-EEEEeCCcHHHHHHHHH
Confidence 45678889999999999999888889999999999999999999999999999999988874 49999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHH---HHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHH
Q 023565 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFE---EILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG 164 (280)
Q Consensus 88 a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 164 (280)
|+.+|++|+||||+++++.|+..++.|||+|+.++....++ ...+.+.+++++.++.+|++||+|+.++.+||.+++
T Consensus 81 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~ 160 (454)
T TIGR01137 81 AAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTG 160 (454)
T ss_pred HHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhH
Confidence 99999999999999999999999999999999998532222 335667777776556788999999999878999999
Q ss_pred HHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCC------CCCcccCcccCCCCccccc
Q 023565 165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQ------RGKHLIQGIGAGIIPSVLD 238 (280)
Q Consensus 165 ~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~------~~~~~~~glg~~~~~~~~~ 238 (280)
+||++|+++.||+||+|+||||+++|++.++|+.+|++|||+|||++++.. .+. ..++.++|++.+..|+.+.
T Consensus 161 ~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (454)
T TIGR01137 161 PEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILA-QPENLNKTGRTPYKVEGIGYDFIPTVLD 239 (454)
T ss_pred HHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCccc-CCCcccCCCCCCccCCCCCCCCCCCcCC
Confidence 999999976899999999999999999999999999999999999998633 221 1245678888776777777
Q ss_pred cccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhhh
Q 023565 239 IDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITYN 276 (280)
Q Consensus 239 ~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~~ 276 (280)
.+++|+++.|+|+|++++++.|++.+|++ ++++++++.
T Consensus 240 ~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~~ 284 (454)
T TIGR01137 240 RKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKAA 284 (454)
T ss_pred chhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHHH
Confidence 88999999999999999999999999988 778887753
No 19
>PLN02970 serine racemase
Probab=100.00 E-value=7.8e-56 Score=402.99 Aligned_cols=255 Identities=20% Similarity=0.267 Sum_probs=224.7
Q ss_pred cchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 023565 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (280)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~a 83 (280)
...+.+++...+++|||++++++++..|.+||+|+|++|||||||||++.+++.++.+++. .++||++|+||||+|
T Consensus 14 i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~a 89 (328)
T PLN02970 14 IREARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAA 89 (328)
T ss_pred HHHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHH
Confidence 3456788999999999999999998888999999999999999999999999999875553 245999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhH
Q 023565 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (280)
Q Consensus 84 lA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (280)
+|++|+.+|++|+||||+++++.|+..|+.|||+|+.++. +++++.+.+++++++. +++|++||+|+.++ .||+|+
T Consensus 90 lA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~~-g~~~~~~~~n~~~~-~g~~t~ 165 (328)
T PLN02970 90 LALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQET-GAVLIHPYNDGRVI-SGQGTI 165 (328)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcchh-hehHHH
Confidence 9999999999999999999999999999999999999994 5788888899988774 78999999999987 699999
Q ss_pred HHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----CCcccCcccCCC--
Q 023565 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR-----GKHLIQGIGAGI-- 232 (280)
Q Consensus 164 ~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg~~~-- 232 (280)
++||++|++ .||+||+|+|+||+++|++.++|+.+|++|||+|||.+++++. .|++ .++++++++.+.
T Consensus 166 g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~ 244 (328)
T PLN02970 166 ALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGD 244 (328)
T ss_pred HHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCH
Confidence 999999995 7999999999999999999999999999999999999998653 2322 345667776542
Q ss_pred CccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc
Q 023565 233 IPSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL 267 (280)
Q Consensus 233 ~~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~ 267 (280)
.++...++.+|+++.|+|+|+++++++|++.+|++
T Consensus 245 ~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ 279 (328)
T PLN02970 245 LTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVV 279 (328)
T ss_pred HHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcE
Confidence 12344577899999999999999999999988885
No 20
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=5.6e-56 Score=414.53 Aligned_cols=254 Identities=22% Similarity=0.322 Sum_probs=228.2
Q ss_pred chhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHH
Q 023565 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGL 84 (280)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~al 84 (280)
..+++++...+++|||+++++|++..|++||+|+|++|||||||+|++.+++..+.+.+. ..+||++|+||||+|+
T Consensus 13 ~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~a~ 88 (406)
T PRK06382 13 LYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQGV 88 (406)
T ss_pred HHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHHHH
Confidence 467889999999999999999998889999999999999999999999999988776543 2349999999999999
Q ss_pred HHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHH
Q 023565 85 AFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTG 164 (280)
Q Consensus 85 A~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 164 (280)
|++|+.+|++|+||||+++++.|++.++.|||+|+.++. +++++.+.+++++++. +++|++||+|+.++ +||+|++
T Consensus 89 A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~i-~g~~t~~ 164 (406)
T PRK06382 89 AYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWVI-SGQGTIG 164 (406)
T ss_pred HHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHHH-HHHHHHH
Confidence 999999999999999999999999999999999999984 5889999999998886 78999999999987 6999999
Q ss_pred HHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccc----cCCCC-----CCcccCcccCCC---
Q 023565 165 PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVL----NGGQR-----GKHLIQGIGAGI--- 232 (280)
Q Consensus 165 ~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~----~~g~~-----~~~~~~glg~~~--- 232 (280)
+||++|+ ++||+||+|+|+||+++|++.++|+.+|++|||||||++++++ ..+++ .+++++|++.+.
T Consensus 165 ~Ei~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~ 243 (406)
T PRK06382 165 LEIMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGD 243 (406)
T ss_pred HHHHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccH
Confidence 9999999 5899999999999999999999999999999999999999875 23433 356788888754
Q ss_pred CccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc
Q 023565 233 IPSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL 267 (280)
Q Consensus 233 ~~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~ 267 (280)
.++.+.++++|+++.|+|+|+++++++|++.+|++
T Consensus 244 ~~~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~ 278 (406)
T PRK06382 244 LTFDIAKNYVDDIVTVTEESVSKAIYKLFEREKIV 278 (406)
T ss_pred HHHHHHHHcCCEEEEECHHHHHHHHHHHHHHcCce
Confidence 24456678999999999999999999999988875
No 21
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=1.5e-55 Score=400.37 Aligned_cols=255 Identities=22% Similarity=0.301 Sum_probs=225.6
Q ss_pred cchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 023565 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (280)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~a 83 (280)
+..+++++..++++|||++++++++..|.+||+|+|++|||||||+|++.+++.++.+++. .++||++|+||||+|
T Consensus 6 i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~a 81 (322)
T PRK07476 6 IYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGRA 81 (322)
T ss_pred HHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHHH
Confidence 4578899999999999999999998888999999999999999999999999999988875 234999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhH
Q 023565 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (280)
Q Consensus 84 lA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (280)
+|++|+.+|++|+||||+++++.|+..++.|||+|+.++. +++++.+.+.+++++. +++|++||+||.++ +||+|+
T Consensus 82 lA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~-~g~~t~ 157 (322)
T PRK07476 82 LAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRII-AGQGTI 157 (322)
T ss_pred HHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCccee-echhHH
Confidence 9999999999999999999999999999999999999984 5788889999988876 67999999999998 799999
Q ss_pred HHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----CCcccCcccCCC--
Q 023565 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR-----GKHLIQGIGAGI-- 232 (280)
Q Consensus 164 ~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg~~~-- 232 (280)
++||++|++ ++|+||+|+|+||+++|++.++|..+|++|||+|||++++++. .+++ ..+++++++.+.
T Consensus 158 ~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~ 236 (322)
T PRK07476 158 GLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGL 236 (322)
T ss_pred HHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccC
Confidence 999999994 7999999999999999999999999999999999999887542 3332 345566664322
Q ss_pred ---CccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc
Q 023565 233 ---IPSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL 267 (280)
Q Consensus 233 ---~~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~ 267 (280)
.++.+.++.+|+++.|+|+|+++++++|++.+|++
T Consensus 237 ~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ 274 (322)
T PRK07476 237 DNRYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLV 274 (322)
T ss_pred CcHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCce
Confidence 23445667899999999999999999999988864
No 22
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=1.8e-55 Score=407.18 Aligned_cols=259 Identities=19% Similarity=0.248 Sum_probs=223.5
Q ss_pred cCCCcceeccccccCCC--------ceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 023565 15 IGNTPMVYLNNVVDGCV--------ARIAAKLETMEP-CSSVKDRIAYSMIKD-----AEDKGLITPGK----------- 69 (280)
Q Consensus 15 ~~~TPl~~~~~l~~~~g--------~~l~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~g~----------- 69 (280)
+++|||++++++++.+| .+||+|+|++|| |||||||++.+++.. +.+.|.+.||.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 99999999999987654 799999999999 999999999998864 77888888875
Q ss_pred -----eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCe
Q 023565 70 -----TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDG 144 (280)
Q Consensus 70 -----~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (280)
.+||++||||||+|+|++|+.+|++|+||||+++++.|++.|+.|||+|+.++ .+++++.+.+++++++.++.
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~--~~~~~a~~~a~~la~~~~~~ 207 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYE--TDYSKAVEEGRKQAAADPMC 207 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEEC--CCHHHHHHHHHHHHHHCCCe
Confidence 47999999999999999999999999999999999999999999999999998 46889999999999887677
Q ss_pred EEcCCCCCCccHHHHHHhHHHHHHHhhCC---C-----CCEEEEecCCchhHHHHHHHHHhc-CCCcEEEEEeCCCCccc
Q 023565 145 YLLRQFENPANPKIHYETTGPEIWQDSGG---K-----VDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPSESAVL 215 (280)
Q Consensus 145 ~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~---~-----~d~vv~~vG~Gg~~~Gi~~~~k~~-~p~~~vigVe~~~~~~~ 215 (280)
+|++|++++..+ +||+|+++||++|+++ + ||+||+|+|+||+++|+++++|+. .|+++||+|||++++++
T Consensus 208 ~~v~~~n~~~~i-aG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~ 286 (404)
T cd06447 208 YFVDDENSRDLF-LGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCM 286 (404)
T ss_pred EeCCCCCchhHH-hhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHH
Confidence 899997666555 8999999999999952 3 458999999999999999999997 79999999999998754
Q ss_pred c----CCCC-----------CCcccCcccCCCC---ccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhh
Q 023565 216 N----GGQR-----------GKHLIQGIGAGII---PSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQ 270 (280)
Q Consensus 216 ~----~g~~-----------~~~~~~glg~~~~---~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~ 270 (280)
. .+.+ ..++++||+++.. ++.+.++.+|+++.|+|+|+++++++|++.+|++ +++
T Consensus 287 ~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lA 366 (404)
T cd06447 287 LLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFT 366 (404)
T ss_pred HHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHH
Confidence 2 2211 3467888887653 2344568899999999999999999999877665 778
Q ss_pred hHHhhh
Q 023565 271 KKITYN 276 (280)
Q Consensus 271 ~~~~~~ 276 (280)
+++++.
T Consensus 367 Al~~~~ 372 (404)
T cd06447 367 GPAQVL 372 (404)
T ss_pred HHHHHH
Confidence 887763
No 23
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=1.8e-55 Score=410.86 Aligned_cols=264 Identities=22% Similarity=0.318 Sum_probs=229.1
Q ss_pred cchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 023565 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (280)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~a 83 (280)
...+.+++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.+... ..+||++|+||||++
T Consensus 3 i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~a 78 (409)
T TIGR02079 3 IEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQG 78 (409)
T ss_pred HHHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHH
Confidence 4567899999999999999999998888999999999999999999999999987543222 235999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE---EEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHH
Q 023565 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI---ILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHY 160 (280)
Q Consensus 84 lA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (280)
+|++|+.+|+||+||||+++++.|+..++.|||+| +.++ .+++++.+.+++++++. +++|++||+||.++ +||
T Consensus 79 ~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~-~g~ 154 (409)
T TIGR02079 79 FAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTFIPPFDDPRII-EGQ 154 (409)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhHh-hhh
Confidence 99999999999999999999999999999999974 4444 46899999999998886 78999999999988 799
Q ss_pred HhHHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----CCcccCcccCC
Q 023565 161 ETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR-----GKHLIQGIGAG 231 (280)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg~~ 231 (280)
+|+++||++|++..||+||+|+|+||+++|++.++|+++|++|||||||++++++. .|++ .+++++|++..
T Consensus 155 ~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~ 234 (409)
T TIGR02079 155 GTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVK 234 (409)
T ss_pred HHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCC
Confidence 99999999999656999999999999999999999999999999999999998764 3443 24677888876
Q ss_pred CCc---cccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 232 IIP---SVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 232 ~~~---~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
.++ +.+.+.++|+++.|+|+|+.+++++|++.+|++ ++|++.++
T Consensus 235 ~~g~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~ 288 (409)
T TIGR02079 235 RVGDLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERL 288 (409)
T ss_pred CCcHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhh
Confidence 543 334578999999999999999999998876665 67776654
No 24
>PLN02550 threonine dehydratase
Probab=100.00 E-value=2.5e-55 Score=419.97 Aligned_cols=259 Identities=22% Similarity=0.346 Sum_probs=228.4
Q ss_pred hhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 023565 10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (280)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~ 89 (280)
++...+.+|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++.++. .. .+||++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~-~~---~GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQ-LD---KGVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhc-CC---CCEEEECCCHHHHHHHHHHH
Confidence 566889999999999999999999999999999999999999999999875443 22 34999999999999999999
Q ss_pred HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHH
Q 023565 90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ 169 (280)
Q Consensus 90 ~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (280)
++|++|+||||+++|..|++.++.|||+|++++ .+++++.+.+++++++. +++|++||+||.++ +||+|+|+||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g--~~~dea~~~A~~la~e~-g~~fi~pfddp~vi-aGqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVG--DSYDEAQAYAKQRALEE-GRTFIPPFDHPDVI-AGQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeC--CCHHHHHHHHHHHHHhc-CCEEECCCCChHHH-HHHHHHHHHHHH
Confidence 999999999999999999999999999999998 46899999999998886 67899999999998 799999999999
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----CCcccCcccCCCC---cccc
Q 023565 170 DSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR-----GKHLIQGIGAGII---PSVL 237 (280)
Q Consensus 170 q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg~~~~---~~~~ 237 (280)
|++..+|+||+|+|+||+++|++.++|+++|++|||||||++++++. .|++ ..++++|+.+... ++.+
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i 333 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRL 333 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHH
Confidence 99656999999999999999999999999999999999999998763 3443 2356777776432 3456
Q ss_pred ccccCCeEEEeCHHHHHHHHHHhhhcC-------CcchhhhHHhhh
Q 023565 238 DIDILDEVITVSHKIDLHLLHFCCCSS-------PTLSFQKKITYN 276 (280)
Q Consensus 238 ~~~~vd~~~~V~d~ea~~~~~~la~~e-------G~~~~~~~~~~~ 276 (280)
.++++|++|.|+|+|+.++++.+++.+ |++++||+++|.
T Consensus 334 ~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~ 379 (591)
T PLN02550 334 CRELVDGVVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYC 379 (591)
T ss_pred HHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHH
Confidence 688999999999999999999997755 555889988763
No 25
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=3.2e-55 Score=397.08 Aligned_cols=262 Identities=21% Similarity=0.301 Sum_probs=228.0
Q ss_pred ccchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023565 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (280)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~ 82 (280)
+...+++++...+++|||++++++++..|.+||+|+|++|||||||||++.+++.++.+... ..+||++|+||||+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 80 (317)
T TIGR02991 5 DIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGR 80 (317)
T ss_pred HHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHH
Confidence 45678899999999999999999998888899999999999999999999999988764321 23599999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 023565 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (280)
Q Consensus 83 alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (280)
|+|++|+.+|++|+||||+++++.|++.++.|||+|+.++. +++++.+.+++++++. +++|++||+||.++ +||+|
T Consensus 81 alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~-~g~~t 156 (317)
T TIGR02991 81 ALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDIV-AGQGT 156 (317)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHH-hhHHH
Confidence 99999999999999999999999999999999999999994 5788888899988876 78999999999987 79999
Q ss_pred HHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----CCcccCccc--CC
Q 023565 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR-----GKHLIQGIG--AG 231 (280)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg--~~ 231 (280)
+++||++|+ +++|+||+|+|+||+++|+++++|+++|++|||+|||++++++. .|++ .++++++++ .+
T Consensus 157 ~a~Ei~~q~-~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~ 235 (317)
T TIGR02991 157 LGLEVVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIG 235 (317)
T ss_pred HHHHHHHhC-CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccC
Confidence 999999999 47899999999999999999999999999999999999887653 3432 345667653 22
Q ss_pred ---CCccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHH
Q 023565 232 ---IIPSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKI 273 (280)
Q Consensus 232 ---~~~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~ 273 (280)
..++.+.++++|+++.|+|+|+++++++|++.+|++ .+|++.
T Consensus 236 ~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~ 287 (317)
T TIGR02991 236 LDNRVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALL 287 (317)
T ss_pred CCCHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHH
Confidence 235666788999999999999999999998876655 566664
No 26
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=2.2e-55 Score=411.96 Aligned_cols=266 Identities=21% Similarity=0.328 Sum_probs=229.1
Q ss_pred cchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 023565 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (280)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~a 83 (280)
...+++++.+.+++|||++++++++..|++||+|+|++|||||||+|+|.+++.++.+... ..+||++|+||||++
T Consensus 12 i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~a 87 (420)
T PRK08639 12 IDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQG 87 (420)
T ss_pred HHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHH
Confidence 4567899999999999999999998888999999999999999999999999988533221 245999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC-CCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 023565 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD-SALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (280)
Q Consensus 84 lA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (280)
+|++|+.+|++|+||||+++|+.|+..++.|||+|+.+. ...+++++.+.+.+++++. +++|++||+||.++ +||+|
T Consensus 88 lA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~~-~G~~t 165 (420)
T PRK08639 88 VAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDVI-AGQGT 165 (420)
T ss_pred HHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhHh-cchhH
Confidence 999999999999999999999999999999999743322 1246899999999999886 78999999999988 79999
Q ss_pred HHHHHHHhhCCC--CCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----CCcccCcccCC
Q 023565 163 TGPEIWQDSGGK--VDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR-----GKHLIQGIGAG 231 (280)
Q Consensus 163 ~~~Ei~~q~~~~--~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg~~ 231 (280)
+++||++|++.. ||+||+|+|+||+++|++.++|+.+|++|||||||++++++. .|.+ ..+.++|++..
T Consensus 166 ig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~ 245 (420)
T PRK08639 166 VAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVA 245 (420)
T ss_pred HHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccC
Confidence 999999999655 999999999999999999999999999999999999998753 2433 34667888765
Q ss_pred CC---ccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 232 II---PSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 232 ~~---~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
.+ ++.+.++++|+++.|+|+|+.+++++|++.+|++ ++|++.++
T Consensus 246 ~~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~ 299 (420)
T PRK08639 246 RVGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELY 299 (420)
T ss_pred CccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhh
Confidence 44 3445678999999999999999999998877665 66777664
No 27
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=6.9e-55 Score=396.07 Aligned_cols=263 Identities=19% Similarity=0.241 Sum_probs=227.9
Q ss_pred ccchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023565 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (280)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~ 82 (280)
+...+++++...+++|||++++++++..|.+||+|+|++|||||||+|++.+++.++.+++... .+||++|+||||+
T Consensus 7 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~ 83 (322)
T PRK06110 7 ELEAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQ 83 (322)
T ss_pred HHHHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHH
Confidence 3456788999999999999999999888899999999999999999999999999998876533 3499999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 023565 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (280)
Q Consensus 83 alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (280)
|+|++|+.+|++|+||||+++++.|+++++.|||+|+.++ .+++++.+.+.++++++ +++|++|| ||.++ .||.|
T Consensus 84 alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~--~~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~~-~G~~t 158 (322)
T PRK06110 84 SVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHG--EDFQAAREEAARLAAER-GLHMVPSF-HPDLV-RGVAT 158 (322)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEEcCCC-CChHH-hccch
Confidence 9999999999999999999999999999999999999997 46888989999988876 78999998 66766 69999
Q ss_pred HHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----CCcccCcccCCCC
Q 023565 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR-----GKHLIQGIGAGII 233 (280)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg~~~~ 233 (280)
+++||++|++ ++|+||+|+|+||+++|++.++|+.+|++|||+|||++++++. .+++ ..+++++++....
T Consensus 159 ~~~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~ 237 (322)
T PRK06110 159 YALELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTP 237 (322)
T ss_pred HHHHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCc
Confidence 9999999994 7999999999999999999999999999999999999988653 3432 2456677765432
Q ss_pred -c--cccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHh
Q 023565 234 -P--SVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKIT 274 (280)
Q Consensus 234 -~--~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~ 274 (280)
| +.+.++++|+++.|+|+|+++++++|++.+|++ +|+++++
T Consensus 238 ~~~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~ 288 (322)
T PRK06110 238 DPEALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQ 288 (322)
T ss_pred cHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHh
Confidence 2 233468999999999999999999999877755 5666655
No 28
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=5.1e-55 Score=396.94 Aligned_cols=264 Identities=20% Similarity=0.291 Sum_probs=227.7
Q ss_pred ccchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023565 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (280)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~ 82 (280)
....+++++..++++|||++++++++..|.+||+|+|++|||||||||++.+++.++.+++. .++||++|+||||+
T Consensus 10 ~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 85 (321)
T PRK07048 10 DVAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQ 85 (321)
T ss_pred HHHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHH
Confidence 34578899999999999999999988788999999999999999999999999998875432 34599999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 023565 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (280)
Q Consensus 83 alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (280)
|+|++|+.+|+++++|||+++++.|+.+++.|||+|+.++. +++++.+.+++++++. +++|++||+|+.++ +||+|
T Consensus 86 alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~--~~~~~~~~a~~l~~~~-g~~~~~~~~~~~~~-~g~~t 161 (321)
T PRK07048 86 AIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR--YTEDREEIGRRLAEER-GLTLIPPYDHPHVI-AGQGT 161 (321)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCCcchh-hccch
Confidence 99999999999999999999999999999999999999994 4677888888888876 78999999999887 79999
Q ss_pred HHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccc----cCCCC-----CCcccCcccCCC-
Q 023565 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVL----NGGQR-----GKHLIQGIGAGI- 232 (280)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~----~~g~~-----~~~~~~glg~~~- 232 (280)
+++||++|++ +||+||+|+|+||+++|++.++|+.+|+++||+|||++++++ ..|+. ..++++++....
T Consensus 162 ~~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~ 240 (321)
T PRK07048 162 AAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHL 240 (321)
T ss_pred HHHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCc
Confidence 9999999994 899999999999999999999999999999999999998753 23332 234556654322
Q ss_pred --CccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 233 --IPSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 233 --~~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
..+...++++|+++.|+|+|+++++++|++.+|++ +|++++++
T Consensus 241 ~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~ 292 (321)
T PRK07048 241 GNYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRG 292 (321)
T ss_pred cHHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhC
Confidence 12334568999999999999999999999888876 66666653
No 29
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=3.9e-55 Score=408.62 Aligned_cols=264 Identities=21% Similarity=0.299 Sum_probs=232.8
Q ss_pred ccchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023565 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (280)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~ 82 (280)
...++.+++..++++|||++++++++..|.+||+|+|++|||||||||++.+++.++.++.. ..+||++|+||||+
T Consensus 9 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 84 (403)
T PRK07334 9 DIRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQ 84 (403)
T ss_pred HHHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHH
Confidence 34578899999999999999999998888999999999999999999999999998754432 23499999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 023565 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (280)
Q Consensus 83 alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (280)
|+|++|+.+|++|+||||+++++.|+.+++.|||+|+.++ .+++++.+.+++++++. +++|++||+||.++ +||+|
T Consensus 85 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~--~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~-~g~~t 160 (403)
T PRK07334 85 GVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHG--ETLDEARAHARELAEEE-GLTFVHPYDDPAVI-AGQGT 160 (403)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEEC--cCHHHHHHHHHHHHHhc-CCEecCCCCCHHHH-HhHHH
Confidence 9999999999999999999999999999999999999997 46889999999998876 78999999999987 79999
Q ss_pred HHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccC---CC----CCCcccCcccCC---C
Q 023565 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG---GQ----RGKHLIQGIGAG---I 232 (280)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~---g~----~~~~~~~glg~~---~ 232 (280)
+++||++|+ ++||+||+|+|+||+++|++.++|+++|++|||+|||++++++.. +. ..++.++|++.+ .
T Consensus 161 ~~~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 239 (403)
T PRK07334 161 VALEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQ 239 (403)
T ss_pred HHHHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccH
Confidence 999999999 579999999999999999999999999999999999999987632 21 134678888854 3
Q ss_pred CccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 233 IPSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 233 ~~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
.|+.++++++|+++.|+|+|+++++++|++.+|++ .+++++++
T Consensus 240 ~~~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~ 289 (403)
T PRK07334 240 LTLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAY 289 (403)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhC
Confidence 45667788999999999999999999999988775 56666553
No 30
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=1.1e-54 Score=413.09 Aligned_cols=259 Identities=25% Similarity=0.355 Sum_probs=229.3
Q ss_pred HhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023565 9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (280)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 88 (280)
.++.+.+.+|||+++++|++.+|.+||+|+|++||+||||+|+|.+++..+.++.. ..+||++|+||||+++|++|
T Consensus 9 ~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa 84 (499)
T TIGR01124 9 ARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSA 84 (499)
T ss_pred hHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHH
Confidence 47888999999999999999899999999999999999999999999988743322 24599999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHH
Q 023565 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW 168 (280)
Q Consensus 89 ~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (280)
+++|++|+||||+++|..|++.++.|||+|++++ .+++++.+.+++++++. +++|++||+||.++ +||+|+|+||+
T Consensus 85 ~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g--~~~d~a~~~a~~la~~~-g~~~i~p~~~~~~i-~G~gtig~EI~ 160 (499)
T TIGR01124 85 ARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHG--ANFDDAKAKAIELSQEK-GLTFIHPFDDPLVI-AGQGTLALEIL 160 (499)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeC--cCHHHHHHHHHHHHHhc-CCEeeCCCCChHHH-HhhHHHHHHHH
Confidence 9999999999999999999999999999999998 46899999999998886 78999999999998 79999999999
Q ss_pred HhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----CCcccCcccCCCC---ccc
Q 023565 169 QDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR-----GKHLIQGIGAGII---PSV 236 (280)
Q Consensus 169 ~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg~~~~---~~~ 236 (280)
+|++.++|+||+|+||||+++|++.++|+.+|++|||||||++++++. .|++ ..+.++|+++..+ ++.
T Consensus 161 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~ 240 (499)
T TIGR01124 161 RQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFR 240 (499)
T ss_pred HhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHH
Confidence 999657999999999999999999999999999999999999998653 3433 3456788876543 455
Q ss_pred cccccCCeEEEeCHHHHHHHHHHhhhc-------CCcchhhhHHhh
Q 023565 237 LDIDILDEVITVSHKIDLHLLHFCCCS-------SPTLSFQKKITY 275 (280)
Q Consensus 237 ~~~~~vd~~~~V~d~ea~~~~~~la~~-------eG~~~~~~~~~~ 275 (280)
+.++++|+++.|+|+|+.++++.|++. +|++++||+.+|
T Consensus 241 ~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~ 286 (499)
T TIGR01124 241 LCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKY 286 (499)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHh
Confidence 677899999999999999999999664 555688998887
No 31
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=7.7e-55 Score=396.55 Aligned_cols=254 Identities=25% Similarity=0.352 Sum_probs=222.3
Q ss_pred cchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 023565 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (280)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~a 83 (280)
...+++++.+.+++|||+++++|++..|++||+|+|++|||||||||++.+++.++.+... ..+||++|+||||+|
T Consensus 14 i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~a 89 (333)
T PRK08638 14 IIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQG 89 (333)
T ss_pred HHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHH
Confidence 4567899999999999999999998888899999999999999999999999998765332 235999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhH
Q 023565 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (280)
Q Consensus 84 lA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (280)
+|++|+.+|++|+||||+++++.|+.+++.|||+|+.++ .+++++.+.+++++++. +.+|++||+||.++ +||+|+
T Consensus 90 lA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~--~~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~~-~g~~t~ 165 (333)
T PRK08638 90 VALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHG--DNFNDTIAKVEEIVEEE-GRTFIPPYDDPKVI-AGQGTI 165 (333)
T ss_pred HHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEEC--cCHHHHHHHHHHHHHhc-CCEEcCcCCCcchh-ccccHH
Confidence 999999999999999999999999999999999999998 46888999999998886 78999999999987 799999
Q ss_pred HHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCCC-----CcccCcccCCCCc
Q 023565 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQRG-----KHLIQGIGAGIIP 234 (280)
Q Consensus 164 ~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~~-----~~~~~glg~~~~~ 234 (280)
++||++|+ +++|+||+|+|+||+++|++.++|+.+|++|||+|||++++++. .|.+. .++.++++... |
T Consensus 166 a~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~~-p 243 (333)
T PRK08638 166 GLEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSR-P 243 (333)
T ss_pred HHHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCCC-c
Confidence 99999999 57999999999999999999999999999999999999987532 44432 23445554432 3
Q ss_pred ccc----ccccCCeEEEeCHHHHHHHHHHhhhcCCcc
Q 023565 235 SVL----DIDILDEVITVSHKIDLHLLHFCCCSSPTL 267 (280)
Q Consensus 235 ~~~----~~~~vd~~~~V~d~ea~~~~~~la~~eG~~ 267 (280)
..+ .++++|+++.|+|+|+++++++|++.+|++
T Consensus 244 ~~~~~~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~ 280 (333)
T PRK08638 244 GNLTYEIVRELVDDIVLVSEDEIRNAMKDLIQRNKVV 280 (333)
T ss_pred cHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCe
Confidence 333 357899999999999999999999988766
No 32
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-55 Score=389.14 Aligned_cols=262 Identities=21% Similarity=0.257 Sum_probs=237.9
Q ss_pred hhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHH
Q 023565 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLA 85 (280)
Q Consensus 6 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA 85 (280)
..+.++...+-.|||.+.-.|++.+|.++|+|+|++||+||||.||+.|++.+.-++++ ..+|+++|.||||.|+|
T Consensus 55 ~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~A 130 (457)
T KOG1250|consen 55 SAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAAA 130 (457)
T ss_pred hhhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHHH
Confidence 35567888899999999988999999999999999999999999999999998877765 45699999999999999
Q ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 023565 86 FIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGP 165 (280)
Q Consensus 86 ~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (280)
++|+++|+|++||||..+|.-|.++++.+||+|++.+ .+|+++...|.++++++ ++.|++|||+|+.| +|++|++.
T Consensus 131 yaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G--~~~deAk~~a~~lAke~-gl~yI~pfDhP~I~-aGqgTig~ 206 (457)
T KOG1250|consen 131 YAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSG--EDWDEAKAFAKRLAKEN-GLTYIPPFDHPDIW-AGQGTIGL 206 (457)
T ss_pred HHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEec--ccHHHHHHHHHHHHHhc-CceecCCCCCchhh-cCcchHHH
Confidence 9999999999999999999999999999999999998 57999999999999998 89999999999998 89999999
Q ss_pred HHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----CCcccCcccCCCC---
Q 023565 166 EIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR-----GKHLIQGIGAGII--- 233 (280)
Q Consensus 166 Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg~~~~--- 233 (280)
||++|++..+++|+||||+||+++||++++|...|+++|||||+++|.++. .|++ ..+.++|+++..+
T Consensus 207 EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~ 286 (457)
T KOG1250|consen 207 EILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGEN 286 (457)
T ss_pred HHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHH
Confidence 999999666669999999999999999999999999999999999999764 4555 3567889987654
Q ss_pred ccccccccCCeEEEeCHHHHHHHHHHh-------hhcCCcchhhhHHhh
Q 023565 234 PSVLDIDILDEVITVSHKIDLHLLHFC-------CCSSPTLSFQKKITY 275 (280)
Q Consensus 234 ~~~~~~~~vd~~~~V~d~ea~~~~~~l-------a~~eG~~~~~~~~~~ 275 (280)
++.+.+.++|+++.|+|+|+..++..+ .++.|++++|+...|
T Consensus 287 tf~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~ 335 (457)
T KOG1250|consen 287 TFELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSG 335 (457)
T ss_pred HHHHHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhc
Confidence 455678899999999999999999887 668899999998877
No 33
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-54 Score=392.51 Aligned_cols=264 Identities=20% Similarity=0.259 Sum_probs=229.1
Q ss_pred ccchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023565 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (280)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~ 82 (280)
+...+++++.+.+++|||++++++++..|.+||+|+|++|||||||||++.+++.++.++.. ..++|++|+||||+
T Consensus 6 ~i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~ 81 (317)
T PRK06815 6 AILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQ 81 (317)
T ss_pred HHHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHH
Confidence 44678899999999999999999998888999999999999999999999999987643321 24599999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 023565 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (280)
Q Consensus 83 alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (280)
|+|++|+.+|++|+||||+++++.|+..++.+||+|+.++. +++++...+++++++. +.+|++||+||.++ .||++
T Consensus 82 alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~t 157 (317)
T PRK06815 82 GVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGG--DALNAELAARRAAEQQ-GKVYISPYNDPQVI-AGQGT 157 (317)
T ss_pred HHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEecCCCChhhh-cchhH
Confidence 99999999999999999999999999999999999999995 4788888888888776 78899999999887 79999
Q ss_pred HHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----CCcccCcccCCCC
Q 023565 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR-----GKHLIQGIGAGII 233 (280)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg~~~~ 233 (280)
+++||++|++ .||+||+|+|+||+++|++.++|+++|+++||||||++++++. .|++ .++.+++++.+..
T Consensus 158 ~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~ 236 (317)
T PRK06815 158 IGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVE 236 (317)
T ss_pred HHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCc
Confidence 9999999995 6999999999999999999999999999999999999998653 2332 2346777654432
Q ss_pred ----ccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 234 ----PSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 234 ----~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
++.+.++++|+++.|+|+|+++++++|++.+|++ +++++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~ 289 (317)
T PRK06815 237 PGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKL 289 (317)
T ss_pred ccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhC
Confidence 2345678999999999999999999999998876 66776654
No 34
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=1.9e-54 Score=401.73 Aligned_cols=249 Identities=23% Similarity=0.334 Sum_probs=220.9
Q ss_pred CcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEE
Q 023565 18 TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII 97 (280)
Q Consensus 18 TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~i 97 (280)
|||+++++|++..|.+||+|+|++|||||||+|++.+++.++.+++.. .+||++|+||||+++|++|+++|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 899999999998899999999999999999999999999999887752 3599999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHHhhCCCCCE
Q 023565 98 VMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDA 177 (280)
Q Consensus 98 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~ 177 (280)
|||+++++.|+++++.|||+|+.++ .+++++.+.+++++++. +++|++||+|+.++ +||+|+++||++|+ ++||+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~--~~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~t~~~Ei~~q~-~~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHG--DDYDEAYAFATSLAEEE-GRVFVHPFDDEFVM-AGQGTIGLEIMEDI-PDVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEecCCCCChhhh-hhhHHHHHHHHHhC-CCCCE
Confidence 9999999999999999999999998 46899999999998886 78999999999987 79999999999999 47999
Q ss_pred EEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----CCcccCcccCCCC---ccccccccCCeE
Q 023565 178 FISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR-----GKHLIQGIGAGII---PSVLDIDILDEV 245 (280)
Q Consensus 178 vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg~~~~---~~~~~~~~vd~~ 245 (280)
||+|+|+||+++|++.++|+.+|++|||||||++++++. .|++ ..++++|++.+.. ++.+.++++|++
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~ 231 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDV 231 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEE
Confidence 999999999999999999999999999999999998653 3433 3456778775432 344567899999
Q ss_pred EEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 246 ITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 246 ~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
+.|+|+|+.+++++|++.+|++ ++++++++
T Consensus 232 v~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~ 268 (380)
T TIGR01127 232 VTVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQ 268 (380)
T ss_pred EEECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhC
Confidence 9999999999999998776554 66666653
No 35
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=4.4e-54 Score=389.46 Aligned_cols=254 Identities=22% Similarity=0.264 Sum_probs=221.0
Q ss_pred CCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEE
Q 023565 17 NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLI 96 (280)
Q Consensus 17 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ 96 (280)
+|||++++++++..|.+||+|+|++|||||||||++.+++.++.++|. .+ .++||++|+||||+|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~-~~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NE-CVHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-cc-CCeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999998888999999999999999999999999999998885 23 3459999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHHhhCC--C
Q 023565 97 IVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG--K 174 (280)
Q Consensus 97 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--~ 174 (280)
||||+++++.|++.|+.|||+|+.++.. .++++.+.+++++++.++++|++||+||.++ .||.|+++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~-~g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLIW-EGHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchhh-ccccHHHHHHHHHccccCC
Confidence 9999999999999999999999999853 2666777777777765578999999999998 6899999999999965 5
Q ss_pred CCEEEEecCCchhHHHHHHHHHhcC-CCcEEEEEeCCCCcccc----CCCC-----CCcccCcccCCCCcc---cccccc
Q 023565 175 VDAFISGIGTGGTVTGAGRFLKENN-PDIKVYGVEPSESAVLN----GGQR-----GKHLIQGIGAGIIPS---VLDIDI 241 (280)
Q Consensus 175 ~d~vv~~vG~Gg~~~Gi~~~~k~~~-p~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg~~~~~~---~~~~~~ 241 (280)
||+||+|+|+||+++|++.+||+.+ |+++||+|||++++++. .+++ ..++++|++.+..+. ...++.
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~ 236 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEH 236 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhc
Confidence 9999999999999999999999996 99999999999997653 2332 246778888876643 334567
Q ss_pred CCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHh
Q 023565 242 LDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKIT 274 (280)
Q Consensus 242 vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~ 274 (280)
+|+++.|+|+|+++++++|++.+|++ +++++++
T Consensus 237 ~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~ 276 (316)
T cd06448 237 NIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYS 276 (316)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHh
Confidence 89999999999999999999988887 5666653
No 36
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=4.7e-54 Score=402.17 Aligned_cols=257 Identities=19% Similarity=0.263 Sum_probs=222.2
Q ss_pred cCCCcceeccccccCCC--------ceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 023565 15 IGNTPMVYLNNVVDGCV--------ARIAAKLETMEP-CSSVKDRIAYSMIKD-----AEDKGLITPGK----------- 69 (280)
Q Consensus 15 ~~~TPl~~~~~l~~~~g--------~~l~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~g~----------- 69 (280)
+++|||++++.+++..| .+||+|+|++|| |||||+|++.+++.. +.+.|.+.|+.
T Consensus 73 ~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~ 152 (441)
T PRK02991 73 IIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFR 152 (441)
T ss_pred ccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhh
Confidence 89999999999987664 699999999999 999999999998875 45778776654
Q ss_pred -----eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCe
Q 023565 70 -----TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDG 144 (280)
Q Consensus 70 -----~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (280)
.+||++||||||+|+|++|+.+|++|+||||+++++.|++.++.|||+|+.++ .+++++.+.++++++++++.
T Consensus 153 ~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~--~~~~~a~~~A~~la~~~~~~ 230 (441)
T PRK02991 153 QFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYE--GDYGVAVEEGRKAAESDPNC 230 (441)
T ss_pred hhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEEC--CCHHHHHHHHHHHHHhcCCe
Confidence 36999999999999999999999999999999999999999999999999999 46899999999998887568
Q ss_pred EEcCCCCCCccHHHHHHhHHHHHHHhhCC--------CCCEEEEecCCchhHHHHHHHHHhc-CCCcEEEEEeCCCCccc
Q 023565 145 YLLRQFENPANPKIHYETTGPEIWQDSGG--------KVDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPSESAVL 215 (280)
Q Consensus 145 ~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--------~~d~vv~~vG~Gg~~~Gi~~~~k~~-~p~~~vigVe~~~~~~~ 215 (280)
+|+++++++..+ +||+|+++||++|+++ .||+||+|+|+||+++|++.++|++ +|+++||+|||++++++
T Consensus 231 ~~~~~~~~~~~i-aG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~ 309 (441)
T PRK02991 231 YFIDDENSRTLF-LGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCM 309 (441)
T ss_pred EeCCCCCchhHH-HhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHH
Confidence 999999777776 7999999999999952 2679999999999999999999997 68999999999998754
Q ss_pred c----CCCC-----------CCcccCcccCCCCc---cccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhh
Q 023565 216 N----GGQR-----------GKHLIQGIGAGIIP---SVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQ 270 (280)
Q Consensus 216 ~----~g~~-----------~~~~~~glg~~~~~---~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~ 270 (280)
. .|++ ..++++|++++..+ +.+.++++|+++.|+|+|+++++++|++.+|++ +||
T Consensus 310 ~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~AaalA 389 (441)
T PRK02991 310 LLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGMA 389 (441)
T ss_pred HHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHHH
Confidence 2 3331 24678888876543 445678999999999999999999998877764 677
Q ss_pred hHHh
Q 023565 271 KKIT 274 (280)
Q Consensus 271 ~~~~ 274 (280)
++++
T Consensus 390 a~~~ 393 (441)
T PRK02991 390 GPVR 393 (441)
T ss_pred HHHH
Confidence 7654
No 37
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=4.4e-54 Score=391.43 Aligned_cols=255 Identities=22% Similarity=0.273 Sum_probs=223.4
Q ss_pred cchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 023565 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (280)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~a 83 (280)
...+++++..++.+|||++++.+ +||+|+|++|||||||+|++.+++..+.+++.. ++||++|+||||.|
T Consensus 26 i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~----~~VV~aSsGN~G~a 95 (349)
T PRK08813 26 VLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDE----RPVICASAGNHAQG 95 (349)
T ss_pred HHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCC----CeEEEECCCHHHHH
Confidence 45678999999999999998764 499999999999999999999999999988862 34999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhH
Q 023565 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (280)
Q Consensus 84 lA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (280)
+|++|+.+|++|+||||+++++.|+..++.|||+|+.++ .+++++.+.+++++++. +++|++||+||.++ +||+|+
T Consensus 96 lA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g--~~~~~a~~~a~~la~~~-g~~~v~~~~np~~i-~G~~Ti 171 (349)
T PRK08813 96 VAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHG--NSYDEAYAFARELADQN-GYRFLSAFDDPDVI-AGQGTV 171 (349)
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEEcCccCChHHH-HHHHHH
Confidence 999999999999999999999999999999999999997 46899999999999886 78999999999998 799999
Q ss_pred HHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc---CCCC-----CCcccCcccCCC---
Q 023565 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN---GGQR-----GKHLIQGIGAGI--- 232 (280)
Q Consensus 164 ~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~---~g~~-----~~~~~~glg~~~--- 232 (280)
++||++|. ||+||+|+|+||+++|++.++|+ +.+|||||||++++++. .+.+ ..++++|++...
T Consensus 172 g~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~ 246 (349)
T PRK08813 172 GIELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGF 246 (349)
T ss_pred HHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcch
Confidence 99999873 79999999999999999999995 57899999999987542 1322 357788887643
Q ss_pred CccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhhhc
Q 023565 233 IPSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITYNG 277 (280)
Q Consensus 233 ~~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~~~ 277 (280)
.++.+.++++|+++.|+|+|+.+++++|++.+|++ ++|++++.-|
T Consensus 247 ~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~~~~ 298 (349)
T PRK08813 247 LTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRRVSG 298 (349)
T ss_pred hHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHHhCC
Confidence 45566788999999999999999999998876654 7888876544
No 38
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=6.1e-54 Score=391.37 Aligned_cols=264 Identities=17% Similarity=0.221 Sum_probs=227.4
Q ss_pred ccchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023565 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (280)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~ 82 (280)
++..+++++...+++|||+++++|++..|++||+|+|++||+||||+|++.+++.++.++|.+. ++||++|+||||+
T Consensus 9 ~i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~ 85 (338)
T PRK06608 9 NIAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQ 85 (338)
T ss_pred HHHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHH
Confidence 3457888999999999999999999988999999999999999999999999999999988642 4599999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 023565 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (280)
Q Consensus 83 alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (280)
++|++|+.+|++|+||||+++++.|+++++.|||+|+.++. .+++.+.+++ +++ +++||++||+|+.++ +||+|
T Consensus 86 alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~~-~g~~t 159 (338)
T PRK06608 86 AVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDSTI-AGAGT 159 (338)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHHh-ccHHH
Confidence 99999999999999999999999999999999999999973 3667777777 544 478999999999988 69999
Q ss_pred HHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC------CCcccCcccCCC
Q 023565 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR------GKHLIQGIGAGI 232 (280)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~------~~~~~~glg~~~ 232 (280)
+++||++|++.+||+||+|+|+||+++|++.++|..+|+++||+|||.+++++. .+++ ..++++|++.+.
T Consensus 160 ~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~ 239 (338)
T PRK06608 160 LCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLS 239 (338)
T ss_pred HHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCC
Confidence 999999999668999999999999999999999999999999999999987432 3432 246778887754
Q ss_pred Ccc-ccc-cccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 233 IPS-VLD-IDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 233 ~~~-~~~-~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
... .+. .+.+|+++.|+|+|++++++.|++.+|++ .+++++++
T Consensus 240 ~~~~~~~~~~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~~ 291 (338)
T PRK06608 240 VSARTFEYLKKLDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNW 291 (338)
T ss_pred CCHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHhh
Confidence 322 121 13479999999999999999998887775 66777665
No 39
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=1.3e-53 Score=397.76 Aligned_cols=251 Identities=20% Similarity=0.262 Sum_probs=219.2
Q ss_pred ccCCCcceeccccccCC--------CceEEEEeCCCCC-CCchhhHHHHHHHHH-----HHHcCCCCCCC----------
Q 023565 14 LIGNTPMVYLNNVVDGC--------VARIAAKLETMEP-CSSVKDRIAYSMIKD-----AEDKGLITPGK---------- 69 (280)
Q Consensus 14 ~~~~TPl~~~~~l~~~~--------g~~l~~K~E~~~p-tGS~K~R~a~~~l~~-----a~~~g~~~~g~---------- 69 (280)
.+++|||++++++++.. +.+||+|+|++|| |||||+|++.+++.. +.+.|.+.++.
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 89999999999998743 5799999999999 999999999998864 67889887764
Q ss_pred ------eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCC
Q 023565 70 ------TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPD 143 (280)
Q Consensus 70 ------~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 143 (280)
.+||++|+||||+|+|++|+.+|++|+||||+++++.|++.++.|||+|+.++. +++++.+.+++++++.++
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~ 224 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPM 224 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCC
Confidence 469999999999999999999999999999999999999999999999999994 689999999999988766
Q ss_pred eEEcCCCCCCccHHHHHHhHHHHHHHhhCC--------CCCEEEEecCCchhHHHHHHHHHhc-CCCcEEEEEeCCCCcc
Q 023565 144 GYLLRQFENPANPKIHYETTGPEIWQDSGG--------KVDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPSESAV 214 (280)
Q Consensus 144 ~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--------~~d~vv~~vG~Gg~~~Gi~~~~k~~-~p~~~vigVe~~~~~~ 214 (280)
.+|++++ |+.++.+||+|+++||++|+++ .||+|++|+|+||+++||+.++|++ +|++|||+|||+++++
T Consensus 225 ~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~ 303 (431)
T TIGR02035 225 CYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPC 303 (431)
T ss_pred eEECCCC-CcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHH
Confidence 7888774 5556668999999999999952 4779999999999999999999997 8999999999999985
Q ss_pred cc----CCC-----------CCCcccCcccCCCCcc---ccccccCCeEEEeCHHHHHHHHHHhhhcCCcc
Q 023565 215 LN----GGQ-----------RGKHLIQGIGAGIIPS---VLDIDILDEVITVSHKIDLHLLHFCCCSSPTL 267 (280)
Q Consensus 215 ~~----~g~-----------~~~~~~~glg~~~~~~---~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~ 267 (280)
+. .|+ ...++++||+++..+. .+.++++|+++.|+|+|+++++++|++.+|++
T Consensus 304 ~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~ 374 (431)
T TIGR02035 304 MLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKR 374 (431)
T ss_pred HHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCe
Confidence 42 232 1257889998876543 33467899999999999999999999988886
No 40
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.1e-53 Score=407.72 Aligned_cols=260 Identities=27% Similarity=0.370 Sum_probs=228.3
Q ss_pred HhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023565 9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (280)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 88 (280)
.++...+.+|||+++++|++..|.+||+|+|++|||||||+|+|.+++..+.++.. .++||++|+||||+++|++|
T Consensus 12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~aa 87 (504)
T PRK09224 12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALSA 87 (504)
T ss_pred HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHHH
Confidence 36788999999999999999899999999999999999999999999988754321 34599999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHH
Q 023565 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW 168 (280)
Q Consensus 89 ~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (280)
+.+|++|+||||+++|..|++.++.|||+|+.++ .+++++.+.+++++++. +.+|++||+||.++ +|++|+++||+
T Consensus 88 ~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g--~~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~i-~G~gTi~~EI~ 163 (504)
T PRK09224 88 ARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHG--DSFDEAYAHAIELAEEE-GLTFIHPFDDPDVI-AGQGTIAMEIL 163 (504)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCcHHH-HhHHHHHHHHH
Confidence 9999999999999999999999999999999998 46899999999998886 78999999999998 79999999999
Q ss_pred HhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----CCcccCcccCCCC---ccc
Q 023565 169 QDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR-----GKHLIQGIGAGII---PSV 236 (280)
Q Consensus 169 ~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg~~~~---~~~ 236 (280)
+|++..||+||+|+||||+++|++.++|.++|++|||||||++++++. .|++ ..+.++|+++..+ ++.
T Consensus 164 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~ 243 (504)
T PRK09224 164 QQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFR 243 (504)
T ss_pred HhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHH
Confidence 999655999999999999999999999999999999999999998753 3443 2345677765433 345
Q ss_pred cccccCCeEEEeCHHHHHHHHHHhhhcC-------CcchhhhHHhhh
Q 023565 237 LDIDILDEVITVSHKIDLHLLHFCCCSS-------PTLSFQKKITYN 276 (280)
Q Consensus 237 ~~~~~vd~~~~V~d~ea~~~~~~la~~e-------G~~~~~~~~~~~ 276 (280)
+.++++|+++.|+|+|+.++++.|++.+ |++++||+.+|.
T Consensus 244 ~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~~ 290 (504)
T PRK09224 244 LCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYV 290 (504)
T ss_pred HHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhh
Confidence 6688999999999999999999997654 555888888764
No 41
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=1.3e-53 Score=384.99 Aligned_cols=265 Identities=23% Similarity=0.326 Sum_probs=232.7
Q ss_pred CccchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHH
Q 023565 2 EDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTG 81 (280)
Q Consensus 2 ~~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g 81 (280)
+.+.+++++|.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.+++. ..+||++|+||||
T Consensus 2 ~~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g 77 (304)
T cd01562 2 EDILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHA 77 (304)
T ss_pred hHHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHH
Confidence 456788999999999999999999998888999999999999999999999999999887662 2349999999999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHH
Q 023565 82 VGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYE 161 (280)
Q Consensus 82 ~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (280)
+|+|++|+.+|++|++|+|++.++.|+++++.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.++ .||+
T Consensus 78 ~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~la~~~-~~~~~~~~~n~~~~-~g~~ 153 (304)
T cd01562 78 QGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKARELAEEE-GLTFIHPFDDPDVI-AGQG 153 (304)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcchh-ccHH
Confidence 999999999999999999999999999999999999999995 4889999999998886 78999999999887 6999
Q ss_pred hHHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCC-----CCcccCcccCCC
Q 023565 162 TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQR-----GKHLIQGIGAGI 232 (280)
Q Consensus 162 t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg~~~ 232 (280)
++++||++|++ .||+||+|+|+||+++|++.++|+.+|++|||+|||.+++.+. .|.. ..+.+++++.+.
T Consensus 154 ~~~~Ei~~q~~-~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~ 232 (304)
T cd01562 154 TIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKR 232 (304)
T ss_pred HHHHHHHHhcC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCC
Confidence 99999999995 5999999999999999999999999999999999999987653 2322 244566766543
Q ss_pred C---ccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 233 I---PSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 233 ~---~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
. ++.+.++++|+++.|+|+|+++++++|++.||++ .+++++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~ 285 (304)
T cd01562 233 PGELTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSG 285 (304)
T ss_pred chHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhC
Confidence 2 2345678899999999999999999999988876 66677665
No 42
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=3.3e-53 Score=382.92 Aligned_cols=250 Identities=23% Similarity=0.326 Sum_probs=218.0
Q ss_pred ccchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023565 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (280)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~ 82 (280)
++..+++++...+++|||+++++++.. +.+||+|+|++|||||||||++.+++.++.+ + .++||++|+||||+
T Consensus 9 ~i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~-----~~~vv~aSsGN~g~ 81 (310)
T PRK08246 9 DVRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P-----AAGVVAASGGNAGL 81 (310)
T ss_pred HHHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----CCeEEEeCCCHHHH
Confidence 345688999999999999999998876 7899999999999999999999999988765 2 24599999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 023565 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (280)
Q Consensus 83 alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (280)
|+|++|+.+|++|+||||+.+++.|+.+++.|||+|+.++. +++++.+.+.+++++. +++|++||+||.++ .||+|
T Consensus 82 a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~i-~g~~t 157 (310)
T PRK08246 82 AVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEVL-AGAGT 157 (310)
T ss_pred HHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhhh-cchHH
Confidence 99999999999999999999999999999999999999984 5788888998888876 78999999999988 69999
Q ss_pred HHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcccc----CCCCCCc-----ccCcccCCCC
Q 023565 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLN----GGQRGKH-----LIQGIGAGII 233 (280)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~~~~-----~~~glg~~~~ 233 (280)
+++||++|+ +.||+||+|+|+||+++|++.+++. .+|||+|||++++++. .|++.++ ..++++.+..
T Consensus 158 ~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~ 233 (310)
T PRK08246 158 LGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRV 233 (310)
T ss_pred HHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCc
Confidence 999999999 5799999999999999999999964 4899999999998654 3444222 2345555443
Q ss_pred ---ccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc
Q 023565 234 ---PSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL 267 (280)
Q Consensus 234 ---~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~ 267 (280)
++.+.++++|+++.|+|+|+++++++|++.+|++
T Consensus 234 ~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~ 270 (310)
T PRK08246 234 GEIAFALARAHVVTSVLVSDEAIIAARRALWEELRLA 270 (310)
T ss_pred cHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCce
Confidence 3446778999999999999999999999988875
No 43
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=2.1e-53 Score=390.02 Aligned_cols=258 Identities=22% Similarity=0.246 Sum_probs=219.7
Q ss_pred HhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023565 9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (280)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 88 (280)
++++..+|+|||++++++++..|++||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|++|
T Consensus 20 ~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~a 94 (351)
T PRK06352 20 PMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAYA 94 (351)
T ss_pred CccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHH
Confidence 35788999999999999998888899999999999999999999999999998884 4699999999999999999
Q ss_pred HHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHH
Q 023565 89 AARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (280)
Q Consensus 89 ~~~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (280)
+.+|++|+||||++ .++.|+.+++.|||+|+.++. +++++.+.+++++++. +.++++ +.||.++ +||.|+++||
T Consensus 95 a~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~-~G~~t~~~EI 169 (351)
T PRK06352 95 TRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVN-SVNPYRL-EGQKTAAFEI 169 (351)
T ss_pred HHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-Cccccc-CCCccce-eeHHHHHHHH
Confidence 99999999999997 589999999999999999984 5788889999988775 566665 4588888 6999999999
Q ss_pred HHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCC-----cEEEEEeCCCCccccCCCCC---CcccCcccCCCC-ccccc
Q 023565 168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPD-----IKVYGVEPSESAVLNGGQRG---KHLIQGIGAGII-PSVLD 238 (280)
Q Consensus 168 ~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~-----~~vigVe~~~~~~~~~g~~~---~~~~~glg~~~~-~~~~~ 238 (280)
++|++..||+||+|+|+||+++|++++||+++|+ ++||+|||++++++..+++. .+++++++.+.. .+...
T Consensus 170 ~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~ 249 (351)
T PRK06352 170 CEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASWGLA 249 (351)
T ss_pred HHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHH
Confidence 9999767999999999999999999999998887 89999999999876655542 334455554421 22222
Q ss_pred cccC----CeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhhh
Q 023565 239 IDIL----DEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITYN 276 (280)
Q Consensus 239 ~~~v----d~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~~ 276 (280)
.+.+ +.++.|+|+|+++++++|++.+|++ ++|+++++.
T Consensus 250 ~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~~ 298 (351)
T PRK06352 250 EAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHV 298 (351)
T ss_pred HHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHHH
Confidence 3333 3589999999999999999987776 778877754
No 44
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-54 Score=360.37 Aligned_cols=263 Identities=23% Similarity=0.355 Sum_probs=234.1
Q ss_pred ccchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHH
Q 023565 3 DNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGV 82 (280)
Q Consensus 3 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~ 82 (280)
+...+++|+.+.+..||++.++.+.+..|..||+|+|++|.+|+||.|||.+.+..+.++.. .+++++.||||||.
T Consensus 11 dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHaq 86 (323)
T KOG1251|consen 11 DVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHAQ 86 (323)
T ss_pred HHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHHH
Confidence 34578999999999999999999999999999999999999999999999999988764332 35699999999999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 023565 83 GLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (280)
Q Consensus 83 alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (280)
|+|++|+..|+|++||||.++|..|+..++.|||+|+.+++. .+++.+.++++.++. +.+.++||++|..+ +|++|
T Consensus 87 AlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~vI-aGqgT 162 (323)
T KOG1251|consen 87 ALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSVI-AGQGT 162 (323)
T ss_pred HHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCccee-eccch
Confidence 999999999999999999999999999999999999999964 467778899999888 78999999999998 79999
Q ss_pred HHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcc----ccCCCC-----CCcccCcccC---
Q 023565 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAV----LNGGQR-----GKHLIQGIGA--- 230 (280)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~----~~~g~~-----~~~~~~glg~--- 230 (280)
++.|+++|. +.+|.+|+|+|+||+++|++.+.|.+.|+++|++|||++++. +..|.. ..++++|...
T Consensus 163 iA~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~l 241 (323)
T KOG1251|consen 163 IALELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHL 241 (323)
T ss_pred HHHHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhccc
Confidence 999999999 589999999999999999999999999999999999988763 333432 4567888765
Q ss_pred CCCccccccccCCeEEEeCHHHHHHHHHHhh-------hcCCcchhhhHHh
Q 023565 231 GIIPSVLDIDILDEVITVSHKIDLHLLHFCC-------CSSPTLSFQKKIT 274 (280)
Q Consensus 231 ~~~~~~~~~~~vd~~~~V~d~ea~~~~~~la-------~~eG~~~~~~~~~ 274 (280)
|..+|.+.++++|++++|+|+|+++++++++ +|.+.++||+.+-
T Consensus 242 G~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~ 292 (323)
T KOG1251|consen 242 GPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLS 292 (323)
T ss_pred cccchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHHHHHHHh
Confidence 3467888899999999999999999988774 5899999999653
No 45
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=8.5e-52 Score=379.73 Aligned_cols=259 Identities=24% Similarity=0.268 Sum_probs=220.5
Q ss_pred HHhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 023565 8 KRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (280)
Q Consensus 8 ~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~ 87 (280)
.++++..+|+|||++++++++..|.+||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|++
T Consensus 19 ~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~~ 93 (352)
T PRK06721 19 TPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAAY 93 (352)
T ss_pred CCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHH
Confidence 446788899999999999988888899999999999999999999999999998884 469999999999999999
Q ss_pred HHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHH
Q 023565 88 AAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPE 166 (280)
Q Consensus 88 a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 166 (280)
|+.+|++|+||||++. ++.|+++++.+||+|+.+++ +++++.+.+++++++. +.++.+ +.||.++ .||.|+++|
T Consensus 94 aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~~-~G~~t~~~E 168 (352)
T PRK06721 94 AARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SVNPYRI-EGQKTAAFE 168 (352)
T ss_pred HHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CCCchhh-hhhhhHHHH
Confidence 9999999999999975 78999999999999999984 5888889999988876 566665 5688887 699999999
Q ss_pred HHHhhCCCCCEEEEecCCchhHHHH----HHHHHhcC-CCcEEEEEeCCCCccccCCCC---CCcccCcccCCCCc-cc-
Q 023565 167 IWQDSGGKVDAFISGIGTGGTVTGA----GRFLKENN-PDIKVYGVEPSESAVLNGGQR---GKHLIQGIGAGIIP-SV- 236 (280)
Q Consensus 167 i~~q~~~~~d~vv~~vG~Gg~~~Gi----~~~~k~~~-p~~~vigVe~~~~~~~~~g~~---~~~~~~glg~~~~~-~~- 236 (280)
|++|+++.||+||+|+|+||+++|+ +.++|+.+ |+++||+|||++++++..+.. ..+.+++++.+..+ +.
T Consensus 169 i~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~~~~~~~ 248 (352)
T PRK06721 169 ICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGNPASWSY 248 (352)
T ss_pred HHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCceeeccccCCCCCHHH
Confidence 9999976799999999999999975 45556664 899999999999987765543 34556677655321 11
Q ss_pred ---cccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhhh
Q 023565 237 ---LDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITYN 276 (280)
Q Consensus 237 ---~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~~ 276 (280)
..+.++|+++.|+|+|+++++++|++.||++ .|++++++.
T Consensus 249 ~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~~~~~ 298 (352)
T PRK06721 249 AVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMKHV 298 (352)
T ss_pred HHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHHHHHH
Confidence 1345899999999999999999999998886 778887764
No 46
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=1.3e-51 Score=375.15 Aligned_cols=257 Identities=21% Similarity=0.220 Sum_probs=223.3
Q ss_pred HhhhcccCCCcceeccccccCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 023565 9 RDVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (280)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~ 87 (280)
++++..+++|||+++++|++..+ .+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV-----KAVACASTGNTSASLAAY 88 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHH
Confidence 56888999999999999988766 799999999999999999999999999998873 469999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHH
Q 023565 88 AAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (280)
Q Consensus 88 a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (280)
|+.+|++|++|||+++++.|+++++.+||+|+.++. +++++.+.+++++++. .+|++||+||.++ .||.+++.||
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~~-~g~~t~~~Ei 163 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYRL-EGQKTIAFEI 163 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCccee-cchhhhHHHH
Confidence 999999999999999999999999999999999985 5788888999988875 7899999999998 6999999999
Q ss_pred HHhhCC-CCCEEEEecCCchhHHHHHHHHHhcC------CCcEEEEEeCCCCcccc----CCCC-------CCcccCccc
Q 023565 168 WQDSGG-KVDAFISGIGTGGTVTGAGRFLKENN------PDIKVYGVEPSESAVLN----GGQR-------GKHLIQGIG 229 (280)
Q Consensus 168 ~~q~~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~------p~~~vigVe~~~~~~~~----~g~~-------~~~~~~glg 229 (280)
++|+++ .||+||+|+|+||+++|++.++|+++ |+++||+|||.+++.+. .|.+ ..+++++++
T Consensus 164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~ 243 (324)
T cd01563 164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIR 243 (324)
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeee
Confidence 999963 69999999999999999999999875 58999999999986542 2211 245667777
Q ss_pred CCCCc-----cccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 230 AGIIP-----SVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 230 ~~~~~-----~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
.+..+ +.+.+++.|+++.|+|+|+++++++|++.+|++ .+++++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~l 301 (324)
T cd01563 244 IGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKL 301 (324)
T ss_pred cCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHHHHHHHH
Confidence 65322 123456789999999999999999999988876 66777665
No 47
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=1.4e-51 Score=386.01 Aligned_cols=259 Identities=15% Similarity=0.205 Sum_probs=225.4
Q ss_pred hhhcccCCCcceeccccccCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023565 10 DVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (280)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 88 (280)
+++..+|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.+|.+.|. .+|+++|+||||+|+|++|
T Consensus 82 ~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~a 156 (421)
T PRK07591 82 PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHA 156 (421)
T ss_pred CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHH
Confidence 4788999999999999998888 599999999999999999999999999999885 4599999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHH
Q 023565 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW 168 (280)
Q Consensus 89 ~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (280)
+.+|++|+||||+++++.|+.+++.|||+|+.+++ +++++.+.+++++++.++++|++++.+|+.+ +|++|+++||+
T Consensus 157 a~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~i-eG~~Tia~Ei~ 233 (421)
T PRK07591 157 ARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDG--NYDDVNRLCSELANEHEGWGFVNINLRPYYA-EGSKTLGYEVA 233 (421)
T ss_pred HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCEEEecCCCCcccc-cchHHHHHHHH
Confidence 99999999999999999999999999999999995 5888999999988876578899988889887 69999999999
Q ss_pred HhhCCC-CCEEEEecCCchhHHHHHHHHHhc-------CCCcEEEEEeCCCCcccc----CCCC------CCcccCcccC
Q 023565 169 QDSGGK-VDAFISGIGTGGTVTGAGRFLKEN-------NPDIKVYGVEPSESAVLN----GGQR------GKHLIQGIGA 230 (280)
Q Consensus 169 ~q~~~~-~d~vv~~vG~Gg~~~Gi~~~~k~~-------~p~~~vigVe~~~~~~~~----~g~~------~~~~~~glg~ 230 (280)
+|++++ ||+||+|+|+||+++|++.+||++ .+.+|||+|||++++++. .+.. ..++++++..
T Consensus 234 eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~ 313 (421)
T PRK07591 234 EQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAI 313 (421)
T ss_pred HHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheec
Confidence 999654 999999999999999999999997 588999999999976543 2321 2455666654
Q ss_pred CCCc-----cccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhhh
Q 023565 231 GIIP-----SVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITYN 276 (280)
Q Consensus 231 ~~~~-----~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~~ 276 (280)
+... +...+++.++++.|+|+|+++++++|++.+|++ ++|+++++.
T Consensus 314 ~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l~ 371 (421)
T PRK07591 314 GNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLV 371 (421)
T ss_pred CCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHH
Confidence 3321 223467788999999999999999999988888 788887753
No 48
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=2.4e-51 Score=377.21 Aligned_cols=255 Identities=23% Similarity=0.248 Sum_probs=219.0
Q ss_pred hhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 023565 10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (280)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~ 89 (280)
+++..+|+|||++++++++..|.+||+|+|++|||||||||++.+++.++.++|. .+||++||||||+++|++|+
T Consensus 24 ~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~a~ 98 (353)
T PRK07409 24 VVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAYAA 98 (353)
T ss_pred cccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHH
Confidence 4677999999999999988788899999999999999999999999999998874 46999999999999999999
Q ss_pred HcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHH
Q 023565 90 ARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW 168 (280)
Q Consensus 90 ~~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 168 (280)
.+|++|+||||++ .++.|++.++.|||+|+.+++ +++++.+.+++++++. +.+++++ .||.++ +||.|+++||+
T Consensus 99 ~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~~-~g~~t~~~EI~ 173 (353)
T PRK07409 99 RAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-VNPYRI-EGQKTAAFEIV 173 (353)
T ss_pred HcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-CCchhh-hhHHHHHHHHH
Confidence 9999999999998 689999999999999999994 5889999999988876 4677765 588888 69999999999
Q ss_pred HhhCCCCCEEEEecCCchhHHHHHHHHHhcCC------CcEEEEEeCCCCccccCCCC---CCcccCcccCCCCccc---
Q 023565 169 QDSGGKVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLNGGQR---GKHLIQGIGAGIIPSV--- 236 (280)
Q Consensus 169 ~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p------~~~vigVe~~~~~~~~~g~~---~~~~~~glg~~~~~~~--- 236 (280)
+|+++.||+||+|+|+||+++|++.++++..+ .+|||+|||.+++++..+++ ..+++++++.+. |..
T Consensus 174 ~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~-~~~~~~ 252 (353)
T PRK07409 174 DALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGN-PASWDK 252 (353)
T ss_pred HHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCC-CCCHHH
Confidence 99966799999999999999999999998743 48999999999887765544 234566666542 222
Q ss_pred ---cccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 237 ---LDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 237 ---~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
..+++.++++.|+|+|+++++++|++.+|++ ++++++++
T Consensus 253 ~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa~~~~ 301 (353)
T PRK07409 253 AVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAGLLKA 301 (353)
T ss_pred HHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHHHHHH
Confidence 1345677899999999999999999988875 67777654
No 49
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=2.1e-51 Score=382.46 Aligned_cols=256 Identities=21% Similarity=0.193 Sum_probs=221.5
Q ss_pred hhcccCCCcceeccccccCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 023565 11 VTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (280)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~ 89 (280)
++..+|+|||++++++++.+| .+||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|++|+
T Consensus 73 vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa 147 (394)
T PRK08197 73 VSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYAA 147 (394)
T ss_pred CccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHH
Confidence 778899999999999988887 599999999999999999999999999998884 56999999999999999999
Q ss_pred HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHH
Q 023565 90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ 169 (280)
Q Consensus 90 ~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (280)
.+|++|+||||+++++.|+.+++.|||+|+.+++ +++++.+.+++.+++. ++++++++.||.++ +|++|+++||++
T Consensus 148 ~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~~~~~~np~~i-eG~~t~a~Ei~e 223 (394)
T PRK08197 148 RAGIRATIFMPADAPEITRLECALAGAELYLVDG--LISDAGKIVAEAVAEY-GWFDVSTLKEPYRI-EGKKTMGLELAE 223 (394)
T ss_pred HcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccCCCCccch-hcHHHHHHHHHH
Confidence 9999999999999999999999999999999984 5788888888888876 78999999999998 699999999999
Q ss_pred hhCC-CCCEEEEecCCchhHHHHHHHHHhc-------CCCcEEEEEeCCCCcccc----CCCC-------CCcccCcccC
Q 023565 170 DSGG-KVDAFISGIGTGGTVTGAGRFLKEN-------NPDIKVYGVEPSESAVLN----GGQR-------GKHLIQGIGA 230 (280)
Q Consensus 170 q~~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~-------~p~~~vigVe~~~~~~~~----~g~~-------~~~~~~glg~ 230 (280)
|++. .||+||+|+|+||+++|++++||++ .+.+|||+|||++++++. .+.. ..++++++..
T Consensus 224 Ql~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~ 303 (394)
T PRK08197 224 QLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRV 303 (394)
T ss_pred HcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhC
Confidence 9975 4999999999999999999999987 388999999999997653 2321 2345556554
Q ss_pred CCCc-c-c-c--ccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 231 GIIP-S-V-L--DIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 231 ~~~~-~-~-~--~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
+... . . + .+++.+.++.|+|+|+++++++|++.+|++ +++|++++
T Consensus 304 ~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l 360 (394)
T PRK08197 304 PKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQL 360 (394)
T ss_pred CCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHH
Confidence 3321 1 1 1 246788999999999999999999988876 67777765
No 50
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=3.5e-51 Score=371.60 Aligned_cols=258 Identities=21% Similarity=0.272 Sum_probs=216.7
Q ss_pred hhhcccCCCcceeccccccCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023565 10 DVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (280)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 88 (280)
+-...+++|||+++++|++.+| .+||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++|
T Consensus 8 ~~~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~a 82 (319)
T PRK06381 8 SEEKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFA 82 (319)
T ss_pred cccccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 3345799999999999998887 699999999999999999999999999999885 5699999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCC-CC-ccHHHHHHhHHHH
Q 023565 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFE-NP-ANPKIHYETTGPE 166 (280)
Q Consensus 89 ~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~~~~g~~t~~~E 166 (280)
+.+|++|+||||+..+..|+++++.|||+|+.++. +++++.+.+++++++. ++|+++|++ || .++ +||.|+++|
T Consensus 83 a~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~-~G~~t~a~E 158 (319)
T PRK06381 83 RLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KYEEAVERSRKFAKEN-GIYDANPGSVNSVVDI-EAYSAIAYE 158 (319)
T ss_pred HHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CHHHHHHHHHHHHHHc-CcEecCCCCCCcchHh-hhHHHHHHH
Confidence 99999999999999999999999999999999995 4788889999988875 788888986 76 455 799999999
Q ss_pred HHHhhCCCCCEEEEecCCchhHHHHHHHHHhc------CCCcEEEEEeCCCCcccc----CCCCC------CcccC-ccc
Q 023565 167 IWQDSGGKVDAFISGIGTGGTVTGAGRFLKEN------NPDIKVYGVEPSESAVLN----GGQRG------KHLIQ-GIG 229 (280)
Q Consensus 167 i~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~------~p~~~vigVe~~~~~~~~----~g~~~------~~~~~-glg 229 (280)
|++|++..||+||+|+|+||+++|++.+||++ .|.++||+|||.+++++. .+... .++.+ .++
T Consensus 159 i~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~ 238 (319)
T PRK06381 159 IYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVN 238 (319)
T ss_pred HHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccC
Confidence 99999667999999999999999999999998 799999999999886442 22211 11111 122
Q ss_pred CCCC-----c----cccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhhh
Q 023565 230 AGII-----P----SVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITYN 276 (280)
Q Consensus 230 ~~~~-----~----~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~~ 276 (280)
.+.. . +.+..++.++++.|+|+|+++++++|++.||++ .||+++++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~ 301 (319)
T PRK06381 239 EPLVSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKYL 301 (319)
T ss_pred CCcccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHH
Confidence 1111 1 123456788999999999999999999988877 677777654
No 51
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=7.4e-51 Score=378.51 Aligned_cols=267 Identities=19% Similarity=0.203 Sum_probs=222.8
Q ss_pred chhHHhh--hcccCCCcceeccccccCCC-ceEEEEeCCC-CCCCchhhHHHHHHHHHHHH--cCCC-------------
Q 023565 5 NAIKRDV--TELIGNTPMVYLNNVVDGCV-ARIAAKLETM-EPCSSVKDRIAYSMIKDAED--KGLI------------- 65 (280)
Q Consensus 5 ~~~~~~i--~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~-~ptGS~K~R~a~~~l~~a~~--~g~~------------- 65 (280)
..+.+++ ...+++|||+++++|++.+| .+||+|+|++ |||||||+|++.+.+..+.. .+.-
T Consensus 30 ~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~ 109 (399)
T PRK08206 30 KKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGE 109 (399)
T ss_pred HHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhH
Confidence 3466778 55899999999999999888 6999999998 49999999999988887653 2210
Q ss_pred ----CCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 023565 66 ----TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKT 141 (280)
Q Consensus 66 ----~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 141 (280)
.++ .+|+++|+||||+|+|++|+.+|++|+||||+++++.|+..++.|||+|+.++. +++++.+.+++++++.
T Consensus 110 ~~~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~ 186 (399)
T PRK08206 110 VREKLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN 186 (399)
T ss_pred HHHhccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc
Confidence 012 249999999999999999999999999999999999999999999999999994 6889999999988876
Q ss_pred CCeEEcC-----CCCC-CccHHHHHHhHHHHHHHhhCC---CCCEEEEecCCchhHHHHHHHHHhcC--CCcEEEEEeCC
Q 023565 142 PDGYLLR-----QFEN-PANPKIHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENN--PDIKVYGVEPS 210 (280)
Q Consensus 142 ~~~~~~~-----~~~~-~~~~~~g~~t~~~Ei~~q~~~---~~d~vv~~vG~Gg~~~Gi~~~~k~~~--p~~~vigVe~~ 210 (280)
+++|++ ||+| |.++.+||.|+++||++|+++ .||+||+|+|+||+++|++.++|+++ +.+|||+|||+
T Consensus 187 -g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~ 265 (399)
T PRK08206 187 -GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPD 265 (399)
T ss_pred -CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCC
Confidence 778886 6765 566668999999999999965 59999999999999999999999984 47899999999
Q ss_pred CCcccc----CCCC------CCcccCcccCCCC---ccccccccCCeEEEeCHHHHHHHHHHhhh----c-------CCc
Q 023565 211 ESAVLN----GGQR------GKHLIQGIGAGII---PSVLDIDILDEVITVSHKIDLHLLHFCCC----S-------SPT 266 (280)
Q Consensus 211 ~~~~~~----~g~~------~~~~~~glg~~~~---~~~~~~~~vd~~~~V~d~ea~~~~~~la~----~-------eG~ 266 (280)
+++++. .|.+ ..++++|++++.. ++.+.++.+|+++.|+|+|+++++++|++ . +|+
T Consensus 266 gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgA 345 (399)
T PRK08206 266 QADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGA 345 (399)
T ss_pred CCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHH
Confidence 998653 3332 1457778766542 44556789999999999999999999995 3 455
Q ss_pred chhhhHHhh
Q 023565 267 LSFQKKITY 275 (280)
Q Consensus 267 ~~~~~~~~~ 275 (280)
+++|++++.
T Consensus 346 a~lAa~~~~ 354 (399)
T PRK08206 346 VGLGALAAL 354 (399)
T ss_pred HHHHHHHHH
Confidence 578888753
No 52
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=3.5e-50 Score=368.41 Aligned_cols=248 Identities=21% Similarity=0.226 Sum_probs=216.0
Q ss_pred hhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 023565 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90 (280)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~ 90 (280)
++..+|.|||+++. .+||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|++|++
T Consensus 58 ~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~ 125 (347)
T PRK08329 58 PHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLS 125 (347)
T ss_pred CcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHH
Confidence 57788999999873 489999999999999999999999999999885 469999999999999999999
Q ss_pred cCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHHh
Q 023565 91 RGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQD 170 (280)
Q Consensus 91 ~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (280)
+|++|+||||+++++.|+.+++.|||+|+.+++ +++++.+.+++++++. +.+|++++.||.++ +||+|+++||++|
T Consensus 126 ~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~~~np~~~-eG~~t~~~Ei~eq 201 (347)
T PRK08329 126 EGIKVHVFVSYNASKEKISLLSRLGAELHFVEG--DRMEVHEEAVKFSKRN-NIPYVSHWLNPYFL-EGTKTIAYEIYEQ 201 (347)
T ss_pred cCCcEEEEECCCChHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeccCCCCchhh-ccchhHHHHHHHH
Confidence 999999999999999999999999999999985 4677778888888775 67889999999988 6999999999999
Q ss_pred hCCCCCEEEEecCCchhHHHHHHHHHhcC------CCcEEEEEeCCCCccccC-CCCCCcccCcccCCCCcc-----ccc
Q 023565 171 SGGKVDAFISGIGTGGTVTGAGRFLKENN------PDIKVYGVEPSESAVLNG-GQRGKHLIQGIGAGIIPS-----VLD 238 (280)
Q Consensus 171 ~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~------p~~~vigVe~~~~~~~~~-g~~~~~~~~glg~~~~~~-----~~~ 238 (280)
++ .||+||+|+|+||+++|++++||++. +.+|||+|||+++.++.. .....+++++++.+.++. .+.
T Consensus 202 l~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l 280 (347)
T PRK08329 202 IG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRAL 280 (347)
T ss_pred cC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHH
Confidence 95 89999999999999999999999874 568999999999876643 234567888888766542 234
Q ss_pred cccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhhh
Q 023565 239 IDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITYN 276 (280)
Q Consensus 239 ~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~~ 276 (280)
+++.+.++.|+|+|+++++++|++ +|++ ++|++.++.
T Consensus 281 ~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l~ 324 (347)
T PRK08329 281 EESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWKLL 324 (347)
T ss_pred HHhCCEEEEECHHHHHHHHHHHHh-cCceECccHHHHHHHHHHHH
Confidence 677889999999999999999986 6765 778877753
No 53
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=3.6e-50 Score=366.19 Aligned_cols=243 Identities=21% Similarity=0.185 Sum_probs=202.5
Q ss_pred hhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 023565 10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (280)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~ 89 (280)
.++.++|+|||++.+ +||+|+|++|||||||||++.++++++.++|. ++|+++||||||.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHH
Confidence 378899999999864 69999999999999999999999999998874 46999999999999999999
Q ss_pred HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHH
Q 023565 90 ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQ 169 (280)
Q Consensus 90 ~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 169 (280)
.+|++++||||+++++.|+.+++.|||+|+.+++ +++++.+. +++. +.+|++++.||.++ +||+|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~--~~~~~~~~----a~~~-g~~~~~~~~np~~i-eG~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG--SREDVAKA----AENS-GYYYASHVLQPQFR-DGIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH----HHhc-CeEeccCCCCccHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999985 45554333 4444 67899999999998 699999999999
Q ss_pred hhCC-CCCEEEEecCCchhHHHHHHHHHhcCC------CcEEEEEeCCCCcccc----CCCC-----CCcccCcccCCCC
Q 023565 170 DSGG-KVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLN----GGQR-----GKHLIQGIGAGII 233 (280)
Q Consensus 170 q~~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~p------~~~vigVe~~~~~~~~----~g~~-----~~~~~~glg~~~~ 233 (280)
|+++ .||+||+|+|+||+++|++++||++.+ .+|||+|||++++++. ++.+ ..+++++|..+..
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~p 269 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTRP 269 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCCC
Confidence 9963 599999999999999999999999875 3799999999987653 2211 2355666655432
Q ss_pred cc-----ccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 234 PS-----VLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 234 ~~-----~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
+. ...++. ++++.|+|+|+++++++|++ +|++ ++|++.++
T Consensus 270 ~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepssaaalAa~~~l 321 (338)
T PRK06450 270 FLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSSATVYAAYKKY 321 (338)
T ss_pred CCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhHHHHHHHHHHC
Confidence 21 112344 89999999999999999987 4665 66777664
No 54
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=5.3e-50 Score=373.43 Aligned_cols=256 Identities=23% Similarity=0.221 Sum_probs=219.6
Q ss_pred hhhcccCCCcceeccccccCCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023565 10 DVTELIGNTPMVYLNNVVDGCVA-RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (280)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 88 (280)
.++..+|+|||++++++++.+|. +||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|++|
T Consensus 60 ~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~a 134 (397)
T PRK06260 60 IVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAYA 134 (397)
T ss_pred cccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 57889999999999999888886 99999999999999999999999999999885 4699999999999999999
Q ss_pred HHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHH
Q 023565 89 AARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (280)
Q Consensus 89 ~~~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (280)
+.+|++++||||++ +++.|+.+++.|||+|+.+++ +++++.+.+++++++. ++|+++++ ||.++ +||+|+++||
T Consensus 135 a~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-np~~~-~G~~t~a~Ei 209 (397)
T PRK06260 135 ARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-NPFRL-EGQKTIGFEI 209 (397)
T ss_pred HHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-Cchhh-cchhhHHHHH
Confidence 99999999999997 789999999999999999984 5888999999988876 78888887 88887 6999999999
Q ss_pred HHhhCC-CCCEEEEecCCchhHHHHHHHHHhcCC------CcEEEEEeCCCCcccc----CCCC-------CCcccCccc
Q 023565 168 WQDSGG-KVDAFISGIGTGGTVTGAGRFLKENNP------DIKVYGVEPSESAVLN----GGQR-------GKHLIQGIG 229 (280)
Q Consensus 168 ~~q~~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~p------~~~vigVe~~~~~~~~----~g~~-------~~~~~~glg 229 (280)
++|+++ .||+||+|+|+||+++|++.+||++.+ .+|||+|||+++.++. .|.. ..++++++.
T Consensus 210 ~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~ 289 (397)
T PRK06260 210 ADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIR 289 (397)
T ss_pred HHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeE
Confidence 999976 699999999999999999999998763 3799999999987552 2322 234555655
Q ss_pred CCCC---c--cccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 230 AGII---P--SVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 230 ~~~~---~--~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
.+.. + ....++..++++.|+|+|++++++.|++.+|++ .+++++++
T Consensus 290 i~~p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaalAa~~~l 347 (397)
T PRK06260 290 IGNPVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKL 347 (397)
T ss_pred eCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHH
Confidence 4321 1 113456678899999999999999999988886 67777765
No 55
>PLN02569 threonine synthase
Probab=100.00 E-value=5.3e-49 Score=371.97 Aligned_cols=258 Identities=16% Similarity=0.107 Sum_probs=218.1
Q ss_pred hhcccCCCcceeccccccC-CC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023565 11 VTELIGNTPMVYLNNVVDG-CV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (280)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~-~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 88 (280)
++.++|+|||++++++.+. .| .+||+|+|++|||||||||++.+++..+.+.|.......+|+++||||||.|+|++|
T Consensus 127 vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAaya 206 (484)
T PLN02569 127 VSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYC 206 (484)
T ss_pred eecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHH
Confidence 6788999999999999887 77 489999999999999999999999999988665321124599999999999999999
Q ss_pred HHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHH
Q 023565 89 AARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEI 167 (280)
Q Consensus 89 ~~~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 167 (280)
+.+|++++||||++ .+..|+.+++.|||+|+.+++ +++++.+.+++++++. ++|+++++ ||.++ +||+|+++||
T Consensus 207 a~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~i-eG~kT~a~EI 281 (484)
T PLN02569 207 AAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANSL-NSLRL-EGQKTAAIEI 281 (484)
T ss_pred HhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCCC-Ccchh-HhHHHHHHHH
Confidence 99999999999996 788999999999999999994 6899999999988876 68889988 99988 6999999999
Q ss_pred HHhhCCC-CCEEEEecCCchhHHHHHHHHHhcC------CCcEEEEEeCCCCcccc----CCC-------CCCcccCccc
Q 023565 168 WQDSGGK-VDAFISGIGTGGTVTGAGRFLKENN------PDIKVYGVEPSESAVLN----GGQ-------RGKHLIQGIG 229 (280)
Q Consensus 168 ~~q~~~~-~d~vv~~vG~Gg~~~Gi~~~~k~~~------p~~~vigVe~~~~~~~~----~g~-------~~~~~~~glg 229 (280)
++|++++ ||+||+|+|+||+++|++++||++. +.+|||+||+++++++. .|. ..++++++|+
T Consensus 282 ~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~ 361 (484)
T PLN02569 282 LQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQ 361 (484)
T ss_pred HHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhhc
Confidence 9999765 9999999999999999999999874 45799999999987653 232 1456778887
Q ss_pred CCCCcccc------ccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 230 AGIIPSVL------DIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 230 ~~~~~~~~------~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
.+. |..+ .++.-+.++.|+|+|+++++++ ++.+|++ ++|++.++
T Consensus 362 i~~-P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssAaalAal~kl 418 (484)
T PLN02569 362 IGD-PVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCPHTGVALAALKKL 418 (484)
T ss_pred cCC-CccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECchHHHHHHHHHHH
Confidence 763 3332 1233456799999999999999 7777764 77777765
No 56
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=1.1e-48 Score=368.95 Aligned_cols=253 Identities=17% Similarity=0.166 Sum_probs=212.9
Q ss_pred hhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHH
Q 023565 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90 (280)
Q Consensus 11 i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~ 90 (280)
++..+|+|||++++ +++.+|.+||+|+|++|||||||||++.+++.+|.+.|. ++||++|+||||+|+|++|+.
T Consensus 60 v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~ 133 (442)
T PRK05638 60 ISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSAR 133 (442)
T ss_pred cccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHHH
Confidence 67899999999984 666678899999999999999999999999999998874 569999999999999999999
Q ss_pred cCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHHh
Q 023565 91 RGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQD 170 (280)
Q Consensus 91 ~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (280)
+|++|+||||+++++.|+.+++.|||+|+.++ ++++++.+.+++++++. ++|++++++||.++ +||+|+++||++|
T Consensus 134 ~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~--~~~~~~~~~a~~~~~~~-~~~~~~~~~np~~~-eG~~t~a~Ei~eq 209 (442)
T PRK05638 134 AGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYG--ESVDEAIEYAEELARLN-GLYNVTPEYNIIGL-EGQKTIAFELWEE 209 (442)
T ss_pred cCCCEEEEEeCCCCHHHHHHHHhcCcEEEEEC--CCHHHHHHHHHHHHHhC-CeEecCCCCChhHh-hhHHHHHHHHHHH
Confidence 99999999999999999999999999999998 46889999999988775 78999999999998 6999999999999
Q ss_pred hCCCCCEEEEecCCchhHHHHHHHHHhcCCC------cEEEEEeCCCCcccc----CCC--CCCcccCcccCCCCc--c-
Q 023565 171 SGGKVDAFISGIGTGGTVTGAGRFLKENNPD------IKVYGVEPSESAVLN----GGQ--RGKHLIQGIGAGIIP--S- 235 (280)
Q Consensus 171 ~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~------~~vigVe~~~~~~~~----~g~--~~~~~~~glg~~~~~--~- 235 (280)
++ ||+||+|+|+||+++|++.+|+++++. +|||+|||++++++. .+. ...+.+.++..+... .
T Consensus 210 ~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~p~~~~~ 287 (442)
T PRK05638 210 IN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKEY 287 (442)
T ss_pred HC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCCCCCHHH
Confidence 94 999999999999999999999998753 699999999887543 222 133455565443221 1
Q ss_pred --ccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhhh
Q 023565 236 --VLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITYN 276 (280)
Q Consensus 236 --~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~~ 276 (280)
...++..+.++.|+|+++.++.+++++ +|++ ++||++++.
T Consensus 288 ~~~~i~~~~g~~~~v~d~~i~~a~~~l~~-eGi~~epssaaa~Aa~~~~~ 336 (442)
T PRK05638 288 VSEAIKESGGTAVVVNEEEIMAGEKLLAK-EGIFAELSSAVVMPALLKLG 336 (442)
T ss_pred HHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceecchHHHHHHHHHHHH
Confidence 123455677888998888888777754 5664 788887763
No 57
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=7.2e-49 Score=361.91 Aligned_cols=265 Identities=17% Similarity=0.208 Sum_probs=220.3
Q ss_pred chhHHhhhcccCCCcceeccccccCCC-ceEEEEeCCCCC-CCchhhHHHHHHHHHHHHc----------------CCCC
Q 023565 5 NAIKRDVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEP-CSSVKDRIAYSMIKDAEDK----------------GLIT 66 (280)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~p-tGS~K~R~a~~~l~~a~~~----------------g~~~ 66 (280)
...++++..+ .+|||+++++|++.+| .+||+|+|++|+ |||||+|++.+.+..+.++ +.++
T Consensus 11 ~~~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (376)
T TIGR01747 11 LAFHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIG 89 (376)
T ss_pred HHHHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHH
Confidence 3456677655 9999999999999899 599999999985 8999999999999887542 1211
Q ss_pred --CCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCe
Q 023565 67 --PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDG 144 (280)
Q Consensus 67 --~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 144 (280)
.+..+||++|+||||+|+|++|+.+|+||+||||+++++.|+..++.|||+|+.+++ +++++.+.+++++++. ++
T Consensus 90 ~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~ 166 (376)
T TIGR01747 90 EKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GW 166 (376)
T ss_pred hhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-Cc
Confidence 124569999999999999999999999999999999999999999999999999984 6889999999988876 67
Q ss_pred EEcC-----CCCC--CccHHHHHHhHHHHHHHhhCC----CCCEEEEecCCchhHHHHHHHHHhcC-CC-cEEEEEeCCC
Q 023565 145 YLLR-----QFEN--PANPKIHYETTGPEIWQDSGG----KVDAFISGIGTGGTVTGAGRFLKENN-PD-IKVYGVEPSE 211 (280)
Q Consensus 145 ~~~~-----~~~~--~~~~~~g~~t~~~Ei~~q~~~----~~d~vv~~vG~Gg~~~Gi~~~~k~~~-p~-~~vigVe~~~ 211 (280)
++++ +|++ |.. .+||+|+++||++|++. .||+||+|+|+||+++|++.++++.. |. ++||+|||++
T Consensus 167 ~~~~~~~~~~~~~~~~~i-i~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~g 245 (376)
T TIGR01747 167 VVVQDTAWEGYEKIPTWI-MQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDK 245 (376)
T ss_pred EEeccccccccccCCchH-HHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCC
Confidence 8876 4655 443 47999999999999952 79999999999999999999998765 43 6999999999
Q ss_pred Ccccc----C--CCC------CCcccCcccCCCC---ccccccccCCeEEEeCHHHHHHHHHHhhhc-----------CC
Q 023565 212 SAVLN----G--GQR------GKHLIQGIGAGII---PSVLDIDILDEVITVSHKIDLHLLHFCCCS-----------SP 265 (280)
Q Consensus 212 ~~~~~----~--g~~------~~~~~~glg~~~~---~~~~~~~~vd~~~~V~d~ea~~~~~~la~~-----------eG 265 (280)
++++. . +++ ..++++||+++.+ ++.+.++.+|.++.|+|+|+.+++++|+++ .|
T Consensus 246 a~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epag 325 (376)
T TIGR01747 246 ADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESG 325 (376)
T ss_pred CCHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCch
Confidence 98753 2 332 2468888887643 566778899999999999999999988764 45
Q ss_pred cchhhhHHh
Q 023565 266 TLSFQKKIT 274 (280)
Q Consensus 266 ~~~~~~~~~ 274 (280)
++++|+|..
T Consensus 326 a~~la~l~~ 334 (376)
T TIGR01747 326 AVGLGLLAA 334 (376)
T ss_pred HHHHHHHHH
Confidence 678888774
No 58
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=1.1e-47 Score=336.06 Aligned_cols=219 Identities=39% Similarity=0.581 Sum_probs=201.5
Q ss_pred CcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEE
Q 023565 18 TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII 97 (280)
Q Consensus 18 TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~i 97 (280)
|||++++++++..+.+||+|+|++|||||||||++.+++..+.++|.+ ++ .+||++||||||+|+|++|+.+|+++++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999887778999999999999999999999999999998865 43 4599999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHHhhCC-CCC
Q 023565 98 VMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGG-KVD 176 (280)
Q Consensus 98 vvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~-~~d 176 (280)
|+|++.++.|+++++.+||+|+.++. +++++.+.+++++++.++++|++||+|+.++ .||.++++||.+|++. .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~-~g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPG--DFDDAIALAKELAEEDPGAYYVNQFDNPANI-AGQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhCCCCEecCCCCCHHHH-HHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999995 4789999999999885689999999999998 6889999999999965 599
Q ss_pred EEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCcccCcccCCCCccccccccCCeEEEeCHHHHHHH
Q 023565 177 AFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVITVSHKIDLHL 256 (280)
Q Consensus 177 ~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~~~V~d~ea~~~ 256 (280)
+||+|+|+||+++|++.++|+.+|.+|||+||| +++.|+|+|++++
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~----------------------------------~~~~v~d~~~~~a 201 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP----------------------------------EVVTVSDEEALEA 201 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee----------------------------------eEEEECHHHHHHH
Confidence 999999999999999999999999999999998 7899999999999
Q ss_pred HHHhhhcCCcc-------hhhhHHhh
Q 023565 257 LHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 257 ~~~la~~eG~~-------~~~~~~~~ 275 (280)
++.|++.+|++ +++++.++
T Consensus 202 ~~~l~~~~gi~~~pssa~~~aa~~~~ 227 (244)
T cd00640 202 IRLLAREEGILVEPSSAAALAAALKL 227 (244)
T ss_pred HHHHHHHcCceECHhHHHHHHHHHHH
Confidence 99999988876 55555544
No 59
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=5.3e-48 Score=352.06 Aligned_cols=256 Identities=20% Similarity=0.178 Sum_probs=215.3
Q ss_pred HhhhcccCCCcceeccccccCCCc-eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHH
Q 023565 9 RDVTELIGNTPMVYLNNVVDGCVA-RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI 87 (280)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~-~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~ 87 (280)
+++...+++|||+++++++...+. +||+|+|++|||||||||++.+++.++.++|. .+||++|+||||+|+|++
T Consensus 15 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~~ 89 (328)
T TIGR00260 15 DLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAAY 89 (328)
T ss_pred hhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHH
Confidence 357778899999999999888886 99999999999999999999999999998874 469999999999999999
Q ss_pred HHHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCC-CCccHHHHHHhHHH
Q 023565 88 AAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFE-NPANPKIHYETTGP 165 (280)
Q Consensus 88 a~~~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~ 165 (280)
|+.+|++|+||||++ +++.|+..++.+||+|+.+++ +++++.+.+++++++. +.+++++++ +|.++ .||.|+++
T Consensus 90 a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~~-~g~~t~~~ 165 (328)
T TIGR00260 90 AGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNSVNSIPYRL-EGQKTYAF 165 (328)
T ss_pred hccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-CeeecccCCCCCeEe-eeehhHHH
Confidence 999999999999998 899999999999999999994 6889999999988876 455555542 27777 68999999
Q ss_pred HHHHhhCC-CCCEEEEecCCchhHHHHHHHHHhc-------CCCcEEEEEeCCCCcccc-----CCCCC-----CcccCc
Q 023565 166 EIWQDSGG-KVDAFISGIGTGGTVTGAGRFLKEN-------NPDIKVYGVEPSESAVLN-----GGQRG-----KHLIQG 227 (280)
Q Consensus 166 Ei~~q~~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~-------~p~~~vigVe~~~~~~~~-----~g~~~-----~~~~~g 227 (280)
||++|+++ .||+||+|+|+||+++|++.++++. .| +|++|||.+++++. .+++. .+.+++
T Consensus 166 Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p--~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~ 243 (328)
T TIGR00260 166 EAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLP--VKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTA 243 (328)
T ss_pred HHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCC--ceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcc
Confidence 99999964 7999999999999999999999984 45 99999999985332 33221 345566
Q ss_pred ccCCCCcc------ccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhhh
Q 023565 228 IGAGIIPS------VLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITYN 276 (280)
Q Consensus 228 lg~~~~~~------~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~~ 276 (280)
++.+. |. .+.++++|+++.|+|+|+++++++|++.+|++ ++++++++.
T Consensus 244 l~~~~-p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~ 304 (328)
T TIGR00260 244 IDIGN-PANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLV 304 (328)
T ss_pred eecCC-CCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHH
Confidence 65542 22 23457899999999999999999999977776 777777653
No 60
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=9.3e-48 Score=356.73 Aligned_cols=262 Identities=18% Similarity=0.182 Sum_probs=212.2
Q ss_pred hHHhhhcccCCCcceeccccccCCC-ceEEEEeCCCCC-CCchhhHHHHHHHHHHHH--cCCC--------------C--
Q 023565 7 IKRDVTELIGNTPMVYLNNVVDGCV-ARIAAKLETMEP-CSSVKDRIAYSMIKDAED--KGLI--------------T-- 66 (280)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g-~~l~~K~E~~~p-tGS~K~R~a~~~l~~a~~--~g~~--------------~-- 66 (280)
.+.++. .+.+|||+++++|++.+| .+||+|+|++|+ |||||+||+.+.+..+.+ .|.. +
T Consensus 32 ~~~~~~-~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~ 110 (396)
T TIGR03528 32 FHQSFP-GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREK 110 (396)
T ss_pred HHhcCC-CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhh
Confidence 444553 559999999999999888 699999999985 999999999999987532 2210 0
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEE
Q 023565 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYL 146 (280)
Q Consensus 67 ~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (280)
....+||++|+||||+|+|++|+.+|++|+||||+++++.|+..++.|||+|+.++. +++++.+.+++++++. +++|
T Consensus 111 ~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~ 187 (396)
T TIGR03528 111 LGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVM 187 (396)
T ss_pred ccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEe
Confidence 012269999999999999999999999999999999999999999999999999984 6889999999998876 6788
Q ss_pred cC-----CCCCC-ccHHHHHHhHHHHHHHhhC----CCCCEEEEecCCchhHHHHHHHHHhc-CCC-cEEEEEeCCCCcc
Q 023565 147 LR-----QFENP-ANPKIHYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKEN-NPD-IKVYGVEPSESAV 214 (280)
Q Consensus 147 ~~-----~~~~~-~~~~~g~~t~~~Ei~~q~~----~~~d~vv~~vG~Gg~~~Gi~~~~k~~-~p~-~~vigVe~~~~~~ 214 (280)
++ +|+|. ....+||+|+++||++|++ +.||+||+|+|+||+++|++.++++. .+. ++||+|||+++++
T Consensus 188 v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~ 267 (396)
T TIGR03528 188 VQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADC 267 (396)
T ss_pred eccccccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCch
Confidence 75 57652 2234799999999999995 26999999999999999999999554 444 4999999999886
Q ss_pred ccC------CCC------CCcccCcccCCC---CccccccccCCeEEEeCHHHHHHHHHHhhh-----------cCCcch
Q 023565 215 LNG------GQR------GKHLIQGIGAGI---IPSVLDIDILDEVITVSHKIDLHLLHFCCC-----------SSPTLS 268 (280)
Q Consensus 215 ~~~------g~~------~~~~~~glg~~~---~~~~~~~~~vd~~~~V~d~ea~~~~~~la~-----------~eG~~~ 268 (280)
+.. +.+ ..++++|++++. .++.+.++++|+++.|+|+|+.+++++|++ +.|+++
T Consensus 268 l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~ 347 (396)
T TIGR03528 268 LYRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVG 347 (396)
T ss_pred HHHHHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHH
Confidence 631 322 235777887643 234556789999999999999999998855 566778
Q ss_pred hhhH
Q 023565 269 FQKK 272 (280)
Q Consensus 269 ~~~~ 272 (280)
+|+|
T Consensus 348 ~Aal 351 (396)
T TIGR03528 348 TGLL 351 (396)
T ss_pred HHHH
Confidence 8555
No 61
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1e-46 Score=348.71 Aligned_cols=260 Identities=20% Similarity=0.214 Sum_probs=206.1
Q ss_pred hhcccC-CCcceeccccccCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023565 11 VTELIG-NTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (280)
Q Consensus 11 i~~~~~-~TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 88 (280)
+..+++ +|||++++++++.+ +.+||+|+|++|||||||+|.+...+..+.+.|+ ...|+++|+||||+|+|++|
T Consensus 55 ~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aa 130 (402)
T PRK13028 55 LKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAA 130 (402)
T ss_pred HHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence 456676 79999999999888 5899999999999999999999999999998885 34466789999999999999
Q ss_pred HHcCCcEEEEeCCCCCH---HHHHHHHHCCCEEEEECC-CCCHHHHHHHHHH-HHHhCCCeEEcCC-CC----CCccHHH
Q 023565 89 AARGYNLIIVMPSTCSM---ERRIVLRALGAEIILADS-ALRFEEILEKGEE-ILKKTPDGYLLRQ-FE----NPANPKI 158 (280)
Q Consensus 89 ~~~G~~~~ivvp~~~~~---~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~~~-~~----~~~~~~~ 158 (280)
+.+|++|+||||+..++ .++.+|+.+||+|+.++. ..+++++.+.+.+ .+++.++.+|+.+ .. .|.++..
T Consensus 131 a~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~ 210 (402)
T PRK13028 131 ALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRD 210 (402)
T ss_pred HHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHH
Confidence 99999999999986443 568899999999999984 3468888888754 4555345666632 11 2445556
Q ss_pred HHHhHHHHHHHhh----CCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCC--------CccccCCCC------
Q 023565 159 HYETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE--------SAVLNGGQR------ 220 (280)
Q Consensus 159 g~~t~~~Ei~~q~----~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~--------~~~~~~g~~------ 220 (280)
||++++.|+.+|+ +..||+||+|+|+||+++|++.+|++ .|+++||||||.+ ++++..|.+
T Consensus 211 ~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~ 289 (402)
T PRK13028 211 FQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGF 289 (402)
T ss_pred HhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceeccc
Confidence 9999999999997 23699999999999999999999986 4899999999998 556654443
Q ss_pred --------------CCcccCcccCCCC-cc--ccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 221 --------------GKHLIQGIGAGII-PS--VLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 221 --------------~~~~~~glg~~~~-~~--~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
..+++.||+.+.+ |. .+.....++.+.|+|+|++++++.|++.||++ ++|++++.
T Consensus 290 ~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~ 368 (402)
T PRK13028 290 KSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKL 368 (402)
T ss_pred ceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHh
Confidence 1234556654322 32 23455678999999999999999999999998 45555543
No 62
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=1.5e-46 Score=347.17 Aligned_cols=260 Identities=18% Similarity=0.229 Sum_probs=202.5
Q ss_pred hhcccC-CCcceeccccccCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023565 11 VTELIG-NTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (280)
Q Consensus 11 i~~~~~-~TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 88 (280)
+..++| +|||+++++|++.+ +.+||+|+|++|||||||+|.+...+..|.+.|+ ...|+++|+||||+|+|++|
T Consensus 51 ~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~a 126 (397)
T PRK04346 51 LKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAA 126 (397)
T ss_pred HHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence 456777 59999999999988 5899999999999999999999999999998885 34466689999999999999
Q ss_pred HHcCCcEEEEeCCCC-C--HHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHH-HHHhCCCeEEc-CCCCC----CccHHH
Q 023565 89 AARGYNLIIVMPSTC-S--MERRIVLRALGAEIILADS-ALRFEEILEKGEE-ILKKTPDGYLL-RQFEN----PANPKI 158 (280)
Q Consensus 89 ~~~G~~~~ivvp~~~-~--~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~-~~~~~----~~~~~~ 158 (280)
+++|++|+||||+.. + ..++.+|+.+||+|+.++. +.+++++.+.+.+ .+++.++.+|+ .++.+ |.++..
T Consensus 127 a~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~ 206 (397)
T PRK04346 127 ALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRD 206 (397)
T ss_pred HHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHH
Confidence 999999999999853 3 3577899999999999984 3467766665544 45543355565 22222 344556
Q ss_pred HHHhHHHHHHHhhC----CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCCC------
Q 023565 159 HYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA--------VLNGGQR------ 220 (280)
Q Consensus 159 g~~t~~~Ei~~q~~----~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~--------~~~~g~~------ 220 (280)
||++++.||++|+. ..||+||+|+|+||+++|++.+|+. .|++|||||||.++. ++..|++
T Consensus 207 ~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~ 285 (397)
T PRK04346 207 FQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGA 285 (397)
T ss_pred hcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccc
Confidence 99999999999973 3699999999999999999999976 899999999999862 2222322
Q ss_pred --------------CCcccCcccCCCC-c--cccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 221 --------------GKHLIQGIGAGII-P--SVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 221 --------------~~~~~~glg~~~~-~--~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
..++..||..+.+ | ..+.+...++.+.|+|+|+++++++|++.||++ .+|++++.
T Consensus 286 ~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kl 364 (397)
T PRK04346 286 KTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKL 364 (397)
T ss_pred cceecccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHh
Confidence 1234455544332 2 233456678999999999999999999999998 45555543
No 63
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.4e-46 Score=348.49 Aligned_cols=262 Identities=18% Similarity=0.204 Sum_probs=202.1
Q ss_pred HhhhcccC-CCcceeccccccCCC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023565 9 RDVTELIG-NTPMVYLNNVVDGCV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (280)
Q Consensus 9 ~~i~~~~~-~TPl~~~~~l~~~~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~ 86 (280)
+.+..+++ +|||++++++++.+| .+||+|+|++|||||||+|++..++..+.++|. ...|+++|+||||+|+|+
T Consensus 41 ~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~ 116 (385)
T TIGR00263 41 ELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATAT 116 (385)
T ss_pred HHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHH
Confidence 33445565 899999999998877 799999999999999999999999999988774 343557999999999999
Q ss_pred HHHHcCCcEEEEeCCC-CCH--HHHHHHHHCCCEEEEECCC-CCHHHHHHH-HHHHHHhCCCeEEc-CCCCC----CccH
Q 023565 87 IAAARGYNLIIVMPST-CSM--ERRIVLRALGAEIILADSA-LRFEEILEK-GEEILKKTPDGYLL-RQFEN----PANP 156 (280)
Q Consensus 87 ~a~~~G~~~~ivvp~~-~~~--~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~-a~~~~~~~~~~~~~-~~~~~----~~~~ 156 (280)
+|+.+|++|+||||+. .+. .++++|+.|||+|+.++.. +.++++.+. +++++++.++.+|+ .++.+ +.++
T Consensus 117 ~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~ 196 (385)
T TIGR00263 117 AAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMV 196 (385)
T ss_pred HHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHH
Confidence 9999999999999985 443 5788999999999999853 346666444 44445554455666 33332 3455
Q ss_pred HHHHHhHHHHHHHhhC----CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCCC----
Q 023565 157 KIHYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA--------VLNGGQR---- 220 (280)
Q Consensus 157 ~~g~~t~~~Ei~~q~~----~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~--------~~~~g~~---- 220 (280)
..||+|+++||++|+. ..||+||+|+|+||+++|++.++.. .|++|||||||+++. ++..+.+
T Consensus 197 ~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~ 275 (385)
T TIGR00263 197 RDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLH 275 (385)
T ss_pred HHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEec
Confidence 6799999999999973 2589999999999999999998855 699999999999852 2333322
Q ss_pred ----------------CCcccCcccCCCC-c--cccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHh
Q 023565 221 ----------------GKHLIQGIGAGII-P--SVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKIT 274 (280)
Q Consensus 221 ----------------~~~~~~glg~~~~-~--~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~ 274 (280)
..+++++++.... | +.+....+|+++.|+|+|++++++.|++.||++ +++++++
T Consensus 276 ~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~ 355 (385)
T TIGR00263 276 GMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEK 355 (385)
T ss_pred CcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHH
Confidence 1133445544322 2 233455688999999999999999999999988 5666665
Q ss_pred h
Q 023565 275 Y 275 (280)
Q Consensus 275 ~ 275 (280)
+
T Consensus 356 ~ 356 (385)
T TIGR00263 356 I 356 (385)
T ss_pred H
Confidence 4
No 64
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-47 Score=326.78 Aligned_cols=258 Identities=36% Similarity=0.606 Sum_probs=225.1
Q ss_pred HhhhcccCCCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023565 9 RDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (280)
Q Consensus 9 ~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 88 (280)
+-+...+|+|||++++.|++..||+|+.|.|++||.||.|||.|.+++..|+++|++-||.. |++.|+||+|+++|..|
T Consensus 41 ~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~-v~EGtaGsTgIslA~v~ 119 (391)
T KOG1481|consen 41 SGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGT-VVEGTAGSTGISLAHVA 119 (391)
T ss_pred chhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCce-EEecCCCccchhHHHhh
Confidence 35667899999999999999999999999999999999999999999999999999999966 99999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHHHhCC------CeEEcCCCCCCccHHHHH
Q 023565 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKTP------DGYLLRQFENPANPKIHY 160 (280)
Q Consensus 89 ~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~g~ 160 (280)
..+|++|+|+||++.+.+|.+.++.+||+|..|++.. +-+.-...|++.+.+.+ ..+|.+||+|+.|+.+||
T Consensus 120 ~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHy 199 (391)
T KOG1481|consen 120 RALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHY 199 (391)
T ss_pred hhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHh
Confidence 9999999999999999999999999999999997632 11233333433333322 237789999999999999
Q ss_pred HhHHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCC-cEEEEEeCCCCcccc-------------CCC----CCC
Q 023565 161 ETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPD-IKVYGVEPSESAVLN-------------GGQ----RGK 222 (280)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~-~~vigVe~~~~~~~~-------------~g~----~~~ 222 (280)
.++|+|||.|.++++|++++.+|+|||++|+.+++|+..+. +.++..+|.+|..+. +|. +..
T Consensus 200 etTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~d 279 (391)
T KOG1481|consen 200 ETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVD 279 (391)
T ss_pred cCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcc
Confidence 99999999999999999999999999999999999999887 899999999985321 122 245
Q ss_pred cccCcccCCCCcccc--ccccCCeEEEeCHHHHHHHHHHhhhcCCcc
Q 023565 223 HLIQGIGAGIIPSVL--DIDILDEVITVSHKIDLHLLHFCCCSSPTL 267 (280)
Q Consensus 223 ~~~~glg~~~~~~~~--~~~~vd~~~~V~d~ea~~~~~~la~~eG~~ 267 (280)
++.+|+|.+.++.++ ..+++|+.+.|+|++++.+.++|...+|.|
T Consensus 280 ti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLF 326 (391)
T KOG1481|consen 280 TITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLF 326 (391)
T ss_pred hhhhcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceE
Confidence 788999998887765 467899999999999999999999999987
No 65
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=2.4e-46 Score=345.23 Aligned_cols=263 Identities=19% Similarity=0.190 Sum_probs=203.3
Q ss_pred HHhhhccc-CCCcceeccccccCC-CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHHH
Q 023565 8 KRDVTELI-GNTPMVYLNNVVDGC-VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIE-VTSGNTGVGL 84 (280)
Q Consensus 8 ~~~i~~~~-~~TPl~~~~~l~~~~-g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~-~SsGN~g~al 84 (280)
+....+++ .+|||++++++++.+ +.+||+|+|++|||||||+|.+..++..+.++|. .++|+ +|+||||+|+
T Consensus 24 ~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~-----~~vv~~~ssGN~g~al 98 (365)
T cd06446 24 RELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK-----KRVIAETGAGQHGVAT 98 (365)
T ss_pred HHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHH
Confidence 34445554 499999999999877 5899999999999999999999999999988885 23555 6899999999
Q ss_pred HHHHHHcCCcEEEEeCCCCC---HHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHH-HHhCCC-eEEcCCC----CCCc
Q 023565 85 AFIAAARGYNLIIVMPSTCS---MERRIVLRALGAEIILADSA-LRFEEILEKGEEI-LKKTPD-GYLLRQF----ENPA 154 (280)
Q Consensus 85 A~~a~~~G~~~~ivvp~~~~---~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~a~~~-~~~~~~-~~~~~~~----~~~~ 154 (280)
|++|+.+|++|+||||+..+ +.|+.+++.+||+|+.++.. +.++++...+.+. +++.++ .|++.++ .++.
T Consensus 99 A~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~ 178 (365)
T cd06446 99 ATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPN 178 (365)
T ss_pred HHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchH
Confidence 99999999999999998644 36788999999999999853 2356665545444 333213 4444332 1234
Q ss_pred cHHHHHHhHHHHHHHhhC----CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCC--------C---
Q 023565 155 NPKIHYETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGG--------Q--- 219 (280)
Q Consensus 155 ~~~~g~~t~~~Ei~~q~~----~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g--------~--- 219 (280)
++.+||+|+++||++|++ ..||+||+|+|+||+++|++.+++. .+++|||+|||.+++.+... .
T Consensus 179 ~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~ 257 (365)
T cd06446 179 MVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGV 257 (365)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcce
Confidence 566899999999999985 3699999999999999999998887 56899999999998766421 1
Q ss_pred -----------------CCCcccCcccCCC-Cc--cccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhH
Q 023565 220 -----------------RGKHLIQGIGAGI-IP--SVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKK 272 (280)
Q Consensus 220 -----------------~~~~~~~glg~~~-~~--~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~ 272 (280)
+..+++++++.+. .+ +.+.++++|+++.|+|+|+++++++|+++||++ +++++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa~ 337 (365)
T cd06446 258 LHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYA 337 (365)
T ss_pred ecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHHH
Confidence 1123445565422 22 224567899999999999999999999988887 67777
Q ss_pred Hhhh
Q 023565 273 ITYN 276 (280)
Q Consensus 273 ~~~~ 276 (280)
+++.
T Consensus 338 ~~~~ 341 (365)
T cd06446 338 IKLA 341 (365)
T ss_pred HHHH
Confidence 7653
No 66
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=4.3e-46 Score=347.11 Aligned_cols=260 Identities=20% Similarity=0.219 Sum_probs=203.4
Q ss_pred hHHhhhcccCCCcceeccccccCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHH
Q 023565 7 IKRDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIE-VTSGNTGVG 83 (280)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~-~SsGN~g~a 83 (280)
+.+++....++|||+++++|++.+| ++||+|+|++|||||||+|++.+++.++.++|. .++++ +|+||||+|
T Consensus 58 v~~~~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~a 132 (419)
T TIGR01415 58 VLKRYAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA-----KRLVTETGAGQWGSA 132 (419)
T ss_pred HHHHHHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHH
Confidence 3344444446899999999998776 699999999999999999999999999999985 23665 688999999
Q ss_pred HHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHCCCEEEEECCCCCHHH------------------HHHHHHHHHHhCC
Q 023565 84 LAFIAAARGYNLIIVMPSTC---SMERRIVLRALGAEIILADSALRFEE------------------ILEKGEEILKKTP 142 (280)
Q Consensus 84 lA~~a~~~G~~~~ivvp~~~---~~~~~~~l~~~Ga~v~~~~~~~~~~~------------------~~~~a~~~~~~~~ 142 (280)
+|++|+.+|++|+||||+.. ++.|+.+|+.|||+|+.++.+ +++ ++..+.+.+++++
T Consensus 133 lA~aaa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~ 210 (419)
T TIGR01415 133 LSLAGALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDE 210 (419)
T ss_pred HHHHHHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCC
Confidence 99999999999999999854 568999999999999999853 222 3556777776644
Q ss_pred -CeEEcCCCCCCccHHHHHHhHHHHHHHhhCC---CCCEEEEecCCchhHHHHHHHHHhc----CCCcEEEEEeCCCCcc
Q 023565 143 -DGYLLRQFENPANPKIHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKEN----NPDIKVYGVEPSESAV 214 (280)
Q Consensus 143 -~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~---~~d~vv~~vG~Gg~~~Gi~~~~k~~----~p~~~vigVe~~~~~~ 214 (280)
..|++.++.|+ ...||.++++||++|++. .||+||+|+|+||+++|++.+|.+. .+++|||+|||+++++
T Consensus 211 ~~~y~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~ 288 (419)
T TIGR01415 211 DTKYSLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPT 288 (419)
T ss_pred CCEEEeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChh
Confidence 34555555452 347999999999999953 4999999999999999999888332 3689999999999987
Q ss_pred ccCCCC----------CC-cccCcccCCCCccc-----------------cccccCCeEEEeCHHHHHHHHHHhhhcCCc
Q 023565 215 LNGGQR----------GK-HLIQGIGAGIIPSV-----------------LDIDILDEVITVSHKIDLHLLHFCCCSSPT 266 (280)
Q Consensus 215 ~~~g~~----------~~-~~~~glg~~~~~~~-----------------~~~~~vd~~~~V~d~ea~~~~~~la~~eG~ 266 (280)
+..+.. .+ ..+.++|.+++|.. +.++.+++++.|+|+|+++++++|++.||+
T Consensus 289 l~~g~~~yd~~~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi 368 (419)
T TIGR01415 289 LTRGEYRYDFGDTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGI 368 (419)
T ss_pred hhcCcccccccccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCC
Confidence 765431 01 22345555444332 123455678999999999999999999988
Q ss_pred c-------hhhhHHhh
Q 023565 267 L-------SFQKKITY 275 (280)
Q Consensus 267 ~-------~~~~~~~~ 275 (280)
+ .++++++.
T Consensus 369 ~~epssa~alaaai~~ 384 (419)
T TIGR01415 369 VPAPESAHAIAAAIDE 384 (419)
T ss_pred ccccHHHHHHHHHHHH
Confidence 7 67777764
No 67
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=7.8e-46 Score=342.94 Aligned_cols=262 Identities=19% Similarity=0.245 Sum_probs=202.7
Q ss_pred hHHhhhcccC-CCcceeccccccCC------CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCCh
Q 023565 7 IKRDVTELIG-NTPMVYLNNVVDGC------VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGN 79 (280)
Q Consensus 7 ~~~~i~~~~~-~TPl~~~~~l~~~~------g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN 79 (280)
....+..++| +|||+++++|++.+ |++||+|+|++|||||||+|.+...+..+.+.|+ ...|+++|+||
T Consensus 55 ~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGN 130 (410)
T PLN02618 55 LAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQ 130 (410)
T ss_pred HHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHH
Confidence 3455778896 89999999999876 5899999999999999999999999888888774 33344666899
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHCCCEEEEECC-CCCHHHHHHH-HHHHHHhCCCeEEc-------
Q 023565 80 TGVGLAFIAAARGYNLIIVMPSTC---SMERRIVLRALGAEIILADS-ALRFEEILEK-GEEILKKTPDGYLL------- 147 (280)
Q Consensus 80 ~g~alA~~a~~~G~~~~ivvp~~~---~~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~-a~~~~~~~~~~~~~------- 147 (280)
||+|+|++|+.+|++|+||||+.. +..|+.+|+.|||+|+.++. ..+++++... +++++++..+.+|+
T Consensus 131 hG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp 210 (410)
T PLN02618 131 HGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGP 210 (410)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCC
Confidence 999999999999999999999864 35677899999999999964 3567777644 45566653345565
Q ss_pred CCCCCCccHHHHHHhHHHHHHHhh----CCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCC--------ccc
Q 023565 148 RQFENPANPKIHYETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES--------AVL 215 (280)
Q Consensus 148 ~~~~~~~~~~~g~~t~~~Ei~~q~----~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~--------~~~ 215 (280)
+|| +.....+++++|.||.+|+ +..||+||+|+|+||+++|++.+|+. .|++|||||||.++ .++
T Consensus 211 ~P~--~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l 287 (410)
T PLN02618 211 HPY--PMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATL 287 (410)
T ss_pred CCC--HHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccch
Confidence 333 2233478999999997776 34699999999999999999999975 79999999999987 223
Q ss_pred cCCCC--------------------CCcccCcccCCCC-cc--ccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-----
Q 023565 216 NGGQR--------------------GKHLIQGIGAGII-PS--VLDIDILDEVITVSHKIDLHLLHFCCCSSPTL----- 267 (280)
Q Consensus 216 ~~g~~--------------------~~~~~~glg~~~~-~~--~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~----- 267 (280)
..|++ ..++..||..+.+ |. .+.+..+|+.+.|+|+|+++++++|++.||++
T Consensus 288 ~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sS 367 (410)
T PLN02618 288 TKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALET 367 (410)
T ss_pred hcCCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhH
Confidence 33322 1234455554322 22 23345789999999999999999999999998
Q ss_pred --hhhhHHhh
Q 023565 268 --SFQKKITY 275 (280)
Q Consensus 268 --~~~~~~~~ 275 (280)
.+++++++
T Consensus 368 a~a~a~a~~~ 377 (410)
T PLN02618 368 SHALAYLEKL 377 (410)
T ss_pred HHHHHHHHHH
Confidence 45555544
No 68
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=3e-45 Score=341.88 Aligned_cols=258 Identities=20% Similarity=0.217 Sum_probs=204.0
Q ss_pred hcccCCCcceeccccccCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEE-eCCChHHHHHHHHH
Q 023565 12 TELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIE-VTSGNTGVGLAFIA 88 (280)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~-~SsGN~g~alA~~a 88 (280)
....++|||+++++|++.+| .+||+|+|++||+||||+|++..++..+.++|. .++++ .|+||||+|+|++|
T Consensus 72 ~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~aa 146 (427)
T PRK12391 72 YRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALAC 146 (427)
T ss_pred HcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHHH
Confidence 45678999999999998776 699999999999999999999999999999885 24665 57899999999999
Q ss_pred HHcCCcEEEEeCCC---CCHHHHHHHHHCCCEEEEECCCCC----------------HHHHHHHHHHHHHhCCCeEEcCC
Q 023565 89 AARGYNLIIVMPST---CSMERRIVLRALGAEIILADSALR----------------FEEILEKGEEILKKTPDGYLLRQ 149 (280)
Q Consensus 89 ~~~G~~~~ivvp~~---~~~~~~~~l~~~Ga~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~ 149 (280)
+.+|++|+||||+. .++.|+.+|+.|||+|+.++...+ ...++.++.+.+++.++.+|..+
T Consensus 147 a~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~ 226 (427)
T PRK12391 147 ALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALG 226 (427)
T ss_pred HHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcC
Confidence 99999999999974 366899999999999999985311 11256777777766556556645
Q ss_pred CCCCccHHHHHHhHHHHHHHhhC---CCCCEEEEecCCchhHHHHHHHHH---hcC-CCcEEEEEeCCCCccccCCCC--
Q 023565 150 FENPANPKIHYETTGPEIWQDSG---GKVDAFISGIGTGGTVTGAGRFLK---ENN-PDIKVYGVEPSESAVLNGGQR-- 220 (280)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~q~~---~~~d~vv~~vG~Gg~~~Gi~~~~k---~~~-p~~~vigVe~~~~~~~~~g~~-- 220 (280)
+.. .+...||.++++||++|++ ..||+||+|+|+||+++|++.++. ..+ +++|||+|||++|+++..+..
T Consensus 227 s~~-~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~ 305 (427)
T PRK12391 227 SVL-NHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAY 305 (427)
T ss_pred CCC-cHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccc
Confidence 433 3344799999999999995 369999999999999999999773 234 889999999999988765421
Q ss_pred ------C--C-cccCcccCCCCcccc-----------------ccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------
Q 023565 221 ------G--K-HLIQGIGAGIIPSVL-----------------DIDILDEVITVSHKIDLHLLHFCCCSSPTL------- 267 (280)
Q Consensus 221 ------~--~-~~~~glg~~~~~~~~-----------------~~~~vd~~~~V~d~ea~~~~~~la~~eG~~------- 267 (280)
. + ..+.++|.+++|..+ .+..+++.+.|+|+|+++++++|++.||++
T Consensus 306 ~~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~ 385 (427)
T PRK12391 306 DFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSH 385 (427)
T ss_pred cccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHH
Confidence 1 1 234566665544322 133445889999999999999999999988
Q ss_pred hhhhHHhh
Q 023565 268 SFQKKITY 275 (280)
Q Consensus 268 ~~~~~~~~ 275 (280)
.++++++.
T Consensus 386 alaaa~~~ 393 (427)
T PRK12391 386 AIAAAIDE 393 (427)
T ss_pred HHHHHHHH
Confidence 66776653
No 69
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=3.1e-46 Score=338.07 Aligned_cols=255 Identities=20% Similarity=0.168 Sum_probs=202.8
Q ss_pred ccCCCcceeccccccCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHH
Q 023565 14 LIGNTPMVYLNNVVDGCVARIAAKLETMEPC--SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TSGNTGVGLAFIAA 89 (280)
Q Consensus 14 ~~~~TPl~~~~~l~~~~g~~l~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--SsGN~g~alA~~a~ 89 (280)
.-.+|||+++++++...|.+||+|+|++||+ ||||+|++.+++.+++++|. ++||++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHH
Confidence 3478999999999888889999999999997 99999999999999999885 459998 55999999999999
Q ss_pred HcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHh---C-C-CeEEcCCCCCCccHHHHHHhH
Q 023565 90 ARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSALRFEEILEKGEEILKK---T-P-DGYLLRQFENPANPKIHYETT 163 (280)
Q Consensus 90 ~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~---~-~-~~~~~~~~~~~~~~~~g~~t~ 163 (280)
.+|+++++|||+.. +..+..+++.|||+|+.++.. ++.+..+.+++++++ . + ..++++++.||.+. .|+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGT-LGYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHH-HHHHHH
Confidence 99999999999865 456777789999999999852 344444444444332 2 1 23455777888887 577789
Q ss_pred HHHHHHhhCC--CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCC---CCCcccCcccCC-CCcccc
Q 023565 164 GPEIWQDSGG--KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQ---RGKHLIQGIGAG-IIPSVL 237 (280)
Q Consensus 164 ~~Ei~~q~~~--~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~---~~~~~~~glg~~-~~~~~~ 237 (280)
++||++|++. +||+||+|+|||||++|++.++|+++|+++||||+|+.+.+..... ..++.+++++.+ ...+.+
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 236 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPE 236 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 9999999953 7999999999999999999999999999999999987653211111 123455666654 234445
Q ss_pred ccccCCeEEEeCHHHHHHHHHHhhhcCCcc--------hhhhHHhh
Q 023565 238 DIDILDEVITVSHKIDLHLLHFCCCSSPTL--------SFQKKITY 275 (280)
Q Consensus 238 ~~~~vd~~~~V~d~ea~~~~~~la~~eG~~--------~~~~~~~~ 275 (280)
.+++.++.+.|+|+|++++++.|++.+|++ ++++++++
T Consensus 237 ~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~ 282 (311)
T TIGR01275 237 LDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDL 282 (311)
T ss_pred ECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHH
Confidence 567888999999999999999999976665 55666655
No 70
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=3.2e-46 Score=341.36 Aligned_cols=267 Identities=18% Similarity=0.164 Sum_probs=212.9
Q ss_pred chhHHhhhcccCCCcceeccccccCCC--ceEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CC
Q 023565 5 NAIKRDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPC---SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TS 77 (280)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g--~~l~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--Ss 77 (280)
++-++++...+++|||++++++++..| .+||+|+|++||+ ||||+|.+.+++.++.++|. .+|+++ |+
T Consensus 3 ~~~~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~ 77 (337)
T PRK12390 3 LQKFPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQ 77 (337)
T ss_pred CCCCCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCc
Confidence 455678999999999999999888777 7999999999987 88899999999999999886 458887 77
Q ss_pred ChHHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHHHhCCCeEE-
Q 023565 78 GNTGVGLAFIAAARGYNLIIVMPSTCS--------MERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKTPDGYL- 146 (280)
Q Consensus 78 GN~g~alA~~a~~~G~~~~ivvp~~~~--------~~~~~~l~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~- 146 (280)
||||+|+|++|+.+|++|++|+|..+| ..|+.+++.|||+|+.++... .+.++.+.+.+.+++.++..|
T Consensus 78 GN~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (337)
T PRK12390 78 SNHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYA 157 (337)
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEE
Confidence 999999999999999999999877554 237779999999999998531 234667777777766444445
Q ss_pred cCCCCCCc-cHHHHHHhHHHHHHHh---hCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCC--
Q 023565 147 LRQFENPA-NPKIHYETTGPEIWQD---SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQR-- 220 (280)
Q Consensus 147 ~~~~~~~~-~~~~g~~t~~~Ei~~q---~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~-- 220 (280)
++++.++. ....||.++++||++| ++++||+||+|+|+|||++|++.++|+..|++|||+|||++++.+...+.
T Consensus 158 ~~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~ 237 (337)
T PRK12390 158 IPAGASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLR 237 (337)
T ss_pred eCCcCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHH
Confidence 44443321 1225899999999998 44479999999999999999999999999999999999999876543211
Q ss_pred -CCcccCcccCCC--Cc--cccccccCCeEEEeCHHHHHHHHHHhhhcCCcc--------hhhhHHhhh
Q 023565 221 -GKHLIQGIGAGI--IP--SVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL--------SFQKKITYN 276 (280)
Q Consensus 221 -~~~~~~glg~~~--~~--~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~--------~~~~~~~~~ 276 (280)
.++.+++++.+. .+ +.+..+++|+.+.|+|+|++++++++++.+|++ +|+++.++.
T Consensus 238 ~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~ 306 (337)
T PRK12390 238 IARNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDLV 306 (337)
T ss_pred HHHHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHH
Confidence 234445555543 22 245678999999999999999999999988887 566666553
No 71
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=2.1e-46 Score=341.82 Aligned_cols=265 Identities=22% Similarity=0.178 Sum_probs=212.5
Q ss_pred chhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEEEeC--CChH
Q 023565 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPC--SSVKDRIAYSMIKDAEDKGLITPGKTTLIEVT--SGNT 80 (280)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~S--sGN~ 80 (280)
++.++++...+++|||++++.+++..|.+||+|+|++||+ ||||+|++.+++.++.++|. ++||++| +|||
T Consensus 3 ~~~~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~ 77 (331)
T PRK03910 3 LARFPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNH 77 (331)
T ss_pred cCcCCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHH
Confidence 4556788999999999999999887889999999999996 59999999999999998874 4588875 3899
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCH--------HHHHHHHHCCCEEEEECCCCCHHH-HHHHHHHHHHhCCCeE-EcCCC
Q 023565 81 GVGLAFIAAARGYNLIIVMPSTCSM--------ERRIVLRALGAEIILADSALRFEE-ILEKGEEILKKTPDGY-LLRQF 150 (280)
Q Consensus 81 g~alA~~a~~~G~~~~ivvp~~~~~--------~~~~~l~~~Ga~v~~~~~~~~~~~-~~~~a~~~~~~~~~~~-~~~~~ 150 (280)
|+|+|++|+.+|++|+||||+..++ .++..++.+||+|+.++...+..+ +.+.++++.++.+..+ +..++
T Consensus 78 g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~ 157 (331)
T PRK03910 78 ARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGG 157 (331)
T ss_pred HHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCC
Confidence 9999999999999999999998875 456899999999999986433323 3445566665543233 34567
Q ss_pred CCCccHHHHHHhHHHHHHHhhCC---CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCC---CCcc
Q 023565 151 ENPANPKIHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQR---GKHL 224 (280)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~~q~~~---~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~---~~~~ 224 (280)
.|+.+. .||.++++||++|++. +||+||+|+||||+++|++.++|+++|+++||||||++++.+....+ ..+.
T Consensus 158 ~~~~~~-~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~ 236 (331)
T PRK03910 158 SNALGA-LGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQAT 236 (331)
T ss_pred CCchhH-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHH
Confidence 788887 5889999999999953 69999999999999999999999999999999999998865432111 1233
Q ss_pred cCcccCC--CC--ccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc--------hhhhHHhh
Q 023565 225 IQGIGAG--II--PSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL--------SFQKKITY 275 (280)
Q Consensus 225 ~~glg~~--~~--~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~--------~~~~~~~~ 275 (280)
.++++.+ .. .+.+.++++|+++.|+|+|+++++++|++.+|++ .++++.++
T Consensus 237 a~~~g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~ 299 (331)
T PRK03910 237 AELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDL 299 (331)
T ss_pred HHHcCCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHH
Confidence 4445443 12 2346678999999999999999999998876665 56666665
No 72
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=3.8e-46 Score=336.07 Aligned_cols=253 Identities=34% Similarity=0.487 Sum_probs=204.8
Q ss_pred hhcccCCCcceecc--ccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHH
Q 023565 11 VTELIGNTPMVYLN--NVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIA 88 (280)
Q Consensus 11 i~~~~~~TPl~~~~--~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a 88 (280)
|+.++++|||++++ .++...+.+||+|+|++|||||||+|++.+++.++.++|. ++|+++|+||||+|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhh
Confidence 57899999999975 4455677999999999999999999999999999988863 5699999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHh-------CCCeEEcCCCCCCccHHHHHH
Q 023565 89 AARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKK-------TPDGYLLRQFENPANPKIHYE 161 (280)
Q Consensus 89 ~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~~~~g~~ 161 (280)
+.+|++|++|+|+++++.|+++++.+||+|+.++. +++++.+.+.+++++ .++. ++|+ ++.+...||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPG--DVEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESS--THHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEccc--cccccccccccccccccccccccccc--cCcc-cchhhhhhhh
Confidence 99999999999999999999999999999999985 344444444444332 2122 6677 4444458999
Q ss_pred hHHHHHHHhhCCCCCE--EEEecCCchhHHHHHHHHHh--cCCCcEEEEEeCCCCcccc----CCCC----CCcccCccc
Q 023565 162 TTGPEIWQDSGGKVDA--FISGIGTGGTVTGAGRFLKE--NNPDIKVYGVEPSESAVLN----GGQR----GKHLIQGIG 229 (280)
Q Consensus 162 t~~~Ei~~q~~~~~d~--vv~~vG~Gg~~~Gi~~~~k~--~~p~~~vigVe~~~~~~~~----~g~~----~~~~~~glg 229 (280)
++++||++|++ .||. ||+|+|+||+++|++.+++. . |+++||+|++.+++.+. .+.+ ..+.+.|++
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~ 228 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLG 228 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGT
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeeccc
Confidence 99999999996 6665 99999999999999999999 7 99999999999987653 3333 224556888
Q ss_pred CCC-Cc----cccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 230 AGI-IP----SVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 230 ~~~-~~----~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
.+. .+ +.+.++++++++.|+|+|+++++++|++.+|++ .+++++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~ 286 (306)
T PF00291_consen 229 VPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALKL 286 (306)
T ss_dssp SSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHH
T ss_pred CCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHH
Confidence 765 22 335677888999999999999999999998876 55555554
No 73
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=2.3e-45 Score=340.70 Aligned_cols=255 Identities=14% Similarity=0.063 Sum_probs=207.0
Q ss_pred hcccCCCcceeccccccCCCc-eEEE-------EeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 023565 12 TELIGNTPMVYLNNVVDGCVA-RIAA-------KLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (280)
Q Consensus 12 ~~~~~~TPl~~~~~l~~~~g~-~l~~-------K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~a 83 (280)
....+.|||+++++|++.+|. +||+ |+|++|||||||||++.+++..+.+.|. ++||++|+||||+|
T Consensus 57 ~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~a 131 (398)
T TIGR03844 57 LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG-----KTLVVASAGNTGRA 131 (398)
T ss_pred CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHH
Confidence 346678999999999998887 9999 5555999999999999999999998873 55999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhH
Q 023565 84 LAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETT 163 (280)
Q Consensus 84 lA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 163 (280)
+|++|+++|++|+||||++++..+...++.+||+|+.++ ++++++.+.+++++++. +++..++++||..+ +|++|+
T Consensus 132 lA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~--g~~d~a~~~a~~~a~~~-g~~~~~~~~~p~~i-eG~~Ti 207 (398)
T TIGR03844 132 FAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVD--GDYTDAIALADRIATLP-GFVPEGGARNVARR-DGMGTV 207 (398)
T ss_pred HHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECC--CCHHHHHHHHHHHHHhC-CccccCCCCCHHHH-hhHHHH
Confidence 999999999999999999865444444578999999998 46899999999998875 55444566788877 799999
Q ss_pred HHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcC-------CCcEEEEEeCCCCcccc----CCCCC-----------
Q 023565 164 GPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENN-------PDIKVYGVEPSESAVLN----GGQRG----------- 221 (280)
Q Consensus 164 ~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~-------p~~~vigVe~~~~~~~~----~g~~~----------- 221 (280)
++||++|++..||+||+|+|+|....|++.+++++. .-+++++||+++++++. .|.+.
T Consensus 208 ~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~ 287 (398)
T TIGR03844 208 MLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAE 287 (398)
T ss_pred HHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCcccc
Confidence 999999996449999999999988999999888742 22588999999998653 33321
Q ss_pred ----CcccCcccCCCCcc-------ccccccCCeEEEeCHHHHHHHHHHhhhcCCc-------chhhhHHhh
Q 023565 222 ----KHLIQGIGAGIIPS-------VLDIDILDEVITVSHKIDLHLLHFCCCSSPT-------LSFQKKITY 275 (280)
Q Consensus 222 ----~~~~~glg~~~~~~-------~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~-------~~~~~~~~~ 275 (280)
.++++++..+..+. ...++..++++.|+|+|+.+++++|++.+|+ +++||+.+.
T Consensus 288 ~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~ 359 (398)
T TIGR03844 288 NSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILPAAAVAVAALVKA 359 (398)
T ss_pred ccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccccHHHHHHHHHHH
Confidence 34566765443332 2346789999999999999999999876665 488888875
No 74
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.2e-44 Score=351.84 Aligned_cols=260 Identities=17% Similarity=0.226 Sum_probs=203.3
Q ss_pred hhcccC-CCcceeccccccC----CC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHH
Q 023565 11 VTELIG-NTPMVYLNNVVDG----CV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVG 83 (280)
Q Consensus 11 i~~~~~-~TPl~~~~~l~~~----~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~a 83 (280)
+..++| +|||+++++|++. +| .+||+|+|++|||||||+|++.+++..+.+.|+ .+.|+++|+||||+|
T Consensus 319 ~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG~A 394 (695)
T PRK13802 319 NQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHGVA 394 (695)
T ss_pred HHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHHHH
Confidence 456788 9999999998753 44 799999999999999999999999999999986 345889999999999
Q ss_pred HHHHHHHcCCcEEEEeCCC---CCHHHHHHHHHCCCEEEEECCC-CCHHHHHHHH-HHHHHhCC-CeEEcCCCCCC----
Q 023565 84 LAFIAAARGYNLIIVMPST---CSMERRIVLRALGAEIILADSA-LRFEEILEKG-EEILKKTP-DGYLLRQFENP---- 153 (280)
Q Consensus 84 lA~~a~~~G~~~~ivvp~~---~~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~---- 153 (280)
+|++|+++|++|+||||+. .+..|+.+|+.|||+|+.++.. .+++++.+++ ++++++.+ ..|++.++.||
T Consensus 395 lA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p 474 (695)
T PRK13802 395 TATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFP 474 (695)
T ss_pred HHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcH
Confidence 9999999999999999985 3678999999999999999843 3677776555 55665433 34667777654
Q ss_pred ccHHHHHHhHHHHHHHhhCC-----CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccC----------C
Q 023565 154 ANPKIHYETTGPEIWQDSGG-----KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNG----------G 218 (280)
Q Consensus 154 ~~~~~g~~t~~~Ei~~q~~~-----~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~----------g 218 (280)
.++.+||+++|.||++|+.. .||+||+|+|+||+++|++.+|++ .|++|||||||.++....+ |
T Consensus 475 ~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g 553 (695)
T PRK13802 475 AMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTG 553 (695)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhccC
Confidence 34558999999999999942 699999999999999999999976 6899999999998742211 1
Q ss_pred CC--------------------CCcccCcccCCCC-ccccccccCCeE--EEeCHHHHHHHHHHhhhcCCcc-------h
Q 023565 219 QR--------------------GKHLIQGIGAGII-PSVLDIDILDEV--ITVSHKIDLHLLHFCCCSSPTL-------S 268 (280)
Q Consensus 219 ~~--------------------~~~~~~glg~~~~-~~~~~~~~vd~~--~~V~d~ea~~~~~~la~~eG~~-------~ 268 (280)
.+ ..+++.||...-+ |..-....++.+ +.|+|+|++++++.|++.|||+ .
T Consensus 554 ~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hA 633 (695)
T PRK13802 554 ELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHA 633 (695)
T ss_pred CccccccceeecccCCCCCccCccccccccCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHH
Confidence 10 0112233332111 111112335555 8999999999999999999998 5
Q ss_pred hhhHHhh
Q 023565 269 FQKKITY 275 (280)
Q Consensus 269 ~~~~~~~ 275 (280)
+++++++
T Consensus 634 va~a~~~ 640 (695)
T PRK13802 634 VAGAYKA 640 (695)
T ss_pred HHHHHHH
Confidence 6776665
No 75
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=1.3e-45 Score=333.47 Aligned_cols=252 Identities=22% Similarity=0.237 Sum_probs=199.6
Q ss_pred CcceeccccccCC--CceEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChHHHHHHHHHHH
Q 023565 18 TPMVYLNNVVDGC--VARIAAKLETMEPC---SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TSGNTGVGLAFIAAA 90 (280)
Q Consensus 18 TPl~~~~~l~~~~--g~~l~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--SsGN~g~alA~~a~~ 90 (280)
|||++++++++.+ +.+||+|+|++||+ ||||+|++.+++.++.++|. ++||++ |+||||+|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998877 57999999999998 56799999999999998885 458998 579999999999999
Q ss_pred cCCcEEEEeCCCCC--------HHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHHHhC-CCeEE-cCCC-CCCccHH
Q 023565 91 RGYNLIIVMPSTCS--------MERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKT-PDGYL-LRQF-ENPANPK 157 (280)
Q Consensus 91 ~G~~~~ivvp~~~~--------~~~~~~l~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~-~~~~~-~~~~-~~~~~~~ 157 (280)
+|++|+||||++.+ ..|+.+++.+||+|+.++... ...++.+.+.+..++. +..++ .+++ +||.++
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGG- 154 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccH-
Confidence 99999999999877 468999999999999998642 1123333333333333 22344 4454 489888
Q ss_pred HHHHhHHHHHHHhhCC---CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCC---CcccCccc--
Q 023565 158 IHYETTGPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRG---KHLIQGIG-- 229 (280)
Q Consensus 158 ~g~~t~~~Ei~~q~~~---~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~---~~~~~glg-- 229 (280)
.||.++++||++|++. .||+||+|+|+||+++|++.++|+.+|++|||+|||.+++.+...... ...+.+++
T Consensus 155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~ 234 (307)
T cd06449 155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLE 234 (307)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCC
Confidence 6999999999999954 699999999999999999999999999999999999998755321110 01222223
Q ss_pred CCCCccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc--------hhhhHHhh
Q 023565 230 AGIIPSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL--------SFQKKITY 275 (280)
Q Consensus 230 ~~~~~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~--------~~~~~~~~ 275 (280)
.+..++.+..+++|+.+.|+|+|++++++++++.+|++ .++++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~ 288 (307)
T cd06449 235 VKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDL 288 (307)
T ss_pred CCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHH
Confidence 23345667788999999999999999999999987776 45555554
No 76
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=1.7e-45 Score=336.53 Aligned_cols=265 Identities=20% Similarity=0.206 Sum_probs=213.2
Q ss_pred chhHHhhhcccCCCcceeccccccCCCc--eEEEEeCCCCCC---CchhhHHHHHHHHHHHHcCCCCCCCeEEEEe--CC
Q 023565 5 NAIKRDVTELIGNTPMVYLNNVVDGCVA--RIAAKLETMEPC---SSVKDRIAYSMIKDAEDKGLITPGKTTLIEV--TS 77 (280)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~--~l~~K~E~~~pt---GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~--Ss 77 (280)
++-++|+...+++|||++++++++.+|. +||+|+|++||+ ||||+|++.+++.+++++|. ++|+++ |+
T Consensus 2 ~~~~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~ 76 (337)
T TIGR01274 2 LSRFPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQ 76 (337)
T ss_pred CCcCCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCc
Confidence 3456889999999999999999988764 999999999976 78899999999999999985 458877 66
Q ss_pred ChHHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHCCCEEEEECCCC--CHHHHHHHHHHHHHhCC-CeEE
Q 023565 78 GNTGVGLAFIAAARGYNLIIVMPSTCS--------MERRIVLRALGAEIILADSAL--RFEEILEKGEEILKKTP-DGYL 146 (280)
Q Consensus 78 GN~g~alA~~a~~~G~~~~ivvp~~~~--------~~~~~~l~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~-~~~~ 146 (280)
||||+|+|++|+.+|++|+||||+..+ +.|+.+++.|||+|+.++... ...++..++.+.+++.+ ..++
T Consensus 77 gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 156 (337)
T TIGR01274 77 SNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYP 156 (337)
T ss_pred chHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEE
Confidence 999999999999999999999998542 589999999999999998531 12356666666666552 3356
Q ss_pred cCCCC--CCccHHHHHHhHHHHHHHhh---CCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCC--
Q 023565 147 LRQFE--NPANPKIHYETTGPEIWQDS---GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQ-- 219 (280)
Q Consensus 147 ~~~~~--~~~~~~~g~~t~~~Ei~~q~---~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~-- 219 (280)
+..+. ++... .|+.++++||++|+ +.+||+||+|+|+|||++|++.++|+..|++|||+|||.+++.+....
T Consensus 157 i~~~~~~~~~~~-~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~ 235 (337)
T TIGR01274 157 IPAGCSDHPLGG-LGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQIL 235 (337)
T ss_pred eCCCCCCCccch-hHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHH
Confidence 55553 34444 58999999999995 347999999999999999999999999999999999999997653221
Q ss_pred -CCCcccCcccCCC--Cc--cccccccCCeEEEeCHHHHHHHHHHhhhcCCcc--------hhhhHHhh
Q 023565 220 -RGKHLIQGIGAGI--IP--SVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL--------SFQKKITY 275 (280)
Q Consensus 220 -~~~~~~~glg~~~--~~--~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~--------~~~~~~~~ 275 (280)
...+.+++++.+. .+ +.+..+++|+.|.|+|+|++++++.|++.||++ ++++++++
T Consensus 236 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~ 304 (337)
T TIGR01274 236 RIARNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEM 304 (337)
T ss_pred HHHHHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHH
Confidence 1234555665532 11 456778899999999999999999999999988 45666655
No 77
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=2.2e-44 Score=328.09 Aligned_cols=263 Identities=17% Similarity=0.176 Sum_probs=203.0
Q ss_pred chhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCCC--CchhhHHHHHHHHHHHHcCCCCCCCeEEE--EeCCChH
Q 023565 5 NAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPC--SSVKDRIAYSMIKDAEDKGLITPGKTTLI--EVTSGNT 80 (280)
Q Consensus 5 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~pt--GS~K~R~a~~~l~~a~~~g~~~~g~~~vv--~~SsGN~ 80 (280)
++.+++++...++|||++++++++..|++||+|+|++||+ ||||+|++.+++.++.++|. .+|| ++|+|||
T Consensus 9 ~~~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~ 83 (329)
T PRK14045 9 LSKFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA-----DVVITVGAVHSNH 83 (329)
T ss_pred hhcCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC-----CEEEEeCccHHHH
Confidence 5567899999999999999999887889999999999986 89999999999999998885 3476 5889999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHHCCCEEEEECCCCC---HHHHHHHHHHHHHhCCCeEE-cCCCCCCcc
Q 023565 81 GVGLAFIAAARGYNLIIVMPSTCSME-RRIVLRALGAEIILADSALR---FEEILEKGEEILKKTPDGYL-LRQFENPAN 155 (280)
Q Consensus 81 g~alA~~a~~~G~~~~ivvp~~~~~~-~~~~l~~~Ga~v~~~~~~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 155 (280)
|+|+|++|+.+|+++++|||...+.. +...++.+||+++.++...+ .+.+.+.+++++++.+..++ ..++.||.+
T Consensus 84 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~ 163 (329)
T PRK14045 84 AFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG 163 (329)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH
Confidence 99999999999999999999876544 66778999999998874222 23455666666655534454 455678888
Q ss_pred HHHHHHhHHHHHHHhhC---CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCC-----CCcccCc
Q 023565 156 PKIHYETTGPEIWQDSG---GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQR-----GKHLIQG 227 (280)
Q Consensus 156 ~~~g~~t~~~Ei~~q~~---~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~-----~~~~~~g 227 (280)
.. ||.+...||++|++ .++|+||+|+|||||++|++.++|..+|++|||+|+|.+......+.. ..+.+.+
T Consensus 164 ~~-g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g 242 (329)
T PRK14045 164 TL-GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLG 242 (329)
T ss_pred HH-HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhC
Confidence 74 66555569999995 379999999999999999999999999999999999976332111110 1122344
Q ss_pred ccCCC-CccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc--------hhhhHHhh
Q 023565 228 IGAGI-IPSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL--------SFQKKITY 275 (280)
Q Consensus 228 lg~~~-~~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~--------~~~~~~~~ 275 (280)
++.+. .+..+ +.+.|++..++ +|++++++.+++.||++ ++++++++
T Consensus 243 ~~~~~~~~~~~-d~~~~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~ 297 (329)
T PRK14045 243 VKVKVQEPELY-DYSFGEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDL 297 (329)
T ss_pred CCCCccceEec-ccccCCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHH
Confidence 44433 33333 33448877777 79999999999999998 45665554
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.3e-43 Score=343.02 Aligned_cols=260 Identities=20% Similarity=0.192 Sum_probs=202.2
Q ss_pred hhcccC-CCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 023565 11 VTELIG-NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (280)
Q Consensus 11 i~~~~~-~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~ 89 (280)
+..+++ +|||+++++|++.+|.+||+|+|++|||||||+|.+...+..+.+.|+ .+.++++|+||||+|+|++|+
T Consensus 264 ~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa 339 (610)
T PRK13803 264 LQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACA 339 (610)
T ss_pred HHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHH
Confidence 445665 899999999998888999999999999999999999999998888774 343557899999999999999
Q ss_pred HcCCcEEEEeCCCC---CHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHH-HHHhCCCeEEcCCCC---C--CccHHHH
Q 023565 90 ARGYNLIIVMPSTC---SMERRIVLRALGAEIILADSA-LRFEEILEKGEE-ILKKTPDGYLLRQFE---N--PANPKIH 159 (280)
Q Consensus 90 ~~G~~~~ivvp~~~---~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~a~~-~~~~~~~~~~~~~~~---~--~~~~~~g 159 (280)
++|++|+||||+.. +..++.+|+.+||+|+.++.. .++.++.+++.+ ...+.++.+|+.+.. + |.++..|
T Consensus 340 ~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~ 419 (610)
T PRK13803 340 LFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYF 419 (610)
T ss_pred HcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHH
Confidence 99999999999864 356889999999999999852 356666555444 434444666764432 2 3444468
Q ss_pred HHhHHHHHHHhhC----CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCCC-------
Q 023565 160 YETTGPEIWQDSG----GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA--------VLNGGQR------- 220 (280)
Q Consensus 160 ~~t~~~Ei~~q~~----~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~--------~~~~g~~------- 220 (280)
|+|++.||++|+. ..||+||+|+|+||+++|++.+|+. .|+++||||||.++. ++..|.+
T Consensus 420 ~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~ 498 (610)
T PRK13803 420 QSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSM 498 (610)
T ss_pred hhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccce
Confidence 9999999999984 2699999999999999999999965 789999999999862 2333322
Q ss_pred -------------CCcccCcccCCCC-cc--ccccccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhh
Q 023565 221 -------------GKHLIQGIGAGII-PS--VLDIDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITY 275 (280)
Q Consensus 221 -------------~~~~~~glg~~~~-~~--~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~ 275 (280)
..+++.|+..+.+ |. .+.+...++++.|+|+|++++++.|++.||++ .+|+++++
T Consensus 499 ~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~ 576 (610)
T PRK13803 499 TYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEG 576 (610)
T ss_pred eeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHh
Confidence 1234555554322 22 22344556899999999999999999999987 56666665
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-37 Score=282.07 Aligned_cols=257 Identities=21% Similarity=0.199 Sum_probs=216.3
Q ss_pred hhhcccCCCcceeccccccCCCc---eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023565 10 DVTELIGNTPMVYLNNVVDGCVA---RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (280)
Q Consensus 10 ~i~~~~~~TPl~~~~~l~~~~g~---~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~ 86 (280)
..+...+.||+++.+++...++. ++|+|.|+.|||||||||++..++..+.+.|. .+|+++||||+|.|+|+
T Consensus 69 ~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aa 143 (411)
T COG0498 69 AVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAA 143 (411)
T ss_pred hhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHH
Confidence 34667889999999888877663 59999999999999999999999999999873 35999999999999999
Q ss_pred HHHHcCCcEEEEeCCC-CCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 023565 87 IAAARGYNLIIVMPST-CSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGP 165 (280)
Q Consensus 87 ~a~~~G~~~~ivvp~~-~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 165 (280)
++.+.|++|+|++|.+ .+..|+.++..+|++++.++ +++|++.+.+++++++. ++++....-||..+ +|+.|+++
T Consensus 144 ya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~--G~fDda~~~vk~~~~~~-~~~~~~nsiNp~rl-egq~t~~f 219 (411)
T COG0498 144 YAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVD--GNFDDAQELVKEAANRE-GLLSAVNSINPYRL-EGQKTYAF 219 (411)
T ss_pred HhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEc--CcHHHHHHHHHHHHhhC-CceeeccccCHHHh-hhhhhhHh
Confidence 9999999999999998 99999999999999999999 56999999999999866 55777666788877 69999999
Q ss_pred HHHHhhC-CCCCEEEEecCCchhHHHHHHHHHhcCCC------cEEEEEeCCCCccccCCC-----CCCcccCcccCCCC
Q 023565 166 EIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPD------IKVYGVEPSESAVLNGGQ-----RGKHLIQGIGAGII 233 (280)
Q Consensus 166 Ei~~q~~-~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~------~~vigVe~~~~~~~~~g~-----~~~~~~~glg~~~~ 233 (280)
||++|++ ..||+|++|+|+||.+.|++.++++..|. ++..+|+++++.+..... ...++++.|..+.
T Consensus 220 e~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~~- 298 (411)
T COG0498 220 EIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIGN- 298 (411)
T ss_pred HHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhcccccccccccccccccCC-
Confidence 9999997 47999999999999999999999998753 677889998876654221 2345666666553
Q ss_pred ccccc------cccCCeEEEeCHHHHHHHHHHhhhcCCcc-------hhhhHHhhh
Q 023565 234 PSVLD------IDILDEVITVSHKIDLHLLHFCCCSSPTL-------SFQKKITYN 276 (280)
Q Consensus 234 ~~~~~------~~~vd~~~~V~d~ea~~~~~~la~~eG~~-------~~~~~~~~~ 276 (280)
|.++. ++..+.++.|||+|++++++++++.||++ ++++++++.
T Consensus 299 p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~ 354 (411)
T COG0498 299 PSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLR 354 (411)
T ss_pred CCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHH
Confidence 33331 23346699999999999999999988887 677777764
No 80
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-33 Score=244.12 Aligned_cols=265 Identities=19% Similarity=0.182 Sum_probs=217.0
Q ss_pred cchhHHhhhcccCCCcceeccccccCCCceEEEEeCCCCC--CCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCC--Ch
Q 023565 4 NNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEP--CSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTS--GN 79 (280)
Q Consensus 4 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~l~~K~E~~~p--tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~Ss--GN 79 (280)
.+..++|+....++|||.+++++++.+|.+||+||||+.+ .|++|.|+.++++.+|.++|. +++|++.+ +|
T Consensus 2 ~l~rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~-----dTlvT~GgiQSN 76 (323)
T COG2515 2 NLSRFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA-----DTLVTYGGIQSN 76 (323)
T ss_pred CcccCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC-----cEEEEecccchh
Confidence 3567899999999999999999999999999999999975 789999999999999999884 67999999 99
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCC----CHHHHHHHHHCCCEEEEECCCCCH--HHHHHHHHHHHHhCCCeEEcCCCC--
Q 023565 80 TGVGLAFIAAARGYNLIIVMPSTC----SMERRIVLRALGAEIILADSALRF--EEILEKGEEILKKTPDGYLLRQFE-- 151 (280)
Q Consensus 80 ~g~alA~~a~~~G~~~~ivvp~~~----~~~~~~~l~~~Ga~v~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~-- 151 (280)
|.+++|++|+++|++|+.++.... -..++.+.+.+|+++..++...++ +...+..++..++.++..|+.|-.
T Consensus 77 h~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~ 156 (323)
T COG2515 77 HVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGS 156 (323)
T ss_pred HHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCc
Confidence 999999999999999999997654 223677778899999999976555 445555666666666777776654
Q ss_pred CCccHHHHHHhHHHHHHHhhC--CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCC---CCcccC
Q 023565 152 NPANPKIHYETTGPEIWQDSG--GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQR---GKHLIQ 226 (280)
Q Consensus 152 ~~~~~~~g~~t~~~Ei~~q~~--~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~---~~~~~~ 226 (280)
||.-. .||...+.||.+|.. -++|+||+++|||||.||+..++...+|+.+|||+.....+.....+. ..+.++
T Consensus 157 ~~~g~-lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~ 235 (323)
T COG2515 157 SPLGA-LGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAE 235 (323)
T ss_pred Ccccc-ccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHH
Confidence 33332 489999999999986 579999999999999999999999999999999999988764332111 233444
Q ss_pred cccCC-CCccccccccCCeEEEeCHHHHHHHHHHhhhcCCcc--------hhhhHHh
Q 023565 227 GIGAG-IIPSVLDIDILDEVITVSHKIDLHLLHFCCCSSPTL--------SFQKKIT 274 (280)
Q Consensus 227 glg~~-~~~~~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~--------~~~~~~~ 274 (280)
.++.+ ...+.+..+|.-..|..+.+|-+++++++++.||++ +|.|+|.
T Consensus 236 ~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid 292 (323)
T COG2515 236 LLGLGSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLID 292 (323)
T ss_pred HcCCCCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHHHHHHHH
Confidence 45544 334566778888889999999999999999999998 5777764
No 81
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.97 E-value=1.8e-30 Score=226.24 Aligned_cols=252 Identities=19% Similarity=0.256 Sum_probs=191.7
Q ss_pred hhcccC-CCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHH
Q 023565 11 VTELIG-NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89 (280)
Q Consensus 11 i~~~~~-~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~ 89 (280)
+..+.| +|||...++|++.+|.+||+|+|++|.||++|..-+...+.-|++-|+ .+-|.+...|.||.|.|.+|+
T Consensus 49 l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A 124 (396)
T COG0133 49 LKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAA 124 (396)
T ss_pred HHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHH
Confidence 344554 599999999999999999999999999999999999999999999997 454566667999999999999
Q ss_pred HcCCcEEEEeCCC-C--CHHHHHHHHHCCCEEEEECC-CCCHHHHHHHH-HHHHHhCCCeEEcCCC-----CCCccHHHH
Q 023565 90 ARGYNLIIVMPST-C--SMERRIVLRALGAEIILADS-ALRFEEILEKG-EEILKKTPDGYLLRQF-----ENPANPKIH 159 (280)
Q Consensus 90 ~~G~~~~ivvp~~-~--~~~~~~~l~~~Ga~v~~~~~-~~~~~~~~~~a-~~~~~~~~~~~~~~~~-----~~~~~~~~g 159 (280)
++|++|+|+|-.. + ...++.+|+.+||+|+.|.. +.+..++..+| +.....-...+|+... --|.....-
T Consensus 125 ~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdF 204 (396)
T COG0133 125 LFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDF 204 (396)
T ss_pred HhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHH
Confidence 9999999999753 2 34578899999999999964 45677777776 4455555556665332 123333345
Q ss_pred HHhHHHHHHHhh----CCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCc--------cccCCCCC------
Q 023565 160 YETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA--------VLNGGQRG------ 221 (280)
Q Consensus 160 ~~t~~~Ei~~q~----~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~--------~~~~g~~~------ 221 (280)
++.||.|.-+|+ +..||+||.|+|+|+.+.|+...|-. .+++++||||+.+.- ++..|+++
T Consensus 205 Q~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~ 283 (396)
T COG0133 205 QSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMK 283 (396)
T ss_pred HHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeeccc
Confidence 788999987775 45699999999999999999988865 378999999997643 33334331
Q ss_pred --------------CcccCcccCCCC-cc--ccccccCCeEEEeCHHHHHHHHHHhhhcCCcc
Q 023565 222 --------------KHLIQGIGAGII-PS--VLDIDILDEVITVSHKIDLHLLHFCCCSSPTL 267 (280)
Q Consensus 222 --------------~~~~~glg~~~~-~~--~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~ 267 (280)
.++..||..+-+ |. .+...---+.+.|+|+|++++.++|++.|||+
T Consensus 284 tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~EGII 346 (396)
T COG0133 284 TYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRLEGII 346 (396)
T ss_pred ceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcCcc
Confidence 123344443222 22 12233344678899999999999999999998
No 82
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=208.82 Aligned_cols=255 Identities=19% Similarity=0.200 Sum_probs=193.2
Q ss_pred hHHhhhcccCCCcceeccccccCCC--ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCC-ChHHHH
Q 023565 7 IKRDVTELIGNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTS-GNTGVG 83 (280)
Q Consensus 7 ~~~~i~~~~~~TPl~~~~~l~~~~g--~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~Ss-GN~g~a 83 (280)
+.+.....-.+|||++..+|.+-++ .+||.|.|...||||+|...|....-.+..+|. ..++|-++ |.||.|
T Consensus 68 v~e~Y~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~-----~rl~TETGAGQWGsA 142 (432)
T COG1350 68 VREAYLQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA-----KRLTTETGAGQWGSA 142 (432)
T ss_pred HHHHHHHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc-----eeeecccCCchHHHH
Confidence 4445555557999999999988665 799999999999999999999999999998886 34665555 999999
Q ss_pred HHHHHHHcCCcEEEEeCCC---CCHHHHHHHHHCCCEEEEECCC----------------CCHHHHHHHHHHHHHhCCCe
Q 023565 84 LAFIAAARGYNLIIVMPST---CSMERRIVLRALGAEIILADSA----------------LRFEEILEKGEEILKKTPDG 144 (280)
Q Consensus 84 lA~~a~~~G~~~~ivvp~~---~~~~~~~~l~~~Ga~v~~~~~~----------------~~~~~~~~~a~~~~~~~~~~ 144 (280)
++.+|+.+|++|+|||-.. ..+.+..+|+.|||+|+..+.. ++..-++.+|.+.+.++++.
T Consensus 143 lslA~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~ 222 (432)
T COG1350 143 LSLAAALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENT 222 (432)
T ss_pred HHHHHHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCc
Confidence 9999999999999999664 4567888999999999988743 12334577777777766545
Q ss_pred EEcCCCCCCccHHHHHHhHHHHHHHhh---CCCCCEEEEecCCchhHHHHHHHHHh--c-C-CCcEEEEEeCCCCccccC
Q 023565 145 YLLRQFENPANPKIHYETTGPEIWQDS---GGKVDAFISGIGTGGTVTGAGRFLKE--N-N-PDIKVYGVEPSESAVLNG 217 (280)
Q Consensus 145 ~~~~~~~~~~~~~~g~~t~~~Ei~~q~---~~~~d~vv~~vG~Gg~~~Gi~~~~k~--~-~-p~~~vigVe~~~~~~~~~ 217 (280)
.|.....-.... .|+..+|+|.-+|+ +..||++|.+||+|+.++|+..-|-. + . ...++|+|+|..+|.+..
T Consensus 223 kY~lGSVlnhvl-lhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~ 301 (432)
T COG1350 223 KYSLGSVLNHVL-LHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTK 301 (432)
T ss_pred eecchhHHHHHH-HHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCcccc
Confidence 555333222233 59999999996665 56799999999999999999886632 1 2 238999999999998876
Q ss_pred CCCC----Cc-------ccCcccCCCCcc-----------------ccccccCCeEEEeCHHHHHHHHHHhhhcCCcc
Q 023565 218 GQRG----KH-------LIQGIGAGIIPS-----------------VLDIDILDEVITVSHKIDLHLLHFCCCSSPTL 267 (280)
Q Consensus 218 g~~~----~~-------~~~glg~~~~~~-----------------~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~ 267 (280)
|... .+ .+-.||-..+|+ .+.+.-+-+...++++|++++.+.+++.||++
T Consensus 302 GeY~YD~gDtagltPllKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiV 379 (432)
T COG1350 302 GEYRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIV 379 (432)
T ss_pred ceeeccCCchhccchhhhhhccCCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCc
Confidence 5421 00 122233333322 12345566788999999999999999999998
No 83
>PRK09225 threonine synthase; Validated
Probab=99.95 E-value=5.3e-26 Score=213.98 Aligned_cols=242 Identities=15% Similarity=0.113 Sum_probs=181.4
Q ss_pred CCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHH---HHHHHHHcCCCCCCCeEEEEeCCChHHHHH-HHHHHHcC
Q 023565 17 NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYS---MIKDAEDKGLITPGKTTLIEVTSGNTGVGL-AFIAAARG 92 (280)
Q Consensus 17 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~---~l~~a~~~g~~~~g~~~vv~~SsGN~g~al-A~~a~~~G 92 (280)
.+||.+++ .++|+.--+.+||||||||++.. ++.++.+ +. ..+|+++||||+|.|+ +.++.+.|
T Consensus 88 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 47887764 25888666778999999999988 7888876 42 3569999999999998 78899999
Q ss_pred CcEEEEeCCC-CCHHHHHHHHHC-CCEE--EEECCCCCHHHHHHHHHHHHHhC-----CCeEEcCCCCCCccHHHHHHhH
Q 023565 93 YNLIIVMPST-CSMERRIVLRAL-GAEI--ILADSALRFEEILEKGEEILKKT-----PDGYLLRQFENPANPKIHYETT 163 (280)
Q Consensus 93 ~~~~ivvp~~-~~~~~~~~l~~~-Ga~v--~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~ 163 (280)
++++|++|++ +|+.++++|..+ |++| +.++ ++++++...++++..+. -+++-.+. -||..+ .||.+.
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~--G~fDD~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri-~gQ~~y 231 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVE--GNFDDCQALVKAAFNDEELKEKLKLSSANS-INIGRL-LAQIVY 231 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeC--CCHHHHHHHHHHHhhchhhhhcCceEEEec-cCHHHH-HHHHHH
Confidence 9999999996 999999999999 9977 5666 57999988888876541 13444444 367766 699999
Q ss_pred HHHHHHhhCC---CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCc---cccCCCC-----CCcccCcccCCC
Q 023565 164 GPEIWQDSGG---KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA---VLNGGQR-----GKHLIQGIGAGI 232 (280)
Q Consensus 164 ~~Ei~~q~~~---~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~---~~~~g~~-----~~~~~~glg~~~ 232 (280)
++|+.+|+.. .||.|+||+|+||.+.|.+.+.+.-.|-.|+|+++-.+.. .+..|.. ..|.+.+|..+.
T Consensus 232 yfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~n~n~~l~~~~~~G~y~~~~~~~T~s~amdI~~ 311 (462)
T PRK09225 232 YFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVATNENDVLTRFLKTGVYDPRPTVATLSPAMDISV 311 (462)
T ss_pred HHHHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEecCChHHHHHHHcCCCccCCCCCCcCchhhcCC
Confidence 9999999953 3899999999999999999995555576699999833322 1223332 234556655542
Q ss_pred Ccccccc---------------------ccCC---------------eEEEeCHHHHHHHHHHhhhcCCcc-------hh
Q 023565 233 IPSVLDI---------------------DILD---------------EVITVSHKIDLHLLHFCCCSSPTL-------SF 269 (280)
Q Consensus 233 ~~~~~~~---------------------~~vd---------------~~~~V~d~ea~~~~~~la~~eG~~-------~~ 269 (280)
|.++.+ +.-. ..+.|+|+|+.++++.+++.+|.+ ++
T Consensus 312 -psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~ 390 (462)
T PRK09225 312 -SSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTAVAY 390 (462)
T ss_pred -CCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHHHHH
Confidence 322221 0111 568899999999999998876654 77
Q ss_pred hhHHhh
Q 023565 270 QKKITY 275 (280)
Q Consensus 270 ~~~~~~ 275 (280)
+++.++
T Consensus 391 aa~~~~ 396 (462)
T PRK09225 391 KAAREY 396 (462)
T ss_pred HHHHHh
Confidence 777665
No 84
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.94 E-value=3.1e-25 Score=208.92 Aligned_cols=245 Identities=13% Similarity=0.065 Sum_probs=182.7
Q ss_pred CCcceeccccccCCCceEEEEeCCCCCCCchhhHHHHHH---HHHHHHcCCCCCCCeEEEEeCCChHHHH-HHHHHHHcC
Q 023565 17 NTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSM---IKDAEDKGLITPGKTTLIEVTSGNTGVG-LAFIAAARG 92 (280)
Q Consensus 17 ~TPl~~~~~l~~~~g~~l~~K~E~~~ptGS~K~R~a~~~---l~~a~~~g~~~~g~~~vv~~SsGN~g~a-lA~~a~~~G 92 (280)
-+||.++. .++|++-.+.+||||||||++..+ +..+.++. .+..+|+++||||+|.| ++.++...|
T Consensus 87 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~---~~~~~Il~ATSGdTG~Aa~aaf~~~~g 156 (460)
T cd01560 87 IAPLVQLG-------DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRR---NERITILVATSGDTGSAAIEGFRGKPN 156 (460)
T ss_pred ccceEEeC-------CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhc---CCCeEEEEcCCCcHHHHHHHHHhCcCC
Confidence 37777764 268999999999999999999865 66666541 12456999999999999 588899999
Q ss_pred CcEEEEeCCC-CCHHHHHHHHHCCC---EEEEECCCCCHHHHHHHHHHHHHhC-----CCeEEcCCCCCCccHHHHHHhH
Q 023565 93 YNLIIVMPST-CSMERRIVLRALGA---EIILADSALRFEEILEKGEEILKKT-----PDGYLLRQFENPANPKIHYETT 163 (280)
Q Consensus 93 ~~~~ivvp~~-~~~~~~~~l~~~Ga---~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~ 163 (280)
++|+|++|++ +++.++.+|..+|+ +++.++ ++++++...++++..+. -+++-.+. -|+..+ .++.+.
T Consensus 157 i~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~--G~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri-~~Q~~y 232 (460)
T cd01560 157 VDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVE--GDFDDCQSLVKALFADEDFNKKLKLSSANS-INWARI-LAQIVY 232 (460)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEc--CCHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHHH-HHHHHH
Confidence 9999999996 99999999999997 888888 56899988888876542 13333433 366666 699999
Q ss_pred HHHHHHhhCC----CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCc---cccCCCC------CCcccCcccC
Q 023565 164 GPEIWQDSGG----KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA---VLNGGQR------GKHLIQGIGA 230 (280)
Q Consensus 164 ~~Ei~~q~~~----~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~---~~~~g~~------~~~~~~glg~ 230 (280)
++|+.+|+.. .+|.|+||+|+||.+.|.+.+.+--.|-.|+|+++..+.. .+..|.. ..+...+|..
T Consensus 233 yf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~il~~~~~~G~y~~~~~~~~T~spamdI 312 (460)
T cd01560 233 YFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNENDVLRRFFKTGRYDRRESLKQTLSPAMDI 312 (460)
T ss_pred HHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCChHHHHHHHcCCCcCCCCCCCCcCchhhc
Confidence 9999999853 5899999999999999999997765677799997665432 1223322 2345555554
Q ss_pred CCCcccccc---c--cCC-------------------------------eEEEeCHHHHHHHHHHhhhcCCcc-------
Q 023565 231 GIIPSVLDI---D--ILD-------------------------------EVITVSHKIDLHLLHFCCCSSPTL------- 267 (280)
Q Consensus 231 ~~~~~~~~~---~--~vd-------------------------------~~~~V~d~ea~~~~~~la~~eG~~------- 267 (280)
+. |.++.+ . .-| ..+.|+|+|+.++++.+++.+|.+
T Consensus 313 ~~-psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAv 391 (460)
T cd01560 313 LK-SSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHTAV 391 (460)
T ss_pred CC-CCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchHHH
Confidence 32 333211 0 011 468899999999999998765554
Q ss_pred hhhhHHhhh
Q 023565 268 SFQKKITYN 276 (280)
Q Consensus 268 ~~~~~~~~~ 276 (280)
+++++.++.
T Consensus 392 a~aa~~~~~ 400 (460)
T cd01560 392 GVRAAERVR 400 (460)
T ss_pred HHHHHHHHH
Confidence 777777654
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.94 E-value=1.1e-25 Score=198.45 Aligned_cols=253 Identities=19% Similarity=0.217 Sum_probs=176.2
Q ss_pred hhhcc-cCCCcceeccccccCC--CceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH
Q 023565 10 DVTEL-IGNTPMVYLNNVVDGC--VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF 86 (280)
Q Consensus 10 ~i~~~-~~~TPl~~~~~l~~~~--g~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~ 86 (280)
.|..+ -.+|||++.++|.+.+ |.+||+|+|++||+||+|...+...+..+.+.|+ .+.|.+...|.||.|+|.
T Consensus 114 eiy~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~ 189 (477)
T KOG1395|consen 114 EIYKYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATAT 189 (477)
T ss_pred HHHHHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHH
Confidence 34433 3569999999998764 5899999999999999999999999988999987 343556666999999999
Q ss_pred HHHHcCCcEEEEeCCC---CCHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHH-HHhCCCeEEcCCC-CC----CccH
Q 023565 87 IAAARGYNLIIVMPST---CSMERRIVLRALGAEIILADSA-LRFEEILEKGEEI-LKKTPDGYLLRQF-EN----PANP 156 (280)
Q Consensus 87 ~a~~~G~~~~ivvp~~---~~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~a~~~-~~~~~~~~~~~~~-~~----~~~~ 156 (280)
+|+++|++|+|+|-.. ..+.++.+||.+||+|+.+... ...+++-..+-++ .....-.+|+... .. |...
T Consensus 190 a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~v 269 (477)
T KOG1395|consen 190 ACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVV 269 (477)
T ss_pred HHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHH
Confidence 9999999999999754 3566889999999999999742 2333333333222 1111122332221 11 2222
Q ss_pred HHHHHhHHHHHHHhh----CCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcc--------ccCCCCC---
Q 023565 157 KIHYETTGPEIWQDS----GGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAV--------LNGGQRG--- 221 (280)
Q Consensus 157 ~~g~~t~~~Ei~~q~----~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~--------~~~g~~~--- 221 (280)
..=+.+|+-|-..|. +..||.||.|+|+|+..+|+..-|..- ..++.|+|+..+.+. +..|+.+
T Consensus 270 r~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~d-k~v~~igveaagdg~dtp~hsatltagd~Gv~h 348 (477)
T KOG1395|consen 270 RTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRD-KSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFH 348 (477)
T ss_pred HHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhcc-chhheeeeeecccccCCcchhceeecccccccc
Confidence 223577888887664 456999999999999999999888753 357888998876432 1222221
Q ss_pred ----------------C-cccCcccCCCC-cc--ccccccCCeEEEeCHHHHHHHHHHhhhcCCcc
Q 023565 222 ----------------K-HLIQGIGAGII-PS--VLDIDILDEVITVSHKIDLHLLHFCCCSSPTL 267 (280)
Q Consensus 222 ----------------~-~~~~glg~~~~-~~--~~~~~~vd~~~~V~d~ea~~~~~~la~~eG~~ 267 (280)
+ .+..||...-+ |. .+...-.-+++.|+|.|+++..++|++.|||+
T Consensus 349 G~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGII 414 (477)
T KOG1395|consen 349 GVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGII 414 (477)
T ss_pred cceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcccc
Confidence 1 12233432211 21 12222345789999999999999999999998
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.92 E-value=8e-24 Score=183.70 Aligned_cols=252 Identities=18% Similarity=0.235 Sum_probs=209.0
Q ss_pred cccCCCcceecccccc----C----CCceEEEEeCCCCC-CCchhhHHHHHHHH-H----HHHcCCCCCCC---------
Q 023565 13 ELIGNTPMVYLNNVVD----G----CVARIAAKLETMEP-CSSVKDRIAYSMIK-D----AEDKGLITPGK--------- 69 (280)
Q Consensus 13 ~~~~~TPl~~~~~l~~----~----~g~~l~~K~E~~~p-tGS~K~R~a~~~l~-~----a~~~g~~~~g~--------- 69 (280)
.++-.+||++.+.+.+ + ...++|+|+|+.-| +||+|.|+..|-+. + |++.|.++-.+
T Consensus 74 ~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~~ 153 (443)
T COG3048 74 GGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSEE 153 (443)
T ss_pred CCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcHH
Confidence 3566788888766542 2 23589999999999 99999999988664 3 45667654321
Q ss_pred -------eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCC
Q 023565 70 -------TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTP 142 (280)
Q Consensus 70 -------~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 142 (280)
-.|...|+||.|.++...++.+|++++|.|..++.++|..++|..|.+|+... .+|..+.+.-++.++..|
T Consensus 154 f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe--~DY~~AVeeGRk~a~~DP 231 (443)
T COG3048 154 FKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYE--QDYGVAVEEGRKEAESDP 231 (443)
T ss_pred HHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEec--chhhHHHHHhhhhhccCC
Confidence 15788999999999999999999999999999999999999999999999998 578899999999999999
Q ss_pred CeEEcCCCCCCccHHHHHHhHHHHHHHhhC--------CCCCEEEEecCCchhHHHHHHHHHhcC-CCcEEEEEeCCCCc
Q 023565 143 DGYLLRQFENPANPKIHYETTGPEIWQDSG--------GKVDAFISGIGTGGTVTGAGRFLKENN-PDIKVYGVEPSESA 213 (280)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~--------~~~d~vv~~vG~Gg~~~Gi~~~~k~~~-p~~~vigVe~~~~~ 213 (280)
..||++.-++.... .||...+..+-.|+. ..|-.|..|+|.||...|++.++|..+ .++.++-+||..+|
T Consensus 232 ~c~FiDDE~S~~LF-LGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsP 310 (443)
T COG3048 232 NCFFIDDENSRTLF-LGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSP 310 (443)
T ss_pred ceEEecccchhhhh-hhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCCh
Confidence 89999776554444 699999999988873 247789999999999999999999765 67999999999999
Q ss_pred cccCC---------------CCCCcccCcccCCCCcccc---ccccCCeEEEeCHHHHHHHHHHhhhcCCcc
Q 023565 214 VLNGG---------------QRGKHLIQGIGAGIIPSVL---DIDILDEVITVSHKIDLHLLHFCCCSSPTL 267 (280)
Q Consensus 214 ~~~~g---------------~~~~~~~~glg~~~~~~~~---~~~~vd~~~~V~d~ea~~~~~~la~~eG~~ 267 (280)
++.-| ....+.++|+.++..+..+ ..+..|..++|+|+..++..+.|++.||+.
T Consensus 311 cMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~r 382 (443)
T COG3048 311 CMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIR 382 (443)
T ss_pred HHHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcc
Confidence 86422 1245678999988766543 467899999999999999999999999986
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=89.94 E-value=3.1 Score=34.25 Aligned_cols=102 Identities=16% Similarity=0.096 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCCcEE-EEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHH
Q 023565 81 GVGLAFIAAARGYNLI-IVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIH 159 (280)
Q Consensus 81 g~alA~~a~~~G~~~~-ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 159 (280)
|..+.++++.+|.++. -+.+.+.-...+..+...|-+|.+++++ -....+.+..+.++.|+.-.+.-++.+.+. .-
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~-~~ 89 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFDE-EE 89 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCCh-hh
Confidence 4789999999998873 3333333445666677788999999864 223333445555666654433222222222 12
Q ss_pred HHhHHHHHHHhhCCCCCEEEEecCCchhH
Q 023565 160 YETTGPEIWQDSGGKVDAFISGIGTGGTV 188 (280)
Q Consensus 160 ~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~ 188 (280)
...+..+|- + ..||.|+++.|+---=
T Consensus 90 ~~~i~~~I~-~--~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 90 EEAIINRIN-A--SGPDIVFVGLGAPKQE 115 (172)
T ss_pred HHHHHHHHH-H--cCCCEEEEECCCCHHH
Confidence 233333332 2 3689999999986543
No 88
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=86.70 E-value=5.6 Score=36.25 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=41.2
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 66 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
.+|.+ ++..+.|..|...+..|+.+|.+++++.....++.|++.++.+|++.+
T Consensus 171 ~~g~~-vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 171 WNPRR-ALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred CCCCE-EEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 45666 555567999999999999999976665554446788999999999864
No 89
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=85.97 E-value=12 Score=34.10 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=41.7
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 60 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
..+..+.+|.+ ++....|..|.+++..|+.+|.++++ + ..++.++..++.+|++.++.
T Consensus 159 ~~~~~~~~g~~-VlV~G~G~vG~~a~~~a~~~G~~vi~-~--~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 159 AVQAGLKKGDL-VIVIGAGGVGGYMVQTAKAMGAAVVA-I--DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCeEEE-E--cCCHHHHHHHHHhCCceEec
Confidence 33445667766 55556699999999999999996433 3 23557888889999976544
No 90
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=84.83 E-value=8.2 Score=33.94 Aligned_cols=52 Identities=27% Similarity=0.326 Sum_probs=38.7
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 65 ~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
..+|.+ ++....|..|...+..|+.+|.+.++++ ..++.|++.++.+|++.+
T Consensus 118 ~~~g~~-VlV~G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~ 169 (280)
T TIGR03366 118 DLKGRR-VLVVGAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATAL 169 (280)
T ss_pred CCCCCE-EEEECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEe
Confidence 346666 5556779999999999999999855555 345678888888998543
No 91
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=84.61 E-value=6.9 Score=29.80 Aligned_cols=43 Identities=28% Similarity=0.379 Sum_probs=26.7
Q ss_pred HHHHhhCC-CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCC
Q 023565 166 EIWQDSGG-KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE 211 (280)
Q Consensus 166 Ei~~q~~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~ 211 (280)
+|.+..++ .+|.||-++|++.++ -.+++.+.|.-+++.+-..+
T Consensus 49 ~i~~~~~~~~~d~vid~~g~~~~~---~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 49 QIRELTGGRGVDVVIDCVGSGDTL---QEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHTTTSSEEEEEESSSSHHHH---HHHHHHEEEEEEEEEESSTS
T ss_pred ccccccccccceEEEEecCcHHHH---HHHHHHhccCCEEEEEEccC
Confidence 33343433 589999999976654 44556566666666665544
No 92
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=84.31 E-value=25 Score=34.21 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=41.0
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 023565 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (280)
Q Consensus 67 ~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 122 (280)
++.+ |+..+.|..|.+.+..|+.+|-.++ ++ +..++++++.+.+||+.+.++
T Consensus 164 pg~k-VlViGaG~iGL~Ai~~Ak~lGA~V~-a~--D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 164 PPAK-VLVIGAGVAGLAAIGAAGSLGAIVR-AF--DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CCCE-EEEECCcHHHHHHHHHHHHCCCEEE-EE--eCCHHHHHHHHHcCCeEEEec
Confidence 4444 9999999999999999999998533 33 345688999999999966554
No 93
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=84.15 E-value=18 Score=32.20 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=43.2
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 122 (280)
+...+++|++-+|...+|..|.++...|+.+|.+++++. .++++...++.+|++-++..
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi~~ 195 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVFNY 195 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEeC
Confidence 345567777755665579999999999999999855543 34578888888999655443
No 94
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.87 E-value=22 Score=35.49 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=41.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (280)
.+++.++.|..|+.+|..-...|++++++= .++.+.+.++.+|.+++.-|.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID---~d~~~v~~~~~~g~~v~~GDat 452 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLD---HDPDHIETLRKFGMKVFYGDAT 452 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEE---CCHHHHHHHHhcCCeEEEEeCC
Confidence 359999999999999999999999887762 2356777778888887777653
No 95
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=83.50 E-value=16 Score=29.98 Aligned_cols=119 Identities=20% Similarity=0.208 Sum_probs=64.2
Q ss_pred HHHHHHHHHHcCCcEEEEeCC-CCCHHHHHHHHHCCCEEEEECCCCCHHHHHHH-HHHHHHhCCCeEEcCCCCCCccHHH
Q 023565 81 GVGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILEK-GEEILKKTPDGYLLRQFENPANPKI 158 (280)
Q Consensus 81 g~alA~~a~~~G~~~~ivvp~-~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~ 158 (280)
|..+.++++.+|.+..--++. +.-+..++.+...+.+|.+++.+ ++..+. ++.+.++.|+.-.+..++.+....
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~---~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~- 86 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK---PEVLEKAAERLRARYPGLKIVGYHHGYFGPE- 86 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC---HHHHHHHHHHHHHHCCCcEEEEecCCCCChh-
Confidence 478999999999883222222 11234455566678999999864 333344 345556666654332222222221
Q ss_pred HHHhHHHHHHHhhC-CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEe
Q 023565 159 HYETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVE 208 (280)
Q Consensus 159 g~~t~~~Ei~~q~~-~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe 208 (280)
... ++.+++. ..||.|+++.|+---=.=+ ...++..+..-+++|=
T Consensus 87 ~~~----~i~~~I~~~~pdiv~vglG~PkQE~~~-~~~~~~l~~~v~~~vG 132 (171)
T cd06533 87 EEE----EIIERINASGADILFVGLGAPKQELWI-ARHKDRLPVPVAIGVG 132 (171)
T ss_pred hHH----HHHHHHHHcCCCEEEEECCCCHHHHHH-HHHHHHCCCCEEEEec
Confidence 111 2444442 3699999999986543222 2334444444455543
No 96
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=83.43 E-value=6.8 Score=35.42 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=42.2
Q ss_pred EEEEeCC---ChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHCCCEEEEEC
Q 023565 71 TLIEVTS---GNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (280)
Q Consensus 71 ~vv~~Ss---GN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~~ 122 (280)
+|+-.+. +|.++++..+++++|++++++.|+.. ++..+..++..|+++...+
T Consensus 152 ~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 152 KIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred EEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 3666666 59999999999999999999999874 5556677777899987775
No 97
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=83.07 E-value=20 Score=33.46 Aligned_cols=56 Identities=25% Similarity=0.297 Sum_probs=42.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
+...+.+|.+ ++...+|.-|.+++..|+.+|.+.+++... .+.++...+.+|++.+
T Consensus 179 ~~~~~~~g~~-VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~--~~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 179 VTAGVGPGST-VYIAGAGPVGLAAAASAQLLGAAVVIVGDL--NPARLAQARSFGCETV 234 (393)
T ss_pred HhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCceEEEeCC--CHHHHHHHHHcCCeEE
Confidence 3345667777 444777999999999999999987664433 4678888999999753
No 98
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=81.68 E-value=3.8 Score=37.78 Aligned_cols=55 Identities=22% Similarity=0.240 Sum_probs=43.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (280)
..++..+||..|.-+|..+..++-.-.|++|.-+...-...+...|++++++|-+
T Consensus 41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~ 95 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDID 95 (363)
T ss_dssp SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BE
T ss_pred CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEecc
Confidence 3589999999999998888444444889999999999999999999999999843
No 99
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=81.59 E-value=8.2 Score=32.81 Aligned_cols=50 Identities=30% Similarity=0.472 Sum_probs=41.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 122 (280)
+|+..+|+.|..++.+....+.++++++.+. +......++..|++++..+
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc
Confidence 5777889999999999999999999998765 4556777888999998666
No 100
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=81.48 E-value=35 Score=32.96 Aligned_cols=124 Identities=13% Similarity=0.159 Sum_probs=73.6
Q ss_pred HHHHHHHHcCCcEEEEe-----------CCCCCHHHHHHHHHCCCEEEEECCC---CCHH-HHHHHHHHHHHhCCCe-E-
Q 023565 83 GLAFIAAARGYNLIIVM-----------PSTCSMERRIVLRALGAEIILADSA---LRFE-EILEKGEEILKKTPDG-Y- 145 (280)
Q Consensus 83 alA~~a~~~G~~~~ivv-----------p~~~~~~~~~~l~~~Ga~v~~~~~~---~~~~-~~~~~a~~~~~~~~~~-~- 145 (280)
-+..+|+..|+++.+.. |..+....+......|++.+..... +.|. ++.+...+.+++-... .
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~ 340 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAY 340 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccch
Confidence 35667899999988865 3344566777777889998887542 1222 4444443333221111 1
Q ss_pred ---EcCCCC-CC--ccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCC
Q 023565 146 ---LLRQFE-NP--ANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212 (280)
Q Consensus 146 ---~~~~~~-~~--~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~ 212 (280)
|-.+.. .. ..........+.++.+.+ +.+.||+.+-+|.++.-++ ...|.++|+++.|...
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vS----r~rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 341 LTNFNDRKNSDPKPSTITEAIALSAVEAAEKL--DAKAIVVLTESGRTARLLS----KYRPNAPIIAVTPNER 407 (473)
T ss_pred hhhhhhhhcccccCCChHHHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHH----hhCCCCCEEEEcCCHH
Confidence 111110 00 011123344455666666 5789999999999865544 4479999999998554
No 101
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=80.64 E-value=20 Score=32.69 Aligned_cols=57 Identities=28% Similarity=0.487 Sum_probs=43.1
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
...+.+|.+-+|...+|.-|....-.|+.+|...++++. +.+|.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEc
Confidence 456677888788888999999999999999984444332 236666899999976654
No 102
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=80.63 E-value=21 Score=30.11 Aligned_cols=49 Identities=22% Similarity=0.181 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHc--CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEE
Q 023565 49 DRIAYSMIKDAEDK--GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII 97 (280)
Q Consensus 49 ~R~a~~~l~~a~~~--g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~i 97 (280)
-+|..+.+..+.+. +.......+++..+.||.|..+|......|.++++
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv 56 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIV 56 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 36777777776654 22222234588888899999999999889987763
No 103
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=80.61 E-value=35 Score=33.94 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=37.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
+++.++.|..|+.+|..-...|++++++=.+ +.+.+.++.+|.+++.-|.
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d---~~~v~~~~~~g~~v~~GDa 451 (601)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMANKMRITVLERD---ISAVNLMRKYGYKVYYGDA 451 (601)
T ss_pred CEEEecCchHHHHHHHHHHhCCCCEEEEECC---HHHHHHHHhCCCeEEEeeC
Confidence 4899999999999999888888887665432 4566667777777666553
No 104
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=79.99 E-value=23 Score=32.34 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=40.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+.+.+++|++-+|. ++|--|.+++..|+.+|.+.++++.. ++.+++.++.+|++-++
T Consensus 170 ~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~~--~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 170 NTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVDI--DDRKLEWAREFGATHTV 226 (358)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 34556777774554 67889999999999999874554432 45778888889985443
No 105
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=79.80 E-value=17 Score=25.28 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=37.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-----H----HHHHHHHHCCCEEEE
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-----M----ERRIVLRALGAEIIL 120 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-----~----~~~~~l~~~Ga~v~~ 120 (280)
++...+|..|.-+|.+.+.+|.+++++...... + .-.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 788899999999999999999999999865421 2 234556666776655
No 106
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=79.69 E-value=50 Score=30.31 Aligned_cols=50 Identities=26% Similarity=0.349 Sum_probs=40.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-CCCEEEEEC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIILAD 122 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~-~Ga~v~~~~ 122 (280)
+++....|.-|...+..++.+|...+|+++ .++.++++.+. .|++++..+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d--~~~~Rl~~A~~~~g~~~~~~~ 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVD--RSPERLELAKEAGGADVVVNP 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHhCCCeEeecC
Confidence 599999999999999999999988888883 35677877776 677766555
No 107
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=79.32 E-value=3.7 Score=33.07 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=32.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA 113 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~ 113 (280)
|...++||+|.|+|...+..|.+++++.++. ...+.++.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~ 40 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINE 40 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHH
Confidence 7788999999999999999999999998764 55555554
No 108
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=79.29 E-value=9.4 Score=31.91 Aligned_cols=62 Identities=27% Similarity=0.368 Sum_probs=40.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKT 141 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 141 (280)
-|--.|||-+|.++|.++...|..++++..+..-+. -.+.+++.+. +.++..+.+.+...+.
T Consensus 22 ~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~---sa~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 22 FITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVE---SAEEMLEAVKELLPSA 83 (185)
T ss_dssp EEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-S---SHHHHHHHHHHHGGGG
T ss_pred EecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEec---chhhhhhhhccccCcc
Confidence 355678899999999999999999999997642111 3577888886 3466666666666554
No 109
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=78.74 E-value=11 Score=28.58 Aligned_cols=43 Identities=26% Similarity=0.241 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCC
Q 023565 81 GVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126 (280)
Q Consensus 81 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~ 126 (280)
|......|+.+|.+++++.+ ++.|++.++.+||+.+......+
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~~~~~ 45 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDYSDDD 45 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEETTTSS
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhcccccccccccc
Confidence 67778889999955555553 56799999999998887765443
No 110
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=78.20 E-value=32 Score=30.69 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=42.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
+.+.+++|.+-+|...+|--|.+++..|+..|.+++++.. ++.+...++.+|++.++.
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4456677777455555799999999999999997655443 457888889999965544
No 111
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=78.01 E-value=30 Score=31.75 Aligned_cols=58 Identities=21% Similarity=0.374 Sum_probs=40.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
+...+++|.+-+| ..+|..|..++..|+.+|.+.++++. .++.|+..++.+|++.++.
T Consensus 185 ~~~~i~~g~~VlV-~G~G~vG~~a~~lak~~G~~~Vi~~~--~~~~r~~~a~~~Ga~~~i~ 242 (371)
T cd08281 185 NTAGVRPGQSVAV-VGLGGVGLSALLGAVAAGASQVVAVD--LNEDKLALARELGATATVN 242 (371)
T ss_pred hccCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCcEEEEc--CCHHHHHHHHHcCCceEeC
Confidence 3445677777455 56789999999999999985444443 3457888888999965443
No 112
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=77.29 E-value=45 Score=28.50 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHH
Q 023565 52 AYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEIL 131 (280)
Q Consensus 52 a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~ 131 (280)
+..+.....+-|. ..-=|+.+|--...++...++.+. ++.|=.-.-.+++..+.....||+.+..++.. .+..
T Consensus 27 a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~--~ev~ 99 (211)
T COG0800 27 ALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGLN--PEVA 99 (211)
T ss_pred HHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCCC--HHHH
Confidence 3444455556664 233477788888888888888888 55554444457888888889999999888531 2333
Q ss_pred HHHHHHHHhCCCeEEcCCCCCCc
Q 023565 132 EKGEEILKKTPDGYLLRQFENPA 154 (280)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~ 154 (280)
+.+.+. +..|+....+|.
T Consensus 100 ----~~a~~~-~ip~~PG~~Tpt 117 (211)
T COG0800 100 ----KAANRY-GIPYIPGVATPT 117 (211)
T ss_pred ----HHHHhC-CCcccCCCCCHH
Confidence 334444 566665554443
No 113
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=76.98 E-value=13 Score=33.68 Aligned_cols=56 Identities=23% Similarity=0.179 Sum_probs=40.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+...+++|++ ++....|..|.+++..|+.+|.+++++.. ++.|++.++.+||+.+.
T Consensus 159 ~~~~~~~g~~-VlV~G~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 159 LRASLPPGGR-LGLYGFGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred HhcCCCCCCE-EEEEcCCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 3455677777 55555688899989999999987444322 35688899999997654
No 114
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=76.97 E-value=28 Score=31.43 Aligned_cols=58 Identities=33% Similarity=0.410 Sum_probs=39.5
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
+...+.+|.+-+|. .+|..|.+++..|+.+|.+.++++. .++.+...++.+|++.++.
T Consensus 166 ~~~~~~~g~~vlI~-g~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 166 RRSGFKPGDTALVL-GAGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVLD 223 (351)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEC
Confidence 34455677664444 5788999999999999985444443 3556777778888865543
No 115
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=76.84 E-value=42 Score=30.27 Aligned_cols=57 Identities=25% Similarity=0.376 Sum_probs=42.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+...+.+|.+ |+...+|..|.++...|+.+|.+.++++.. ++.+...++.+|++.++
T Consensus 168 ~~~~~~~g~~-vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~ 224 (350)
T cd08256 168 DRANIKFDDV-VVLAGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVL 224 (350)
T ss_pred HhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEe
Confidence 4555677766 444667999999999999999887666554 35677788889986543
No 116
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=76.49 E-value=21 Score=32.37 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=38.9
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 65 ~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
..+|.+ |+...+|..|.+....|+.+|.+.++++.. ++.+++.++.+||+.++.
T Consensus 167 ~~~g~~-VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~--~~~~~~~a~~lGa~~vi~ 220 (343)
T PRK09880 167 DLQGKR-VFVSGVGPIGCLIVAAVKTLGAAEIVCADV--SPRSLSLAREMGADKLVN 220 (343)
T ss_pred CCCCCE-EEEECCCHHHHHHHHHHHHcCCcEEEEEeC--CHHHHHHHHHcCCcEEec
Confidence 346666 555567999999999999999865554432 357888888999976543
No 117
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=76.32 E-value=14 Score=31.47 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=29.0
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEECC
Q 023565 76 TSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILADS 123 (280)
Q Consensus 76 SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~~ 123 (280)
+++.-|+++|....+.|.++++.-..... ....+..+.+|.+++.++-
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~ 53 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDL 53 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCT
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecC
Confidence 45677888888877788776666544321 1223344557777666554
No 118
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=76.31 E-value=42 Score=30.12 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=42.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-CCCEEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIIL 120 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~-~Ga~v~~ 120 (280)
+...+++|.+-+|...+|.-|.+++..|+.+|.+++++. .++.+...++. +|++-++
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~---~~~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSA---GSDEKVDLLKNKLGFDDAF 202 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHhcCCceeE
Confidence 345567887866666679999999999999999855543 23578888887 9986543
No 119
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=75.82 E-value=14 Score=30.39 Aligned_cols=115 Identities=20% Similarity=0.154 Sum_probs=69.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ 149 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (280)
.+|-..+-|+-|+++|..++.+|++++.+-|...+.. ....++.+.. ++++. .++. +...++-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~~------~l~el-------l~~a-Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEYV------SLDEL-------LAQA-DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEES------SHHHH-------HHH--SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hcccccceee------ehhhh-------cchh-hhhhhhh
Confidence 4588888999999999999999999888887754333 3444554221 23332 2333 3443332
Q ss_pred CCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhHH--HHHHHHHhcCCCcEEEEEeC
Q 023565 150 FENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVT--GAGRFLKENNPDIKVYGVEP 209 (280)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~--Gi~~~~k~~~p~~~vigVe~ 209 (280)
-.++.+ ..-+..|.++++ +++.+++-++-|+.+- .+..++++ ..+.-.+.+.
T Consensus 100 plt~~T----~~li~~~~l~~m--k~ga~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lDV 153 (178)
T PF02826_consen 100 PLTPET----RGLINAEFLAKM--KPGAVLVNVARGELVDEDALLDALES--GKIAGAALDV 153 (178)
T ss_dssp SSSTTT----TTSBSHHHHHTS--TTTEEEEESSSGGGB-HHHHHHHHHT--TSEEEEEESS
T ss_pred cccccc----ceeeeeeeeecc--ccceEEEeccchhhhhhhHHHHHHhh--ccCceEEEEC
Confidence 223332 234667888888 4789999999999864 44445544 3344445554
No 120
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.02 E-value=40 Score=30.40 Aligned_cols=74 Identities=24% Similarity=0.259 Sum_probs=52.3
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCcEEEEe-CCCCCHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHHHHHHhCC
Q 023565 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVM-PSTCSMERRIVLRALG-AEIILADSALRFEEILEKGEEILKKTP 142 (280)
Q Consensus 68 g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivv-p~~~~~~~~~~l~~~G-a~v~~~~~~~~~~~~~~~a~~~~~~~~ 142 (280)
|+..+||.+|+-.|+++|.-.++.|-+..+.= ......+..+.++..| ++-+.+|-+ +.++..+.+.+.-++.+
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis-~~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDIS-DREEIYRLAKKVKKEVG 113 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCC-CHHHHHHHHHHHHHhcC
Confidence 45668888889999999999999998544432 2334456667777667 444666654 56788888888877764
No 121
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=74.55 E-value=29 Score=32.67 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=46.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhCCCeEEcCC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKTPDGYLLRQ 149 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~ 149 (280)
.|+..+++..+..++..+-..- .=.|+++.-+-..-...++.+|++++.++-+. +++ .+...+...+....+|+.|
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~p-gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~--~~~l~~~~~~~~k~i~~~p 219 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLLP-GDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQ--PEKLERALAQGARAVILTP 219 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCCC-CCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCC--HHHHHHHHhcCCCEEEECC
Confidence 4888888888877666543221 13455555555666788889999999986421 222 1222222233445677763
Q ss_pred -CCCCc
Q 023565 150 -FENPA 154 (280)
Q Consensus 150 -~~~~~ 154 (280)
.+||.
T Consensus 220 ~p~NPT 225 (431)
T PRK15481 220 RAHNPT 225 (431)
T ss_pred CCCCCC
Confidence 34443
No 122
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=74.23 E-value=35 Score=28.28 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCC-CCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHH
Q 023565 81 GVGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIH 159 (280)
Q Consensus 81 g~alA~~a~~~G~~~~ivvp~-~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 159 (280)
|..+.++++.+|.+..--++. +.-...+......|..|.++++.. ....+.++.+.++.|+.-... ++.+.... -
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~~--~v~~~~~~~l~~~yP~l~i~g-~~g~f~~~-~ 88 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGKP--DVLQQLKVKLIKEYPKLKIVG-AFGPLEPE-E 88 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCCH--HHHHHHHHHHHHHCCCCEEEE-ECCCCChH-H
Confidence 477899999999764222221 111234445556788999998642 233334455555666543221 12222221 1
Q ss_pred HHhHHHHHHHhhC-CCCCEEEEecCCc
Q 023565 160 YETTGPEIWQDSG-GKVDAFISGIGTG 185 (280)
Q Consensus 160 ~~t~~~Ei~~q~~-~~~d~vv~~vG~G 185 (280)
. .++.+++. ..+|.|+|+.|+=
T Consensus 89 ~----~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 89 R----KAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred H----HHHHHHHHHcCCCEEEEEcCCc
Confidence 1 23444442 3589999999874
No 123
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=74.23 E-value=37 Score=30.43 Aligned_cols=57 Identities=30% Similarity=0.468 Sum_probs=41.2
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 60 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
.+...+.+|.+-+|...+|..|.+++..|+.+|.+++++... . +...++.+|++.+.
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~~ 226 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTVI 226 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEEE
Confidence 344556777775666666999999999999999996655432 2 67777889987443
No 124
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=73.84 E-value=30 Score=29.01 Aligned_cols=156 Identities=14% Similarity=0.113 Sum_probs=77.9
Q ss_pred eEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC-CCCHHHHHHH
Q 023565 33 RIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS-TCSMERRIVL 111 (280)
Q Consensus 33 ~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~-~~~~~~~~~l 111 (280)
++|...|.-++| |--.=...++++ .++||+. ++....|.-++++-++...-..+++.+=.+ ..-....+.+
T Consensus 7 ~~F~~~~~~p~T---K~EIRal~ls~L----~~~~g~~-l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~ 78 (187)
T COG2242 7 ELFERDEGGPMT---KEEIRALTLSKL----RPRPGDR-LWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNA 78 (187)
T ss_pred hhhccCCCCCCc---HHHHHHHHHHhh----CCCCCCE-EEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHH
Confidence 456666666555 332222233332 2345554 888888888888888743444444444332 2223345555
Q ss_pred HHCCCE-EEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHH-HhhCCCCCEEEEecCCchhHH
Q 023565 112 RALGAE-IILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW-QDSGGKVDAFISGIGTGGTVT 189 (280)
Q Consensus 112 ~~~Ga~-v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~-~q~~~~~d~vv~~vG~Gg~~~ 189 (280)
+.||.+ +.++.+. -.++.. .+ ..++..|+....+ + +-.+|.+ +-+ ..-..+|+-+-+==+.+
T Consensus 79 ~~fg~~n~~vv~g~--Ap~~L~---~~--~~~daiFIGGg~~---i-----~~ile~~~~~l-~~ggrlV~naitlE~~~ 142 (187)
T COG2242 79 ARFGVDNLEVVEGD--APEALP---DL--PSPDAIFIGGGGN---I-----EEILEAAWERL-KPGGRLVANAITLETLA 142 (187)
T ss_pred HHhCCCcEEEEecc--chHhhc---CC--CCCCEEEECCCCC---H-----HHHHHHHHHHc-CcCCeEEEEeecHHHHH
Confidence 667763 4444432 112111 11 0245666644211 1 1112222 223 22345666666666666
Q ss_pred HHHHHHHhcCCCcEEEEEeCCCCc
Q 023565 190 GAGRFLKENNPDIKVYGVEPSESA 213 (280)
Q Consensus 190 Gi~~~~k~~~p~~~vigVe~~~~~ 213 (280)
-+...++++.-. .|+-|+...+.
T Consensus 143 ~a~~~~~~~g~~-ei~~v~is~~~ 165 (187)
T COG2242 143 KALEALEQLGGR-EIVQVQISRGK 165 (187)
T ss_pred HHHHHHHHcCCc-eEEEEEeecce
Confidence 777777776655 66666665554
No 125
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=73.49 E-value=57 Score=29.70 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=41.1
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-HCCCEEEEE
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR-ALGAEIILA 121 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~-~~Ga~v~~~ 121 (280)
.+.+.+|.+-+|...+|.-|.++...|+.+|.+++++. .++.|...++ .+|++-++.
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEEE
Confidence 45567787755666669999999999999998754433 3456777776 799965544
No 126
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=73.44 E-value=60 Score=29.08 Aligned_cols=58 Identities=28% Similarity=0.387 Sum_probs=37.9
Q ss_pred cCCCCCC--CeEEEEeCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHH-CCCEEEEEC
Q 023565 62 KGLITPG--KTTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPSTCSMERRIVLRA-LGAEIILAD 122 (280)
Q Consensus 62 ~g~~~~g--~~~vv~~SsGN~g~alA~~a~~~G~-~~~ivvp~~~~~~~~~~l~~-~Ga~v~~~~ 122 (280)
.+.+++| .+-+|...+|..|.++...|+.+|. +++++.+ ++++...++. +|++-++..
T Consensus 147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~ 208 (345)
T cd08293 147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINY 208 (345)
T ss_pred hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEEC
Confidence 3445554 5544555568999999889999998 4555433 3467777765 898655443
No 127
>PLN02740 Alcohol dehydrogenase-like
Probab=73.06 E-value=44 Score=30.80 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=40.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+...+++|.+ |+....|.-|.+++..|+.+|.+.++++.. ++.+++.++.+|++.++
T Consensus 192 ~~~~~~~g~~-VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~--~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSS-VAIFGLGAVGLAVAEGARARGASKIIGVDI--NPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCE-EEEECCCHHHHHHHHHHHHCCCCcEEEEcC--ChHHHHHHHHcCCcEEE
Confidence 3455677766 555567999999999999999853444422 45788888889986543
No 128
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=73.01 E-value=36 Score=30.82 Aligned_cols=86 Identities=26% Similarity=0.308 Sum_probs=60.7
Q ss_pred eEEEEeCCCCC-----CCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCC-ChHHHHHHHHHHHcCCcEEEEeCCCC-CH
Q 023565 33 RIAAKLETMEP-----CSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTS-GNTGVGLAFIAAARGYNLIIVMPSTC-SM 105 (280)
Q Consensus 33 ~l~~K~E~~~p-----tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~Ss-GN~g~alA~~a~~~G~~~~ivvp~~~-~~ 105 (280)
+-++|.++--| |-+.---.|+-||.+-... .+|+. |+--++ +--|+++--.|+.+|++.+=|+.+.. -+
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L---~~GD~-vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ie 199 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQL---NKGDS-VIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIE 199 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHhc---CCCCe-eeecCcccHHHHHHHHHHHHhCcceEEEeecCccHH
Confidence 46778777544 4444445667777777653 34554 554433 55677888889999999999997644 45
Q ss_pred HHHHHHHHCCCEEEEEC
Q 023565 106 ERRIVLRALGAEIILAD 122 (280)
Q Consensus 106 ~~~~~l~~~Ga~v~~~~ 122 (280)
+..++++.+||+-++.+
T Consensus 200 el~~~Lk~lGA~~ViTe 216 (354)
T KOG0025|consen 200 ELKKQLKSLGATEVITE 216 (354)
T ss_pred HHHHHHHHcCCceEecH
Confidence 66788899999988886
No 129
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=72.99 E-value=46 Score=32.64 Aligned_cols=52 Identities=27% Similarity=0.286 Sum_probs=43.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (280)
.+++.++.|+.|+.+|..-+..|++++++-++ +++.+.++.+|.+++.-|.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d---~~~~~~~~~~g~~~i~GD~~ 469 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETS---RTRVDELRERGIRAVLGNAA 469 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECC---HHHHHHHHHCCCeEEEcCCC
Confidence 35899999999999999999999998666543 46788888899999888754
No 130
>PRK14030 glutamate dehydrogenase; Provisional
Probab=72.59 E-value=24 Score=33.69 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 023565 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (280)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 100 (280)
-||..+.+..+.+..-......+|+..+.||-|..+|.....+|.+++.|.+
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD 259 (445)
T PRK14030 208 GFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISG 259 (445)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4677777776654332344445699999999999999998888888888654
No 131
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.99 E-value=48 Score=30.40 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=52.1
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 57 KDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 57 ~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
-+|-+++..++|.+ ++....|--|...-.+|+.+|-+=++++.- .+.+++..+.+||+++.-..
T Consensus 159 ~HAcr~~~vk~Gs~-vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~--~~~Rle~Ak~~Ga~~~~~~~ 222 (354)
T KOG0024|consen 159 VHACRRAGVKKGSK-VLVLGAGPIGLLTGLVAKAMGASDVVITDL--VANRLELAKKFGATVTDPSS 222 (354)
T ss_pred hhhhhhcCcccCCe-EEEECCcHHHHHHHHHHHHcCCCcEEEeec--CHHHHHHHHHhCCeEEeecc
Confidence 35667777788866 999999999999999999999887777654 46788888889999887653
No 132
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=71.80 E-value=12 Score=30.30 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=38.5
Q ss_pred EEEeC-C-ChHHHHHHHHHHHcCCcEEEEeCCC--CCH--HHH----HHHHHCCCEEEEEC
Q 023565 72 LIEVT-S-GNTGVGLAFIAAARGYNLIIVMPST--CSM--ERR----IVLRALGAEIILAD 122 (280)
Q Consensus 72 vv~~S-s-GN~g~alA~~a~~~G~~~~ivvp~~--~~~--~~~----~~l~~~Ga~v~~~~ 122 (280)
|+-.+ . +|.++|++..++++|..++++.|++ .++ ..+ +..+..|.++...+
T Consensus 5 i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 5 IAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred EEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 44444 3 8999999999999999999999998 455 233 23344589998885
No 133
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=71.58 E-value=27 Score=31.55 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=41.3
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+...+.+|.+ ++...+|..|.+++..|+.+|.+.++++.. ++.++..++.+|++-++
T Consensus 154 ~~~~~~~g~~-vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 154 HLAQGCEGKN-VIIIGAGTIGLLAIQCAVALGAKSVTAIDI--NSEKLALAKSLGAMQTF 210 (347)
T ss_pred HhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCceEe
Confidence 3445567767 444467999999999999999986555533 45777788899986544
No 134
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=70.34 E-value=48 Score=25.59 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=52.3
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHH-HHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 023565 84 LAFIAAARGYNLIIVMPSTCSMERR-IVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYET 162 (280)
Q Consensus 84 lA~~a~~~G~~~~ivvp~~~~~~~~-~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 162 (280)
|+...+..+.+..|+.......... ......+.++..-.+ +++.+++..|.+.+.+.-....+...|-|.... .+
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~-~~-- 77 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDLTP-DD-- 77 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--H-HH--
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH-HH--
Confidence 3455677788888887554443333 335566777776654 589999999877774433456666777777652 22
Q ss_pred HHHHHHHhhCCCCCEEEEecCCchh
Q 023565 163 TGPEIWQDSGGKVDAFISGIGTGGT 187 (280)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~~vG~Gg~ 187 (280)
-.+.++.+ ...|.|+.|+-=||.
T Consensus 78 -l~~A~~~L-~~~d~VlgPa~DGGy 100 (122)
T PF09837_consen 78 -LEQAFEAL-QRHDVVLGPAEDGGY 100 (122)
T ss_dssp -HHHHHHHT-TT-SEEEEEBTTSSE
T ss_pred -HHHHHHHh-ccCCEEEeeccCCCE
Confidence 22334445 345999999987774
No 135
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=69.69 E-value=41 Score=29.76 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=33.9
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 68 g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
+++-+|...+|..|.+++..|+.+|.++++.... +.+...++.+|++-+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v 195 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGK---ADAADYLKKLGAKEV 195 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHHcCCCEE
Confidence 4453455555999999999999999875544332 456777788887444
No 136
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=69.63 E-value=37 Score=31.28 Aligned_cols=60 Identities=28% Similarity=0.336 Sum_probs=40.2
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 023565 59 AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (280)
Q Consensus 59 a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 122 (280)
+++.-.+.||.. |....-|-.|.....+|+.+|.+++++- .++.|++..+.+||+.+...
T Consensus 158 alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~~---~~~~K~e~a~~lGAd~~i~~ 217 (339)
T COG1064 158 ALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAIT---RSEEKLELAKKLGADHVINS 217 (339)
T ss_pred ehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEEe---CChHHHHHHHHhCCcEEEEc
Confidence 344555678866 7777777666666667777776666554 34577777777777776664
No 137
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=69.57 E-value=76 Score=28.39 Aligned_cols=53 Identities=28% Similarity=0.462 Sum_probs=38.5
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (280)
...+.+|.+-+| ..+|..|.++...|+..|.+.++.+... +.+...++.+|++
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~ 215 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGAT 215 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCc
Confidence 344566666555 5689999999999999999865555443 4567777888884
No 138
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=69.48 E-value=22 Score=33.69 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=40.6
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 63 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
+...+|.+ ++..+.|.-|+.+|..++.+|.++++ +. .++.+....+.+|++++
T Consensus 197 ~~~l~Gkt-VvViG~G~IG~~va~~ak~~Ga~ViV-~d--~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAGKV-AVVAGYGDVGKGCAQSLRGQGARVIV-TE--VDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEE-EE--CChhhHHHHHhcCCEEc
Confidence 44445555 99999999999999999999997555 32 24567778888999664
No 139
>PRK08862 short chain dehydrogenase; Provisional
Probab=69.36 E-value=70 Score=27.12 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=34.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEE
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILA 121 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~ 121 (280)
..-+|+..++.-|+++|......|.+++++-..... ....+.++..|.+++.+
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 355778878888999999999999886665332111 12234455667666544
No 140
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=69.15 E-value=40 Score=30.29 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=37.7
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 66 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
.+|.+-+| ..+|..|.++...|+.+|.+.++++ ..++.+...++.+|++.++
T Consensus 162 ~~g~~vlV-~~~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 162 LVGEDVLI-TGAGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCCCeEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 35666555 4578999999999999998644555 3556778888889986544
No 141
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=69.11 E-value=36 Score=31.14 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=40.5
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+.+.+.+|.+-+|. .+|..|.+++..|+.+|...++++.. ++.+++.++.+|++-++
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~i 234 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDFI 234 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcEe
Confidence 44566777774444 67999999999999999854444432 45788888889985443
No 142
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=69.05 E-value=32 Score=30.05 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=43.9
Q ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecC
Q 023565 108 RIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIG 183 (280)
Q Consensus 108 ~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG 183 (280)
.+.+...||++.+.--. +....+.++++++. +..++.|.|-... +.-..+..+|-+++ +++|.+|-+++
T Consensus 25 Ak~l~~~GAeL~fTy~~---e~l~krv~~la~~~-~s~~v~~cDV~~d--~~i~~~f~~i~~~~-g~lD~lVHsIa 93 (259)
T COG0623 25 AKALAEQGAELAFTYQG---ERLEKRVEELAEEL-GSDLVLPCDVTND--ESIDALFATIKKKW-GKLDGLVHSIA 93 (259)
T ss_pred HHHHHHcCCEEEEEecc---HHHHHHHHHHHhhc-cCCeEEecCCCCH--HHHHHHHHHHHHhh-CcccEEEEEec
Confidence 45677889999887532 34566777888777 3444445542221 34455566666666 57898888876
No 143
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=69.02 E-value=63 Score=28.93 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=37.7
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 64 LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 64 ~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
.++++.+ ++...+|..|.+++..|+.+|.+++++.+ ++.++..++.+|++-++
T Consensus 160 ~~~~~~~-vlV~g~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i 212 (333)
T cd08296 160 GAKPGDL-VAVQGIGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHYI 212 (333)
T ss_pred CCCCCCE-EEEECCcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEEe
Confidence 4566666 55555899999999999999998555433 34677777888885443
No 144
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=68.95 E-value=43 Score=29.51 Aligned_cols=54 Identities=31% Similarity=0.347 Sum_probs=36.2
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
...+.+|.+-+|...+|..|.+++..|+.+|.+.+++... ..+.+.++.+|++-
T Consensus 134 ~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~ 187 (324)
T cd08292 134 FLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR---DAGVAELRALGIGP 187 (324)
T ss_pred hhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHhcCCCE
Confidence 3456677664454556889999999999999887666443 34555556667643
No 145
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=68.80 E-value=59 Score=29.32 Aligned_cols=57 Identities=26% Similarity=0.214 Sum_probs=39.6
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 60 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
.+...+++|.+-+|. .+|..|.+++..|+.+|.+.++.+... +.+....+.+|++.+
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~g~~~~ 215 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGSR--PNRVELAKEYGATDI 215 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHcCCceE
Confidence 344556777764444 678999999999999998755554332 467777788887543
No 146
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=68.74 E-value=42 Score=30.65 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=40.4
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+...+.+|.+ |+...+|..|.+++..|+.+|...++++.. ++.+++.++.+|++.+.
T Consensus 181 ~~~~~~~g~~-VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~--~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 181 NVAKVKKGST-VAIFGLGAVGLAVAEGARIRGASRIIGVDL--NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred hhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCceEE
Confidence 3345677777 555567999999999999999854444432 34688888999996544
No 147
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=68.52 E-value=43 Score=30.69 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=40.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+...+++|.+ ++...+|.-|.+.+..|+.+|.+.++++. .++.+++.++.+|++.++
T Consensus 179 ~~~~~~~g~~-VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~--~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDT-VAVFGLGGIGLSVIQGARMAKASRIIAID--INPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHhCCCeEE
Confidence 3455677777 44446799999999999999985444442 245788888889986544
No 148
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=68.50 E-value=65 Score=28.84 Aligned_cols=58 Identities=28% Similarity=0.367 Sum_probs=40.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
+...+.+|.+-+|. .+|-.|.+++..|+.+|.+-++++. .++.+.+.++.+|++.++.
T Consensus 157 ~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~--~~~~~~~~~~~~ga~~~i~ 214 (339)
T cd08239 157 RRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGVD--PSPERLELAKALGADFVIN 214 (339)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEc
Confidence 33345677774554 6789999999999999998333333 2456778888899865443
No 149
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=68.47 E-value=76 Score=27.17 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=23.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVM 99 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivv 99 (280)
.+|+.++|.-|+++|......|.+++++-
T Consensus 3 vlItGas~gIG~aia~~l~~~G~~V~~~~ 31 (259)
T PRK08340 3 VLVTASSRGIGFNVARELLKKGARVVISS 31 (259)
T ss_pred EEEEcCCcHHHHHHHHHHHHcCCEEEEEe
Confidence 37888889999999988888888765543
No 150
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=68.41 E-value=33 Score=31.39 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=40.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+...+++|.+-+|. .+|..|.+++..|+.+|.+.++++.. ++.|++.++.+|++.++
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~~~--~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGIDI--NPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCEEE
Confidence 34556777774454 67999999999999999854444422 35677788889986544
No 151
>PRK06348 aspartate aminotransferase; Provisional
Probab=68.22 E-value=99 Score=28.44 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=35.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 122 (280)
.|+..+++.+|..++..+-. +-.-.|+++...-..-...++.+|++++.++
T Consensus 91 ~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~ 141 (384)
T PRK06348 91 EIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPIILE 141 (384)
T ss_pred hEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEec
Confidence 37888888888776666542 2223566666555566677788899998886
No 152
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=68.19 E-value=15 Score=36.17 Aligned_cols=55 Identities=20% Similarity=0.264 Sum_probs=41.8
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC------------------CCHHHHHHHHHCCCEEEEE
Q 023565 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST------------------CSMERRIVLRALGAEIILA 121 (280)
Q Consensus 66 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~------------------~~~~~~~~l~~~Ga~v~~~ 121 (280)
.+|.+ |+...+|-.|.+.|..++..|.+++++=... ....+++.++.+|+++..-
T Consensus 135 ~~g~~-V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 135 DTGKR-VAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CCCCE-EEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 34544 9999999999999999999999977764221 2245677788899987654
No 153
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=68.05 E-value=58 Score=26.48 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=51.6
Q ss_pred CCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC---------CCCHHHHHHHHH
Q 023565 43 PCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS---------TCSMERRIVLRA 113 (280)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~---------~~~~~~~~~l~~ 113 (280)
|.--+-++.....+.+|.+.|. ..-+|.+|+|-+++-++-+...- +++++|.-. ..+++-.+.++.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEGD-LKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhcccC-ceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 5556678888888999988875 33345555588877666554332 777777622 246778888899
Q ss_pred CCCEEEEEC
Q 023565 114 LGAEIILAD 122 (280)
Q Consensus 114 ~Ga~v~~~~ 122 (280)
.|++|..-.
T Consensus 82 rGa~v~~~s 90 (186)
T COG1751 82 RGAKVLTQS 90 (186)
T ss_pred cCceeeeeh
Confidence 999987654
No 154
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=68.05 E-value=38 Score=31.16 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=36.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
.|+..+|+..+..++..+....-+-.|+++.-+-..-...++.+|++++.++.
T Consensus 93 ~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~ 145 (374)
T PRK02610 93 NISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGR 145 (374)
T ss_pred HEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecC
Confidence 37777777887766555544332225667766666677788999999999874
No 155
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=68.04 E-value=43 Score=29.96 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=37.1
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 64 LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 64 ~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
.++++..-+|...++..|.+++..|+.+|.+++++... +.+...++.+|++-+
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v 214 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADAF 214 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcEE
Confidence 45666675556666779999999999999976555433 356666677886543
No 156
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=67.68 E-value=37 Score=32.57 Aligned_cols=53 Identities=13% Similarity=-0.047 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 023565 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (280)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 101 (280)
-+|..+.+..+.+.........+++..+.||-|..+|.....+|.+++.+.+.
T Consensus 217 G~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~ 269 (454)
T PTZ00079 217 GYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDS 269 (454)
T ss_pred HHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 35777777766543222323456999999999999999888888887766543
No 157
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=67.31 E-value=33 Score=30.37 Aligned_cols=55 Identities=27% Similarity=0.415 Sum_probs=39.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
+.+.+.+|.+-+|. .+|-.|.+++..|+.+|.+.+++. .++.+...++.+|+...
T Consensus 149 ~~~~~~~g~~vlV~-g~g~vg~~~~q~a~~~G~~vi~~~---~~~~~~~~~~~~g~~~~ 203 (319)
T cd08242 149 EQVPITPGDKVAVL-GDGKLGLLIAQVLALTGPDVVLVG---RHSEKLALARRLGVETV 203 (319)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCcEE
Confidence 45566777774555 578999999999999999844432 23567777777888643
No 158
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=67.15 E-value=77 Score=29.08 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=31.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
|+..+++..+..++..+- ..-.-.|++|...-..-....+.+|++++.++-
T Consensus 94 vi~t~G~~~~l~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~ 144 (383)
T TIGR03540 94 VLSLIGSKEGIAHIPLAF-VNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPL 144 (383)
T ss_pred EEECCCcHHHHHHHHHHh-CCCCCEEEEeCCCCcchHHHHHhcCCEEEEEec
Confidence 666677777776665543 222234555554433444567889999988864
No 159
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.01 E-value=72 Score=27.83 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=21.0
Q ss_pred eEEEEeCC--ChHHHHHHHHHHHcCCcEEEE
Q 023565 70 TTLIEVTS--GNTGVGLAFIAAARGYNLIIV 98 (280)
Q Consensus 70 ~~vv~~Ss--GN~g~alA~~a~~~G~~~~iv 98 (280)
.-+|+.++ +--|.++|......|.++++.
T Consensus 12 ~~lItGas~~~GIG~aia~~la~~G~~V~l~ 42 (272)
T PRK08159 12 RGLILGVANNRSIAWGIAKACRAAGAELAFT 42 (272)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 44666654 568888888888888876654
No 160
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=66.45 E-value=36 Score=31.96 Aligned_cols=90 Identities=9% Similarity=-0.015 Sum_probs=43.2
Q ss_pred cCCcEEEEeCCCCCHHHHHHHHHCCCEE-EEECCCCCHH--HHHHHHHHHHHhCCCeEE-c-CCC-CCCccHHHHHHhHH
Q 023565 91 RGYNLIIVMPSTCSMERRIVLRALGAEI-ILADSALRFE--EILEKGEEILKKTPDGYL-L-RQF-ENPANPKIHYETTG 164 (280)
Q Consensus 91 ~G~~~~ivvp~~~~~~~~~~l~~~Ga~v-~~~~~~~~~~--~~~~~a~~~~~~~~~~~~-~-~~~-~~~~~~~~g~~t~~ 164 (280)
+-.|..|+.-.+.-...-..++.+|.+. .++.+ ..+. ...++..+..++. +..+ + +.. .||.. ....-+
T Consensus 24 f~~P~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~-~~~~~~g~~~~v~~~L~~~-gi~~~~~~~v~~~P~~---~~v~~~ 98 (395)
T PRK15454 24 FSVPPVTLCGPGAVSSCGQQAQTRGLKHLFVMAD-SFLHQAGMTAGLTRSLAVK-GIAMTLWPCPVGEPCI---TDVCAA 98 (395)
T ss_pred eecCCeEEECcCHHHHHHHHHHhcCCCEEEEEcC-cchhhCccHHHHHHHHHHc-CCeEEEECCCCCCcCH---HHHHHH
Confidence 4455666665555444445667777444 44432 2222 1234455555544 3221 1 111 23332 122334
Q ss_pred HHHHHhhCCCCCEEEEecCCchhH
Q 023565 165 PEIWQDSGGKVDAFISGIGTGGTV 188 (280)
Q Consensus 165 ~Ei~~q~~~~~d~vv~~vG~Gg~~ 188 (280)
.++.++. ++| +|+++|||+.+
T Consensus 99 ~~~~r~~--~~D-~IiavGGGS~i 119 (395)
T PRK15454 99 VAQLRES--GCD-GVIAFGGGSVL 119 (395)
T ss_pred HHHHHhc--CcC-EEEEeCChHHH
Confidence 4555553 577 57789987754
No 161
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=66.04 E-value=52 Score=29.43 Aligned_cols=66 Identities=18% Similarity=0.096 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 023565 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (280)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (280)
.-.+...+..+.+.-...-...+++..+.|+.|+++|..++.+|.+++++-.. +.+......+|.+
T Consensus 131 ~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~---~~~~~~~~~~g~~ 196 (287)
T TIGR02853 131 IPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARS---SADLARITEMGLI 196 (287)
T ss_pred HhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCe
Confidence 33455555555443111112345888888999999999999999876655432 2344445556654
No 162
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=65.92 E-value=1.2e+02 Score=28.59 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=34.5
Q ss_pred CCCCCCchhhHHHHHHHHHHHHcCCCCCC-CeEEEEeCCChHHHH--HHHHHHHcCCcEEEEe
Q 023565 40 TMEPCSSVKDRIAYSMIKDAEDKGLITPG-KTTLIEVTSGNTGVG--LAFIAAARGYNLIIVM 99 (280)
Q Consensus 40 ~~~ptGS~K~R~a~~~l~~a~~~g~~~~g-~~~vv~~SsGN~g~a--lA~~a~~~G~~~~ivv 99 (280)
+.+|.|.- +.....+.....+|.+..| ...+|+..|+..|.| +|.+. ..|..++++.
T Consensus 14 ~~hp~gc~--~~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 14 TAHPVGCE--ANVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCHHHH--HHHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 45677753 3345666777777777444 444556666666666 45555 5787766664
No 163
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=65.74 E-value=47 Score=30.80 Aligned_cols=125 Identities=21% Similarity=0.174 Sum_probs=68.8
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCC
Q 023565 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTP 142 (280)
Q Consensus 63 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 142 (280)
..+.+|.+-+|...+|..|.+++..|+.+|.+.+++. .+..+...++.+|+..++-.... +..... .+
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~~~~~---~~~~~~----~~-- 252 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVIDRNDF---GHWGRL----PD-- 252 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEecCCCc---chhhcc----cc--
Confidence 4456666655555569999999999999999865543 34567788888998765443211 110000 00
Q ss_pred CeEEcCCCCCCccHHHHHHhHHHHHHHhhC-CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEe
Q 023565 143 DGYLLRQFENPANPKIHYETTGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVE 208 (280)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~-~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe 208 (280)
. + . .+.............++.+..+ ..+|.|+-++|. .. +...++.+.+.-+++.+-
T Consensus 253 ~--~--~-~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~-~~---~~~~~~~l~~~G~~v~~g 310 (398)
T TIGR01751 253 L--N--T-QAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGR-AT---FPTSVFVCRRGGMVVICG 310 (398)
T ss_pred c--c--c-cccchhhhcchhHHHHHHHHcCCCCceEEEECCcH-HH---HHHHHHhhccCCEEEEEc
Confidence 0 0 0 0000000111233445555553 348988888863 32 334555556666666663
No 164
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=65.66 E-value=52 Score=29.07 Aligned_cols=51 Identities=25% Similarity=0.323 Sum_probs=37.5
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 67 ~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+|.+-+|...+|..|.+++..|+.+|.+++++.. +++|.+.++.+|++-++
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~---~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTG---RPEEADYLRSLGASEII 196 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 4445445555599999999999999998665543 45788888999995444
No 165
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=65.62 E-value=62 Score=25.35 Aligned_cols=53 Identities=30% Similarity=0.335 Sum_probs=38.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC----HHHHHHHHHCCCEEEEECC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS----MERRIVLRALGAEIILADS 123 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~----~~~~~~l~~~Ga~v~~~~~ 123 (280)
-+|+..++.-|+++|..-...|-..++++..+.+ ......++..|.++..+..
T Consensus 3 ~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~ 59 (167)
T PF00106_consen 3 VLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIEC 59 (167)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred EEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccc
Confidence 4788888999999999988887776666665522 2234556777888777653
No 166
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=65.56 E-value=52 Score=28.09 Aligned_cols=53 Identities=30% Similarity=0.357 Sum_probs=36.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
.+-+|+..+|.-|.++|......|.+++++-...........++..|.++..+
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~ 61 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALAL 61 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEE
Confidence 35588888899999999999999998776644322223344555667776544
No 167
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=65.51 E-value=42 Score=28.81 Aligned_cols=59 Identities=25% Similarity=0.296 Sum_probs=40.4
Q ss_pred HHHHHHHcCCCCCCCeEEEEe-CCC---hHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCC
Q 023565 55 MIKDAEDKGLITPGKTTLIEV-TSG---NTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGA 116 (280)
Q Consensus 55 ~l~~a~~~g~~~~g~~~vv~~-SsG---N~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga 116 (280)
-+-.|++.|.- .+.+|++ |+| .+..|||.||++.|=+.+.++|+..+ ..-.+.|..+|.
T Consensus 31 EfISAlAAG~n---AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 31 EFISALAAGWN---AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHHHHHhcccc---ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 33445566652 2335555 444 36899999999999999999998654 455666666665
No 168
>PRK12743 oxidoreductase; Provisional
Probab=65.30 E-value=45 Score=28.54 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=38.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEEC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~ 122 (280)
+-+|+.++|.-|.++|......|.+++++...+.+ ......++.+|.++..+.
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQ 58 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEE
Confidence 45888888999999999999999988776544322 233456667887776553
No 169
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=65.30 E-value=57 Score=29.25 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=36.9
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 65 ~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
..+|.+-+|. .+|-.|.+++..|+.+|.+.++++ ..++.+...++.+|++.+
T Consensus 159 ~~~g~~vlI~-~~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~ 210 (340)
T TIGR00692 159 PISGKSVLVT-GAGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYV 210 (340)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEE
Confidence 4566665564 468888888889999998755555 345678888888887543
No 170
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=65.17 E-value=50 Score=30.66 Aligned_cols=95 Identities=17% Similarity=0.235 Sum_probs=44.7
Q ss_pred cEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCC--HHHHHHHHHHHHHhCCCeEE-cCCC-CCCccHHHHHHhHHHHHHH
Q 023565 94 NLIIVMPSTCSMERRIVLRALGAEIILADSALR--FEEILEKGEEILKKTPDGYL-LRQF-ENPANPKIHYETTGPEIWQ 169 (280)
Q Consensus 94 ~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~--~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~g~~t~~~Ei~~ 169 (280)
|..++.-++.-...-..++.+|-++.++.+... .....+...+..++.+-.+. .+.. .||..- ...-+.++++
T Consensus 4 p~~i~fG~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~---~v~~~~~~~~ 80 (380)
T cd08185 4 PTKIVFGAGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTT---TVMEGAALAR 80 (380)
T ss_pred CCeEEECcCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHH---HHHHHHHHHH
Confidence 455555555544445556667777766654322 12344555555554421222 2222 133221 1222334444
Q ss_pred hhCCCCCEEEEecCCchhHHHHHHHH
Q 023565 170 DSGGKVDAFISGIGTGGTVTGAGRFL 195 (280)
Q Consensus 170 q~~~~~d~vv~~vG~Gg~~~Gi~~~~ 195 (280)
+. ++| +|+++|||+.+ =+++++
T Consensus 81 ~~--~~D-~IiavGGGS~i-D~aK~i 102 (380)
T cd08185 81 EE--GCD-FVVGLGGGSSM-DTAKAI 102 (380)
T ss_pred Hc--CCC-EEEEeCCccHH-HHHHHH
Confidence 43 577 46788877654 334433
No 171
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=64.96 E-value=53 Score=29.22 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=34.5
Q ss_pred CeEEEE-eCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIE-VTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 122 (280)
...++. ..+|..|.++...|+.+|.+++++.+ ++.+.+.++.+|++-++..
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~~ 195 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLNS 195 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEEC
Confidence 343444 56688888888888889987544432 3567777788888765543
No 172
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=64.88 E-value=1.2e+02 Score=28.06 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=43.9
Q ss_pred CCCchhhHHHHHHHHHHHHcCC--CCCCCeEEEEeCCChHHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 43 PCSSVKDRIAYSMIKDAEDKGL--ITPGKTTLIEVTSGNTGVGLAFIAAAR--GYNLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~--~~~g~~~vv~~SsGN~g~alA~~a~~~--G~~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
+.|.-+.|-+....... ..|. +.+. ..|+..+++..+..++..+-.- |-.-.|++|.-.-..-...++.+|+++
T Consensus 64 ~~G~~~lr~~ia~~~~~-~~g~~~~~~~-~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~ 141 (396)
T PRK09147 64 TAGLPALREAIAAWLER-RYGLPALDPA-TQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEP 141 (396)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCcCCcc-ceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEE
Confidence 46666666543322211 1242 2332 2377777788877666554321 113345555544445566678899999
Q ss_pred EEECC
Q 023565 119 ILADS 123 (280)
Q Consensus 119 ~~~~~ 123 (280)
+.++-
T Consensus 142 ~~vp~ 146 (396)
T PRK09147 142 YFLNC 146 (396)
T ss_pred EEecc
Confidence 99874
No 173
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=64.74 E-value=67 Score=29.27 Aligned_cols=59 Identities=22% Similarity=0.314 Sum_probs=46.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-CCCEEEEEC
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIILAD 122 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~-~Ga~v~~~~ 122 (280)
+-|..++|.+-+|++.+|--|.-+.-.|+..|.+++-+.. +++|.+.+.. +|-+..+--
T Consensus 144 ~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~idy 203 (340)
T COG2130 144 DIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGIDY 203 (340)
T ss_pred HhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceeeec
Confidence 4566677888889999999999999999999988887764 3588888887 776665443
No 174
>PRK08703 short chain dehydrogenase; Provisional
Probab=64.34 E-value=86 Score=26.34 Aligned_cols=31 Identities=35% Similarity=0.342 Sum_probs=23.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVM 99 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivv 99 (280)
.+-+|+.++|.-|.++|......|.+++++-
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~ 37 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVA 37 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 3557888889999999988877787755543
No 175
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=64.19 E-value=1.1e+02 Score=28.14 Aligned_cols=85 Identities=16% Similarity=0.239 Sum_probs=49.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeC-CCCCHHHHHHHHHCCCEEEEECCCCCHHH-HHHHHHHHHHhCCCeEEc
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMP-STCSMERRIVLRALGAEIILADSALRFEE-ILEKGEEILKKTPDGYLL 147 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp-~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~ 147 (280)
.+++.+++|..|.-.|..=-..-=+.++++. ..-.+.-.+..+.|||+|..++...+-.- -.+....+++..++.+|+
T Consensus 69 ~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv 148 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFV 148 (385)
T ss_pred ceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEE
Confidence 3478888887776665554333333444443 33466677788889999988863221111 122334455566778888
Q ss_pred CCCCCCc
Q 023565 148 RQFENPA 154 (280)
Q Consensus 148 ~~~~~~~ 154 (280)
.+.+...
T Consensus 149 ~hgdsST 155 (385)
T KOG2862|consen 149 THGDSST 155 (385)
T ss_pred EecCccc
Confidence 7765543
No 176
>PRK07550 hypothetical protein; Provisional
Probab=64.09 E-value=1.1e+02 Score=28.08 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=45.7
Q ss_pred CCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 023565 44 CSSVKDRIAYSMIKDAEDKGL-ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (280)
Q Consensus 44 tGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 122 (280)
.|.-..|.+..-.... ..|. ..+ ..|+..++++.+..++..+- .+-.-.|++|...-..-...++..|++++.++
T Consensus 67 ~G~~~lr~~ia~~~~~-~~g~~~~~--~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 142 (386)
T PRK07550 67 EGLPELREAYAAHYSR-LYGAAISP--EQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLP 142 (386)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCc--ceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEe
Confidence 5776667554432211 1222 233 23777777788876665553 34445677776554455567788999999987
Q ss_pred C
Q 023565 123 S 123 (280)
Q Consensus 123 ~ 123 (280)
.
T Consensus 143 ~ 143 (386)
T PRK07550 143 C 143 (386)
T ss_pred c
Confidence 5
No 177
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=64.00 E-value=39 Score=28.91 Aligned_cols=52 Identities=23% Similarity=0.071 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 023565 50 RIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (280)
Q Consensus 50 R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 101 (280)
||..+.+..+.+.-.......+++..+-||-|+.+|......|.+.+.+.+.
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 5666667665543222333456999999999999999999999888888765
No 178
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=63.94 E-value=71 Score=27.30 Aligned_cols=52 Identities=23% Similarity=0.261 Sum_probs=37.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
.+-+|+..++.-|+++|......|.+++++-.. ..+.....++..|.++..+
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~-~~~~~~~~~~~~~~~~~~~ 60 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVA-EAPETQAQVEALGRKFHFI 60 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCc-hHHHHHHHHHHcCCeEEEE
Confidence 355888888999999999999999998776432 2233345566678776544
No 179
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=63.56 E-value=33 Score=32.64 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=40.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC-----CCHHHHHHHHHCCCEEEEE
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST-----CSMERRIVLRALGAEIILA 121 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-----~~~~~~~~l~~~Ga~v~~~ 121 (280)
++++..++||.|.-+|..+..+|.+++++.... .....++.++..|.+++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 329 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFL 329 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEec
Confidence 349999999999999999999999999887543 2234456677788887654
No 180
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=63.32 E-value=1e+02 Score=26.85 Aligned_cols=53 Identities=32% Similarity=0.423 Sum_probs=36.1
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHCCCE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYN-LIIVMPSTCSMERRIVLRALGAE 117 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~-~~ivvp~~~~~~~~~~l~~~Ga~ 117 (280)
+...+++|.+-+|. .+|-.|.+++..|+.+|.+ +++ +.. .+.+...++.+|++
T Consensus 123 ~~~~~~~~~~vlI~-g~g~vg~~~~~la~~~g~~~v~~-~~~--~~~~~~~~~~~g~~ 176 (312)
T cd08269 123 RRGWIRAGKTVAVI-GAGFIGLLFLQLAAAAGARRVIA-IDR--RPARLALARELGAT 176 (312)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEE-ECC--CHHHHHHHHHhCCc
Confidence 34556677675555 5688999999999999988 444 322 24566677778874
No 181
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=63.24 E-value=85 Score=26.78 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=37.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|.-|.++|......|.+++++ .........+.++..+.++..+.
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~ 63 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGI-NIVEPTETIEQVTALGRRFLSLT 63 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEe-cCcchHHHHHHHHhcCCeEEEEE
Confidence 355888889999999999999999987655 33333445566666776665544
No 182
>PLN02827 Alcohol dehydrogenase-like
Probab=62.98 E-value=67 Score=29.65 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=40.3
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
...+.+|.+ |+...+|--|.+++..|+.+|.+.++++.. ++.|.+.++.+|++-++
T Consensus 188 ~~~~~~g~~-VlV~G~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~i 243 (378)
T PLN02827 188 VADVSKGSS-VVIFGLGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDFI 243 (378)
T ss_pred hcCCCCCCE-EEEECCCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEEE
Confidence 445677777 554567889999999999999865555433 45778888889996543
No 183
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=62.93 E-value=61 Score=28.58 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=40.9
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 63 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
+.+.+|.+-+|...+|..|.+++..|+.+|.+.+++. .++.+...++.+|++.+..
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITT---SSEEKVDFCKKLAAIILIR 191 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEEe
Confidence 4566777755655679999999999999999876543 2356777777899864443
No 184
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=62.60 E-value=1.2e+02 Score=27.52 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=74.5
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEeC-CChHHHHHHHHHHHcCCcEEEEeCCCC-----------CHH---HH--H-HHHHC
Q 023565 53 YSMIKDAEDKGLITPGKTTLIEVT-SGNTGVGLAFIAAARGYNLIIVMPSTC-----------SME---RR--I-VLRAL 114 (280)
Q Consensus 53 ~~~l~~a~~~g~~~~g~~~vv~~S-sGN~g~alA~~a~~~G~~~~ivvp~~~-----------~~~---~~--~-~l~~~ 114 (280)
...+..+++++. ..|+... ..+.-...-..++..|+|++.+-.... ... .. + ..+.+
T Consensus 70 ~~~i~~li~~~v-----dgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l 144 (336)
T PRK15408 70 VQLINNFVNQGY-----NAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQV 144 (336)
T ss_pred HHHHHHHHHcCC-----CEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhc
Confidence 356667777775 2354443 233333444556778999888743210 011 11 1 12233
Q ss_pred C---CEEEEECCCC---CHHHHHHHHHHHH-HhCCCeEEcC-CCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCch
Q 023565 115 G---AEIILADSAL---RFEEILEKGEEIL-KKTPDGYLLR-QFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186 (280)
Q Consensus 115 G---a~v~~~~~~~---~~~~~~~~a~~~~-~~~~~~~~~~-~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg 186 (280)
| .+|..+.+.. +..++.+-.++.. ++.++.-.+. ++.+.. ...++ ....++++.- +++|.|+++ +..
T Consensus 145 ~~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d-~~~a~-~~~~~lL~~~-pdi~aI~~~--~~~ 219 (336)
T PRK15408 145 GKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYND-ATKSL-QTAEGILKAY-PDLDAIIAP--DAN 219 (336)
T ss_pred CCCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCCCc-HHHHH-HHHHHHHHHC-CCCcEEEEC--CCc
Confidence 3 5775554321 1122222223322 3344444433 233222 21233 3455666664 689999987 334
Q ss_pred hHHHHHHHHHhcCC-CcEEEEEeC
Q 023565 187 TVTGAGRFLKENNP-DIKVYGVEP 209 (280)
Q Consensus 187 ~~~Gi~~~~k~~~p-~~~vigVe~ 209 (280)
.+.|++.++++.+. ++.|+|++.
T Consensus 220 ~~~Ga~~Al~~~g~~~v~VvG~D~ 243 (336)
T PRK15408 220 ALPAAAQAAENLKRDKVAIVGFST 243 (336)
T ss_pred cHHHHHHHHHhCCCCCEEEEEeCC
Confidence 45588899988653 678888874
No 185
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=62.42 E-value=34 Score=31.54 Aligned_cols=54 Identities=37% Similarity=0.426 Sum_probs=40.1
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 64 LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 64 ~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
.+.+|.+-+|...+|..|.+++..|+.+|.+.+++. .++.+...++.+|++.++
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 456666644554469999999999999999976553 356788888889986544
No 186
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=62.06 E-value=77 Score=27.05 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=36.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|.-|.++|..-...|.+++++......+.....+...+.++..+.
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQ 69 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEE
Confidence 355888888999999999998999998877654222233344555676655443
No 187
>PRK08628 short chain dehydrogenase; Provisional
Probab=61.98 E-value=80 Score=26.87 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=37.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|--|.++|..-...|.+++++............++..|.++..+.
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 61 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQ 61 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEE
Confidence 355888888999999999999999998776543322233455566677765554
No 188
>PRK08589 short chain dehydrogenase; Validated
Probab=61.45 E-value=63 Score=28.02 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=36.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
.+-+|+..+|--|+++|......|.+++++-...........++..+.++..+
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~ 59 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAY 59 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEE
Confidence 45588888899999999998889998877754411122344556667665544
No 189
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=61.41 E-value=1e+02 Score=29.39 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=48.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHH----HHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEc
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRI----VLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLL 147 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~----~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (280)
.+..+||-.|..++..+- ++-.-.|++|...-..... .++.+|+++.+++...+.+ ..+. ...++...+|+
T Consensus 79 av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~-~l~~---~I~~~Tk~I~~ 153 (432)
T PRK06702 79 AVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTAD-EIVA---LANDKTKLVYA 153 (432)
T ss_pred EEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHH-HHHH---hCCcCCeEEEE
Confidence 677889999888888754 3433567777755433233 2688999999998532322 2222 22333456777
Q ss_pred CCCCCCc
Q 023565 148 RQFENPA 154 (280)
Q Consensus 148 ~~~~~~~ 154 (280)
....||.
T Consensus 154 e~pgnP~ 160 (432)
T PRK06702 154 ESLGNPA 160 (432)
T ss_pred EcCCCcc
Confidence 6666776
No 190
>PRK10083 putative oxidoreductase; Provisional
Probab=61.22 E-value=72 Score=28.46 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=41.6
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAA-RGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 60 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~-~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
.+...+.+|.+ |+...+|--|.+++..|+. +|.+.++++.. ++.|...++.+|++-++.
T Consensus 153 ~~~~~~~~g~~-vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i~ 212 (339)
T PRK10083 153 TGRTGPTEQDV-ALIYGAGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVIN 212 (339)
T ss_pred HHhcCCCCCCE-EEEECCCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEec
Confidence 34455677766 5555578888888888885 69887666543 567888888999965543
No 191
>PLN00175 aminotransferase family protein; Provisional
Probab=61.18 E-value=1.2e+02 Score=28.28 Aligned_cols=51 Identities=8% Similarity=0.030 Sum_probs=33.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
|+..+|+..|..++..+- +.-.-.|++++..-..-...++.+|++++.++-
T Consensus 118 I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~ 168 (413)
T PLN00175 118 VTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTL 168 (413)
T ss_pred EEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEEC
Confidence 677777778776666543 333345555554445556777889999998864
No 192
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=60.61 E-value=36 Score=33.27 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=41.3
Q ss_pred EEEEeCC---ChHHHHHHHHHHHcC-CcEEEEeCCCC--CHHHHHHHHHCCCEEEEEC
Q 023565 71 TLIEVTS---GNTGVGLAFIAAARG-YNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (280)
Q Consensus 71 ~vv~~Ss---GN~g~alA~~a~~~G-~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~~ 122 (280)
+|+-.+. +|.++|++..++.+| +.++++.|+.. ++..+..++..|+.+..++
T Consensus 176 kVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~ 233 (525)
T PRK13376 176 HIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFS 233 (525)
T ss_pred EEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 3666666 699999999999998 99999999875 4555666777888887765
No 193
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=60.45 E-value=1.3e+02 Score=27.14 Aligned_cols=53 Identities=26% Similarity=0.380 Sum_probs=36.5
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~-~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
.+...+|.+-+|. .+|..|.+++..|+.+|. +++++. .++.+...++.+|++-
T Consensus 172 ~~~~~~g~~vlI~-g~g~vG~~~~~lak~~G~~~v~~~~---~~~~~~~~~~~~g~~~ 225 (361)
T cd08231 172 AGPVGAGDTVVVQ-GAGPLGLYAVAAAKLAGARRVIVID---GSPERLELAREFGADA 225 (361)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc---CCHHHHHHHHHcCCCe
Confidence 3444466664555 579999999999999999 444432 2456777778888743
No 194
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.35 E-value=57 Score=29.91 Aligned_cols=61 Identities=26% Similarity=0.377 Sum_probs=43.6
Q ss_pred HHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 59 AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 59 a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
+.+.|. .||...-|..-+| .|.---.+|+.+|++++++-.. +..|.+.++.+||+..+...
T Consensus 174 Lk~~g~-~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 174 LKRSGL-GPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred hHHcCC-CCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 345554 4887744444445 7777777889999999987544 34678888999999987763
No 195
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.29 E-value=1.2e+02 Score=26.67 Aligned_cols=46 Identities=22% Similarity=0.161 Sum_probs=32.7
Q ss_pred HHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcC----CCcEEEEEeCCC
Q 023565 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENN----PDIKVYGVEPSE 211 (280)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~----p~~~vigVe~~~ 211 (280)
...+++++- +++|.|++. +...+.|+..++++.+ .++.|+|.+-..
T Consensus 192 ~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D~~~ 241 (305)
T cd06324 192 QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVNWSP 241 (305)
T ss_pred HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecCCCH
Confidence 455666553 578988864 5667789999999876 367888887543
No 196
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=60.10 E-value=42 Score=32.77 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=40.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
+++..+.|..|++.+..++.+|..++++-. ...+++..+.+|++.+.++.
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d~---~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFDT---RPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCeEEeccc
Confidence 488888999999999999999987444422 34578888899999977763
No 197
>PRK08226 short chain dehydrogenase; Provisional
Probab=60.00 E-value=76 Score=27.12 Aligned_cols=53 Identities=28% Similarity=0.201 Sum_probs=35.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
.+-+|+..+|.-|.++|......|.+++++-...........++..|.++..+
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~ 59 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAV 59 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEE
Confidence 35588888899999999999999998766643321122333444456666444
No 198
>PLN02527 aspartate carbamoyltransferase
Probab=59.82 E-value=43 Score=30.32 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=37.9
Q ss_pred EEEEeCCC---hHHHHHHHHHHHc-CCcEEEEeCCCC--CHHHHHHHHHCCCEEEEEC
Q 023565 71 TLIEVTSG---NTGVGLAFIAAAR-GYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (280)
Q Consensus 71 ~vv~~SsG---N~g~alA~~a~~~-G~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~~ 122 (280)
+|+-.+.+ |.+++++.+++++ |+.++++.|+.. ++.....++..|.++...+
T Consensus 153 kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 153 KVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred EEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 36655554 5789999998876 999999999874 4455566666788877665
No 199
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=59.74 E-value=68 Score=29.91 Aligned_cols=95 Identities=9% Similarity=0.179 Sum_probs=46.9
Q ss_pred CcEEEEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHH--HHHHHHHHHHHhCCCeEEc-CCC-CCCccHHHHHHhHHHHH
Q 023565 93 YNLIIVMPSTCSMERRIVLRALGA-EIILADSALRFE--EILEKGEEILKKTPDGYLL-RQF-ENPANPKIHYETTGPEI 167 (280)
Q Consensus 93 ~~~~ivvp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~-~~~-~~~~~~~~g~~t~~~Ei 167 (280)
.|..|+.-.+.-...-..++.+|. ++.++.+. ... ...++..+..++.+-.+.+ +.. .||..- ...-+.|+
T Consensus 8 ~p~~i~~G~g~~~~l~~~~~~~g~~~~livt~~-~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~---~v~~~~~~ 83 (383)
T PRK09860 8 IPSVNVIGADSLTDAMNMMADYGFTRTLIVTDN-MLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTE---NVAAGLKL 83 (383)
T ss_pred cCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCc-chhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHH---HHHHHHHH
Confidence 456666666555555566777885 55555432 221 2344555555554211211 111 133321 22334455
Q ss_pred HHhhCCCCCEEEEecCCchhHHHHHHHH
Q 023565 168 WQDSGGKVDAFISGIGTGGTVTGAGRFL 195 (280)
Q Consensus 168 ~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~ 195 (280)
.++. ++|. |+++|||+.+ =+++++
T Consensus 84 ~~~~--~~D~-IiaiGGGS~i-D~AK~i 107 (383)
T PRK09860 84 LKEN--NCDS-VISLGGGSPH-DCAKGI 107 (383)
T ss_pred HHHc--CCCE-EEEeCCchHH-HHHHHH
Confidence 5553 5775 6788877654 334443
No 200
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=59.59 E-value=34 Score=34.26 Aligned_cols=77 Identities=21% Similarity=0.231 Sum_probs=50.9
Q ss_pred chhhHHHHH-HHHHHHHcCCC------CCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC---------C-----
Q 023565 46 SVKDRIAYS-MIKDAEDKGLI------TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC---------S----- 104 (280)
Q Consensus 46 S~K~R~a~~-~l~~a~~~g~~------~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~---------~----- 104 (280)
+.-+|...- +...+.+.|.. .+-...|+..++|-.|.+.|+..++.|.+++||-.... +
T Consensus 280 ~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~ 359 (639)
T PRK12809 280 AVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLD 359 (639)
T ss_pred CcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCC
Confidence 455555543 33344444421 12134599999999999999999999999988854321 1
Q ss_pred ----HHHHHHHHHCCCEEEEEC
Q 023565 105 ----MERRIVLRALGAEIILAD 122 (280)
Q Consensus 105 ----~~~~~~l~~~Ga~v~~~~ 122 (280)
......++.+|.+++.-.
T Consensus 360 ~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 360 KTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred HHHHHHHHHHHHHCCeEEEcCC
Confidence 135677788999887543
No 201
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=59.49 E-value=43 Score=31.93 Aligned_cols=52 Identities=23% Similarity=0.174 Sum_probs=39.6
Q ss_pred EEEEeCC---ChHHHHHHHHHHHc-CCcEEEEeCCCC--CHHHHHHHHHCCCEEEEEC
Q 023565 71 TLIEVTS---GNTGVGLAFIAAAR-GYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (280)
Q Consensus 71 ~vv~~Ss---GN~g~alA~~a~~~-G~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~~ 122 (280)
+|+-.+. +|.+.+++.+++.+ |++++++.|+.. ++..+..++..|..+..++
T Consensus 243 kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 243 HIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred EEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 3666666 69999999996665 999999999875 4455666677788887765
No 202
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=59.49 E-value=74 Score=28.40 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=40.4
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC----HHHHHHHHHCCCEEEEECC
Q 023565 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS----MERRIVLRALGAEIILADS 123 (280)
Q Consensus 65 ~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~----~~~~~~l~~~Ga~v~~~~~ 123 (280)
+.+|. +|.|.+-+.+...+-..|...|.+..|++.++.| ......|...|-.+.++..
T Consensus 107 I~~g~-~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~D 168 (275)
T PRK08335 107 IDDGD-VIITHSFSSAVLEILKTAKRKGKRFKVILTESAPDYEGLALANELEFLGIEFEVITD 168 (275)
T ss_pred cCCCC-EEEEECCcHHHHHHHHHHHHcCCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEec
Confidence 34444 4888876656666666677888888888877665 2346667778988887763
No 203
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=59.42 E-value=1.3e+02 Score=26.64 Aligned_cols=55 Identities=24% Similarity=0.215 Sum_probs=38.4
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
.+.+.+|.+-+|....|..|.+++..|+.+|++++.+.+ ++.+...++.+|++-+
T Consensus 135 ~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~~ 189 (327)
T PRK10754 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQV 189 (327)
T ss_pred hcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEE
Confidence 455677777455556789999999999999998655543 3456666677887433
No 204
>PRK05826 pyruvate kinase; Provisional
Probab=59.34 E-value=1.7e+02 Score=28.26 Aligned_cols=125 Identities=13% Similarity=0.152 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCcEEEE-----------eCCCCCHHHHHHHHHCCCEEEEECCC---CCHH-HHHHHHHHHHHhCCCeEEc
Q 023565 83 GLAFIAAARGYNLIIV-----------MPSTCSMERRIVLRALGAEIILADSA---LRFE-EILEKGEEILKKTPDGYLL 147 (280)
Q Consensus 83 alA~~a~~~G~~~~iv-----------vp~~~~~~~~~~l~~~Ga~v~~~~~~---~~~~-~~~~~a~~~~~~~~~~~~~ 147 (280)
-+...|+..|.++.+- .|..+...-+...-..|++-+...+. +.|. ++.+.-.+.+++-...++.
T Consensus 263 ~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 342 (465)
T PRK05826 263 KIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSI 342 (465)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccch
Confidence 3455688899988874 23334444555566679987666532 2232 4444433333222111111
Q ss_pred ----CCCCCC-ccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCC
Q 023565 148 ----RQFENP-ANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212 (280)
Q Consensus 148 ----~~~~~~-~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~ 212 (280)
...... ..........+.++.++++ ..+.||+.+-+|.++-- +....|.++|+++.+...
T Consensus 343 ~~~~~~~~~~~~~~~~~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~----isk~RP~~pI~~~t~~~~ 407 (465)
T PRK05826 343 NLSKHRLDRQFDRIDEAIAMSAMYAANHLK-GVKAIVALTESGRTARL----ISRFRPGAPIFAVTRDEK 407 (465)
T ss_pred hhhhhhccccccchHHHHHHHHHHHHHhcC-CCCEEEEECCCcHHHHH----HHhhCCCCCEEEEcCCHH
Confidence 010111 1111344555667777772 26789999999987644 445579999999998654
No 205
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=59.34 E-value=98 Score=27.76 Aligned_cols=46 Identities=20% Similarity=0.220 Sum_probs=31.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
++...+.|+.|++++..++.+|.+++++-.. +.+....+.+|++.+
T Consensus 154 kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 154 NVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 4777777888888888888888766555333 344556667777643
No 206
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=59.33 E-value=53 Score=28.93 Aligned_cols=53 Identities=13% Similarity=-0.043 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 023565 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (280)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 101 (280)
-||..+.+..+.+.........+++..+.||-|..+|......|.+++.|.+.
T Consensus 18 g~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~ 70 (254)
T cd05313 18 GYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS 70 (254)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 35777777766543333333456999999999999999999988888877653
No 207
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=59.29 E-value=1.4e+02 Score=27.06 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=42.3
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH----HHHHHHHHCCCEEEEECC
Q 023565 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM----ERRIVLRALGAEIILADS 123 (280)
Q Consensus 65 ~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~----~~~~~l~~~Ga~v~~~~~ 123 (280)
+..|. +|.|.+-+.+...+-..|...|.+..|++.++.|. .....+...|-++..+..
T Consensus 118 i~~g~-~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~D 179 (310)
T PRK08535 118 IRDGD-VIMTHCNSSAALSVIKTAHEQGKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVD 179 (310)
T ss_pred cCCCC-EEEEeCCcHHHHHHHHHHHHCCCeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEeh
Confidence 34444 48888876666666667777888999999887763 345677788999988873
No 208
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=59.21 E-value=46 Score=35.10 Aligned_cols=97 Identities=18% Similarity=0.216 Sum_probs=0.0
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE-ECCCCCHHHHHHHHHHHHHhCCCeEE
Q 023565 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL-ADSALRFEEILEKGEEILKKTPDGYL 146 (280)
Q Consensus 68 g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~-~~~~~~~~~~~~~a~~~~~~~~~~~~ 146 (280)
|.+ |+..++|-.|.+.|+..++.|++++||=.. ...|..+.. ++.-.-..+.+++-.+..++. |.-+
T Consensus 306 gkk-VaVIGsGPAGLsaA~~Lar~G~~VtVfE~~----------~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~-Gv~f 373 (944)
T PRK12779 306 KPP-IAVVGSGPSGLINAYLLAVEGFPVTVFEAF----------HDLGGVLRYGIPEFRLPNQLIDDVVEKIKLL-GGRF 373 (944)
T ss_pred CCe-EEEECCCHHHHHHHHHHHHCCCeEEEEeeC----------CCCCceEEccCCCCcChHHHHHHHHHHHHhh-cCeE
Q ss_pred cCCCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCc
Q 023565 147 LRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTG 185 (280)
Q Consensus 147 ~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~G 185 (280)
. .+...|...+..++.++ ..|+||+++|++
T Consensus 374 ~------~n~~vG~dit~~~l~~~---~yDAV~LAtGA~ 403 (944)
T PRK12779 374 V------KNFVVGKTATLEDLKAA---GFWKIFVGTGAG 403 (944)
T ss_pred E------EeEEeccEEeHHHhccc---cCCEEEEeCCCC
No 209
>PRK08912 hypothetical protein; Provisional
Probab=59.06 E-value=1.5e+02 Score=27.27 Aligned_cols=78 Identities=15% Similarity=0.077 Sum_probs=45.0
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
+.|....|.+...... ...|. ..+. ..|+..+|+.++..++..+-. +-.-.|+++...-..-...++.+|++++.+
T Consensus 62 ~~G~~~lr~~ia~~~~-~~~g~~~~~~-~~i~~t~G~~~al~~~~~~~~-~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~ 138 (387)
T PRK08912 62 MMGLPELRQAVAAHYA-RFQGLDLDPE-TEVMVTSGATEALAAALLALV-EPGDEVVLFQPLYDAYLPLIRRAGGVPRLV 138 (387)
T ss_pred CCCcHHHHHHHHHHHH-HHhCCCCCCc-ccEEEeCCcHHHHHHHHHHhc-CCCCEEEEeCCCchhhHHHHHHcCCEEEEE
Confidence 3566666655443221 11232 2332 137777888888766665542 222356666555455566778999999887
Q ss_pred CC
Q 023565 122 DS 123 (280)
Q Consensus 122 ~~ 123 (280)
+.
T Consensus 139 ~~ 140 (387)
T PRK08912 139 RL 140 (387)
T ss_pred ec
Confidence 64
No 210
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=58.96 E-value=1.5e+02 Score=27.32 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=45.2
Q ss_pred CCCchhhHHHHHHHHHHHHcCC---CCCCCeEEEEeCCChHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 43 PCSSVKDRIAYSMIKDAEDKGL---ITPGKTTLIEVTSGNTGVGLAFIAAA-RGYNLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~---~~~g~~~vv~~SsGN~g~alA~~a~~-~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
+.|.-..|-+..-..... .|. +.+. ..|+..+++..+..++..+-. -|=...|++|.-.-..-....+.+|+++
T Consensus 63 ~~G~~~lr~aia~~~~~~-~~~~~~~~~~-~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~ 140 (393)
T TIGR03538 63 TKGLPELRQAIARWLERR-FDLPTGVDPE-RHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEP 140 (393)
T ss_pred CCCCHHHHHHHHHHHHHh-hCCcccCCCC-ceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeE
Confidence 467666675543222111 121 2332 237777788887776655432 3433457777644444455678899999
Q ss_pred EEECC
Q 023565 119 ILADS 123 (280)
Q Consensus 119 ~~~~~ 123 (280)
+.++-
T Consensus 141 ~~v~~ 145 (393)
T TIGR03538 141 YFLNC 145 (393)
T ss_pred EEeec
Confidence 98864
No 211
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=58.96 E-value=70 Score=28.32 Aligned_cols=53 Identities=26% Similarity=0.390 Sum_probs=35.4
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCC
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGA 116 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga 116 (280)
.+.+.++.+-+| ..+|..|.+++..|+..|.++++ +....+..+...++.+|+
T Consensus 159 ~~~~~~g~~vlI-~g~g~~g~~~~~la~~~G~~v~~-~~~~~~~~~~~~~~~~g~ 211 (306)
T cd08258 159 RSGIRPGDTVVV-FGPGPIGLLAAQVAKLQGATVVV-VGTEKDEVRLDVAKELGA 211 (306)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCEEEE-ECCCCCHHHHHHHHHhCC
Confidence 344566666555 45688899998999999988433 323334566777777776
No 212
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=58.86 E-value=1.4e+02 Score=26.98 Aligned_cols=78 Identities=9% Similarity=-0.051 Sum_probs=44.2
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCc---EEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTTLIEVTSGNTGVGLAFIAAARGYN---LIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~alA~~a~~~G~~---~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
|.|.-..|-+..-... ...|. ..++. .|+..+++..+.-++..+- .+-. -.|++|...-..-...++.+|+++
T Consensus 35 ~~G~~~lr~aia~~~~-~~~g~~~~~~~-~Iiit~Gs~~ai~~~~~~~-~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~ 111 (350)
T TIGR03537 35 ALGTKALREAISGWFE-RRFGVKLDPDA-QVLPSAGSKEAIFHFPLVF-IDPEEDRRRVIFGTPGYPVYERGALFAGGEP 111 (350)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCCCCCC-cEEEcCChHHHHHHHHHHH-cCCCCCCceEEEcCCCCcchHHHHHhcCCEE
Confidence 4676677755433221 12242 23321 3777777776665544332 2221 266676655556666778899999
Q ss_pred EEECC
Q 023565 119 ILADS 123 (280)
Q Consensus 119 ~~~~~ 123 (280)
+.++-
T Consensus 112 ~~v~~ 116 (350)
T TIGR03537 112 TAVKL 116 (350)
T ss_pred EEccc
Confidence 98864
No 213
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=58.83 E-value=85 Score=29.00 Aligned_cols=52 Identities=23% Similarity=0.327 Sum_probs=36.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
++..+||..|..++..+-..+-.-.|++|..+-......+..+|++++.++-
T Consensus 51 ~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~ 102 (379)
T PRK11658 51 AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDV 102 (379)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEec
Confidence 6667778777766665542333346778876666667778889999999874
No 214
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=58.80 E-value=47 Score=30.55 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=40.0
Q ss_pred EEEEeCC---ChHHHHHHHH-HHHcCCcEEEEeCCCC--CHHHHHHHHHCCCEEEEEC
Q 023565 71 TLIEVTS---GNTGVGLAFI-AAARGYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (280)
Q Consensus 71 ~vv~~Ss---GN~g~alA~~-a~~~G~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~~ 122 (280)
+|+-.+. +|.+.+++.. ++.+|+.++++.|+.. ++..++.++..|.++..++
T Consensus 161 kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 161 HIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred EEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 3666666 6889999976 5677999999999874 5555667777898888776
No 215
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=58.51 E-value=84 Score=25.63 Aligned_cols=53 Identities=25% Similarity=0.226 Sum_probs=37.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC-----CCHHHHHHHHHCCCEEEEECC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPST-----CSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~-----~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
-+|+...|..|..+|..-...+-.-++++... .....++.++..|++|.....
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~ 60 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQC 60 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE-
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeecc
Confidence 36777789999999998777776656666444 234578888999999987753
No 216
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=58.42 E-value=74 Score=26.88 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=28.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC 103 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~ 103 (280)
.++..++|.-|..-+......|-.++|+-|+..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 489999999999988888889999988887654
No 217
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=58.37 E-value=71 Score=28.30 Aligned_cols=54 Identities=22% Similarity=0.210 Sum_probs=38.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
+...++++.+-+| ...|..|.+++..|+..|++++++.+. ..+...++.+|++-
T Consensus 161 ~~~~~~~~~~vlV-~g~g~vg~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 214 (329)
T cd08298 161 KLAGLKPGQRLGL-YGFGASAHLALQIARYQGAEVFAFTRS---GEHQELARELGADW 214 (329)
T ss_pred HhhCCCCCCEEEE-ECCcHHHHHHHHHHHHCCCeEEEEcCC---hHHHHHHHHhCCcE
Confidence 4555677767455 567889999999999999876655444 35667778888743
No 218
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=58.34 E-value=84 Score=28.24 Aligned_cols=49 Identities=20% Similarity=0.271 Sum_probs=33.6
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 67 ~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
++.. ++...+|..|.+++..|+.+|.+.++++. .++.+...++.+|++.
T Consensus 175 ~~~~-vlI~g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~ 223 (350)
T cd08240 175 ADEP-VVIIGAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGADV 223 (350)
T ss_pred CCCE-EEEECCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCcE
Confidence 4545 55556788889988999999986555443 2356777777788753
No 219
>PRK08636 aspartate aminotransferase; Provisional
Probab=58.28 E-value=1.6e+02 Score=27.35 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=45.5
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
+.|..-.|.+....... ..|. ..+. ..|+..+++++|..++..+- ..-.-.|++++-+-..-...++..|++++.+
T Consensus 70 ~~G~~~lR~~ia~~l~~-~~~~~~~~~-~~I~it~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v 146 (403)
T PRK08636 70 SKGIYKLRLAICNWYKR-KYNVDLDPE-TEVVATMGSKEGYVHLVQAI-TNPGDVAIVPDPAYPIHSQAFILAGGNVHKM 146 (403)
T ss_pred CCCCHHHHHHHHHHHHH-HhCCCCCCC-CeEEECCChHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHHHhcCCEEEEE
Confidence 45766666554332221 1232 2332 13777888888877766643 2333466666655555666778899999887
Q ss_pred C
Q 023565 122 D 122 (280)
Q Consensus 122 ~ 122 (280)
+
T Consensus 147 ~ 147 (403)
T PRK08636 147 P 147 (403)
T ss_pred e
Confidence 5
No 220
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=58.24 E-value=99 Score=26.21 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=38.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|.-|.+++......|.+++++..... .......++..|.++..+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVA 62 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEE
Confidence 35688888899999999999999998776654321 2233455566788876554
No 221
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=58.09 E-value=1.2e+02 Score=26.69 Aligned_cols=55 Identities=29% Similarity=0.473 Sum_probs=36.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
+...++++..-+|...+|..|.+++..|+.+|.+++++.+. ..+...++.+|++-
T Consensus 136 ~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 190 (324)
T cd08244 136 DLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGG---PAKTALVRALGADV 190 (324)
T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHcCCCE
Confidence 34456666665555557889999999999999875444322 34555566677643
No 222
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=58.08 E-value=35 Score=25.86 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=49.6
Q ss_pred HHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccccCCCCCCcccCcccCCCCccccccccC
Q 023565 163 TGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDIL 242 (280)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~~~~~glg~~~~~~~~~~~~v 242 (280)
.+.++.+++ +.+.||+..-+|.++ ..+....|.++|+++.+...-.- . -.+-.|..|..+.....
T Consensus 7 aa~~~A~~~--~ak~Ivv~T~sG~ta----~~isk~RP~~pIiavt~~~~~~r--------~-l~l~~GV~p~~~~~~~~ 71 (117)
T PF02887_consen 7 AAVELAEDL--NAKAIVVFTESGRTA----RLISKYRPKVPIIAVTPNESVAR--------Q-LSLYWGVYPVLIEEFDK 71 (117)
T ss_dssp HHHHHHHHH--TESEEEEE-SSSHHH----HHHHHT-TSSEEEEEESSHHHHH--------H-GGGSTTEEEEECSSHSH
T ss_pred HHHHHHHhc--CCCEEEEECCCchHH----HHHHhhCCCCeEEEEcCcHHHHh--------h-hhcccceEEEEeccccc
Confidence 355777787 478999999999885 45556679999999998654210 0 01222333332221111
Q ss_pred CeEEEeCHHHHHHHHHHhhhcCCcc
Q 023565 243 DEVITVSHKIDLHLLHFCCCSSPTL 267 (280)
Q Consensus 243 d~~~~V~d~ea~~~~~~la~~eG~~ 267 (280)
+ .++.++.+...+...|.+
T Consensus 72 ~------~~~~~~~a~~~~~~~g~~ 90 (117)
T PF02887_consen 72 D------TEELIAEALEYAKERGLL 90 (117)
T ss_dssp S------HHHHHHHHHHHHHHTTSS
T ss_pred c------HHHHHHHHHHHHHHcCCC
Confidence 2 466777776666666664
No 223
>PRK14031 glutamate dehydrogenase; Provisional
Probab=57.97 E-value=82 Score=30.20 Aligned_cols=53 Identities=11% Similarity=-0.065 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 023565 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (280)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 101 (280)
-||..+.+..+.+..-......+|+..+.||-|..+|.....+|.++++|.+.
T Consensus 208 g~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~ 260 (444)
T PRK14031 208 GYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDS 260 (444)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 36777777766543323444466999999999999999999999999888873
No 224
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=57.92 E-value=1e+02 Score=25.90 Aligned_cols=53 Identities=23% Similarity=0.247 Sum_probs=36.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|.-|.++|......|..++++-.. ........++..+.++..+.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~ 58 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRS-EPSETQQQVEALGRRFLSLT 58 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCc-hHHHHHHHHHhcCCceEEEE
Confidence 355788888999999999999999987666532 23344555666776665544
No 225
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=57.88 E-value=1e+02 Score=28.83 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=73.8
Q ss_pred CCchhhHHHHHHHHHHH----HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 44 CSSVKDRIAYSMIKDAE----DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 44 tGS~K~R~a~~~l~~a~----~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
.|.+..-.|++.+.... ..|..-.| .+|-..+-||-|..+|..++.+|+++..+=|..... +....
T Consensus 88 pg~na~aVAE~~~~~lL~l~r~~g~~L~g-ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~---------~~~~~ 157 (378)
T PRK15438 88 PGCNAIAVVEYVFSSLLMLAERDGFSLHD-RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR---------GDEGD 157 (378)
T ss_pred CCcCchHHHHHHHHHHHHHhccCCCCcCC-CEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc---------ccccc
Confidence 45667777777665432 23332233 448888889999999999999999988875431100 11100
Q ss_pred EECCCCCHHHHHHHHHHHHHhCCCeEEc-CCCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhHH--HHHHHHH
Q 023565 120 LADSALRFEEILEKGEEILKKTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVT--GAGRFLK 196 (280)
Q Consensus 120 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~--Gi~~~~k 196 (280)
. .++ .++.++. +...+ -|....... .-+.-+..+.++++ +++.+++-+|-|+.+- .+..+++
T Consensus 158 ~----~~L-------~ell~~s-DiI~lh~PLt~~g~~-~T~~li~~~~l~~m--k~gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 158 F----RSL-------DELVQEA-DILTFHTPLFKDGPY-KTLHLADEKLIRSL--KPGAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred c----CCH-------HHHHhhC-CEEEEeCCCCCCccc-ccccccCHHHHhcC--CCCcEEEECCCchhcCHHHHHHHHH
Confidence 0 112 2233333 44443 333221110 12344566888888 4789999999998864 4445555
Q ss_pred h
Q 023565 197 E 197 (280)
Q Consensus 197 ~ 197 (280)
+
T Consensus 223 ~ 223 (378)
T PRK15438 223 E 223 (378)
T ss_pred h
Confidence 4
No 226
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=57.83 E-value=74 Score=23.48 Aligned_cols=49 Identities=24% Similarity=0.368 Sum_probs=36.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
++.++.|+.|+.++..-+..+.+++++-.+ +.+.+.++..|.+++.-+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d---~~~~~~~~~~~~~~i~gd~ 49 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRD---PERVEELREEGVEVIYGDA 49 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESS---HHHHHHHHHTTSEEEES-T
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECC---cHHHHHHHhcccccccccc
Confidence 466778899999999998877677776644 4678888888888777664
No 227
>PRK07109 short chain dehydrogenase; Provisional
Probab=57.83 E-value=74 Score=28.84 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=37.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|--|.++|......|.+++++..... .......++..|+++..+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~ 63 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVV 63 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEE
Confidence 35588888899999999999999998777654321 1223445667788876554
No 228
>PRK13243 glyoxylate reductase; Reviewed
Probab=57.57 E-value=83 Score=28.76 Aligned_cols=97 Identities=23% Similarity=0.214 Sum_probs=60.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ 149 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (280)
++|...+-|+-|+++|..++.+|++++++-+.. ... ....+|++. . +++ ++.++. +...++-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~-~~~---~~~~~~~~~---~---~l~-------ell~~a-DiV~l~l 212 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR-KPE---AEKELGAEY---R---PLE-------ELLRES-DFVSLHV 212 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC-Chh---hHHHcCCEe---c---CHH-------HHHhhC-CEEEEeC
Confidence 457888889999999999999999877664432 221 123445421 1 122 233333 4444433
Q ss_pred CCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhHHH
Q 023565 150 FENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTG 190 (280)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G 190 (280)
-.++ .-...+..|.++++ +++.+++-++.|+..--
T Consensus 213 P~t~----~T~~~i~~~~~~~m--k~ga~lIN~aRg~~vd~ 247 (333)
T PRK13243 213 PLTK----ETYHMINEERLKLM--KPTAILVNTARGKVVDT 247 (333)
T ss_pred CCCh----HHhhccCHHHHhcC--CCCeEEEECcCchhcCH
Confidence 2222 22344566888887 47899999999998743
No 229
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=57.37 E-value=1.4e+02 Score=26.55 Aligned_cols=53 Identities=26% Similarity=0.289 Sum_probs=37.2
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 63 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
..+.+|.+-+|. ++|..|.+++..|+.+|+..++++ ..++.+...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 345566664555 679999999999999998434444 33457777778899864
No 230
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=57.18 E-value=1.3e+02 Score=26.13 Aligned_cols=55 Identities=29% Similarity=0.376 Sum_probs=37.9
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 63 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+.+++|.+-+|...+|..|.++...|+..|.+++.+.+. +.+...++.+|++-+.
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 192 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEVV 192 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEE
Confidence 345666664555556999999999999999886554433 3566667778875443
No 231
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=56.90 E-value=67 Score=29.87 Aligned_cols=90 Identities=16% Similarity=0.223 Sum_probs=41.1
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHHH--HHHHHHHHHHhCCCeEEc-CCC-CCCccHHHHHHhHHHH
Q 023565 92 GYNLIIVMPSTCSMERRIVLRALGA-EIILADSALRFEE--ILEKGEEILKKTPDGYLL-RQF-ENPANPKIHYETTGPE 166 (280)
Q Consensus 92 G~~~~ivvp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~-~~~-~~~~~~~~g~~t~~~E 166 (280)
-.+..++.-.+.-...-..++.+|. ++.++.+. ...+ ..++..+..++.+-.+.+ +.. .||.. ....-+.+
T Consensus 6 ~~~~~i~~G~g~l~~l~~~~~~~g~~~~lvvtd~-~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~---~~v~~~~~ 81 (382)
T PRK10624 6 ILNETAYFGRGAIGALTDEVKRRGFKKALIVTDK-TLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTI---EVVKEGVE 81 (382)
T ss_pred cCCCeEEECcCHHHHHHHHHHhcCCCEEEEEeCc-chhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCH---HHHHHHHH
Confidence 3455566655544444455666774 54444322 1221 344444444444212221 121 13321 11222334
Q ss_pred HHHhhCCCCCEEEEecCCchhH
Q 023565 167 IWQDSGGKVDAFISGIGTGGTV 188 (280)
Q Consensus 167 i~~q~~~~~d~vv~~vG~Gg~~ 188 (280)
+.++. ++| +|+++|||+.+
T Consensus 82 ~~~~~--~~D-~IIaiGGGS~i 100 (382)
T PRK10624 82 VFKAS--GAD-YLIAIGGGSPQ 100 (382)
T ss_pred HHHhc--CCC-EEEEeCChHHH
Confidence 44443 577 57889887654
No 232
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=56.77 E-value=39 Score=31.16 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=39.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
.++..+||..|..++..+...+-.-.|++|..+-......++..|++++.++.
T Consensus 48 ~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~ 100 (375)
T PRK11706 48 KVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDI 100 (375)
T ss_pred eEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 47888888888766655433333457888887777778888999999999974
No 233
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=56.69 E-value=1e+02 Score=28.05 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=39.1
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
...+++|.+-+|. .+|..|.+++..|+.+|.+.++.+.. ++.|...++.+|++.++
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~i 236 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHVI 236 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEEe
Confidence 3455667664454 67899999999999999875444433 35677777888885444
No 234
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=56.68 E-value=40 Score=31.21 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHCCCEEEE--ECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCC-CccHHHHHHhHHHHHHHhhCCCCCEEE
Q 023565 103 CSMERRIVLRALGAEIIL--ADSALRFEEILEKGEEILKKTPDGYLLRQFEN-PANPKIHYETTGPEIWQDSGGKVDAFI 179 (280)
Q Consensus 103 ~~~~~~~~l~~~Ga~v~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~g~~t~~~Ei~~q~~~~~d~vv 179 (280)
+..+.-..++.+|++=.+ .|++-.--.....+++..+++ +.-|- -||+ ..++..|-.+-+.|+.+. .+.|. +
T Consensus 57 v~~Evg~dikn~gaKk~llvTDkni~~~~~~~~a~~~L~~~-~I~~~-vyD~v~~ePtv~s~~~alefak~--~~fDs-~ 131 (465)
T KOG3857|consen 57 VLAEVGDDIKNLGAKKTLLVTDKNIAKLGLVKVAQDSLEEN-GINVE-VYDKVQPEPTVGSVTAALEFAKK--KNFDS-F 131 (465)
T ss_pred hHHHHHHHHHhcCccceEEeeCCChhhcccHHHHHHHHHHc-CCceE-EecCccCCCchhhHHHHHHHHHh--cccce-E
Confidence 344555666777774322 232111113455666666665 32221 1221 111223556667787765 35664 5
Q ss_pred EecCCchh
Q 023565 180 SGIGTGGT 187 (280)
Q Consensus 180 ~~vG~Gg~ 187 (280)
+++|+|+.
T Consensus 132 vaiGGGSa 139 (465)
T KOG3857|consen 132 VAIGGGSA 139 (465)
T ss_pred EEEcCcch
Confidence 67777654
No 235
>PRK05993 short chain dehydrogenase; Provisional
Probab=56.48 E-value=1.3e+02 Score=26.01 Aligned_cols=52 Identities=25% Similarity=0.206 Sum_probs=38.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (280)
+.+|+..+|.-|.++|......|.+++++... +.++..++..|.+.+.+|-+
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl~ 57 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDYA 57 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccCC
Confidence 45788888999999999988899987776543 34555666677777777643
No 236
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=56.37 E-value=83 Score=28.21 Aligned_cols=51 Identities=27% Similarity=0.409 Sum_probs=36.0
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 66 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
.+|.+-+|. .+|..|.+++..|+.+|.+.++++ ..++.|....+.+|++-+
T Consensus 162 ~~g~~vlV~-g~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~ 212 (341)
T cd05281 162 VSGKSVLIT-GCGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVV 212 (341)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCccee
Confidence 456665564 468899999999999998544555 345677777788887543
No 237
>PRK12831 putative oxidoreductase; Provisional
Probab=56.24 E-value=53 Score=31.45 Aligned_cols=52 Identities=21% Similarity=0.151 Sum_probs=39.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC---C--CHHHHHHHHHCCCEEEEE
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST---C--SMERRIVLRALGAEIILA 121 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~---~--~~~~~~~l~~~Ga~v~~~ 121 (280)
+.|+...+||.|.-+|..+.++|.+++++.... . ....++.++..|.+++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~ 338 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLL 338 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 349999999999999999999999988887543 2 224445566778776644
No 238
>PRK06139 short chain dehydrogenase; Provisional
Probab=56.16 E-value=72 Score=28.97 Aligned_cols=53 Identities=26% Similarity=0.262 Sum_probs=36.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEE
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILA 121 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~ 121 (280)
.+-+|+..||--|+++|......|.+++++..... .......++.+|+++..+
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~ 61 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVV 61 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
Confidence 35578888899999999999999998776654321 122334566788877554
No 239
>PRK07681 aspartate aminotransferase; Provisional
Probab=56.06 E-value=1.7e+02 Score=27.05 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=33.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
.|+..+++..+..++..+- .+-.-.|++|.-.-+.-...++.+|++++.++-
T Consensus 95 ~I~it~G~~~al~~~~~~~-~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~ 146 (399)
T PRK07681 95 EVLLLMGSQDGLVHLPMVY-ANPGDIILVPDPGYTAYETGIQMAGATSYYMPL 146 (399)
T ss_pred eEEECCCcHHHHHHHHHHh-CCCCCEEEECCCCccchHHHHHhcCCEEEEEec
Confidence 3777777888776655432 232345666654444555667889999988864
No 240
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=55.93 E-value=1.2e+02 Score=28.28 Aligned_cols=94 Identities=11% Similarity=0.101 Sum_probs=39.0
Q ss_pred EEeCCCCCHHHHHHHHHCCCEEEEECCCCCHH-HHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHHhhCCCC
Q 023565 97 IVMPSTCSMERRIVLRALGAEIILADSALRFE-EILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKV 175 (280)
Q Consensus 97 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~ 175 (280)
++.-.+.-...-..++.+|-++.++.+....+ ...++..+..++.+-.+.+..-..+.++... ..-+.++.++ .++
T Consensus 4 i~fG~g~l~~l~~~~~~~g~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~-v~~~~~~~~~--~~~ 80 (386)
T cd08191 4 LLFGAGQRRQLPRLAARLGSRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSE-LCDAASAAAR--AGP 80 (386)
T ss_pred EEECcCHHHHHHHHHHHcCCeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHH-HHHHHHHHHh--cCC
Confidence 34444433333445566776665544322222 3444454444443211211111111122111 1112233443 357
Q ss_pred CEEEEecCCchhHHHHHHHH
Q 023565 176 DAFISGIGTGGTVTGAGRFL 195 (280)
Q Consensus 176 d~vv~~vG~Gg~~~Gi~~~~ 195 (280)
|. |+++|||+.+ =+++++
T Consensus 81 D~-IIaiGGGS~i-D~aK~i 98 (386)
T cd08191 81 DV-IIGLGGGSCI-DLAKIA 98 (386)
T ss_pred CE-EEEeCCchHH-HHHHHH
Confidence 75 7789877654 334433
No 241
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=55.87 E-value=74 Score=29.51 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=46.4
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHH-HHHHHHHHHHHhCCCeEEc-CCC-CCCccHHHHHHhHHHHH
Q 023565 92 GYNLIIVMPSTCSMERRIVLRALGA-EIILADSALRFE-EILEKGEEILKKTPDGYLL-RQF-ENPANPKIHYETTGPEI 167 (280)
Q Consensus 92 G~~~~ivvp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~-~~~-~~~~~~~~g~~t~~~Ei 167 (280)
-.|..|+.-.+.-...-..++.+|. ++.++.+..... ...++..+..++.+-.+.+ +.. .||.. ....++
T Consensus 4 ~~p~~i~~G~g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~------~~v~~~ 77 (377)
T cd08176 4 YLPPTNLFGAGAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTI------TNVKDG 77 (377)
T ss_pred cCCCeEEECcCHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCH------HHHHHH
Confidence 3466666666655555566777785 566564322222 2445555555544222222 111 13332 122334
Q ss_pred HHhhC-CCCCEEEEecCCchhHHHHHHHH
Q 023565 168 WQDSG-GKVDAFISGIGTGGTVTGAGRFL 195 (280)
Q Consensus 168 ~~q~~-~~~d~vv~~vG~Gg~~~Gi~~~~ 195 (280)
.++.. .++| +|+++|||+.+ =+++++
T Consensus 78 ~~~~~~~~~D-~IIavGGGS~i-D~aK~i 104 (377)
T cd08176 78 LAVFKKEGCD-FIISIGGGSPH-DCAKAI 104 (377)
T ss_pred HHHHHhcCCC-EEEEeCCcHHH-HHHHHH
Confidence 43332 2577 56788877653 334433
No 242
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=55.86 E-value=1.2e+02 Score=26.89 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=17.6
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCC
Q 023565 81 GVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALG 115 (280)
Q Consensus 81 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~G 115 (280)
...+-.+|+.+|+..+.+++++++..+++++....
T Consensus 136 ~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a 170 (265)
T COG0159 136 SDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAA 170 (265)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC
Confidence 33444555555555555555555555555544433
No 243
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=55.84 E-value=93 Score=28.91 Aligned_cols=111 Identities=18% Similarity=0.216 Sum_probs=54.7
Q ss_pred CcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHH--HHHHHHHHHHHhCCCeEE-cCCC-CCCccHHHHHHhHHHHHH
Q 023565 93 YNLIIVMPSTCSMERRIVLRALGAEIILADSALRFE--EILEKGEEILKKTPDGYL-LRQF-ENPANPKIHYETTGPEIW 168 (280)
Q Consensus 93 ~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~--~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~g~~t~~~Ei~ 168 (280)
.|..|+.-++.-...-..++.+|-++.++.+...+. ...+...+..++.+-.+. .+.. .||.. ....-+.+.+
T Consensus 6 ~p~~i~~G~g~~~~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~---~~v~~~~~~~ 82 (382)
T cd08187 6 NPTKIIFGKGTESELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRL---ETVREGIELC 82 (382)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCH---HHHHHHHHHH
Confidence 455666666665555566777777787664322222 224455555554421121 2121 13321 1122233444
Q ss_pred HhhCCCCCEEEEecCCchhHHHHHHHHHhc-----------------CCCcEEEEEeCC
Q 023565 169 QDSGGKVDAFISGIGTGGTVTGAGRFLKEN-----------------NPDIKVYGVEPS 210 (280)
Q Consensus 169 ~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~-----------------~p~~~vigVe~~ 210 (280)
++. ++|. |+++|||+.+ =+++++... .+..++|+|-..
T Consensus 83 ~~~--~~D~-IIaiGGGS~i-D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 83 KEE--KVDF-ILAVGGGSVI-DSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred HHc--CCCE-EEEeCChHHH-HHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 443 5775 7788877654 334433221 245678888653
No 244
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.81 E-value=1.2e+02 Score=25.43 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=37.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|.-|++++..-...|.+++++...+.+ ......++..|.++..+.
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVK 60 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 455888888999999999999999987765443322 223345666788776654
No 245
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=55.71 E-value=1.7e+02 Score=26.89 Aligned_cols=110 Identities=12% Similarity=0.057 Sum_probs=53.6
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
+.|....|-+..-... ...|. +.+.+ .|+..+++..+..++..+- +.-.-.|+++.-+-..-...++.+|++++.+
T Consensus 67 ~~G~~~lr~aia~~~~-~~~g~~~~~~~-~I~it~Gs~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v 143 (388)
T PRK07366 67 FHGTLDFREAAAQWYE-QRFGLAVDPET-EVLPLIGSQEGTAHLPLAV-LNPGDFALLLDPGYPSHAGGVYLAGGQIYPM 143 (388)
T ss_pred CCCCHHHHHHHHHHHH-HhhCCcCCCcC-eEEECCCcHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHHHhcCCEEEEE
Confidence 3566666654332211 12232 33322 3777777787776665542 2212234445444344456678899999988
Q ss_pred CCCC--CHHHHHHHHHHHHHhCCCeEEcCCCCCCcc
Q 023565 122 DSAL--RFEEILEKGEEILKKTPDGYLLRQFENPAN 155 (280)
Q Consensus 122 ~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (280)
+-.. .+..-.+...+........+|+....||..
T Consensus 144 ~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG 179 (388)
T PRK07366 144 PLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTT 179 (388)
T ss_pred ECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCC
Confidence 6421 121111222222222335677765555543
No 246
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=55.53 E-value=49 Score=28.06 Aligned_cols=100 Identities=19% Similarity=0.200 Sum_probs=51.4
Q ss_pred CCCccHHHHHHhHHHHHH----HhhC------CCCCEEEEecC-CchhHHHHH----HHHHhcCCCcEEEEEeCCCCccc
Q 023565 151 ENPANPKIHYETTGPEIW----QDSG------GKVDAFISGIG-TGGTVTGAG----RFLKENNPDIKVYGVEPSESAVL 215 (280)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~----~q~~------~~~d~vv~~vG-~Gg~~~Gi~----~~~k~~~p~~~vigVe~~~~~~~ 215 (280)
+.-.++..||.+.+.+++ +++. ..+|.+++..| +|||=+|++ ..+++.+|+..++.+-......
T Consensus 90 g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~~~- 168 (216)
T PF00091_consen 90 GSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPFSS- 168 (216)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-CGG-
T ss_pred cccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeecccccccc-
Confidence 344556568876544443 2221 35777777655 344444544 4557777887777666544421
Q ss_pred cCCCCCCcccCcccCCCCccccccccCCeEEEeCHHHHHHHHH
Q 023565 216 NGGQRGKHLIQGIGAGIIPSVLDIDILDEVITVSHKIDLHLLH 258 (280)
Q Consensus 216 ~~g~~~~~~~~glg~~~~~~~~~~~~vd~~~~V~d~ea~~~~~ 258 (280)
++...+.. .........++.|-++.++-+...+.+.
T Consensus 169 -e~~~~~~N------a~~~l~~l~~~~d~~i~~dN~~l~~~~~ 204 (216)
T PF00091_consen 169 -EGVVEPYN------ALLSLSELQEYADSVILFDNDALYKICK 204 (216)
T ss_dssp -GSHHHHHH------HHHHHHHHHHTSSEEEEEEHHHHHHHHH
T ss_pred -ccccccce------ehhHHHHHHHhCCEEEEEcHHHHHHHHh
Confidence 11100000 0001112356788888888766666554
No 247
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=55.34 E-value=79 Score=28.71 Aligned_cols=52 Identities=12% Similarity=0.087 Sum_probs=32.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (280)
|+..+++..+..++..+- ..-.-.|+++...-.......+..|++++.++..
T Consensus 79 i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 130 (351)
T PRK14807 79 IFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK 130 (351)
T ss_pred EEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC
Confidence 676776677666555443 2322345555544445566778899999998743
No 248
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=55.32 E-value=1.2e+02 Score=28.42 Aligned_cols=97 Identities=22% Similarity=0.254 Sum_probs=50.2
Q ss_pred CcEEEEeCCCCCHHHHHHHHHCCC-EE-EEECCCCCHHHHHHHHHHHHHhCCCeEEcCCC--CCCccHHHHHHhHHHHHH
Q 023565 93 YNLIIVMPSTCSMERRIVLRALGA-EI-ILADSALRFEEILEKGEEILKKTPDGYLLRQF--ENPANPKIHYETTGPEIW 168 (280)
Q Consensus 93 ~~~~ivvp~~~~~~~~~~l~~~Ga-~v-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~g~~t~~~Ei~ 168 (280)
++..++.-.+........++.+|. ++ +.+++...-....+...+..++.+-.+.+... .||. ..-..-+.|.+
T Consensus 6 ~p~~i~fG~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~---~~~v~~~~~~~ 82 (377)
T COG1454 6 LPTEILFGRGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPT---IETVEAGAEVA 82 (377)
T ss_pred cCceEEecCChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCC---HHHHHHHHHHH
Confidence 355566666666666666676664 33 33343211113344555555555212323222 2333 23455677877
Q ss_pred HhhCCCCCEEEEecCCchhHHHHHHHHH
Q 023565 169 QDSGGKVDAFISGIGTGGTVTGAGRFLK 196 (280)
Q Consensus 169 ~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k 196 (280)
++. ++|. |+++|||+.+ -+++++.
T Consensus 83 ~~~--~~D~-iIalGGGS~~-D~AK~i~ 106 (377)
T COG1454 83 REF--GPDT-IIALGGGSVI-DAAKAIA 106 (377)
T ss_pred Hhc--CCCE-EEEeCCccHH-HHHHHHH
Confidence 775 5776 5678877644 5555554
No 249
>PRK12937 short chain dehydrogenase; Provisional
Probab=55.30 E-value=1.2e+02 Score=25.28 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=38.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|.-|.++|..-...|.+++++.....+ ......++.++.++..+.
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQ 61 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 355888888999999999999999987766543321 223445566788777664
No 250
>PLN02702 L-idonate 5-dehydrogenase
Probab=55.29 E-value=85 Score=28.50 Aligned_cols=57 Identities=28% Similarity=0.366 Sum_probs=40.7
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+...+.+|.+-+|. ..|.-|.++...|+.+|.+.++++.. ++.|...++.+|+....
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 34445666664554 67889999999999999886555544 46777788888986554
No 251
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=55.22 E-value=77 Score=28.72 Aligned_cols=51 Identities=24% Similarity=0.235 Sum_probs=37.6
Q ss_pred EEE-eCCChHHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHH----HHCCCEEEEEC
Q 023565 72 LIE-VTSGNTGVGLAFIAAARGYNLIIVMPSTCSM--ERRIVL----RALGAEIILAD 122 (280)
Q Consensus 72 vv~-~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~l----~~~Ga~v~~~~ 122 (280)
++- .-+.|.+.++-.+|+++|+.++++.|+...+ .-+... +.-|+++.++.
T Consensus 156 ~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~ 213 (310)
T COG0078 156 LAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTE 213 (310)
T ss_pred EEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEec
Confidence 443 3347899999999999999999999997533 223322 34588998886
No 252
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.81 E-value=1.3e+02 Score=27.54 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=20.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~ 102 (280)
+|+..|.--|.++|.-|+..|-.++++..+.
T Consensus 37 ~itggS~glgl~la~e~~~~ga~Vti~ar~~ 67 (331)
T KOG1210|consen 37 LITGGSSGLGLALALECKREGADVTITARSG 67 (331)
T ss_pred EEecCcchhhHHHHHHHHHccCceEEEeccH
Confidence 4455555556666777888888888877553
No 253
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=54.78 E-value=42 Score=31.04 Aligned_cols=52 Identities=29% Similarity=0.295 Sum_probs=35.5
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 66 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
++|.+ |+...+|..|.+++..|+.+|.+++++.+. ++.+...++.+|++.++
T Consensus 177 ~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 177 ESGKR-LGVNGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSFL 228 (375)
T ss_pred CCCCE-EEEEcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEEE
Confidence 45655 555667899999999999999875444332 23446666788986544
No 254
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=54.66 E-value=77 Score=22.69 Aligned_cols=77 Identities=10% Similarity=0.094 Sum_probs=49.3
Q ss_pred CCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHH--HHHHcCCcEEEEeCCCCCHHHHHHHHHC-CCEEEE
Q 023565 44 CSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAF--IAAARGYNLIIVMPSTCSMERRIVLRAL-GAEIIL 120 (280)
Q Consensus 44 tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~--~a~~~G~~~~ivvp~~~~~~~~~~l~~~-Ga~v~~ 120 (280)
.|......+..+..+...... ...++.+++-++.-+++. .|.+.+.|..++- ...+......++.+ ..+|+.
T Consensus 4 ~G~dRyeTs~~va~~~~~~~~----~~~v~ia~g~~~~Dalsa~~~a~~~~~PIll~~-~~l~~~~~~~l~~~~~~~v~i 78 (92)
T PF04122_consen 4 SGADRYETSAKVAKKFYPDNK----SDKVYIASGDNFADALSASPLAAKNNAPILLVN-NSLPSSVKAFLKSLNIKKVYI 78 (92)
T ss_pred CCCCHHHHHHHHHHHhcccCC----CCEEEEEeCcchhhhhhhHHHHHhcCCeEEEEC-CCCCHHHHHHHHHcCCCEEEE
Confidence 344444555666655332221 344777888777666665 4566777776666 77788888888877 557888
Q ss_pred ECCCC
Q 023565 121 ADSAL 125 (280)
Q Consensus 121 ~~~~~ 125 (280)
+++..
T Consensus 79 iGg~~ 83 (92)
T PF04122_consen 79 IGGEG 83 (92)
T ss_pred ECCCC
Confidence 87654
No 255
>PRK06182 short chain dehydrogenase; Validated
Probab=54.61 E-value=1.4e+02 Score=25.69 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=38.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (280)
+-+|+.++|.-|.++|......|.+++++... ..+++.+...+.+++.+|-+
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~ 56 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT 56 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC
Confidence 55888888999999999998899988776543 34455555567777777743
No 256
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=54.43 E-value=1.4e+02 Score=25.74 Aligned_cols=120 Identities=18% Similarity=0.127 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHC---CCEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEcCCCCCCccH
Q 023565 81 GVGLAFIAAARGYNLIIVMPSTCSMERRIVLRAL---GAEIILADSALRFEEILEKGEEILKKTP-DGYLLRQFENPANP 156 (280)
Q Consensus 81 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~---Ga~v~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~ 156 (280)
|.+.|.+.+.+|+++.++-++..+...+..+..+ |.+|....+.... +...+...+.+ ....+..|.+-...
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r----~~l~~~L~~~G~~v~~~~~Y~~~~~~ 161 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGR----EVLEEKLEERGAEVREVEVYRTEPPP 161 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCch----HHHHHHHHhCCCEEEEEeeeeecCCC
Confidence 3678888999999988877777777888888877 6777666543221 22222233331 23344445433221
Q ss_pred HHHHH-hHHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCC----CcEEEEEeCCC
Q 023565 157 KIHYE-TTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNP----DIKVYGVEPSE 211 (280)
Q Consensus 157 ~~g~~-t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p----~~~vigVe~~~ 211 (280)
+. ..-.+++ + ...+|+|+...+ .+.-.+...+...++ +.+++.+=|.-
T Consensus 162 ---~~~~~~~~~~-~-~~~~d~v~ftS~--~~v~~~~~~~~~~~~~~~~~~~v~~IG~~T 214 (248)
T COG1587 162 ---LDEATLIELL-K-LGEVDAVVFTSS--SAVRALLALAPESGIEFLERKRVASIGPRT 214 (248)
T ss_pred ---ccHHHHHHHH-H-hCCCCEEEEeCH--HHHHHHHHHccccchhHhhCceEEEecHHH
Confidence 22 1111122 2 257899988764 455555555555443 35565555433
No 257
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.43 E-value=1.1e+02 Score=27.20 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=37.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|.-|.++|..-...|.+++++-.... .......++..|.+++.+.
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 68 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVA 68 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEe
Confidence 35588888899999999998889988666532221 1233455677788886665
No 258
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=54.36 E-value=87 Score=28.38 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=34.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (280)
|+..+++..+..++..+- ..-.-.|++|...-..-....+.+|++++.++-.
T Consensus 84 I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~ 135 (356)
T PRK04870 84 VLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT 135 (356)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCC
Confidence 777776777666555432 2323456666655556677788999999998743
No 259
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=54.33 E-value=1.5e+02 Score=25.77 Aligned_cols=56 Identities=29% Similarity=0.340 Sum_probs=37.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
+...+.++.+-+|...+|..|.+++..++.+|.+++++... +.+...++.+|++.+
T Consensus 133 ~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 188 (325)
T TIGR02824 133 QRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGS---DEKCAACEALGADIA 188 (325)
T ss_pred HhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCcEE
Confidence 44566777775666657899999999999999876554432 344555566776443
No 260
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=54.28 E-value=1.7e+02 Score=26.43 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=19.7
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhc-CCCcEEEEEeCC
Q 023565 174 KVDAFISGIGTGGTVTGAGRFLKEN-NPDIKVYGVEPS 210 (280)
Q Consensus 174 ~~d~vv~~vG~Gg~~~Gi~~~~k~~-~p~~~vigVe~~ 210 (280)
++|. |+++|||..+ =++++.... .+..++|.|-+.
T Consensus 78 ~~d~-IIaiGGGs~~-D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 78 EVDA-VIAVGGGSTL-DTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred CcCE-EEEeCCchHH-HHHHHHHHHhcCCCCEEEEeCC
Confidence 4665 6778866543 444444332 235677777654
No 261
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=54.16 E-value=1.2e+02 Score=26.59 Aligned_cols=53 Identities=26% Similarity=0.308 Sum_probs=34.7
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (280)
.+.+.+|.+-+|...+|..|.+++..|+.+|.+.+++.+. ..+...++.+|++
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 185 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRR---DEQVEELKALGAD 185 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC---hHHHHHHHhcCCC
Confidence 3445666664455556888999999999998886555433 2455556667763
No 262
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=54.13 E-value=1.6e+02 Score=26.19 Aligned_cols=53 Identities=36% Similarity=0.513 Sum_probs=36.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (280)
+...+.+|.+-+|. .+|..|.+++..|+.+|++++++.. ++++...++.+|++
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~~ 205 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGAD 205 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCCC
Confidence 34456677664554 5688899999999999988665533 35666777777764
No 263
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=53.99 E-value=1.8e+02 Score=26.84 Aligned_cols=88 Identities=16% Similarity=0.276 Sum_probs=39.0
Q ss_pred cEEEEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHHH--HHHHHHHHHHhCCCeEE-cCCC-CCCccHHHHHHhHHHHHH
Q 023565 94 NLIIVMPSTCSMERRIVLRALGA-EIILADSALRFEE--ILEKGEEILKKTPDGYL-LRQF-ENPANPKIHYETTGPEIW 168 (280)
Q Consensus 94 ~~~ivvp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~~--~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~g~~t~~~Ei~ 168 (280)
|..++.-.+.-...-..++.+|. ++.++.+.. ..+ ..++..+..++.+-.+. .+.. .||.. ....-+.|.+
T Consensus 4 p~~i~~G~g~l~~l~~~l~~~g~~~~lvvt~~~-~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~---~~v~~~~~~~ 79 (374)
T cd08189 4 KPKLFVGSGSLAQLPAAISQLGVKKVLIVTDKG-LVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTI---ENVEAGLALY 79 (374)
T ss_pred CceEEECcCHHHHHHHHHHhcCCCeEEEEeCcc-hhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCH---HHHHHHHHHH
Confidence 34455544444444455666774 555554321 221 34445555544421222 2222 12221 1122233444
Q ss_pred HhhCCCCCEEEEecCCchhH
Q 023565 169 QDSGGKVDAFISGIGTGGTV 188 (280)
Q Consensus 169 ~q~~~~~d~vv~~vG~Gg~~ 188 (280)
++. ++| +|+++|||+.+
T Consensus 80 ~~~--~~d-~IIaiGGGS~~ 96 (374)
T cd08189 80 REN--GCD-AILAVGGGSVI 96 (374)
T ss_pred Hhc--CCC-EEEEeCCccHH
Confidence 443 567 57788887654
No 264
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=53.95 E-value=1e+02 Score=28.62 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=37.1
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (280)
.++..+||..|..++..+...+-.-.|++|..+-......+...|++++.++.+
T Consensus 48 ~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 48 KALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 477778777776655544323333567778777666777778899999999753
No 265
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=53.94 E-value=1.6e+02 Score=26.80 Aligned_cols=54 Identities=24% Similarity=0.366 Sum_probs=38.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (280)
+...+.+|.+-+| .++|..|.+++..|+.+|.+.++++.. ++.+...++.+|++
T Consensus 177 ~~~~~~~g~~vlI-~g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAV-FGLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 3445667777455 467999999999999999875555432 45677777888884
No 266
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=53.81 E-value=1.2e+02 Score=26.41 Aligned_cols=93 Identities=10% Similarity=0.103 Sum_probs=46.4
Q ss_pred HHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH-HHHhCCCeE---EcCCCCCCc
Q 023565 81 GVGLAFIAAAR--GYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEE-ILKKTPDGY---LLRQFENPA 154 (280)
Q Consensus 81 g~alA~~a~~~--G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~-~~~~~~~~~---~~~~~~~~~ 154 (280)
|..+.++++.+ |.+..-+-..+.-...++.....|-+|.++++. .+..+.+.+ +.++. +.- +-++|.+
T Consensus 69 G~gvv~~~~~~~~~~~~~Rv~G~dl~~~ll~~~~~~~~~v~llG~~---~~v~~~a~~~l~~~y-~l~i~g~~~Gyf~-- 142 (243)
T PRK03692 69 GISVVRSIRKKYPQAQVSRVAGADLWEALMARAGKEGTPVFLVGGK---PEVLAQTEAKLRTQW-NVNIVGSQDGYFT-- 142 (243)
T ss_pred CHHHHHHHHHhcCCCCCCeeChHHHHHHHHHHHHhcCCeEEEECCC---HHHHHHHHHHHHHHh-CCEEEEEeCCCCC--
Confidence 35677777666 433111111111133444455678899999864 333344333 33333 322 2233333
Q ss_pred cHHHHHHhHHHHHHHhhC-CCCCEEEEecCCc
Q 023565 155 NPKIHYETTGPEIWQDSG-GKVDAFISGIGTG 185 (280)
Q Consensus 155 ~~~~g~~t~~~Ei~~q~~-~~~d~vv~~vG~G 185 (280)
.. -. .++.+++. ..+|.|+|+.|.-
T Consensus 143 -~~-e~----~~i~~~I~~s~~dil~VglG~P 168 (243)
T PRK03692 143 -PE-QR----QALFERIHASGAKIVTVAMGSP 168 (243)
T ss_pred -HH-HH----HHHHHHHHhcCCCEEEEECCCc
Confidence 21 11 23444442 3599999999874
No 267
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=53.80 E-value=1e+02 Score=26.81 Aligned_cols=51 Identities=33% Similarity=0.470 Sum_probs=36.5
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 023565 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (280)
Q Consensus 63 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (280)
+.+.+|.+-+|...+|..|.+++..|+..|.+++++.+. .+...++.+|++
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~ 189 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGAD 189 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCC
Confidence 345666664555556999999999999999986665532 566667778874
No 268
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=53.72 E-value=98 Score=28.93 Aligned_cols=55 Identities=24% Similarity=0.312 Sum_probs=47.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (280)
+..+..+||..+..+|..|-..|=.-.|++|.-+-......+-..||+.+++|-+
T Consensus 50 k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid 104 (374)
T COG0399 50 KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDID 104 (374)
T ss_pred CeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecC
Confidence 4588999999998888886557777789999999999999999999999999853
No 269
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=53.70 E-value=1.4e+02 Score=27.52 Aligned_cols=79 Identities=10% Similarity=0.036 Sum_probs=47.0
Q ss_pred CCCCchhhHHHHHHHHHHHHcCC--CCCCCeEEEEeCCChHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 42 EPCSSVKDRIAYSMIKDAEDKGL--ITPGKTTLIEVTSGNTGVGLAFIAAA-RGYNLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 42 ~ptGS~K~R~a~~~l~~a~~~g~--~~~g~~~vv~~SsGN~g~alA~~a~~-~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
.+.|....|-+..... ...+. +.++...++..+|+.+|..++..+-. ..-.-.|++|.-.-+.-...++.+|+++
T Consensus 67 ~~~G~~~lR~aia~~~--~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~ 144 (396)
T PRK09257 67 PIEGLAAYRQAVQELL--FGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEV 144 (396)
T ss_pred CCCCCHHHHHHHHHHh--cCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcE
Confidence 3478777776544322 22221 13322113777778888877764332 1222356677666666677888999999
Q ss_pred EEEC
Q 023565 119 ILAD 122 (280)
Q Consensus 119 ~~~~ 122 (280)
+.++
T Consensus 145 v~v~ 148 (396)
T PRK09257 145 KTYP 148 (396)
T ss_pred EEEe
Confidence 9886
No 270
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=53.67 E-value=56 Score=29.76 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=32.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYN-LIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~-~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
|+...++..+..++..+- .+-. -.|+++...-..-...++.+|++++.++-
T Consensus 77 I~~~~Gs~e~i~~~~~~~-~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~ 128 (351)
T PRK01688 77 VLVSRGADEGIELLIRAF-CEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPT 128 (351)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeec
Confidence 777777777776666543 2221 34555544434455667889999998864
No 271
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=53.47 E-value=1.2e+02 Score=24.73 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=41.3
Q ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCch
Q 023565 111 LRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186 (280)
Q Consensus 111 l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg 186 (280)
+..+|.+++.-+. .+..+++..+.+........+++.+.|.|.... .+..++++++. ..|.+++|.-.||
T Consensus 61 ~~~~~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~----~~i~~l~~~~~-~~~~vi~p~~~GG 130 (195)
T TIGR03552 61 ARNLGAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMADLPLLTP----RELKRLLAAAT-EGDVVIAPDRGGG 130 (195)
T ss_pred HHhcCCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCH----HHHHHHHHhcc-cCCEEEEecCCCC
Confidence 4556776654433 256677777765544332467777888887642 22335555553 4578889886664
No 272
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=53.44 E-value=1.7e+02 Score=26.35 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=42.5
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC----HHHHHHHHHCCCEEEEECC
Q 023565 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS----MERRIVLRALGAEIILADS 123 (280)
Q Consensus 65 ~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~----~~~~~~l~~~Ga~v~~~~~ 123 (280)
+..|. +|.|.+-+.+...+-..|...|.+..|++.++.| ......+...|-++.++..
T Consensus 113 i~~g~-~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~D 174 (301)
T TIGR00511 113 IRDGD-VVMTHCNSEAALSVIKTAFEQGKDIEVIATETRPRKQGHITAKELRDYGIPVTLIVD 174 (301)
T ss_pred cCCCC-EEEEECCcHHHHHHHHHHHHcCCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEeh
Confidence 33444 4888887766666667777788889999988766 2346777888999988863
No 273
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=53.19 E-value=21 Score=34.44 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=32.3
Q ss_pred eCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 75 VTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 75 ~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
.|||-+|.++|.++...|-++++|.-+...+ .-.|.+++.+..
T Consensus 279 ~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~------~p~~v~~i~V~t 321 (475)
T PRK13982 279 RSSGKQGFAIAAAAAAAGAEVTLISGPVDLA------DPQGVKVIHVES 321 (475)
T ss_pred CCchHHHHHHHHHHHHCCCcEEEEeCCcCCC------CCCCceEEEecC
Confidence 3679999999999999999999998443210 225677777764
No 274
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=53.12 E-value=1.4e+02 Score=28.07 Aligned_cols=129 Identities=15% Similarity=0.142 Sum_probs=70.8
Q ss_pred CCchhhHHHHHHHHHH----HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 44 CSSVKDRIAYSMIKDA----EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 44 tGS~K~R~a~~~l~~a----~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
.|.+..-.|++.+... +..|..-.| ++|-.-+-||-|+.+|..++.+|+++.++=|..... . +. +.
T Consensus 88 pg~na~aVAE~v~~~lL~l~r~~g~~l~g-ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-------~-~~-~~ 157 (381)
T PRK00257 88 PGCNARGVVDYVLGSLLTLAEREGVDLAE-RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-------E-GD-GD 157 (381)
T ss_pred CCcChHHHHHHHHHHHHHHhcccCCCcCc-CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-------c-cC-cc
Confidence 4556666676655433 233332233 447788889999999999999999888775432100 0 10 00
Q ss_pred EECCCCCHHHHHHHHHHHHHhCCCeEEc-CCCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhHHH--HHHHHH
Q 023565 120 LADSALRFEEILEKGEEILKKTPDGYLL-RQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTG--AGRFLK 196 (280)
Q Consensus 120 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G--i~~~~k 196 (280)
.+ + ..++.++. +...+ -|.. +.....=+.-+..|.++++ +++.+++-++.|+.+-- +..+++
T Consensus 158 ~~----~-------l~ell~~a-DiV~lh~Plt-~~g~~~T~~li~~~~l~~m--k~gailIN~aRG~vVde~AL~~aL~ 222 (381)
T PRK00257 158 FV----S-------LERILEEC-DVISLHTPLT-KEGEHPTRHLLDEAFLASL--RPGAWLINASRGAVVDNQALREALL 222 (381)
T ss_pred cc----C-------HHHHHhhC-CEEEEeCcCC-CCccccccccCCHHHHhcC--CCCeEEEECCCCcccCHHHHHHHHH
Confidence 00 1 22333433 33333 2332 2100011344566788887 46899999999988644 334444
Q ss_pred h
Q 023565 197 E 197 (280)
Q Consensus 197 ~ 197 (280)
.
T Consensus 223 ~ 223 (381)
T PRK00257 223 S 223 (381)
T ss_pred h
Confidence 3
No 275
>PRK06836 aspartate aminotransferase; Provisional
Probab=52.92 E-value=1.8e+02 Score=26.83 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=32.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
|+..++++.+..++..+- ..-.-.|+++...-..-...++.+|++++.++.
T Consensus 99 i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~ 149 (394)
T PRK06836 99 IVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPT 149 (394)
T ss_pred EEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEec
Confidence 777777777766655432 232345566654444455667889999999874
No 276
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=52.88 E-value=1.1e+02 Score=26.98 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=37.8
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 63 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
..+.++.+-+|. ..|..|.+++..|+..|++++++.+ +..+...++.+|++.++.
T Consensus 158 ~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~~ 212 (330)
T cd08245 158 AGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITR---SPDKRELARKLGADEVVD 212 (330)
T ss_pred hCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHhCCcEEec
Confidence 445666664555 5677999999999999998665543 345667777788755543
No 277
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=52.87 E-value=63 Score=29.43 Aligned_cols=51 Identities=16% Similarity=0.035 Sum_probs=35.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
.|+..+|+..+..++..+-.-| . .|+++.-+-..-...++.+|++++.++.
T Consensus 76 ~I~it~G~~~~i~~~~~~l~~g-~-~vlv~~P~y~~~~~~~~~~g~~~~~v~~ 126 (360)
T PRK07392 76 WILPGNGAAELLTWAGRELAQL-R-AVYLITPAFGDYRRALRAFGATVKELPL 126 (360)
T ss_pred hEEECCCHHHHHHHHHHHhCCC-C-eEEEECCCcHHHHHHHHHcCCeEEEEec
Confidence 3777777888777665542223 3 5566665656667888889999998864
No 278
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=52.82 E-value=63 Score=26.13 Aligned_cols=50 Identities=30% Similarity=0.330 Sum_probs=40.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
.++..++||-|...+..+..+|.+.+++- ..+.+++..+..++..+.++.
T Consensus 22 ~vvv~G~G~vg~gA~~~~~~lGa~v~~~d---~~~~~~~~~~~~~~~~i~~~~ 71 (168)
T PF01262_consen 22 KVVVTGAGRVGQGAAEIAKGLGAEVVVPD---ERPERLRQLESLGAYFIEVDY 71 (168)
T ss_dssp EEEEESTSHHHHHHHHHHHHTT-EEEEEE---SSHHHHHHHHHTTTEESEETT
T ss_pred EEEEECCCHHHHHHHHHHhHCCCEEEecc---CCHHHHHhhhcccCceEEEcc
Confidence 48888999999999999999999866653 345677888899998888853
No 279
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=52.75 E-value=87 Score=28.76 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=38.0
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (280)
+.+.+++|.+ ++...+|.-|.+++..|+.+|.+-++++.. ++.+++.++.+|++
T Consensus 184 ~~~~~~~g~~-VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~a~~lGa~ 237 (373)
T cd08299 184 NTAKVTPGST-CAVFGLGGVGLSAIMGCKAAGASRIIAVDI--NKDKFAKAKELGAT 237 (373)
T ss_pred hccCCCCCCE-EEEECCCHHHHHHHHHHHHcCCCeEEEEcC--CHHHHHHHHHcCCc
Confidence 4455677766 444477999999999999999844444432 34677777888984
No 280
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=52.48 E-value=84 Score=28.77 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=47.7
Q ss_pred EEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCe-EEcCCC-CCCccHHHHHHhHHHHHHHhhC-C
Q 023565 97 IVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDG-YLLRQF-ENPANPKIHYETTGPEIWQDSG-G 173 (280)
Q Consensus 97 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~~~~~~~~g~~t~~~Ei~~q~~-~ 173 (280)
++.-++.-...-..++.+|.++.++.+...++...++..+..++. +. +....| .+|. . ....++.++.. .
T Consensus 4 i~~G~g~~~~l~~~~~~~g~~~liv~~~~~~~~~~~~v~~~l~~~-~i~~~~~~~~~~p~-~-----~~v~~~~~~~~~~ 76 (349)
T cd08550 4 YVCGDNAIKEIAAILSTFGSKVAVVGGKTVLKKSRPRFEAALAKS-IIVVDVIVFGGECS-T-----EEVVKALCGAEEQ 76 (349)
T ss_pred EEECcCHHHHHHHHHHHcCCeEEEEEChHHHHHHHHHHHHHHHhc-CCeeEEEEcCCCCC-H-----HHHHHHHHHHHhc
Confidence 334344333334555667766655543223334444555555543 21 111112 2332 1 12333443332 2
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCC
Q 023565 174 KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPS 210 (280)
Q Consensus 174 ~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~ 210 (280)
++| +|+++|||. ..=+++++.... ..++|.|-..
T Consensus 77 ~~d-~IIavGGGs-~~D~aK~ia~~~-~~p~i~VPTt 110 (349)
T cd08550 77 EAD-VIIGVGGGK-TLDTAKAVADRL-DKPIVIVPTI 110 (349)
T ss_pred CCC-EEEEecCcH-HHHHHHHHHHHc-CCCEEEeCCc
Confidence 466 577888765 445555554332 3466666553
No 281
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=52.47 E-value=1.2e+02 Score=25.40 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=37.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHCCCEEEEECC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILADS 123 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~~~ 123 (280)
.+-+|+..+|--|.++|......|..++++..... .+.....++..|.++..+..
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 63 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQA 63 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEEC
Confidence 35588888899999999988888988766543221 11223455667878866653
No 282
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=52.40 E-value=1.7e+02 Score=26.01 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=38.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAA-RGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~-~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
+...+++|.+-+|.. +|-.|.+++..|+. .|.+++++. .++.+.+.++.+|++.++.
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~---~~~~~~~~~~~~g~~~v~~ 213 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVD---INDDKLALAKEVGADLTIN 213 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEe---CChHHHHHHHHcCCcEEec
Confidence 344567777755555 78889998888887 488755543 3346777778888865543
No 283
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=52.38 E-value=1.2e+02 Score=25.41 Aligned_cols=33 Identities=24% Similarity=0.247 Sum_probs=27.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 101 (280)
.+-+|+.++|.-|.+++......|.+++++...
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 355788888999999999999999988877654
No 284
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=52.32 E-value=94 Score=29.73 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=54.7
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-CH-HHHHHHHHHHHHhCCCeEEc
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYN-LIIVMPSTCSMERRIVLRALGAEIILADSAL-RF-EEILEKGEEILKKTPDGYLL 147 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~-~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~-~~-~~~~~~a~~~~~~~~~~~~~ 147 (280)
.|+..|+...|.. ..++.+--+ -+|++..-+-..-+..++.+|++++.++.+. ++ .+..+.+.+ +..+..+|+
T Consensus 157 ~IiiT~G~q~al~--l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~--~~~~k~~y~ 232 (459)
T COG1167 157 QIVITSGAQQALD--LLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDGIDPEALEEALA--QWKPKAVYV 232 (459)
T ss_pred eEEEeCCHHHHHH--HHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHh--hcCCcEEEE
Confidence 3666665555544 555554333 6677777677788999999999999987532 11 133333221 113466777
Q ss_pred CC-CCCCccHH--HHHHhHHHHHHHh
Q 023565 148 RQ-FENPANPK--IHYETTGPEIWQD 170 (280)
Q Consensus 148 ~~-~~~~~~~~--~g~~t~~~Ei~~q 170 (280)
.| +.||.... .-...--.++.++
T Consensus 233 ~P~~qNPtG~tms~~rR~~Ll~lA~~ 258 (459)
T COG1167 233 TPTFQNPTGVTMSLERRKALLALAEK 258 (459)
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHHH
Confidence 66 56765421 2233344455544
No 285
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=52.31 E-value=1.7e+02 Score=25.85 Aligned_cols=53 Identities=28% Similarity=0.405 Sum_probs=36.7
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 63 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
+.+.+|..-+|...+|-.|.+++..|+.+|.+++++.. ++.+...++.+|++-
T Consensus 135 ~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 187 (329)
T cd08250 135 GEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCDR 187 (329)
T ss_pred cCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCce
Confidence 45667777566666788999999999999987655442 335556667777643
No 286
>PRK06114 short chain dehydrogenase; Provisional
Probab=52.18 E-value=1.5e+02 Score=25.23 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=36.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~ 122 (280)
...+|+.++|--|.++|......|.++++....... ....+.++..|.++..+.
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIA 64 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEE
Confidence 355888888899999999999999987776543221 233445666676665543
No 287
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=52.18 E-value=1.1e+02 Score=27.90 Aligned_cols=55 Identities=25% Similarity=0.336 Sum_probs=38.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
+...+.+|.+-+| ...|..|.+++..|+.+|.+.++++. .+..|...++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~~--~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVVD--HVPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCeE
Confidence 3444566766455 66789999999999999975444443 3467788888889853
No 288
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.80 E-value=1.9e+02 Score=27.27 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=39.6
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 023565 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (280)
Q Consensus 68 g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (280)
+.+-+|+..+|.-|.++|......|.+++++-.+...+......+..+++.+.+|-+
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~ 266 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDIT 266 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCC
Confidence 345678888899999999999999998777644333333334445578788777753
No 289
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=51.69 E-value=1.2e+02 Score=26.10 Aligned_cols=54 Identities=22% Similarity=0.086 Sum_probs=36.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 122 (280)
.+.+|+..+|.-|.++|......|.+++++-..... ......++..|.++..+.
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYV 65 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 356888888999999999999999987666322111 122344556677775554
No 290
>PRK05854 short chain dehydrogenase; Provisional
Probab=51.53 E-value=1.8e+02 Score=25.95 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=22.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 100 (280)
.+-+|+..++--|.++|..-...|.+++++..
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R 46 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVR 46 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 35577777788888888877778877666543
No 291
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=51.42 E-value=1.3e+02 Score=25.90 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=36.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|.-|.++|......|.+++++-.... .+.....++..|.++..+.
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 65 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVK 65 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 35578888899999999999999998776654321 1223444556677765544
No 292
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=51.41 E-value=35 Score=28.16 Aligned_cols=43 Identities=28% Similarity=0.329 Sum_probs=31.4
Q ss_pred HhHHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeC
Q 023565 161 ETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEP 209 (280)
Q Consensus 161 ~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~ 209 (280)
..++.++.+| +-.||.|+.=.|=|-+ ..+|+.+|++++++-.-
T Consensus 54 ~~a~~~L~~~-Gf~PDvI~~H~GWGe~-----Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 54 ARAARQLRAQ-GFVPDVIIAHPGWGET-----LFLKDVFPDAPLIGYFE 96 (171)
T ss_pred HHHHHHHHHc-CCCCCEEEEcCCcchh-----hhHHHhCCCCcEEEEEE
Confidence 3344555555 4579998888877665 48999999999998764
No 293
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=50.99 E-value=83 Score=28.77 Aligned_cols=55 Identities=29% Similarity=0.379 Sum_probs=35.3
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 63 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+.+.+|.+ |+...+|.-|.++...|+.+|.+++++... +..+....+.+|++.++
T Consensus 179 ~~~~~g~~-VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~--~~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKH-LGVAGLGGLGHVAVKIGKAFGLKVTVISSS--SNKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCE-EEEECCCHHHHHHHHHHHHCCCEEEEEeCC--cchhhhHHHhCCCcEEE
Confidence 33456666 555677889999888999999875544332 22334555678886444
No 294
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=50.91 E-value=1.3e+02 Score=27.69 Aligned_cols=88 Identities=22% Similarity=0.279 Sum_probs=38.5
Q ss_pred cEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHH--HHHHHHHHHHhCCCeEEc-CCC-CCCccHHHHHHhHHHHHHH
Q 023565 94 NLIIVMPSTCSMERRIVLRALGAEIILADSALRFEE--ILEKGEEILKKTPDGYLL-RQF-ENPANPKIHYETTGPEIWQ 169 (280)
Q Consensus 94 ~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~-~~~-~~~~~~~~g~~t~~~Ei~~ 169 (280)
|..++.-++.-...-..++.+|-++.++.+...+.. ..+...+..++.+-.+.+ +.. .||.. ....++.+
T Consensus 4 p~~i~~G~g~l~~l~~~~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~------~~v~~~~~ 77 (357)
T cd08181 4 PTKVYFGENCVEKHGEELAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSL------ETIMEAVE 77 (357)
T ss_pred CCeEEECCCHHHHHHHHHHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCH------HHHHHHHH
Confidence 444555444444444555666767666543222121 233444444433111211 111 23322 12334444
Q ss_pred hhC-CCCCEEEEecCCchhH
Q 023565 170 DSG-GKVDAFISGIGTGGTV 188 (280)
Q Consensus 170 q~~-~~~d~vv~~vG~Gg~~ 188 (280)
+.. .++| +|+++|||+.+
T Consensus 78 ~~~~~~~D-~IIavGGGSvi 96 (357)
T cd08181 78 IAKKFNAD-FVIGIGGGSPL 96 (357)
T ss_pred HHHhcCCC-EEEEeCCchHH
Confidence 432 2466 57788877654
No 295
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=50.90 E-value=1.5e+02 Score=26.52 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=38.6
Q ss_pred HHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 60 EDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 60 ~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
.+...+.+|.+-+|. ++|..|.+++..|+.+|.+.++++.. ++.+...++.+|++-++
T Consensus 155 ~~~~~~~~g~~vlI~-g~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~vi 212 (343)
T cd05285 155 CRRAGVRPGDTVLVF-GAGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATHTV 212 (343)
T ss_pred HHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEEe
Confidence 355667777775564 56778889889999999884333322 24566666777775443
No 296
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=50.83 E-value=1.5e+02 Score=24.73 Aligned_cols=53 Identities=25% Similarity=0.261 Sum_probs=36.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEEC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~ 122 (280)
+-+|+.++|..|.+++......|.+++++.....+ ......++..+.++..+.
T Consensus 7 ~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (248)
T PRK05557 7 VALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQ 61 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEE
Confidence 45888888999999999988889987666543321 222344555677776664
No 297
>PRK08068 transaminase; Reviewed
Probab=50.59 E-value=2e+02 Score=26.42 Aligned_cols=77 Identities=10% Similarity=-0.025 Sum_probs=43.5
Q ss_pred CCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEEC
Q 023565 44 CSSVKDRIAYSMIKDAEDKGL-ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122 (280)
Q Consensus 44 tGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~ 122 (280)
.|.-..|-+....... +.|. +.++. .|+..+++..+..++..+ ..+-.-.|++|.-+-..-...++.+|++++.++
T Consensus 70 ~g~~~lr~aia~~~~~-~~g~~~~~~~-~i~it~G~~~~l~~~~~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~ 146 (389)
T PRK08068 70 RGYPFLKEAAADFYKR-EYGVTLDPET-EVAILFGGKAGLVELPQC-LMNPGDTILVPDPGYPDYLSGVALARAQFETMP 146 (389)
T ss_pred CCCHHHHHHHHHHHHH-HhCCCCCCCc-cEEEcCCcHHHHHHHHHH-hCCCCCEEEEcCCCCcchHHHHHhcCCEEEEee
Confidence 5665666544332211 1232 33321 267777777777665433 233334566766554455666788999998887
Q ss_pred C
Q 023565 123 S 123 (280)
Q Consensus 123 ~ 123 (280)
-
T Consensus 147 ~ 147 (389)
T PRK08068 147 L 147 (389)
T ss_pred c
Confidence 4
No 298
>PRK08643 acetoin reductase; Validated
Probab=50.45 E-value=1.6e+02 Score=24.99 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=35.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHCCCEEEEEC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRALGAEIILAD 122 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~l~~~Ga~v~~~~ 122 (280)
+.+|+.++|.-|.++|......|.+++++....... .....++..|.++..+.
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 57 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVK 57 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 458888889999999999999998776654332111 22334455677765554
No 299
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=50.43 E-value=1.5e+02 Score=25.93 Aligned_cols=48 Identities=25% Similarity=0.347 Sum_probs=33.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
.+-+|...+|..|.+++..|+.+|.+++++.+ ++.+...++.+|++-+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~ 195 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEV 195 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEE
Confidence 34344444599999999999999998544433 3467777788898544
No 300
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=50.36 E-value=1.3e+02 Score=25.55 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=35.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|.-|.++|......|.+++++-..... ......++..|.++..+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~ 65 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALA 65 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEE
Confidence 355888888999999999998899986654332111 122344556677776553
No 301
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=50.33 E-value=30 Score=28.54 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=25.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~ 102 (280)
|...++|..|+++|..+...|++++++-+..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 5667889999999999999999999987753
No 302
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=50.29 E-value=86 Score=28.67 Aligned_cols=105 Identities=17% Similarity=0.122 Sum_probs=48.6
Q ss_pred EEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCC-CCCccHHHHHHhHHHHHHHhhC-CC
Q 023565 97 IVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQF-ENPANPKIHYETTGPEIWQDSG-GK 174 (280)
Q Consensus 97 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~~Ei~~q~~-~~ 174 (280)
++...+.-...-..++.+|-++.++.+...++...++..+..++.+-.+....+ .||.. ....|+.++.. .+
T Consensus 4 i~~G~g~~~~l~~~~~~~~~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~------~~v~~~~~~~~~~~ 77 (351)
T cd08170 4 YVQGPGALDELGEYLARLGKRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTR------AEIERLAEIARDNG 77 (351)
T ss_pred EEECCCHHHHHHHHHHHhCCeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCH------HHHHHHHHHHhhcC
Confidence 344444333334455666767755543222333444444444444211111111 23332 12334444432 25
Q ss_pred CCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCC
Q 023565 175 VDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPS 210 (280)
Q Consensus 175 ~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~ 210 (280)
+| +|+++|||+.+ =+++++... ...++|.|-..
T Consensus 78 ~D-~IIavGGGS~i-D~aK~ia~~-~~~P~iaIPTT 110 (351)
T cd08170 78 AD-VVIGIGGGKTL-DTAKAVADY-LGAPVVIVPTI 110 (351)
T ss_pred CC-EEEEecCchhh-HHHHHHHHH-cCCCEEEeCCc
Confidence 67 57788877654 455555433 24566776553
No 303
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=50.28 E-value=1.2e+02 Score=25.42 Aligned_cols=52 Identities=13% Similarity=0.198 Sum_probs=36.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHCCCEEEEE
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGAEIILA 121 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~l~~~Ga~v~~~ 121 (280)
.-+|+..+|.-|+++|......|.+++++..... .......++..|.++...
T Consensus 5 ~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (246)
T PRK12938 5 IAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIAS 58 (246)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEE
Confidence 4588888999999999999999988766543322 122345556678877654
No 304
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=50.12 E-value=1.3e+02 Score=26.73 Aligned_cols=54 Identities=26% Similarity=0.262 Sum_probs=36.1
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
...+.++.+-+| ..+|-.|.++...|+.+|...++++ ..+..+...++.+|++-
T Consensus 162 ~~~~~~~~~VlI-~g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (347)
T cd05278 162 LAGIKPGSTVAV-IGAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGATD 215 (347)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCcE
Confidence 345567777555 4568888888889999997444444 33456777777787643
No 305
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=50.10 E-value=1e+02 Score=28.59 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=41.4
Q ss_pred CcEEEEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHHH--HHHHHHHHHHhCCCeEEc-CCC-CCCccHHHHHHhHHHHH
Q 023565 93 YNLIIVMPSTCSMERRIVLRALGA-EIILADSALRFEE--ILEKGEEILKKTPDGYLL-RQF-ENPANPKIHYETTGPEI 167 (280)
Q Consensus 93 ~~~~ivvp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~-~~~-~~~~~~~~g~~t~~~Ei 167 (280)
+|..|+.-.+.-...-..++.+|. ++.++.+. ...+ ..++..+..++.+-.+.+ +.. .||.. ....-+.|+
T Consensus 6 ~p~~i~fG~g~l~~l~~~l~~~g~~r~lvvt~~-~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~---~~v~~~~~~ 81 (379)
T TIGR02638 6 LNETSYFGAGAIEDIVDEVKRRGFKKALVVTDK-DLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTI---TVVKAGVAA 81 (379)
T ss_pred CCCeEEECcCHHHHHHHHHHhcCCCEEEEEcCc-chhhccchHHHHHHHHHCCCeEEEECCCCCCcCH---HHHHHHHHH
Confidence 456666666555555566677774 55545432 1221 234444444443211222 111 13321 112223344
Q ss_pred HHhhCCCCCEEEEecCCchhH
Q 023565 168 WQDSGGKVDAFISGIGTGGTV 188 (280)
Q Consensus 168 ~~q~~~~~d~vv~~vG~Gg~~ 188 (280)
+++. ++|. |+++|||+.+
T Consensus 82 ~~~~--~~D~-IiaiGGGSvi 99 (379)
T TIGR02638 82 FKAS--GADY-LIAIGGGSPI 99 (379)
T ss_pred HHhc--CCCE-EEEeCChHHH
Confidence 4443 5675 6788887755
No 306
>PRK06172 short chain dehydrogenase; Provisional
Probab=49.79 E-value=1.4e+02 Score=25.22 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=36.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|.-|.++|......|.+++++...... +.....++..+.++..+.
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVA 62 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 355888888999999999999999887666533221 223445566777665543
No 307
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=49.66 E-value=76 Score=29.11 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=37.4
Q ss_pred EEEEeCCC--hHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHH----HHHCCCEEEEEC
Q 023565 71 TLIEVTSG--NTGVGLAFIAAARGYNLIIVMPSTC--SMERRIV----LRALGAEIILAD 122 (280)
Q Consensus 71 ~vv~~SsG--N~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~----l~~~Ga~v~~~~ 122 (280)
+|+-.+.+ |.+++++..++.+|+.++++.|+.. ++..+.. .+..|.++...+
T Consensus 157 ~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (331)
T PRK02102 157 KLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITE 216 (331)
T ss_pred EEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEc
Confidence 36655554 8999999999999999999999864 2233322 345788887765
No 308
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=49.48 E-value=1e+02 Score=28.23 Aligned_cols=51 Identities=10% Similarity=-0.086 Sum_probs=31.5
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
|+..+++..+..+...+- ..-.-.|+++.-.-..-...++.+|.+++.++.
T Consensus 91 i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~ 141 (371)
T PRK05166 91 IILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTV 141 (371)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeec
Confidence 666666677665554432 222234555554444556677889999998865
No 309
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=49.24 E-value=32 Score=31.74 Aligned_cols=109 Identities=15% Similarity=0.202 Sum_probs=57.1
Q ss_pred EEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHH--HHHHHHHHHHhCCCeEEc-CCC-CCCccHHHHHHhHHHHHHHh
Q 023565 95 LIIVMPSTCSMERRIVLRALGAEIILADSALRFEE--ILEKGEEILKKTPDGYLL-RQF-ENPANPKIHYETTGPEIWQD 170 (280)
Q Consensus 95 ~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~-~~~-~~~~~~~~g~~t~~~Ei~~q 170 (280)
..++.-.+.-...-..++.+| ++.++.+. .+.. ..++.....++.+-.+.+ +.+ .+|.. ....-+.+.++.
T Consensus 2 ~~i~~G~g~l~~l~~~l~~~g-r~lvVt~~-~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~---~~v~~~~~~~~~ 76 (366)
T PF00465_consen 2 TKIIFGRGALEELGEELKRLG-RVLVVTDP-SLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTL---EDVDEAAEQARK 76 (366)
T ss_dssp SEEEESTTGGGGHHHHHHCTT-EEEEEEEH-HHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BH---HHHHHHHHHHHH
T ss_pred CcEEEccCHHHHHHHHHHhcC-CEEEEECc-hHHhCccHHHHHHHHhhCceEEEEEecCCCCCcH---HHHHHHHHHHHh
Confidence 456666666556666788888 88777532 3332 356666555554322221 111 22222 122233444444
Q ss_pred hCCCCCEEEEecCCchhHHHHHHHHHhcC------------------CCcEEEEEeCCCC
Q 023565 171 SGGKVDAFISGIGTGGTVTGAGRFLKENN------------------PDIKVYGVEPSES 212 (280)
Q Consensus 171 ~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~------------------p~~~vigVe~~~~ 212 (280)
. ++| +|+++|||+.+ -+++++.... +..++|.|-...+
T Consensus 77 ~--~~D-~IIaiGGGS~~-D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~g 132 (366)
T PF00465_consen 77 F--GAD-CIIAIGGGSVM-DAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAG 132 (366)
T ss_dssp T--TSS-EEEEEESHHHH-HHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSS
T ss_pred c--CCC-EEEEcCCCCcC-cHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcc
Confidence 3 577 57788876654 5555554321 2268888877544
No 310
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=49.18 E-value=1.7e+02 Score=25.12 Aligned_cols=56 Identities=30% Similarity=0.417 Sum_probs=36.3
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
.+.+.+|.+-+|...+|..|.+++..|+.+|.+++++. .++.+...++.+|++-++
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~ 186 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTV---SSEEKAELARAAGADHVI 186 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHCCCCEEE
Confidence 34556666644544468899999999999988755543 234556666777764433
No 311
>PRK07832 short chain dehydrogenase; Provisional
Probab=49.13 E-value=1.7e+02 Score=25.13 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=22.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEe
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVM 99 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivv 99 (280)
.+|+.++|.-|.++|......|.+++++.
T Consensus 3 vlItGas~giG~~la~~la~~G~~vv~~~ 31 (272)
T PRK07832 3 CFVTGAASGIGRATALRLAAQGAELFLTD 31 (272)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 37888888899999888888887755543
No 312
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=48.83 E-value=1.9e+02 Score=25.45 Aligned_cols=53 Identities=26% Similarity=0.342 Sum_probs=35.1
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-CCCEE
Q 023565 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEI 118 (280)
Q Consensus 63 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~-~Ga~v 118 (280)
+.+.++.+-+|...+|-.|.+++..|+..|.+++++.+ +..+...++. +|++-
T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~~ 194 (329)
T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFDA 194 (329)
T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCce
Confidence 44566666445555688999999999999987555433 2355666655 77743
No 313
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.59 E-value=1.5e+02 Score=24.76 Aligned_cols=54 Identities=22% Similarity=0.138 Sum_probs=35.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|.-|.++|......|.+++++..... .......++..|+++..+.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYA 60 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 35577888899999999999889988666543321 1223444566688775543
No 314
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=48.58 E-value=57 Score=29.97 Aligned_cols=51 Identities=25% Similarity=0.384 Sum_probs=36.3
Q ss_pred EEEeCCC--hHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHH----HHHHCCCEEEEEC
Q 023565 72 LIEVTSG--NTGVGLAFIAAARGYNLIIVMPSTCS--MERRI----VLRALGAEIILAD 122 (280)
Q Consensus 72 vv~~SsG--N~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~----~l~~~Ga~v~~~~ 122 (280)
|.-.+.+ |.++++..+++++|++++++.|+... ...+. ..+..|+++...+
T Consensus 159 va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK12562 159 LVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTE 217 (334)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 5555553 88999999999999999999998642 22222 2355788877665
No 315
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=48.55 E-value=1.2e+02 Score=27.18 Aligned_cols=50 Identities=28% Similarity=0.359 Sum_probs=36.0
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 66 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
.++.+-+|...+|..|.+++..|+.+|.+.+.+. . +.+...++.+|++-+
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~---~~~~~~~~~~g~~~v 202 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-S---PKNFDLVKSLGADAV 202 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-C---cccHHHHHhcCCCEE
Confidence 4666645555568999999999999999866544 2 267777788888433
No 316
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=48.30 E-value=1.7e+02 Score=25.74 Aligned_cols=53 Identities=30% Similarity=0.422 Sum_probs=38.1
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 63 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
..++++.+-+|...+|..|.+++..++..|.+++++... +.+...++.+|++-
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~~~~~ 210 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS---PEKLKILKELGADY 210 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHcCCcE
Confidence 556677776666667999999999999999987666532 34556667777643
No 317
>PRK09265 aminotransferase AlaT; Validated
Probab=48.22 E-value=1.7e+02 Score=27.01 Aligned_cols=75 Identities=11% Similarity=-0.003 Sum_probs=39.8
Q ss_pred CCCchhhHHHHHHHHHHHHcCC--CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 43 PCSSVKDRIAYSMIKDAEDKGL--ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~--~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+.|....|-+...... ..+. ..+. .|+..+++..+..++..+- .+-.-.|+++...-..-...++..|++++.
T Consensus 71 ~~G~~~lr~~ia~~~~--~~~~~~~~~~--~i~~t~G~~~~l~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~ 145 (404)
T PRK09265 71 SKGLFSARKAIMQYYQ--QKGIPDVDVD--DIYIGNGVSELIVMAMQAL-LNNGDEVLVPAPDYPLWTAAVSLSGGKPVH 145 (404)
T ss_pred CCCcHHHHHHHHHHHh--ccCCCCCCcc--cEEEeCChHHHHHHHHHHh-CCCCCEEEEeCCCCcChHHHHHHcCCEEEE
Confidence 3555566644433222 2222 3332 3777777777666555443 222234555554444455566778999887
Q ss_pred EC
Q 023565 121 AD 122 (280)
Q Consensus 121 ~~ 122 (280)
++
T Consensus 146 ~~ 147 (404)
T PRK09265 146 YL 147 (404)
T ss_pred Ee
Confidence 64
No 318
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=48.13 E-value=86 Score=28.34 Aligned_cols=51 Identities=24% Similarity=0.251 Sum_probs=36.2
Q ss_pred EEEeCC-ChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHH-HHHCCCEEEEEC
Q 023565 72 LIEVTS-GNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIV-LRALGAEIILAD 122 (280)
Q Consensus 72 vv~~Ss-GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~-l~~~Ga~v~~~~ 122 (280)
|+..+. +|.+++++..++.+|++++++.|+.-. ...++. .+..|.++...+
T Consensus 155 i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 155 VAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred EEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 443333 799999999999999999999998642 223332 466788887664
No 319
>PRK07062 short chain dehydrogenase; Provisional
Probab=47.85 E-value=1.8e+02 Score=24.85 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=25.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 100 (280)
...+|+..+|.-|.++|......|.+++++..
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r 40 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGR 40 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 35588888899999999988888888766544
No 320
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=47.80 E-value=1.3e+02 Score=26.82 Aligned_cols=58 Identities=26% Similarity=0.314 Sum_probs=37.5
Q ss_pred CCCCCCCeEEEEe-CCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEE
Q 023565 63 GLITPGKTTLIEV-TSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILA 121 (280)
Q Consensus 63 g~~~~g~~~vv~~-SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~ 121 (280)
..+++|.+ |+.. .+|..|.+++..|+.+|.++++...... -..+...++.+|++-++.
T Consensus 142 ~~~~~g~~-vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~ 201 (341)
T cd08290 142 VKLQPGDW-VIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLT 201 (341)
T ss_pred cccCCCCE-EEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEe
Confidence 34566666 5544 4589999999999999988766654321 124556667788765443
No 321
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=47.75 E-value=1.8e+02 Score=25.67 Aligned_cols=27 Identities=26% Similarity=0.255 Sum_probs=11.0
Q ss_pred HHHHHHcCCcEEEEeCCCCCHHHHHHH
Q 023565 85 AFIAAARGYNLIIVMPSTCSMERRIVL 111 (280)
Q Consensus 85 A~~a~~~G~~~~ivvp~~~~~~~~~~l 111 (280)
.-+|+..|+..+-++++++++.+++.+
T Consensus 133 ~~~~~~~gl~~I~lv~p~t~~~Ri~~i 159 (259)
T PF00290_consen 133 REAAKKHGLDLIPLVAPTTPEERIKKI 159 (259)
T ss_dssp HHHHHHTT-EEEEEEETTS-HHHHHHH
T ss_pred HHHHHHcCCeEEEEECCCCCHHHHHHH
Confidence 333444444444444444444444443
No 322
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=47.65 E-value=1.7e+02 Score=24.57 Aligned_cols=51 Identities=33% Similarity=0.495 Sum_probs=31.6
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 023565 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (280)
Q Consensus 63 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (280)
..+.++.+-+|...++ .|.+++..++..|.+++++.+. +.+...++.+|++
T Consensus 130 ~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 180 (271)
T cd05188 130 GVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGAD 180 (271)
T ss_pred cCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCc
Confidence 3345666645554445 9999999998888766555433 3455555666653
No 323
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=47.62 E-value=1.4e+02 Score=26.56 Aligned_cols=52 Identities=27% Similarity=0.256 Sum_probs=35.0
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcC-CcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 64 LITPGKTTLIEVTSGNTGVGLAFIAAARG-YNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 64 ~~~~g~~~vv~~SsGN~g~alA~~a~~~G-~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
.+.++.+-+|.. +|..|.+++..|+.+| .+++++.. ++.+...++.+|++-+
T Consensus 164 ~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~ 216 (340)
T cd05284 164 YLDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGADHV 216 (340)
T ss_pred cCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCcEE
Confidence 345566645544 6679999999999998 67655432 3466777788887433
No 324
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=47.62 E-value=82 Score=23.44 Aligned_cols=93 Identities=19% Similarity=0.175 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC--CCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHH
Q 023565 82 VGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS--ALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIH 159 (280)
Q Consensus 82 ~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 159 (280)
..+|.+.+..|+++.++=.......-.+.++.+..+++.+.. ..++....+.++...+..++...+ ..|
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv---------~GG 88 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIV---------VGG 88 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEE---------EEE
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEE---------EEC
Confidence 445666677788888663333335566778888888887754 223344444444433333332222 122
Q ss_pred -HHhHHHH-HHHhhCCCCCEEEEecCC
Q 023565 160 -YETTGPE-IWQDSGGKVDAFISGIGT 184 (280)
Q Consensus 160 -~~t~~~E-i~~q~~~~~d~vv~~vG~ 184 (280)
+.+..+| +++.. ..+|+++..=|-
T Consensus 89 ~~~t~~~~~~l~~~-~~~D~vv~GegE 114 (121)
T PF02310_consen 89 PHATADPEEILREY-PGIDYVVRGEGE 114 (121)
T ss_dssp SSSGHHHHHHHHHH-HTSEEEEEETTS
T ss_pred CchhcChHHHhccC-cCcceecCCChH
Confidence 2244444 34432 357888776553
No 325
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=47.60 E-value=51 Score=30.24 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=34.9
Q ss_pred EEEeCCC--hHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHH----HHHHCCCEEEEEC
Q 023565 72 LIEVTSG--NTGVGLAFIAAARGYNLIIVMPSTCS--MERRI----VLRALGAEIILAD 122 (280)
Q Consensus 72 vv~~SsG--N~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~----~l~~~Ga~v~~~~ 122 (280)
|.-.+.+ |.++|+..+++++|+.++++.|+... ...+. ..+..|+++...+
T Consensus 159 ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~ 217 (334)
T PRK01713 159 YVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTD 217 (334)
T ss_pred EEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 5555554 67889999999999999999988642 22221 2345788887765
No 326
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=47.60 E-value=1.5e+02 Score=25.45 Aligned_cols=50 Identities=26% Similarity=0.243 Sum_probs=34.8
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHHCC
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYN-LIIVMPSTCSMERRIVLRALG 115 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~-~~ivvp~~~~~~~~~~l~~~G 115 (280)
...+.+|.+-+|. ..|..|.++...|+.+|.+ ++++ ..++++...++.+|
T Consensus 92 ~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~---~~~~~~~~~~~~~g 142 (277)
T cd08255 92 DAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGV---DPDAARRELAEALG 142 (277)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE---CCCHHHHHHHHHcC
Confidence 4556777774444 6788999999999999988 4333 23456666777777
No 327
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=47.58 E-value=1.6e+02 Score=26.11 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=33.4
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 68 GKTTLIEVTSGNTGVGLAFIAAAR-GYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 68 g~~~vv~~SsGN~g~alA~~a~~~-G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
|.+-+|...+|..|.+++..|+.+ |.+++.+... +++...++.+|++-++
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHHVI 199 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCEEE
Confidence 556455555688888888888887 8876555333 3566666778875443
No 328
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=47.58 E-value=2.1e+02 Score=25.56 Aligned_cols=51 Identities=27% Similarity=0.405 Sum_probs=34.1
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCC
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGA 116 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga 116 (280)
...+.++.+-+|.. .|..|.++...|+.+|++++++... ..+...++.+|+
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~---~~~~~~~~~~g~ 210 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDID---DDKLELARELGA 210 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHhCC
Confidence 34455666645554 7888888888898888876555332 455666666776
No 329
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=47.42 E-value=2.4e+02 Score=26.37 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=19.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp 100 (280)
|..-++|..+++++++++..|+.+.+++.
T Consensus 3 iliiG~G~~~~~l~~~~~~~~~~~~~~~~ 31 (423)
T TIGR00877 3 VLVIGNGGREHALAWKLAQSPLVKYVYVA 31 (423)
T ss_pred EEEECCChHHHHHHHHHHhCCCccEEEEE
Confidence 45556666777777777777766666643
No 330
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=47.41 E-value=1.4e+02 Score=27.60 Aligned_cols=109 Identities=14% Similarity=0.070 Sum_probs=49.0
Q ss_pred CcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeE-EcCCCCCCccHHHHHHhHHHHHHHhh
Q 023565 93 YNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGY-LLRQFENPANPKIHYETTGPEIWQDS 171 (280)
Q Consensus 93 ~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~g~~t~~~Ei~~q~ 171 (280)
.|..++.-++.-...-..++.+|-++.++.+...++...++..+..++.+-.+ |..-..+|.. ....++.++.
T Consensus 7 ~p~~i~~G~g~~~~l~~~l~~~g~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~------~~v~~~~~~~ 80 (366)
T PRK09423 7 SPSKYVQGKGALARLGEYLKPLGKRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSD------NEIDRLVAIA 80 (366)
T ss_pred CCceEEECCCHHHHHHHHHHHcCCEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCH------HHHHHHHHHH
Confidence 34555555554444445556667666555432222333344444444432111 2111123322 1233444444
Q ss_pred C-CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCC
Q 023565 172 G-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPS 210 (280)
Q Consensus 172 ~-~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~ 210 (280)
. .++| +|+++|||+. .=++++.... ...++|.|-+.
T Consensus 81 ~~~~~d-~IIavGGGsv-~D~aK~iA~~-~~~p~i~IPTt 117 (366)
T PRK09423 81 EENGCD-VVIGIGGGKT-LDTAKAVADY-LGVPVVIVPTI 117 (366)
T ss_pred HhcCCC-EEEEecChHH-HHHHHHHHHH-cCCCEEEeCCc
Confidence 2 2466 5677887654 3444444332 23566666553
No 331
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=47.39 E-value=1.5e+02 Score=26.12 Aligned_cols=53 Identities=25% Similarity=0.396 Sum_probs=37.1
Q ss_pred CCCCC-eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 65 ITPGK-TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 65 ~~~g~-~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+.++. +-+|...+|..|.+++..|+.+|.+.+++... +.+...++.+|++-+.
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~~~~ 195 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGASEVI 195 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCcEEE
Confidence 55666 64555556999999999999999986555433 3455777888885433
No 332
>PRK09414 glutamate dehydrogenase; Provisional
Probab=47.25 E-value=90 Score=29.93 Aligned_cols=52 Identities=10% Similarity=-0.063 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 023565 49 DRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (280)
Q Consensus 49 ~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 100 (280)
-||..+.+..+.+.........+|+..+.||-|..+|.....+|.+++.+.+
T Consensus 212 g~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 212 GYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred cHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4677777776654433333345699999999999999998888877777765
No 333
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=47.20 E-value=55 Score=30.03 Aligned_cols=51 Identities=24% Similarity=0.212 Sum_probs=36.1
Q ss_pred EEEeCC--ChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHH----HHHCCCEEEEEC
Q 023565 72 LIEVTS--GNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIV----LRALGAEIILAD 122 (280)
Q Consensus 72 vv~~Ss--GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~----l~~~Ga~v~~~~ 122 (280)
|+-.+. .|.++|++.+++.+|+.++++.|+... +..+.. .+..|+++...+
T Consensus 158 ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 158 FTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred EEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 555554 488999999999999999999998642 233322 345788887665
No 334
>PRK06128 oxidoreductase; Provisional
Probab=47.16 E-value=2e+02 Score=25.29 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=38.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC---SMERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~---~~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|--|.++|..-...|.++++...... .......++..|.++..+.
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALP 112 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEe
Confidence 35588888899999999999999998876543211 1234456677787776554
No 335
>PRK08303 short chain dehydrogenase; Provisional
Probab=47.15 E-value=1.7e+02 Score=26.13 Aligned_cols=53 Identities=25% Similarity=0.245 Sum_probs=34.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-----------CHHHHHHHHHCCCEEEEE
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-----------SMERRIVLRALGAEIILA 121 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-----------~~~~~~~l~~~Ga~v~~~ 121 (280)
...+|+..++--|.++|......|.+++++-.... -....+.++..|.+++.+
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 72 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAV 72 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEE
Confidence 35577888888999999988889988777643211 122334556677766544
No 336
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=47.10 E-value=1.1e+02 Score=27.27 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=24.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~ 102 (280)
+++..++|-.++|++++....|++-+.++..+
T Consensus 126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 47777778888998888888888766666554
No 337
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=46.74 E-value=2e+02 Score=25.18 Aligned_cols=54 Identities=28% Similarity=0.374 Sum_probs=36.4
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 63 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
..+.+|.. ++...+|..|.+++..|+..|.++++..+ ++.+.+.++.+|++-++
T Consensus 156 ~~~~~g~~-vli~g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 209 (336)
T cd08276 156 GPLKPGDT-VLVQGTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHVI 209 (336)
T ss_pred cCCCCCCE-EEEECCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 44566666 44456788999999999999988555443 34566666667765443
No 338
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=46.63 E-value=1.6e+02 Score=24.53 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=36.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|.-|.+++......|.+++++...... ......++..+.++..+.
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 61 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQ 61 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 355788888999999999988889887666543211 233445566776665554
No 339
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=46.62 E-value=3.9e+02 Score=29.26 Aligned_cols=169 Identities=18% Similarity=0.189 Sum_probs=86.0
Q ss_pred EEEeCCCCCCCchhhHHHH------HHHHHHHHcCCCCCCCeEEEEeCCChHH--------HHHHHHHHHcC-CcEEEEe
Q 023565 35 AAKLETMEPCSSVKDRIAY------SMIKDAEDKGLITPGKTTLIEVTSGNTG--------VGLAFIAAARG-YNLIIVM 99 (280)
Q Consensus 35 ~~K~E~~~ptGS~K~R~a~------~~l~~a~~~g~~~~g~~~vv~~SsGN~g--------~alA~~a~~~G-~~~~ivv 99 (280)
.+==|..|+|||-|.|-+. ..+..|.++ +..|.. ++.-..|... +-+-....... .++-+.+
T Consensus 360 ~~IGER~N~~G~k~~~~~i~~~d~~~al~~A~~q--ve~GA~-iIDVn~g~~~id~~eem~rvv~~i~~~~~~~~vPlsI 436 (1229)
T PRK09490 360 VNVGERTNVTGSAKFARLIKEEDYDEALDVARQQ--VENGAQ-IIDINMDEGMLDSEAAMVRFLNLIASEPDIARVPIMI 436 (1229)
T ss_pred cccccccchhccHHHHHHHHcCCHHHHHHHHHHH--HHCCCC-EEEECCCCCCCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 3345788999998888774 444445432 122334 7777665422 22222222211 2344555
Q ss_pred CCCCCHHHHHHHHHC-CCEEEEECCCC-CHHHHHHHHHHHHHhCCCeEEcCCCC---CCccHHHHHHhHHHHHHHh----
Q 023565 100 PSTCSMERRIVLRAL-GAEIILADSAL-RFEEILEKGEEILKKTPDGYLLRQFE---NPANPKIHYETTGPEIWQD---- 170 (280)
Q Consensus 100 p~~~~~~~~~~l~~~-Ga~v~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~g~~t~~~Ei~~q---- 170 (280)
+...+......++.+ |+.+ +-+-+. ..++..+....++++.+-.+.+-.++ -|... +..-.++..+++.
T Consensus 437 DS~~~~ViEaaLk~~~G~~I-INSIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~t~-e~r~~ia~r~~~~~~~~ 514 (1229)
T PRK09490 437 DSSKWEVIEAGLKCIQGKGI-VNSISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQADTR-ERKIEICKRAYDILTEE 514 (1229)
T ss_pred eCCcHHHHHHHHhhcCCCCE-EEeCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCH-HHHHHHHHHHHHHHHHH
Confidence 666666667777776 5444 333222 11234445556666664444443443 23333 3444444444443
Q ss_pred hCCC-----CCEEEEecCCchh-----HHH---HHHHHHhcCCCcEEE-EEe
Q 023565 171 SGGK-----VDAFISGIGTGGT-----VTG---AGRFLKENNPDIKVY-GVE 208 (280)
Q Consensus 171 ~~~~-----~d~vv~~vG~Gg~-----~~G---i~~~~k~~~p~~~vi-gVe 208 (280)
.+-. +|-.+.|+++|-- ..- ..+.+|+..|.++++ ||.
T Consensus 515 ~Gi~~~dIi~Dplv~~v~t~~ee~~~~~~~~leair~ik~~~P~~~~~~GlS 566 (1229)
T PRK09490 515 VGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQNLPHAKISGGVS 566 (1229)
T ss_pred cCCCHHHEEEcCCcceeecChHHHHHHHHHHHHHHHHHHHHCCCCcEEEeec
Confidence 3211 5777888888721 111 224556667887554 443
No 340
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=46.58 E-value=91 Score=29.86 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=39.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC---------C---------HHHHHHHHHCCCEEEE
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC---------S---------MERRIVLRALGAEIIL 120 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~---------~---------~~~~~~l~~~Ga~v~~ 120 (280)
..|+..++|-.|.+.|..+++.|.+++++-.... + ....+.++.+|.+++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 3599999999999999999999999888743321 1 2345677889988764
No 341
>PRK08278 short chain dehydrogenase; Provisional
Probab=46.50 E-value=1.9e+02 Score=24.94 Aligned_cols=54 Identities=24% Similarity=0.274 Sum_probs=37.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--------MERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--------~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|--|.++|......|.+++++.....+ ......++..|.+++.+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 68 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLV 68 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEE
Confidence 355788888999999999999999988777644321 112234566777765553
No 342
>PRK10490 sensor protein KdpD; Provisional
Probab=46.49 E-value=2.8e+02 Score=29.15 Aligned_cols=107 Identities=12% Similarity=0.020 Sum_probs=60.6
Q ss_pred eEEEEeCCChHHHH----HHHHHHHcCCcEEEEe-CCC----CCH-------HHHHHHHHCCCEEEEECCCCCHHHHHHH
Q 023565 70 TTLIEVTSGNTGVG----LAFIAAARGYNLIIVM-PST----CSM-------ERRIVLRALGAEIILADSALRFEEILEK 133 (280)
Q Consensus 70 ~~vv~~SsGN~g~a----lA~~a~~~G~~~~ivv-p~~----~~~-------~~~~~l~~~Ga~v~~~~~~~~~~~~~~~ 133 (280)
+-+|+-|++-++.. -+..|..++-+.+++. ... .+. ..+++.+.+||+++.+.+. +. .+.
T Consensus 252 riLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~-dv---a~~ 327 (895)
T PRK10490 252 AILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDP-AE---EKA 327 (895)
T ss_pred eEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-CH---HHH
Confidence 44677777666533 3456677888876654 211 111 1244557799998888753 22 334
Q ss_pred HHHHHHhCCC-eEEcCCCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecC
Q 023565 134 GEEILKKTPD-GYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIG 183 (280)
Q Consensus 134 a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG 183 (280)
..+++++++- ...+-+.... .+ ...+++...+++.. +++|.-|+|..
T Consensus 328 i~~~A~~~~vt~IViG~s~~~-~~-~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 328 VLRYAREHNLGKIIIGRRASR-RW-WRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHHHhCCCEEEECCCCCC-CC-ccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 4455555531 2333332221 12 22357788888887 67888888744
No 343
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=46.48 E-value=93 Score=29.76 Aligned_cols=52 Identities=21% Similarity=0.179 Sum_probs=40.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--------------C----HHHHHHHHHCCCEEEEE
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--------------S----MERRIVLRALGAEIILA 121 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--------------~----~~~~~~l~~~Ga~v~~~ 121 (280)
..|+...+|-.|.+.|..++..|.++++|-.... + ....+.++.+|.+++.-
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~ 213 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTN 213 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeC
Confidence 3599999999999999999999999998864321 1 12456678889887653
No 344
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=46.31 E-value=2.3e+02 Score=25.68 Aligned_cols=53 Identities=25% Similarity=0.315 Sum_probs=35.4
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (280)
...+.++.+-+|. ..|..|.++...|+.+|.+.++++.. +..+...++.+|++
T Consensus 177 ~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~ 229 (363)
T cd08279 177 TARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGAT 229 (363)
T ss_pred ccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCe
Confidence 3445677665555 66889999999999999873343322 34556666778873
No 345
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=46.19 E-value=2e+02 Score=25.50 Aligned_cols=55 Identities=33% Similarity=0.486 Sum_probs=38.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
+...+.+|.+-+|. .+|-.|.++...|+.+|.+.++++.. ++.+...++.+|++-
T Consensus 155 ~~~~~~~g~~VlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~~ 209 (341)
T cd08262 155 RRARLTPGEVALVI-GCGPIGLAVIAALKARGVGPIVASDF--SPERRALALAMGADI 209 (341)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcE
Confidence 45556677675555 56888888888999999876555433 457777778888743
No 346
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=46.17 E-value=98 Score=26.91 Aligned_cols=51 Identities=31% Similarity=0.372 Sum_probs=37.5
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 67 ~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+|.+-+|...+|..|.+++..|+.+|.+.+.+.+ ++++...++.+|+....
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 182 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAEVV 182 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEE
Confidence 4666566666699999999999999998555432 35778888889986443
No 347
>PRK12939 short chain dehydrogenase; Provisional
Probab=46.16 E-value=1.8e+02 Score=24.37 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=35.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|.-|.++|......|.+++++..... .......++..+.++..+.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIA 62 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 35578888899999999999999988666532211 1123344455676665544
No 348
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=46.15 E-value=1.5e+02 Score=27.39 Aligned_cols=85 Identities=19% Similarity=0.259 Sum_probs=36.8
Q ss_pred EEEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHHHHHHhCCCeEE-cCCC-CCCccHHHHHHhHHHHHHHhhC
Q 023565 96 IIVMPSTCSMERRIVLRALGA-EIILADSALRFEEILEKGEEILKKTPDGYL-LRQF-ENPANPKIHYETTGPEIWQDSG 172 (280)
Q Consensus 96 ~ivvp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~g~~t~~~Ei~~q~~ 172 (280)
.++.-.+.-...-..++.+|. ++.++.+...+ ..+...+..++.+-.+. .+.. .||.. -...-+.|++++.
T Consensus 3 ~i~~G~g~l~~l~~~~~~~g~~~~livtd~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~p~~---~~v~~~~~~~~~~- 76 (367)
T cd08182 3 RIIFGRGAIAKLPSLLKGLGGKRVLLVTGPRSA--IASGLTDILKPLGTLVVVFDDVQPNPDL---EDLAAGIRLLREF- 76 (367)
T ss_pred eEEECcCHHHHHHHHHHhcCCCeEEEEeCchHH--HHHHHHHHHHHcCCeEEEEcCcCCCcCH---HHHHHHHHHHHhc-
Confidence 344444444444455666774 45555432211 22333344443321122 2222 23321 1122233444443
Q ss_pred CCCCEEEEecCCchhH
Q 023565 173 GKVDAFISGIGTGGTV 188 (280)
Q Consensus 173 ~~~d~vv~~vG~Gg~~ 188 (280)
++|. |+++|||+.+
T Consensus 77 -~~D~-IIavGGGs~~ 90 (367)
T cd08182 77 -GPDA-VLAVGGGSVL 90 (367)
T ss_pred -CcCE-EEEeCCcHHH
Confidence 5775 6788887643
No 349
>PRK12744 short chain dehydrogenase; Provisional
Probab=46.12 E-value=1.6e+02 Score=25.05 Aligned_cols=53 Identities=23% Similarity=0.192 Sum_probs=35.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC--CC---HHHHHHHHHCCCEEEEEC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST--CS---MERRIVLRALGAEIILAD 122 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~--~~---~~~~~~l~~~Ga~v~~~~ 122 (280)
+.+|+..+|.-|.++|..-...|.+++++.... .. ....+.++..+.++..+.
T Consensus 10 ~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 67 (257)
T PRK12744 10 VVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQ 67 (257)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEe
Confidence 457888889999999999888999966665321 11 122344555677765543
No 350
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=46.02 E-value=1.4e+02 Score=26.57 Aligned_cols=47 Identities=26% Similarity=0.299 Sum_probs=33.4
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 68 g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
|.+-+|...+|..|.+++..|+.+|++++++..+ .+...++.+|++-
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~~ 209 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGADD 209 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCce
Confidence 6664555556999999999999999986655432 3566777788743
No 351
>PRK07478 short chain dehydrogenase; Provisional
Probab=45.98 E-value=1.6e+02 Score=24.89 Aligned_cols=54 Identities=20% Similarity=0.211 Sum_probs=35.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|.-|.++|..-...|.+++++.....+ ......++..|.++..+.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALA 61 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 355788888999999999988999987666432111 122344566677765553
No 352
>PRK06181 short chain dehydrogenase; Provisional
Probab=45.96 E-value=1.5e+02 Score=25.25 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=35.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEEC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 122 (280)
+-+|+..+|.-|.+++......|.+++++...... ......++..|.++..+.
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~ 56 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVP 56 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 44788888999999999998999887776543211 122344555677765543
No 353
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=45.91 E-value=1.7e+02 Score=26.13 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=34.2
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
++..++|..+..++..+-..+-.-.|++|...-......++..|++++.++.
T Consensus 36 ~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (352)
T cd00616 36 AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDI 87 (352)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEec
Confidence 5556677766555554432233356777877766777778888999888864
No 354
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=45.89 E-value=1.3e+02 Score=26.44 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=27.2
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEE
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIV 98 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~iv 98 (280)
...+++|.+-+|...+|..|.+++..|+..|.+++++
T Consensus 157 ~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~ 193 (325)
T cd08264 157 TAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAV 193 (325)
T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEE
Confidence 3456677674554445999999999999999876554
No 355
>PRK05876 short chain dehydrogenase; Provisional
Probab=45.78 E-value=1.5e+02 Score=25.73 Aligned_cols=54 Identities=17% Similarity=0.085 Sum_probs=35.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|.-|.++|......|.+++++..... .......++..|.++..+.
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~ 61 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVM 61 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 35588888899999999999999998665542211 1122334555677775543
No 356
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.57 E-value=1.7e+02 Score=24.66 Aligned_cols=53 Identities=30% Similarity=0.389 Sum_probs=35.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEEC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~ 122 (280)
+-+|+..+|.-|.++|..-...|.+++++.....+ ......++..+.++..+.
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 58 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFP 58 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEE
Confidence 34788888999999999988889887776533221 233444555676665553
No 357
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=45.34 E-value=2e+02 Score=24.66 Aligned_cols=55 Identities=22% Similarity=0.342 Sum_probs=38.9
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
+.+.+.+|.+-+|...+|..|.++...++.+|++.+++.+. ..+...++.+|++-
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~ 168 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVPH 168 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCCE
Confidence 35567777775555667889999999999999885555433 35666667788743
No 358
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=45.32 E-value=1.1e+02 Score=29.12 Aligned_cols=51 Identities=24% Similarity=0.210 Sum_probs=38.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCC-cEEEEeCCC-----CCHHHHHHHHHCCCEEEEE
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGY-NLIIVMPST-----CSMERRIVLRALGAEIILA 121 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~-~~~ivvp~~-----~~~~~~~~l~~~Ga~v~~~ 121 (280)
+++..++||.|.-+|..+..+|. +++++.... ........++..|.+++.-
T Consensus 275 ~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~ 331 (457)
T PRK11749 275 RVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWL 331 (457)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEec
Confidence 48999999999999999999998 688876532 1344566677788887653
No 359
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.20 E-value=2.5e+02 Score=25.87 Aligned_cols=166 Identities=19% Similarity=0.184 Sum_probs=96.9
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhC
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKT 141 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 141 (280)
-..++||.+ ++.+.=|--|.|++.-|+..|-.=+|=++- .+.|.+..+.+||.=
T Consensus 187 ~Akv~~Gst-vAVfGLG~VGLav~~Gaka~GAsrIIgvDi--N~~Kf~~ak~fGaTe----------------------- 240 (375)
T KOG0022|consen 187 TAKVEPGST-VAVFGLGGVGLAVAMGAKAAGASRIIGVDI--NPDKFEKAKEFGATE----------------------- 240 (375)
T ss_pred hcccCCCCE-EEEEecchHHHHHHHhHHhcCcccEEEEec--CHHHHHHHHhcCcce-----------------------
Confidence 334566655 888888999999999998888655554433 335555555565522
Q ss_pred CCeEEcCCCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCccc------
Q 023565 142 PDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVL------ 215 (280)
Q Consensus 142 ~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~~------ 215 (280)
+++|-+-.. .+-.-|.|..++.+|+-|=++|+=.++.-.....+.-+-..-++||.+.+..--
T Consensus 241 ----~iNp~d~~~-------~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l 309 (375)
T KOG0022|consen 241 ----FINPKDLKK-------PIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQL 309 (375)
T ss_pred ----ecChhhccc-------cHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhh
Confidence 333321111 111122333456799999999998888887777777778889999999876521
Q ss_pred cCCCC-CCcccCcccC-CCCccccc----c-ccCCeEE--EeCHHHHHHHHHHhhhcC
Q 023565 216 NGGQR-GKHLIQGIGA-GIIPSVLD----I-DILDEVI--TVSHKIDLHLLHFCCCSS 264 (280)
Q Consensus 216 ~~g~~-~~~~~~glg~-~~~~~~~~----~-~~vd~~~--~V~d~ea~~~~~~la~~e 264 (280)
..|+. ..+...|+-. ..+|..+. . -.+|.++ ..+-+|+-++..+|.+-.
T Consensus 310 ~~GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~Gk 367 (375)
T KOG0022|consen 310 VTGRTWKGSAFGGFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGK 367 (375)
T ss_pred ccccEEEEEecccccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCc
Confidence 11111 1111112111 11343321 1 1244443 367788888888886544
No 360
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.18 E-value=1.8e+02 Score=24.25 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=35.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEEC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 122 (280)
+-+|+.++|..|.+++......|.+++++.....+ ......++..|.+++.+.
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 62 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIAT 62 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEE
Confidence 45888888999999999988899987776543221 122334555677776554
No 361
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=45.17 E-value=56 Score=27.87 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=25.9
Q ss_pred eEEEEeCC--ChHHHHHHHHHHHcCCcEEEEeCCCC
Q 023565 70 TTLIEVTS--GNTGVGLAFIAAARGYNLIIVMPSTC 103 (280)
Q Consensus 70 ~~vv~~Ss--GN~g~alA~~a~~~G~~~~ivvp~~~ 103 (280)
++|.-.|+ |-+-..||.+|++.|+++.+++...-
T Consensus 43 TTifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~~ 78 (207)
T PF11814_consen 43 TTIFMTSGHGGCGPFGLALAAARRGFKVEVWVSTDG 78 (207)
T ss_pred ceecccCCCCCcChHHHHHHHHHcCCceEEEECCCC
Confidence 44655553 77778888889999999999997643
No 362
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=45.09 E-value=65 Score=29.63 Aligned_cols=51 Identities=27% Similarity=0.355 Sum_probs=35.9
Q ss_pred EEEeCCC--hHHHHHHHHHHHcCCcEEEEeCCCCC--HHHH----HHHHHCCCEEEEEC
Q 023565 72 LIEVTSG--NTGVGLAFIAAARGYNLIIVMPSTCS--MERR----IVLRALGAEIILAD 122 (280)
Q Consensus 72 vv~~SsG--N~g~alA~~a~~~G~~~~ivvp~~~~--~~~~----~~l~~~Ga~v~~~~ 122 (280)
|.-.+.+ |.++++..+++.+|+.++++.|+... +..+ ...+..|.++...+
T Consensus 159 ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 217 (336)
T PRK03515 159 LAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTE 217 (336)
T ss_pred EEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEc
Confidence 5555544 78999999999999999999998642 2222 23455788887765
No 363
>PLN02342 ornithine carbamoyltransferase
Probab=44.86 E-value=97 Score=28.66 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=37.2
Q ss_pred EEEeCC-ChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHCCC-EEEEEC
Q 023565 72 LIEVTS-GNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLRALGA-EIILAD 122 (280)
Q Consensus 72 vv~~Ss-GN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~l~~~Ga-~v~~~~ 122 (280)
|+..+. .|.+++++.+++++|+.++++.|+.. ++..++.++.+|. ++...+
T Consensus 197 va~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~ 251 (348)
T PLN02342 197 VVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITN 251 (348)
T ss_pred EEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEc
Confidence 444444 68999999999999999999999864 3445555666774 666554
No 364
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.80 E-value=1.6e+02 Score=24.78 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=36.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEEC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~ 122 (280)
+-+|+.++|--|.+++......|.++++....... ......++..|.++..+.
T Consensus 8 ~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK06077 8 VVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVL 62 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEE
Confidence 55778888999999999888899987665533221 233455666777765543
No 365
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=44.77 E-value=1.9e+02 Score=26.81 Aligned_cols=83 Identities=16% Similarity=0.115 Sum_probs=36.8
Q ss_pred EEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEc-CCCCCCccHHHHHHhHHHHHHHhhC-CC
Q 023565 97 IVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLL-RQFENPANPKIHYETTGPEIWQDSG-GK 174 (280)
Q Consensus 97 ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~g~~t~~~Ei~~q~~-~~ 174 (280)
|+.-.+.-...-+.++.+|-++.++.+.... ..+...+..++.+-.+.+ ....||.. ....|+.++.. .+
T Consensus 4 i~~G~g~~~~l~~~l~~~~~r~livtd~~~~--~~~~v~~~L~~~g~~~~~~~~~~~p~~------~~v~~~~~~~~~~~ 75 (374)
T cd08183 4 IHFGRGVAKELPALAAELGRRVLLVTGASSL--RAAWLIEALRAAGIEVTHVVVAGEPSV------ELVDAAVAEARNAG 75 (374)
T ss_pred EEECcCHHHHHHHHHHHcCCcEEEEECCchH--HHHHHHHHHHHcCCeEEEecCCCCcCH------HHHHHHHHHHHhcC
Confidence 3444443333334455567676555432222 334444444443222222 11123321 23334444432 25
Q ss_pred CCEEEEecCCchhH
Q 023565 175 VDAFISGIGTGGTV 188 (280)
Q Consensus 175 ~d~vv~~vG~Gg~~ 188 (280)
+|. |+++|||+.+
T Consensus 76 ~D~-IIaiGGGS~~ 88 (374)
T cd08183 76 CDV-VIAIGGGSVI 88 (374)
T ss_pred CCE-EEEecCchHH
Confidence 774 7889987654
No 366
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=44.70 E-value=2.2e+02 Score=25.06 Aligned_cols=81 Identities=11% Similarity=0.130 Sum_probs=43.6
Q ss_pred EEEEeCCCCCC-CchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-----CHHH
Q 023565 34 IAAKLETMEPC-SSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-----SMER 107 (280)
Q Consensus 34 l~~K~E~~~pt-GS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-----~~~~ 107 (280)
|.+..|.-.-. .+|=.|... +.....++|. ...+++...++... -.-+..|+++..+ |+.. ..+.
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl~-LA~~l~~~g~----~v~f~~~~~~~~~~---~~i~~~g~~v~~~-~~~~~~~~d~~~~ 72 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCLT-LARALHAQGA----EVAFACKPLPGDLI---DLLLSAGFPVYEL-PDESSRYDDALEL 72 (279)
T ss_pred EEEEecCCccccccHHHHHHH-HHHHHHHCCC----EEEEEeCCCCHHHH---HHHHHcCCeEEEe-cCCCchhhhHHHH
Confidence 55666655433 355555432 2222334553 23344444444322 2346788886664 4432 1245
Q ss_pred HHHHHHCCCEEEEECC
Q 023565 108 RIVLRALGAEIILADS 123 (280)
Q Consensus 108 ~~~l~~~Ga~v~~~~~ 123 (280)
...++..+.+++.++.
T Consensus 73 ~~~l~~~~~d~vV~D~ 88 (279)
T TIGR03590 73 INLLEEEKFDILIVDH 88 (279)
T ss_pred HHHHHhcCCCEEEEcC
Confidence 6777888899999985
No 367
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=44.67 E-value=1.9e+02 Score=24.95 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=59.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH---------------HCCCEEEEECCCCCHHHHHHHHH
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR---------------ALGAEIILADSALRFEEILEKGE 135 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~---------------~~Ga~v~~~~~~~~~~~~~~~a~ 135 (280)
.|+..++|.-|..=+..-...|-+++||-|+-.+.-. ...+ ..|+.+++.-.+ -.+.-+...
T Consensus 27 ~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~-~l~~~~~i~~~~r~~~~~dl~g~~LViaATd--D~~vN~~I~ 103 (223)
T PRK05562 27 KVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFL-DLKKYGNLKLIKGNYDKEFIKDKHLIVIATD--DEKLNNKIR 103 (223)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHH-HHHhCCCEEEEeCCCChHHhCCCcEEEECCC--CHHHHHHHH
Confidence 4788888887766555556678888888887654321 1111 235555444421 134444455
Q ss_pred HHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhc
Q 023565 136 EILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKEN 198 (280)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~ 198 (280)
+.+++.+.. ++--++|..-. + +.+-+. +-+-+.++++|||..-.+++.+|+.
T Consensus 104 ~~a~~~~~l--vn~vd~p~~~d--F--i~PAiv-----~rg~l~IaIST~G~sP~lar~lR~~ 155 (223)
T PRK05562 104 KHCDRLYKL--YIDCSDYKKGL--C--IIPYQR-----STKNFVFALNTKGGSPKTSVFIGEK 155 (223)
T ss_pred HHHHHcCCe--EEEcCCcccCe--E--EeeeEE-----ecCCEEEEEECCCcCcHHHHHHHHH
Confidence 555554222 22223332110 0 000111 1244788888888888888887754
No 368
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=44.66 E-value=2.5e+02 Score=25.74 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=33.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
+|...+.||.|.++|...+..|++++++.+..... ....+..|.++
T Consensus 19 tIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s--~~~A~~~G~~~ 64 (330)
T PRK05479 19 KVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKS--WKKAEADGFEV 64 (330)
T ss_pred EEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhh--HHHHHHCCCee
Confidence 47777889999999999999999888776653322 22345567653
No 369
>PRK07791 short chain dehydrogenase; Provisional
Probab=44.64 E-value=2e+02 Score=25.21 Aligned_cols=72 Identities=13% Similarity=0.163 Sum_probs=42.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC----------CCHHHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHH
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST----------CSMERRIVLRALGAEIILADSA-LRFEEILEKGEEI 137 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~----------~~~~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~a~~~ 137 (280)
.+-+|+..++.-|.++|......|.+++++-... ........++..|.++..+..+ .+.++..+...+.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAA 86 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHH
Confidence 4558888889999999999999999877664221 1112334455567776554321 2333333334444
Q ss_pred HHh
Q 023565 138 LKK 140 (280)
Q Consensus 138 ~~~ 140 (280)
.++
T Consensus 87 ~~~ 89 (286)
T PRK07791 87 VET 89 (286)
T ss_pred HHh
Confidence 443
No 370
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=44.60 E-value=31 Score=27.19 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=26.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~ 102 (280)
++.+++|.-+.+++..++.+|++++++=|..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 4678899999999999999999999998874
No 371
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=44.56 E-value=1.7e+02 Score=31.12 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=28.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 101 (280)
..|+..++|-.|.+.|...++.|++++||=..
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~ 462 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEAL 462 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 35999999999999999999999999998644
No 372
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=44.46 E-value=1.7e+02 Score=29.37 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=38.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC---------C---------HHHHHHHHHCCCEEEE
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC---------S---------MERRIVLRALGAEIIL 120 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~---------~---------~~~~~~l~~~Ga~v~~ 120 (280)
..|+..++|-.|.+.|...++.|.+++||=.... + ......++.+|.++..
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~ 396 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL 396 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC
Confidence 4599999999999999999999999888853321 1 1235667788987764
No 373
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=44.35 E-value=69 Score=29.71 Aligned_cols=42 Identities=12% Similarity=0.005 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCH--H-HH--HHHHHCCCEEEEEC
Q 023565 81 GVGLAFIAAARGYNLIIVMPSTCSM--E-RR--IVLRALGAEIILAD 122 (280)
Q Consensus 81 g~alA~~a~~~G~~~~ivvp~~~~~--~-~~--~~l~~~Ga~v~~~~ 122 (280)
+.++-..|...|....|++.++.|. . ++ ..+...|-.+.++.
T Consensus 180 al~vi~~A~~~gk~~~V~v~EtRP~~qG~rlta~eL~~~GI~vtlI~ 226 (356)
T PRK08334 180 VGAVLRVMHKDGTLKLLWVDETRPVLQGARLSAWEYHYDGIPLKLIS 226 (356)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCchhhHHHHHHHHHHHCCCCEEEEe
Confidence 3344444555565555565555442 1 22 23455565555554
No 374
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=44.27 E-value=2.2e+02 Score=27.85 Aligned_cols=104 Identities=28% Similarity=0.306 Sum_probs=65.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ 149 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (280)
+++...+-|+-|+++|..++.+|++++.+=|.. +..+ ...+|.+.. + .+ ++.++. +...++-
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~~---~~~~g~~~~--~----l~-------ell~~a-DiV~l~l 202 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPER---AAQLGVELV--S----LD-------ELLARA-DFITLHT 202 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-ChhH---HHhcCCEEE--c----HH-------HHHhhC-CEEEEcc
Confidence 357778889999999999999999988776542 2222 234565432 1 22 233333 4444433
Q ss_pred CCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhHH--HHHHHHHh
Q 023565 150 FENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVT--GAGRFLKE 197 (280)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~--Gi~~~~k~ 197 (280)
-.++.+ ...+..|.++++ +++.+++-++.|+..- .+..++++
T Consensus 203 P~t~~t----~~li~~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 203 PLTPET----RGLIGAEELAKM--KPGVRIINCARGGIIDEAALAEALKS 246 (526)
T ss_pred CCChHh----hcCcCHHHHhcC--CCCeEEEECCCCceeCHHHHHHHHhc
Confidence 223222 334556888888 4689999999999864 44445544
No 375
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=44.11 E-value=2.3e+02 Score=26.18 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=39.3
Q ss_pred CcEEEEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHH--HHHHHHHHHHHhCCCeEE-cCCC-CCCccHHHHHHhHHHHH
Q 023565 93 YNLIIVMPSTCSMERRIVLRALGA-EIILADSALRFE--EILEKGEEILKKTPDGYL-LRQF-ENPANPKIHYETTGPEI 167 (280)
Q Consensus 93 ~~~~ivvp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~--~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~g~~t~~~Ei 167 (280)
.|..++.-.+.-...-..++.+|. ++.++.+. ... ...+...+..++.+-.+. .+.. .||.. ....|+
T Consensus 3 ~p~~i~~G~g~l~~l~~~l~~~~~~~~livt~~-~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~------~~v~~~ 75 (376)
T cd08193 3 TPPRIVFGAGSLARLGELLAALGAKRVLVVTDP-GILKAGLIDPLLASLEAAGIEVTVFDDVEADPPE------AVVEAA 75 (376)
T ss_pred CCCeEEECcCHHHHHHHHHHHcCCCeEEEEcCc-chhhCccHHHHHHHHHHcCCeEEEECCCCCCcCH------HHHHHH
Confidence 345555555544444455666663 44444322 122 134444444444321122 1211 22221 122334
Q ss_pred HHhhC-CCCCEEEEecCCchhH
Q 023565 168 WQDSG-GKVDAFISGIGTGGTV 188 (280)
Q Consensus 168 ~~q~~-~~~d~vv~~vG~Gg~~ 188 (280)
.++.. .++| .|+++|||+.+
T Consensus 76 ~~~~~~~~~D-~IIaiGGGs~i 96 (376)
T cd08193 76 VEAARAAGAD-GVIGFGGGSSM 96 (376)
T ss_pred HHHHHhcCCC-EEEEeCCchHH
Confidence 44432 2577 67889887654
No 376
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=43.96 E-value=2e+02 Score=27.92 Aligned_cols=84 Identities=17% Similarity=0.195 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCeEEEEeCC-ChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-HCCCEEEEECCC
Q 023565 47 VKDRIAYSMIKDAEDKGLITPGKTTLIEVTS-GNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR-ALGAEIILADSA 124 (280)
Q Consensus 47 ~K~R~a~~~l~~a~~~g~~~~g~~~vv~~Ss-GN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~-~~Ga~v~~~~~~ 124 (280)
+++..+...+..|.+.+. +.||++|. |.+++.++.+ +-..|.+++.+.. ...+++. .+|..-+.++..
T Consensus 359 ~~~aia~sAv~~A~~l~a-----kaIVv~T~SG~TA~~lS~~--RP~~pIiavT~~~---~~~r~l~l~~GV~p~~~~~~ 428 (480)
T cd00288 359 TTEAVAMSAVRAAFELGA-----KAIVVLTTSGRTARLVSKY--RPNAPIIAVTRNE---QTARQLHLYRGVYPVLFEEP 428 (480)
T ss_pred hHHHHHHHHHHHHHhcCC-----CEEEEECCCcHHHHHHHhh--CCCCCEEEEcCCH---HHhhheeeccCcEEEEeccc
Confidence 455555555555655543 23555544 8877666554 4456777776652 2222222 357766666532
Q ss_pred -----CCHHHHHHHHHHHHHh
Q 023565 125 -----LRFEEILEKGEEILKK 140 (280)
Q Consensus 125 -----~~~~~~~~~a~~~~~~ 140 (280)
.+.++....+.+.+.+
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~ 449 (480)
T cd00288 429 KPGWQEDTDARLKAAVNVAKE 449 (480)
T ss_pred ccccCCCHHHHHHHHHHHHHH
Confidence 2334445555555444
No 377
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=43.93 E-value=2.4e+02 Score=26.19 Aligned_cols=14 Identities=21% Similarity=0.456 Sum_probs=9.4
Q ss_pred CCCEEEEecCCchhH
Q 023565 174 KVDAFISGIGTGGTV 188 (280)
Q Consensus 174 ~~d~vv~~vG~Gg~~ 188 (280)
++| +|+++|||+.+
T Consensus 84 ~~D-~IIaiGGGS~i 97 (383)
T cd08186 84 GAQ-AVIAIGGGSPI 97 (383)
T ss_pred CCC-EEEEeCCccHH
Confidence 467 47788877643
No 378
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=43.77 E-value=1.1e+02 Score=28.03 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=36.0
Q ss_pred EEEeCC-ChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHH----HCCCEEEEEC
Q 023565 72 LIEVTS-GNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIVLR----ALGAEIILAD 122 (280)
Q Consensus 72 vv~~Ss-GN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~l~----~~Ga~v~~~~ 122 (280)
|+-.+. .|.++++..+++++|+.++++.|+.- +...+..++ ..|.++...+
T Consensus 157 v~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 214 (338)
T PRK02255 157 VVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTD 214 (338)
T ss_pred EEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEc
Confidence 444444 68899999999999999999999863 333443333 4688887665
No 379
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=43.72 E-value=1.6e+02 Score=26.30 Aligned_cols=52 Identities=29% Similarity=0.439 Sum_probs=35.5
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcC-CcEEEEeCCCCCHHHHHHHHHCCCE
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARG-YNLIIVMPSTCSMERRIVLRALGAE 117 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G-~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (280)
...+++|.+-+| .++|..|.+++..|+.+| .++++ +. .++.+...++.+|++
T Consensus 161 ~~~~~~g~~vlI-~g~g~~g~~~~~~a~~~G~~~v~~-~~--~~~~~~~~~~~~g~~ 213 (345)
T cd08286 161 NGKVKPGDTVAI-VGAGPVGLAALLTAQLYSPSKIIM-VD--LDDNRLEVAKKLGAT 213 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCeEEE-Ec--CCHHHHHHHHHhCCC
Confidence 334566667556 456999999999999999 55433 32 245667777788874
No 380
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=43.70 E-value=2.2e+02 Score=26.11 Aligned_cols=56 Identities=29% Similarity=0.306 Sum_probs=37.8
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHC-CCEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRAL-GAEII 119 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~-Ga~v~ 119 (280)
+...+.+|.+ |+...+|-.|.+++..|+.+|.+.++++..+ +.+.+.++.+ |++++
T Consensus 178 ~~~~~~~g~~-VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~--~~~~~~~~~~~~~~vi 234 (386)
T cd08283 178 ELAEVKPGDT-VAVWGCGPVGLFAARSAKLLGAERVIAIDRV--PERLEMARSHLGAETI 234 (386)
T ss_pred hhccCCCCCE-EEEECCCHHHHHHHHHHHHcCCCEEEEEcCC--HHHHHHHHHcCCcEEE
Confidence 3445667766 4444678889999999999998644544332 5777788777 65543
No 381
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=43.69 E-value=2.1e+02 Score=24.63 Aligned_cols=54 Identities=26% Similarity=0.313 Sum_probs=36.3
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEE
Q 023565 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEII 119 (280)
Q Consensus 63 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~ 119 (280)
+.+.+|.+-+|...+|..|.+++..++..|.++++..+. +.+.+.++.+|++-+
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 193 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGADAV 193 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEE
Confidence 455666665666657899999999999999876555432 355555666776433
No 382
>PRK07806 short chain dehydrogenase; Provisional
Probab=43.59 E-value=2e+02 Score=24.17 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=35.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|.-|.+++......|.+++++...... ......++..|.++..+.
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~ 62 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVG 62 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEE
Confidence 355788888999999999988899988776543211 112233455676665543
No 383
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=43.52 E-value=2.6e+02 Score=25.54 Aligned_cols=128 Identities=23% Similarity=0.217 Sum_probs=74.7
Q ss_pred EEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHHH--HHHHHHHHHHhCCCe-EEcC
Q 023565 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGA-EIILADSALRFEE--ILEKGEEILKKTPDG-YLLR 148 (280)
Q Consensus 73 v~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~~--~~~~a~~~~~~~~~~-~~~~ 148 (280)
++++|+|.-.-+-++ ++-+-++|.|+..-...+. +..|. +|+..++.=..-+ ..+...++.++.|+. +.+|
T Consensus 142 i~cTSsNAvkvVe~~---~~~~~Iif~PD~~Lg~yva--~~tg~k~ii~w~G~C~VH~~ft~~~i~~~k~~~Pda~vlvH 216 (324)
T COG0379 142 ICCTSSNAVKVVESA---LDGDKILFLPDKNLGRYVA--KQTGAKKIILWPGHCIVHEEFTAEDIEELKEKYPDAEVLVH 216 (324)
T ss_pred eEEecchHHHHHHhc---cCCCcEEEcCcHHHHHHHH--HHcCCCcEEEECCccchhhhcCHHHHHHHHHHCCCCEEEEC
Confidence 467788886666555 7778899999854333333 45677 8988875211111 122334444556654 5667
Q ss_pred CCCCCccHHH--HHHhHH--HHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCC
Q 023565 149 QFENPANPKI--HYETTG--PEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212 (280)
Q Consensus 149 ~~~~~~~~~~--g~~t~~--~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~ 212 (280)
|--.+..... .-++++ .+..++. +.+.+++. |=.|+..-++...|+.+++-..+.++
T Consensus 217 PEC~~~Vv~~AD~vGST~~ii~~~~~~--~~~~~iv~-----TE~g~~~~l~~~~P~k~~~~~~~~~~ 277 (324)
T COG0379 217 PECPPEVVELADFVGSTSQIIKAVKAS--PAQKFIVG-----TERGIVHRLQKEAPDKEFIPLPTAGA 277 (324)
T ss_pred CCCCHHHHHhccccccHHHHHHHHhcC--CCceEEEE-----ecHHHHHHHHHHCCCCeEEccCCCCC
Confidence 7544443321 112232 2333332 34555554 45678888999999999988888753
No 384
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=43.51 E-value=2e+02 Score=24.71 Aligned_cols=52 Identities=31% Similarity=0.360 Sum_probs=33.5
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEE
Q 023565 64 LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118 (280)
Q Consensus 64 ~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v 118 (280)
.+.++.+-+|...+|..|.+++..++..|.+++++.+ +..+...++.+|++.
T Consensus 136 ~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 187 (323)
T cd05276 136 GLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAG---SEEKLEACRALGADV 187 (323)
T ss_pred CCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHcCCCE
Confidence 4556666555555688888888888888887544433 234555556677643
No 385
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=43.40 E-value=1.5e+02 Score=27.31 Aligned_cols=86 Identities=14% Similarity=0.181 Sum_probs=40.0
Q ss_pred EEEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHH-HHHHHHHHHHHhCCCeEE-cCCC-CCCccHHHHHHhHHHHHHHhh
Q 023565 96 IIVMPSTCSMERRIVLRALGA-EIILADSALRFE-EILEKGEEILKKTPDGYL-LRQF-ENPANPKIHYETTGPEIWQDS 171 (280)
Q Consensus 96 ~ivvp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~g~~t~~~Ei~~q~ 171 (280)
.++.-++.-......++.+|. ++.++.+....+ ...+...+..++.+-.+. .... .||.. ....++.+++
T Consensus 3 ~i~~G~g~l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~------~~v~~~~~~~ 76 (370)
T cd08551 3 RIIFGAGAIEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTL------SNVDAAVAAY 76 (370)
T ss_pred eEEECcCHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCH------HHHHHHHHHH
Confidence 344444444445556666774 555554322222 344455555554422222 1122 23322 2233444444
Q ss_pred C-CCCCEEEEecCCchhH
Q 023565 172 G-GKVDAFISGIGTGGTV 188 (280)
Q Consensus 172 ~-~~~d~vv~~vG~Gg~~ 188 (280)
. .++|. |+++|||+.+
T Consensus 77 ~~~~~d~-IiaiGGGs~~ 93 (370)
T cd08551 77 REEGCDG-VIAVGGGSVL 93 (370)
T ss_pred HhcCCCE-EEEeCCchHH
Confidence 2 25775 7788887654
No 386
>PRK06949 short chain dehydrogenase; Provisional
Probab=43.32 E-value=1.6e+02 Score=24.82 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=26.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 101 (280)
.+-+|+..+|.-|.++|......|.+++++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 455788888999999999999999987666543
No 387
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=43.23 E-value=1.8e+02 Score=27.02 Aligned_cols=51 Identities=25% Similarity=0.201 Sum_probs=33.0
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHHC
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGY--NLIIVMPSTCSMERRIVLRAL 114 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~--~~~ivvp~~~~~~~~~~l~~~ 114 (280)
...+++|.+.+|...+|--|......|+.+|. ..++++ ..++.|++.++.+
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~ 222 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRL 222 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHh
Confidence 34566776645554579999998888998875 223333 2345677777775
No 388
>PRK12414 putative aminotransferase; Provisional
Probab=43.22 E-value=2.7e+02 Score=25.59 Aligned_cols=51 Identities=14% Similarity=0.031 Sum_probs=30.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
++..++|..+..++..+- +.-.-.|+++...-..-...++.+|++++.++.
T Consensus 93 i~it~g~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 143 (384)
T PRK12414 93 VTVIASASEGLYAAISAL-VHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKL 143 (384)
T ss_pred EEEECChHHHHHHHHHHh-cCCCCEEEEeCCCccchHHHHHHcCCEEEEEec
Confidence 777777888776665543 222233444443323345556778999988864
No 389
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=43.21 E-value=1.6e+02 Score=27.08 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=39.1
Q ss_pred cEEEEeCCCCCHHHHHHHHHCCC-EEEEECCCCCHH-HHHHHHHHHHHhCCCeEE-cCCC-CCCccHHHHHHhHHHHHHH
Q 023565 94 NLIIVMPSTCSMERRIVLRALGA-EIILADSALRFE-EILEKGEEILKKTPDGYL-LRQF-ENPANPKIHYETTGPEIWQ 169 (280)
Q Consensus 94 ~~~ivvp~~~~~~~~~~l~~~Ga-~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~g~~t~~~Ei~~ 169 (280)
|..++.-++.-...-..++.+|. ++.++.+....+ ...++..+..++.+-.+. .+.. .||.. ....|+.+
T Consensus 2 p~~i~~G~g~~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~------~~v~~~~~ 75 (370)
T cd08192 2 PTRIRFGAGAIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTE------AAVEAGLA 75 (370)
T ss_pred CceEEECcCHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCH------HHHHHHHH
Confidence 34455555444444455666774 555553321111 134445554444321222 2221 22221 12334444
Q ss_pred hhC-CCCCEEEEecCCchhH
Q 023565 170 DSG-GKVDAFISGIGTGGTV 188 (280)
Q Consensus 170 q~~-~~~d~vv~~vG~Gg~~ 188 (280)
+.. .++|. |+++|||+.+
T Consensus 76 ~~~~~~~d~-IIaiGGGSvi 94 (370)
T cd08192 76 AYRAGGCDG-VIAFGGGSAL 94 (370)
T ss_pred HHHhcCCCE-EEEeCCchHH
Confidence 442 35675 6788887654
No 390
>PRK07324 transaminase; Validated
Probab=43.15 E-value=1.1e+02 Score=28.14 Aligned_cols=51 Identities=12% Similarity=0.010 Sum_probs=33.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
|+..+++..|..++..+- ++-.-.|+++...-..-...++.+|++++.++-
T Consensus 83 vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~ 133 (373)
T PRK07324 83 ILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQL 133 (373)
T ss_pred EEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEec
Confidence 777777777777666553 332334555554444555677889999998874
No 391
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=42.99 E-value=2.1e+02 Score=26.30 Aligned_cols=39 Identities=21% Similarity=0.104 Sum_probs=26.9
Q ss_pred HHHHHcCCcEEEEeCCCC------------CHHHHHHHHHCCCEEEEECCC
Q 023565 86 FIAAARGYNLIIVMPSTC------------SMERRIVLRALGAEIILADSA 124 (280)
Q Consensus 86 ~~a~~~G~~~~ivvp~~~------------~~~~~~~l~~~Ga~v~~~~~~ 124 (280)
..|...++|+++|+-.+- .+.-....+.||...+.|++.
T Consensus 179 n~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~ 229 (341)
T CHL00149 179 NMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGM 229 (341)
T ss_pred HHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCC
Confidence 346778999888875543 122355667888888888865
No 392
>PRK07454 short chain dehydrogenase; Provisional
Probab=42.83 E-value=2e+02 Score=24.04 Aligned_cols=53 Identities=25% Similarity=0.253 Sum_probs=34.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEEC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 122 (280)
+-+|+.++|..|.+++......|.+++++...... ......++..+.++..+.
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYS 61 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 44788888999999999999999987776543211 122233445566664443
No 393
>PRK10537 voltage-gated potassium channel; Provisional
Probab=42.83 E-value=2.9e+02 Score=25.94 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=37.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~ 124 (280)
.+++.++.|+.|+.++-.-+..|.+++++.++ +.+.....|.+++.-|++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d-----~~~~~~~~g~~vI~GD~t 290 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPL-----GLEHRLPDDADLIPGDSS 290 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECc-----hhhhhccCCCcEEEeCCC
Confidence 45999999999999999888889999888865 123334457777766653
No 394
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=42.63 E-value=2.4e+02 Score=26.81 Aligned_cols=53 Identities=19% Similarity=0.107 Sum_probs=38.4
Q ss_pred EEEEeCCChHHHHHHHHHHH------cCC--cEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 71 TLIEVTSGNTGVGLAFIAAA------RGY--NLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~------~G~--~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
.++..+||..+..+|..+.. .++ .-.|++|..+-......+..+|++++.++-
T Consensus 80 ~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdv 140 (438)
T PRK15407 80 YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDV 140 (438)
T ss_pred eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEec
Confidence 37778888888777776541 133 346778877777777788889999998874
No 395
>PRK06202 hypothetical protein; Provisional
Probab=42.60 E-value=37 Score=28.93 Aligned_cols=38 Identities=16% Similarity=0.367 Sum_probs=29.2
Q ss_pred CCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCC
Q 023565 175 VDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212 (280)
Q Consensus 175 ~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~ 212 (280)
...+=+++|+|....-++...+...++.+|+||++...
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~ 99 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR 99 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence 35666788888877777776666778889999999654
No 396
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=42.58 E-value=2.4e+02 Score=24.83 Aligned_cols=56 Identities=32% Similarity=0.468 Sum_probs=38.0
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
.+.+.++.+-+| ..+|..|.+++..|+.+|.++++..+ ++.+.+.++.+|++-+..
T Consensus 160 ~~~~~~~~~vli-~g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~~~ 215 (338)
T cd08254 160 AGEVKPGETVLV-IGLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEVLN 215 (338)
T ss_pred ccCCCCCCEEEE-ECCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEEEc
Confidence 444667666555 45688899999999999988544432 356667777788754443
No 397
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=42.43 E-value=1.1e+02 Score=27.28 Aligned_cols=52 Identities=25% Similarity=0.254 Sum_probs=36.0
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 65 ~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+.+|.+-+| ...|..|.+++..|+.+|++++++.+. +.+...++.+|++-++
T Consensus 167 ~~~g~~vlV-~g~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGV-VGIGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEE-ECCcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEe
Confidence 566666555 457899999999999999875554332 3566666778876443
No 398
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=42.32 E-value=1.6e+02 Score=27.20 Aligned_cols=51 Identities=12% Similarity=-0.046 Sum_probs=30.0
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
|+..+++..+..++..+- ..-.-.|+++.-.-..-....+.+|++++.++.
T Consensus 106 I~~t~Ga~~~i~~~~~~~-~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~ 156 (380)
T PLN03026 106 ILVGCGADELIDLLMRCV-LDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPR 156 (380)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCEEEEeec
Confidence 666666666666555432 221234555543334444556789999998864
No 399
>PRK06290 aspartate aminotransferase; Provisional
Probab=42.19 E-value=2.9e+02 Score=25.77 Aligned_cols=51 Identities=8% Similarity=-0.015 Sum_probs=33.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
|+..+|+..+..++..+-. +-.-.|++|.-.-..-...++.+|++++.++-
T Consensus 109 I~it~Gs~~al~~~~~~~~-~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~ 159 (410)
T PRK06290 109 VIHSIGSKPALAMLPSCFI-NPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPL 159 (410)
T ss_pred EEEccCHHHHHHHHHHHhC-CCCCEEEEeCCCCccHHHHHHHcCCEEEEEec
Confidence 7777777887766655432 22234555554444556677889999999874
No 400
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=42.15 E-value=3e+02 Score=25.90 Aligned_cols=126 Identities=21% Similarity=0.262 Sum_probs=67.5
Q ss_pred EEEeCCCh-HHHHHHHHHHHcCCcEEEEeCC-CCC----HHHHHHHHHCCC-EEEEECCCCCHHHHH-HHHHHHHHhCCC
Q 023565 72 LIEVTSGN-TGVGLAFIAAARGYNLIIVMPS-TCS----MERRIVLRALGA-EIILADSALRFEEIL-EKGEEILKKTPD 143 (280)
Q Consensus 72 vv~~SsGN-~g~alA~~a~~~G~~~~ivvp~-~~~----~~~~~~l~~~Ga-~v~~~~~~~~~~~~~-~~a~~~~~~~~~ 143 (280)
|+.+|+|= +...+.+...+.+.+++.|.-+ +.+ ....++...+|| +++.+|.. ++.. +.+....+. +
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r---~ef~~~~i~~aI~a--n 75 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDAR---DEFAEDYIFPAIKA--N 75 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-H---HHHHHHTHHHHHHT--T
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchH---HHHHHHHHHHHHHH--H
Confidence 45677764 4455566666666888888632 333 334555677999 99999843 2322 222233332 3
Q ss_pred eEEcCCCCC---CccHHHHHHhHHHHHHHhhCCCCCEEEEe-cCCchhHHHHHHHHHhcCCCcEEEE
Q 023565 144 GYLLRQFEN---PANPKIHYETTGPEIWQDSGGKVDAFISG-IGTGGTVTGAGRFLKENNPDIKVYG 206 (280)
Q Consensus 144 ~~~~~~~~~---~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~-vG~Gg~~~Gi~~~~k~~~p~~~vig 206 (280)
..|-..|-. -..+. .+....|+.++. ..++|.-. +|-|--..=.-.+++.+.|+.+|++
T Consensus 76 A~Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 76 ALYEGRYPLSTSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp --BTTTB--CCCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred HHhCCCccccccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence 444433311 12221 233445667776 46777774 5777777777778889999999875
No 401
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=42.12 E-value=59 Score=26.07 Aligned_cols=47 Identities=30% Similarity=0.323 Sum_probs=36.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
+|...+|+.|..++......|.++++++....+... .-+.+++..+-
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----~~~~~~~~~d~ 48 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----SPGVEIIQGDL 48 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----CTTEEEEESCT
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----ccccccceeee
Confidence 567778999999999999999999999977443333 56677776653
No 402
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=42.02 E-value=1.4e+02 Score=27.01 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=35.9
Q ss_pred EEEeCC-ChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHH----HHHCCCEEEEEC
Q 023565 72 LIEVTS-GNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIV----LRALGAEIILAD 122 (280)
Q Consensus 72 vv~~Ss-GN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~----l~~~Ga~v~~~~ 122 (280)
|...+. +|.+++++.+++++|+.++++.|+... +..... .+..|+++...+
T Consensus 151 v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 151 VVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred EEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 443333 789999999999999999999988642 333333 355788887665
No 403
>PLN02623 pyruvate kinase
Probab=42.00 E-value=3.7e+02 Score=26.83 Aligned_cols=123 Identities=11% Similarity=0.083 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCCcEEEEe---------CCC--CCHHHHHHHHHCCCEEEEECCC---CCHH-HHHHHHHHHHHhCCC-eE
Q 023565 82 VGLAFIAAARGYNLIIVM---------PST--CSMERRIVLRALGAEIILADSA---LRFE-EILEKGEEILKKTPD-GY 145 (280)
Q Consensus 82 ~alA~~a~~~G~~~~ivv---------p~~--~~~~~~~~l~~~Ga~v~~~~~~---~~~~-~~~~~a~~~~~~~~~-~~ 145 (280)
.-+...|+..|.++.+.. |.. +...-+......|++.+..... +.|. ++.+.-.+.+++-.. ..
T Consensus 366 k~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~ 445 (581)
T PLN02623 366 EEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLP 445 (581)
T ss_pred HHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcc
Confidence 345567899999988643 322 2234667777789999888642 2232 444443333321111 11
Q ss_pred E--c----CCCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCC
Q 023565 146 L--L----RQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212 (280)
Q Consensus 146 ~--~----~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~ 212 (280)
+ . ....+. ....-....+.++.+.++ .. ||+.+-+|.++.- +....|.++|+++.+...
T Consensus 446 ~~~~~~~~~~~~~~-~~~~~ia~sA~~~A~~l~--a~-Ivv~T~sG~tA~~----lSr~RP~~pI~avT~~~~ 510 (581)
T PLN02623 446 EGTTPPNLGQAFKN-HMSEMFAFHATMMANTLG--TS-IIVFTRTGFMAIL----LSHYRPSGTIFAFTNEKR 510 (581)
T ss_pred cchhhhhhccccCC-ChHHHHHHHHHHHHHhcC--Cc-EEEECCCcHHHHH----HHhhCCCCCEEEECCCHH
Confidence 1 0 011111 111234455567777773 34 8999989888644 445579999999997654
No 404
>PTZ00377 alanine aminotransferase; Provisional
Probab=41.96 E-value=3.2e+02 Score=26.13 Aligned_cols=53 Identities=9% Similarity=0.049 Sum_probs=36.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
.|+..+++.++..++..+-..+-.-.|++|.-.-+.-...++.+|++++.++-
T Consensus 140 ~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P~y~~y~~~~~~~g~~~v~v~~ 192 (481)
T PTZ00377 140 DIFLTDGASSGIKLLLQLLIGDPSDGVMIPIPQYPLYSAAITLLGGKQVPYYL 192 (481)
T ss_pred hEEEcCCHHHHHHHHHHHhccCCCCEEEECCCCchhHHHHHHHcCCEEEEEEe
Confidence 47878888887777766543122235666665556667778889999988863
No 405
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=41.89 E-value=2.3e+02 Score=26.23 Aligned_cols=65 Identities=12% Similarity=0.043 Sum_probs=42.2
Q ss_pred CC-ChHHHHHHHH--HHHcCCcEEEEeC-----C-C-CCH------HHHHHHHHCCCEEEEECCC-CCHHHHHHHHHHHH
Q 023565 76 TS-GNTGVGLAFI--AAARGYNLIIVMP-----S-T-CSM------ERRIVLRALGAEIILADSA-LRFEEILEKGEEIL 138 (280)
Q Consensus 76 Ss-GN~g~alA~~--a~~~G~~~~ivvp-----~-~-~~~------~~~~~l~~~Ga~v~~~~~~-~~~~~~~~~a~~~~ 138 (280)
|+ ||.--.|+.. ...+++|+.+++. . . .++ .....++.+|-.....+.+ .+..+.++.+.+.+
T Consensus 60 SGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~ 139 (361)
T TIGR03297 60 SGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGRITLSLLDALEIPWEVLSTDNDEALAQIERALAHA 139 (361)
T ss_pred CchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHHhHHHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHH
Confidence 55 8988888766 5779999999982 1 1 232 2367789999988888532 22334555555554
Q ss_pred Hh
Q 023565 139 KK 140 (280)
Q Consensus 139 ~~ 140 (280)
.+
T Consensus 140 ~~ 141 (361)
T TIGR03297 140 LA 141 (361)
T ss_pred HH
Confidence 33
No 406
>PRK07814 short chain dehydrogenase; Provisional
Probab=41.86 E-value=2e+02 Score=24.57 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=34.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEE
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILA 121 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~ 121 (280)
.+-+|+.++|--|.+++......|.+++++...... ......++..|.++..+
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~ 64 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVV 64 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE
Confidence 456888888999999999888899977666543111 12233344456555443
No 407
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=41.85 E-value=2.1e+02 Score=24.22 Aligned_cols=53 Identities=17% Similarity=0.195 Sum_probs=34.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEE
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILA 121 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~ 121 (280)
.+-+|+..+|.-|.++|......|.+++++-..... ......++..|.++..+
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 65 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEAL 65 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEE
Confidence 455888888999999999888889987776543211 12233455567555444
No 408
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=41.80 E-value=3.1e+02 Score=26.86 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=31.6
Q ss_pred HHHHhhC-CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEe
Q 023565 166 EIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVE 208 (280)
Q Consensus 166 Ei~~q~~-~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe 208 (280)
|.+++.+ .+.|.+++.++.--.-.-+....++.+|+.+|++-.
T Consensus 472 ~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 472 EIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred HHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 5555553 368999999887665555667778889999998764
No 409
>PRK05866 short chain dehydrogenase; Provisional
Probab=41.74 E-value=1.9e+02 Score=25.42 Aligned_cols=52 Identities=17% Similarity=0.101 Sum_probs=34.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEE
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILA 121 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~ 121 (280)
+-+|+..+|.-|.++|......|.+++++...... ......++..|.++..+
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~ 94 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAV 94 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
Confidence 44888888999999999998899987776543211 12233344456665444
No 410
>PLN02477 glutamate dehydrogenase
Probab=41.58 E-value=2.2e+02 Score=26.97 Aligned_cols=52 Identities=17% Similarity=0.113 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHH-cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 023565 49 DRIAYSMIKDAED-KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (280)
Q Consensus 49 ~R~a~~~l~~a~~-~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 101 (280)
-||..+.+..+.+ .|. .....+|+..+-||-|+.+|......|.+++.|.+.
T Consensus 186 g~Gv~~~~~~~~~~~g~-~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 186 GRGVVFATEALLAEHGK-SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred hHHHHHHHHHHHHHcCC-CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 3677777776654 343 333355888889999999999998888887766654
No 411
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=41.57 E-value=1.1e+02 Score=27.37 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=42.7
Q ss_pred CC-ceEEEEeCCCCCCCchhhHHHHHHHHHHHHcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 023565 30 CV-ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (280)
Q Consensus 30 ~g-~~l~~K~E~~~ptGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~ 102 (280)
.| ++-..+.|+-.-.|-+.|=...........-+...+|. .++..++|-+++|++++....|.+-+.|+.++
T Consensus 87 iGAVNTl~~~~~g~l~G~NTD~~G~~~~L~~~~~~~~~~~~-~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt 159 (283)
T COG0169 87 IGAVNTLVREDDGKLRGYNTDGIGFLRALKEFGLPVDVTGK-RVLILGAGGAARAVAFALAEAGAKRITVVNRT 159 (283)
T ss_pred hCCceEEEEccCCEEEEEcCCHHHHHHHHHhcCCCcccCCC-EEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45 45444444455567777764443322221111222333 48888999999999999999997655555554
No 412
>PRK12828 short chain dehydrogenase; Provisional
Probab=41.42 E-value=2e+02 Score=23.70 Aligned_cols=55 Identities=22% Similarity=0.074 Sum_probs=38.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEECC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILADS 123 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~~ 123 (280)
.+-+|+.++|--|.+++......|.+++++.....+ ......+...+.+++..+-
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~ 63 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDL 63 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeec
Confidence 456888888999999999988889987666543221 2234445666777777764
No 413
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=41.26 E-value=2.1e+02 Score=28.18 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=29.5
Q ss_pred eEEEEeCCChHH---HHHHHHHHHcCCcEEEEeCCCCCHH----HHHHHHHCCCEE
Q 023565 70 TTLIEVTSGNTG---VGLAFIAAARGYNLIIVMPSTCSME----RRIVLRALGAEI 118 (280)
Q Consensus 70 ~~vv~~SsGN~g---~alA~~a~~~G~~~~ivvp~~~~~~----~~~~l~~~Ga~v 118 (280)
+-+|.++.||.| ..+|......|+++.|++|...... ....++.+|..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 446666666654 3455555667999999987643322 234556666543
No 414
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=41.24 E-value=2.6e+02 Score=25.63 Aligned_cols=50 Identities=14% Similarity=0.115 Sum_probs=33.4
Q ss_pred EEEeCCChHHHHHHHHHHHcCCc--EEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYN--LIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~--~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
.+..++|..|..++..+ ++++ -.|++|...-..-...++..|++++.++-
T Consensus 47 ~v~~~sgt~al~~~l~a--l~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~ 98 (380)
T TIGR03588 47 AVAFNSATSALHIACLA--LGVGPGDRVWTTPITFVATANCALYCGAKVDFVDI 98 (380)
T ss_pred EEEEcCHHHHHHHHHHH--cCCCCCCEEEeCCcchHHHHHHHHHcCCEEEEEec
Confidence 45556676665555544 4432 46777776666667778889999999874
No 415
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=41.22 E-value=1.4e+02 Score=27.02 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHcCCcEEEEeCCCCC
Q 023565 78 GNTGVGLAFIAAARGYNLIIVMPSTCS 104 (280)
Q Consensus 78 GN~g~alA~~a~~~G~~~~ivvp~~~~ 104 (280)
+|.++++..+++++|+.++++.|++.+
T Consensus 163 ~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 163 NNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred CcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 788888888888888888888888754
No 416
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=41.22 E-value=1.9e+02 Score=26.50 Aligned_cols=55 Identities=27% Similarity=0.460 Sum_probs=38.6
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 63 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+.+.+|++-+|. ..|..|.+++..|+.+|...++++.. ++.+...++.+|++-++
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~v 253 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYVF 253 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEEE
Confidence 456777775555 67999999999999999854444432 33477888889985443
No 417
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=41.14 E-value=1.5e+02 Score=26.92 Aligned_cols=51 Identities=16% Similarity=0.049 Sum_probs=29.7
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
|+..+++..+..+...+- .+-.-.|+++...-..-....+.+|++++.++.
T Consensus 87 i~~t~G~~~~l~~~~~~l-~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~ 137 (367)
T PRK02731 87 IILGNGSDEILELLARAY-LGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA 137 (367)
T ss_pred EEEcCCHHHHHHHHHHHh-cCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc
Confidence 666666666554443332 222345666654434444556789999998874
No 418
>PRK06197 short chain dehydrogenase; Provisional
Probab=41.13 E-value=2.5e+02 Score=24.68 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=22.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMP 100 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp 100 (280)
+.+|+.++|.-|.++|..-...|.+++++..
T Consensus 18 ~vlItGas~gIG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 18 VAVVTGANTGLGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 4577777788888888877777887666554
No 419
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=41.04 E-value=3.6e+02 Score=26.45 Aligned_cols=82 Identities=12% Similarity=0.022 Sum_probs=41.8
Q ss_pred CCCCchhhHHHHHHHHHHHHc-CCCCCC-CeEEEEeCCChHHHHHHHHHH----HcCCcEEEEeCCCCCHHHHH--HHHH
Q 023565 42 EPCSSVKDRIAYSMIKDAEDK-GLITPG-KTTLIEVTSGNTGVGLAFIAA----ARGYNLIIVMPSTCSMERRI--VLRA 113 (280)
Q Consensus 42 ~ptGS~K~R~a~~~l~~a~~~-g~~~~g-~~~vv~~SsGN~g~alA~~a~----~~G~~~~ivvp~~~~~~~~~--~l~~ 113 (280)
.|.|....|-+...-....+. +...+. ...|+..+++..|..++..+- .+.-.-.|+++.-.-+.-.. .+..
T Consensus 126 ~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~ 205 (521)
T TIGR03801 126 VPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPR 205 (521)
T ss_pred CCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhc
Confidence 367777766543221111121 222222 114888888999888877651 23222344444433222233 3455
Q ss_pred CCCEEEEECC
Q 023565 114 LGAEIILADS 123 (280)
Q Consensus 114 ~Ga~v~~~~~ 123 (280)
+|++++.++.
T Consensus 206 ~g~~vv~i~~ 215 (521)
T TIGR03801 206 YDFEVVRIKA 215 (521)
T ss_pred CCcEEEEeec
Confidence 7888887763
No 420
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=41.02 E-value=79 Score=29.78 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHH----HHHCCCEEEEEC
Q 023565 78 GNTGVGLAFIAAARGYNLIIVMPSTC--SMERRIV----LRALGAEIILAD 122 (280)
Q Consensus 78 GN~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~----l~~~Ga~v~~~~ 122 (280)
.|.+++++.++.++|++++++.|+.- .+..... .+..|..+...+
T Consensus 204 ~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~ 254 (395)
T PRK07200 204 LSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVN 254 (395)
T ss_pred chHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 37889999999999999999999864 3443333 456788887765
No 421
>PRK07890 short chain dehydrogenase; Provisional
Probab=40.88 E-value=2.1e+02 Score=24.16 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=34.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+.++|.-|+++|......|.+++++-..... +.....++..|.++..+.
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVP 60 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEe
Confidence 455888888999999999999999987666432111 122333444566654443
No 422
>PRK07035 short chain dehydrogenase; Provisional
Probab=40.81 E-value=2.2e+02 Score=23.96 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=34.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEE
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILA 121 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~ 121 (280)
+.+|+..+|.-|.+++......|.+++++-..... ....+.+...|.++..+
T Consensus 10 ~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~ 62 (252)
T PRK07035 10 IALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEAL 62 (252)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE
Confidence 45888888999999999999999987666532211 12233444556665444
No 423
>PLN02306 hydroxypyruvate reductase
Probab=40.77 E-value=2.1e+02 Score=26.77 Aligned_cols=119 Identities=18% Similarity=0.151 Sum_probs=67.1
Q ss_pred eEEEEeCCChHHHHHHHHHH-HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHHHHhCCCeEEc
Q 023565 70 TTLIEVTSGNTGVGLAFIAA-ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL-RFEEILEKGEEILKKTPDGYLL 147 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~-~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~ 147 (280)
+++-..+-|+-|+++|..++ .+|+++..+=|.. +.........+|..+...+... .+ .......++.++. +...+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~L~ell~~s-DiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-STRLEKFVTAYGQFLKANGEQPVTW-KRASSMEEVLREA-DVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCC-chhhhhhhhhhcccccccccccccc-cccCCHHHHHhhC-CEEEE
Confidence 45888888999999999974 8999877665432 2222222334443222111000 00 0001123334444 45544
Q ss_pred CCCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhHH--HHHHHHHh
Q 023565 148 RQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVT--GAGRFLKE 197 (280)
Q Consensus 148 ~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~--Gi~~~~k~ 197 (280)
+- |.+. .-++-+..|.++++ +++.+++-+|-|+++= .+..++++
T Consensus 243 h~---Plt~-~T~~lin~~~l~~M--K~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 243 HP---VLDK-TTYHLINKERLALM--KKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred eC---CCCh-hhhhhcCHHHHHhC--CCCeEEEECCCccccCHHHHHHHHHh
Confidence 32 2233 23456777889998 4789999999999863 44445544
No 424
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=40.72 E-value=1.2e+02 Score=31.08 Aligned_cols=51 Identities=24% Similarity=0.236 Sum_probs=38.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCc-EEEEeCCC---C--CHHHHHHHHHCCCEEEEE
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYN-LIIVMPST---C--SMERRIVLRALGAEIILA 121 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~-~~ivvp~~---~--~~~~~~~l~~~Ga~v~~~ 121 (280)
+||..++||.|.-+|..+.++|.+ ++++.... . ....+..++..|.+++..
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~ 628 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTL 628 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 499999999999999999999998 88887542 1 223345567778776543
No 425
>PRK09134 short chain dehydrogenase; Provisional
Probab=40.71 E-value=2.3e+02 Score=24.07 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=36.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM--ERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~--~~~~~l~~~Ga~v~~~~ 122 (280)
.+.+|+..+|.-|..++......|..++++...+.+. .-...++..|.++..+.
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQ 65 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 3558888889999999999999999887765432211 12233444577775543
No 426
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=40.70 E-value=1.8e+02 Score=26.56 Aligned_cols=101 Identities=18% Similarity=0.180 Sum_probs=59.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQF 150 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (280)
+|...+.|+.|.++|..++.+|.+++++-+.... .... +... .+. .++.++. +.+.++-
T Consensus 148 ~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~--~~~~-------~~~~---~~l-------~ell~~a-DiVil~l- 206 (330)
T PRK12480 148 TVAIIGTGRIGAATAKIYAGFGATITAYDAYPNK--DLDF-------LTYK---DSV-------KEAIKDA-DIISLHV- 206 (330)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhH--hhhh-------hhcc---CCH-------HHHHhcC-CEEEEeC-
Confidence 4778888999999999999999998887654211 1100 0011 112 2233333 4444322
Q ss_pred CCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 023565 151 ENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTV--TGAGRFLKE 197 (280)
Q Consensus 151 ~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~--~Gi~~~~k~ 197 (280)
|... .-...+..++++++ +++.+++-+|-|+.+ ..+..++++
T Consensus 207 --P~t~-~t~~li~~~~l~~m--k~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 207 --PANK-ESYHLFDKAMFDHV--KKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred --CCcH-HHHHHHhHHHHhcC--CCCcEEEEcCCccccCHHHHHHHHHc
Confidence 2222 22344567888877 468899999999876 344445543
No 427
>PRK05867 short chain dehydrogenase; Provisional
Probab=40.42 E-value=2.3e+02 Score=23.99 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=34.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEE
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILA 121 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~ 121 (280)
..-+|+.++|.-|.++|..-...|.+++++-.... .......++..|.++..+
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~ 63 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPV 63 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEE
Confidence 35578888899999999998889988666543211 112233445567666544
No 428
>PRK08265 short chain dehydrogenase; Provisional
Probab=40.36 E-value=2.3e+02 Score=24.14 Aligned_cols=51 Identities=20% Similarity=0.168 Sum_probs=33.0
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
.+.+|+..+|--|.++|......|.+++++-.. . ....+..+.++.++..+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~-~-~~~~~~~~~~~~~~~~~ 57 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDID-A-DNGAAVAASLGERARFI 57 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC-H-HHHHHHHHHhCCeeEEE
Confidence 355888888999999999999999977665332 1 11222334456665544
No 429
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=40.29 E-value=1.9e+02 Score=27.47 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHHcCCcEEEEeCCCC
Q 023565 78 GNTGVGLAFIAAARGYNLIIVMPSTC 103 (280)
Q Consensus 78 GN~g~alA~~a~~~G~~~~ivvp~~~ 103 (280)
|.+..+|+.+-+..|.++.|++|.-.
T Consensus 20 ~~~v~~L~~aL~~~G~~v~v~~p~y~ 45 (473)
T TIGR02095 20 ADVVGALPKALAALGHDVRVLLPAYG 45 (473)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 78888999999999999999999743
No 430
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=40.12 E-value=1.4e+02 Score=27.11 Aligned_cols=104 Identities=20% Similarity=0.172 Sum_probs=64.0
Q ss_pred eEEEEeCCChHHHHHHHHHH-HcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcC
Q 023565 70 TTLIEVTSGNTGVGLAFIAA-ARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLR 148 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~-~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (280)
+++-..+-|+-|+++|..++ .+|+++..+-|.. ++. ....+|.+. ++ ++ ++.++. +...++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~-~~~---~~~~~~~~~--~~----l~-------ell~~s-Dvv~lh 207 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRH-HKE---AEERFNARY--CD----LD-------TLLQES-DFVCII 207 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCC-chh---hHHhcCcEe--cC----HH-------HHHHhC-CEEEEe
Confidence 45777788999999999997 8999877554432 221 123445432 11 22 233443 455543
Q ss_pred CCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 023565 149 QFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTV--TGAGRFLKE 197 (280)
Q Consensus 149 ~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~--~Gi~~~~k~ 197 (280)
--.++. =.+-+..|.++++ +++.+++-++-|+.+ ..+..+++.
T Consensus 208 ~plt~~----T~~li~~~~l~~m--k~ga~lIN~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 208 LPLTDE----THHLFGAEQFAKM--KSSAIFINAGRGPVVDENALIAALQK 252 (323)
T ss_pred CCCChH----HhhccCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 322332 2345677888888 479999999999986 445555543
No 431
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=40.08 E-value=1.3e+02 Score=21.23 Aligned_cols=48 Identities=29% Similarity=0.317 Sum_probs=33.2
Q ss_pred EEEeCCChHHHHHHHHHHHcC---CcEEEEeCCCCCHHHHHHH-HHCCCEEEEE
Q 023565 72 LIEVTSGNTGVGLAFIAAARG---YNLIIVMPSTCSMERRIVL-RALGAEIILA 121 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G---~~~~ivvp~~~~~~~~~~l-~~~Ga~v~~~ 121 (280)
|..-++||.|.+++......| .++.++... ++++.+.+ +.++.++...
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r--~~~~~~~~~~~~~~~~~~~ 53 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSR--SPEKAAELAKEYGVQATAD 53 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES--SHHHHHHHHHHCTTEEESE
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccC--cHHHHHHHHHhhccccccC
Confidence 444588999999999999999 666655322 34555544 6788766653
No 432
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=40.06 E-value=1.4e+02 Score=27.22 Aligned_cols=51 Identities=24% Similarity=0.189 Sum_probs=38.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCc-EEEEeCCC-----CCHHHHHHHHHCCCEEEEE
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYN-LIIVMPST-----CSMERRIVLRALGAEIILA 121 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~-~~ivvp~~-----~~~~~~~~l~~~Ga~v~~~ 121 (280)
.++..++|+.|.-+|......|.+ ++++.... .....+..++..|.+++.-
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~ 230 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLEL 230 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeec
Confidence 499999999999999888888997 88886532 1234456677888777654
No 433
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=40.05 E-value=2.4e+02 Score=25.56 Aligned_cols=50 Identities=28% Similarity=0.336 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCC
Q 023565 64 LITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGA 116 (280)
Q Consensus 64 ~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga 116 (280)
.+.++.+-+|. .+|..|.+++..|+.+|.+.++++.. ++.+...++.+|+
T Consensus 184 ~~~~g~~VlI~-g~g~vG~~~~~lak~~G~~~vi~~~~--s~~~~~~~~~~g~ 233 (367)
T cd08263 184 DVRPGETVAVI-GVGGVGSSAIQLAKAFGASPIIAVDV--RDEKLAKAKELGA 233 (367)
T ss_pred cCCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCC
Confidence 34555564554 57888888888888888873343322 2345555566665
No 434
>PRK08361 aspartate aminotransferase; Provisional
Probab=39.86 E-value=1.8e+02 Score=26.72 Aligned_cols=52 Identities=13% Similarity=0.010 Sum_probs=32.9
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
.|+..+|+..+..++..+- ..-.-.|++|...-..-...++..|++++.++-
T Consensus 95 ~i~~t~G~~~al~~~~~~l-~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 146 (391)
T PRK08361 95 NVIVTAGAYEATYLAFESL-LEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPL 146 (391)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCcccHHHHHHcCCEEEEEec
Confidence 3777777777766655443 232345666654444455677789999988863
No 435
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=39.84 E-value=2.3e+02 Score=23.82 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=36.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|..|.++|..-...|.+++++.....+ ......++..+.++..+.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 59 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVA 59 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 355888888999999999988889988776544222 222344555677765443
No 436
>PRK06194 hypothetical protein; Provisional
Probab=39.77 E-value=2.5e+02 Score=24.25 Aligned_cols=53 Identities=26% Similarity=0.274 Sum_probs=35.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHCCCEEEEEC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILAD 122 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~~~~~~~l~~~Ga~v~~~~ 122 (280)
+-+|+..+|.-|.++|......|.+++++-.... .......+...|.++..+.
T Consensus 8 ~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 61 (287)
T PRK06194 8 VAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVR 61 (287)
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEE
Confidence 4588888899999999998889998766543211 1223344455577775554
No 437
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=39.64 E-value=3.8e+02 Score=26.38 Aligned_cols=59 Identities=22% Similarity=0.181 Sum_probs=47.7
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 65 ~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
+++|+...+.+.-.-+-..++++|...|..+.-+=|..++.+...+++.-.+++++++.
T Consensus 69 i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~ 127 (537)
T KOG1176|consen 69 IKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDE 127 (537)
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcC
Confidence 44555434444446677888899999999888888888999999999999999999995
No 438
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=39.60 E-value=2.7e+02 Score=24.66 Aligned_cols=53 Identities=34% Similarity=0.406 Sum_probs=33.8
Q ss_pred cCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCE
Q 023565 62 KGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117 (280)
Q Consensus 62 ~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~ 117 (280)
...+.+|..-+|. .+|-.|.+++..|+..|.+.++++. .++.+...++.+|++
T Consensus 160 ~~~~~~g~~VlV~-g~g~vg~~~~~la~~~g~~~v~~~~--~s~~~~~~~~~~g~~ 212 (343)
T cd08235 160 KAGIKPGDTVLVI-GAGPIGLLHAMLAKASGARKVIVSD--LNEFRLEFAKKLGAD 212 (343)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHhCCc
Confidence 3356677775555 5678888888889999888333332 234555555666663
No 439
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=39.60 E-value=2.3e+02 Score=23.74 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=35.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|.-|.++|......|..++++...... ......++..+.++..+.
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 58 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFA 58 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 355888888999999999999999887766533211 122233455566665544
No 440
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=39.57 E-value=1.5e+02 Score=27.00 Aligned_cols=34 Identities=26% Similarity=0.372 Sum_probs=20.0
Q ss_pred CCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCC
Q 023565 174 KVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPS 210 (280)
Q Consensus 174 ~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~ 210 (280)
++| +|+++|||. ..=+++++.... ..++|.|-+.
T Consensus 76 ~~D-~iIavGGGs-~~D~aK~ia~~~-~~p~i~VPTT 109 (347)
T cd08172 76 GAD-VIIGIGGGK-VLDTAKAVADRL-GVPVITVPTL 109 (347)
T ss_pred CCC-EEEEeCCcH-HHHHHHHHHHHh-CCCEEEecCc
Confidence 567 577888765 445555554433 3466666554
No 441
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=39.56 E-value=1.4e+02 Score=28.27 Aligned_cols=117 Identities=22% Similarity=0.294 Sum_probs=65.2
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCC
Q 023565 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTP 142 (280)
Q Consensus 63 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~ 142 (280)
+....|. +++..+-|+-|+.+|..++.+|.+++++-.+ +.+....+..|+++. + .++ ..+..
T Consensus 190 ~~~l~Gk-~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~d---p~r~~~A~~~G~~v~--~----lee-------al~~a- 251 (406)
T TIGR00936 190 NLLIAGK-TVVVAGYGWCGKGIAMRARGMGARVIVTEVD---PIRALEAAMDGFRVM--T----MEE-------AAKIG- 251 (406)
T ss_pred CCCCCcC-EEEEECCCHHHHHHHHHHhhCcCEEEEEeCC---hhhHHHHHhcCCEeC--C----HHH-------HHhcC-
Confidence 3334454 4999999999999999999999986554322 234445556787553 1 222 11222
Q ss_pred CeEEcCCCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchh---HHHHHHHHH---hcCCCcEEEEE
Q 023565 143 DGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGT---VTGAGRFLK---ENNPDIKVYGV 207 (280)
Q Consensus 143 ~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~---~~Gi~~~~k---~~~p~~~vigV 207 (280)
+ +++.--.+ ...+..+.++++ ++..+++-+|.+.. ..++..... ...|.+..+-.
T Consensus 252 D-VVItaTG~-------~~vI~~~~~~~m--K~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 252 D-IFITATGN-------KDVIRGEHFENM--KDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred C-EEEECCCC-------HHHHHHHHHhcC--CCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 3 33321111 223445666666 35678888887764 233333222 24466555543
No 442
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=39.55 E-value=1.5e+02 Score=26.77 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=31.3
Q ss_pred EEEEeCCChHHHHHHHHHHHcC--CcEEEEeCCCCCHHH----HHHHHHCCCEEEEECCC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARG--YNLIIVMPSTCSMER----RIVLRALGAEIILADSA 124 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G--~~~~ivvp~~~~~~~----~~~l~~~Ga~v~~~~~~ 124 (280)
.++..+|+..+..++..+-..+ -.-.|+++....... ....+.+|++++.++.+
T Consensus 63 ~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 122 (373)
T cd06453 63 EIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD 122 (373)
T ss_pred eEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC
Confidence 4777777777766666554332 223455655443332 22335789999888743
No 443
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=39.49 E-value=2.1e+02 Score=28.82 Aligned_cols=54 Identities=24% Similarity=0.254 Sum_probs=37.8
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCc-EEEEeCCC---C--CHHHHHHHHHCCCEEEE
Q 023565 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYN-LIIVMPST---C--SMERRIVLRALGAEIIL 120 (280)
Q Consensus 66 ~~g~~~vv~~SsGN~g~alA~~a~~~G~~-~~ivvp~~---~--~~~~~~~l~~~Ga~v~~ 120 (280)
..|. ++|...+||.|.-+|..+.++|.+ ++++.... . ....+......|.+++.
T Consensus 321 ~~gk-~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~ 380 (652)
T PRK12814 321 HPGK-KVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRE 380 (652)
T ss_pred cCCC-eEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEe
Confidence 3444 489999999999999999999975 77776442 1 23344444567877755
No 444
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=39.49 E-value=1.5e+02 Score=28.07 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=43.1
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC----HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEc
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS----MERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLL 147 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~----~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (280)
.+..+||..+...+..+- +.-.-.|+++...- ..-...++.+|++++.++.. +.++ . .+...++...+|+
T Consensus 82 al~~~sG~~Ai~~al~~l-l~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~-d~e~-l---~~ai~~~tklV~l 155 (431)
T PRK08248 82 ALAVSSGQAAITYSILNI-ASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPS-DPEN-F---EAAITDKTKALFA 155 (431)
T ss_pred EEEECCHHHHHHHHHHHH-hCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCC-CHHH-H---HHhcCCCCeEEEE
Confidence 677888888888777654 22223455555321 12234567899999999853 3322 2 2222333356676
Q ss_pred CCCCCCc
Q 023565 148 RQFENPA 154 (280)
Q Consensus 148 ~~~~~~~ 154 (280)
....||.
T Consensus 156 ~sp~NPt 162 (431)
T PRK08248 156 ETIGNPK 162 (431)
T ss_pred ECCCCCC
Confidence 5445553
No 445
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=39.37 E-value=2.6e+02 Score=26.28 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=23.5
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 023565 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (280)
Q Consensus 67 ~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 101 (280)
||.+ |+..+.|-+|.-.+-.++++|.+++++-.+
T Consensus 79 pgdk-VLv~~nG~FG~R~~~ia~~~g~~v~~~~~~ 112 (383)
T COG0075 79 PGDK-VLVVVNGKFGERFAEIAERYGAEVVVLEVE 112 (383)
T ss_pred CCCe-EEEEeCChHHHHHHHHHHHhCCceEEEeCC
Confidence 3444 777777777777777777777777777654
No 446
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=39.33 E-value=2e+02 Score=24.12 Aligned_cols=113 Identities=12% Similarity=0.196 Sum_probs=60.8
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH---------------HCCCEEEEECCCCCHHHHHHHHH
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLR---------------ALGAEIILADSALRFEEILEKGE 135 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~---------------~~Ga~v~~~~~~~~~~~~~~~a~ 135 (280)
.++..++|..|...+..-...|.+++|+-|+-.+ ....... .-++.+++.-.+ -++.-....
T Consensus 12 ~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~-~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~--d~elN~~i~ 88 (202)
T PRK06718 12 RVVIVGGGKVAGRRAITLLKYGAHIVVISPELTE-NLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATN--DPRVNEQVK 88 (202)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCH-HHHHHHhCCCEEEEecCCChhhcCCceEEEEcCC--CHHHHHHHH
Confidence 4888899999998888888888888887765332 2222221 124444444321 123333334
Q ss_pred HHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhHHHHHHHHHhc
Q 023565 136 EILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKEN 198 (280)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~ 198 (280)
+.+++. . +++-.++|..-. + +.+-+. +-+-+.++++|+|..-.+++.+|+.
T Consensus 89 ~~a~~~-~--lvn~~d~~~~~~--f--~~Pa~~-----~~g~l~iaIsT~G~sP~la~~lr~~ 139 (202)
T PRK06718 89 EDLPEN-A--LFNVITDAESGN--V--VFPSAL-----HRGKLTISVSTDGASPKLAKKIRDE 139 (202)
T ss_pred HHHHhC-C--cEEECCCCccCe--E--EEeeEE-----EcCCeEEEEECCCCChHHHHHHHHH
Confidence 444332 2 233334433210 0 001111 1245788888888888888888753
No 447
>PRK07985 oxidoreductase; Provisional
Probab=39.25 E-value=2.5e+02 Score=24.73 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=35.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC-C--HHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC-S--MERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~-~--~~~~~~l~~~Ga~v~~~~ 122 (280)
.+.+|+..+|.-|.++|......|.+++++-.... . ......++..|.++..+.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLP 106 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEE
Confidence 35588888899999999999999998776532211 1 122233455677665443
No 448
>PRK13984 putative oxidoreductase; Provisional
Probab=39.15 E-value=1.3e+02 Score=29.78 Aligned_cols=51 Identities=25% Similarity=0.377 Sum_probs=38.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--------------C----HHHHHHHHHCCCEEEE
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--------------S----MERRIVLRALGAEIIL 120 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--------------~----~~~~~~l~~~Ga~v~~ 120 (280)
..++..++|-.|.+.|...++.|++++|+-.+.. + ......++.+|.+++.
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~ 352 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL 352 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC
Confidence 3488888999999999999999999998843321 1 2345677889988754
No 449
>PRK06436 glycerate dehydrogenase; Provisional
Probab=39.11 E-value=2.9e+02 Score=24.87 Aligned_cols=101 Identities=21% Similarity=0.167 Sum_probs=61.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ 149 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (280)
+++-..+-|+-|+++|..++.+|++++.+-+...+ .|.... .. +. .++.++. +...++-
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~---------~~~~~~-~~---~l-------~ell~~a-Div~~~l 181 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN---------DGISSI-YM---EP-------EDIMKKS-DFVLISL 181 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc---------cCcccc-cC---CH-------HHHHhhC-CEEEECC
Confidence 45777888999999999999999998877654211 122211 11 12 2334443 4444433
Q ss_pred CCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhHHH--HHHHHHh
Q 023565 150 FENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTG--AGRFLKE 197 (280)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G--i~~~~k~ 197 (280)
-.++. -+..+..+.++++ ++..+++-+|.|+..-- +..++++
T Consensus 182 p~t~~----T~~li~~~~l~~m--k~ga~lIN~sRG~~vd~~aL~~aL~~ 225 (303)
T PRK06436 182 PLTDE----TRGMINSKMLSLF--RKGLAIINVARADVVDKNDMLNFLRN 225 (303)
T ss_pred CCCch----hhcCcCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 23332 2345567888888 46899999999987643 3344443
No 450
>PLN02928 oxidoreductase family protein
Probab=39.10 E-value=1.7e+02 Score=26.91 Aligned_cols=115 Identities=19% Similarity=0.095 Sum_probs=63.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH--HHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEc
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL--RALGAEIILADSALRFEEILEKGEEILKKTPDGYLL 147 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l--~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (280)
+++...+-|+-|+.+|..++.+|++++++=+...+... ..+ ..-..+.. ++.... .....++.++. +...+
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~-~~~~~~~~~~~~~-~~~~~~----~~~L~ell~~a-DiVvl 232 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPE-DGLLIPNGDVDDL-VDEKGG----HEDIYEFAGEA-DIVVL 232 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhh-hhhcccccccccc-ccccCc----ccCHHHHHhhC-CEEEE
Confidence 45888888999999999999999988877543211111 100 00000000 000000 11122344444 44444
Q ss_pred CCCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhH--HHHHHHHHh
Q 023565 148 RQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTV--TGAGRFLKE 197 (280)
Q Consensus 148 ~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~--~Gi~~~~k~ 197 (280)
+- |.+. .-..-+..|.++++ ++..+++-+|-|+.+ ..+..+++.
T Consensus 233 ~l---Plt~-~T~~li~~~~l~~M--k~ga~lINvaRG~lVde~AL~~AL~~ 278 (347)
T PLN02928 233 CC---TLTK-ETAGIVNDEFLSSM--KKGALLVNIARGGLLDYDAVLAALES 278 (347)
T ss_pred CC---CCCh-HhhcccCHHHHhcC--CCCeEEEECCCccccCHHHHHHHHHc
Confidence 32 2222 22345667888888 468999999999887 344455543
No 451
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=39.09 E-value=1.7e+02 Score=22.02 Aligned_cols=64 Identities=20% Similarity=0.155 Sum_probs=31.5
Q ss_pred EEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HHCCCEEEEECCCC-CHHHHHHHHHHHHHhC
Q 023565 73 IEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL-RALGAEIILADSAL-RFEEILEKGEEILKKT 141 (280)
Q Consensus 73 v~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l-~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~ 141 (280)
+-..||++++.+|.+ +-..|.+++.|.. .-.+++ -.+|..-+..+... +.++..+.+.+.+.+.
T Consensus 22 v~T~sG~ta~~isk~--RP~~pIiavt~~~---~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~~~~~ 87 (117)
T PF02887_consen 22 VFTESGRTARLISKY--RPKVPIIAVTPNE---SVARQLSLYWGVYPVLIEEFDKDTEELIAEALEYAKER 87 (117)
T ss_dssp EE-SSSHHHHHHHHT---TSSEEEEEESSH---HHHHHGGGSTTEEEEECSSHSHSHHHHHHHHHHHHHHT
T ss_pred EECCCchHHHHHHhh--CCCCeEEEEcCcH---HHHhhhhcccceEEEEeccccccHHHHHHHHHHHHHHc
Confidence 334447776666554 2335555555542 222223 23566665555433 4555555565555554
No 452
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=38.99 E-value=1.9e+02 Score=26.88 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=33.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
.|+..+++..+..++..+-. +-.-.|+++..+-..-...++.+|++++.++.
T Consensus 106 ~i~it~G~~~al~~~~~~~~-~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~ 157 (412)
T PTZ00433 106 NVVLCSGVSHAILMALTALC-DEGDNILVPAPGFPHYETVCKAYGIEMRFYNC 157 (412)
T ss_pred hEEEeCChHHHHHHHHHHhc-CCCCEEEEccCCcccHHHHHHHcCCEEEEEec
Confidence 37777777777776665432 22234555554444456668889999988864
No 453
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.95 E-value=2.3e+02 Score=24.11 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=23.5
Q ss_pred eEEEEeCC--ChHHHHHHHHHHHcCCcEEEEe
Q 023565 70 TTLIEVTS--GNTGVGLAFIAAARGYNLIIVM 99 (280)
Q Consensus 70 ~~vv~~Ss--GN~g~alA~~a~~~G~~~~ivv 99 (280)
.-+|+..+ +.-|+++|......|.+++++-
T Consensus 9 ~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 9 KIVVMGVANKRSIAWGCAQAIKDQGATVIYTY 40 (252)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHCCCEEEEec
Confidence 44666666 5799999999999999877654
No 454
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=38.84 E-value=67 Score=29.50 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHcCCcEEEEeC-CCC--CHHHHH----HHHHCCCEEEEEC
Q 023565 78 GNTGVGLAFIAAARGYNLIIVMP-STC--SMERRI----VLRALGAEIILAD 122 (280)
Q Consensus 78 GN~g~alA~~a~~~G~~~~ivvp-~~~--~~~~~~----~l~~~Ga~v~~~~ 122 (280)
+|.+++++.++.++|+.++++.| +.. ++..+. .++..|.++...+
T Consensus 185 ~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 236 (335)
T PRK04523 185 TAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSH 236 (335)
T ss_pred cHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 48899999999999999999998 653 222232 2355788887665
No 455
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=38.70 E-value=2.4e+02 Score=23.85 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=34.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|--|.++|......|.+++++...... +.....++..+.++..+.
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~ 67 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIA 67 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 355788888999999999888899987655432111 112233455677765554
No 456
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=38.40 E-value=1.9e+02 Score=25.82 Aligned_cols=52 Identities=19% Similarity=0.156 Sum_probs=32.2
Q ss_pred EEEeCCChHHHHHHHHHHHc-------------CCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAAR-------------GYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~-------------G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
++..++|..+..++..+... +-+.+|+++...-......++.+|++++.++.
T Consensus 60 ~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~ 124 (345)
T cd06450 60 GVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPV 124 (345)
T ss_pred EEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeee
Confidence 56667777776666665421 12456777765555555566667888887763
No 457
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=38.39 E-value=48 Score=31.29 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=25.2
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC 103 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~ 103 (280)
||..++|-.|.+.|.+|++.|.++.++-+...
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~ 33 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEKGGF 33 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-SSSS
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEECCcc
Confidence 78899999999999999999999999986653
No 458
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=38.38 E-value=1.6e+02 Score=21.61 Aligned_cols=87 Identities=21% Similarity=0.287 Sum_probs=55.0
Q ss_pred CHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHHhhC-CCCCEEEEec
Q 023565 104 SMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSG-GKVDAFISGI 182 (280)
Q Consensus 104 ~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~-~~~d~vv~~v 182 (280)
...-.+.++..+-+|+.++.+ .+. +.++.+ . +..++ +.++... +.+++.+ .+.+.+++..
T Consensus 10 ~~~i~~~L~~~~~~vvvid~d---~~~---~~~~~~-~-~~~~i--~gd~~~~---------~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 10 GREIAEQLKEGGIDVVVIDRD---PER---VEELRE-E-GVEVI--YGDATDP---------EVLERAGIEKADAVVILT 70 (116)
T ss_dssp HHHHHHHHHHTTSEEEEEESS---HHH---HHHHHH-T-TSEEE--ES-TTSH---------HHHHHTTGGCESEEEEES
T ss_pred HHHHHHHHHhCCCEEEEEECC---cHH---HHHHHh-c-ccccc--cccchhh---------hHHhhcCccccCEEEEcc
Confidence 345667777766699999854 222 333333 3 22222 1233333 4455543 3579999999
Q ss_pred CCchhHHHHHHHHHhcCCCcEEEEEeC
Q 023565 183 GTGGTVTGAGRFLKENNPDIKVYGVEP 209 (280)
Q Consensus 183 G~Gg~~~Gi~~~~k~~~p~~~vigVe~ 209 (280)
+.=..-.-++..+|+++|+.+|++.-.
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 987777788888899999999887654
No 459
>PRK08264 short chain dehydrogenase; Validated
Probab=38.20 E-value=1.7e+02 Score=24.34 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=26.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCC-cEEEEeCC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGY-NLIIVMPS 101 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~-~~~ivvp~ 101 (280)
+-+|+..+|.-|.++|......|. +++++...
T Consensus 8 ~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 8 VVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred EEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 458888889999999999999998 76666543
No 460
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=38.18 E-value=3e+02 Score=25.44 Aligned_cols=79 Identities=22% Similarity=0.185 Sum_probs=44.9
Q ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCC
Q 023565 105 MERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGT 184 (280)
Q Consensus 105 ~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~ 184 (280)
.--++..+++||+|+.++.+ ++..+.++++. ..++++.- ++... +.++..+|.++..++
T Consensus 180 h~avQ~Aka~ga~Via~~~~---~~K~e~a~~lG----Ad~~i~~~-~~~~~------------~~~~~~~d~ii~tv~- 238 (339)
T COG1064 180 HMAVQYAKAMGAEVIAITRS---EEKLELAKKLG----ADHVINSS-DSDAL------------EAVKEIADAIIDTVG- 238 (339)
T ss_pred HHHHHHHHHcCCeEEEEeCC---hHHHHHHHHhC----CcEEEEcC-Cchhh------------HHhHhhCcEEEECCC-
Confidence 34577778899999999865 34444455543 23444332 33222 111112899999998
Q ss_pred chhHHHHHHHHHhcCCCcEEEEE
Q 023565 185 GGTVTGAGRFLKENNPDIKVYGV 207 (280)
Q Consensus 185 Gg~~~Gi~~~~k~~~p~~~vigV 207 (280)
.-++ -.+++.+.+.-+++.|
T Consensus 239 ~~~~---~~~l~~l~~~G~~v~v 258 (339)
T COG1064 239 PATL---EPSLKALRRGGTLVLV 258 (339)
T ss_pred hhhH---HHHHHHHhcCCEEEEE
Confidence 5444 4455555655454444
No 461
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=38.15 E-value=1.7e+02 Score=24.58 Aligned_cols=53 Identities=28% Similarity=0.325 Sum_probs=35.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEEC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~ 122 (280)
+-+|+..+|.-|.++|..-...|.++++....+.. ......++..+.++..+.
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVA 58 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 34788888999999999988899887665433221 123445566777766554
No 462
>PRK09072 short chain dehydrogenase; Provisional
Probab=38.14 E-value=2.4e+02 Score=23.97 Aligned_cols=33 Identities=36% Similarity=0.406 Sum_probs=26.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 101 (280)
.+-+|+.++|-.|.+++......|.+++++...
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 355888888999999999999999987776543
No 463
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=38.10 E-value=2.4e+02 Score=23.61 Aligned_cols=53 Identities=23% Similarity=0.299 Sum_probs=34.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHH-HHHHHHHCCCEEEEEC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSME-RRIVLRALGAEIILAD 122 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~-~~~~l~~~Ga~v~~~~ 122 (280)
+-+|+..+|-.|.+++......|.+++++........ ....++..+.++..+.
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLV 56 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEE
Confidence 4478888899999999998889998777654422111 2223344566665543
No 464
>PRK07677 short chain dehydrogenase; Provisional
Probab=38.08 E-value=2.5e+02 Score=23.74 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=33.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEEC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 122 (280)
+.+|+..+|.-|.++|......|.+++++-..... ......++..+.++..+.
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~ 56 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQ 56 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 45788888999999999999999976555332111 122233444566665443
No 465
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=38.07 E-value=2.3e+02 Score=25.45 Aligned_cols=49 Identities=8% Similarity=-0.200 Sum_probs=33.6
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
|+..+|+..+..++... ++- -.++++.-+-..-....+.+|++++.++-
T Consensus 60 I~it~Gs~~~l~~~~~~--~~~-~~vv~~~P~y~~y~~~~~~~G~~v~~vp~ 108 (332)
T PRK06425 60 VLIGPGLTHFIYRLLSY--INV-GNIIIVEPNFNEYKGYAFTHGIRISALPF 108 (332)
T ss_pred EEECCCHHHHHHHHHHH--hCC-CcEEEeCCChHHHHHHHHHcCCeEEEEeC
Confidence 77777788877776643 332 23555554556677778899999999874
No 466
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=37.92 E-value=2.5e+02 Score=23.82 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=36.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEE
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILA 121 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~ 121 (280)
.+-+|+.++|.-|.++|......|.+++++.....+ ......++..|.++..+
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~ 62 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAV 62 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 355888888999999999999999887776553322 22344555667776544
No 467
>PRK05839 hypothetical protein; Provisional
Probab=37.89 E-value=3.2e+02 Score=24.98 Aligned_cols=78 Identities=13% Similarity=-0.088 Sum_probs=43.7
Q ss_pred CCCchhhHHHHHHHHHHHHcCC-CCCCCeEEEEeCCChHHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 43 PCSSVKDRIAYSMIKDAEDKGL-ITPGKTTLIEVTSGNTGVGLAFIAAAR-GYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 43 ptGS~K~R~a~~~l~~a~~~g~-~~~g~~~vv~~SsGN~g~alA~~a~~~-G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+.|....|-+..-... .+.|. +.+ ..|+..+|+..+..+...+... +-.-.|++|.-.-..-...++.+|++++.
T Consensus 59 ~~G~~~lr~aia~~l~-~~~g~~~~~--~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~ 135 (374)
T PRK05839 59 SAGEESLREAQRGFFK-RRFKIELKE--NELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLL 135 (374)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCCCc--ceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEE
Confidence 4577777765432221 12232 333 2377777777666554443322 22245666655555556667889999999
Q ss_pred ECC
Q 023565 121 ADS 123 (280)
Q Consensus 121 ~~~ 123 (280)
++-
T Consensus 136 v~~ 138 (374)
T PRK05839 136 MPL 138 (374)
T ss_pred eec
Confidence 864
No 468
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=37.88 E-value=2.6e+02 Score=25.27 Aligned_cols=104 Identities=17% Similarity=0.124 Sum_probs=62.2
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ 149 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (280)
.++...+-|+-|+.+|..++.+|++++.+=+..... -+.+. +... ....++.++. +...++-
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~--------~~~~~--~~~~-------~~l~e~l~~a-Dvvv~~l 198 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSW--------PGVQS--FAGR-------EELSAFLSQT-RVLINLL 198 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCC--------CCcee--eccc-------ccHHHHHhcC-CEEEECC
Confidence 458888889999999999999999988875532110 02211 1110 1122333443 4443322
Q ss_pred CCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhHH--HHHHHHHh
Q 023565 150 FENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVT--GAGRFLKE 197 (280)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~--Gi~~~~k~ 197 (280)
|.+. .-...+..+.++++ +++.+++-+|-|+.+- .+..++++
T Consensus 199 ---Plt~-~T~~li~~~~l~~m--k~ga~lIN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 199 ---PNTP-ETVGIINQQLLEQL--PDGAYLLNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred ---CCCH-HHHHHhHHHHHhcC--CCCcEEEECCCccccCHHHHHHHHhc
Confidence 2222 22345567888888 4688999999998863 44445544
No 469
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=37.76 E-value=2.2e+02 Score=25.89 Aligned_cols=55 Identities=29% Similarity=0.263 Sum_probs=36.0
Q ss_pred CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEE
Q 023565 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIIL 120 (280)
Q Consensus 63 g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~ 120 (280)
+...+|.+ ++...+|-.|.+++..|+.+|.+.+++... +..+...++.+|++.+.
T Consensus 176 ~~~~~g~~-vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~--~~~~~~~~~~~Ga~~~i 230 (357)
T PLN02514 176 GLKQSGLR-GGILGLGGVGHMGVKIAKAMGHHVTVISSS--DKKREEALEHLGADDYL 230 (357)
T ss_pred ccCCCCCe-EEEEcccHHHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHhcCCcEEe
Confidence 44456666 444467899999999999999875554432 22333445678986443
No 470
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=37.72 E-value=2.4e+02 Score=23.47 Aligned_cols=51 Identities=24% Similarity=0.229 Sum_probs=35.3
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEEC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~ 122 (280)
+|+..+|.-|.++|......|.+++++.....+ ......++..+.++..+.
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 54 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQ 54 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 678888999999999999999987666543221 223445556677775554
No 471
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=37.67 E-value=2.5e+02 Score=23.69 Aligned_cols=54 Identities=26% Similarity=0.113 Sum_probs=34.7
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 122 (280)
...+|+..+|.-|.++|......|.+++++-..... ......++..+.++..+.
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~ 64 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAP 64 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 355888888999999999999999876665422111 122334455566665543
No 472
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=37.67 E-value=2.6e+02 Score=27.27 Aligned_cols=105 Identities=27% Similarity=0.294 Sum_probs=65.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEEcCC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQ 149 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 149 (280)
+++...+-|+-|+++|..++.+|++++.+=|. .+..+ ...+|.+. ++ +++ ++.++. +...++-
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~-~~~~~---~~~~g~~~--~~---~l~-------ell~~a-DvV~l~l 201 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPY-ISPER---AEQLGVEL--VD---DLD-------ELLARA-DFITVHT 201 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCC-CChhH---HHhcCCEE--cC---CHH-------HHHhhC-CEEEEcc
Confidence 35778888999999999999999998877654 22222 23456432 22 122 333333 4444433
Q ss_pred CCCCccHHHHHHhHHHHHHHhhCCCCCEEEEecCCchhHH--HHHHHHHh
Q 023565 150 FENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVT--GAGRFLKE 197 (280)
Q Consensus 150 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~--Gi~~~~k~ 197 (280)
-.++.+ ...+..+.++++ +++.+++-++.|+.+- .+..+++.
T Consensus 202 Plt~~T----~~li~~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~~ 245 (525)
T TIGR01327 202 PLTPET----RGLIGAEELAKM--KKGVIIVNCARGGIIDEAALYEALEE 245 (525)
T ss_pred CCChhh----ccCcCHHHHhcC--CCCeEEEEcCCCceeCHHHHHHHHHc
Confidence 223322 234556778887 4789999999999864 44445554
No 473
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=37.63 E-value=2.7e+02 Score=24.07 Aligned_cols=57 Identities=30% Similarity=0.418 Sum_probs=39.6
Q ss_pred HcCCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 61 ~~g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
+.+.+.+|...+|...+|..|.+++..++.+|.+++++.+ + .+...++.+|++-++.
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~-~~~~~~~~~g~~~~~~ 194 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATAS---S-EKAAFARSLGADPIIY 194 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEec---h-HHHHHHHHcCCCEEEe
Confidence 4556667777555555789999999999999998666543 2 5566667788754443
No 474
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=37.54 E-value=1.4e+02 Score=26.61 Aligned_cols=48 Identities=27% Similarity=0.209 Sum_probs=32.3
Q ss_pred HHHHHHHhhC-CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCc
Q 023565 163 TGPEIWQDSG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA 213 (280)
Q Consensus 163 ~~~Ei~~q~~-~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~ 213 (280)
...||++.+. ..++.+|+++-|-++++. ..+++.. ++.|+||.|.-.+
T Consensus 55 ~~~~i~~~l~~~~ik~lVIACNTASa~al--~~LR~~~-~iPVvGviPaik~ 103 (269)
T COG0796 55 RTLEIVDFLLERGIKALVIACNTASAVAL--EDLREKF-DIPVVGVIPAIKP 103 (269)
T ss_pred HHHHHHHHHHHcCCCEEEEecchHHHHHH--HHHHHhC-CCCEEEeccchHH
Confidence 3445655542 249999999988766543 4556655 7889999986544
No 475
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=37.53 E-value=73 Score=30.68 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=38.8
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--------------C----HHHHHHHHHCCCEEEE
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--------------S----MERRIVLRALGAEIIL 120 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--------------~----~~~~~~l~~~Ga~v~~ 120 (280)
..++..++|-.|.+.|...+..|.++++|-.... + ....+.++.+|.+++.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 212 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT 212 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC
Confidence 3599999999999999999999999999853221 1 1234567778988764
No 476
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=37.46 E-value=2.6e+02 Score=23.81 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=33.3
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-CCCEEEEE
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIILA 121 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~-~Ga~v~~~ 121 (280)
...+|+..+|.-|.++|......|.+++++- . +..+.+.+.. ++.++..+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~-r--~~~~~~~l~~~~~~~~~~~ 56 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLD-K--SAAGLQELEAAHGDAVVGV 56 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEe-C--CHHHHHHHHhhcCCceEEE
Confidence 3558888889999999999999999877653 2 2233444433 45555444
No 477
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=37.45 E-value=1.6e+02 Score=25.43 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=34.4
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHHC-CCEEE
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC---SMERRIVLRAL-GAEII 119 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~---~~~~~~~l~~~-Ga~v~ 119 (280)
+++..++|+.|.-+|...+..+.+++++.+... .+...+.++.. |.+++
T Consensus 143 ~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~ 195 (300)
T TIGR01292 143 EVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFL 195 (300)
T ss_pred EEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEE
Confidence 488899999999999999989999998886531 23333444443 54443
No 478
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=37.39 E-value=3.5e+02 Score=25.31 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=35.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-CCCEEEEECC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRA-LGAEIILADS 123 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~-~Ga~v~~~~~ 123 (280)
++..+.|+.|+++|..-...|.+++++-. ++.+...++. .|.+++.-+.
T Consensus 3 viIiG~G~ig~~~a~~L~~~g~~v~vid~---~~~~~~~~~~~~~~~~~~gd~ 52 (453)
T PRK09496 3 IIIVGAGQVGYTLAENLSGENNDVTVIDT---DEERLRRLQDRLDVRTVVGNG 52 (453)
T ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEEC---CHHHHHHHHhhcCEEEEEeCC
Confidence 66677899999999999989998876643 3345666654 6777776553
No 479
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=37.29 E-value=1.3e+02 Score=26.17 Aligned_cols=52 Identities=21% Similarity=0.071 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHc-CCCCCCCeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 023565 50 RIAYSMIKDAEDK-GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (280)
Q Consensus 50 R~a~~~l~~a~~~-g~~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 101 (280)
++..+.+..+.+. +.......+++.-+.||-|..+|..-...|.+++.+.+.
T Consensus 12 ~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~ 64 (244)
T PF00208_consen 12 YGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDS 64 (244)
T ss_dssp HHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 4556666665544 332223456888888999999999999999888887654
No 480
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=37.20 E-value=90 Score=22.57 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=29.7
Q ss_pred HHhhCCCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCCcc
Q 023565 168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAV 214 (280)
Q Consensus 168 ~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~~~ 214 (280)
+++.=...|.+|+-...|...--++-.++....++-|+.|+..+.-.
T Consensus 5 ~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~v 51 (84)
T PF11760_consen 5 LRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFV 51 (84)
T ss_dssp HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EE
T ss_pred HHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEE
Confidence 34432467899988888999999999999888899999999998763
No 481
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=37.17 E-value=1.4e+02 Score=31.86 Aligned_cols=51 Identities=14% Similarity=0.238 Sum_probs=38.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC--------------CH----HHHHHHHHCCCEEEE
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC--------------SM----ERRIVLRALGAEIIL 120 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~--------------~~----~~~~~l~~~Ga~v~~ 120 (280)
+.|+.-++|..|.+.|+..++.|++++|+-.... +. ..++.++.+|.+++.
T Consensus 540 KkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~ 608 (1019)
T PRK09853 540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEF 608 (1019)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEe
Confidence 3599999999999999999999999998864321 11 224566778888765
No 482
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=36.93 E-value=97 Score=28.76 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHH----HHHCCCEEEEEC
Q 023565 79 NTGVGLAFIAAARGYNLIIVMPSTC--SMERRIV----LRALGAEIILAD 122 (280)
Q Consensus 79 N~g~alA~~a~~~G~~~~ivvp~~~--~~~~~~~----l~~~Ga~v~~~~ 122 (280)
|.++|+..+++++|+.++++-|+.- ++..+.. ++..|.++..++
T Consensus 188 ~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 237 (357)
T TIGR03316 188 SVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVN 237 (357)
T ss_pred hHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 6678999999999999999999864 4444333 456788887765
No 483
>PRK06138 short chain dehydrogenase; Provisional
Probab=36.93 E-value=2.5e+02 Score=23.48 Aligned_cols=53 Identities=9% Similarity=0.151 Sum_probs=33.5
Q ss_pred CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEEC
Q 023565 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (280)
Q Consensus 69 ~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 122 (280)
.+-+|+..+|--|.++|......|.+++++...... ......++ .+.++..+.
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~ 59 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQ 59 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEE
Confidence 355888888999999999888889876665533211 12222333 466665543
No 484
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=36.78 E-value=89 Score=28.97 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=37.0
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCC------CHH----HHHHHHHCCCEEEE
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTC------SME----RRIVLRALGAEIIL 120 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~------~~~----~~~~l~~~Ga~v~~ 120 (280)
+++...+|..|.-+|...+..|.+++++.+... ++. ..+.++..|.+++.
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~ 205 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILL 205 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 488899999999999999999999999875431 222 23445667776654
No 485
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=36.76 E-value=2.6e+02 Score=23.52 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=35.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHCCCEEEEEC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS-MERRIVLRALGAEIILAD 122 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~-~~~~~~l~~~Ga~v~~~~ 122 (280)
-+|+..+|.-|.++|......|.+++++-..... ....+.++..|.++..+.
T Consensus 3 ~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~ 55 (254)
T TIGR02415 3 ALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYK 55 (254)
T ss_pred EEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 4788888999999999999999887665433211 223445666787765554
No 486
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=36.67 E-value=2.4e+02 Score=25.61 Aligned_cols=106 Identities=14% Similarity=0.132 Sum_probs=46.7
Q ss_pred cEEEEeCCCCCHHHHHHHHH-CC-CEEEEECCCCCHHHHHHHHHHHHHhCCCe-EEcCCCCCCccHHHHHHhHHHHHHHh
Q 023565 94 NLIIVMPSTCSMERRIVLRA-LG-AEIILADSALRFEEILEKGEEILKKTPDG-YLLRQFENPANPKIHYETTGPEIWQD 170 (280)
Q Consensus 94 ~~~ivvp~~~~~~~~~~l~~-~G-a~v~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~g~~t~~~Ei~~q 170 (280)
|..++.-++.-...-+.++. .+ -++.++.+...++...+...+..++.+.. .|+.+ +|. . ....++.++
T Consensus 2 p~~i~~g~g~l~~l~~~l~~~~~~~~~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~--~~~-~-----~~v~~~~~~ 73 (339)
T cd08173 2 PRDVVVGHGVLEKIPNVLRDLLLGGRVLVVTGPTTKSIAGKKVEALLEDEGEVDVVIVE--DAT-Y-----EEVEKVESS 73 (339)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCCeEEEEECCchHHHHHHHHHHHHHhcCCeEEEEeC--CCC-H-----HHHHHHHHH
Confidence 44555555554444444552 34 34544433223333444455544443211 12222 331 1 233344444
Q ss_pred hC-CCCCEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCC
Q 023565 171 SG-GKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPS 210 (280)
Q Consensus 171 ~~-~~~d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~ 210 (280)
+. .++| +|+++|||.. .=++++... ...+++|.|-+.
T Consensus 74 ~~~~~~d-~iIaiGGGs~-~D~aK~~a~-~~~~p~i~iPTT 111 (339)
T cd08173 74 ARDIGAD-FVIGVGGGRV-IDVAKVAAY-KLGIPFISVPTA 111 (339)
T ss_pred hhhcCCC-EEEEeCCchH-HHHHHHHHH-hcCCCEEEecCc
Confidence 42 2466 5677886654 333443332 234566666554
No 487
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=36.66 E-value=1.5e+02 Score=25.30 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=39.6
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEE 136 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~~~~~~~~~~~a~~ 136 (280)
.||.+.+||. +|+..+-.+.|....|.-.. .. ...|+-++.|+-+.+.++++..++
T Consensus 5 ~IIDyg~GNL-~Sv~~Aler~G~~~~vs~d~----~~-----i~~AD~liLPGVGaf~~am~~L~~ 60 (204)
T COG0118 5 AIIDYGSGNL-RSVKKALERLGAEVVVSRDP----EE-----ILKADKLILPGVGAFGAAMANLRE 60 (204)
T ss_pred EEEEcCcchH-HHHHHHHHHcCCeeEEecCH----HH-----HhhCCEEEecCCCCHHHHHHHHHh
Confidence 4889999999 78888889999655553221 21 346778888887778777766544
No 488
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=36.59 E-value=2.5e+02 Score=23.26 Aligned_cols=53 Identities=26% Similarity=0.252 Sum_probs=35.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHCCCEEEEEC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSM-ERRIVLRALGAEIILAD 122 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~-~~~~~l~~~Ga~v~~~~ 122 (280)
+-+|+..+|..|..++......|.+++++....... .....++..|.++..+.
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 60 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLV 60 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEE
Confidence 457888889999999999888899965555432221 22444556777776643
No 489
>CHL00194 ycf39 Ycf39; Provisional
Probab=36.48 E-value=1.3e+02 Score=26.86 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=26.5
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 101 (280)
-+|+..+|.-|..++......|.+++++...
T Consensus 3 IlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 3 LLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 3788888999999999998899998888754
No 490
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=36.41 E-value=52 Score=29.17 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=26.2
Q ss_pred EEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 023565 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (280)
Q Consensus 71 ~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 101 (280)
.|+..++|-.|.++|.+.++.|++++|+=..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 3889999999999999999999999998754
No 491
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=36.40 E-value=1.2e+02 Score=27.06 Aligned_cols=32 Identities=13% Similarity=0.331 Sum_probs=23.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPS 101 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~ 101 (280)
++++..++|..|++++++....|++-+.++..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR 159 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDV 159 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 34788888889999999888888765555544
No 492
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=36.04 E-value=53 Score=30.54 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=25.8
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~ 102 (280)
||...+|..|.+.|..|+..|.+++++-...
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~V~lvek~~ 32 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAKVLLVEKGP 32 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT-EEEEESSS
T ss_pred EEEECCCHHHHHHHHHHhhhcCeEEEEEeec
Confidence 7888999999999999999999988887554
No 493
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=35.92 E-value=1.2e+02 Score=32.88 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCCCC------CeEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCC
Q 023565 54 SMIKDAEDKGLITPG------KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPST 102 (280)
Q Consensus 54 ~~l~~a~~~g~~~~g------~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~ 102 (280)
.++.+|.++|+..|- ..+|....||-.|.|.|-.-.+.|.-++|+-..+
T Consensus 1764 aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1764 AIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred HHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 567888899988662 2358899999999999988899999888887553
No 494
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=35.85 E-value=63 Score=30.95 Aligned_cols=37 Identities=24% Similarity=0.184 Sum_probs=28.8
Q ss_pred CEEEEecCCchhHHHHHHHHHhcCCCcEEEEEeCCCC
Q 023565 176 DAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSES 212 (280)
Q Consensus 176 d~vv~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~~ 212 (280)
-.+++++|+|-+..-.+.+.+..+...+|++||-...
T Consensus 189 vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~ 225 (448)
T PF05185_consen 189 VVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN 225 (448)
T ss_dssp EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH
T ss_pred EEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh
Confidence 3677888888888877787777778899999997653
No 495
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=35.83 E-value=1.3e+02 Score=27.63 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=37.2
Q ss_pred CCCCeEEEEeC-CCh-----HHH--HHHHHHHHcCCcEEEEeCCCCCH--H-H--HHHHHHCCCEEEEECC
Q 023565 66 TPGKTTLIEVT-SGN-----TGV--GLAFIAAARGYNLIIVMPSTCSM--E-R--RIVLRALGAEIILADS 123 (280)
Q Consensus 66 ~~g~~~vv~~S-sGN-----~g~--alA~~a~~~G~~~~ivvp~~~~~--~-~--~~~l~~~Ga~v~~~~~ 123 (280)
.+|.. |.|.+ +|. +|. ++-..|+..|.+..|++.++.|. . + ...|...|-.+..+..
T Consensus 135 ~~g~~-ILThcnsg~la~~~~gTal~~l~~A~~~gk~f~V~v~EsRP~~qG~rlta~eL~~~GI~vtlI~D 204 (329)
T PRK06371 135 KNGAR-ILTHCNAGALAVVDWGTALAPIRIAHRNGKNIFVFVDETRPRLQGARLTAWELAQEGIDHAIIAD 204 (329)
T ss_pred CCCCE-EEEeCCCCcceeccchhHHHHHHHHHHcCCeeEEEECCCCCcchHHHHHHHHHHHCCCCEEEEcc
Confidence 34444 77765 333 233 34455777899999999887763 2 2 4677888999987763
No 496
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=35.83 E-value=1.3e+02 Score=25.62 Aligned_cols=47 Identities=26% Similarity=0.270 Sum_probs=27.6
Q ss_pred HHHHHHHhhCCCCCEEE-EecCCchhHHHHHHHHHhcCCCcEEEEEeCCC
Q 023565 163 TGPEIWQDSGGKVDAFI-SGIGTGGTVTGAGRFLKENNPDIKVYGVEPSE 211 (280)
Q Consensus 163 ~~~Ei~~q~~~~~d~vv-~~vG~Gg~~~Gi~~~~k~~~p~~~vigVe~~~ 211 (280)
...||+-++ +||.|+ +.+-.||.+.=.+.-++..+++.+|+||+..-
T Consensus 23 ~~qeli~~~--kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdi 70 (206)
T PF04989_consen 23 AYQELIWEL--KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDI 70 (206)
T ss_dssp HHHHHHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-G
T ss_pred HHHHHHHHh--CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCc
Confidence 457888888 577665 33445666555555566777899999999953
No 497
>PRK06701 short chain dehydrogenase; Provisional
Probab=35.78 E-value=3e+02 Score=24.09 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=37.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHCCCEEEEEC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCS--MERRIVLRALGAEIILAD 122 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~--~~~~~~l~~~Ga~v~~~~ 122 (280)
+-+|+..+|.-|.++|......|.+++++...... ......++..|.++..+.
T Consensus 48 ~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~ 102 (290)
T PRK06701 48 VALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIP 102 (290)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEE
Confidence 45888888999999999999899988776543222 233445566677765543
No 498
>PRK08363 alanine aminotransferase; Validated
Probab=35.74 E-value=2e+02 Score=26.46 Aligned_cols=49 Identities=12% Similarity=0.022 Sum_probs=31.9
Q ss_pred EEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEE
Q 023565 72 LIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA 121 (280)
Q Consensus 72 vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~ 121 (280)
|+..+++.+|..++..+- ..-.-.|+++...-..-...++.+|++++.+
T Consensus 96 i~it~G~~~al~~~~~~~-~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~ 144 (398)
T PRK08363 96 VRVTAAVTEALQLIFGAL-LDPGDEILIPGPSYPPYTGLVKFYGGVPVEY 144 (398)
T ss_pred EEEeCCHHHHHHHHHHHh-CCCCCEEEEcCCCCcchHHHHHHcCCEEEEe
Confidence 676777777777666544 3333456666544445556778899998877
No 499
>PHA02542 41 41 helicase; Provisional
Probab=35.71 E-value=4.1e+02 Score=25.63 Aligned_cols=147 Identities=16% Similarity=0.117 Sum_probs=65.8
Q ss_pred CCCCCCCeEEEEeCC--ChHHHHH--HHHHHHcCCcEEEEeCCCCCHHHHHHHH--HCCCEEEEECCCCCHHHHHHHHHH
Q 023565 63 GLITPGKTTLIEVTS--GNTGVGL--AFIAAARGYNLIIVMPSTCSMERRIVLR--ALGAEIILADSALRFEEILEKGEE 136 (280)
Q Consensus 63 g~~~~g~~~vv~~Ss--GN~g~al--A~~a~~~G~~~~ivvp~~~~~~~~~~l~--~~Ga~v~~~~~~~~~~~~~~~a~~ 136 (280)
|-+.+|.-.++.+.. |=+..++ |..+...|.++.+|.-+-.......++- ..+........ .+..+..+....
T Consensus 185 gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl~a~~~~i~~~~l~~-l~~~~~~~~~~~ 263 (473)
T PHA02542 185 GGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRIDANLLDVSLDDIDD-LSKAEYKAKMEK 263 (473)
T ss_pred CCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCCHHHHhh-cCHHHHHHHHHH
Confidence 445777665555554 5454444 4444567888877755544444444332 22222211110 111111111222
Q ss_pred HHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHHhhCCCCCEEEEe----cCCc------h----hHHHHHHHHHhcC--C
Q 023565 137 ILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISG----IGTG------G----TVTGAGRFLKENN--P 200 (280)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~----vG~G------g----~~~Gi~~~~k~~~--p 200 (280)
+.....+..++..++.+..-.........++..+-+..+|.||+= +.++ . -++-|++.+|.+. -
T Consensus 264 ~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAkel 343 (473)
T PHA02542 264 LRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGLAVEH 343 (473)
T ss_pred HHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHHHHHh
Confidence 211122445554443333322344555555554422236666552 1111 1 1456778887654 3
Q ss_pred CcEEEEEeCC
Q 023565 201 DIKVYGVEPS 210 (280)
Q Consensus 201 ~~~vigVe~~ 210 (280)
++.||++.-.
T Consensus 344 ~vpVi~lsQL 353 (473)
T PHA02542 344 DVVVWTAAQT 353 (473)
T ss_pred CCeEEEEEee
Confidence 5677666543
No 500
>PRK08017 oxidoreductase; Provisional
Probab=35.62 E-value=2.7e+02 Score=23.42 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=37.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHCCCEEEEECC
Q 023565 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADS 123 (280)
Q Consensus 70 ~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~Ga~v~~~~~ 123 (280)
+-+|+..+|.-|.++|......|.+++++... ..+.+.++..|++.+.++-
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~ 54 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDL 54 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeec
Confidence 34778888999999999998889887665432 3555666667888777764
Done!