RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023565
(280 letters)
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 448 bits (1155), Expect = e-160
Identities = 169/243 (69%), Positives = 205/243 (84%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I +DVTELIGNTP+VYLNNV +GCV R+AAKLE MEPCSSVKDRI +SMI DAE KGLI
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PG++ LIE TSGNTGVGLAF AAA+GY LII MP++ S ERRI+L A G E++L D A
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186
+ + K EEIL KTP+GY+L+QFENPANPKIHYETTGPEIW+ +GGK+D F+SGIGTGG
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 187 TVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVI 246
T+TGAG++LKE N ++K+YGVEP ESA+L+GG+ G H IQGIGAG IPSVL++D++DEV+
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 244
Query: 247 TVS 249
VS
Sbjct: 245 QVS 247
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 451 bits (1161), Expect = e-160
Identities = 160/243 (65%), Positives = 196/243 (80%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
I +V++LIG TPMVYLN++ GCVA IAAKLE MEPC SVKDRI YSM+ DAE KG I+
Sbjct: 113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFIS 172
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PGK+ L+E TSGNTG+GLAFIAA+RGY LI+ MP++ SMERR++L+A GAE++L D A
Sbjct: 173 PGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKG 232
Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186
++K EEILK TPD Y+L+QF+NPANPKIHYETTGPEIW D+ GKVD F++GIGTGG
Sbjct: 233 MTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGG 292
Query: 187 TVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVI 246
T+TG GRF+KE NP +V GVEP+ES +L+GG+ G H IQGIGAG IP LD I+DEVI
Sbjct: 293 TITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVI 352
Query: 247 TVS 249
+S
Sbjct: 353 AIS 355
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 443 bits (1141), Expect = e-158
Identities = 109/243 (44%), Positives = 159/243 (65%), Gaps = 1/243 (0%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
+ + + +LIG TP +YLN + + A++ K+E P +SVKDR+ +++ AE +G +
Sbjct: 11 VAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLI 69
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PGK+ ++E +SGNTGV LA + A RGY +II MP + S+ERR +LR GAE+IL +AL
Sbjct: 70 PGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALG 129
Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186
+ + ++I+ P+ L QF N IH ETTGPEIW+ + VD FI+G+GTGG
Sbjct: 130 MKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTGG 189
Query: 187 TVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVI 246
T+TG R LK+ ++ VEP+ES VL+GG+ G H IQGIG G +P VLD ++DEV+
Sbjct: 190 TLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLIDEVL 249
Query: 247 TVS 249
V+
Sbjct: 250 CVA 252
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 440 bits (1134), Expect = e-157
Identities = 127/244 (52%), Positives = 167/244 (68%), Gaps = 1/244 (0%)
Query: 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
+I D+T+LIG TP+V L V DG VA I AKLE P +SVKDRI +M++ AE GLI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLI 64
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
P T ++E TSGNTG+ LA + AARGY ++ MP T S+ERR++LRA GAE+IL A
Sbjct: 65 KPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 126 RFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTG 185
+ K EE+ K ++ +QFENPANP IH TT E+W+D+ GKVD ++G+GTG
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183
Query: 186 GTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEV 245
GT+TG + +KE P + VEP+ S VL+GGQ+G H IQGIGAG +P VLD D++DE+
Sbjct: 184 GTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEI 243
Query: 246 ITVS 249
ITV
Sbjct: 244 ITVG 247
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 428 bits (1104), Expect = e-153
Identities = 120/240 (50%), Positives = 163/240 (67%), Gaps = 2/240 (0%)
Query: 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGK- 69
V IG TP+V L VV+ +A + KLE + P S+KDR A+ MIKDAE++G++ PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEE 129
++E TSGNTG+GLA IAA+RGY LI+ MP+ S ER+ VL+A GAE++L D R
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 130 ILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVT 189
E+ LK+ ++ QF+NPAN + HYETTGPE+++ G++DAF+ G GTGGT+T
Sbjct: 123 AREEALR-LKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 190 GAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVITVS 249
G GR+LKE P +KV VEP+ S VL+GG+ G+H QG+G G IP LD+ +LD VI V
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVW 241
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 418 bits (1076), Expect = e-149
Identities = 127/243 (52%), Positives = 172/243 (70%), Gaps = 2/243 (0%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
+TELIG+TP V LN +VD A + KLE M P SSVKDRIA +MI+ AE G +
Sbjct: 4 TVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLK 63
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
PG T++E TSGNTG+GLA +AAA+GY ++VMP T S+ERR +LRA GAE++L A
Sbjct: 64 PG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQG 122
Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186
+ K EE+++ ++ +QF+N ANP+IH TTG EI + G ++DAF++G+GTGG
Sbjct: 123 MRGAIAKAEELVR-EHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTGG 181
Query: 187 TVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVI 246
T+TGAG+ L+E P+IK+Y VEP++S VL+GG+ G H IQGIGAG +P +LD I D VI
Sbjct: 182 TITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVI 241
Query: 247 TVS 249
TV+
Sbjct: 242 TVT 244
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 417 bits (1074), Expect = e-148
Identities = 115/252 (45%), Positives = 156/252 (61%), Gaps = 11/252 (4%)
Query: 6 AIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLI 65
AI D + IGNTP+V L + G + K+E P SVK RI +M+ AE G +
Sbjct: 2 AIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTL 59
Query: 66 TPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSAL 125
T GK +++ TSGNTG+ LA++AAARGY + + MP T S+ER+ +L LG ++L + A
Sbjct: 60 TKGKE-IVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 118
Query: 126 RFEEILEKGEEILKKTPDGY-LLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGT 184
+ + K EEI+ P Y +L+QFENPANP+IH ETTGPEIW+D+ GKVD ++G+GT
Sbjct: 119 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 178
Query: 185 GGTVTGAGRFLK-ENNPDIKVYGVEPSESAVLNGGQR------GKHLIQGIGAGIIPSVL 237
GG++TG R +K + I VEP ES V++ G H IQGIGAG IP L
Sbjct: 179 GGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNL 238
Query: 238 DIDILDEVITVS 249
D+ I+D V TV
Sbjct: 239 DLSIIDRVETVD 250
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 413 bits (1065), Expect = e-146
Identities = 104/248 (41%), Positives = 146/248 (58%), Gaps = 7/248 (2%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCV----ARIAAKLETMEPCSSVKDRIAYSMIKDAEDK 62
I ++ E IG TP+V L+ V + RI KLE P SSVKDR+ ++++ A
Sbjct: 13 IYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKD 72
Query: 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILAD 122
G + PG +IE TSGNTG+ L A GY + I MPST S+ER+++++A GAE+IL +
Sbjct: 73 GRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTE 131
Query: 123 SALRFEEILEKGEEILKKTPDGY-LLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISG 181
+E+ +++K+ P Y + QF NP N H+ T EIW+D+ G+VD +S
Sbjct: 132 GKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGEVDIVVSA 190
Query: 182 IGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDI 241
+GT GTV G LKE IK+ VEP ESAVL G +G H IQGIGAG IP + +
Sbjct: 191 VGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKKEF 250
Query: 242 LDEVITVS 249
+DE+I +
Sbjct: 251 VDEIIPIK 258
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 397 bits (1022), Expect = e-141
Identities = 115/244 (47%), Positives = 157/244 (64%), Gaps = 9/244 (3%)
Query: 7 IKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLIT 66
+ LIG+TP+V L+++ +RI KLE P SVKDR A MI DAE +GL+
Sbjct: 10 HHHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLK 65
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
G ++E TSGN G+ +A I A RG+ +I+ MP T S+ERR VL+ LGAE++L L
Sbjct: 66 NG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELG 122
Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGG 186
+ +EK EI + ++L QFENP N H TTGPEI + ++DAF++G+GTGG
Sbjct: 123 MKGAVEKALEISR-ETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGG 181
Query: 187 TVTGAGRFLKE-NNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEV 245
T++G GR LK +K+ VEP++S VL+GGQ GKH IQGIGAG +P +LD ++DEV
Sbjct: 182 TISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEV 241
Query: 246 ITVS 249
ITV
Sbjct: 242 ITVE 245
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 384 bits (988), Expect = e-135
Identities = 98/240 (40%), Positives = 139/240 (57%), Gaps = 9/240 (3%)
Query: 10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGK 69
+ + IGNTP+V L + + + KLE P SVKDR A SMI +AE +G I PG
Sbjct: 3 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG- 61
Query: 70 TTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEE 129
LIE TSGNTG+ LA IAA +GY + ++MP S ERR +RA GAE+IL E
Sbjct: 62 DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG 121
Query: 130 ILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVT 189
+ E+ + G LL QF NP NP HY TTGPEIWQ +GG++ F+S +GT GT+T
Sbjct: 122 ARDLALEMANRGE-GKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTIT 180
Query: 190 GAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEVITVS 249
G RF++E + + + G++P E + + G I+ +P + + ++DEV+ +
Sbjct: 181 GVSRFMREQSKPVTIVGLQPEEGSSIPG-------IRRWPTEYLPGIFNASLVDEVLDIH 233
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 370 bits (952), Expect = e-130
Identities = 91/251 (36%), Positives = 134/251 (53%), Gaps = 16/251 (6%)
Query: 6 AIKRDVTELIGNTPMVYLNNVV-------DGCVARIAAKLETMEPCSSVKDRIAYSMIKD 58
+ + +GNTP+V L + DG R+ AKLE P S+KDR A MI+
Sbjct: 4 TRYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQ 63
Query: 59 AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118
AE GL+ PG T++E TSGNTG+ LA A +GY LI VMP S+ERR +L GA+I
Sbjct: 64 AEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQI 122
Query: 119 ILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAF 178
I + + + +E+ P +L Q+ NPAN HY TGPE+ D ++ F
Sbjct: 123 IFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHF 181
Query: 179 ISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLD 238
++G+GT GT+ G GRFL+E+ ++K+ EP G + ++ + G +P + D
Sbjct: 182 VAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGE-------GVYALRNMDEGFVPELYD 234
Query: 239 IDILDEVITVS 249
+IL +V
Sbjct: 235 PEILTARYSVG 245
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 360 bits (927), Expect = e-124
Identities = 105/253 (41%), Positives = 148/253 (58%), Gaps = 11/253 (4%)
Query: 7 IKRDVTELIGNTPMVYLNNVV--DGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGL 64
I D+ + IG+TPMV +N + G + AK E SVKDRI+ MI+DAE G
Sbjct: 98 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 157
Query: 65 ITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSA 124
+ PG T+IE TSGNTG+GLA AA RGY IIVMP S E+ VLRALGAEI+ +
Sbjct: 158 LKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTN 216
Query: 125 LRFEE---ILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKVDAFISG 181
RF+ + + + P+ ++L Q+ N +NP HY+TT EI Q GK+D ++
Sbjct: 217 ARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVAS 276
Query: 182 IGTGGTVTGAGRFLKENNPDIKVYGVEPSESAV-----LNGGQRGKHLIQGIGAGIIPSV 236
+GTGGT+TG R LKE P ++ GV+P S + LN ++ + ++GIG IP+V
Sbjct: 277 VGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTV 336
Query: 237 LDIDILDEVITVS 249
LD ++D+ +
Sbjct: 337 LDRTVVDKWFKSN 349
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 363 bits (934), Expect = e-124
Identities = 98/259 (37%), Positives = 145/259 (55%), Gaps = 11/259 (4%)
Query: 1 MEDNNAIKRDVTELIGNTPMVYLNNVV--DGCVARIAAKLETMEPCSSVKDRIAYSMIKD 58
+ I ++ E+IG TP+V LNN+ DG + AK E + P SVKDRI Y M++D
Sbjct: 44 IAHRQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQD 103
Query: 59 AEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118
AE++GL+ PG T+IE TSGNTG+GLA A +GY IIVMP S E+ LR LGA+I
Sbjct: 104 AEEQGLLKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKI 162
Query: 119 ILADSALRFEE---ILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQDSGGKV 175
I + ++ ++ +++ ++TP+ +L Q+ N NP HY+ T EI KV
Sbjct: 163 IRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKV 222
Query: 176 DAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAV-----LNGGQRGKHLIQGIGA 230
D + GT GT++G GR +KE P ++ GV+P S + LN + ++GIG
Sbjct: 223 DMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGY 282
Query: 231 GIIPSVLDIDILDEVITVS 249
P+V D ++D +
Sbjct: 283 DFPPTVFDDTVVDVWTKIG 301
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 345 bits (887), Expect = e-119
Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 17/244 (6%)
Query: 10 DVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCS-SVKDRIAYSMIKDAEDKGLITPG 68
D E TP+V + R+ KLE P S SVKDR A +I + + G
Sbjct: 89 DFFERGKPTPLVRSRLQLPNG-VRVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG 145
Query: 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFE 128
+ + + TS N GV L+ +A GY + +P +++ R LGA++I+ A
Sbjct: 146 -SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTV 204
Query: 129 EILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIWQD---SGGKVDAFISGIGTG 185
+L + + K + QF N AN + H T EI+ G + +GT
Sbjct: 205 HLLPRVMK-DSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTS 263
Query: 186 GTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDEV 245
G ++ A +L+ +P I+ V+P++ + G I+ + G++ + +DI +
Sbjct: 264 GHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPG-------IRRVETGMLW-INMLDISYTL 315
Query: 246 ITVS 249
V+
Sbjct: 316 AEVT 319
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 82.7 bits (205), Expect = 3e-18
Identities = 46/271 (16%), Positives = 85/271 (31%), Gaps = 39/271 (14%)
Query: 1 MEDNNAIKRDVTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIK--- 57
M + L TP+ + + K+++ +P S K R K
Sbjct: 30 MGRGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWA 89
Query: 58 DAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAE 117
+ ++GN G+ A+ A G IV+P T L+ GA
Sbjct: 90 KQGCAHFVCS--------SAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGAT 141
Query: 118 IILADSALRFEEILEKGEEILKKTPDGYLLRQFENP------ANPKIHYETTGPEIWQDS 171
+ +E E + + K P + F++P A + E+ +
Sbjct: 142 CKVVGEL--LDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHA-------SIVKELKETL 192
Query: 172 GGKVDAFISGIGTGGTVTGAGRFLKENN-PDIKVYGVEPSESAVLNGGQRGKHLIQ---- 226
K A +G GG + G + L+E D+ V +E + + L+
Sbjct: 193 WEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKI 252
Query: 227 -----GIGAGII-PSVLDI--DILDEVITVS 249
+G + L + + +S
Sbjct: 253 TSVAKALGVKTVGSQALKLFQEHPIFSEVIS 283
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 80.7 bits (200), Expect = 9e-18
Identities = 40/262 (15%), Positives = 81/262 (30%), Gaps = 48/262 (18%)
Query: 14 LIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIK---DAEDKGLITPGKT 70
TP++ + + K E ++P S K R + + L+
Sbjct: 4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGCRHLVCS--- 60
Query: 71 TLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEI 130
+ GN G+ A+ A G IV+P + S++ L+ GAE+ L ++E
Sbjct: 61 -----SGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKV--WDEA 113
Query: 131 LEKGEEILKKTPDGYLLRQFENPANPKIH-YE---------TTGPEIWQDSGGKVDA-FI 179
+ +E+ K+ G+ + ++ + E+ A +
Sbjct: 114 NLRAQELAKRD--GWEN----------VPPFDHPLIWKGHASLVQELKAVLRTPPGALVL 161
Query: 180 SGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQ---------GIGA 230
+ G G L+ + + +E + N L+ +GA
Sbjct: 162 AVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGA 221
Query: 231 GII-PSVLDI--DILDEVITVS 249
+ L+ V
Sbjct: 222 KTVAARALECMQVCKIHSEVVE 243
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 79.1 bits (196), Expect = 3e-17
Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 42/213 (19%)
Query: 18 TPMVY---LNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAED-KGLITPGKTTLI 73
TP++ L+ ++ R+ K E ++ S K R A S E+ KGL+
Sbjct: 21 TPLLTSRLLDGLLG---KRLLLKAEHLQKTGSFKARGALSKALALENPKGLLA------- 70
Query: 74 EVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEK 133
V+SGN G+A+ A G ++VMP S ++ RA GAE++ + E
Sbjct: 71 -VSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVT--AKNREEV 127
Query: 134 GEEILKKTPDGYLLRQFENPANPKIH-YE---------TTGPEIWQ---DSGGKVDAFIS 180
+ ++T GY L IH ++ T G E+ G A ++
Sbjct: 128 ARALQEET--GYAL----------IHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLA 175
Query: 181 GIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA 213
+G GG + G +K +P V GVEP +
Sbjct: 176 PVGGGGLLAGLATAVKALSPTTLVLGVEPEAAD 208
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 79.5 bits (197), Expect = 3e-17
Identities = 57/264 (21%), Positives = 101/264 (38%), Gaps = 58/264 (21%)
Query: 18 TPMVY---LNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMI-----KDAEDK--GLITP 67
TP++ LN + + K E + S K R A + + E K ++T
Sbjct: 26 TPVLTSSILNQLTG---RNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVT- 81
Query: 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF 127
+SGN G L + A G IV+P T +++ ++A GA I+ + +
Sbjct: 82 -------HSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS--D 132
Query: 128 EEILEKGEEILKKTPDGYLLRQFENPANPKIH-YE---------TTGPEIWQDSGGKVDA 177
E + + ++T ++ +H + T E+ VDA
Sbjct: 133 ESRENVAKRVTEET--EGIM----------VHPNQEPAVIAGQGTIALEVLNQVPL-VDA 179
Query: 178 FISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAV----LNGGQRGKHLIQG--IGAG 231
+ +G GG + G +K P +KVY EPS + G+ +L I G
Sbjct: 180 LVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADG 239
Query: 232 IIPSVLDI------DILDEVITVS 249
+ S+ D++D++ TV+
Sbjct: 240 VKSSIGLNTWPIIRDLVDDIFTVT 263
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 78.3 bits (194), Expect = 6e-17
Identities = 44/216 (20%), Positives = 82/216 (37%), Gaps = 43/216 (19%)
Query: 15 IGNTPMVY---LNNVVDGCVARIAAKLETMEPCSSVKDRIAY----SMIKDAEDKGLITP 67
TP++ +N A + K E + + K R A + + G++T
Sbjct: 24 ANKTPVLTSSTVNKEFV---AEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLT- 79
Query: 68 GKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRF 127
+SGN +A A G I+MP + + G ++I+ D
Sbjct: 80 -------FSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--K 130
Query: 128 EEILEKGEEILKKTPDGYLLRQFENPANPKIH-YE---------TTGPEIWQDSGGKVDA 177
++ + +EI ++ G + I Y+ T E++++ G +DA
Sbjct: 131 DDREKMAKEISERE--GLTI----------IPPYDHPHVLAGQGTAAKELFEEVGP-LDA 177
Query: 178 FISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA 213
+G GG ++G+ + P+ +VYGVEP
Sbjct: 178 LFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGN 213
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 78.4 bits (194), Expect = 7e-17
Identities = 61/265 (23%), Positives = 98/265 (36%), Gaps = 49/265 (18%)
Query: 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMI----KDAEDKGLIT 66
+ I T M N + C I K E M+ S K R A++ + + + KG++
Sbjct: 34 LAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEKRKGVVA 93
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
++GN G++ A G + +VMP + AE++L
Sbjct: 94 --------CSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDN-- 143
Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIH-YE---------TTGPEIWQDSGGKVD 176
F + + K EI++ G + I Y+ T G EI +D VD
Sbjct: 144 FNDTIAKVSEIVETE--GRIF----------IPPYDDPKVIAGQGTIGLEIMEDLY-DVD 190
Query: 177 AFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGII--- 233
I IG GG + G +K NP IKV GV+ + + G +
Sbjct: 191 NVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVHGMAASYYTGEITTHRTTGTLADG 250
Query: 234 -----PSVLDIDI----LDEVITVS 249
P L +I +D+++ VS
Sbjct: 251 CDVSRPGNLTYEIVRELVDDIVLVS 275
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 78.3 bits (193), Expect = 1e-16
Identities = 46/205 (22%), Positives = 80/205 (39%), Gaps = 27/205 (13%)
Query: 69 KTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFE 128
K T T GN G G+A+ A G N +I MP + ER + LGAE I+ D ++
Sbjct: 112 KMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMN--YD 169
Query: 129 EILEKGEEILKKTPDGYLLRQFENPANPKIH------YETTGPEIWQ---DSGGKVDAFI 179
+ + + ++ +++ KI Y T E + + G +
Sbjct: 170 DTVRLTMQHAQQH-GWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVL 228
Query: 180 SGIGTGGTVTGAGRFLKE--NNPDIKVYGVEPSESA-VLNGGQRGK-HLIQG----IGAG 231
G G G +L + + ++ VEP ++ + G +G + G I AG
Sbjct: 229 LQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVNVGGDMATIMAG 288
Query: 232 I---IPSVLDIDIL----DEVITVS 249
+ P+ L +IL + I+
Sbjct: 289 LACGEPNPLGWEILRNCATQFISCQ 313
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 75.0 bits (185), Expect = 1e-15
Identities = 46/185 (24%), Positives = 71/185 (38%), Gaps = 14/185 (7%)
Query: 16 GNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEV 75
G TP++ N+ I K+E + P S KDR + DA G ++
Sbjct: 37 GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ-----RAVLCA 91
Query: 76 TSGNTGVGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILEKG 134
++GNT A AA G +++P +M + GA+II D F++ LE
Sbjct: 92 STGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDG--NFDDCLELA 149
Query: 135 EEILKKTPDGYLLRQFENPANPKIH--YETTGPEIWQDSGGKVDAFISGIGTGGTVTGAG 192
++ P L+ N NP +T EI G D +G G +T
Sbjct: 150 RKMAADFPTISLV----NSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITAYW 205
Query: 193 RFLKE 197
+ E
Sbjct: 206 KGYTE 210
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 74.1 bits (182), Expect = 4e-15
Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 13/184 (7%)
Query: 16 GNTPMVYLNNVVD--GCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLI 73
GN+ + + + + K + S KD ++ + +
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 188
Query: 74 EVTSGNTGVGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILE 132
++G+T L+ A+ G I+ +P+ SM + + A GA ++ D+ F+ ++
Sbjct: 189 CASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT--DFDGCMK 246
Query: 133 KGEEILKKTPDGYLLRQFENPANPKIH--YETTGPEIWQDSGGKV-DAFISGIGTGGTVT 189
EI + P YL N N +T EI Q +V D I G G +
Sbjct: 247 LIREITAELP-IYLA----NSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIY 301
Query: 190 GAGR 193
+
Sbjct: 302 AFYK 305
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 72.1 bits (177), Expect = 1e-14
Identities = 47/246 (19%), Positives = 90/246 (36%), Gaps = 34/246 (13%)
Query: 31 VARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAA 90
V A KL ++ D YS + E K + ++ ++GN G+ + ++A
Sbjct: 126 VLAHAEKLALEAGLLTLDD--DYSKLLSPEFKQFF--SQYSIAVGSTGNLGLSIGIMSAR 181
Query: 91 RGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQF 150
G+ + + M + ++ LR+ G ++ + + +E+G + + P+ + +
Sbjct: 182 IGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQD--YGVAVEEGRKAAQSDPNCFFI-DD 238
Query: 151 ENPANPKIHYETTGPEI---WQDSGGKVDAF-----ISGIGTGGTVTGAGRFLKEN-NPD 201
EN + Y G + + G VDA G GG G LK
Sbjct: 239 ENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDH 298
Query: 202 IKVYGVEPSESAV----LNGGQRGKHLIQGIG-------AGI---IPSVLDIDIL----D 243
+ + EP+ S ++ G + +Q IG G+ S + D
Sbjct: 299 VHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLD 358
Query: 244 EVITVS 249
T+S
Sbjct: 359 GFYTLS 364
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 70.3 bits (173), Expect = 6e-14
Identities = 64/266 (24%), Positives = 105/266 (39%), Gaps = 51/266 (19%)
Query: 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMI----KDAEDKGLIT 66
V E TP+ + + I K E +P S K R AY+M+ ++ + G+IT
Sbjct: 25 VYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVIT 84
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILA-DSAL 125
++GN G+AF +A G +IVMP+ + + +R G E++L +
Sbjct: 85 A--------SAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGAN-- 134
Query: 126 RFEEILEKGEEILKKTPDGYLLRQFENPANPKIH-YE---------TTGPEIWQDSGGKV 175
F+E K E+ ++ G+ + ++ T E+ Q +
Sbjct: 135 -FDEAKAKAIELSQQQ--GFTW----------VPPFDHPMVIAGQGTLALELLQQDA-HL 180
Query: 176 DAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQ--------- 226
D +G GG G +K+ P IKV VE +SA L H +
Sbjct: 181 DRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAE 240
Query: 227 GIG---AGIIPSVLDIDILDEVITVS 249
G+ G L + LD++ITV
Sbjct: 241 GVAVKRIGDETFRLCQEYLDDIITVD 266
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 70.0 bits (172), Expect = 6e-14
Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 15/186 (8%)
Query: 16 GNTPMVYLNNVVD--GCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLI 73
GNTP++ +N+ G +I K E + P S KDR I A + G +I
Sbjct: 29 GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK-----RAVI 83
Query: 74 EVTSGNTGVGLAFIAAARGYNLIIVMPS-TCSMERRIVLRALGAEIILADSALRFEEILE 132
++GNT A AA G +++P ++ + GA+++ F++ L
Sbjct: 84 CASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQG--TFDDALN 141
Query: 133 KGEEILKKTPDGYLLRQFENPANPKIH-YETTGPEIWQDSGGKVDAFISGIGTGGTVTGA 191
+I + + NP +I +T EI G D +G G +T
Sbjct: 142 IVRKIGEN--FPVEIVNSVNPY--RIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITAY 197
Query: 192 GRFLKE 197
+ K
Sbjct: 198 WKGFKI 203
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 69.6 bits (171), Expect = 8e-14
Identities = 54/217 (24%), Positives = 87/217 (40%), Gaps = 37/217 (17%)
Query: 11 VTELIGNTPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMI----KDAEDKGLIT 66
V ++ +P+ + D K E + S K R AY+M+ ++ DKG+IT
Sbjct: 54 VYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVIT 113
Query: 67 PGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALR 126
++GN G+A IVMP+T + +RALG +++L
Sbjct: 114 --------ASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKT-- 163
Query: 127 FEEILEKGEEILKKTPDGYLLRQFENPANPKIH-YE---------TTGPEIWQDSGGKVD 176
F+E E+ +K G I ++ T G EI + +
Sbjct: 164 FDEAQTHALELSEKD--GLKY----------IPPFDDPGVIKGQGTIGTEINRQLK-DIH 210
Query: 177 AFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESA 213
A +G GG + G F K+ P+ K+ GVEP +A
Sbjct: 211 AVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAA 247
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 68.1 bits (167), Expect = 2e-13
Identities = 42/187 (22%), Positives = 73/187 (39%), Gaps = 17/187 (9%)
Query: 16 GNTPMVYLNNVVDGCV--ARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLI 73
G+TP++ L + R+ AK E + P S KDR + A + G +
Sbjct: 27 GSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA-----QAVA 81
Query: 74 EVTSGNTGVGLAFIAAARGYNLIIVMPSTC-SMERRIVLRALGAEIILADSALRFEEILE 132
++GNT A AA G I+V+P+ ++ + GA I+ + F++ L
Sbjct: 82 CASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--NFDDALR 139
Query: 133 KGEEILKKTPDGYLLRQFENPANPKIH--YETTGPEIWQDSGGKVDAFISGIGTGGTVTG 190
+++ + P L+ N NP +T E+ + G +G G +T
Sbjct: 140 LTQKLTEAFP-VALV----NSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITA 194
Query: 191 AGRFLKE 197
K
Sbjct: 195 HWMGYKA 201
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 7e-05
Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 52/184 (28%)
Query: 96 IIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKK------TPD-GYLLR 148
II+ S R+ F +L K EE+++K + +L+
Sbjct: 54 IIMSKDAVSGTLRL-----------------FWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 149 QFEN----PANPKIHYETTGPEIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKV 204
+ P+ Y ++ D F V+ R +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYND----NQVF-----AKYNVS---RLQPYLKLRQAL 144
Query: 205 YGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDIL-DEVITVSHKIDLHLLHFCCCS 263
+ P+++ +++G +G+G + + +D+ + + L+ C+
Sbjct: 145 LELRPAKNVLIDG---------VLGSG--KTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 264 SPTL 267
SP
Sbjct: 194 SPET 197
Score = 34.8 bits (79), Expect = 0.027
Identities = 37/267 (13%), Positives = 72/267 (26%), Gaps = 87/267 (32%)
Query: 30 CVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAA 89
++ L + P +V + + G GKT + +
Sbjct: 136 PYLKLRQALLELRPAKNV---LIDGV------LGS---GKTWVA-------------LDV 170
Query: 90 ARGYNLIIVMP--------STCSMERRIV--LRALGAEI-----ILADSA----LRFEEI 130
Y + M C+ ++ L+ L +I +D + LR I
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 131 LEKGEEIL--KKTPDGYL-LRQFENPANPKIHYETTGPEIWQ--DSGGKV-----DAFIS 180
+ +L K + L L +N + W + K+ ++
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQN------------AKAWNAFNLSCKILLTTRFKQVT 278
Query: 181 GIGTGGTVT------GAGRFLKENNPDI--KVYGVEPSE--SAVLNGGQRGKHLIQGIGA 230
+ T T + + + K P + VL R + I
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR---RLSIIAE 335
Query: 231 GIIPSV--------LDIDILDEVITVS 249
I + ++ D L +I S
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESS 362
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 1e-04
Identities = 47/260 (18%), Positives = 78/260 (30%), Gaps = 86/260 (33%)
Query: 18 TPMVYLNNVVDGCVARIAAKLETMEPCSSVKDRIAYSMIKDAEDKGLITPGKTTLIEVTS 77
+PM+ ++N+ V K + P ++ S++ G L V S
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGK---QVEISLVN----------GAKNL--VVS 380
Query: 78 GNT----GVGLAF--IAAARGYN--LIIVMPSTCSMER--RIVLRAL------------- 114
G G+ L A G + I P + ER + R L
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRI---PFS---ERKLKFSNRFLPVASPFHSHLLVP 434
Query: 115 GAEIILADSALRFEEILEKGEEILK----KTPDGYLLRQFENPANPKIHYE-TTGPEIWQ 169
+++I D L + ++ ++ T DG LR + +I P W+
Sbjct: 435 ASDLINKD--LVKNNVSFNAKD-IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 170 DSGGKVDAFISGI---GTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQ 226
+ + I G GG +G G N
Sbjct: 492 TT---TQFKATHILDFGPGG-ASGLGVLTHRN--------------------------KD 521
Query: 227 GIGAGIIP-SVLDIDILDEV 245
G G +I LDI+ D+
Sbjct: 522 GTGVRVIVAGTLDINPDDDY 541
Score = 35.8 bits (82), Expect = 0.018
Identities = 25/123 (20%), Positives = 36/123 (29%), Gaps = 38/123 (30%)
Query: 63 GLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVLRAL------GA 116
G TPG+ L G TG + A I + V +A+ G
Sbjct: 257 GF-TPGE--LRSYLKGATGHSQGLVTAV-----AIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 117 E-------IILADSALRFEEILEKGEEILKKTP----DGYLLRQFE------N---PANP 156
L S L E+ LE E + +P Q + N PA
Sbjct: 309 RCYEAYPNTSLPPSIL--EDSLENNEGV--PSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 157 KIH 159
++
Sbjct: 365 QVE 367
Score = 34.3 bits (78), Expect = 0.051
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 14/64 (21%)
Query: 191 AGRFLKENNPDIKVYG------VE--PSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDIL 242
A K+ YG V P + GG++GK + + A I +++D +
Sbjct: 1649 ADNHFKDT------YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 243 DEVI 246
E I
Sbjct: 1703 TEKI 1706
Score = 33.5 bits (76), Expect = 0.078
Identities = 30/153 (19%), Positives = 47/153 (30%), Gaps = 62/153 (40%)
Query: 127 FEEILEKGEEILKKTPDGYLLRQFEN--PANPKIHYETTGPEIWQD--SGGKV--DAFIS 180
F+EI E ++ G LL + PA + ++D S G + DA +
Sbjct: 1707 FKEINEHSTSYTFRSEKG-LLSATQFTQPA---LT--LMEKAAFEDLKSKGLIPADATFA 1760
Query: 181 G--IGTGGTVTGAGRFLKENNPDIKVY-------GVEPSESAV--LNGGQRGKHLIQ--- 226
G +G E Y V ES V + RG +Q
Sbjct: 1761 GHSLG-------------E-------YAALASLADVMSIESLVEVVF--YRGM-TMQVAV 1797
Query: 227 ----------GIGA---GIIPSVLDIDILDEVI 246
G+ A G + + + L V+
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Score = 31.9 bits (72), Expect = 0.27
Identities = 35/170 (20%), Positives = 59/170 (34%), Gaps = 47/170 (27%)
Query: 51 IAYSMIKDAEDKGLITPGKTT----LIEVT--SGNTGVGLAF-----IAAARGYNLIIVM 99
+ + +D + KGLI T L E + V ++ + RG + + +
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV-MSIESLVEVVFYRGMTMQVAV 1797
Query: 100 P------STCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYLLRQFENP 153
P S M I + + AL + ++ E + K+T G+L+ E
Sbjct: 1798 PRDELGRSNYGM---IAINPGRVAASFSQEAL--QYVV---ERVGKRT--GWLV---E-I 1843
Query: 154 ANPKIHYETTGPEIWQD-SGGKVDAFISGIGTGGTVTGAGRFLKENNPDI 202
N Y Q + G + A + TVT F+K DI
Sbjct: 1844 VN----YNVEN---QQYVAAGDLRA-LD------TVTNVLNFIKLQKIDI 1879
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 41.0 bits (96), Expect = 3e-04
Identities = 35/153 (22%), Positives = 55/153 (35%), Gaps = 17/153 (11%)
Query: 52 AYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI--AAARGYNLIIVMPSTCSMERRI 109
AY M+ + + G LI SG G+G I G + V S ++
Sbjct: 206 AYRMLVS-DRGAQMKQGDIVLIWGASG--GLGSYAIQFVKNGGGIPVAV---VSSAQKEA 259
Query: 110 VLRALGA-EIILADSALRFEEILEKGEEILKKTPDGYLLRQFENPANPKIHYETTGPEIW 168
+RALG +I ++I + +++ L + P I +E TG +
Sbjct: 260 AVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTF 319
Query: 169 QDS------GGKVDAFISGIGTGGTVTGAGRFL 195
S GG V G +G T R+L
Sbjct: 320 GLSVIVARRGGTV--VTCGSSSGYLHTFDNRYL 350
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 39.4 bits (92), Expect = 9e-04
Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 17/153 (11%)
Query: 52 AYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI--AAARGYNLIIVMPSTCSMERRI 109
AY + G+ G LI SG G+G A A G N I V S ++
Sbjct: 214 AYRQLVSRNGAGM-KQGDNVLIWGASG--GLGSYATQFALAGGANPICV---VSSPQKAE 267
Query: 110 VLRALGAEIILADSALRFEEILEKGEEILKKTPD-GYLLRQFENPANPKIHYETTGPEIW 168
+ RA+GAE I+ +A + ++ + K+ G +R+ + I +E G E +
Sbjct: 268 ICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETF 327
Query: 169 QDS------GGKVDAFISGIGTGGTVTGAGRFL 195
S GG + +G R+L
Sbjct: 328 GASVFVTRKGGTIT--TCASTSGYMHEYDNRYL 358
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 35.3 bits (82), Expect = 0.015
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 52 AYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI--AAARGYNLIIVMPSTCSMERRI 109
A +M D K + +T+G + + I A G+ I+ E+
Sbjct: 153 AIAMF----DIVKQEGEKAFV--MTAGASQLCKLIIGLAKEEGFRPIVT---VRRDEQIA 203
Query: 110 VLRALGAEIILADSALRFEEIL 131
+L+ +GA +L + A FE L
Sbjct: 204 LLKDIGAAHVLNEKAPDFEATL 225
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 33.3 bits (76), Expect = 0.081
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 166 EIWQDSGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLI 225
+ G K D + TG T G + +V GV+ S ++ +
Sbjct: 181 AQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPA-QTREQITRIA 239
Query: 226 QG----IGAGIIPSVLDIDILDE 244
+ +G D+ + +
Sbjct: 240 RQTAEKVGLERDIMRADVVLDER 262
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 32.6 bits (75), Expect = 0.13
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 18/95 (18%)
Query: 52 AYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFI--AAARGYNLIIVMPSTCSMERRI 109
AY M+ + + G + L V S GVG A + + T S +
Sbjct: 130 AYVMLFE---VANLREGMSVL--VHSAGGGVGQAVAQLCSTVPNVTVFG---TASTFKHE 181
Query: 110 VLRALGAEIILADSALRFEEILEKGEEILKKTPDG 144
++ + ++ +E+ + + +G
Sbjct: 182 AIKDSVTHLFDRNADYV--------QEVKRISAEG 208
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 32.0 bits (73), Expect = 0.20
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 52 AYSMIKD-AEDKGLITPGKTTLIEVTSGNTGVG-LAF-IAAARGYNLIIVMPSTCSMERR 108
A+S I GK LI SG GVG A + A ++ + CS +
Sbjct: 167 AWSAINKVGGLNDKNCTGKRVLILGASG--GVGTFAIQVMKAWDAHVT----AVCSQDAS 220
Query: 109 IVLRALGAEIILADSALRFEEILEKGE 135
++R LGA+ ++ + EE L+ +
Sbjct: 221 ELVRKLGADDVIDYKSGSVEEQLKSLK 247
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 31.3 bits (71), Expect = 0.25
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 177 AFISGIGTGGTV----TGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQG 227
+ + G G GRF P GVEPSE +RG +++G
Sbjct: 40 QAVKCLLPEGRGVEIGVGTGRFAV---PLKIKIGVEPSERMAEIARKRGVFVLKG 91
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Length = 321
Score = 31.4 bits (72), Expect = 0.29
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 61 DKGLITPGKTTLIEVTSGNTGVG-LAF-IAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118
++ + G LI +G GVG LA +A +G +I +T S L+ALGAE
Sbjct: 146 NQAEVKQGDVVLIHAGAG--GVGHLAIQLAKQKGTTVI----TTASKRNHAFLKALGAEQ 199
Query: 119 ILADSALRFEEILEKG 134
+ F +
Sbjct: 200 CINYHEEDFLLAISTP 215
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 30.8 bits (69), Expect = 0.33
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 182 IGTGGTVTGAGRFLKE---NNPDIKVYGVEPSESAVLNGGQR 220
+GTG G+ + NP V ++ +S + +
Sbjct: 34 VGTGD-----GKHPYKVARQNPSRLVVALDADKSRMEKISAK 70
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Length = 204
Score = 29.8 bits (68), Expect = 0.72
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 18/60 (30%)
Query: 111 LRALGAEIILADSALRFEEILEKGEEILKK----------TPDGYLLRQ------FENPA 154
R LGA ++ AD + KG + ++ +G + R+ F++
Sbjct: 21 FRELGAYVLDADKLIH--SFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEE 78
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2
function project, S2F, structural genomics, transferase;
HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Length = 206
Score = 29.8 bits (68), Expect = 0.75
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 27/77 (35%)
Query: 111 LRALGAEIILADSALRFEEILEKGEEILKK----------TPDGYL----LRQ--FENPA 154
LG ++ AD R E++ K +L K T G L LR+ F +
Sbjct: 22 FTDLGVPLVDADVVAR--EVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDE 79
Query: 155 ---------NPKIHYET 162
+P I
Sbjct: 80 DKLWLNNLLHPAIRERM 96
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849,
bifunctional coenzyme A synthase (COA synthase), S
genomics; HET: ACO UNL; 1.70A {Mus musculus}
Length = 281
Score = 29.9 bits (68), Expect = 0.84
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 18/75 (24%)
Query: 111 LRALGAEIILADSALRFEEILEKGEEILKK----------TPDGYLLRQ------FENPA 154
L+ LGA II +D G + DG + R+ F N
Sbjct: 95 LKNLGAYIIDSDHLGH--RAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKK 152
Query: 155 NPKIHYETTGPEIWQ 169
KI + P I +
Sbjct: 153 QMKILTDIVWPVIAK 167
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 29.9 bits (67), Expect = 0.85
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 159 HYETTGPEIWQDSGGKVDAFIS--GIGTGGTV----TGAGRFLKE-NNPDIKVYGVEPSE 211
Y T + V+A I+ + G + G G + N + VY VEPS
Sbjct: 11 QYSQTRVPDIR----IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSI 66
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3;
1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A*
1viy_A 1t3h_A 1n3b_A
Length = 218
Score = 29.4 bits (67), Expect = 0.90
Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 27/77 (35%)
Query: 111 LRALGAEIILADSALRFEEILEKGEEILKK----------TPDGYL----LRQ--FENPA 154
LG +I AD R +++E G L DG L LR+ F NP
Sbjct: 24 FADLGINVIDADIIAR--QVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81
Query: 155 ---------NPKIHYET 162
+P I ET
Sbjct: 82 EKNWLNALLHPLIQQET 98
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 29.9 bits (67), Expect = 1.0
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 52 AYSMIKDAEDKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLIIVMPSTCSMERRIVL 111
A M++ + + + N G L I G L+ + E+ +L
Sbjct: 160 ALGMVETMR----LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNI---VRKQEQADLL 212
Query: 112 RALGAEIILADSALRFEEIL 131
+A GA + ++ F + L
Sbjct: 213 KAQGAVHVCNAASPTFMQDL 232
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 29.5 bits (66), Expect = 1.2
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 190 GAGRFLKE-NNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDIDILDE---- 244
G G FL+ I+ GV+ +E + K ++ + L +
Sbjct: 51 GRGEFLELCKEEGIESIGVDINEDMI-------KFCEGKFNVVKSDAIEYLKSLPDKYLD 103
Query: 245 VITVSH 250
+ +SH
Sbjct: 104 GVMISH 109
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY
crystallography, putative translation factor, PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: d.115.1.1 PDB: 1kk9_A
Length = 206
Score = 28.6 bits (65), Expect = 2.0
Identities = 12/50 (24%), Positives = 14/50 (28%), Gaps = 8/50 (16%)
Query: 146 LLRQFENP-----ANP--KIHYETTGPEIWQDSGGKVDAFISGIGTGGTV 188
LL P E+ EI +VD I G G G
Sbjct: 132 LLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHG-GYLGQK 180
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 28.7 bits (65), Expect = 2.3
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 61 DKGLITPGKTTLIEVTSGNTGVG-LAF-IAAARGYNLIIVMPSTCSMERRIVLRALGAEI 118
D+ + G+T LI+ G GVG +A IA ARG + +T +R LGA
Sbjct: 144 DRAQVQDGQTVLIQGGGG--GVGHVAIQIALARGARVF----ATARGSDLEYVRDLGATP 197
Query: 119 I 119
I
Sbjct: 198 I 198
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 28.6 bits (65), Expect = 2.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 11/42 (26%)
Query: 110 VLRALGAEIILADSALRF--------EEI---LEKGEEILKK 140
VL A+G + +A A+R EE+ L+K EEIL
Sbjct: 334 VLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSF 375
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 28.2 bits (63), Expect = 2.4
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 14/73 (19%)
Query: 182 IGTGGTVTGAGRFLKE-NNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGIIPSVLDID 240
IG G +V G+E A ++ H++ G +D+
Sbjct: 39 IGCSS-----GALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDI-----ETMDMP 88
Query: 241 ILDE---VITVSH 250
+E +
Sbjct: 89 YEEEQFDCVIFGD 101
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus}
SCOP: c.37.1.1
Length = 203
Score = 28.3 bits (64), Expect = 2.4
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 13/55 (23%)
Query: 111 LRALGAEIILADSALRFEEILEKGEEILKKT-----PDGYLLRQ------FENPA 154
LR+ G ++ D+ E EE LK+ G L R+ F +P
Sbjct: 28 LRSWGYPVLDLDALAA--RARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPE 80
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 28.7 bits (64), Expect = 2.8
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 61 DKGLITPGKTTLIEVTSGNTGVGLAFIAAARGYNLII-VMPSTCSMERRIVLRALG-AEI 118
+G + PG++ LI SG GVG A IA A + + + R E
Sbjct: 1661 VRGRMQPGESVLIHSGSG--GVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDET 1718
Query: 119 ILADS-ALRFEE 129
A+S FE+
Sbjct: 1719 CFANSRDTSFEQ 1730
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 28.0 bits (63), Expect = 3.0
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 15/74 (20%)
Query: 182 IGTGGTVTGAGRFLKE---NNPDIKVYGVEPSESAVLNGGQRGK-------HLIQGIGAG 231
IG G G L + P+ G+E V ++
Sbjct: 41 IGFGM-----GASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVE 95
Query: 232 IIPSVLDIDILDEV 245
++ ++ + L V
Sbjct: 96 VLHKMIPDNSLRMV 109
>1n2a_A Glutathione S-transferase; HET: GTS; 1.90A {Escherichia coli} SCOP:
a.45.1.1 c.47.1.5 PDB: 1a0f_A*
Length = 201
Score = 27.6 bits (62), Expect = 3.4
Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 17/67 (25%)
Query: 100 PSTCSMERRIVLRALGA--EIILADSALRFEEILEKGEEILKKTP----------DGYLL 147
P CS+ I LR G ++ D L + LE G++ P DG LL
Sbjct: 7 PGACSLASHITLRESGKDFTLVSVD--LMKKR-LENGDDYFAVNPKGQVPALLLDDGTLL 63
Query: 148 RQFENPA 154
E A
Sbjct: 64 --TEGVA 68
>1f2e_A Glutathione S-transferase; GST complexed with glutathione,
thioredoxin superfamily fold transferase; HET: GSH;
2.30A {Sphingomonas paucimobilis} SCOP: a.45.1.1
c.47.1.5
Length = 201
Score = 27.5 bits (62), Expect = 3.8
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 17/68 (25%)
Query: 99 MPSTCSMERRIVLRALGA--EIILADSALRFEEILEKGEEILKKTP----------DGYL 146
P CS+ I LR GA E + D A+R E GE+ L P G
Sbjct: 6 SPGACSLAPHIALRETGADFEAVKVDLAVRKT---EAGEDFLTVNPSGKVPALTLDSGET 62
Query: 147 LRQFENPA 154
L ENPA
Sbjct: 63 L--TENPA 68
>2dsa_A Glutathione S-transferase; HET: GSH HPX; 2.10A {Burkholderia
xenovorans} PDB: 2gdr_A*
Length = 203
Score = 27.6 bits (62), Expect = 4.1
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 99 MPSTCSMERRIVLRALGA--EIILADSALRFEEILEKGEEILKKTPDGY 145
P CS+ I LR G E++ D L ++ G++ L+ P GY
Sbjct: 6 SPGACSLSPHIALREAGLNFELVQVD--LASKK-TASGQDYLEVNPAGY 51
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 27.6 bits (61), Expect = 4.5
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 66 TPGKTTLIEVTSGNTGVGLAFIA---AARGYNLII 97
T + + VT GN G+G I ++ G +++
Sbjct: 10 TKRRCAV--VTGGNKGIGFE-ICKQLSSNGIMVVL 41
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 27.5 bits (62), Expect = 4.5
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 12/53 (22%)
Query: 69 KTTLIEVTSGNTGVGLAF--IAAARGYNLIIVMPSTCSMERRI-VLRALGAEI 118
+I T ++G+G + A G + R L + +
Sbjct: 2 SLIVI--TGASSGLGAELAKLYDAEGKATYLTG-------RSESKLSTVTNCL 45
>4g9h_A Glutathione S-transferase; GST, enzyme function initiative,
structural genomics; HET: GSH; 2.10A {Yersinia pestis}
Length = 211
Score = 27.2 bits (61), Expect = 4.6
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 17/67 (25%)
Query: 100 PSTCSMERRIVLRALGA--EIILADSALRFEEILEKGEEILKKTP----------DGYLL 147
P CS+ IVLR G I D L ++ E G + L P DG LL
Sbjct: 10 PGACSLSPHIVLREAGLDFSIERVD--LVTKK-TETGADYLSINPKGQVPALVLDDGSLL 66
Query: 148 RQFENPA 154
E A
Sbjct: 67 --TEGVA 71
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open
twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis
saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Length = 341
Score = 27.4 bits (60), Expect = 5.2
Identities = 28/217 (12%), Positives = 60/217 (27%), Gaps = 30/217 (13%)
Query: 16 GNTPMVYLNNVVD--GCVARIAAK---LETMEPCSSVKDRIAYSMIKDAEDKGLITPGKT 70
G +P+ LN + G + AK + K R ++ D + T
Sbjct: 14 GPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGD-----YT 68
Query: 71 TLIEVTSGNTGVGLAFIAAARGYNL--IIVM-----------PSTCSMERRIVLRALGAE 117
L+ + + A A +++ + + R +GA+
Sbjct: 69 HLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGAD 128
Query: 118 IIL---ADSALRFEEILEKGEEILKKTPDGYLL-RQFENPANPKIHYETTGPEIWQ---D 170
+ + + +E+ Y + + + E+ +
Sbjct: 129 VRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQEVE 188
Query: 171 SGGKVDAFISGIGTGGTVTGAGRFLKENNPDIKVYGV 207
G K D + TG T G + + V +
Sbjct: 189 LGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAI 225
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 27.5 bits (60), Expect = 5.2
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 168 WQDSGGKVDAFISGIGTGGTVTGAGRFLKE---NNPDIKVYGVEPSES 212
+ G+ D +GTG GR + + N+ + G++P +
Sbjct: 17 LTEIIGQFDRVHIDLGTGD-----GRNIYKLAINDQNTFYIGIDPVKE 59
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 27.4 bits (61), Expect = 5.3
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 166 EIWQDSGGKVDAFISG-----IGTGGTVTGA-GRFLKENNPDIKVYGVEPSES 212
+ + S +G G TG FL E P+ V+ SE
Sbjct: 30 DFYGVSVSIASVDTENPDILDLGAG---TGLLSAFLMEKYPEATFTLVDMSEK 79
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A
{Thermotoga maritima}
Length = 159
Score = 26.7 bits (60), Expect = 5.8
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 110 VLRALGAEIILADSALRFEEILEKGEEIL--KKTPDGYLLRQ 149
L+ +G + + A + E ++ + EI P LL Q
Sbjct: 98 ALKEIGKDCPVVGLAKKEETVVFENREIHLPHDHPVLRLLVQ 139
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 27.2 bits (59), Expect = 6.4
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 172 GGKVDAFISGIGTGGTVTGAG------RFLKENNPDIKVYGV 207
VD F+ +G GG G G + ++E V +
Sbjct: 145 EVIVDQFLICLGAGGG-VGTGWGSLVLQLIREQFFPCPVSML 185
>2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A
{Xylella fastidiosa}
Length = 207
Score = 26.8 bits (60), Expect = 6.8
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 15/64 (23%)
Query: 100 PSTCSMERRIVLRALGA--EIILADSALRFEEILEKGEEILKKTPDGYL-------LRQF 150
P CS+ I+LR G+ ++ D + K E L P G +
Sbjct: 9 PGACSLADHILLRWSGSSFDLQFLD----HQS--MKAPEYLALNPSGAVPALQVGDWVLT 62
Query: 151 ENPA 154
+N A
Sbjct: 63 QNAA 66
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro
transferase; HET: 2HI SAH; 2.35A {Medicago truncatula}
PDB: 1zga_A* 1zhf_A* 1zgj_A*
Length = 358
Score = 27.1 bits (60), Expect = 7.1
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 87 IAAARGYNLIIVMPSTCSMERRIVLRALGAEIILADSALRFEEILEKGEEILKKTPDGYL 146
+A++ + PS ++ R LR L A + ++ +E E+ E TP L
Sbjct: 51 LASSLKLH-----PSKVNILHRF-LRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKL 104
Query: 147 LR 148
L
Sbjct: 105 LI 106
>2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A
virulence facto LUNG infection; HET: MSE; 1.7A
{Streptococcus pneumoniae}
Length = 263
Score = 27.0 bits (60), Expect = 7.2
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 83 GLAFIAAARGYNLIIVMPST 102
+ + NLI+VMP+T
Sbjct: 62 NVERLLRG--TNLIVVMPNT 79
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A
{Thermus thermophilus}
Length = 332
Score = 26.7 bits (60), Expect = 9.0
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 186 GTV-TGAGRFLKENNPDIKVYGVEPSESAVLNGGQRGKHLIQGIGAGII----PSVLDID 240
GTV + + E ++ +GV P VL R + I ++ +L+ D
Sbjct: 12 GTVGSAFYNLVLERAEELSAFGVVPRFLGVLV---RDPRKPRAIPQELLRAEPFDLLEAD 68
Query: 241 ILDEVI 246
++ E +
Sbjct: 69 LVVEAM 74
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate,
transferase; HET: PLP SLP; 1.55A {Rattus norvegicus}
PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Length = 432
Score = 26.8 bits (60), Expect = 9.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 110 VLRALGAEIILADSALRF 127
VL + G + +A +A+R
Sbjct: 386 VLLSCGIPVDVARNAVRL 403
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 26.4 bits (59), Expect = 9.6
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 15/64 (23%)
Query: 68 GKTTLIEVTSGNTGVGL--AFIAAARGYNLIIVMPSTC-SMER-RIVLRALGAEII---- 119
+T + +T N+G+G A A RG +I+ + R + ++
Sbjct: 16 QRTVV--ITGANSGLGAVTARELARRGATVIM----AVRDTRKGEAAARTMAGQVEVREL 69
Query: 120 -LAD 122
L D
Sbjct: 70 DLQD 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.398
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,596,290
Number of extensions: 301911
Number of successful extensions: 1041
Number of sequences better than 10.0: 1
Number of HSP's gapped: 968
Number of HSP's successfully gapped: 93
Length of query: 280
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 188
Effective length of database: 4,133,061
Effective search space: 777015468
Effective search space used: 777015468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)