BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023566
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DUF|A Chain A, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|B Chain B, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|C Chain C, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
pdb|4DUF|D Chain D, Cytochrome P450 Bm3h-2g9 Mri Sensor Bound To Serotonin
Length = 471
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GLL S H
Sbjct: 35 ELGEIFKFEAPGRVTCYLSSQRLIKEACDESRFD-KNLSQALKFVRDFAGDGLLTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|4DUC|A Chain A, Cytochrome P450 Bm3h-2g9 Mri Sensor, No Ligand
pdb|4DUC|B Chain B, Cytochrome P450 Bm3h-2g9 Mri Sensor, No Ligand
Length = 472
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GLL S H
Sbjct: 36 ELGEIFKFEAPGRVTCYLSSQRLIKEACDESRFD-KNLSQALKFVRDFAGDGLLTSWTHE 94
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 95 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 147
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 148 RLTLDTIGLCGFN 160
>pdb|4DUD|A Chain A, Cytochrome P450 Bm3h-2g9c6 Mri Sensor, No Ligand
pdb|4DUD|B Chain B, Cytochrome P450 Bm3h-2g9c6 Mri Sensor, No Ligand
pdb|4DUE|A Chain A, Cytochrome P450 Bm3h-2g9c6 Mri Sensor Bound To Serotonin
pdb|4DUE|B Chain B, Cytochrome P450 Bm3h-2g9c6 Mri Sensor Bound To Serotonin
Length = 471
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GLL S H
Sbjct: 35 ELGEIFKFEAPGRVTCYLSSQRLIKEACDESRFD-KNLSQALKFVRDFAGDGLLTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|2UWH|A Chain A, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|B Chain B, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|C Chain C, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|D Chain D, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|E Chain E, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
pdb|2UWH|F Chain F, Cytochrome P450 Bm3 Mutant In Complex With Palmitic Acid
Length = 458
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFD-KNLSQALKFVRDFFGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|3NPL|A Chain A, Structure Of Ru(Bpy)2(A-Phen)(K97c) P450 Bm3 Heme Domain,
A Ruthenium Modified P450 Bm3 Mutant
pdb|3NPL|B Chain B, Structure Of Ru(Bpy)2(A-Phen)(K97c) P450 Bm3 Heme Domain,
A Ruthenium Modified P450 Bm3 Mutant
Length = 470
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 36 ELGEIFKFEAPGRVTRYLSSQRLIKEAADESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 94
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 95 KNWCKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 147
Query: 211 EVSADVISRASFG 223
++ D I + F
Sbjct: 148 RLTLDTIGLSGFN 160
>pdb|4DU2|B Chain B, Cytochrome P450 Bm3h-B7 Mri Sensor Bound To Dopamine
pdb|4DU2|A Chain A, Cytochrome P450 Bm3h-B7 Mri Sensor Bound To Dopamine
Length = 470
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + + G+GL S H
Sbjct: 36 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQAPKFVRDLAGDGLFTSWTHE 94
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 95 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 147
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 148 RLTLDTIGLCGFN 160
>pdb|1YQO|A Chain A, T268a Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1YQO|B Chain B, T268a Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFD-KNLSQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|1YQP|A Chain A, T268n Mutant Cytochrome Domain Of Flavocytochrome P450 Bm3
pdb|1YQP|B Chain B, T268n Mutant Cytochrome Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFD-KNLSQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|1P0X|A Chain A, F393y Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1P0X|B Chain B, F393y Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFD-KNLSQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|1P0W|A Chain A, F393w Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1P0W|B Chain B, F393w Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFD-KNLSQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|2BMH|A Chain A, Modeling Protein-Substrate Interactions In The Heme Domain
Of Cytochrome P450bm-3
pdb|2BMH|B Chain B, Modeling Protein-Substrate Interactions In The Heme Domain
Of Cytochrome P450bm-3
pdb|1BU7|A Chain A, Cryogenic Structure Of Cytochrome P450bm-3 Heme Domain
pdb|1BU7|B Chain B, Cryogenic Structure Of Cytochrome P450bm-3 Heme Domain
pdb|2J1M|A Chain A, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J1M|B Chain B, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J4S|A Chain A, P450 Bm3 Heme Domain In Complex With Dmso
pdb|2J4S|B Chain B, P450 Bm3 Heme Domain In Complex With Dmso
Length = 455
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFD-KNLSQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|1P0V|A Chain A, F393a Mutant Heme Domain Of Flavocytochrome P450 Bm3
pdb|1P0V|B Chain B, F393a Mutant Heme Domain Of Flavocytochrome P450 Bm3
Length = 455
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFD-KNLSQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|4DTW|B Chain B, Cytochrome P450 Bm3h-8c8 Mri Sensor Bound To Serotonin
pdb|4DTW|A Chain A, Cytochrome P450 Bm3h-8c8 Mri Sensor Bound To Serotonin
pdb|4DTY|B Chain B, Cytochrome P450 Bm3h-8c8 Mri Sensor, No Ligand
pdb|4DTY|A Chain A, Cytochrome P450 Bm3h-8c8 Mri Sensor, No Ligand
pdb|4DTZ|A Chain A, Cytochrome P450 Bm3h-8c8 Mri Sensor Bound To Dopamine
pdb|4DTZ|B Chain B, Cytochrome P450 Bm3h-8c8 Mri Sensor Bound To Dopamine
Length = 469
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQAPKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|1JME|A Chain A, Crystal Structure Of Phe393his Cytochrome P450 Bm3
pdb|1JME|B Chain B, Crystal Structure Of Phe393his Cytochrome P450 Bm3
Length = 455
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFD-KNLSQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|3EKB|A Chain A, Crystal Structure Of The A264c Mutant Heme Domain Of
Cytochrome P450 Bm3
pdb|3EKB|B Chain B, Crystal Structure Of The A264c Mutant Heme Domain Of
Cytochrome P450 Bm3
Length = 470
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|1BVY|A Chain A, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
pdb|1BVY|B Chain B, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
Length = 458
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFD-KNLSQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|4DUA|A Chain A, Cytochrome P450 Bm3h-9d7 Mri Sensor, No Ligand
pdb|4DUA|B Chain B, Cytochrome P450 Bm3h-9d7 Mri Sensor, No Ligand
Length = 471
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFD-KNLSQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASF 222
++ D I F
Sbjct: 147 RLTLDTIGLCGF 158
>pdb|1JPZ|A Chain A, Crystal Structure Of A Complex Of The Heme Domain Of
P450bm- 3 With N-Palmitoylglycine
pdb|1JPZ|B Chain B, Crystal Structure Of A Complex Of The Heme Domain Of
P450bm- 3 With N-Palmitoylglycine
pdb|1ZO9|A Chain A, Crystal Structure Of The Wild Type Heme Domain Of P450bm-3
With N- Palmitoylmethionine
pdb|1ZO9|B Chain B, Crystal Structure Of The Wild Type Heme Domain Of P450bm-3
With N- Palmitoylmethionine
Length = 473
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 38 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 96
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 97 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 149
Query: 211 EVSADVISRASF 222
++ D I F
Sbjct: 150 RLTLDTIGLCGF 161
>pdb|1ZO4|A Chain A, Crystal Structure Of A328s Mutant Of The Heme Domain Of
P450bm-3
pdb|1ZO4|B Chain B, Crystal Structure Of A328s Mutant Of The Heme Domain Of
P450bm-3
Length = 473
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 38 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 96
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 97 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 149
Query: 211 EVSADVISRASF 222
++ D I F
Sbjct: 150 RLTLDTIGLCGF 161
>pdb|1ZOA|A Chain A, Crystal Structure Of A328v Mutant Of The Heme Domain Of
P450bm-3 With N-Palmitoylglycine
pdb|1ZOA|B Chain B, Crystal Structure Of A328v Mutant Of The Heme Domain Of
P450bm-3 With N-Palmitoylglycine
Length = 473
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 38 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 96
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 97 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 149
Query: 211 EVSADVISRASF 222
++ D I F
Sbjct: 150 RLTLDTIGLCGF 161
>pdb|1FAH|A Chain A, Structure Of Cytochrome P450
pdb|1FAH|B Chain B, Structure Of Cytochrome P450
Length = 471
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|2HPD|A Chain A, Crystal Structure Of Hemoprotein Domain Of P450bm-3, A
Prototype For Microsomal P450's
pdb|2HPD|B Chain B, Crystal Structure Of Hemoprotein Domain Of P450bm-3, A
Prototype For Microsomal P450's
pdb|1FAG|A Chain A, Structure Of Cytochrome P450
pdb|1FAG|B Chain B, Structure Of Cytochrome P450
pdb|1FAG|C Chain C, Structure Of Cytochrome P450
pdb|1FAG|D Chain D, Structure Of Cytochrome P450
Length = 471
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|2NNB|A Chain A, The Q403k Mutnat Heme Domain Of Flavocytochrome P450 Bm3
pdb|2NNB|B Chain B, The Q403k Mutnat Heme Domain Of Flavocytochrome P450 Bm3
Length = 471
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|1SMI|A Chain A, A Single Mutation Of P450 Bm3 Induces The Conformational
Rearrangement Seen Upon Substrate-Binding In Wild-Type
Enzyme
pdb|1SMI|B Chain B, A Single Mutation Of P450 Bm3 Induces The Conformational
Rearrangement Seen Upon Substrate-Binding In Wild-Type
Enzyme
pdb|1SMJ|A Chain A, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|B Chain B, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|C Chain C, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
pdb|1SMJ|D Chain D, Structure Of The A264e Mutant Of Cytochrome P450 Bm3
Complexed With Palmitoleate
Length = 471
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|4DUB|A Chain A, Cytochrome P450 Bm3h-9d7 Mri Sensor Bound To Dopamine
pdb|4DUB|B Chain B, Cytochrome P450 Bm3h-9d7 Mri Sensor Bound To Dopamine
Length = 472
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 36 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 94
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 95 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 147
Query: 211 EVSADVISRASF 222
++ D I F
Sbjct: 148 RLTLDTIGLCGF 159
>pdb|2IJ2|A Chain A, Atomic Structure Of The Heme Domain Of Flavocytochrome
P450- Bm3
pdb|2IJ2|B Chain B, Atomic Structure Of The Heme Domain Of Flavocytochrome
P450- Bm3
Length = 470
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|3BEN|A Chain A, Structure Of N-(12-Imidazolyl-Dodecanoyl)-L-Leucine
Inhibitor Bound To The Heme Domain Of Cytochrome
P450-Bm3
pdb|3BEN|B Chain B, Structure Of N-(12-Imidazolyl-Dodecanoyl)-L-Leucine
Inhibitor Bound To The Heme Domain Of Cytochrome
P450-Bm3
Length = 470
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 36 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 94
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 95 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 147
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 148 RLTLDTIGLCGFN 160
>pdb|3KX4|A Chain A, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
pdb|3KX4|B Chain B, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
Length = 470
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|2IJ3|A Chain A, Structure Of The A264h Mutant Of Cytochrome P450 Bm3
pdb|2IJ3|B Chain B, Structure Of The A264h Mutant Of Cytochrome P450 Bm3
Length = 470
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|2IJ4|A Chain A, Structure Of The A264k Mutant Of Cytochrome P450 Bm3
pdb|2IJ4|B Chain B, Structure Of The A264k Mutant Of Cytochrome P450 Bm3
Length = 470
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|3KX5|A Chain A, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
pdb|3KX5|B Chain B, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
Length = 470
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|3EKF|A Chain A, Crystal Structure Of The A264q Heme Domain Of Cytochrome
P450 Bm3
pdb|3EKF|B Chain B, Crystal Structure Of The A264q Heme Domain Of Cytochrome
P450 Bm3
Length = 470
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|3HF2|A Chain A, Crystal Structure Of The I401p Mutant Of Cytochrome P450
Bm3
pdb|3HF2|B Chain B, Crystal Structure Of The I401p Mutant Of Cytochrome P450
Bm3
Length = 482
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 36 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 94
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 95 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 147
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 148 RLTLDTIGLCGFN 160
>pdb|3M4V|A Chain A, Crystal Structure Of The A330p Mutant Of Cytochrome P450
Bm3
pdb|3M4V|B Chain B, Crystal Structure Of The A330p Mutant Of Cytochrome P450
Bm3
Length = 482
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 36 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 94
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 95 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 147
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 148 RLTLDTIGLCGFN 160
>pdb|3EKD|A Chain A, Crystal Structure Of The A264m Heme Domain Of Cytochrome
P450 Bm3
pdb|3EKD|B Chain B, Crystal Structure Of The A264m Heme Domain Of Cytochrome
P450 Bm3
Length = 470
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|3PSX|A Chain A, Crystal Structure Of The Kt2 Mutant Of Cytochrome P450 Bm3
pdb|3PSX|B Chain B, Crystal Structure Of The Kt2 Mutant Of Cytochrome P450 Bm3
Length = 487
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 41 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGLFTSWTHE 99
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 100 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 152
Query: 211 EVSADVISRASF 222
++ D I F
Sbjct: 153 RLTLDTIGLCGF 164
>pdb|3DGI|A Chain A, Crystal Structure Of F87aT268A MUTANT OF CYP BM3
pdb|3DGI|B Chain B, Crystal Structure Of F87aT268A MUTANT OF CYP BM3
Length = 461
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFD-KNLSQALKFVRDFAGDGLATSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|2X7Y|A Chain A, P450 Bm3 F87a In Complex With Dmso
pdb|2X7Y|B Chain B, P450 Bm3 F87a In Complex With Dmso
pdb|2X80|A Chain A, P450 Bm3 F87a In Complex With Dmso
pdb|2X80|B Chain B, P450 Bm3 F87a In Complex With Dmso
Length = 455
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFD-KNLSQALKFVRDFAGDGLATSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|3CBD|A Chain A, Directed Evolution Of Cytochrome P450 Bm3, To Octane
Monoxygenase 139-3
pdb|3CBD|B Chain B, Directed Evolution Of Cytochrome P450 Bm3, To Octane
Monoxygenase 139-3
Length = 455
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K G+GL S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFD-KNLSQALKFARDFAGDGLFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEYIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|3QI8|B Chain B, Evolved Variant Of Cytochrome P450 (Bm3, Cyp102a1)
pdb|3QI8|A Chain A, Evolved Variant Of Cytochrome P450 (Bm3, Cyp102a1)
Length = 472
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ LVKE D S K + G+GL S H
Sbjct: 36 ELGEIFKFEAPGRVTRYISSQRLVKEACDESRFDKNL-SQARKFVRDFAGDGLATSWTHE 94
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + R I+ P +KG +MV+ L++KW+ +N+D I V ED+
Sbjct: 95 KNWKKARNILLPRLSQQAMKGYHAMMVDIAVQLVQKWE-------RLNSDEHIEVPEDMT 147
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 148 RLTLDTIGLCGFN 160
>pdb|3KX3|A Chain A, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
pdb|3KX3|B Chain B, Crystal Structure Of Bacillus Megaterium Bm3 Heme Domain
Mut
Length = 470
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 12/133 (9%)
Query: 95 EYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLLRSNGH- 153
E G I+ + R Y++ L+KE D S K + G+G S H
Sbjct: 35 ELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNL-SQALKFVRDFAGDGEFTSWTHE 93
Query: 154 -CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD--IRVDEDLR 210
W + I+ P F +KG +MV+ L++KW+ +NAD I V ED+
Sbjct: 94 KNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWE-------RLNADEHIEVPEDMT 146
Query: 211 EVSADVISRASFG 223
++ D I F
Sbjct: 147 RLTLDTIGLCGFN 159
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 91 QWRKEYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSY-VTKRLAPMLGNGLLR 149
+ K+YG ++ + G + + + P+++K + L K Y V P G ++
Sbjct: 42 ECHKKYGKVWGFYDGQQPVLAITDPDMIKTV-------LVKECYSVFTNRRPFGPVGFMK 94
Query: 150 S-----NGHCWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNADIR 204
S W + R +++P F K+K MV I+ + L+R + EAE G +
Sbjct: 95 SAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRR--EAETG--KPVT 150
Query: 205 VDEDLREVSADVISRASFG 223
+ + S DVI+ SFG
Sbjct: 151 LKDVFGAYSMDVITSTSFG 169
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 91 QWRKEYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSY-VTKRLAPMLGNGLLR 149
+ K+YG ++ + G + + + P+++K + L K Y V P G ++
Sbjct: 41 ECHKKYGKVWGFYDGQQPVLAITDPDMIKTV-------LVKECYSVFTNRRPFGPVGFMK 93
Query: 150 S-----NGHCWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNADIR 204
S W + R +++P F K+K MV I+ + L+R + EAE G +
Sbjct: 94 SAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRR--EAETG--KPVT 149
Query: 205 VDEDLREVSADVISRASFG 223
+ + S DVI+ SFG
Sbjct: 150 LKDVFGAYSMDVITSTSFG 168
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 91 QWRKEYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSY-VTKRLAPMLGNGLLR 149
+ K+YG ++ + G + + + P+++K + L K Y V P G ++
Sbjct: 43 ECHKKYGKVWGFYDGQQPVLAITDPDMIKTV-------LVKECYSVFTNRRPFGPVGFMK 95
Query: 150 S-----NGHCWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNADIR 204
S W + R +++P F K+K MV I+ + L+R + EAE G +
Sbjct: 96 SAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRR--EAETG--KPVT 151
Query: 205 VDEDLREVSADVISRASFG 223
+ + S DVI+ SFG
Sbjct: 152 LKDVFGAYSMDVITSTSFG 170
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In Complex
With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With Bicalutamide
Bound
Length = 456
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 12/141 (8%)
Query: 89 FEQWRKEYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGLL 148
F W K+YGP+ + + + V PE VK+ S + K S + + L + G L
Sbjct: 16 FLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMSTKYN--KDSKMYRALQTVFGERLF 73
Query: 149 ------RSNGHCWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNAD 202
N W +QR+++ F + ++ E + L+ + +EA+
Sbjct: 74 GQGLVSECNYERWHKQRRVIDLAFSRSSLVSLMETFNEKAEQLV----EILEAKADGQTP 129
Query: 203 IRVDEDLREVSADVISRASFG 223
+ + + L + D++++A+FG
Sbjct: 130 VSMQDMLTYTAMDILAKAAFG 150
>pdb|3DBG|A Chain A, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3DBG|B Chain B, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3EL3|A Chain A, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
pdb|3EL3|B Chain B, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
Length = 467
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 94 KEYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLG-NGLLRSNG 152
+++G + G + V PEL + + + P + + L +LG G+ +NG
Sbjct: 52 RDHGDVVRIKLGPKTVYAVTNPELTGALALNPDYHIAGPLW--ESLEGLLGKEGVATANG 109
Query: 153 HCWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQ 190
+QR+ + P F +D + IM E L +WQ
Sbjct: 110 PLHRRQRRTIQPAFRLDAIPAYGPIMEEEAHALTERWQ 147
>pdb|1N97|A Chain A, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
pdb|1N97|B Chain B, Crystal Stucture Of Cyp175a1 From Thermus Thermophillus
Strain Hb27
Length = 389
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 131 KPSYVTKRLAPMLGNGLLRSNGHCWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQ 190
K ++ + L+ + G GLL G W + RK + F V+G M E + +W+
Sbjct: 63 KATFQYRALSRLTGRGLLTDWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWR 122
Query: 191 DYVEAEDGVNADIRVDEDLREVSADVISRASFGS 224
G D+ D ++ +S ++ RA FG
Sbjct: 123 -------GEERDL--DHEMLALSLRLLGRALFGK 147
>pdb|1WIY|A Chain A, Crystal Structure Analysis Of A 6-Coordinated Cytochorome
P450 From Thermus Thermophilus Hb8
pdb|1WIY|B Chain B, Crystal Structure Analysis Of A 6-Coordinated Cytochorome
P450 From Thermus Thermophilus Hb8
Length = 389
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 131 KPSYVTKRLAPMLGNGLLRSNGHCWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQ 190
K ++ + L+ + G GLL G W + RK + F V+G M E +W+
Sbjct: 63 KATFQYRALSRLTGRGLLTDWGKSWKEARKALKDPFLPKSVRGYREAMEEEAWAFFGEWR 122
Query: 191 DYVEAEDGVNADIRVDEDLREVSADVISRASFGS 224
G D+ D ++ +S ++ RA FG
Sbjct: 123 -------GEERDL--DHEMLALSLRLLGRALFGK 147
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 89 FEQWRKEYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDL-GKPSYVTKRLAPMLGNGL 147
F + +K+YGPIY+ G + + V +L KE+ D G+P T +A G+
Sbjct: 35 FFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLDIASNNRKGI 94
Query: 148 -LRSNGHCWAQQRKIVAPEF--FMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNADI 203
+G W R++ F F D + + I+ + L D + +G + DI
Sbjct: 95 AFADSGAHWQLHRRLAMATFALFKDGDQKLEKIICQEISTLC----DMLATHNGQSIDI 149
>pdb|3ZXS|A Chain A, Cryptochrome B From Rhodobacter Sphaeroides
pdb|3ZXS|B Chain B, Cryptochrome B From Rhodobacter Sphaeroides
pdb|3ZXS|C Chain C, Cryptochrome B From Rhodobacter Sphaeroides
Length = 522
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 1/107 (0%)
Query: 155 WAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNADIRVDEDLREVSA 214
W + RK + E+F +++ G+++E +P KW E D+ LR
Sbjct: 152 WTEGRKQLRMEWFYREMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPDLLRPRPLR-FEP 210
Query: 215 DVISRASFGSSNLRGKEIFAKLRSLQKAISNQSFLFGATNFAYACLP 261
D RA R F +LR A L +F LP
Sbjct: 211 DAEVRAVLDLVEARFPRHFGRLRPFHWATDRAEALRALDHFIRESLP 257
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 14/90 (15%)
Query: 76 IVAHDYTSTLFPYFEQWRKEYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYV 135
I A D + +L ++ + YGP++T GM+ + ++ E VKE +DLG+ +
Sbjct: 27 IDAKDISKSL----TKFSECYGPVFTVYLGMKPTVVLHGYEAVKEA----LVDLGE-EFA 77
Query: 136 TKRLAPML-----GNGLLRSNGHCWAQQRK 160
+ P+L G G+ SN W + R+
Sbjct: 78 GRGSVPILEKVSKGLGIAFSNAKTWKEMRR 107
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 89 FEQWRKEYGPIYTYSTGMRQHMYVNQPELVKE--MNQSISLDLGKPSYVTKRLAPMLGNG 146
F + K YGP++T GM + + E VKE ++ S +++R+ G G
Sbjct: 36 FTNFSKVYGPVFTVYFGMNPIVVFHGYEAVKEALIDNGEEFSGRGNSPISQRITK--GLG 93
Query: 147 LLRSNGHCWAQQRK 160
++ SNG W + R+
Sbjct: 94 IISSNGKRWKEIRR 107
>pdb|3LD6|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C Complex With Ketoconazole
pdb|3LD6|B Chain B, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C Complex With Ketoconazole
pdb|3JUS|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(Cyp51) In Complex With Econazole
pdb|3JUS|B Chain B, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(Cyp51) In Complex With Econazole
pdb|3JUV|A Chain A, Crystal Structure Of Human Lanosterol 14alpha-Demethylase
(C
Length = 461
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 65/150 (43%), Gaps = 15/150 (10%)
Query: 88 YFEQWRKEYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPMLGNGL 147
+ E ++YGP+++++ + Y+ + + S + DL ++ P+ G G+
Sbjct: 36 FLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFGKGV 95
Query: 148 LRSNGH-CWAQQRKIVAPEFFMDKVKGMVGIMVESTQPLLRKWQDYVEAEDGVNADIRVD 206
+ + +Q+K++ + K V I+ + T+ W G + + V
Sbjct: 96 AYDVPNPVFLEQKKMLKSGLNIAHFKQHVSIIEKETKEYFESW--------GESGEKNVF 147
Query: 207 EDLREVSADVISRASFGSSNLRGKEIFAKL 236
E L E+ +I A S L GKEI ++L
Sbjct: 148 EALSEL---IILTA---SHCLHGKEIRSQL 171
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 94 KEYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPML-----GNGLL 148
K YGP++T G++ + ++ E VKE +DLG+ + + + P+ G G++
Sbjct: 42 KVYGPVFTLYFGLKPIVVLHGYEAVKEA----LIDLGE-EFSGRGIFPLAERANRGFGIV 96
Query: 149 RSNGHCWAQQRK 160
SNG W + R+
Sbjct: 97 FSNGKKWKEIRR 108
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 94 KEYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPML-----GNGLL 148
K YGP++T G++ + ++ E VKE +DLG+ + + + P+ G G++
Sbjct: 40 KVYGPVFTLYFGLKPIVVLHGYEAVKEA----LIDLGE-EFSGRGIFPLAERANRGFGIV 94
Query: 149 RSNGHCWAQQRK 160
SNG W + R+
Sbjct: 95 FSNGKKWKEIRR 106
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 94 KEYGPIYTYSTGMRQHMYVNQPELVKEMNQSISLDLGKPSYVTKRLAPML-----GNGLL 148
K YGP++T G+ + + ++ E+VKE +DLG+ + + P+ G G++
Sbjct: 42 KIYGPVFTLYFGLERMVVLHGYEVVKEA----LIDLGE-EFSGRGHFPLAERANRGFGIV 96
Query: 149 RSNGHCWAQQRK 160
SNG W + R+
Sbjct: 97 FSNGKRWKEIRR 108
>pdb|1JOP|A Chain A, Yhch Protein (Hi0227)
pdb|1JOP|B Chain B, Yhch Protein (Hi0227)
pdb|1JOP|C Chain C, Yhch Protein (Hi0227)
pdb|1JOP|D Chain D, Yhch Protein (Hi0227)
pdb|1S4C|A Chain A, Yhch Protein (Hi0227) Copper Complex
pdb|1S4C|B Chain B, Yhch Protein (Hi0227) Copper Complex
pdb|1S4C|C Chain C, Yhch Protein (Hi0227) Copper Complex
pdb|1S4C|D Chain D, Yhch Protein (Hi0227) Copper Complex
Length = 155
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 171 VKGMVGIMVESTQPLLRKWQDYVEAED 197
++G I V +T P L K++DY EA+D
Sbjct: 75 IRGTENIEVGATYPNLSKYEDYNEADD 101
>pdb|2AU1|A Chain A, Crystal Structure Of Group A Streptococcus Mac-1
Orthorhombic Form
Length = 292
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 55 PEMQKIQANAAKPSSTSLASDIVAHDYTSTLFPYFEQ 91
PE QKI N + A D H S LF YF++
Sbjct: 75 PEKQKINFNGEQMFDVKEAIDTKNHQLDSKLFEYFKE 111
>pdb|1Y08|A Chain A, Structure Of The Streptococcal Endopeptidase Ides, A Novel
Cysteine Proteinase With Strict Specificity For Igg
Length = 323
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 55 PEMQKIQANAAKPSSTSLASDIVAHDYTSTLFPYFEQ 91
PE QKI N + A D H S LF YF++
Sbjct: 106 PEKQKINFNGEQMFDVKEAIDTKNHQLDSKLFEYFKE 142
>pdb|2AVW|A Chain A, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|B Chain B, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|C Chain C, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|D Chain D, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|E Chain E, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|F Chain F, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
Length = 311
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 55 PEMQKIQANAAKPSSTSLASDIVAHDYTSTLFPYFEQ 91
PE QKI N + A D H S LF YF++
Sbjct: 94 PEKQKINFNGEQMFDVKEAIDTKNHQLDSKLFEYFKE 130
>pdb|3R5T|A Chain A, Crystal Structure Of Holo-Viup
Length = 305
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 58 QKIQANAAKPSSTSLASDI-VAHDYTSTLFPYFEQWRK-----EYGPIYTYSTGMRQHMY 111
++I + A + T LA D V +T +FEQWRK + ++ + + +Y
Sbjct: 24 KRILSTAVTVTGTLLAIDAPVIASAATTQSTFFEQWRKLAELRQVKKLWPAGSVDLESVY 83
Query: 112 VNQPELV 118
V QP+L+
Sbjct: 84 VEQPDLI 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,147,052
Number of Sequences: 62578
Number of extensions: 322592
Number of successful extensions: 665
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 66
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)