BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023569
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 412 bits (1058), Expect = e-115, Method: Compositional matrix adjust.
Identities = 187/280 (66%), Positives = 227/280 (81%)
Query: 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARD 60
M+DHAR LVKANNL +VEVIEGSVEDI LPEKVDVIISEWMGYFLLRESMFDSVI ARD
Sbjct: 97 MADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGYFLLRESMFDSVISARD 156
Query: 61 RWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTK 120
RWLKPTGVMYPSHARMW+API+S + D+K+ D++GA+ DW++F E K+YYGVDM VLTK
Sbjct: 157 RWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTK 216
Query: 121 PFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGT 180
PF+EEQ+KYY+QT++W++L+P Q+IGT +VK +DC TA+V +I EVRS S I E T
Sbjct: 217 PFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIEEVRSNVTSVINMEHT 276
Query: 181 RLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNV 240
RLCGF GWFDV F G EDPAQQEIELTTAPS + THWGQQVF+ + V EGD+LN+
Sbjct: 277 RLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNL 336
Query: 241 SFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFYIE 280
M+RSKENHRL+E+E +CEI+E++G K ++IE
Sbjct: 337 GLLMSRSKENHRLMEIELNCEIKEASGNPKESFKKTYFIE 376
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 141/275 (51%), Gaps = 39/275 (14%)
Query: 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICAR 59
+SD+A +VKAN L VV +I+G VE++ LP EKVD+IISEWMGY L ESM ++V+ AR
Sbjct: 91 ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHAR 150
Query: 60 DRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLT 119
D+WL P G+++P A ++V I D++ +DY+ W+ + YG DMS +
Sbjct: 151 DKWLAPDGLIFPDRATLYVTAIE----DRQYKDYKI---HWW------ENVYGFDMSCI- 196
Query: 120 KPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEG 179
K ++ L + P Q++ A ++K +D T V+D+ L R +
Sbjct: 197 -------KDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDY 249
Query: 180 TRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP-STYNGTHWGQQVFLFRPSVRVSEGDDL 238
+F++ F + +T+P S Y THW Q VF + V G+++
Sbjct: 250 VH--ALVAYFNIEFT-----RCHKRTGFSTSPESPY--THWKQTVFYMEDYLTVKTGEEI 300
Query: 239 NVSFSMTRSKENHR----LLEVEFS---CEIREST 266
+ M + +N+R ++++F CE+ ST
Sbjct: 301 FGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCST 335
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 141/275 (51%), Gaps = 39/275 (14%)
Query: 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICAR 59
+SD+A +VKAN L VV +I+G VE++ LP EKVD+IISEWMGY L ESM ++V+ AR
Sbjct: 94 ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHAR 153
Query: 60 DRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLT 119
D+WL P G+++P A ++V I D++ +DY+ W+ + YG DMS +
Sbjct: 154 DKWLAPDGLIFPDRATLYVTAIE----DRQYKDYKI---HWW------ENVYGFDMSCI- 199
Query: 120 KPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEG 179
K ++ L + P Q++ A ++K +D T V+D+ L R +
Sbjct: 200 -------KDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDY 252
Query: 180 TRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP-STYNGTHWGQQVFLFRPSVRVSEGDDL 238
+F++ F + +T+P S Y THW Q VF + V G+++
Sbjct: 253 VH--ALVAYFNIEFT-----RCHKRTGFSTSPESPY--THWKQTVFYMEDYLTVKTGEEI 303
Query: 239 NVSFSMTRSKENHR----LLEVEFS---CEIREST 266
+ M + +N+R ++++F CE+ ST
Sbjct: 304 FGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCST 338
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 141/275 (51%), Gaps = 39/275 (14%)
Query: 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICAR 59
+SD+A +VKAN L VV +I+G VE++ LP EKVD+IISEWMGY L ESM ++V+ AR
Sbjct: 100 ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHAR 159
Query: 60 DRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLT 119
D+WL P G+++P A ++V I D++ +DY+ W+ + YG DMS +
Sbjct: 160 DKWLAPDGLIFPDRATLYVTAIE----DRQYKDYKI---HWW------ENVYGFDMSCI- 205
Query: 120 KPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEG 179
K ++ L + P Q++ A ++K +D T V+D+ L R +
Sbjct: 206 -------KDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDY 258
Query: 180 TRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP-STYNGTHWGQQVFLFRPSVRVSEGDDL 238
+F++ F + +T+P S Y THW Q VF + V G+++
Sbjct: 259 VH--ALVAYFNIEFT-----RCHKRTGFSTSPESPY--THWKQTVFYMEDYLTVKTGEEI 309
Query: 239 NVSFSMTRSKENHR----LLEVEFS---CEIREST 266
+ M + +N+R ++++F CE+ ST
Sbjct: 310 FGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCST 344
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 141/275 (51%), Gaps = 39/275 (14%)
Query: 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICAR 59
+SD+A +VKAN L VV +I+G VE++ LP EKVD+IISEWMGY L +SM ++V+ AR
Sbjct: 104 ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYQSMLNTVLHAR 163
Query: 60 DRWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLT 119
D+WL P G+++P A ++V I D++ +DY+ W+ + YG DMS +
Sbjct: 164 DKWLAPDGLIFPDRATLYVTAIE----DRQYKDYKI---HWW------ENVYGFDMSCI- 209
Query: 120 KPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEG 179
K ++ L + P Q++ A ++K +D T V+D+ L R +
Sbjct: 210 -------KDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDY 262
Query: 180 TRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP-STYNGTHWGQQVFLFRPSVRVSEGDDL 238
+F++ F + +T+P S Y THW Q VF + V G+++
Sbjct: 263 VH--ALVAYFNIEFT-----RCHKRTGFSTSPESPY--THWKQTVFYMEDYLTVKTGEEI 313
Query: 239 NVSFSMTRSKENHR----LLEVEFS---CEIREST 266
+ M + +N+R ++++F CE+ ST
Sbjct: 314 FGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCST 348
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 129/258 (50%), Gaps = 31/258 (12%)
Query: 4 HARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRW 62
A +++ N L+D + +I+G +E++ LP EKVDVIISEWMGYFLL ESM DSV+ A++++
Sbjct: 101 QAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKY 160
Query: 63 LKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPF 122
L G +YP + + + K D DD Y F MS +
Sbjct: 161 LAKGGSVYPDICTISLVAVSDV---NKHADRIAFWDDVYGF----------KMSCM---- 203
Query: 123 SEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRL 182
KK + ++ L P +I +K+IDC T ++ D+ E S F +++ T +
Sbjct: 204 ----KKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDL-EFSSDF--TLKITRTSM 256
Query: 183 C-GFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVS 241
C +G+FD++F E + +T P + THW Q VFL V G+ L
Sbjct: 257 CTAIAGYFDIYF----EKNCHNRVVFSTGPQS-TKTHWKQTVFLLEKPFSVKAGEALKGK 311
Query: 242 FSMTRSKENHRLLEVEFS 259
++ ++K++ R L V +
Sbjct: 312 VTVHKNKKDPRSLTVTLT 329
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 133/256 (51%), Gaps = 22/256 (8%)
Query: 4 HARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWL 63
AR +V+ N L+D V V+ G VE + LPE+VD I+SEWMGY LL ESM SV+ AR +WL
Sbjct: 120 QAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWL 179
Query: 64 KPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDW-YSFLKETKTYYGVDMSVLTKPF 122
K G++ P+ A +++ PI DQ + +W F + K +YGVDMS L + F
Sbjct: 180 KEGGLLLPASAELFIVPI----SDQ--------MLEWRLGFWSQVKQHYGVDMSCL-EGF 226
Query: 123 SEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIRE--VRSKFLSSIRGEGT 180
+ + + + L + V+ ++ S A ++ E V +F S G
Sbjct: 227 ATRCLMGHSEIVV-QGLSGEDVLARPQRFAQLELSRAGLEQELEAGVGGRFRCSCYGSAP 285
Query: 181 RLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNV 240
+ GF+ WF V F G +++ + L+T+P + THW Q + V+V + D++
Sbjct: 286 -MHGFAIWFQVTFPGGE---SEKPLVLSTSP-FHPATHWKQALLYLNEPVQVEQDTDVSG 340
Query: 241 SFSMTRSKENHRLLEV 256
++ S++N R L V
Sbjct: 341 EITLLPSRDNPRRLRV 356
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 117 bits (293), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 128/257 (49%), Gaps = 31/257 (12%)
Query: 5 ARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWL 63
A +++ N L+D + +I+G +E++ LP EKVDVIISEWMGYFLL ESM DSV+ A+ ++L
Sbjct: 83 AMDIIRLNKLEDTIVLIKGKIEEVSLPVEKVDVIISEWMGYFLLFESMLDSVLYAKSKYL 142
Query: 64 KPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFS 123
G +YP + + + K D DD Y F +MS +
Sbjct: 143 AKGGSVYPDICTISLVAVSDV---SKHADRIAFWDDVYGF----------NMSCM----- 184
Query: 124 EEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGTRLC 183
KK + ++ + +I +K+IDC T ++ D+ E S F ++R T +C
Sbjct: 185 ---KKAVIPEAVVEVVDHKTLISDPCDIKHIDCHTTSISDL-EFSSDF--TLRTTKTAMC 238
Query: 184 -GFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSF 242
+G+FD++F E + +T P + THW Q +FL V G+ L
Sbjct: 239 TAVAGYFDIYF----EKNCHNRVVFSTGPQS-TKTHWKQTIFLLEKPFPVKAGEALKGKI 293
Query: 243 SMTRSKENHRLLEVEFS 259
++ ++K++ R L V +
Sbjct: 294 TVHKNKKDPRSLIVTLT 310
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 21/278 (7%)
Query: 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARD 60
M+ HA LVK+NNL D + VI G VE++ LPE+VD+IISE MGY L E M +S + A+
Sbjct: 75 MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAK- 133
Query: 61 RWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTK 120
++LKP+G M+P+ + +AP +Q + + WY +++GVD+S L
Sbjct: 134 KYLKPSGNMFPTIGDVHLAPFTD---EQLYMEQFTKANFWYQ-----PSFHGVDLSALRG 185
Query: 121 PFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGT 180
+E Y+ Q + + +++ +V ++ A D+ + F + G
Sbjct: 186 AAVDE---YFRQPVV--DTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGL 240
Query: 181 RLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNV 240
+ G + WFDV F GS + L+TAP T THW Q LF+ + GD L+
Sbjct: 241 -VHGLAFWFDVAFIGSI-----MTVWLSTAP-TEPLTHWYQVRCLFQSPLFAKAGDTLSG 293
Query: 241 SFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFY 278
+ + +K + + + S L +KN F+
Sbjct: 294 TCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFF 331
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 21/278 (7%)
Query: 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARD 60
M+ HA LVK+NNL D + VI G VE++ LPE+VD+IISE MGY L E M +S + A+
Sbjct: 80 MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAK- 138
Query: 61 RWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTK 120
++LKP+G M+P+ + +AP +Q + + WY +++GVD+S L
Sbjct: 139 KYLKPSGNMFPTIGDVHLAPFTD---EQLYMEQFTKANFWYQ-----PSFHGVDLSALRG 190
Query: 121 PFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGT 180
+E Y+ Q + + +++ +V ++ A D+ + F + G
Sbjct: 191 AAVDE---YFRQPVV--DTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGL 245
Query: 181 RLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNV 240
+ G + WFDV F GS + L+TAP T THW Q LF+ + GD L+
Sbjct: 246 -VHGLAFWFDVAFIGSI-----MTVWLSTAP-TEPLTHWYQVRCLFQSPLFAKAGDTLSG 298
Query: 241 SFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFY 278
+ + +K + + + S L +KN F+
Sbjct: 299 TCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFF 336
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 21/278 (7%)
Query: 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARD 60
M+ HA LVK+NNL D + VI G VE++ LPE+VD+IISE MGY L E M +S + A+
Sbjct: 79 MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAK- 137
Query: 61 RWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTK 120
++LKP+G M+P+ + +AP +Q + + WY +++GVD+S L
Sbjct: 138 KYLKPSGNMFPTIGDVHLAPFTD---EQLYMEQFTKANFWYQ-----PSFHGVDLSALRG 189
Query: 121 PFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGT 180
+E Y+ Q + + +++ +V ++ A D+ + F + G
Sbjct: 190 AAVDE---YFRQPVV--DTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGL 244
Query: 181 RLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNV 240
+ G + WFDV F GS + L+TAP T THW Q LF+ + GD L+
Sbjct: 245 -VHGLAFWFDVAFIGSI-----MTVWLSTAP-TEPLTHWYQVRCLFQSPLFAKAGDTLSG 297
Query: 241 SFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFY 278
+ + +K + + + S L +KN F+
Sbjct: 298 TCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFF 335
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 21/278 (7%)
Query: 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARD 60
M+ HA LVK+NNL D + VI G VE++ LPE+VD+IISE MGY L E M +S + A+
Sbjct: 84 MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAK- 142
Query: 61 RWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTK 120
++LKP+G M+P+ + +AP +Q + + WY +++GVD+S L
Sbjct: 143 KYLKPSGNMFPTIGDVHLAPFTD---EQLYMEQFTKANFWYQ-----PSFHGVDLSALRG 194
Query: 121 PFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGT 180
+E Y+ Q + + +++ +V ++ A D+ + F + G
Sbjct: 195 AAVDE---YFRQPVV--DTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGL 249
Query: 181 RLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNV 240
+ G + WFDV F GS + L+TAP T THW Q LF+ + GD L+
Sbjct: 250 -VHGLAFWFDVAFIGSI-----MTVWLSTAP-TEPLTHWYQVRCLFQSPLFAKAGDTLSG 302
Query: 241 SFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFY 278
+ + +K + + + S L +KN F+
Sbjct: 303 TCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFF 340
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 21/278 (7%)
Query: 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARD 60
M+ HA LVK+NNL D + VI G VE++ LPE+VD+IISE MGY L E M +S + A+
Sbjct: 192 MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAK- 250
Query: 61 RWLKPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTK 120
++LKP+G M+P+ + +AP +Q + + WY +++GVD+S L
Sbjct: 251 KYLKPSGNMFPTIGDVHLAPFTD---EQLYMEQFTKANFWYQ-----PSFHGVDLSALRG 302
Query: 121 PFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKFLSSIRGEGT 180
+E Y+ Q + + +++ +V ++ A D+ + F + G
Sbjct: 303 AAVDE---YFRQPVV--DTFDIRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGL 357
Query: 181 RLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNV 240
+ G + WFDV F GS + L+TAP T THW Q LF+ + GD L+
Sbjct: 358 -VHGLAFWFDVAFIGSI-----MTVWLSTAP-TEPLTHWYQVRCLFQSPLFAKAGDTLSG 410
Query: 241 SFSMTRSKENHRLLEVEFSCEIRESTGQILPPIKNKFY 278
+ + +K + + + S L +KN F+
Sbjct: 411 TCLLIANKRQSYDISIVAQVDQTGSKSSNLLDLKNPFF 448
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 131/265 (49%), Gaps = 31/265 (11%)
Query: 5 ARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWL 63
A+ LV+ N D + ++ G +ED+ LP KVD+IISEWMGYFLL ESM D+V+ ARD +L
Sbjct: 76 AKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYL 135
Query: 64 KPTGVMYPSHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFS 123
G+++P + +A GL D + +D + L+ W + YG D S PF
Sbjct: 136 VEGGLIFPDKCSIHLA----GLEDSQYKDEK--LNYW-------QDVYGFDYS----PFV 178
Query: 124 EEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATVDDIREVRSKF-LSSIRGEGTRL 182
L + + + V T+ + D +T + D+ +S F L++ R + +
Sbjct: 179 ----PLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDL-AFKSNFKLTAKRQD--MI 231
Query: 183 CGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNVSF 242
G WFD+ F ++ +E +T P THW Q +F F + GD +
Sbjct: 232 NGIVTWFDIVFPAPK---GKRPVEFSTGPHA-PYTHWKQTIFYFPDDLDAETGDTIEGEL 287
Query: 243 SMTRSKENHRLLEVEFSCEIRESTG 267
+ +++N+R L ++ S + ES G
Sbjct: 288 VCSPNEKNNRDLNIKISYKF-ESNG 311
>pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|C Chain C, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 657
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 18 VEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 77
V V+ G + PEK D+I+SE +G F E + + +LK GV P +
Sbjct: 433 VTVVSGDXREWKAPEKADIIVSELLGSFGDNE-LSPECLDGAQHFLKDDGVSIPGEYTSY 491
Query: 78 VAPIRS 83
+API S
Sbjct: 492 LAPISS 497
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 18 VEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMW 77
V V+ + + V PEK D+I+SE +G F E + + +LK GV P +
Sbjct: 413 VTVVSSDMREWVAPEKADIIVSELLGSFADNE-LSPECLDGAQHFLKDDGVSIPGEYTSF 471
Query: 78 VAPIRSG 84
+API S
Sbjct: 472 LAPISSS 478
>pdb|3UA3|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
pdb|3UA3|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
Length = 745
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 168 RSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYN--GTHWGQQVFL 225
RS + + L GF+G+FD+ + + L+ PST+ W V
Sbjct: 628 RSDSIEFVXDRNADLXGFAGYFDLQL--------YKTVXLSIEPSTHTPGXVSWFPAVIP 679
Query: 226 FRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQ-ILPPIKN 275
R +RV EGD +S + R +N + E+ E +++ G+ + PI+N
Sbjct: 680 LRDQLRVGEGD--RISLKIDRKVDNTGVW-YEWHVEKKKTNGESVSTPIQN 727
>pdb|3UA4|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
pdb|3UA4|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
Length = 745
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 168 RSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNG--THWGQQVFL 225
RS + + L GF+G+FD+ + + L+ PST+ W V
Sbjct: 628 RSDSIEFVMDRNADLMGFAGYFDLQL--------YKTVMLSIEPSTHTPGMVSWFPAVIP 679
Query: 226 FRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQ-ILPPIKN 275
R +RV EGD +S + R +N + E+ E +++ G+ + PI+N
Sbjct: 680 LRDQLRVGEGD--RISLKIDRKVDNTGVW-YEWHVEKKKTNGESVSTPIQN 727
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 158 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYN 215
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P Y+
Sbjct: 33 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLPEVYS 88
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 158 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 211
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 35 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 86
>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In
Complex With Crizotinib (Pf-02341066)
Length = 327
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 158 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 211
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 18 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 69
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 158 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 211
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 18 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 69
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 158 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 211
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 45 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 96
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 158 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 211
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 33 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 84
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 158 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 211
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 25 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 76
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 158 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 211
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 33 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 84
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 158 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 211
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 59 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 110
>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Nvp- Tae684
pdb|2XBA|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Pha-E429
Length = 315
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 158 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 211
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 10 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 61
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 158 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 211
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 19 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 70
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 158 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 211
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 19 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 70
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 158 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 211
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 36 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 87
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 158 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAP 211
T+++ D++EV K ++ IRG G F ++ G DP+ ++ + T P
Sbjct: 19 TSSISDLKEVPRKNITLIRGLGHG--AFGEVYEGQVSGMPNDPSPLQVAVKTLP 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,670,256
Number of Sequences: 62578
Number of extensions: 364286
Number of successful extensions: 900
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 36
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)