Query 023569
Match_columns 280
No_of_seqs 169 out of 1367
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:02:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1499 Protein arginine N-met 100.0 6.9E-59 1.5E-63 417.8 19.4 238 1-265 94-332 (346)
2 KOG1500 Protein arginine N-met 100.0 4.7E-47 1E-51 336.9 13.3 241 1-262 211-451 (517)
3 PF05185 PRMT5: PRMT5 arginine 100.0 5.9E-42 1.3E-46 325.1 19.2 209 6-263 231-447 (448)
4 KOG0822 Protein kinase inhibit 100.0 1.4E-28 3E-33 229.7 14.0 219 12-279 417-647 (649)
5 PTZ00357 methyltransferase; Pr 99.9 2.4E-22 5.3E-27 192.7 16.8 223 15-264 762-1038(1072)
6 KOG1501 Arginine N-methyltrans 99.8 9.8E-21 2.1E-25 174.0 9.5 200 1-228 101-320 (636)
7 KOG1501 Arginine N-methyltrans 99.5 1.5E-14 3.2E-19 133.6 8.9 211 4-249 400-624 (636)
8 COG4076 Predicted RNA methylas 98.6 1.7E-08 3.8E-13 84.4 1.4 81 2-85 67-147 (252)
9 COG4123 Predicted O-methyltran 98.0 9E-06 1.9E-10 71.8 5.6 69 1-69 80-166 (248)
10 PF12847 Methyltransf_18: Meth 97.8 4.1E-05 8.8E-10 58.7 4.9 70 1-70 37-108 (112)
11 PF05175 MTS: Methyltransferas 97.5 0.00016 3.4E-09 60.4 5.3 68 2-70 68-137 (170)
12 PRK00107 gidB 16S rRNA methylt 97.4 0.00041 8.8E-09 59.0 6.8 62 1-70 81-142 (187)
13 TIGR00138 gidB 16S rRNA methyl 97.4 0.00043 9.2E-09 58.6 6.4 62 1-70 78-139 (181)
14 PF13659 Methyltransf_26: Meth 97.1 0.00056 1.2E-08 52.7 3.9 69 2-70 36-112 (117)
15 PF13847 Methyltransf_31: Meth 97.0 0.0012 2.5E-08 53.8 5.3 71 1-75 40-112 (152)
16 PRK11207 tellurite resistance 96.9 0.0024 5.3E-08 54.5 6.0 67 1-69 64-130 (197)
17 smart00828 PKS_MT Methyltransf 96.8 0.0022 4.8E-08 55.5 5.7 67 1-70 35-101 (224)
18 PF01209 Ubie_methyltran: ubiE 96.8 0.0017 3.7E-08 57.1 4.7 65 1-69 84-149 (233)
19 PRK11805 N5-glutamine S-adenos 96.7 0.0033 7.1E-08 57.6 6.2 69 1-70 169-260 (307)
20 TIGR03533 L3_gln_methyl protei 96.7 0.0045 9.7E-08 56.1 7.0 69 1-70 157-248 (284)
21 PRK00377 cbiT cobalt-precorrin 96.7 0.0046 9.9E-08 52.8 6.6 64 1-70 77-142 (198)
22 PLN02244 tocopherol O-methyltr 96.7 0.0047 1E-07 57.3 7.2 67 1-70 153-220 (340)
23 PF02353 CMAS: Mycolic acid cy 96.6 0.0053 1.1E-07 55.3 6.6 66 2-71 98-164 (273)
24 PLN02232 ubiquinone biosynthes 96.6 0.0055 1.2E-07 50.6 6.2 66 1-70 9-78 (160)
25 PRK11873 arsM arsenite S-adeno 96.6 0.0068 1.5E-07 54.2 7.2 67 1-71 114-181 (272)
26 PRK15451 tRNA cmo(5)U34 methyl 96.6 0.0037 8E-08 55.3 5.1 68 1-70 94-161 (247)
27 TIGR01177 conserved hypothetic 96.5 0.0055 1.2E-07 56.6 6.3 68 1-69 216-290 (329)
28 TIGR00477 tehB tellurite resis 96.5 0.0051 1.1E-07 52.4 5.6 67 1-70 64-130 (195)
29 PF08241 Methyltransf_11: Meth 96.5 0.0019 4E-08 47.2 2.4 56 12-70 38-94 (95)
30 PRK15001 SAM-dependent 23S rib 96.4 0.0088 1.9E-07 56.4 6.8 69 1-69 264-336 (378)
31 PLN02781 Probable caffeoyl-CoA 96.3 0.0075 1.6E-07 53.1 5.5 72 2-79 106-184 (234)
32 TIGR00536 hemK_fam HemK family 96.3 0.013 2.9E-07 52.9 7.3 68 2-70 151-241 (284)
33 TIGR02752 MenG_heptapren 2-hep 96.3 0.012 2.6E-07 51.1 6.7 66 1-70 82-148 (231)
34 COG2226 UbiE Methylase involve 96.2 0.011 2.3E-07 52.2 6.0 63 1-67 87-150 (238)
35 PRK08287 cobalt-precorrin-6Y C 96.1 0.019 4.1E-07 48.3 7.0 62 1-70 67-128 (187)
36 TIGR02716 C20_methyl_CrtF C-20 96.1 0.013 2.9E-07 53.3 6.1 67 1-70 184-251 (306)
37 PRK11036 putative S-adenosyl-L 96.1 0.0096 2.1E-07 52.8 5.0 67 1-70 78-146 (255)
38 TIGR00406 prmA ribosomal prote 96.1 0.014 3E-07 52.9 6.1 63 1-70 194-256 (288)
39 PRK13944 protein-L-isoaspartat 96.0 0.016 3.5E-07 49.7 6.1 60 1-69 109-169 (205)
40 TIGR00740 methyltransferase, p 96.0 0.013 2.8E-07 51.4 5.6 69 1-71 91-159 (239)
41 PRK12335 tellurite resistance 96.0 0.014 3.1E-07 52.7 5.8 66 1-69 154-219 (287)
42 COG2813 RsmC 16S RNA G1207 met 96.0 0.021 4.6E-07 51.8 6.8 66 2-69 195-262 (300)
43 TIGR02469 CbiT precorrin-6Y C5 95.9 0.027 5.8E-07 43.3 6.5 65 1-72 55-121 (124)
44 TIGR00537 hemK_rel_arch HemK-r 95.9 0.029 6.2E-07 46.9 7.0 66 1-69 53-136 (179)
45 PRK15128 23S rRNA m(5)C1962 me 95.8 0.019 4.2E-07 54.4 6.3 72 1-73 255-339 (396)
46 PRK14967 putative methyltransf 95.8 0.032 6.9E-07 48.5 7.2 68 1-70 71-156 (223)
47 COG2230 Cfa Cyclopropane fatty 95.7 0.021 4.6E-07 51.5 5.8 68 2-73 108-176 (283)
48 PRK04457 spermidine synthase; 95.7 0.019 4.2E-07 51.3 5.4 70 1-70 102-174 (262)
49 PRK01544 bifunctional N5-gluta 95.7 0.019 4.2E-07 56.2 5.7 71 1-71 174-267 (506)
50 PRK09489 rsmC 16S ribosomal RN 95.6 0.029 6.2E-07 52.2 6.4 66 1-69 232-299 (342)
51 PLN02476 O-methyltransferase 95.6 0.021 4.6E-07 51.5 5.4 71 2-78 156-233 (278)
52 PRK14968 putative methyltransf 95.6 0.038 8.2E-07 46.0 6.4 70 1-70 57-145 (188)
53 PLN02396 hexaprenyldihydroxybe 95.6 0.02 4.3E-07 52.9 5.0 67 1-70 165-232 (322)
54 PF03848 TehB: Tellurite resis 95.5 0.04 8.7E-07 47.0 6.4 64 3-69 66-129 (192)
55 PRK00216 ubiE ubiquinone/menaq 95.5 0.037 8E-07 47.8 6.4 66 2-70 89-155 (239)
56 PRK13942 protein-L-isoaspartat 95.5 0.03 6.6E-07 48.4 5.7 62 1-72 113-176 (212)
57 TIGR00080 pimt protein-L-isoas 95.5 0.028 6E-07 48.6 5.5 60 1-70 114-174 (215)
58 PRK11783 rlmL 23S rRNA m(2)G24 95.4 0.021 4.6E-07 58.1 5.1 69 1-70 573-653 (702)
59 PRK14902 16S rRNA methyltransf 95.4 0.037 8.1E-07 53.2 6.6 68 2-70 288-376 (444)
60 PLN02233 ubiquinone biosynthes 95.4 0.048 1E-06 48.7 6.7 67 1-70 110-179 (261)
61 PRK00121 trmB tRNA (guanine-N( 95.4 0.038 8.2E-07 47.4 5.9 69 1-70 76-153 (202)
62 PF06325 PrmA: Ribosomal prote 95.4 0.015 3.3E-07 52.9 3.5 62 2-72 197-258 (295)
63 TIGR00446 nop2p NOL1/NOP2/sun 95.3 0.039 8.5E-07 49.3 6.0 69 1-70 108-196 (264)
64 PF13649 Methyltransf_25: Meth 95.2 0.0089 1.9E-07 45.0 1.3 65 1-67 36-101 (101)
65 COG2519 GCD14 tRNA(1-methylade 95.2 0.067 1.5E-06 47.4 6.8 60 2-69 132-191 (256)
66 PHA03412 putative methyltransf 95.1 0.048 1E-06 48.0 5.7 57 18-74 99-164 (241)
67 PRK00517 prmA ribosomal protei 95.1 0.044 9.5E-07 48.5 5.6 57 1-70 154-210 (250)
68 KOG4300 Predicted methyltransf 95.0 0.055 1.2E-06 46.6 5.6 67 1-70 111-179 (252)
69 PLN03075 nicotianamine synthas 95.0 0.062 1.4E-06 48.9 6.3 71 1-73 161-233 (296)
70 PRK14901 16S rRNA methyltransf 95.0 0.063 1.4E-06 51.6 6.7 69 1-70 289-381 (434)
71 TIGR03534 RF_mod_PrmC protein- 95.0 0.081 1.8E-06 46.2 6.9 41 1-42 123-163 (251)
72 PF06962 rRNA_methylase: Putat 94.9 0.053 1.2E-06 43.9 4.9 67 2-70 12-89 (140)
73 PRK14966 unknown domain/N5-glu 94.8 0.066 1.4E-06 51.0 6.1 40 1-42 287-328 (423)
74 PRK10909 rsmD 16S rRNA m(2)G96 94.7 0.063 1.4E-06 46.1 5.3 64 2-70 89-156 (199)
75 PF01170 UPF0020: Putative RNA 94.7 0.047 1E-06 46.0 4.4 64 2-65 74-143 (179)
76 PF01596 Methyltransf_3: O-met 94.6 0.054 1.2E-06 46.8 4.8 71 2-78 83-160 (205)
77 TIGR00091 tRNA (guanine-N(7)-) 94.6 0.085 1.8E-06 44.8 5.9 68 1-69 52-128 (194)
78 PTZ00098 phosphoethanolamine N 94.6 0.044 9.6E-07 49.0 4.3 55 15-70 98-153 (263)
79 COG4122 Predicted O-methyltran 94.6 0.078 1.7E-06 46.2 5.6 75 1-81 96-174 (219)
80 PRK14904 16S rRNA methyltransf 94.5 0.11 2.3E-06 50.2 6.9 70 1-71 287-375 (445)
81 PLN02336 phosphoethanolamine N 94.5 0.099 2.1E-06 50.6 6.7 64 2-70 302-366 (475)
82 COG2890 HemK Methylase of poly 94.4 0.1 2.2E-06 47.3 6.3 39 2-42 147-185 (280)
83 TIGR03704 PrmC_rel_meth putati 94.4 0.073 1.6E-06 47.3 5.2 66 1-70 122-213 (251)
84 PLN02589 caffeoyl-CoA O-methyl 94.3 0.1 2.2E-06 46.4 5.8 73 2-80 117-197 (247)
85 PRK00811 spermidine synthase; 94.3 0.1 2.2E-06 47.2 6.0 71 1-71 112-189 (283)
86 PRK15068 tRNA mo(5)U34 methylt 94.3 0.13 2.7E-06 47.5 6.7 54 14-70 170-223 (322)
87 COG2264 PrmA Ribosomal protein 94.3 0.068 1.5E-06 48.7 4.7 65 2-72 198-262 (300)
88 COG0116 Predicted N6-adenine-s 93.9 0.11 2.3E-06 48.8 5.4 54 1-54 266-321 (381)
89 PRK00312 pcm protein-L-isoaspa 93.9 0.17 3.6E-06 43.4 6.3 60 1-70 112-172 (212)
90 TIGR01934 MenG_MenH_UbiE ubiqu 93.7 0.16 3.4E-06 43.3 5.8 54 14-70 86-140 (223)
91 PLN02366 spermidine synthase 93.5 0.16 3.6E-06 46.5 5.9 78 1-78 127-211 (308)
92 KOG1540 Ubiquinone biosynthesi 93.5 0.25 5.4E-06 43.9 6.6 67 1-70 142-211 (296)
93 COG1092 Predicted SAM-dependen 93.4 0.17 3.7E-06 47.9 6.0 75 2-77 253-340 (393)
94 TIGR00563 rsmB ribosomal RNA s 93.4 0.22 4.9E-06 47.6 6.8 70 1-70 274-365 (426)
95 PF08242 Methyltransf_12: Meth 93.3 0.055 1.2E-06 40.3 2.0 63 3-69 34-99 (99)
96 cd02440 AdoMet_MTases S-adenos 93.3 0.25 5.4E-06 35.5 5.6 59 12-72 43-103 (107)
97 TIGR00095 RNA methyltransferas 93.3 0.19 4.1E-06 42.7 5.5 67 2-70 85-156 (189)
98 COG2227 UbiG 2-polyprenyl-3-me 93.2 0.099 2.2E-06 46.0 3.7 68 1-75 93-163 (243)
99 PRK07402 precorrin-6B methylas 93.1 0.31 6.6E-06 41.3 6.6 62 1-70 76-139 (196)
100 PF02475 Met_10: Met-10+ like- 93.1 0.15 3.3E-06 43.8 4.7 61 2-69 138-198 (200)
101 COG2518 Pcm Protein-L-isoaspar 93.0 0.31 6.7E-06 42.1 6.4 60 1-70 106-166 (209)
102 PF10672 Methyltrans_SAM: S-ad 93.0 0.1 2.2E-06 47.4 3.6 68 2-70 159-235 (286)
103 PRK09328 N5-glutamine S-adenos 93.0 0.28 6.1E-06 43.6 6.4 40 2-42 145-184 (275)
104 TIGR00452 methyltransferase, p 92.9 0.26 5.6E-06 45.4 6.3 53 15-70 170-222 (314)
105 PRK14903 16S rRNA methyltransf 92.8 0.24 5.2E-06 47.6 6.1 74 1-75 274-368 (431)
106 COG2521 Predicted archaeal met 92.7 0.12 2.6E-06 45.4 3.4 55 17-71 186-243 (287)
107 PRK11783 rlmL 23S rRNA m(2)G24 92.6 0.23 4.9E-06 50.7 5.9 42 1-42 268-312 (702)
108 PLN02672 methionine S-methyltr 92.5 0.3 6.4E-06 51.9 6.7 42 1-42 154-212 (1082)
109 KOG1271 Methyltransferases [Ge 92.5 0.25 5.5E-06 41.8 5.0 69 2-70 104-178 (227)
110 PF05401 NodS: Nodulation prot 92.3 0.31 6.8E-06 41.7 5.4 58 12-71 86-144 (201)
111 PRK13943 protein-L-isoaspartat 92.1 0.4 8.7E-06 44.3 6.4 59 1-69 117-176 (322)
112 PRK03612 spermidine synthase; 92.1 0.18 3.8E-06 49.7 4.3 73 1-73 333-415 (521)
113 PLN02336 phosphoethanolamine N 91.9 0.29 6.4E-06 47.3 5.5 61 10-71 77-140 (475)
114 PRK14121 tRNA (guanine-N(7)-)- 91.9 0.5 1.1E-05 44.7 6.8 69 1-70 158-232 (390)
115 PRK04266 fibrillarin; Provisio 91.7 0.41 8.9E-06 41.9 5.7 49 17-70 121-173 (226)
116 TIGR02072 BioC biotin biosynth 91.4 0.28 6.1E-06 42.1 4.4 52 16-70 80-132 (240)
117 PRK10901 16S rRNA methyltransf 91.3 0.57 1.2E-05 44.9 6.8 68 1-70 280-369 (427)
118 COG1041 Predicted DNA modifica 91.3 0.54 1.2E-05 43.6 6.2 68 1-69 231-306 (347)
119 COG2242 CobL Precorrin-6B meth 91.2 0.63 1.4E-05 39.5 6.1 66 2-76 71-138 (187)
120 PRK05134 bifunctional 3-demeth 91.0 0.55 1.2E-05 40.7 5.8 64 2-70 83-148 (233)
121 PLN02490 MPBQ/MSBQ methyltrans 90.9 0.4 8.8E-06 44.6 5.1 52 16-70 160-212 (340)
122 TIGR00417 speE spermidine synt 90.9 0.59 1.3E-05 41.8 6.1 71 2-72 109-185 (270)
123 PRK11188 rrmJ 23S rRNA methylt 90.8 0.46 9.9E-06 41.0 5.0 52 18-69 93-161 (209)
124 PRK08317 hypothetical protein; 90.8 0.7 1.5E-05 39.5 6.3 55 13-70 66-121 (241)
125 PRK01581 speE spermidine synth 90.3 0.52 1.1E-05 44.2 5.2 58 15-72 206-267 (374)
126 PHA03411 putative methyltransf 90.2 0.74 1.6E-05 41.5 6.0 27 17-43 110-136 (279)
127 PRK03522 rumB 23S rRNA methylu 90.0 0.81 1.8E-05 41.9 6.3 41 1-42 207-249 (315)
128 COG2520 Predicted methyltransf 89.9 0.66 1.4E-05 43.1 5.5 61 2-69 224-285 (341)
129 PRK11727 23S rRNA mA1618 methy 89.8 0.74 1.6E-05 42.5 5.8 43 2-44 151-200 (321)
130 PF01135 PCMT: Protein-L-isoas 89.7 0.27 5.8E-06 42.6 2.6 60 1-70 109-169 (209)
131 PF01564 Spermine_synth: Sperm 89.6 0.33 7.2E-06 43.0 3.3 71 2-72 113-190 (246)
132 COG0421 SpeE Spermidine syntha 89.5 0.65 1.4E-05 42.1 5.1 65 16-80 130-197 (282)
133 PRK06922 hypothetical protein; 89.3 0.57 1.2E-05 47.2 4.9 69 1-71 454-535 (677)
134 PF02527 GidB: rRNA small subu 89.1 1 2.3E-05 38.1 5.8 63 5-75 88-150 (184)
135 PRK01683 trans-aconitate 2-met 89.0 0.85 1.8E-05 40.2 5.5 52 17-71 77-128 (258)
136 PRK04338 N(2),N(2)-dimethylgua 88.9 0.82 1.8E-05 43.2 5.6 61 2-70 94-155 (382)
137 TIGR01983 UbiG ubiquinone bios 88.9 0.97 2.1E-05 38.7 5.7 65 2-70 80-146 (224)
138 PF12147 Methyltransf_20: Puta 88.7 1.3 2.8E-05 40.2 6.4 67 2-70 174-246 (311)
139 PRK10258 biotin biosynthesis p 88.7 0.53 1.1E-05 41.4 3.9 50 18-70 87-137 (251)
140 PLN02823 spermine synthase 88.3 0.86 1.9E-05 42.3 5.2 70 1-70 139-217 (336)
141 PRK14103 trans-aconitate 2-met 88.0 0.78 1.7E-05 40.5 4.6 50 18-70 74-123 (255)
142 COG0742 N6-adenine-specific me 87.7 1.7 3.6E-05 37.0 6.1 73 4-76 81-157 (187)
143 PF13578 Methyltransf_24: Meth 87.5 0.16 3.5E-06 38.4 -0.1 63 4-70 37-102 (106)
144 PF08704 GCD14: tRNA methyltra 87.3 1.2 2.5E-05 39.6 5.1 60 2-69 78-142 (247)
145 PF05148 Methyltransf_8: Hypot 87.2 0.58 1.3E-05 40.5 3.1 54 20-84 108-162 (219)
146 PF03602 Cons_hypoth95: Conser 86.8 0.57 1.2E-05 39.6 2.8 67 2-70 78-150 (183)
147 PF05971 Methyltransf_10: Prot 86.7 1.1 2.5E-05 40.8 4.8 43 2-44 139-188 (299)
148 KOG3045 Predicted RNA methylas 85.4 1.1 2.3E-05 40.2 3.8 55 19-84 213-268 (325)
149 KOG2904 Predicted methyltransf 85.4 2.4 5.3E-05 38.2 6.1 40 3-42 186-231 (328)
150 TIGR00479 rumA 23S rRNA (uraci 85.3 2.1 4.6E-05 40.9 6.3 42 1-43 326-372 (431)
151 TIGR02021 BchM-ChlM magnesium 85.2 1.8 3.9E-05 37.2 5.2 67 1-70 89-155 (219)
152 PRK11705 cyclopropane fatty ac 85.1 1.9 4.1E-05 40.8 5.7 63 2-71 203-265 (383)
153 PTZ00146 fibrillarin; Provisio 84.9 2.6 5.6E-05 38.4 6.2 59 7-70 172-234 (293)
154 PRK11524 putative methyltransf 84.6 0.9 2E-05 41.0 3.2 54 17-70 8-77 (284)
155 TIGR02085 meth_trns_rumB 23S r 84.6 2.1 4.6E-05 40.3 5.8 41 2-43 268-310 (374)
156 PRK13699 putative methylase; P 84.3 1 2.2E-05 39.4 3.2 53 18-70 2-69 (227)
157 smart00138 MeTrc Methyltransfe 82.2 0.9 1.9E-05 40.6 2.1 56 15-71 184-240 (264)
158 PRK11933 yebU rRNA (cytosine-C 82.1 3.5 7.5E-05 40.1 6.2 73 2-75 151-244 (470)
159 PRK13168 rumA 23S rRNA m(5)U19 81.6 4.2 9E-05 39.1 6.6 44 1-45 331-379 (443)
160 PRK11088 rrmA 23S rRNA methylt 78.6 3.1 6.8E-05 37.1 4.4 44 17-70 134-178 (272)
161 smart00650 rADc Ribosomal RNA 76.5 3.9 8.4E-05 33.6 4.1 38 2-42 48-86 (169)
162 PRK07580 Mg-protoporphyrin IX 76.4 7.1 0.00015 33.4 5.9 38 1-40 97-134 (230)
163 PF10294 Methyltransf_16: Puta 76.4 4.9 0.00011 33.4 4.7 64 2-68 81-151 (173)
164 KOG1270 Methyltransferases [Co 75.7 1.8 3.8E-05 38.8 1.9 63 1-70 123-192 (282)
165 KOG1663 O-methyltransferase [S 75.1 6.9 0.00015 34.3 5.3 76 2-84 111-193 (237)
166 TIGR00308 TRM1 tRNA(guanine-26 75.0 6.8 0.00015 37.0 5.7 61 2-70 82-144 (374)
167 PTZ00338 dimethyladenosine tra 73.6 4.5 9.8E-05 36.8 4.1 41 1-42 70-110 (294)
168 PRK13255 thiopurine S-methyltr 71.9 10 0.00022 32.8 5.8 52 16-68 97-150 (218)
169 COG2265 TrmA SAM-dependent met 71.6 5.2 0.00011 38.5 4.2 44 2-46 328-375 (432)
170 TIGR03840 TMPT_Se_Te thiopurin 70.7 14 0.0003 31.9 6.3 52 16-68 94-147 (213)
171 PF00891 Methyltransf_2: O-met 70.5 4.3 9.3E-05 35.3 3.1 53 15-70 142-196 (241)
172 COG0357 GidB Predicted S-adeno 69.9 8.2 0.00018 33.5 4.6 58 5-70 107-165 (215)
173 PRK14896 ksgA 16S ribosomal RN 69.8 4.6 9.9E-05 35.8 3.2 39 1-43 63-101 (258)
174 PF03712 Cu2_monoox_C: Copper 69.5 5.2 0.00011 32.8 3.2 29 221-249 78-106 (156)
175 TIGR03438 probable methyltrans 69.3 13 0.00029 33.7 6.2 69 1-70 100-174 (301)
176 PRK05031 tRNA (uracil-5-)-meth 69.2 5.9 0.00013 37.1 3.9 52 1-54 240-308 (362)
177 TIGR00438 rrmJ cell division p 68.3 11 0.00023 31.5 5.0 54 17-70 73-143 (188)
178 PF03059 NAS: Nicotianamine sy 66.6 13 0.00028 33.6 5.3 67 2-71 159-228 (276)
179 PF01234 NNMT_PNMT_TEMT: NNMT/ 65.9 4.1 8.9E-05 36.4 2.0 47 19-70 137-196 (256)
180 TIGR02143 trmA_only tRNA (urac 65.5 8.8 0.00019 35.8 4.3 42 1-43 231-289 (353)
181 COG4262 Predicted spermidine s 65.0 9.8 0.00021 35.9 4.3 68 12-80 341-414 (508)
182 COG0144 Sun tRNA and rRNA cyto 64.6 20 0.00044 33.5 6.5 73 3-76 196-291 (355)
183 PF04816 DUF633: Family of unk 61.5 14 0.0003 31.8 4.4 71 2-84 34-105 (205)
184 PF11899 DUF3419: Protein of u 59.8 11 0.00024 35.6 3.9 61 11-74 271-335 (380)
185 KOG3191 Predicted N6-DNA-methy 59.4 33 0.00072 29.3 6.1 38 3-42 82-119 (209)
186 PF00207 A2M: Alpha-2-macroglo 57.1 30 0.00065 25.3 5.1 37 216-252 50-86 (92)
187 PF05724 TPMT: Thiopurine S-me 56.9 39 0.00085 29.2 6.5 52 16-68 97-150 (218)
188 PF11968 DUF3321: Putative met 56.8 11 0.00023 32.9 2.9 48 20-68 87-139 (219)
189 PF05958 tRNA_U5-meth_tr: tRNA 55.8 13 0.00028 34.7 3.5 43 2-45 231-290 (352)
190 PF09445 Methyltransf_15: RNA 54.6 14 0.0003 30.7 3.1 41 2-42 34-78 (163)
191 PLN02585 magnesium protoporphy 53.9 30 0.00065 31.8 5.5 38 1-40 178-219 (315)
192 PRK00536 speE spermidine synth 52.4 15 0.00033 32.9 3.3 40 32-79 138-177 (262)
193 PRK06202 hypothetical protein; 51.2 21 0.00046 30.8 3.9 58 2-64 101-159 (232)
194 PF01739 CheR: CheR methyltran 51.1 19 0.00041 30.8 3.5 60 15-75 117-177 (196)
195 PF04298 Zn_peptidase_2: Putat 50.3 19 0.0004 31.5 3.3 41 2-42 40-81 (222)
196 PRK10611 chemotaxis methyltran 49.9 13 0.00029 33.7 2.5 60 14-74 202-263 (287)
197 KOG2361 Predicted methyltransf 49.7 19 0.00041 32.0 3.3 70 3-74 107-184 (264)
198 PRK05785 hypothetical protein; 49.6 32 0.00069 29.8 4.8 46 19-67 95-141 (226)
199 COG3129 Predicted SAM-dependen 48.2 28 0.0006 30.9 4.1 40 3-42 116-162 (292)
200 PF02005 TRM: N2,N2-dimethylgu 47.3 24 0.00051 33.4 3.9 61 2-69 87-150 (377)
201 PF13489 Methyltransf_23: Meth 47.0 15 0.00033 28.9 2.3 36 32-70 77-112 (161)
202 COG2263 Predicted RNA methylas 46.0 33 0.00071 29.4 4.1 40 2-45 81-121 (198)
203 PF10237 N6-adenineMlase: Prob 45.8 22 0.00047 29.5 3.0 36 32-70 85-120 (162)
204 PF04989 CmcI: Cephalosporin h 44.9 5.9 0.00013 34.2 -0.5 61 6-70 75-144 (206)
205 PF05891 Methyltransf_PK: AdoM 44.6 18 0.00039 31.5 2.4 66 3-70 92-158 (218)
206 PF08003 Methyltransf_9: Prote 43.8 60 0.0013 29.9 5.7 62 15-81 164-233 (315)
207 cd00918 Der-p2_like Several gr 43.2 65 0.0014 25.2 5.2 39 229-268 72-110 (120)
208 COG4106 Tam Trans-aconitate me 42.8 19 0.00041 31.6 2.2 52 13-69 73-125 (257)
209 KOG2730 Methylase [General fun 42.1 11 0.00024 33.0 0.7 39 2-40 129-172 (263)
210 KOG1709 Guanidinoacetate methy 41.7 34 0.00075 30.0 3.6 58 9-69 140-202 (271)
211 KOG1099 SAM-dependent methyltr 39.9 50 0.0011 29.3 4.4 53 18-70 91-160 (294)
212 COG2738 Predicted Zn-dependent 39.3 39 0.00084 29.0 3.5 41 2-42 43-84 (226)
213 PF07942 N2227: N2227-like pro 38.6 45 0.00098 30.0 4.1 52 15-70 143-199 (270)
214 cd03455 SAV4209 SAV4209 is a S 38.3 94 0.002 23.7 5.5 37 230-269 78-114 (123)
215 COG2384 Predicted SAM-dependen 37.9 35 0.00076 29.8 3.1 43 2-44 53-96 (226)
216 COG4798 Predicted methyltransf 37.8 38 0.00083 29.3 3.2 57 12-69 102-162 (238)
217 KOG1975 mRNA cap methyltransfe 37.6 32 0.00068 32.0 2.9 54 17-70 173-234 (389)
218 PRK10222 PTS system L-ascorbat 36.4 81 0.0018 22.9 4.5 36 3-40 5-41 (85)
219 cd00916 Npc2_like Niemann-Pick 36.3 95 0.0021 24.2 5.2 40 228-268 75-114 (123)
220 cd03446 MaoC_like MoaC_like 36.1 1E+02 0.0023 23.8 5.5 39 231-269 90-130 (140)
221 PRK15001 SAM-dependent 23S rib 35.9 95 0.0021 29.4 6.0 61 3-70 78-139 (378)
222 PF01861 DUF43: Protein of unk 35.6 82 0.0018 27.9 5.1 41 2-45 80-124 (243)
223 cd03452 MaoC_C MaoC_C The C-t 35.2 1E+02 0.0022 24.3 5.4 40 230-269 87-128 (142)
224 KOG4063 Major epididymal secre 35.1 91 0.002 25.6 4.9 39 230-269 108-146 (158)
225 COG0293 FtsJ 23S rRNA methylas 34.9 40 0.00086 29.1 3.0 53 18-70 87-156 (205)
226 PRK13256 thiopurine S-methyltr 34.6 60 0.0013 28.4 4.2 53 16-69 103-159 (226)
227 COG2213 MtlA Phosphotransferas 34.4 59 0.0013 30.9 4.2 35 2-39 396-430 (472)
228 PF06030 DUF916: Bacterial pro 34.2 1.6E+02 0.0035 22.9 6.2 40 230-269 21-60 (121)
229 PF06460 NSP13: Coronavirus NS 33.8 37 0.00079 30.6 2.6 51 19-69 107-165 (299)
230 KOG3567 Peptidylglycine alpha- 33.8 1.7E+02 0.0036 28.5 7.2 87 162-252 213-304 (501)
231 cd05564 PTS_IIB_chitobiose_lic 30.7 57 0.0012 24.2 3.0 39 1-41 15-54 (96)
232 cd03441 R_hydratase_like (R)-h 30.6 1.2E+02 0.0027 22.6 5.0 40 230-269 79-118 (127)
233 PRK13692 (3R)-hydroxyacyl-ACP 30.5 1E+02 0.0022 25.2 4.7 41 230-271 95-136 (159)
234 PF01189 Nol1_Nop2_Fmu: NOL1/N 30.0 92 0.002 28.0 4.7 71 4-75 125-221 (283)
235 PF05688 DUF824: Salmonella re 29.7 1.5E+02 0.0032 19.3 4.3 22 230-251 7-28 (47)
236 KOG3350 Uncharacterized conser 29.4 2.2E+02 0.0047 24.3 6.3 35 32-70 134-169 (217)
237 PF02390 Methyltransf_4: Putat 28.6 1.2E+02 0.0025 25.7 4.9 66 3-69 55-129 (195)
238 PF01728 FtsJ: FtsJ-like methy 28.4 26 0.00056 28.9 0.8 37 32-69 90-135 (181)
239 cd03453 SAV4209_like SAV4209_l 28.3 1.1E+02 0.0023 23.6 4.3 38 231-269 80-118 (127)
240 cd03451 FkbR2 FkbR2 is a Strep 28.2 1.5E+02 0.0033 23.0 5.3 39 231-269 91-132 (146)
241 PF03141 Methyltransf_29: Puta 27.9 59 0.0013 31.9 3.2 41 30-70 424-464 (506)
242 PRK10310 PTS system galactitol 27.2 85 0.0018 23.2 3.4 38 2-41 20-58 (94)
243 PRK13691 (3R)-hydroxyacyl-ACP 26.2 1.2E+02 0.0027 24.9 4.5 39 230-269 95-134 (166)
244 PF04254 DUF432: Protein of un 26.1 1.9E+02 0.0042 22.7 5.3 22 222-243 13-34 (123)
245 KOG3010 Methyltransferase [Gen 25.8 36 0.00077 30.3 1.2 34 31-68 98-131 (261)
246 KOG3201 Uncharacterized conser 25.8 52 0.0011 27.6 2.1 34 32-68 102-135 (201)
247 cd03454 YdeM YdeM is a Bacillu 24.8 1.8E+02 0.0039 22.6 5.1 38 231-269 88-129 (140)
248 PF06080 DUF938: Protein of un 24.8 77 0.0017 27.3 3.1 63 7-70 67-138 (204)
249 COG3897 Predicted methyltransf 24.7 1.6E+02 0.0034 25.5 4.8 59 3-69 116-175 (218)
250 PF07679 I-set: Immunoglobulin 24.7 2.3E+02 0.0049 19.6 5.3 34 226-265 6-39 (90)
251 PF01555 N6_N4_Mtase: DNA meth 24.6 47 0.001 27.8 1.7 37 34-70 1-53 (231)
252 PF05506 DUF756: Domain of unk 24.3 1.4E+02 0.003 21.6 4.0 28 228-258 49-76 (89)
253 PF03291 Pox_MCEL: mRNA cappin 23.5 52 0.0011 30.5 1.9 60 17-76 122-192 (331)
254 cd00916 Npc2_like Niemann-Pick 23.5 2.6E+02 0.0056 21.7 5.6 38 228-266 22-59 (123)
255 PRK00274 ksgA 16S ribosomal RN 23.2 66 0.0014 28.7 2.5 27 16-42 87-114 (272)
256 cd03330 Macro_2 Macro domain, 22.6 1.6E+02 0.0035 22.9 4.4 29 18-50 2-30 (133)
257 PF08123 DOT1: Histone methyla 22.6 1.3E+02 0.0028 25.8 4.1 60 7-70 91-155 (205)
258 smart00737 ML Domain involved 22.2 2.5E+02 0.0053 21.2 5.3 39 229-268 71-109 (118)
259 PF05711 TylF: Macrocin-O-meth 22.1 35 0.00075 30.3 0.4 62 7-74 147-213 (248)
260 PF00963 Cohesin: Cohesin doma 21.9 1.9E+02 0.0042 22.6 4.8 31 230-260 8-38 (141)
261 PF14469 AKAP28: 28 kDa A-kina 21.8 2.7E+02 0.0058 22.0 5.3 31 236-266 65-95 (122)
262 PF05430 Methyltransf_30: S-ad 21.7 91 0.002 24.5 2.7 55 17-71 32-88 (124)
263 PF01269 Fibrillarin: Fibrilla 20.6 1.5E+02 0.0033 26.0 4.1 34 32-70 142-175 (229)
264 PRK12459 S-adenosylmethionine 20.5 89 0.0019 29.6 2.8 65 1-69 281-345 (386)
265 cd05567 PTS_IIB_mannitol PTS_I 20.5 1.8E+02 0.0039 20.8 4.0 35 2-40 18-52 (87)
266 KOG2635 Medium subunit of clat 20.5 4.7E+02 0.01 25.4 7.5 58 203-262 326-400 (512)
No 1
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-59 Score=417.76 Aligned_cols=238 Identities=38% Similarity=0.708 Sum_probs=223.9
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccceEEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVA 79 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a~ly~~ 79 (280)
||+.|+++++.|+++++|++++|+++++.|| +|||+|||||||++|++|+||+++++||++||+|||.++|++|++|++
T Consensus 94 ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~ 173 (346)
T KOG1499|consen 94 IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLA 173 (346)
T ss_pred HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEE
Confidence 6899999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCchhhhhcccccchhhhhcccccccCccccccCchhhhhhhhhhccccceEecCCCcccCcceeEEEEeCCCC
Q 023569 80 PIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTA 159 (280)
Q Consensus 80 ~v~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~G~d~s~l~~~~~~~~~~~~~~~p~~~~~~~~~~Ls~p~~i~~~D~~~~ 159 (280)
++++.. .+.++++||. ++||||||++.+. +..+|+++.+++.+++++|+.+.++|+.+.
T Consensus 174 ~i~d~~------~~~~~i~fW~-------~Vygfdms~~~~~--------~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~ 232 (346)
T KOG1499|consen 174 AIEDDS------YKDDKIGFWD-------DVYGFDMSCIKKI--------AIKEPLVDVVDPEQLLTEPCLIKEFDLYTV 232 (346)
T ss_pred eccCch------hhhhhcCccc-------cccccchhhhhhh--------hhcccceeccChhHhcccceeeEEeeeeee
Confidence 999973 5567789996 9999999999543 456889999999999999999999999999
Q ss_pred CcccccceeeeEEEEEEecCceEEEEEEEecceeccccCCCCCCcEEEecCCCCCCCCCeeeeEEeeCCeeecCCCCEEE
Q 023569 160 TVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLN 239 (280)
Q Consensus 160 ~~~dl~~~~~~~~~~~~~~~g~~~g~~~wfd~~l~~~~~~~~~~~v~lST~P~~~~~thW~Q~v~~l~~p~~V~~Gd~i~ 239 (280)
+.+|+ .++++|++.++ ++|.+|||++|||++|...+.+ ..+.+||+| .++.|||||+||++++|+.|+.|+.|.
T Consensus 233 ~i~d~-~F~s~f~l~v~-r~~~i~g~v~yFDv~F~~~~~~---~~~~fST~P-~~p~THWKQtVfyl~~p~~v~~ge~i~ 306 (346)
T KOG1499|consen 233 KIEDL-SFTSPFKLKVT-RNGYLHAFVAYFDVEFTGCHGK---KRLGFSTSP-SSPYTHWKQTVFYLENPLTVKEGEDIT 306 (346)
T ss_pred eccce-eeccceEEEEc-cCceEEEEEEEEEEeeccCCCC---CcceeecCC-CCCCceeeeEEEEecCccceecCceEE
Confidence 99999 69999999999 9999999999999999876322 578999999 599999999999999999999999999
Q ss_pred EEEEEEeCCCCCeEEEEEEEEEEecc
Q 023569 240 VSFSMTRSKENHRLLEVEFSCEIRES 265 (280)
Q Consensus 240 ~~~~~~~~~~~~r~~~i~~~~~~~~~ 265 (280)
|+++++++.+|+|++++.+++.++++
T Consensus 307 g~it~~~~~~~~R~l~~~l~~~~~~~ 332 (346)
T KOG1499|consen 307 GTITMKPNKKNNRDLDISLSLNFKGQ 332 (346)
T ss_pred EEEEEeeCCCCCccceEEEEEecCCc
Confidence 99999999999999999999999998
No 2
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=100.00 E-value=4.7e-47 Score=336.86 Aligned_cols=241 Identities=33% Similarity=0.557 Sum_probs=212.2
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccceEEEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAP 80 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a~ly~~~ 80 (280)
||++||++++.|++.+||+||.|+++|++||+|+||||||+||++|.+|.||++.++|| |||||.|.|+|.-+.++++|
T Consensus 211 MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAP 289 (517)
T KOG1500|consen 211 MAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAP 289 (517)
T ss_pred HHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecc
Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred eecCCCCchhhhhcccccchhhhhcccccccCccccccCchhhhhhhhhhccccceEecCCCcccCcceeEEEEeCCCCC
Q 023569 81 IRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTAT 160 (280)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~G~d~s~l~~~~~~~~~~~~~~~p~~~~~~~~~~Ls~p~~i~~~D~~~~~ 160 (280)
.+++. ++.+..++.+||.. .++||.|++++..... ++ ++++|.++.+++..++..+ ....+||...+
T Consensus 290 FsDE~---Ly~E~~nkAnFWyQ-----q~fyGVdLt~L~g~a~---~e-YFrQPvVDtFD~RilmA~s-v~h~~dF~~~k 356 (517)
T KOG1500|consen 290 FSDEQ---LYVEQFNKANFWYQ-----QNFYGVDLTPLYGSAH---QE-YFRQPVVDTFDIRILMAKS-VFHVIDFLNMK 356 (517)
T ss_pred cchHH---HHHHHHhhhhhhhh-----hccccccchhhhhhhh---hh-hhccccccccccceeeccc-hHhhhhhhhcc
Confidence 99873 45555678899974 6899999999976544 33 4689999999877666655 46789999999
Q ss_pred cccccceeeeEEEEEEecCceEEEEEEEecceeccccCCCCCCcEEEecCCCCCCCCCeeeeEEeeCCeeecCCCCEEEE
Q 023569 161 VDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGDDLNV 240 (280)
Q Consensus 161 ~~dl~~~~~~~~~~~~~~~g~~~g~~~wfd~~l~~~~~~~~~~~v~lST~P~~~~~thW~Q~v~~l~~p~~V~~Gd~i~~ 240 (280)
.+|+..+..++++.+. ..|.+||+++|||+.|+++ .-.+.+||+| .+|.|||.|....|..|+.|++|++|+|
T Consensus 357 Eedlh~i~iPlkF~~~-~~g~iHGLAfWFDV~F~GS-----~~~~wlsTap-~apltHwyqvrCll~~Pi~v~aGq~ltG 429 (517)
T KOG1500|consen 357 EEDLHEIDIPLKFHAL-QCGRIHGLAFWFDVLFDGS-----TVQVWLSTAP-TAPLTHWYQVRCLLSQPIFVKAGQTLTG 429 (517)
T ss_pred cchheeecccceehhh-hhcceeeeeeEEEEEeccc-----eEEEccCCCC-CCCcccceeeeeeccCchhhhcCCeeee
Confidence 9999888889999988 9999999999999999985 4457899999 6999999999999999999999999999
Q ss_pred EEEEEeCCCCCeEEEEEEEEEE
Q 023569 241 SFSMTRSKENHRLLEVEFSCEI 262 (280)
Q Consensus 241 ~~~~~~~~~~~r~~~i~~~~~~ 262 (280)
++.+-.++.++-++++.++.+.
T Consensus 430 r~~LiA~~~QSY~i~i~l~~~~ 451 (517)
T KOG1500|consen 430 RLLLIANSRQSYDITITLSAKM 451 (517)
T ss_pred eEEEEEccccceeEEEEEEeee
Confidence 9999998876544444444443
No 3
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=100.00 E-value=5.9e-42 Score=325.10 Aligned_cols=209 Identities=31% Similarity=0.508 Sum_probs=164.8
Q ss_pred HHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccceEEEEEeecCC
Q 023569 6 RTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGL 85 (280)
Q Consensus 6 ~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a~ly~~~v~~~~ 85 (280)
++.+++||++++|+|++++++++++|+|||||||||||+++.+|.+ +.+++||+|||||||++||+++++|++||+++.
T Consensus 231 ~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~-pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~ 309 (448)
T PF05185_consen 231 QKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELS-PECLDAADRFLKPDGIMIPSSYTSYLAPISSPK 309 (448)
T ss_dssp HHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSH-HHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HH
T ss_pred HHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccC-HHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHH
Confidence 5666999999999999999999999999999999999999999944 557899999999999999999999999999973
Q ss_pred CCchhhhhcccccchhhhhcccccccCccccccCchhhhhhhhhhccccceEecCCCcccCcc-eeEEEEeCCCCCc---
Q 023569 86 GDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTA-AVVKNIDCSTATV--- 161 (280)
Q Consensus 86 ~~~~~~~~~~~~~~W~~~~~~~~~~~G~d~s~l~~~~~~~~~~~~~~~p~~~~~~~~~~Ls~p-~~i~~~D~~~~~~--- 161 (280)
+ +.+...+| + ...+.+|++..+.+...|+++ +.+++|++.+...
T Consensus 310 l------~~~~~~~~--------~------------------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~ 357 (448)
T PF05185_consen 310 L------YQEVRNWW--------N------------------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPEN 357 (448)
T ss_dssp H------HHHHHHHH--------G------------------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGG
T ss_pred H------HHHHHhhc--------c------------------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccch
Confidence 2 22111111 1 113457888888888999999 9999999998762
Q ss_pred ccccceeeeEEEEEEecCceEEEEEEEecceeccccCCCCCCcEEEecCCCCC----CCCCeeeeEEeeCCeeecCCCCE
Q 023569 162 DDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTY----NGTHWGQQVFLFRPSVRVSEGDD 237 (280)
Q Consensus 162 ~dl~~~~~~~~~~~~~~~g~~~g~~~wfd~~l~~~~~~~~~~~v~lST~P~~~----~~thW~Q~v~~l~~p~~V~~Gd~ 237 (280)
.+. .....+++.+. ++|.+|||++||++.|++ +|.|||+|. . +.+||+|++|||++|+.|++||+
T Consensus 358 ~~~-~r~~~~~F~i~-~~g~vhGfagwFd~~Ly~--------~V~LSt~P~-~~~s~~~tsW~q~~fpL~~Pl~V~~g~~ 426 (448)
T PF05185_consen 358 SDN-SRSSELEFKIK-RDGVVHGFAGWFDAVLYG--------DVVLSTSPS-SAHSPPMTSWFQIFFPLEEPLYVKAGDE 426 (448)
T ss_dssp GGS-EEEEEEEEEBS-SSEEEEEEEEEEEEEEEC--------SEEEESSTT-S---TT--TTEEEEEEEEEEEEE-TT-E
T ss_pred hhh-heeeeEEEeeC-CCcEEEEEEEEEEEEeeC--------CeeeecCCC-cCCCCCCCeEeEEEEEecCcEEECCCCE
Confidence 343 56778999998 999999999999999987 599999994 5 57999999999999999999999
Q ss_pred EEEEEEEEeCCCCCeEEEEEEEEEEe
Q 023569 238 LNVSFSMTRSKENHRLLEVEFSCEIR 263 (280)
Q Consensus 238 i~~~~~~~~~~~~~r~~~i~~~~~~~ 263 (280)
|++++ +|+.++.| |+++|.++
T Consensus 427 I~~~i--~R~~~~~~---vWYEW~v~ 447 (448)
T PF05185_consen 427 ISVHI--WRKTDDRK---VWYEWSVE 447 (448)
T ss_dssp EEEEE--EEECCSTC---EEEEEEEE
T ss_pred EEEEE--EEEcCCCc---EEEEEEEe
Confidence 98765 77777666 88888775
No 4
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.4e-28 Score=229.73 Aligned_cols=219 Identities=23% Similarity=0.362 Sum_probs=173.5
Q ss_pred cCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccceEEEEEeecCCCCchh
Q 023569 12 NNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSGLGDQKQ 90 (280)
Q Consensus 12 Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a~ly~~~v~~~~~~~~~ 90 (280)
-.++++||+|.+|+++..-| +++|++|||++|+++.+|---+ +++-..++|||+|+.||++++.|++|+.++.++|
T Consensus 417 ~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPE-CLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l~q-- 493 (649)
T KOG0822|consen 417 ECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPE-CLDGAQKFLKPDGISIPSSYTSYIAPIMSPKLYQ-- 493 (649)
T ss_pred hhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHH-HHHHHHhhcCCCceEccchhhhhhcccccHHHHH--
Confidence 35789999999999999988 9999999999999999994333 3334579999999999999999999999984322
Q ss_pred hhhcccccchhhhhcccccccCccccccCchhhhhhhhhhccccceEecCCCcccCcceeEEEEeCCCCCc--cccccee
Q 023569 91 QDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVVKNIDCSTATV--DDIREVR 168 (280)
Q Consensus 91 ~~~~~~~~~W~~~~~~~~~~~G~d~s~l~~~~~~~~~~~~~~~p~~~~~~~~~~Ls~p~~i~~~D~~~~~~--~dl~~~~ 168 (280)
+. ...+.+ .++..+++..+.+...|++|+.+++|....... +. ...
T Consensus 494 -----------~v------------~a~~~~-------~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N--~R~ 541 (649)
T KOG0822|consen 494 -----------EV------------KATNDP-------NAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDN--SRS 541 (649)
T ss_pred -----------HH------------HhcCCc-------cccccceEEEecceeecCCCCceeEEecCCccccccc--ccc
Confidence 11 011100 134578899999999999999999999887532 22 223
Q ss_pred eeEEEEEEecCceEEEEEEEecceeccccCCCCCCcEEEecCCCCCC--CCCeeeeEEeeCCeeecCCCCEEEEEEEEEe
Q 023569 169 SKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYN--GTHWGQQVFLFRPSVRVSEGDDLNVSFSMTR 246 (280)
Q Consensus 169 ~~~~~~~~~~~g~~~g~~~wfd~~l~~~~~~~~~~~v~lST~P~~~~--~thW~Q~v~~l~~p~~V~~Gd~i~~~~~~~~ 246 (280)
...+|++. ++|.+|||++|||+.|+. +|.||+.|..++ +.+|.+++||+++|+.|..|++|++++ +|
T Consensus 542 ~s~eF~~~-~~~~lHGFaGYFd~~LYk--------dI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~--wR 610 (649)
T KOG0822|consen 542 KSVEFKVK-SNGVLHGFAGYFDAVLYK--------DIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHF--WR 610 (649)
T ss_pred eeEEEecC-CCceEeecchhhhhhhhh--------eeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEE--EE
Confidence 44556667 999999999999999998 699999996433 479999999999999999999999866 88
Q ss_pred CCCCCeEEEEEEEEEEec-------cccccCCccccceee
Q 023569 247 SKENHRLLEVEFSCEIRE-------STGQILPPIKNKFYI 279 (280)
Q Consensus 247 ~~~~~r~~~i~~~~~~~~-------~~~~~~~~~~~~~~~ 279 (280)
+.++.+ |+++|.++. ...++-+.-|..|.+
T Consensus 611 ~~d~~k---VWYEW~v~~~~~l~~~~~s~iHN~~Grsy~~ 647 (649)
T KOG0822|consen 611 CVDSTK---VWYEWSVESFIYLMKPSSSEIHNPNGRSYSM 647 (649)
T ss_pred EeCCce---eEEEEEeeeeecccCCCcccccCCCCceeec
Confidence 887655 888888873 335667888888865
No 5
>PTZ00357 methyltransferase; Provisional
Probab=99.89 E-value=2.4e-22 Score=192.68 Aligned_cols=223 Identities=20% Similarity=0.243 Sum_probs=149.1
Q ss_pred CCeEEEEecccccccCC------------CcccEEEecCCCcccCCCccHHHHHHHHhcccCC----Ce-------EEEc
Q 023569 15 QDVVEVIEGSVEDIVLP------------EKVDVIISEWMGYFLLRESMFDSVICARDRWLKP----TG-------VMYP 71 (280)
Q Consensus 15 ~~~i~vi~~~~~~~~l~------------~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~----~g-------~~iP 71 (280)
+++|+||++|++++..| +|+||||||++|+|+.+|---+ +++...++||+ +| +.||
T Consensus 762 G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGDNELSPE-CLDGaQrfLKdiqhsdGIl~~ph~ISIP 840 (1072)
T PTZ00357 762 GHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGDNELSPE-CLEAFHAQLEDIQLSRGIAFNPHLMCIP 840 (1072)
T ss_pred CCeEEEEeCcccccccccccccccccccccccceehHhhhcccccccCCHH-HHHHHHHhhhhhccccccccCCcceecc
Confidence 56799999999999654 3899999999999999994333 23344677765 44 6999
Q ss_pred ccceEEEEEeecCCCCchhhhhcccccchhhhhcccccccCccccccCchhhhhhhhhhccccceEecCCCcccCcceeE
Q 023569 72 SHARMWVAPIRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEEQKKYYLQTSLWSNLHPDQVIGTAAVV 151 (280)
Q Consensus 72 ~~a~ly~~~v~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~G~d~s~l~~~~~~~~~~~~~~~p~~~~~~~~~~Ls~p~~i 151 (280)
++++.|++||.++.+++. +.. ....|+-.+...-. ......+..+++..+.....|++|+++
T Consensus 841 qSYTSYIAPISSpKLya~-------------V~~--~~~~gltvP~p~c~---~~haa~fet~YVV~L~s~~~La~PQPc 902 (1072)
T PTZ00357 841 QQYTAWVAPLMSATFDAA-------------VTE--AAVKGLTVPPPGCH---DHHAALNHTLLVTNLSRAVTLAPPQPC 902 (1072)
T ss_pred hhhhhhccccccHHHHHH-------------HHH--hhhcccccCCcccc---ccchhhcccceEEEecceeecCCCcce
Confidence 999999999999853321 000 01112211100000 000012346788888888889999999
Q ss_pred EEEeCCCCCcc-----------------cccceeeeEEEEEEecCceEEEEEEEecceeccccCCCCCCcEEEecCCCCC
Q 023569 152 KNIDCSTATVD-----------------DIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTY 214 (280)
Q Consensus 152 ~~~D~~~~~~~-----------------dl~~~~~~~~~~~~~~~g~~~g~~~wfd~~l~~~~~~~~~~~v~lST~P~~~ 214 (280)
++|.+.+.... +. .....+.|++. .+|++|||++||++.|++... ...+.|||.|...
T Consensus 903 FTFeHPn~~~s~n~y~~~~g~~~~~~~i~N-~Rya~L~F~v~-~d~vlHGFAGYFdAvLYkDVt---~~~V~LSI~P~Th 977 (1072)
T PTZ00357 903 WTFEHRFHGGSDNDYKGDRGAMKRREPVSL-ERAASLLFEVP-PCGRCCGLAGYFSAVLYQSAT---APATIIATAPVER 977 (1072)
T ss_pred eEEECCCccccccccccccccccccccccc-ceeEEEEEecC-CCcceeeeeeEEEEEeecCCC---ccceEeecCCCCC
Confidence 99999764421 11 23456777777 999999999999999997200 0127899999522
Q ss_pred C--CCCeeeeEEeeC---CeeecCCCC---------EEEEEEEEEeCCCCCeEEEEEEEEEEec
Q 023569 215 N--GTHWGQQVFLFR---PSVRVSEGD---------DLNVSFSMTRSKENHRLLEVEFSCEIRE 264 (280)
Q Consensus 215 ~--~thW~Q~v~~l~---~p~~V~~Gd---------~i~~~~~~~~~~~~~r~~~i~~~~~~~~ 264 (280)
+ +-+|++.+|||+ .+..++.|+ .|++.++...+.+..| |+++|.+.-
T Consensus 978 TpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~i~~~l~Rr~~~~e~r---VwYew~v~~ 1038 (1072)
T PTZ00357 978 TEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRVQLDRRTSLAEQR---VWYEWSVTY 1038 (1072)
T ss_pred CCCccceeeeEEecCccccceEeeccccccccccceeEEEeeeeccccccce---EEEEEEEee
Confidence 2 359999999998 556666776 5665554444446666 667776643
No 6
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=99.83 E-value=9.8e-21 Score=173.98 Aligned_cols=200 Identities=18% Similarity=0.176 Sum_probs=146.2
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC--CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccceEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWV 78 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~--~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a~ly~ 78 (280)
|++.||+++..||++++|+||+++++++... .++|++|.|.+++.|++||.|+++.+|.++++++|++.+|++|++|+
T Consensus 101 M~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~ 180 (636)
T KOG1501|consen 101 MVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYC 180 (636)
T ss_pred HHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEE
Confidence 7899999999999999999999999999865 68999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCchhhhhcccccchhhh-hcccccccCccccccC------chhhhhhhhhhccccceEec-CCCcccCccee
Q 023569 79 APIRSGLGDQKQQDYEGALDDWYSF-LKETKTYYGVDMSVLT------KPFSEEQKKYYLQTSLWSNL-HPDQVIGTAAV 150 (280)
Q Consensus 79 ~~v~~~~~~~~~~~~~~~~~~W~~~-~~~~~~~~G~d~s~l~------~~~~~~~~~~~~~~p~~~~~-~~~~~Ls~p~~ 150 (280)
++||+..++ -|+.+ ..+.+...|..+.+-. .+.. .. ..+.+.. +..++||++-.
T Consensus 181 qlVES~~l~-----------~~ndl~~~~~~ts~gv~~~p~~lesc~G~~sv---~d----~ql~~~~~~ef~~Ls~~~~ 242 (636)
T KOG1501|consen 181 QLVESTFLC-----------NLNDLRNNEAKTSDGVRLVPPGLESCFGIKSV---QD----SQLVDAIEKEFKLLSSEGT 242 (636)
T ss_pred EEehhhhhh-----------hhhccccccccccCCcccCCCccccCCCchhH---HH----HHHhhcchhhheeecCcce
Confidence 999997432 12222 1122333343332211 0000 00 0111111 24689999999
Q ss_pred EEEEeCCCCC--cccccceeeeEEEEEEecCceEEEEEEEecceeccccCCCCCCcEEEecCCCCCC--------CCCee
Q 023569 151 VKNIDCSTAT--VDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTYN--------GTHWG 220 (280)
Q Consensus 151 i~~~D~~~~~--~~dl~~~~~~~~~~~~~~~g~~~g~~~wfd~~l~~~~~~~~~~~v~lST~P~~~~--------~thW~ 220 (280)
+|.+||..-. ..+. ++ .+...+. .+|++....+|||..|+.. +...+..+|-+.. ..||.
T Consensus 243 ~F~~df~~~~~s~s~~-~~--~r~~va~-~Sg~~~~~l~wwdi~mD~~------g~~f~~m~p~w~~~~~~~~~~~~~we 312 (636)
T KOG1501|consen 243 IFYSDFPRWIDSNSEI-EE--LRPPVAV-HSGPLRSNLLWWDISMDQF------GFSFLVMQPLWTGVTIGNSVFGLLWE 312 (636)
T ss_pred eEEeecchhhhcchhh-hh--hcCcccc-cccchhheeeeeeeeeccC------cceEEEecceecCCChHHHHHHHHHH
Confidence 9999998422 1222 11 2233345 7999999999999999873 4567788884332 25999
Q ss_pred eeEEeeCC
Q 023569 221 QQVFLFRP 228 (280)
Q Consensus 221 Q~v~~l~~ 228 (280)
|++++.++
T Consensus 313 q~c~y~~~ 320 (636)
T KOG1501|consen 313 QACPYPKE 320 (636)
T ss_pred HhcCCChh
Confidence 99999873
No 7
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=99.55 E-value=1.5e-14 Score=133.59 Aligned_cols=211 Identities=15% Similarity=0.138 Sum_probs=155.4
Q ss_pred HHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCC--CcccCCCccH-HHHHHHHhcccCCCeEEEcccceEEEEE
Q 023569 4 HARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM--GYFLLRESMF-DSVICARDRWLKPTGVMYPSHARMWVAP 80 (280)
Q Consensus 4 ~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~--g~~l~~E~~l-~~~~~a~~~~L~~~g~~iP~~a~ly~~~ 80 (280)
.-|.++.+|-+..+++.+...-.-+..|...|+++.|++ -+++.+.+.. -....+.+..+.|+.++.|+.+.+.+.|
T Consensus 400 ~~r~if~~~~~~~Klsn~e~vp~i~t~~ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G~~~~V~P~~~~L~Ai~ 479 (636)
T KOG1501|consen 400 RERVIFNQRLIQLKLSNNESVPAIMTSPDSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHGDELRVEPHMGVLKAIP 479 (636)
T ss_pred HHHHHHHHHHHHHhhcccccchhhhcCCCCCceeecchhhhhccCchhheeeeeeHHHHHHhcCCceeeccccchhhhhh
Confidence 346677777777777777655555567777899999996 4556666542 3345566788999999999999999999
Q ss_pred eecCCCCchhhhhcccccchhhhhcccccccCccccccCchhhhh--hh-hhhccccceEecCCCcccCcceeEEEEeCC
Q 023569 81 IRSGLGDQKQQDYEGALDDWYSFLKETKTYYGVDMSVLTKPFSEE--QK-KYYLQTSLWSNLHPDQVIGTAAVVKNIDCS 157 (280)
Q Consensus 81 v~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~G~d~s~l~~~~~~~--~~-~~~~~~p~~~~~~~~~~Ls~p~~i~~~D~~ 157 (280)
++.+ ++|+ |++++..+.|||++-|+++.... .. .....+++|++ +...+++|+++.+|+|.
T Consensus 480 ~kF~-------------DL~~-I~S~~G~~~GFDl~~~Dei~~kA~~~~da~~~E~~LWEY--~~~~~~d~~eIL~F~~~ 543 (636)
T KOG1501|consen 480 EKFE-------------DLQN-IASDVGTVNGFDLSFFDEISTKARTATDAIVDEQSLWEY--AGIVKGDAVEILRFPID 543 (636)
T ss_pred HHHH-------------HHHh-hcccccccccceeeehhHHHHhhchhhhhhhccchhhhc--cCeecCCceeEEEeccC
Confidence 9775 5675 78889999999999987764321 01 11234889999 89999999999999999
Q ss_pred CCCcccccceeeeEEEEEEecCceEEEEEEEecceeccccCCCCCCcEEEecCCCCC--------CCCCeeeeEEeeCCe
Q 023569 158 TATVDDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGSTEDPAQQEIELTTAPSTY--------NGTHWGQQVFLFRPS 229 (280)
Q Consensus 158 ~~~~~dl~~~~~~~~~~~~~~~g~~~g~~~wfd~~l~~~~~~~~~~~v~lST~P~~~--------~~thW~Q~v~~l~~p 229 (280)
..-..+ +-.+.+. +.|.-||+.+|++++|++ +.||||- .+ .-.|.||+||++..
T Consensus 544 ~~V~~Q------k~~V~i~-~~~sS~A~~mWME~~~~~---------~nLSTGL-L~~~~~G~~~WN~~~KQ~VYF~~t- 605 (636)
T KOG1501|consen 544 GRVSSQ------KCVVNID-NMSSSNAIPMWMEWEFGG---------INLSTGL-LSISSAGVPEWNKGYKQGVYFPIT- 605 (636)
T ss_pred Cccccc------eeEEEcc-CCCccccceeeEEeeeCc---------eeecccc-eeecCCCCcccCccccceeEEEhH-
Confidence 743322 3445667 999999999999999974 7888874 22 13588999998732
Q ss_pred eecCCCCEEEEEEEEEeCCC
Q 023569 230 VRVSEGDDLNVSFSMTRSKE 249 (280)
Q Consensus 230 ~~V~~Gd~i~~~~~~~~~~~ 249 (280)
.++...++.+.+.+++...
T Consensus 606 -~L~~~ksl~~~~~F~~~TG 624 (636)
T KOG1501|consen 606 -ALRNDKSLCLHALFDKSTG 624 (636)
T ss_pred -HhCCCceEEEEEEEcCCCC
Confidence 3444557888887777654
No 8
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.58 E-value=1.7e-08 Score=84.42 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccceEEEEEe
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPI 81 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a~ly~~~v 81 (280)
|++|+++++-||+.+ ++|+.+|..+.++ +++|+|+||++++.|+.|...+.+..+ -.||+.++.+||+.+..-+.||
T Consensus 67 a~~a~eN~~v~g~~n-~evv~gDA~~y~f-e~ADvvicEmlDTaLi~E~qVpV~n~v-leFLr~d~tiiPq~v~~~a~pv 143 (252)
T COG4076 67 ARLAEENLHVPGDVN-WEVVVGDARDYDF-ENADVVICEMLDTALIEEKQVPVINAV-LEFLRYDPTIIPQEVRIGANPV 143 (252)
T ss_pred HHHhhhcCCCCCCcc-eEEEecccccccc-cccceeHHHHhhHHhhcccccHHHHHH-HHHhhcCCccccHHHhhccCcc
Confidence 688999999999977 9999999999999 899999999999999999988855444 4599999999999999999999
Q ss_pred ecCC
Q 023569 82 RSGL 85 (280)
Q Consensus 82 ~~~~ 85 (280)
+-+.
T Consensus 144 ~~~~ 147 (252)
T COG4076 144 RRPP 147 (252)
T ss_pred ccCC
Confidence 8763
No 9
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.01 E-value=9e-06 Score=71.76 Aligned_cols=69 Identities=25% Similarity=0.366 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC---CcccEEEecCCCccc---CC------------CccHHHHHHHHhcc
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDVIISEWMGYFL---LR------------ESMFDSVICARDRW 62 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~---~~~DvivsE~~g~~l---~~------------E~~l~~~~~a~~~~ 62 (280)
|+++|+++++.|+++++|+|+++|+.++.-+ .++|+|||+|.-+-. .. +..++.++.+..++
T Consensus 80 ~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~ 159 (248)
T COG4123 80 AAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKL 159 (248)
T ss_pred HHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHH
Confidence 6899999999999999999999999998633 579999999973221 11 14577888888899
Q ss_pred cCCCeEE
Q 023569 63 LKPTGVM 69 (280)
Q Consensus 63 L~~~g~~ 69 (280)
|||||.+
T Consensus 160 lk~~G~l 166 (248)
T COG4123 160 LKPGGRL 166 (248)
T ss_pred ccCCCEE
Confidence 9999965
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.76 E-value=4.1e-05 Score=58.65 Aligned_cols=70 Identities=27% Similarity=0.293 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHcCCCCeEEEEeccc-ccccCCCcccEEEecC-CCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSV-EDIVLPEKVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~-~~~~l~~~~DvivsE~-~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|++.+..++..++|++++++. .+...++++|+|++.. ....++.......++....+.|+|||+++
T Consensus 37 ~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lv 108 (112)
T PF12847_consen 37 MLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLV 108 (112)
T ss_dssp HHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEE
Confidence 5688999998899999999999999 5556678999999987 22223333333344555568899999876
No 11
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.51 E-value=0.00016 Score=60.39 Aligned_cols=68 Identities=24% Similarity=0.317 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCC--ccHHHHHHHHhcccCCCeEEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRE--SMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E--~~l~~~~~a~~~~L~~~g~~i 70 (280)
.+.|+++++.|++++ |+++.++..+-..+.++|+|||++.-.....+ ..+..++....++|||||.++
T Consensus 68 ~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 68 LELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp HHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 578999999999999 99999887664345899999999973222222 245666666678999999764
No 12
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.43 E-value=0.00041 Score=59.03 Aligned_cols=62 Identities=24% Similarity=0.317 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|++.++.|++++ |+++++++.++...+++|+|++..+ ..++.+..+..++|||||.++
T Consensus 81 ~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~~~~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv 142 (187)
T PRK00107 81 KIAFLREVAAELGLKN-VTVVHGRAEEFGQEEKFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFL 142 (187)
T ss_pred HHHHHHHHHHHcCCCC-EEEEeccHhhCCCCCCccEEEEccc-------cCHHHHHHHHHHhcCCCeEEE
Confidence 5688999999999987 9999999999766679999999643 235666667779999999977
No 13
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.39 E-value=0.00043 Score=58.55 Aligned_cols=62 Identities=24% Similarity=0.317 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|+++|++.++.+|+++ |++++++++++...+++|+|+|..+. .++.+.....++|+|||.++
T Consensus 78 ~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~~~~fD~I~s~~~~-------~~~~~~~~~~~~LkpgG~lv 139 (181)
T TIGR00138 78 KVAFLREVKAELGLNN-VEIVNGRAEDFQHEEQFDVITSRALA-------SLNVLLELTLNLLKVGGYFL 139 (181)
T ss_pred HHHHHHHHHHHhCCCC-eEEEecchhhccccCCccEEEehhhh-------CHHHHHHHHHHhcCCCCEEE
Confidence 4678899999999976 99999999997555799999997521 23344445568999999988
No 14
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.10 E-value=0.00056 Score=52.71 Aligned_cols=69 Identities=33% Similarity=0.416 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc--CC-CcccEEEecCCCccc-CCC----ccHHHHHHHHhcccCCCeEEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEWMGYFL-LRE----SMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l~-~~~DvivsE~~g~~l-~~E----~~l~~~~~a~~~~L~~~g~~i 70 (280)
+++|++++..+++.++++++.++..++. ++ .++|+|++++.-... -.. .....++....++|||||.++
T Consensus 36 ~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~ 112 (117)
T PF13659_consen 36 VELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLV 112 (117)
T ss_dssp HHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEE
Confidence 5789999999999999999999999986 54 899999999964221 111 233455666678999999653
No 15
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=97.03 E-value=0.0012 Score=53.77 Aligned_cols=71 Identities=32% Similarity=0.387 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHcCCCCeEEEEeccccccc--CCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccce
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 75 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a~ 75 (280)
|++.|++.++.+++. +++++++++++++ +++++|+|++...- .+..-...++....++|+++|+++-....
T Consensus 40 ~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~~l---~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 40 MIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNGVL---HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp HHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEESTG---GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcCch---hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 578899999999999 6999999999987 66899999997421 22233344555556899999988754443
No 16
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=96.86 E-value=0.0024 Score=54.50 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
|++.|++.++.+++.+ |+++..+..++.+++++|+|++..+-++ +....+..++....++|||||.+
T Consensus 64 ~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~I~~~~~~~~-~~~~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 64 SIANLERIKAAENLDN-LHTAVVDLNNLTFDGEYDFILSTVVLMF-LEAKTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred HHHHHHHHHHHcCCCc-ceEEecChhhCCcCCCcCEEEEecchhh-CCHHHHHHHHHHHHHHcCCCcEE
Confidence 4678899999999865 8888888888877788999999754322 23344566666667899999975
No 17
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=96.84 E-value=0.0022 Score=55.48 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|++.++.+|++++|+++.++..+..+++++|+|++--+-... .. .+.++....++|||||.++
T Consensus 35 ~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~--~~-~~~~l~~~~~~LkpgG~l~ 101 (224)
T smart00828 35 QAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI--KD-KMDLFSNISRHLKDGGHLV 101 (224)
T ss_pred HHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC--CC-HHHHHHHHHHHcCCCCEEE
Confidence 3577888899999999999999998776667899999984322111 11 3455556678999999887
No 18
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=96.80 E-value=0.0017 Score=57.10 Aligned_cols=65 Identities=28% Similarity=0.405 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
|.+.|++-++..+.. +|+++.++.+++++| +.+|+|++= .++-+=.-.+..+....|.|||||++
T Consensus 84 ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~---fglrn~~d~~~~l~E~~RVLkPGG~l 149 (233)
T PF01209_consen 84 MLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCS---FGLRNFPDRERALREMYRVLKPGGRL 149 (233)
T ss_dssp HHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEE---S-GGG-SSHHHHHHHHHHHEEEEEEE
T ss_pred HHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHH---hhHHhhCCHHHHHHHHHHHcCCCeEE
Confidence 678899999988887 599999999999998 899999973 22222122444555566999999987
No 19
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.73 E-value=0.0033 Score=57.61 Aligned_cols=69 Identities=22% Similarity=0.299 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcc----------cCCC------------ccHHHHHH
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYF----------LLRE------------SMFDSVIC 57 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~----------l~~E------------~~l~~~~~ 57 (280)
+++.|+++++.||+.++|++++++..+ .+| .++|+|||++.-.. ..+| .....++.
T Consensus 169 al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~ 247 (307)
T PRK11805 169 ALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILA 247 (307)
T ss_pred HHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHH
Confidence 367899999999999899999999765 244 58999999874110 0111 12344555
Q ss_pred HHhcccCCCeEEE
Q 023569 58 ARDRWLKPTGVMY 70 (280)
Q Consensus 58 a~~~~L~~~g~~i 70 (280)
...++|+|||.++
T Consensus 248 ~a~~~L~pgG~l~ 260 (307)
T PRK11805 248 EAPDYLTEDGVLV 260 (307)
T ss_pred HHHHhcCCCCEEE
Confidence 5668999999875
No 20
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.72 E-value=0.0045 Score=56.07 Aligned_cols=69 Identities=22% Similarity=0.273 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcc----------cCCC------------ccHHHHHH
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYF----------LLRE------------SMFDSVIC 57 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~----------l~~E------------~~l~~~~~ 57 (280)
+++.|+++++.||+.++|++++++..+. ++ +++|+|||++.-.- ..+| .....++.
T Consensus 157 al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~ 235 (284)
T TIGR03533 157 ALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILA 235 (284)
T ss_pred HHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHH
Confidence 3678999999999998999999997542 44 58999999874110 0111 12344555
Q ss_pred HHhcccCCCeEEE
Q 023569 58 ARDRWLKPTGVMY 70 (280)
Q Consensus 58 a~~~~L~~~g~~i 70 (280)
...++|+|||.++
T Consensus 236 ~a~~~L~~gG~l~ 248 (284)
T TIGR03533 236 EAADHLNENGVLV 248 (284)
T ss_pred HHHHhcCCCCEEE
Confidence 5568999999875
No 21
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.71 E-value=0.0046 Score=52.76 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccc--cCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~--~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|+++++.||+.++|+++.++..+. .+++++|.|++.. +-..+..++.+..+.|||||.++
T Consensus 77 ~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv 142 (198)
T PRK00377 77 AINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIV 142 (198)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEE
Confidence 4678999999999877799999998774 2447899999842 11234455556668899999887
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=96.71 E-value=0.0047 Score=57.33 Aligned_cols=67 Identities=18% Similarity=0.140 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|++.++.+|+.++|+++.++..+++++ +.+|+|++--.. ..... ...++....|.|||||.++
T Consensus 153 ~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~--~h~~d-~~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 153 QAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG--EHMPD-KRKFVQELARVAAPGGRII 220 (340)
T ss_pred HHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch--hccCC-HHHHHHHHHHHcCCCcEEE
Confidence 4678899999999998899999999998877 789999983221 11112 2334444568999999764
No 23
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=96.61 E-value=0.0053 Score=55.33 Aligned_cols=66 Identities=29% Similarity=0.398 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcc-cCCCccHHHHHHHHhcccCCCeEEEc
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF-LLRESMFDSVICARDRWLKPTGVMYP 71 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~-l~~E~~l~~~~~a~~~~L~~~g~~iP 71 (280)
++.|++-+++.|++++|+|..++.+++ +.++|-|||= |.+ -.+..-++.+.....++|||||+++=
T Consensus 98 ~~~a~~~~~~~gl~~~v~v~~~D~~~~--~~~fD~IvSi--~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~l 164 (273)
T PF02353_consen 98 AEYARERIREAGLEDRVEVRLQDYRDL--PGKFDRIVSI--EMFEHVGRKNYPAFFRKISRLLKPGGRLVL 164 (273)
T ss_dssp HHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEE--SEGGGTCGGGHHHHHHHHHHHSETTEEEEE
T ss_pred HHHHHHHHHhcCCCCceEEEEeecccc--CCCCCEEEEE--echhhcChhHHHHHHHHHHHhcCCCcEEEE
Confidence 467889999999999999999988765 4589999993 322 23344566777777899999998753
No 24
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.60 E-value=0.0055 Score=50.60 Aligned_cols=66 Identities=20% Similarity=0.106 Sum_probs=43.4
Q ss_pred CHHHHHHHHHH--cCCCCeEEEEecccccccCC-CcccEEEecCCCcccCC-CccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKA--NNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLR-ESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~--Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~-E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|.+.|++-.+. .+..++|+++.++.++++++ +.+|+|++-. .+.+ +. ...++....|.|||||.++
T Consensus 9 ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~---~l~~~~d-~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 9 QLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY---GLRNVVD-RLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred HHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc---hhhcCCC-HHHHHHHHHHHcCcCeEEE
Confidence 56777654432 23345699999999999877 6899999842 2221 23 2333444568999999774
No 25
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.60 E-value=0.0068 Score=54.19 Aligned_cols=67 Identities=28% Similarity=0.275 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEc
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 71 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP 71 (280)
|.+.|++.++.+|+. +++++.++.++++++ +.+|+|++........ . .+.++....++|||||+++=
T Consensus 114 ~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~--d-~~~~l~~~~r~LkpGG~l~i 181 (272)
T PRK11873 114 MLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVIISNCVINLSP--D-KERVFKEAFRVLKPGGRFAI 181 (272)
T ss_pred HHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEEEcCcccCCC--C-HHHHHHHHHHHcCCCcEEEE
Confidence 467899999888986 589999999998876 6899999986533221 1 22334445689999998763
No 26
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.55 E-value=0.0037 Score=55.30 Aligned_cols=68 Identities=22% Similarity=0.365 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|++.++.++..++|+++.+++.++.++ .+|+||+-..-..+..+. ...++..-.+.|||||.++
T Consensus 94 ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~vv~~~~l~~l~~~~-~~~~l~~i~~~LkpGG~l~ 161 (247)
T PRK15451 94 MIERCRRHIDAYKAPTPVDVIEGDIRDIAIE-NASMVVLNFTLQFLEPSE-RQALLDKIYQGLNPGGALV 161 (247)
T ss_pred HHHHHHHHHHhcCCCCCeEEEeCChhhCCCC-CCCEEehhhHHHhCCHHH-HHHHHHHHHHhcCCCCEEE
Confidence 6789999999999988899999999887665 589999864333332222 3344445567899999864
No 27
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.52 E-value=0.0055 Score=56.57 Aligned_cols=68 Identities=24% Similarity=0.295 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCC-Cccc--CCC---ccHHHHHHHHhcccCCCeEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM-GYFL--LRE---SMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~-g~~l--~~E---~~l~~~~~a~~~~L~~~g~~ 69 (280)
|++.|+++++.+|+.+ ++++.+|..+++++ +++|+||++++ |... -.+ .....++....+.|||||.+
T Consensus 216 ~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~l 290 (329)
T TIGR01177 216 MVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWI 290 (329)
T ss_pred HHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEE
Confidence 5678999999999988 99999999998875 78999999975 2111 111 22455555556899999964
No 28
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=96.51 E-value=0.0051 Score=52.43 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|++.++.+|+. ++....+.....++.++|+|++..+-..+ ....++.++....++|||||.++
T Consensus 64 ~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~I~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 64 SIASVLDMKARENLP--LRTDAYDINAAALNEDYDFIFSTVVFMFL-QAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred HHHHHHHHHHHhCCC--ceeEeccchhccccCCCCEEEEecccccC-CHHHHHHHHHHHHHHhCCCcEEE
Confidence 456788888888885 67777777666677889999997653222 23455666677778999999844
No 29
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=96.49 E-value=0.0019 Score=47.24 Aligned_cols=56 Identities=27% Similarity=0.308 Sum_probs=37.4
Q ss_pred cCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 12 NNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 12 Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
+.-...+.++.++.+++++| +.+|+|++.-.-..+ +.... ++....|.|||||.++
T Consensus 38 ~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~~-~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 38 RLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPEA-ALREIYRVLKPGGRLV 94 (95)
T ss_dssp HTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHHH-HHHHHHHHEEEEEEEE
T ss_pred cccccCchheeehHHhCccccccccccccccceeec--cCHHH-HHHHHHHHcCcCeEEe
Confidence 33344566999999999888 899999996533223 33333 4444568999999875
No 30
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.39 E-value=0.0088 Score=56.35 Aligned_cols=69 Identities=17% Similarity=0.105 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHcCCC--CeEEEEecccccccCCCcccEEEecCCCccc--CCCccHHHHHHHHhcccCCCeEE
Q 023569 1 MSDHARTLVKANNLQ--DVVEVIEGSVEDIVLPEKVDVIISEWMGYFL--LRESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~--~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l--~~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
|++.|+++++.|+.+ ++++++.++..+-..+.++|+|+|++.-.-. ........++....+.|+|||.+
T Consensus 264 Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L 336 (378)
T PRK15001 264 AVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGEL 336 (378)
T ss_pred HHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEE
Confidence 467899999999875 3789998876443223689999999863321 23334455555556889999964
No 31
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=96.30 E-value=0.0075 Score=53.05 Aligned_cols=72 Identities=8% Similarity=0.068 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccc--cC-----CCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccc
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDI--VL-----PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 74 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~--~l-----~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a 74 (280)
++.|+++++.+|++++|+++.++..+. .+ .+++|+|+.+.- ......+.....++|+|||.++=+-.
T Consensus 106 ~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 106 YEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 678999999999999999999999875 12 258999988642 12222334444578999999875554
Q ss_pred eEEEE
Q 023569 75 RMWVA 79 (280)
Q Consensus 75 ~ly~~ 79 (280)
-..+.
T Consensus 180 l~~G~ 184 (234)
T PLN02781 180 LWFGF 184 (234)
T ss_pred CcCCe
Confidence 44333
No 32
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.30 E-value=0.013 Score=52.90 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCc----------ccCCCc------------cHHHHHHH
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGY----------FLLRES------------MFDSVICA 58 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~----------~l~~E~------------~l~~~~~a 58 (280)
++.|+++++.|+++++|++++++..+ .++ .++|+|||++.-. ...+|. .+..++..
T Consensus 151 l~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~ 229 (284)
T TIGR00536 151 LAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIEL 229 (284)
T ss_pred HHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHH
Confidence 57899999999998889999999866 344 4899999987411 011221 23445555
Q ss_pred HhcccCCCeEEE
Q 023569 59 RDRWLKPTGVMY 70 (280)
Q Consensus 59 ~~~~L~~~g~~i 70 (280)
..++|+|||.++
T Consensus 230 a~~~L~~gG~l~ 241 (284)
T TIGR00536 230 APDYLKPNGFLV 241 (284)
T ss_pred HHHhccCCCEEE
Confidence 668999999764
No 33
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.28 E-value=0.012 Score=51.06 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|++.++.+++. +|+++.++..++.++ +++|+|++... +-+-.-...++....++|+|||.++
T Consensus 82 ~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~---l~~~~~~~~~l~~~~~~Lk~gG~l~ 148 (231)
T TIGR02752 82 MLSVGRQKVKDAGLH-NVELVHGNAMELPFDDNSFDYVTIGFG---LRNVPDYMQVLREMYRVVKPGGKVV 148 (231)
T ss_pred HHHHHHHHHHhcCCC-ceEEEEechhcCCCCCCCccEEEEecc---cccCCCHHHHHHHHHHHcCcCeEEE
Confidence 467788888888884 599999999988776 78999987531 1111223344445568999999885
No 34
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=96.22 E-value=0.011 Score=52.21 Aligned_cols=63 Identities=29% Similarity=0.433 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCe
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTG 67 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g 67 (280)
|.+.|++=...-|..+ |+++.++.+++++| ..+|++.+ ++++-+=.-.+..+....|.|||||
T Consensus 87 ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~---~fglrnv~d~~~aL~E~~RVlKpgG 150 (238)
T COG2226 87 MLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTI---SFGLRNVTDIDKALKEMYRVLKPGG 150 (238)
T ss_pred HHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEe---eehhhcCCCHHHHHHHHHHhhcCCe
Confidence 6788888888878888 99999999999999 79999886 3444443344555555679999999
No 35
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=96.13 E-value=0.019 Score=48.34 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|+++++.+++++ |+++.++.. ..+++++|+|++.... +.++.++....+.|+|||.++
T Consensus 67 ~~~~a~~n~~~~~~~~-i~~~~~d~~-~~~~~~~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~lv 128 (187)
T PRK08287 67 ALRLIKENRQRFGCGN-IDIIPGEAP-IELPGKADAIFIGGSG------GNLTAIIDWSLAHLHPGGRLV 128 (187)
T ss_pred HHHHHHHHHHHhCCCC-eEEEecCch-hhcCcCCCEEEECCCc------cCHHHHHHHHHHhcCCCeEEE
Confidence 4678899999999864 999998874 3456789999985321 234445555567899999764
No 36
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=96.07 E-value=0.013 Score=53.34 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEe-cCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS-EWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~Dvivs-E~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
+++.|++.++.+|++++|+++.++..+..+|. +|+++. ..+. . ..+.....++....+.|+|||+++
T Consensus 184 ~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-~D~v~~~~~lh-~-~~~~~~~~il~~~~~~L~pgG~l~ 251 (306)
T TIGR02716 184 AIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADAVLFCRILY-S-ANEQLSTIMCKKAFDAMRSGGRLL 251 (306)
T ss_pred HHHHHHHHHHhCCccceEEEEecCccCCCCCC-CCEEEeEhhhh-c-CChHHHHHHHHHHHHhcCCCCEEE
Confidence 36788999999999999999999988766764 698754 3221 1 122222333433457899999774
No 37
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.06 E-value=0.0096 Score=52.81 Aligned_cols=67 Identities=24% Similarity=0.320 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHcCCCCeEEEEeccccccc--CCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|++.++.+|+.++|+++++++.++. .++++|+|++-..-..+ +.. ..++....++|||||.++
T Consensus 78 ~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~--~~~-~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 78 MIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWV--ADP-KSVLQTLWSVLRPGGALS 146 (255)
T ss_pred HHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhh--CCH-HHHHHHHHHHcCCCeEEE
Confidence 56789999999999888999999999874 34789999975321111 222 233444568999999883
No 38
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.05 E-value=0.014 Score=52.91 Aligned_cols=63 Identities=24% Similarity=0.327 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|+++++.|++++++++..++... ..++++|+|+++.+. + .+..++....++|||||.++
T Consensus 194 al~~a~~n~~~n~~~~~~~~~~~~~~~-~~~~~fDlVvan~~~-----~-~l~~ll~~~~~~LkpgG~li 256 (288)
T TIGR00406 194 AVESARKNAELNQVSDRLQVKLIYLEQ-PIEGKADVIVANILA-----E-VIKELYPQFSRLVKPGGWLI 256 (288)
T ss_pred HHHHHHHHHHHcCCCcceEEEeccccc-ccCCCceEEEEecCH-----H-HHHHHHHHHHHHcCCCcEEE
Confidence 467899999999999989888776322 124789999998642 2 22334444468999999886
No 39
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.02 E-value=0.016 Score=49.74 Aligned_cols=60 Identities=25% Similarity=0.186 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
|++.|+++++.+|+.+++++++++..+...+ .++|+|++.... +.+.+ ...+.|+|||++
T Consensus 109 ~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~-----~~~~~----~l~~~L~~gG~l 169 (205)
T PRK13944 109 LAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAA-----STIPS----ALVRQLKDGGVL 169 (205)
T ss_pred HHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCc-----chhhH----HHHHhcCcCcEE
Confidence 4678999999999988899999998764322 689999986421 22223 223679999976
No 40
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.01 E-value=0.013 Score=51.37 Aligned_cols=69 Identities=19% Similarity=0.272 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEc
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 71 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP 71 (280)
|++.|++.++..+...+|++++++..++.++ .+|+|++-..-..+..+. ...++....+.|||||.++=
T Consensus 91 ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~~l~~~~~~~-~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 91 MVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNFTLQFLPPED-RIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred HHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeecchhhCCHHH-HHHHHHHHHHhcCCCeEEEE
Confidence 5678898888878777899999999988776 589888754322222222 23344445688999998764
No 41
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=95.97 E-value=0.014 Score=52.73 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
|++.|++.++.+++ .|++...++.+..+++++|+|++..+-.++ .....+.++....+.|+|||.+
T Consensus 154 ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l-~~~~~~~~l~~~~~~LkpgG~~ 219 (287)
T PRK12335 154 SLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLMFL-NRERIPAIIKNMQEHTNPGGYN 219 (287)
T ss_pred HHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhhhC-CHHHHHHHHHHHHHhcCCCcEE
Confidence 35678888999998 488888888777778899999998654433 2334555666667899999983
No 42
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.021 Score=51.79 Aligned_cols=66 Identities=29% Similarity=0.301 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCC--ccHHHHHHHHhcccCCCeEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRE--SMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E--~~l~~~~~a~~~~L~~~g~~ 69 (280)
.+.||++++.|++++. .|+..+.-+ ...+++|+|||+|.-.-...- .....++.+..++|++||.+
T Consensus 195 v~~ar~Nl~~N~~~~~-~v~~s~~~~-~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL 262 (300)
T COG2813 195 VESARKNLAANGVENT-EVWASNLYE-PVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGEL 262 (300)
T ss_pred HHHHHHhHHHcCCCcc-EEEEecccc-cccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEE
Confidence 4789999999999986 666655432 344699999999964322111 22235666667899999964
No 43
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.93 E-value=0.027 Score=43.35 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccc--cCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcc
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 72 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~--~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~ 72 (280)
|++.|++.++.+++.+ ++++.++..+. ..++++|+|++... ......++....++|||||.++-.
T Consensus 55 ~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~v~~~~~------~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 55 ALRLIERNARRFGVSN-IVIVEGDAPEALEDSLPEPDRVFIGGS------GGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred HHHHHHHHHHHhCCCc-eEEEeccccccChhhcCCCCEEEECCc------chhHHHHHHHHHHHcCCCCEEEEE
Confidence 4678899999998875 89998887653 24479999998531 123345666667899999988754
No 44
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=95.90 E-value=0.029 Score=46.91 Aligned_cols=66 Identities=23% Similarity=0.143 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccC------------------CCccHHHHHHHHhcc
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLL------------------RESMFDSVICARDRW 62 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~------------------~E~~l~~~~~a~~~~ 62 (280)
|++.|+++++.|+. .++++.++..+.. +.++|+|++.+.-.... +...+..++....++
T Consensus 53 ~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 129 (179)
T TIGR00537 53 AVKELRENAKLNNV--GLDVVMTDLFKGV-RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEI 129 (179)
T ss_pred HHHHHHHHHHHcCC--ceEEEEccccccc-CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHh
Confidence 46789999999987 3888998876643 46999999987521111 011245566666789
Q ss_pred cCCCeEE
Q 023569 63 LKPTGVM 69 (280)
Q Consensus 63 L~~~g~~ 69 (280)
|||||.+
T Consensus 130 Lk~gG~~ 136 (179)
T TIGR00537 130 LKEGGRV 136 (179)
T ss_pred hCCCCEE
Confidence 9999964
No 45
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=95.83 E-value=0.019 Score=54.42 Aligned_cols=72 Identities=25% Similarity=0.321 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHcCCC-CeEEEEeccccccc--C---CCcccEEEecCCCcccCCCc-------cHHHHHHHHhcccCCCe
Q 023569 1 MSDHARTLVKANNLQ-DVVEVIEGSVEDIV--L---PEKVDVIISEWMGYFLLRES-------MFDSVICARDRWLKPTG 67 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~-~~i~vi~~~~~~~~--l---~~~~DvivsE~~g~~l~~E~-------~l~~~~~a~~~~L~~~g 67 (280)
+++.|+++++.||++ ++|+++++|+.+.- + .+++|+||+++.- +..... -+..+.....++|+|||
T Consensus 255 al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG 333 (396)
T PRK15128 255 ALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPK-FVENKSQLMGACRGYKDINMLAIQLLNPGG 333 (396)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 367899999999997 58999999998762 2 3589999999874 222221 12333444568999999
Q ss_pred EEEccc
Q 023569 68 VMYPSH 73 (280)
Q Consensus 68 ~~iP~~ 73 (280)
.++=.+
T Consensus 334 ~lv~~s 339 (396)
T PRK15128 334 ILLTFS 339 (396)
T ss_pred EEEEEe
Confidence 876444
No 46
>PRK14967 putative methyltransferase; Provisional
Probab=95.83 E-value=0.032 Score=48.47 Aligned_cols=68 Identities=21% Similarity=0.141 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccC----------------CC--ccHHHHHHHHhcc
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLL----------------RE--SMFDSVICARDRW 62 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~----------------~E--~~l~~~~~a~~~~ 62 (280)
|++.|+++++.|++ .+++++++..+....+++|+|++++.-.-.. .+ ..+..++....++
T Consensus 71 ~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 148 (223)
T PRK14967 71 AVRSARLNALLAGV--DVDVRRGDWARAVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPAL 148 (223)
T ss_pred HHHHHHHHHHHhCC--eeEEEECchhhhccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHh
Confidence 35778889988887 3889998887643237899999996411000 01 1244555555689
Q ss_pred cCCCeEEE
Q 023569 63 LKPTGVMY 70 (280)
Q Consensus 63 L~~~g~~i 70 (280)
|||||+++
T Consensus 149 Lk~gG~l~ 156 (223)
T PRK14967 149 LAPGGSLL 156 (223)
T ss_pred cCCCcEEE
Confidence 99999987
No 47
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.75 E-value=0.021 Score=51.49 Aligned_cols=68 Identities=29% Similarity=0.335 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcc-cCCCccHHHHHHHHhcccCCCeEEEccc
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF-LLRESMFDSVICARDRWLKPTGVMYPSH 73 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~-l~~E~~l~~~~~a~~~~L~~~g~~iP~~ 73 (280)
.+.|++-+++-|++++|+|+-.+-++++ +++|-||| +|-+ -++..-.+.+.....++|+|||+++=+.
T Consensus 108 ~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvS--vgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 108 LAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVS--VGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred HHHHHHHHHHcCCCcccEEEeccccccc--cccceeee--hhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 5788999999999999999998877765 44999999 4433 2344456667777789999999886443
No 48
>PRK04457 spermidine synthase; Provisional
Probab=95.70 E-value=0.019 Score=51.33 Aligned_cols=70 Identities=17% Similarity=0.128 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccc--cCCCcccEEEecCCCcccCCCc-cHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVDVIISEWMGYFLLRES-MFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~--~l~~~~DvivsE~~g~~l~~E~-~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|++.+..++..++++++.+|..+. ..++++|+|+.+.++....-+. +...+.....+.|+|||+++
T Consensus 102 vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 102 VIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred HHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEE
Confidence 3567888777677677899999998765 2457899999987643222222 22344445557899999875
No 49
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.67 E-value=0.019 Score=56.18 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCc-------------------ccCC-C-c--cHHHHHH
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGY-------------------FLLR-E-S--MFDSVIC 57 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~-------------------~l~~-E-~--~l~~~~~ 57 (280)
+++.|+++++.||+.++|++++++..+..-++++|+|||++.-. .+++ + + .+..++.
T Consensus 174 al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~ 253 (506)
T PRK01544 174 AIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAE 253 (506)
T ss_pred HHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHH
Confidence 36789999999999999999999875422236899999987411 0111 1 1 1233555
Q ss_pred HHhcccCCCeEEEc
Q 023569 58 ARDRWLKPTGVMYP 71 (280)
Q Consensus 58 a~~~~L~~~g~~iP 71 (280)
...++|+|||.++=
T Consensus 254 ~a~~~L~~gG~l~l 267 (506)
T PRK01544 254 NAKQFLKPNGKIIL 267 (506)
T ss_pred HHHHhccCCCEEEE
Confidence 55689999997653
No 50
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=95.63 E-value=0.029 Score=52.25 Aligned_cols=66 Identities=23% Similarity=0.219 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCC--ccHHHHHHHHhcccCCCeEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRE--SMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E--~~l~~~~~a~~~~L~~~g~~ 69 (280)
|++.|+++++.|++.. +++.++..+ .+++++|+|||++.-...... .....++....++|||||.+
T Consensus 232 Al~~A~~nl~~n~l~~--~~~~~D~~~-~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L 299 (342)
T PRK09489 232 ALESSRATLAANGLEG--EVFASNVFS-DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGEL 299 (342)
T ss_pred HHHHHHHHHHHcCCCC--EEEEccccc-ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEE
Confidence 4678999999999864 556666544 346899999999853322221 34455666667899999976
No 51
>PLN02476 O-methyltransferase
Probab=95.62 E-value=0.021 Score=51.51 Aligned_cols=71 Identities=11% Similarity=0.064 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccc--cC-----CCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccc
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDI--VL-----PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 74 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~--~l-----~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a 74 (280)
++.|+++++++|++++|+++.|+..+. .+ .+++|+|+-..- -+...+ +.....++|+|||.++=+-+
T Consensus 156 ~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~-----K~~Y~~-y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 156 LEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD-----KRMYQD-YFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred HHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC-----HHHHHH-HHHHHHHhcCCCcEEEEecC
Confidence 689999999999999999999998775 22 257999987642 123333 33444578999998876555
Q ss_pred eEEE
Q 023569 75 RMWV 78 (280)
Q Consensus 75 ~ly~ 78 (280)
-..+
T Consensus 230 L~~G 233 (278)
T PLN02476 230 LWHG 233 (278)
T ss_pred ccCC
Confidence 4333
No 52
>PRK14968 putative methyltransferase; Provisional
Probab=95.56 E-value=0.038 Score=45.98 Aligned_cols=70 Identities=27% Similarity=0.301 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHcCCCCe-EEEEecccccccCCCcccEEEecCCCcc--------------c-C---CCccHHHHHHHHhc
Q 023569 1 MSDHARTLVKANNLQDV-VEVIEGSVEDIVLPEKVDVIISEWMGYF--------------L-L---RESMFDSVICARDR 61 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~-i~vi~~~~~~~~l~~~~DvivsE~~g~~--------------l-~---~E~~l~~~~~a~~~ 61 (280)
|++.|++.+..|+++++ ++++.++..+-..+.++|+|++++.-.. . . +-..+..++....+
T Consensus 57 ~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 136 (188)
T PRK14968 57 AVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGR 136 (188)
T ss_pred HHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHH
Confidence 45788999999999766 8888888766433358999999764211 0 0 01124455666678
Q ss_pred ccCCCeEEE
Q 023569 62 WLKPTGVMY 70 (280)
Q Consensus 62 ~L~~~g~~i 70 (280)
+|||||.++
T Consensus 137 ~Lk~gG~~~ 145 (188)
T PRK14968 137 YLKPGGRIL 145 (188)
T ss_pred hcCCCeEEE
Confidence 999999765
No 53
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=95.55 E-value=0.02 Score=52.88 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|++....+++.++|+++.++++++..+ +++|+|++- +..---. -.+.++....++|||||.++
T Consensus 165 ~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~--~vLeHv~-d~~~~L~~l~r~LkPGG~li 232 (322)
T PLN02396 165 NVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSL--EVIEHVA-NPAEFCKSLSALTIPNGATV 232 (322)
T ss_pred HHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEh--hHHHhcC-CHHHHHHHHHHHcCCCcEEE
Confidence 4677887777777777899999999988755 689999982 2111011 12345555568999999876
No 54
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=95.53 E-value=0.04 Score=47.04 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEE
Q 023569 3 DHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 3 ~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
+.++++++.++++ |+....|+.+..+++.+|+|+|-.+-.++- ...++.++...+..++|||..
T Consensus 66 ~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~-~~~~~~i~~~m~~~~~pGG~~ 129 (192)
T PF03848_consen 66 EKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQ-RELRPQIIENMKAATKPGGYN 129 (192)
T ss_dssp HHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS--GGGHHHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEeccCC-HHHHHHHHHHHHhhcCCcEEE
Confidence 5677888889987 899999999999999999999976554444 446677888888899999963
No 55
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=95.50 E-value=0.037 Score=47.79 Aligned_cols=66 Identities=23% Similarity=0.315 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
++.|++.+..+++..+++++.++..++..+ .++|+|++-. .+-.=.....++....++|+|||.++
T Consensus 89 ~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~---~l~~~~~~~~~l~~~~~~L~~gG~li 155 (239)
T PRK00216 89 LAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF---GLRNVPDIDKALREMYRVLKPGGRLV 155 (239)
T ss_pred HHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec---ccccCCCHHHHHHHHHHhccCCcEEE
Confidence 567788777777877899999999887765 7899998732 12111234555666678999999765
No 56
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.50 E-value=0.03 Score=48.35 Aligned_cols=62 Identities=23% Similarity=0.184 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEE-Ecc
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM-YPS 72 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~-iP~ 72 (280)
|++.|++.++.+|+++ |+++.++..+...+ .++|+|++..- .+.+.. +..+.|||||++ +|.
T Consensus 113 ~~~~a~~~l~~~g~~~-v~~~~gd~~~~~~~~~~fD~I~~~~~-----~~~~~~----~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 113 LAEKAKKTLKKLGYDN-VEVIVGDGTLGYEENAPYDRIYVTAA-----GPDIPK----PLIEQLKDGGIMVIPV 176 (212)
T ss_pred HHHHHHHHHHHcCCCC-eEEEECCcccCCCcCCCcCEEEECCC-----cccchH----HHHHhhCCCcEEEEEE
Confidence 5788999999999865 99999998765433 68999987521 233333 233579999964 553
No 57
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=95.49 E-value=0.028 Score=48.57 Aligned_cols=60 Identities=18% Similarity=0.129 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccC-CCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l-~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|++.++.+|+.+ |+++.++..+... ..++|+|++... .+.+.+. ..+.|+|||+++
T Consensus 114 ~~~~A~~~~~~~g~~~-v~~~~~d~~~~~~~~~~fD~Ii~~~~-----~~~~~~~----~~~~L~~gG~lv 174 (215)
T TIGR00080 114 LAEKAERRLRKLGLDN-VIVIVGDGTQGWEPLAPYDRIYVTAA-----GPKIPEA----LIDQLKEGGILV 174 (215)
T ss_pred HHHHHHHHHHHCCCCC-eEEEECCcccCCcccCCCCEEEEcCC-----cccccHH----HHHhcCcCcEEE
Confidence 4688999999999954 9999999876532 268999997532 2333332 235799999764
No 58
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.40 E-value=0.021 Score=58.09 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHcCCC-CeEEEEecccccc--cCCCcccEEEecCCCcccCCC---------ccHHHHHHHHhcccCCCeE
Q 023569 1 MSDHARTLVKANNLQ-DVVEVIEGSVEDI--VLPEKVDVIISEWMGYFLLRE---------SMFDSVICARDRWLKPTGV 68 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~-~~i~vi~~~~~~~--~l~~~~DvivsE~~g~~l~~E---------~~l~~~~~a~~~~L~~~g~ 68 (280)
+++.|+++++.||++ ++++++++|+.+. .+++++|+||+++.-.. ..+ .....+.....++|+|||.
T Consensus 573 al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~-~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~ 651 (702)
T PRK11783 573 YLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFS-NSKRMEDSFDVQRDHVALIKDAKRLLRPGGT 651 (702)
T ss_pred HHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCCC-CCCccchhhhHHHHHHHHHHHHHHHcCCCCE
Confidence 367899999999997 7899999998774 24578999999986322 111 1123344445678999997
Q ss_pred EE
Q 023569 69 MY 70 (280)
Q Consensus 69 ~i 70 (280)
++
T Consensus 652 l~ 653 (702)
T PRK11783 652 LY 653 (702)
T ss_pred EE
Confidence 65
No 59
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=95.40 E-value=0.037 Score=53.21 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc--CCCcccEEEecCC--CcccCC----------Ccc-------HHHHHHHHh
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWM--GYFLLR----------ESM-------FDSVICARD 60 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l~~~~DvivsE~~--g~~l~~----------E~~-------l~~~~~a~~ 60 (280)
++.|+++++.+|+.+ |+++++|..++. +++++|+|++++. |.+.+. +.- ...++....
T Consensus 288 l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~ 366 (444)
T PRK14902 288 LKLIEENAKRLGLTN-IETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVA 366 (444)
T ss_pred HHHHHHHHHHcCCCe-EEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 567899999999987 999999998863 4578999999975 222221 111 123555566
Q ss_pred cccCCCeEEE
Q 023569 61 RWLKPTGVMY 70 (280)
Q Consensus 61 ~~L~~~g~~i 70 (280)
++|||||.++
T Consensus 367 ~~LkpGG~lv 376 (444)
T PRK14902 367 QYLKKGGILV 376 (444)
T ss_pred HHcCCCCEEE
Confidence 8999999987
No 60
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=95.37 E-value=0.048 Score=48.69 Aligned_cols=67 Identities=21% Similarity=0.105 Sum_probs=42.9
Q ss_pred CHHHHHHHHH--HcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVK--ANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~--~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|++-.. .++..++|+++.++.++++++ +.+|+|++... +-+-.-...++....|.|||||.++
T Consensus 110 ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~---l~~~~d~~~~l~ei~rvLkpGG~l~ 179 (261)
T PLN02233 110 QLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGYG---LRNVVDRLKAMQEMYRVLKPGSRVS 179 (261)
T ss_pred HHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEecc---cccCCCHHHHHHHHHHHcCcCcEEE
Confidence 4556655432 233345699999999999887 68999987432 1111123344445568999999863
No 61
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=95.37 E-value=0.038 Score=47.35 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHcCCCCeEEEEeccc-cccc--CC-CcccEEEecCCCcccC--C---CccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSV-EDIV--LP-EKVDVIISEWMGYFLL--R---ESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~-~~~~--l~-~~~DvivsE~~g~~l~--~---E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|++.++.+++.+ |+++.++. +.+. ++ +.+|+|++........ . ....+.++....++|||||.++
T Consensus 76 ~i~~a~~~~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~ 153 (202)
T PRK00121 76 GVGKALKKIEEEGLTN-LRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIH 153 (202)
T ss_pred HHHHHHHHHHHcCCCC-EEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEE
Confidence 4678888899999854 99999999 7765 54 7899999864322111 1 1123455556678999999875
No 62
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=95.35 E-value=0.015 Score=52.92 Aligned_cols=62 Identities=24% Similarity=0.345 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcc
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 72 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~ 72 (280)
.+.|+++++.||+++++++. ...+. ...++|+|+++++.. .|-.+.....++|+|||.+|-+
T Consensus 197 v~~a~~N~~~N~~~~~~~v~--~~~~~-~~~~~dlvvANI~~~------vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 197 VEAARENAELNGVEDRIEVS--LSEDL-VEGKFDLVVANILAD------VLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp HHHHHHHHHHTT-TTCEEES--CTSCT-CCS-EEEEEEES-HH------HHHHHHHHCHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCeeEEEE--Eeccc-ccccCCEEEECCCHH------HHHHHHHHHHHhhCCCCEEEEc
Confidence 47899999999999988874 12221 228999999998653 3333444556789999988753
No 63
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.30 E-value=0.039 Score=49.32 Aligned_cols=69 Identities=20% Similarity=0.156 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCC--CcccCC----------Cc-------cHHHHHHHHh
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWM--GYFLLR----------ES-------MFDSVICARD 60 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~--g~~l~~----------E~-------~l~~~~~a~~ 60 (280)
+++.++++++.+|+.+ |++++++.+++..+ .++|.|+..+. |.+.+. +. ....++....
T Consensus 108 ~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~ 186 (264)
T TIGR00446 108 RTKVLIANINRCGVLN-VAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAF 186 (264)
T ss_pred HHHHHHHHHHHcCCCc-EEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999976 99999998876543 67999999875 332221 11 1123555556
Q ss_pred cccCCCeEEE
Q 023569 61 RWLKPTGVMY 70 (280)
Q Consensus 61 ~~L~~~g~~i 70 (280)
++|||||+++
T Consensus 187 ~~lkpgG~lv 196 (264)
T TIGR00446 187 DALKPGGVLV 196 (264)
T ss_pred HhcCCCCEEE
Confidence 8999999987
No 64
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=95.19 E-value=0.0089 Score=45.00 Aligned_cols=65 Identities=17% Similarity=0.340 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCe
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTG 67 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g 67 (280)
|.+.|++..+..+. .+++++++..++..+ +++|+|++--.....+....+..++....++|+|||
T Consensus 36 ~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 36 MLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp HHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 45677887777666 588999999997644 699999992111123555666667766678999987
No 65
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=95.16 E-value=0.067 Score=47.35 Aligned_cols=60 Identities=25% Similarity=0.297 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
++.|++++++-|+.|+|++..+|+.+...++.+|.|+-.+.+ =...++ .....|||||.+
T Consensus 132 ~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDmp~----PW~~le----~~~~~Lkpgg~~ 191 (256)
T COG2519 132 AKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDLPD----PWNVLE----HVSDALKPGGVV 191 (256)
T ss_pred HHHHHHHHHHhccccceEEEeccccccccccccCEEEEcCCC----hHHHHH----HHHHHhCCCcEE
Confidence 789999999999999999999999999888899999998754 123333 335789999764
No 66
>PHA03412 putative methyltransferase; Provisional
Probab=95.11 E-value=0.048 Score=48.04 Aligned_cols=57 Identities=12% Similarity=-0.075 Sum_probs=39.5
Q ss_pred EEEEecccccccCCCcccEEEecCCCcc-------cCCCcc--HHHHHHHHhcccCCCeEEEcccc
Q 023569 18 VEVIEGSVEDIVLPEKVDVIISEWMGYF-------LLRESM--FDSVICARDRWLKPTGVMYPSHA 74 (280)
Q Consensus 18 i~vi~~~~~~~~l~~~~DvivsE~~g~~-------l~~E~~--l~~~~~a~~~~L~~~g~~iP~~a 74 (280)
+.+++++.....++.++|+|||+|.-.- ....+. ...++....+++++|+.|+|...
T Consensus 99 ~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 99 ATWINADALTTEFDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred CEEEEcchhcccccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 8899999887666679999999996321 111122 23355444469999999999864
No 67
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.09 E-value=0.044 Score=48.54 Aligned_cols=57 Identities=25% Similarity=0.320 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|+++++.|++.+++++..++. ++|+|++.+.. + .+..++....++|||||.++
T Consensus 154 ~l~~A~~n~~~~~~~~~~~~~~~~~-------~fD~Vvani~~-----~-~~~~l~~~~~~~LkpgG~li 210 (250)
T PRK00517 154 AVEAARENAELNGVELNVYLPQGDL-------KADVIVANILA-----N-PLLELAPDLARLLKPGGRLI 210 (250)
T ss_pred HHHHHHHHHHHcCCCceEEEccCCC-------CcCEEEEcCcH-----H-HHHHHHHHHHHhcCCCcEEE
Confidence 4678999999999987777766542 79999997542 2 23334444567899999887
No 68
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=95.03 E-value=0.055 Score=46.64 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHcCCCCeEEEEeccccccc-CC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIV-LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~-l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|-+.|.+-+++|.-...-.++.++.+++. |+ .++|+||+-.. ....|.....+.. ..|+|+|||++|
T Consensus 111 mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv--LCSve~~~k~L~e-~~rlLRpgG~ii 179 (252)
T KOG4300|consen 111 MEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV--LCSVEDPVKQLNE-VRRLLRPGGRII 179 (252)
T ss_pred HHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE--EeccCCHHHHHHH-HHHhcCCCcEEE
Confidence 45678888888866553349999999997 77 79999998542 2244666665544 458999999875
No 69
>PLN03075 nicotianamine synthase; Provisional
Probab=94.99 E-value=0.062 Score=48.90 Aligned_cols=71 Identities=20% Similarity=0.197 Sum_probs=49.1
Q ss_pred CHHHHHHHHHH-cCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEccc
Q 023569 1 MSDHARTLVKA-NNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 73 (280)
Q Consensus 1 ma~~A~~~i~~-Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~ 73 (280)
+++.||+.+++ .|++++|++..+|..++..+ .++|+|++-.+-++ .-+. -..++..-.+.|+|||.++=..
T Consensus 161 ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~-dk~~-k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 161 ANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLAALVGM-DKEE-KVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred HHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEeccccc-cccc-HHHHHHHHHHhcCCCcEEEEec
Confidence 46789999965 89999999999999886433 78999999732111 1122 2333333457899999887444
No 70
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=94.96 E-value=0.063 Score=51.55 Aligned_cols=69 Identities=12% Similarity=0.151 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHcCCCCeEEEEeccccccc----C-CCcccEEEecCCCc--ccCCC--c---------------cHHHHH
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIV----L-PEKVDVIISEWMGY--FLLRE--S---------------MFDSVI 56 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~----l-~~~~DvivsE~~g~--~l~~E--~---------------~l~~~~ 56 (280)
|++.++++++.+|+.+ |+++.++.+++. . ++++|.|+....-+ +.+.. . ....++
T Consensus 289 rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL 367 (434)
T PRK14901 289 RLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELL 367 (434)
T ss_pred HHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHH
Confidence 4678899999999987 999999998874 2 36899999987632 23221 0 023455
Q ss_pred HHHhcccCCCeEEE
Q 023569 57 CARDRWLKPTGVMY 70 (280)
Q Consensus 57 ~a~~~~L~~~g~~i 70 (280)
.+..++|||||+++
T Consensus 368 ~~a~~~lkpgG~lv 381 (434)
T PRK14901 368 ESLAPLLKPGGTLV 381 (434)
T ss_pred HHHHHhcCCCCEEE
Confidence 55668999999986
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=94.96 E-value=0.081 Score=46.24 Aligned_cols=41 Identities=20% Similarity=0.087 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCC
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 42 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~ 42 (280)
|++.|+++++.++++ ++++++++..+..-.+++|+|++++.
T Consensus 123 ~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~npP 163 (251)
T TIGR03534 123 ALAVARKNAARLGLD-NVTFLQSDWFEPLPGGKFDLIVSNPP 163 (251)
T ss_pred HHHHHHHHHHHcCCC-eEEEEECchhccCcCCceeEEEECCC
Confidence 467899999999997 59999999876322378999999875
No 72
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.86 E-value=0.053 Score=43.86 Aligned_cols=67 Identities=27% Similarity=0.445 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc--CCC-cccEEEecCCCcccCCC--------ccHHHHHHHHhcccCCCeEEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV--LPE-KVDVIISEWMGYFLLRE--------SMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l~~-~~DvivsE~~g~~l~~E--------~~l~~~~~a~~~~L~~~g~~i 70 (280)
.+.+++.++.+++.++|++++..-+.+. +++ ++|.+|-+ +||..-+. ..+..+.. .-.+|+|||+++
T Consensus 12 i~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN-LGYLPggDk~i~T~~~TTl~Al~~-al~lL~~gG~i~ 89 (140)
T PF06962_consen 12 IENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN-LGYLPGGDKSITTKPETTLKALEA-ALELLKPGGIIT 89 (140)
T ss_dssp HHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE-ESB-CTS-TTSB--HHHHHHHHHH-HHHHEEEEEEEE
T ss_pred HHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE-CCcCCCCCCCCCcCcHHHHHHHHH-HHHhhccCCEEE
Confidence 3567888999999999999999888886 566 99999998 57654342 34444443 347899999874
No 73
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=94.77 E-value=0.066 Score=51.01 Aligned_cols=40 Identities=30% Similarity=0.238 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC--CcccEEEecCC
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEWM 42 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~--~~~DvivsE~~ 42 (280)
|++.|+++++.|+. +|++++++..+..+| .++|+|||++.
T Consensus 287 ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 287 ALETARKNAADLGA--RVEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred HHHHHHHHHHHcCC--cEEEEEcchhccccccCCCccEEEECCC
Confidence 46889999988875 699999998665443 58999999985
No 74
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=94.70 E-value=0.063 Score=46.07 Aligned_cols=64 Identities=11% Similarity=0.200 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc--CCCcccEEEecCCCcccCCCccHHHHHHH--HhcccCCCeEEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWMGYFLLRESMFDSVICA--RDRWLKPTGVMY 70 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l~~~~DvivsE~~g~~l~~E~~l~~~~~a--~~~~L~~~g~~i 70 (280)
++.|+++++.||++ +++++++++.+.- ..+++|+|+++|.- .+++.+.++.. ...+|+|++.++
T Consensus 89 ~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPPy----~~g~~~~~l~~l~~~~~l~~~~iv~ 156 (199)
T PRK10909 89 AQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPPF----RKGLLEETINLLEDNGWLADEALIY 156 (199)
T ss_pred HHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCCC----CCChHHHHHHHHHHCCCcCCCcEEE
Confidence 56889999999986 4999999987642 22569999999983 23444443332 234566666444
No 75
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=94.68 E-value=0.047 Score=45.99 Aligned_cols=64 Identities=25% Similarity=0.351 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccC-CCcccEEEecCC-CcccCCC----ccHHHHHHHHhcccCC
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEWM-GYFLLRE----SMFDSVICARDRWLKP 65 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l-~~~~DvivsE~~-g~~l~~E----~~l~~~~~a~~~~L~~ 65 (280)
++.|+++++..|+++.|.+.++|.+++.+ ++.+|+||+++. |--+-.+ .....+.....+.|++
T Consensus 74 v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 74 VRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp HHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred HHHHHHHHHhcccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 57899999999999999999999999995 489999999995 3222211 2334444555566776
No 76
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=94.63 E-value=0.054 Score=46.75 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc--C-----CCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccc
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV--L-----PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 74 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l-----~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a 74 (280)
++.|+++++..|++++|+++.++..++- + +.++|+|.-.-- -+.....+. ...++|+|||.++=+-+
T Consensus 83 ~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~-----K~~y~~y~~-~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 83 AEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD-----KRNYLEYFE-KALPLLRPGGVIIADNV 156 (205)
T ss_dssp HHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST-----GGGHHHHHH-HHHHHEEEEEEEEEETT
T ss_pred HHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc-----ccchhhHHH-HHhhhccCCeEEEEccc
Confidence 6889999999999999999999988751 2 247999987641 123333333 33479999999875554
Q ss_pred eEEE
Q 023569 75 RMWV 78 (280)
Q Consensus 75 ~ly~ 78 (280)
-..+
T Consensus 157 l~~G 160 (205)
T PF01596_consen 157 LWRG 160 (205)
T ss_dssp TGGG
T ss_pred cccc
Confidence 4443
No 77
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=94.60 E-value=0.085 Score=44.80 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHcCCCCeEEEEeccccccc---CC-CcccEEEecCCCcccC-----CCccHHHHHHHHhcccCCCeEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIV---LP-EKVDVIISEWMGYFLL-----RESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~---l~-~~~DvivsE~~g~~l~-----~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
|++.|++.++.++++ +|+++++++.++. ++ ..+|.|+....+...- ..-..+.++....+.|||||.+
T Consensus 52 ~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l 128 (194)
T TIGR00091 52 IVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVI 128 (194)
T ss_pred HHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEE
Confidence 467888888999997 4999999998764 44 5799999875432110 1112244555556899999986
No 78
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=94.59 E-value=0.044 Score=48.96 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=37.2
Q ss_pred CCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 15 QDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 15 ~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
.++|+++.++..+.++| +++|+|++...-.....+. ...++....++|||||.++
T Consensus 98 ~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d-~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 98 KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYAD-KKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHH-HHHHHHHHHHHcCCCcEEE
Confidence 46799999999887777 6899999942111111122 3445555568999999876
No 79
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=94.55 E-value=0.078 Score=46.17 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHcCCCCeEEEEec-cccccc---CCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccceE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEG-SVEDIV---LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 76 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~-~~~~~~---l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a~l 76 (280)
+++.|++++++.|++++|+++.+ +.-+.- +.+.+|+|.-.- .-+-.+.++...-++|+|||.++=+.+-.
T Consensus 96 ~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 96 RAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred HHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 47899999999999999999994 655542 348899987642 11223444455567899999998777766
Q ss_pred EEEEe
Q 023569 77 WVAPI 81 (280)
Q Consensus 77 y~~~v 81 (280)
.+...
T Consensus 170 ~G~v~ 174 (219)
T COG4122 170 GGRVA 174 (219)
T ss_pred CCccC
Confidence 65444
No 80
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=94.46 E-value=0.11 Score=50.15 Aligned_cols=70 Identities=23% Similarity=0.251 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCC--CcccCC----------Ccc-------HHHHHHHHhc
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM--GYFLLR----------ESM-------FDSVICARDR 61 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~--g~~l~~----------E~~-------l~~~~~a~~~ 61 (280)
|++.|+++++.+|+.+ |+++.++..++..++++|+|+..+. |++.+. +.. ...++....+
T Consensus 287 ~l~~~~~~~~~~g~~~-v~~~~~Da~~~~~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~ 365 (445)
T PRK14904 287 KLEKIRSHASALGITI-IETIEGDARSFSPEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAAS 365 (445)
T ss_pred HHHHHHHHHHHhCCCe-EEEEeCcccccccCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999964 9999999988754478999998864 333322 111 1235556668
Q ss_pred ccCCCeEEEc
Q 023569 62 WLKPTGVMYP 71 (280)
Q Consensus 62 ~L~~~g~~iP 71 (280)
+|||||+++=
T Consensus 366 ~lkpgG~lvy 375 (445)
T PRK14904 366 LLKPGGVLVY 375 (445)
T ss_pred hcCCCcEEEE
Confidence 9999998753
No 81
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=94.45 E-value=0.099 Score=50.59 Aligned_cols=64 Identities=22% Similarity=0.205 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
++.|++.. .+...+|+++.++..+..+| +++|+|+|.-+ ..-... .+.++....++|||||.++
T Consensus 302 l~~A~~~~--~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~--l~h~~d-~~~~l~~~~r~LkpgG~l~ 366 (475)
T PLN02336 302 ISFALERA--IGRKCSVEFEVADCTKKTYPDNSFDVIYSRDT--ILHIQD-KPALFRSFFKWLKPGGKVL 366 (475)
T ss_pred HHHHHHHh--hcCCCceEEEEcCcccCCCCCCCEEEEEECCc--ccccCC-HHHHHHHHHHHcCCCeEEE
Confidence 44555543 35667899999999888877 68999999532 111122 2344445568999999877
No 82
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=94.44 E-value=0.1 Score=47.26 Aligned_cols=39 Identities=28% Similarity=0.233 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCC
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 42 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~ 42 (280)
++.|+++++.||+ .++.++.++..+ .++.++|+|||+|.
T Consensus 147 l~~A~~Na~~~~l-~~~~~~~~dlf~-~~~~~fDlIVsNPP 185 (280)
T COG2890 147 LALARENAERNGL-VRVLVVQSDLFE-PLRGKFDLIVSNPP 185 (280)
T ss_pred HHHHHHHHHHcCC-ccEEEEeeeccc-ccCCceeEEEeCCC
Confidence 4689999999999 556666653222 34469999999995
No 83
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=94.40 E-value=0.073 Score=47.28 Aligned_cols=66 Identities=23% Similarity=0.287 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHcCCCCeEEEEeccccccc---CCCcccEEEecCCCc--cc----C-----CC------------ccHHH
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIV---LPEKVDVIISEWMGY--FL----L-----RE------------SMFDS 54 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~---l~~~~DvivsE~~g~--~l----~-----~E------------~~l~~ 54 (280)
+++.|+++++.||. ++++++..+.. +..++|+||+++.-. .- . +| ..+..
T Consensus 122 al~~A~~N~~~~~~----~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~ 197 (251)
T TIGR03704 122 AVRCARRNLADAGG----TVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRR 197 (251)
T ss_pred HHHHHHHHHHHcCC----EEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHH
Confidence 35788999988873 67888876532 236799999998521 00 0 11 12446
Q ss_pred HHHHHhcccCCCeEEE
Q 023569 55 VICARDRWLKPTGVMY 70 (280)
Q Consensus 55 ~~~a~~~~L~~~g~~i 70 (280)
++....++|||||.++
T Consensus 198 i~~~a~~~L~~gG~l~ 213 (251)
T TIGR03704 198 VAAGAPDWLAPGGHLL 213 (251)
T ss_pred HHHHHHHhcCCCCEEE
Confidence 6666678999999865
No 84
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=94.30 E-value=0.1 Score=46.38 Aligned_cols=73 Identities=10% Similarity=0.079 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccc--cC------CCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEccc
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDI--VL------PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSH 73 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~--~l------~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~ 73 (280)
++.|+++++..|++++|+++.|+..++ .+ .+++|+|.-.-- -+..++.+. ...++|+|||.++=+-
T Consensus 117 ~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~-~~l~ll~~GGviv~DN 190 (247)
T PLN02589 117 YELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHK-RLIDLVKVGGVIGYDN 190 (247)
T ss_pred HHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC-----HHHhHHHHH-HHHHhcCCCeEEEEcC
Confidence 678999999999999999999998775 22 258998887631 334444443 3347999999987655
Q ss_pred ceEEEEE
Q 023569 74 ARMWVAP 80 (280)
Q Consensus 74 a~ly~~~ 80 (280)
+-..+..
T Consensus 191 vl~~G~v 197 (247)
T PLN02589 191 TLWNGSV 197 (247)
T ss_pred CCCCCcc
Confidence 5444443
No 85
>PRK00811 spermidine synthase; Provisional
Probab=94.29 E-value=0.1 Score=47.25 Aligned_cols=71 Identities=20% Similarity=0.183 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHc--CC--CCeEEEEeccccccc--CCCcccEEEecCCCcccCCCcc-HHHHHHHHhcccCCCeEEEc
Q 023569 1 MSDHARTLVKAN--NL--QDVVEVIEGSVEDIV--LPEKVDVIISEWMGYFLLRESM-FDSVICARDRWLKPTGVMYP 71 (280)
Q Consensus 1 ma~~A~~~i~~N--gl--~~~i~vi~~~~~~~~--l~~~~DvivsE~~g~~l~~E~~-l~~~~~a~~~~L~~~g~~iP 71 (280)
|++.|++.+... ++ +.+|+++.+|..+.- .++++|+||++..+.....+.. -..+.....+.|+|||+++=
T Consensus 112 vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 112 VVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred HHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 467788877542 33 468999999987753 2478999999876544333322 13344445688999999873
No 86
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=94.29 E-value=0.13 Score=47.53 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=37.4
Q ss_pred CCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 14 LQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 14 l~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
...+|+++.+++++++.++++|+|+|- +...-.... ..++....+.|+|||.++
T Consensus 170 ~~~~i~~~~~d~e~lp~~~~FD~V~s~--~vl~H~~dp-~~~L~~l~~~LkpGG~lv 223 (322)
T PRK15068 170 NDQRAHLLPLGIEQLPALKAFDTVFSM--GVLYHRRSP-LDHLKQLKDQLVPGGELV 223 (322)
T ss_pred CCCCeEEEeCCHHHCCCcCCcCEEEEC--ChhhccCCH-HHHHHHHHHhcCCCcEEE
Confidence 345799999999998888899999993 322111222 334444557899999876
No 87
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=94.27 E-value=0.068 Score=48.68 Aligned_cols=65 Identities=22% Similarity=0.249 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcc
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 72 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~ 72 (280)
.+.|+.+++.|+....+++-..+..+..-.+++|+||++++- + .+..+..--.++|||||.+|=+
T Consensus 198 V~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA-----~-vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 198 VEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA-----E-VLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred HHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH-----H-HHHHHHHHHHHHcCCCceEEEE
Confidence 468999999999986443333333222222699999999752 2 2223333345789999987743
No 88
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.92 E-value=0.11 Score=48.82 Aligned_cols=54 Identities=22% Similarity=0.226 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcc-cCCCccHHH
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYF-LLRESMFDS 54 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~-l~~E~~l~~ 54 (280)
|.+.|+.++++.|+++.|++.+++++++.-| +.+|+|||++.--. +-.+.+++.
T Consensus 266 ~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~ 321 (381)
T COG0116 266 HIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAK 321 (381)
T ss_pred HHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHH
Confidence 4689999999999999999999999999877 89999999997322 333444443
No 89
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=93.89 E-value=0.17 Score=43.43 Aligned_cols=60 Identities=20% Similarity=0.104 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|++.++.+|+.+ |+++.++..+...+ .++|+|++... .+.+.. ...+.|+|||+++
T Consensus 112 ~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~I~~~~~-----~~~~~~----~l~~~L~~gG~lv 172 (212)
T PRK00312 112 LQWEAKRRLKQLGLHN-VSVRHGDGWKGWPAYAPFDRILVTAA-----APEIPR----ALLEQLKEGGILV 172 (212)
T ss_pred HHHHHHHHHHHCCCCc-eEEEECCcccCCCcCCCcCEEEEccC-----chhhhH----HHHHhcCCCcEEE
Confidence 4578899999999977 99999987653223 68999998531 122333 2346899999765
No 90
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=93.67 E-value=0.16 Score=43.32 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=38.3
Q ss_pred CCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 14 LQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 14 l~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
..++++++.+++.++..+ +++|+|++... +-.......++....++|+|||.++
T Consensus 86 ~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 86 LPLNIEFIQADAEALPFEDNSFDAVTIAFG---LRNVTDIQKALREMYRVLKPGGRLV 140 (223)
T ss_pred cCCCceEEecchhcCCCCCCcEEEEEEeee---eCCcccHHHHHHHHHHHcCCCcEEE
Confidence 446799999999988765 68999987421 2222334556666678999999765
No 91
>PLN02366 spermidine synthase
Probab=93.52 E-value=0.16 Score=46.51 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=49.8
Q ss_pred CHHHHHHHHHH--cCCC-CeEEEEecccccc--cC-CCcccEEEecCCCcccCCCcc-HHHHHHHHhcccCCCeEEEccc
Q 023569 1 MSDHARTLVKA--NNLQ-DVVEVIEGSVEDI--VL-PEKVDVIISEWMGYFLLRESM-FDSVICARDRWLKPTGVMYPSH 73 (280)
Q Consensus 1 ma~~A~~~i~~--Ngl~-~~i~vi~~~~~~~--~l-~~~~DvivsE~~g~~l~~E~~-l~~~~~a~~~~L~~~g~~iP~~ 73 (280)
|++.|++.+.. ++++ .|++++.+|..+. .. ++++|+||+...+........ -..+.....+.|+|||+++-+.
T Consensus 127 Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 127 VIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred HHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 35678887643 2464 5999999997654 24 368999999876543222211 1334444567899999987665
Q ss_pred ceEEE
Q 023569 74 ARMWV 78 (280)
Q Consensus 74 a~ly~ 78 (280)
...|.
T Consensus 207 ~s~~~ 211 (308)
T PLN02366 207 ESMWL 211 (308)
T ss_pred CCccc
Confidence 54443
No 92
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=93.46 E-value=0.25 Score=43.95 Aligned_cols=67 Identities=22% Similarity=0.297 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHcCCCCe--EEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDV--VEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~--i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|...|++=.++-++... +..+.+|.+++++| ..+|..+.- .+.-+=.-.+..+....|.|||||++.
T Consensus 142 mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTia---fGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 142 MLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIA---FGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred HHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEe---cceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 45566666666788654 99999999999999 899987762 222222223333444569999999765
No 93
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=93.43 E-value=0.17 Score=47.88 Aligned_cols=75 Identities=24% Similarity=0.240 Sum_probs=53.0
Q ss_pred HHHHHHHHHHcCCC-CeEEEEeccccccc-----CCCcccEEEecCCCcccCCCcc-------HHHHHHHHhcccCCCeE
Q 023569 2 SDHARTLVKANNLQ-DVVEVIEGSVEDIV-----LPEKVDVIISEWMGYFLLRESM-------FDSVICARDRWLKPTGV 68 (280)
Q Consensus 2 a~~A~~~i~~Ngl~-~~i~vi~~~~~~~~-----l~~~~DvivsE~~g~~l~~E~~-------l~~~~~a~~~~L~~~g~ 68 (280)
.+.|+++++.||+. +++.+|.+|+-+.- -.+++||||-.|.... -+..+ ...+.....++|+|||.
T Consensus 253 l~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~-r~k~~~~~~~rdy~~l~~~~~~iL~pgG~ 331 (393)
T COG1092 253 LEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFA-RSKKQEFSAQRDYKDLNDLALRLLAPGGT 331 (393)
T ss_pred HHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccc-cCcccchhHHHHHHHHHHHHHHHcCCCCE
Confidence 46899999999995 78999999988762 2369999999997422 22211 23344445688999998
Q ss_pred EEcccceEE
Q 023569 69 MYPSHARMW 77 (280)
Q Consensus 69 ~iP~~a~ly 77 (280)
++=+.++-.
T Consensus 332 l~~~s~~~~ 340 (393)
T COG1092 332 LVTSSCSRH 340 (393)
T ss_pred EEEEecCCc
Confidence 875554433
No 94
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=93.35 E-value=0.22 Score=47.61 Aligned_cols=70 Identities=17% Similarity=0.092 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccC---CCcccEEEecCC--CcccCCCc-----------------cHHHHHHH
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVL---PEKVDVIISEWM--GYFLLRES-----------------MFDSVICA 58 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l---~~~~DvivsE~~--g~~l~~E~-----------------~l~~~~~a 58 (280)
|++.|+++++.+|+..+++++.++..+... .+++|.|+.+.. |++.+... ....++..
T Consensus 274 ~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~ 353 (426)
T TIGR00563 274 RLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDA 353 (426)
T ss_pred HHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHH
Confidence 467889999999998666668877765543 368999999875 44444321 12345555
Q ss_pred HhcccCCCeEEE
Q 023569 59 RDRWLKPTGVMY 70 (280)
Q Consensus 59 ~~~~L~~~g~~i 70 (280)
..++|||||.++
T Consensus 354 a~~~LkpgG~lv 365 (426)
T TIGR00563 354 IWPLLKTGGTLV 365 (426)
T ss_pred HHHhcCCCcEEE
Confidence 568999999987
No 95
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=93.32 E-value=0.055 Score=40.29 Aligned_cols=63 Identities=25% Similarity=0.336 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCCCeEEEEecccccc---cCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEE
Q 023569 3 DHARTLVKANNLQDVVEVIEGSVEDI---VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 3 ~~A~~~i~~Ngl~~~i~vi~~~~~~~---~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
+.|++-+..++..+ .+.++....+. ..++++|+|++--.-..+ +.+. .++....++|||||.+
T Consensus 34 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l--~~~~-~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 34 ERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVASNVLHHL--EDIE-AVLRNIYRLLKPGGIL 99 (99)
T ss_dssp STTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS----S-HH-HHHHHHTTT-TSS-EE
T ss_pred HHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhhhhHhhh--hhHH-HHHHHHHHHcCCCCCC
Confidence 34555555555433 33444333333 233699999985332222 4444 4455556999999975
No 96
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=93.29 E-value=0.25 Score=35.46 Aligned_cols=59 Identities=34% Similarity=0.385 Sum_probs=41.3
Q ss_pred cCCCCeEEEEecccccccC--CCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcc
Q 023569 12 NNLQDVVEVIEGSVEDIVL--PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPS 72 (280)
Q Consensus 12 Ngl~~~i~vi~~~~~~~~l--~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~ 72 (280)
++...+++++.++..+... +.++|+|++..+.... ......++....+.|+|+|.++-.
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 43 ALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cccccceEEEEcChhhhccccCCceEEEEEccceeeh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3344569999999998874 4789999997653322 344455555556788999988754
No 97
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=93.29 E-value=0.19 Score=42.70 Aligned_cols=67 Identities=12% Similarity=0.037 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccc-c-CC---CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDI-V-LP---EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~-~-l~---~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
++.|+++++.|+++++++++++++.+. . +. ..+|+|+..|.-..-..+.+++.+ +...+|+++|.++
T Consensus 85 ~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l--~~~~~l~~~~iiv 156 (189)
T TIGR00095 85 NQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELC--ENNWILEDTVLIV 156 (189)
T ss_pred HHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHH--HHCCCCCCCeEEE
Confidence 567899999999988899999999554 2 21 248999998864333333444433 3356889998765
No 98
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=93.19 E-value=0.099 Score=45.96 Aligned_cols=68 Identities=21% Similarity=0.327 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCC--ccHHHHHHHHhcccCCCeEEEcccce
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRE--SMFDSVICARDRWLKPTGVMYPSHAR 75 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E--~~l~~~~~a~~~~L~~~g~~iP~~a~ 75 (280)
+++.|+.-...||+. |......++++.-. +++|||+| |. . -| ..-..++.+..+++||||.++=+...
T Consensus 93 ~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~c--mE--V-lEHv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 93 PIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTC--ME--V-LEHVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred HHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEE--hh--H-HHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 356777777788876 67788888888765 89999999 21 1 12 22345777788999999998866555
No 99
>PRK07402 precorrin-6B methylase; Provisional
Probab=93.09 E-value=0.31 Score=41.30 Aligned_cols=62 Identities=26% Similarity=0.311 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccc--cCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDI--VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~--~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|+++++.+++.+ |+++.+++.+. .+....|.++.+. ...++.++....++|+|||.++
T Consensus 76 ~~~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li 139 (196)
T PRK07402 76 VVNLIRRNCDRFGVKN-VEVIEGSAPECLAQLAPAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLV 139 (196)
T ss_pred HHHHHHHHHHHhCCCC-eEEEECchHHHHhhCCCCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEE
Confidence 4678999999999965 99999988653 2333456665531 1234445555557799999765
No 100
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=93.09 E-value=0.15 Score=43.78 Aligned_cols=61 Identities=23% Similarity=0.365 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
.+..+++++.|+++++|+++++|.+++.....+|-||..++.... ..|+ +...++++||.+
T Consensus 138 ~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp~~~~---~fl~----~~~~~~~~~g~i 198 (200)
T PF02475_consen 138 VEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLPESSL---EFLD----AALSLLKEGGII 198 (200)
T ss_dssp HHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--TSSGG---GGHH----HHHHHEEEEEEE
T ss_pred HHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECChHHHH---HHHH----HHHHHhcCCcEE
Confidence 467899999999999999999999988667899999987654222 2333 334567887764
No 101
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=0.31 Score=42.07 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
+++.|+++++..|+.| |+|+++|-..=.-+ .++|.|+...- ...+-+.++ .-||+||+++
T Consensus 106 L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~aPyD~I~Vtaa-----a~~vP~~Ll----~QL~~gGrlv 166 (209)
T COG2518 106 LAEQARRNLETLGYEN-VTVRHGDGSKGWPEEAPYDRIIVTAA-----APEVPEALL----DQLKPGGRLV 166 (209)
T ss_pred HHHHHHHHHHHcCCCc-eEEEECCcccCCCCCCCcCEEEEeec-----cCCCCHHHH----HhcccCCEEE
Confidence 4688999999999988 99999986554333 78999988531 222223332 3599999763
No 102
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=93.01 E-value=0.1 Score=47.35 Aligned_cols=68 Identities=22% Similarity=0.335 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCC-CeEEEEeccccccc--C--CCcccEEEecCCCcccCCC----ccHHHHHHHHhcccCCCeEEE
Q 023569 2 SDHARTLVKANNLQ-DVVEVIEGSVEDIV--L--PEKVDVIISEWMGYFLLRE----SMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 2 a~~A~~~i~~Ngl~-~~i~vi~~~~~~~~--l--~~~~DvivsE~~g~~l~~E----~~l~~~~~a~~~~L~~~g~~i 70 (280)
.+.|+++++.||++ ++++++.+|+.+.- + .+++|+||..|.-.. -+. .-...+....-++|+|||.++
T Consensus 159 l~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~-k~~~~~~~~y~~L~~~a~~ll~~gG~l~ 235 (286)
T PF10672_consen 159 LEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFA-KSKFDLERDYKKLLRRAMKLLKPGGLLL 235 (286)
T ss_dssp HHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEE-SSTCEHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred HHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 47899999999997 78999999987641 2 369999999997322 221 122334444457899999854
No 103
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=92.96 E-value=0.28 Score=43.56 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCC
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 42 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~ 42 (280)
++.|+++++ ++...+|+++.++..+...+.++|+||+++.
T Consensus 145 l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 145 LAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFDLIVSNPP 184 (275)
T ss_pred HHHHHHHHH-hCCCCcEEEEEccccCcCCCCceeEEEECCC
Confidence 467777777 4556679999998754322378999999874
No 104
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=92.95 E-value=0.26 Score=45.36 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=36.4
Q ss_pred CCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 15 QDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 15 ~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
..++.++..+++++....++|+|+|. |...-...... ++....+.|||||.++
T Consensus 170 ~~~v~~~~~~ie~lp~~~~FD~V~s~--gvL~H~~dp~~-~L~el~r~LkpGG~Lv 222 (314)
T TIGR00452 170 DKRAILEPLGIEQLHELYAFDTVFSM--GVLYHRKSPLE-HLKQLKHQLVIKGELV 222 (314)
T ss_pred CCCeEEEECCHHHCCCCCCcCEEEEc--chhhccCCHHH-HHHHHHHhcCCCCEEE
Confidence 35688999888888765789999994 33322233333 4445568999999776
No 105
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=92.81 E-value=0.24 Score=47.57 Aligned_cols=74 Identities=14% Similarity=0.139 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHcCCCCeEEEEeccccccc--CCCcccEEEecCCC--cccCCCc-----------------cHHHHHHHH
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWMG--YFLLRES-----------------MFDSVICAR 59 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l~~~~DvivsE~~g--~~l~~E~-----------------~l~~~~~a~ 59 (280)
+++.++++++..|+.+ |+++.++..++. +++++|.|+++..- .+.+... ....++...
T Consensus 274 rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a 352 (431)
T PRK14903 274 KIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQA 352 (431)
T ss_pred HHHHHHHHHHHcCCCe-EEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3578899999999975 999999998875 45789999998753 2322210 112344455
Q ss_pred hcccCCCeEEEcccce
Q 023569 60 DRWLKPTGVMYPSHAR 75 (280)
Q Consensus 60 ~~~L~~~g~~iP~~a~ 75 (280)
.++|||||.++=+.++
T Consensus 353 ~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 353 WKLLEKGGILLYSTCT 368 (431)
T ss_pred HHhcCCCCEEEEEECC
Confidence 5899999987543333
No 106
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=92.69 E-value=0.12 Score=45.38 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=41.5
Q ss_pred eEEEEecccccc--cCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEc
Q 023569 17 VVEVIEGSVEDI--VLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 71 (280)
Q Consensus 17 ~i~vi~~~~~~~--~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP 71 (280)
.|++|.||+.++ .++ +.+|+||..+.-..+-+|-.-+.+...-.|.|||||.++=
T Consensus 186 ~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 186 AIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred ccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 589999999888 366 7899999999865555554434444445689999999873
No 107
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=92.62 E-value=0.23 Score=50.71 Aligned_cols=42 Identities=17% Similarity=0.220 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC---CcccEEEecCC
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP---EKVDVIISEWM 42 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~---~~~DvivsE~~ 42 (280)
+++.|+++++.+|++++|++.+++..++..+ +++|+||++|.
T Consensus 268 av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPP 312 (702)
T PRK11783 268 VIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPP 312 (702)
T ss_pred HHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCC
Confidence 4689999999999999999999999998765 46999999986
No 108
>PLN02672 methionine S-methyltransferase
Probab=92.50 E-value=0.3 Score=51.91 Aligned_cols=42 Identities=21% Similarity=0.108 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHcCCC---------------CeEEEEecccccccCC--CcccEEEecCC
Q 023569 1 MSDHARTLVKANNLQ---------------DVVEVIEGSVEDIVLP--EKVDVIISEWM 42 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~---------------~~i~vi~~~~~~~~l~--~~~DvivsE~~ 42 (280)
+++.|+++++.|+++ ++|+++++|..+...+ .++|+|||++.
T Consensus 154 Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP 212 (1082)
T PLN02672 154 AVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP 212 (1082)
T ss_pred HHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCC
Confidence 367899999998753 5799999998764322 37999999996
No 109
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=92.48 E-value=0.25 Score=41.82 Aligned_cols=69 Identities=12% Similarity=0.282 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccc-cCCCcccEEEecC-CCcc-cCCC---ccHHHHHHHHhcccCCCeEEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDI-VLPEKVDVIISEW-MGYF-LLRE---SMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~-~l~~~~DvivsE~-~g~~-l~~E---~~l~~~~~a~~~~L~~~g~~i 70 (280)
.+.|+.+.+++|++|.|++.+.++.+= .++.++|+|+--- +++. |..+ +-+..++...+++|+|||+++
T Consensus 104 V~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifv 178 (227)
T KOG1271|consen 104 VELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFV 178 (227)
T ss_pred HHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEE
Confidence 467999999999999999999888774 3668999998643 3333 2223 233444555679999999875
No 110
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=92.31 E-value=0.31 Score=41.70 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=37.4
Q ss_pred cCCCCeEEEEecccccccCCCcccEE-EecCCCcccCCCccHHHHHHHHhcccCCCeEEEc
Q 023569 12 NNLQDVVEVIEGSVEDIVLPEKVDVI-ISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 71 (280)
Q Consensus 12 Ngl~~~i~vi~~~~~~~~l~~~~Dvi-vsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP 71 (280)
.++++ |+++.+++.+...++++|+| +|| ++|++-....+..++..-...|+|||.++=
T Consensus 86 ~~~~~-V~~~~~dvp~~~P~~~FDLIV~SE-VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~ 144 (201)
T PF05401_consen 86 AGLPH-VEWIQADVPEFWPEGRFDLIVLSE-VLYYLDDAEDLRAALDRLVAALAPGGHLVF 144 (201)
T ss_dssp TT-SS-EEEEES-TTT---SS-EEEEEEES--GGGSSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CCCCC-eEEEECcCCCCCCCCCeeEEEEeh-HhHcCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 45655 99999999887766999965 566 677776655555555555578999998764
No 111
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=92.15 E-value=0.4 Score=44.26 Aligned_cols=59 Identities=19% Similarity=0.099 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
|++.|++.++.+|+++ |+++.++..+...+ .++|+|++.. + -+.+.+ ...+.|+|||++
T Consensus 117 ~l~~Ar~~l~~~g~~n-V~~i~gD~~~~~~~~~~fD~Ii~~~---g--~~~ip~----~~~~~LkpgG~L 176 (322)
T PRK13943 117 ICEIAKRNVRRLGIEN-VIFVCGDGYYGVPEFAPYDVIFVTV---G--VDEVPE----TWFTQLKEGGRV 176 (322)
T ss_pred HHHHHHHHHHHcCCCc-EEEEeCChhhcccccCCccEEEECC---c--hHHhHH----HHHHhcCCCCEE
Confidence 4678999999999865 89999987665333 5799999741 1 111222 223579999964
No 112
>PRK03612 spermidine synthase; Provisional
Probab=92.11 E-value=0.18 Score=49.68 Aligned_cols=73 Identities=25% Similarity=0.240 Sum_probs=45.5
Q ss_pred CHHHHHHHH-----HHcCCC-CeEEEEeccccccc--CCCcccEEEecCCCcccCCCccH--HHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLV-----KANNLQ-DVVEVIEGSVEDIV--LPEKVDVIISEWMGYFLLRESMF--DSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i-----~~Ngl~-~~i~vi~~~~~~~~--l~~~~DvivsE~~g~~l~~E~~l--~~~~~a~~~~L~~~g~~i 70 (280)
|++.|++.. ..+.++ .+++++.+|..+.- .++++|+|++++.+........+ ..+.....+.|||||+++
T Consensus 333 vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv 412 (521)
T PRK03612 333 MTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLV 412 (521)
T ss_pred HHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEE
Confidence 356666632 122354 58999999988752 45899999999765432221111 223334457899999887
Q ss_pred ccc
Q 023569 71 PSH 73 (280)
Q Consensus 71 P~~ 73 (280)
=+.
T Consensus 413 ~~~ 415 (521)
T PRK03612 413 VQS 415 (521)
T ss_pred Eec
Confidence 554
No 113
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=91.87 E-value=0.29 Score=47.30 Aligned_cols=61 Identities=21% Similarity=0.374 Sum_probs=42.3
Q ss_pred HHcCCCCeEEEEecccccc--cCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEc
Q 023569 10 KANNLQDVVEVIEGSVEDI--VLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 71 (280)
Q Consensus 10 ~~Ngl~~~i~vi~~~~~~~--~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP 71 (280)
+.|+...+++++.++..+. ++| +++|+|++.++-..+..+ .+..++....++|||||.++-
T Consensus 77 ~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~-~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 77 SINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDK-EVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred HHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHhCCHH-HHHHHHHHHHHhcCCCeEEEE
Confidence 3455556799999998753 455 689999998764444333 344455556689999998865
No 114
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=91.87 E-value=0.5 Score=44.73 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccc--cCC-CcccEEEecCCCcccCCCc---cHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIISEWMGYFLLRES---MFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~--~l~-~~~DvivsE~~g~~l~~E~---~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|.+.++.+|+++ |.++++++.++ .+| +.+|.|.....+.-.-... ..+.++....|.|+|||.+.
T Consensus 158 ~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~ 232 (390)
T PRK14121 158 SIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLE 232 (390)
T ss_pred HHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEE
Confidence 4677888888999988 99999999876 355 7899998764322110011 23556666778999999753
No 115
>PRK04266 fibrillarin; Provisional
Probab=91.72 E-value=0.41 Score=41.88 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=30.8
Q ss_pred eEEEEecccccc----cCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 17 VVEVIEGSVEDI----VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 17 ~i~vi~~~~~~~----~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
.|+++.++..+. .+++++|+|+++... .+ ....++....++|||||.++
T Consensus 121 nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~---p~--~~~~~L~~~~r~LKpGG~lv 173 (226)
T PRK04266 121 NIIPILADARKPERYAHVVEKVDVIYQDVAQ---PN--QAEIAIDNAEFFLKDGGYLL 173 (226)
T ss_pred CcEEEECCCCCcchhhhccccCCEEEECCCC---hh--HHHHHHHHHHHhcCCCcEEE
Confidence 478888888752 345789999987431 11 11223334457899999643
No 116
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=91.40 E-value=0.28 Score=42.14 Aligned_cols=52 Identities=25% Similarity=0.341 Sum_probs=37.9
Q ss_pred CeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 16 DVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 16 ~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
.+++++.++.++..++ +++|+|++..+-. +-.....++....++|+|||.++
T Consensus 80 ~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~---~~~~~~~~l~~~~~~L~~~G~l~ 132 (240)
T TIGR02072 80 ENVQFICGDAEKLPLEDSSFDLIVSNLALQ---WCDDLSQALSELARVLKPGGLLA 132 (240)
T ss_pred CCCeEEecchhhCCCCCCceeEEEEhhhhh---hccCHHHHHHHHHHHcCCCcEEE
Confidence 4688999999988765 7899999975322 11234455666678999999776
No 117
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=91.34 E-value=0.57 Score=44.89 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHcCCCCeEEEEeccccccc--C-CCcccEEEecCC--CcccCCC----------c-------cHHHHHHH
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIV--L-PEKVDVIISEWM--GYFLLRE----------S-------MFDSVICA 58 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l-~~~~DvivsE~~--g~~l~~E----------~-------~l~~~~~a 58 (280)
|++.|+++++.+|+. ++++.+|..++. + ++++|.|++++. |.+.+.. . ....++..
T Consensus 280 ~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~ 357 (427)
T PRK10901 280 RLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDA 357 (427)
T ss_pred HHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHH
Confidence 467889999999985 689999988764 2 367999999885 3222211 1 11245555
Q ss_pred HhcccCCCeEEE
Q 023569 59 RDRWLKPTGVMY 70 (280)
Q Consensus 59 ~~~~L~~~g~~i 70 (280)
..++|||||.++
T Consensus 358 a~~~LkpGG~lv 369 (427)
T PRK10901 358 LWPLLKPGGTLL 369 (427)
T ss_pred HHHhcCCCCEEE
Confidence 568999999986
No 118
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=91.30 E-value=0.54 Score=43.62 Aligned_cols=68 Identities=19% Similarity=0.315 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHcCCCCeEEEEec-ccccccCCCc-ccEEEecCC-Cccc--CC---CccHHHHHHHHhcccCCCeEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEG-SVEDIVLPEK-VDVIISEWM-GYFL--LR---ESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~-~~~~~~l~~~-~DvivsE~~-g~~l--~~---E~~l~~~~~a~~~~L~~~g~~ 69 (280)
|++-|+.|++.-|+++ ..++.. |+++++|+++ +|-|++++. |-.. -. +.++...+......||+||.+
T Consensus 231 mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~ 306 (347)
T COG1041 231 MVRGAKINLEYYGIED-YPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRI 306 (347)
T ss_pred HHhhhhhhhhhhCcCc-eeEEEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEE
Confidence 6788999999999887 666776 9999999965 999999995 3222 11 233444455556789998843
No 119
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=91.22 E-value=0.63 Score=39.45 Aligned_cols=66 Identities=20% Similarity=0.306 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc--CCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccceE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 76 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a~l 76 (280)
++..+++.++.|+++ ++|++++.-+.- +| ++|.|+=. +-+-++.++.+.-..|||||+++=+.+++
T Consensus 71 ~~~~~~N~~~fg~~n-~~vv~g~Ap~~L~~~~-~~daiFIG-------Gg~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 71 LELIERNAARFGVDN-LEVVEGDAPEALPDLP-SPDAIFIG-------GGGNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred HHHHHHHHHHhCCCc-EEEEeccchHhhcCCC-CCCEEEEC-------CCCCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 466788888889655 999999987763 44 78988752 22556666666677899999988655543
No 120
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=90.96 E-value=0.55 Score=40.69 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc--CCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
++.|++.+..+++ .++++..+..++. .++++|+|++..+ +..-.-...++....++|+|||.++
T Consensus 83 ~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 83 IEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEM---LEHVPDPASFVRACAKLVKPGGLVF 148 (233)
T ss_pred HHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhH---hhccCCHHHHHHHHHHHcCCCcEEE
Confidence 4566776666666 4788888887764 3379999988432 1111223455566678999999876
No 121
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=90.92 E-value=0.4 Score=44.57 Aligned_cols=52 Identities=25% Similarity=0.236 Sum_probs=35.1
Q ss_pred CeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 16 DVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 16 ~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
.+|+++.++.+++.++ +.+|+|++... .-.... .+.++....+.|||||.++
T Consensus 160 ~~i~~i~gD~e~lp~~~~sFDvVIs~~~--L~~~~d-~~~~L~e~~rvLkPGG~Lv 212 (340)
T PLN02490 160 KECKIIEGDAEDLPFPTDYADRYVSAGS--IEYWPD-PQRGIKEAYRVLKIGGKAC 212 (340)
T ss_pred cCCeEEeccHHhCCCCCCceeEEEEcCh--hhhCCC-HHHHHHHHHHhcCCCcEEE
Confidence 3488999999998876 68999998532 111112 1234445568999999864
No 122
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=90.90 E-value=0.59 Score=41.85 Aligned_cols=71 Identities=11% Similarity=0.073 Sum_probs=44.2
Q ss_pred HHHHHHHHHHc-C-CC-CeEEEEecccccc--cCCCcccEEEecCCCcccCCCcc-HHHHHHHHhcccCCCeEEEcc
Q 023569 2 SDHARTLVKAN-N-LQ-DVVEVIEGSVEDI--VLPEKVDVIISEWMGYFLLRESM-FDSVICARDRWLKPTGVMYPS 72 (280)
Q Consensus 2 a~~A~~~i~~N-g-l~-~~i~vi~~~~~~~--~l~~~~DvivsE~~g~~l~~E~~-l~~~~~a~~~~L~~~g~~iP~ 72 (280)
++.|++.+... + +. .+++++.++..+. ..++++|+||+.........+.. ...+.....+.|+|||+++=.
T Consensus 109 i~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 109 IELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred HHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 46677766432 2 32 5788888776553 23579999999876433222332 233444455889999997754
No 123
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=90.78 E-value=0.46 Score=40.95 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=34.3
Q ss_pred EEEEeccccccc--------CC-CcccEEEecCCCcccCCC--------ccHHHHHHHHhcccCCCeEE
Q 023569 18 VEVIEGSVEDIV--------LP-EKVDVIISEWMGYFLLRE--------SMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 18 i~vi~~~~~~~~--------l~-~~~DvivsE~~g~~l~~E--------~~l~~~~~a~~~~L~~~g~~ 69 (280)
|+++++++++.. ++ .++|+|+|++.-...... ..+..++....++|||||.+
T Consensus 93 v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~ 161 (209)
T PRK11188 93 VDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSF 161 (209)
T ss_pred cEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 889999998863 33 689999998632221111 01234555567899999976
No 124
>PRK08317 hypothetical protein; Provisional
Probab=90.77 E-value=0.7 Score=39.52 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=36.9
Q ss_pred CCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 13 NLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 13 gl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
+...+++++.++..+++++ .++|+|++..+-..+ .-...++....+.|||||.++
T Consensus 66 ~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~ 121 (241)
T PRK08317 66 GLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHL---EDPARALAEIARVLRPGGRVV 121 (241)
T ss_pred CCCCceEEEecccccCCCCCCCceEEEEechhhcc---CCHHHHHHHHHHHhcCCcEEE
Confidence 3445699999998887766 789999986431111 113334445568899999775
No 125
>PRK01581 speE spermidine synthase; Validated
Probab=90.28 E-value=0.52 Score=44.21 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=38.1
Q ss_pred CCeEEEEeccccccc--CCCcccEEEecCCCcccC-CCccH-HHHHHHHhcccCCCeEEEcc
Q 023569 15 QDVVEVIEGSVEDIV--LPEKVDVIISEWMGYFLL-RESMF-DSVICARDRWLKPTGVMYPS 72 (280)
Q Consensus 15 ~~~i~vi~~~~~~~~--l~~~~DvivsE~~g~~l~-~E~~l-~~~~~a~~~~L~~~g~~iP~ 72 (280)
..+++++.+|..+.- .++++|+|+..+.+.... ..... ..+.....+.|+|||+++=+
T Consensus 206 DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 206 DNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred CCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 479999999988752 347899999997653211 11111 33444556789999987433
No 126
>PHA03411 putative methyltransferase; Provisional
Probab=90.20 E-value=0.74 Score=41.55 Aligned_cols=27 Identities=33% Similarity=0.186 Sum_probs=22.8
Q ss_pred eEEEEecccccccCCCcccEEEecCCC
Q 023569 17 VVEVIEGSVEDIVLPEKVDVIISEWMG 43 (280)
Q Consensus 17 ~i~vi~~~~~~~~l~~~~DvivsE~~g 43 (280)
++++++++..+...+.++|+||+++.-
T Consensus 110 ~v~~v~~D~~e~~~~~kFDlIIsNPPF 136 (279)
T PHA03411 110 EAEWITSDVFEFESNEKFDVVISNPPF 136 (279)
T ss_pred CCEEEECchhhhcccCCCcEEEEcCCc
Confidence 488999999887666889999999853
No 127
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=90.00 E-value=0.81 Score=41.92 Aligned_cols=41 Identities=12% Similarity=0.004 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccC--CCcccEEEecCC
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVL--PEKVDVIISEWM 42 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l--~~~~DvivsE~~ 42 (280)
|++.|+++++.||++ +|+++.+++.++.. ..++|+||..+.
T Consensus 207 av~~A~~n~~~~~l~-~v~~~~~D~~~~~~~~~~~~D~Vv~dPP 249 (315)
T PRK03522 207 AIACAKQSAAELGLT-NVQFQALDSTQFATAQGEVPDLVLVNPP 249 (315)
T ss_pred HHHHHHHHHHHcCCC-ceEEEEcCHHHHHHhcCCCCeEEEECCC
Confidence 467899999999994 59999999988642 357999999987
No 128
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=89.87 E-value=0.66 Score=43.10 Aligned_cols=61 Identities=18% Similarity=0.216 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
.++.+++++.|+++++|+.++||++++... ..+|-|+...+. .....++. +-..+++||.+
T Consensus 224 ~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~---~a~~fl~~----A~~~~k~~g~i 285 (341)
T COG2520 224 VEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK---SAHEFLPL----ALELLKDGGII 285 (341)
T ss_pred HHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC---cchhhHHH----HHHHhhcCcEE
Confidence 467899999999999999999999998755 789999876543 22333332 33567777765
No 129
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=89.75 E-value=0.74 Score=42.48 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=33.3
Q ss_pred HHHHHHHHHHc-CCCCeEEEEe-ccccccc----C-CCcccEEEecCCCc
Q 023569 2 SDHARTLVKAN-NLQDVVEVIE-GSVEDIV----L-PEKVDVIISEWMGY 44 (280)
Q Consensus 2 a~~A~~~i~~N-gl~~~i~vi~-~~~~~~~----l-~~~~DvivsE~~g~ 44 (280)
++.|+++++.| +++++|+++. .+..++. . .+++|+|||+|.-+
T Consensus 151 l~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 151 LASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFH 200 (321)
T ss_pred HHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCc
Confidence 68899999999 8999999974 3444442 1 26899999999743
No 130
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=89.67 E-value=0.27 Score=42.57 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
+++.|+++++..|+.+ |+++.+|...-.-+ .++|.|+...- . +.+-..+ -..||+||+++
T Consensus 109 l~~~A~~~l~~~~~~n-v~~~~gdg~~g~~~~apfD~I~v~~a----~-~~ip~~l----~~qL~~gGrLV 169 (209)
T PF01135_consen 109 LAERARRNLARLGIDN-VEVVVGDGSEGWPEEAPFDRIIVTAA----V-PEIPEAL----LEQLKPGGRLV 169 (209)
T ss_dssp HHHHHHHHHHHHTTHS-EEEEES-GGGTTGGG-SEEEEEESSB----B-SS--HHH----HHTEEEEEEEE
T ss_pred HHHHHHHHHHHhccCc-eeEEEcchhhccccCCCcCEEEEeec----c-chHHHHH----HHhcCCCcEEE
Confidence 3688999999999986 99999986553222 68999998631 1 2322222 24699999753
No 131
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=89.62 E-value=0.33 Score=43.00 Aligned_cols=71 Identities=25% Similarity=0.222 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcC--C-CCeEEEEecccccc--cCCC-cccEEEecCCCcccCCCcc-HHHHHHHHhcccCCCeEEEcc
Q 023569 2 SDHARTLVKANN--L-QDVVEVIEGSVEDI--VLPE-KVDVIISEWMGYFLLRESM-FDSVICARDRWLKPTGVMYPS 72 (280)
Q Consensus 2 a~~A~~~i~~Ng--l-~~~i~vi~~~~~~~--~l~~-~~DvivsE~~g~~l~~E~~-l~~~~~a~~~~L~~~g~~iP~ 72 (280)
.+.|++.+.... + +.|++++.+|.... ..++ ++|+||.+..+.....++. -..+.....+.|+|||+++=+
T Consensus 113 v~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 113 VELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp HHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 467777765432 3 36899999998776 3445 9999999998754444442 134445566889999987533
No 132
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=89.48 E-value=0.65 Score=42.07 Aligned_cols=65 Identities=23% Similarity=0.259 Sum_probs=48.0
Q ss_pred CeEEEEeccccccc--CCCcccEEEecCCCcccCCCccH-HHHHHHHhcccCCCeEEEcccceEEEEE
Q 023569 16 DVVEVIEGSVEDIV--LPEKVDVIISEWMGYFLLRESMF-DSVICARDRWLKPTGVMYPSHARMWVAP 80 (280)
Q Consensus 16 ~~i~vi~~~~~~~~--l~~~~DvivsE~~g~~l~~E~~l-~~~~~a~~~~L~~~g~~iP~~a~ly~~~ 80 (280)
.|++++-+|..+.- .++++|+||....+.....++.. +.+....++.|+++|+++=++...+...
T Consensus 130 pRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 130 PRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred CceEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 57777777766652 45689999999887666666654 4455567789999999998877766665
No 133
>PRK06922 hypothetical protein; Provisional
Probab=89.30 E-value=0.57 Score=47.17 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHcCCCCeEEEEeccccccc--CC-CcccEEEecCCCcc----cC------CCccHHHHHHHHhcccCCCe
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIV--LP-EKVDVIISEWMGYF----LL------RESMFDSVICARDRWLKPTG 67 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l~-~~~DvivsE~~g~~----l~------~E~~l~~~~~a~~~~L~~~g 67 (280)
|++.|++....++ .++.++.++..++. ++ +++|+|++...-.- +. ....+..++....+.|||||
T Consensus 454 MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGG 531 (677)
T PRK06922 454 VIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGG 531 (677)
T ss_pred HHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCc
Confidence 4566666655444 35889999988875 44 78999998643211 11 11223344455568999999
Q ss_pred EEEc
Q 023569 68 VMYP 71 (280)
Q Consensus 68 ~~iP 71 (280)
.++=
T Consensus 532 rLII 535 (677)
T PRK06922 532 RIII 535 (677)
T ss_pred EEEE
Confidence 8743
No 134
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=89.05 E-value=1 Score=38.09 Aligned_cols=63 Identities=25% Similarity=0.383 Sum_probs=45.3
Q ss_pred HHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccce
Q 023569 5 ARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 75 (280)
Q Consensus 5 A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a~ 75 (280)
-+.+++.-||+| |+++++++++...++++|+|+|=.++ -++.+..-..++|++||.++-.++.
T Consensus 88 L~~~~~~L~L~n-v~v~~~R~E~~~~~~~fd~v~aRAv~-------~l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 88 LKEVVRELGLSN-VEVINGRAEEPEYRESFDVVTARAVA-------PLDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp HHHHHHHHT-SS-EEEEES-HHHTTTTT-EEEEEEESSS-------SHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred HHHHHHHhCCCC-EEEEEeeecccccCCCccEEEeehhc-------CHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 456677789987 99999999995556899999998764 2344444456799999998876664
No 135
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=89.03 E-value=0.85 Score=40.17 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=34.1
Q ss_pred eEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEc
Q 023569 17 VVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 71 (280)
Q Consensus 17 ~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP 71 (280)
+++++.++..++..+.++|+|++...-..+.. ...++....+.|||||.++=
T Consensus 77 ~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~d---~~~~l~~~~~~LkpgG~~~~ 128 (258)
T PRK01683 77 DCQFVEADIASWQPPQALDLIFANASLQWLPD---HLELFPRLVSLLAPGGVLAV 128 (258)
T ss_pred CCeEEECchhccCCCCCccEEEEccChhhCCC---HHHHHHHHHHhcCCCcEEEE
Confidence 47889999887765579999999753222211 22333344578999997643
No 136
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=88.95 E-value=0.82 Score=43.24 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccC-CCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVL-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l-~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
++.|+++++.||+++ ++++++|..++-- ..++|+|+.+++|+ ....++. .-+-++++|.+.
T Consensus 94 v~~a~~N~~~N~~~~-~~v~~~Da~~~l~~~~~fD~V~lDP~Gs---~~~~l~~----al~~~~~~gily 155 (382)
T PRK04338 94 VELIKKNLELNGLEN-EKVFNKDANALLHEERKFDVVDIDPFGS---PAPFLDS----AIRSVKRGGLLC 155 (382)
T ss_pred HHHHHHHHHHhCCCc-eEEEhhhHHHHHhhcCCCCEEEECCCCC---cHHHHHH----HHHHhcCCCEEE
Confidence 578999999999986 6799999877532 46799999999743 1223332 223467887654
No 137
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=88.92 E-value=0.97 Score=38.71 Aligned_cols=65 Identities=26% Similarity=0.284 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCC--CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~--~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
++.|++.+..++.. +++++.++..++..+ .++|+|++.-+ +-.-.-...++....+.|+|||.++
T Consensus 80 ~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~~gG~l~ 146 (224)
T TIGR01983 80 IEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEV---LEHVPDPQAFIRACAQLLKPGGILF 146 (224)
T ss_pred HHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehhH---HHhCCCHHHHHHHHHHhcCCCcEEE
Confidence 46677777777764 488888888877543 78999988431 1111233445555667899999765
No 138
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=88.72 E-value=1.3 Score=40.21 Aligned_cols=67 Identities=21% Similarity=0.342 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc----CCCcccEEE-ecCCCcccCCCc-cHHHHHHHHhcccCCCeEEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV----LPEKVDVII-SEWMGYFLLRES-MFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~----l~~~~Dviv-sE~~g~~l~~E~-~l~~~~~a~~~~L~~~g~~i 70 (280)
++..+++++.+||++.+++.++|..+-. +..+++++| |=+.+ ++.++ ++...+.--...+.|||.+|
T Consensus 174 v~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~E--lF~Dn~lv~~sl~gl~~al~pgG~lI 246 (311)
T PF12147_consen 174 VEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYE--LFPDNDLVRRSLAGLARALEPGGYLI 246 (311)
T ss_pred HHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchh--hCCcHHHHHHHHHHHHHHhCCCcEEE
Confidence 4678999999999998899999988874 334567554 43333 33332 33333334456789999876
No 139
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=88.72 E-value=0.53 Score=41.36 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=35.0
Q ss_pred EEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 18 VEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 18 i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
+.++.++.++++++ +++|+|+|... +-+-.-+..++....+.|||||.++
T Consensus 87 ~~~~~~d~~~~~~~~~~fD~V~s~~~---l~~~~d~~~~l~~~~~~Lk~gG~l~ 137 (251)
T PRK10258 87 DHYLAGDIESLPLATATFDLAWSNLA---VQWCGNLSTALRELYRVVRPGGVVA 137 (251)
T ss_pred CCEEEcCcccCcCCCCcEEEEEECch---hhhcCCHHHHHHHHHHHcCCCeEEE
Confidence 46788899888777 68999999642 2222234445555568999999776
No 140
>PLN02823 spermine synthase
Probab=88.33 E-value=0.86 Score=42.34 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHcC--C-CCeEEEEeccccccc--CCCcccEEEecCCCcc--cCCCccH-HHHHH-HHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANN--L-QDVVEVIEGSVEDIV--LPEKVDVIISEWMGYF--LLRESMF-DSVIC-ARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ng--l-~~~i~vi~~~~~~~~--l~~~~DvivsE~~g~~--l~~E~~l-~~~~~-a~~~~L~~~g~~i 70 (280)
+++.|++.+..++ + +.+++++.+|..+.- .++++|+|+.+..+.. ..-.... ..+.. ...+.|+|||+++
T Consensus 139 vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv 217 (336)
T PLN02823 139 VVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFV 217 (336)
T ss_pred HHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEE
Confidence 3567887775442 4 468999999887752 3478999999975421 1111111 12222 3457899999875
No 141
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=88.01 E-value=0.78 Score=40.48 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=32.9
Q ss_pred EEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 18 VEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 18 i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
++++.++.+++....++|+|+|..+-..+. . ...++....+.|||||.++
T Consensus 74 ~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~--d-~~~~l~~~~~~LkpgG~l~ 123 (255)
T PRK14103 74 VDARTGDVRDWKPKPDTDVVVSNAALQWVP--E-HADLLVRWVDELAPGSWIA 123 (255)
T ss_pred CcEEEcChhhCCCCCCceEEEEehhhhhCC--C-HHHHHHHHHHhCCCCcEEE
Confidence 788999988775347899999965422222 1 2333334457899999764
No 142
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=87.70 E-value=1.7 Score=36.96 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCCCeEEEEecccccc--cCCC--cccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccceE
Q 023569 4 HARTLVKANNLQDVVEVIEGSVEDI--VLPE--KVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARM 76 (280)
Q Consensus 4 ~A~~~i~~Ngl~~~i~vi~~~~~~~--~l~~--~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a~l 76 (280)
..+++++.-++..+.+++..+.... .++. ++|+|...|.-.-.+.+..+..+..+...||+|+|.++=+...-
T Consensus 81 ~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 81 ILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 4555666667788999999998844 3444 49999999975422222222222222457999999876544443
No 143
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=87.52 E-value=0.16 Score=38.36 Aligned_cols=63 Identities=30% Similarity=0.425 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCCCeEEEEecccccc--cCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 4 HARTLVKANNLQDVVEVIEGSVEDI--VLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 4 ~A~~~i~~Ngl~~~i~vi~~~~~~~--~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
.++++++..+++++++++++++.+. .++ +++|+++-.- .-.++..+..+..+. +.|+|||+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg---~H~~~~~~~dl~~~~-~~l~~ggviv 102 (106)
T PF13578_consen 37 QAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG---DHSYEAVLRDLENAL-PRLAPGGVIV 102 (106)
T ss_dssp --------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES------HHHHHHHHHHHG-GGEEEEEEEE
T ss_pred ccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC---CCCHHHHHHHHHHHH-HHcCCCeEEE
Confidence 5677788789998999999999887 344 7899998753 223466666665554 6789999876
No 144
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=87.26 E-value=1.2 Score=39.64 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc----CCCcccEEEecCCCcccCCCccHHHHHHHHhccc-CCCeEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV----LPEKVDVIISEWMGYFLLRESMFDSVICARDRWL-KPTGVM 69 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~----l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L-~~~g~~ 69 (280)
++.|+++++.+|+.+.|++.++|+.+-- +...+|.|+-.+.. ++ ..++.+ .+.| |+||++
T Consensus 78 ~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~---Pw-~~i~~~----~~~L~~~gG~i 142 (247)
T PF08704_consen 78 AEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAVFLDLPD---PW-EAIPHA----KRALKKPGGRI 142 (247)
T ss_dssp HHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEEEEESSS---GG-GGHHHH----HHHE-EEEEEE
T ss_pred HHHHHHHHHHcCCCCCceeEecceecccccccccCcccEEEEeCCC---HH-HHHHHH----HHHHhcCCceE
Confidence 6889999999999999999999996432 33679999988753 12 234432 2457 788864
No 145
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=87.18 E-value=0.58 Score=40.48 Aligned_cols=54 Identities=30% Similarity=0.375 Sum_probs=34.5
Q ss_pred EEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccceEEEEEeecC
Q 023569 20 VIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSG 84 (280)
Q Consensus 20 vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a~ly~~~v~~~ 84 (280)
|+.+|+..++|+ +.+||+|.=+ .|.+.+....+..|. |.|||||. ++++=|.++
T Consensus 108 Vtacdia~vPL~~~svDv~VfcL---SLMGTn~~~fi~EA~-RvLK~~G~-------L~IAEV~SR 162 (219)
T PF05148_consen 108 VTACDIANVPLEDESVDVAVFCL---SLMGTNWPDFIREAN-RVLKPGGI-------LKIAEVKSR 162 (219)
T ss_dssp EEES-TTS-S--TT-EEEEEEES------SS-HHHHHHHHH-HHEEEEEE-------EEEEEEGGG
T ss_pred EEEecCccCcCCCCceeEEEEEh---hhhCCCcHHHHHHHH-heeccCcE-------EEEEEeccc
Confidence 666888888888 8999999843 255667777666664 89999975 577878775
No 146
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=86.84 E-value=0.57 Score=39.60 Aligned_cols=67 Identities=21% Similarity=0.267 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc--C---CCcccEEEecCCCcccCC-CccHHHHHHHHhcccCCCeEEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV--L---PEKVDVIISEWMGYFLLR-ESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l---~~~~DvivsE~~g~~l~~-E~~l~~~~~a~~~~L~~~g~~i 70 (280)
++..+++++.-+++++++++.+++...- + .+++|+|...|.-..... +.+++.+. ...+|+++|.++
T Consensus 78 ~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~--~~~~l~~~~~ii 150 (183)
T PF03602_consen 78 IKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLA--ENNLLNEDGLII 150 (183)
T ss_dssp HHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHH--HTTSEEEEEEEE
T ss_pred HHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHH--HCCCCCCCEEEE
Confidence 3566777777799999999999865442 2 489999999997433332 44444442 357999999775
No 147
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=86.65 E-value=1.1 Score=40.80 Aligned_cols=43 Identities=30% Similarity=0.373 Sum_probs=26.7
Q ss_pred HHHHHHHHHHc-CCCCeEEEEeccccc-cc----CC-CcccEEEecCCCc
Q 023569 2 SDHARTLVKAN-NLQDVVEVIEGSVED-IV----LP-EKVDVIISEWMGY 44 (280)
Q Consensus 2 a~~A~~~i~~N-gl~~~i~vi~~~~~~-~~----l~-~~~DvivsE~~g~ 44 (280)
++.|+++|+.| +|+++|+++.....+ +- .+ +++|..+|++.-+
T Consensus 139 l~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 139 LESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFY 188 (299)
T ss_dssp HHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----
T ss_pred HHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEecCCccc
Confidence 47899999999 999999999875443 21 12 7899999999643
No 148
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=85.38 E-value=1.1 Score=40.20 Aligned_cols=55 Identities=31% Similarity=0.480 Sum_probs=42.2
Q ss_pred EEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccceEEEEEeecC
Q 023569 19 EVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAPIRSG 84 (280)
Q Consensus 19 ~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a~ly~~~v~~~ 84 (280)
.|+.+|+++++|+ +.+||+|.=+ .|.+++..+-+..| .|.|++||. +|++-|.+.
T Consensus 213 ~V~~cDm~~vPl~d~svDvaV~CL---SLMgtn~~df~kEa-~RiLk~gG~-------l~IAEv~SR 268 (325)
T KOG3045|consen 213 RVIACDMRNVPLEDESVDVAVFCL---SLMGTNLADFIKEA-NRILKPGGL-------LYIAEVKSR 268 (325)
T ss_pred ceeeccccCCcCccCcccEEEeeH---hhhcccHHHHHHHH-HHHhccCce-------EEEEehhhh
Confidence 4677888888888 8999999732 25667777766655 599999985 689988876
No 149
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=85.37 E-value=2.4 Score=38.22 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCCCeEEEEecccccc-----cCC-CcccEEEecCC
Q 023569 3 DHARTLVKANNLQDVVEVIEGSVEDI-----VLP-EKVDVIISEWM 42 (280)
Q Consensus 3 ~~A~~~i~~Ngl~~~i~vi~~~~~~~-----~l~-~~~DvivsE~~ 42 (280)
..|.++++.+++.++|.|++-.++.- +++ .+.|++||++.
T Consensus 186 ~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPP 231 (328)
T KOG2904|consen 186 KLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPP 231 (328)
T ss_pred HHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCC
Confidence 56888899999999999997644332 233 79999999996
No 150
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=85.28 E-value=2.1 Score=40.89 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHcCCCCeEEEEeccccccc--C---CCcccEEEecCCC
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIV--L---PEKVDVIISEWMG 43 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l---~~~~DvivsE~~g 43 (280)
|++.|+++++.||+++ |+++.+++.+.- + ..++|+|+..+.-
T Consensus 326 av~~a~~n~~~~~~~n-v~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr 372 (431)
T TIGR00479 326 SVEKAQQNAELNGIAN-VEFLAGTLETVLPKQPWAGQIPDVLLLDPPR 372 (431)
T ss_pred HHHHHHHHHHHhCCCc-eEEEeCCHHHHHHHHHhcCCCCCEEEECcCC
Confidence 4678999999999965 999999987741 2 2468999998874
No 151
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=85.16 E-value=1.8 Score=37.15 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|++.|++.+..++..+++++..++..++. +++|+|++--.-.. +.+.-+..++....+.+++++.+.
T Consensus 89 ~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~l~~-~~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 89 MVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDVLIH-YPASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred HHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhHHHh-CCHHHHHHHHHHHHHHhCCCEEEE
Confidence 46788888888888778999999987765 78999988321111 112223333333445677665443
No 152
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=85.08 E-value=1.9 Score=40.81 Aligned_cols=63 Identities=22% Similarity=0.212 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEc
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 71 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP 71 (280)
++.|++.++ ++ .|++..++..++ ++++|.|+|-.+-. ..+...++.++....++|||||.++=
T Consensus 203 l~~A~~~~~--~l--~v~~~~~D~~~l--~~~fD~Ivs~~~~e-hvg~~~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 203 QKLAQERCA--GL--PVEIRLQDYRDL--NGQFDRIVSVGMFE-HVGPKNYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred HHHHHHHhc--cC--eEEEEECchhhc--CCCCCEEEEeCchh-hCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 455666552 33 378888777665 57899999854311 11222344555566789999998763
No 153
>PTZ00146 fibrillarin; Provisional
Probab=84.91 E-value=2.6 Score=38.41 Aligned_cols=59 Identities=19% Similarity=0.097 Sum_probs=34.3
Q ss_pred HHHHHcCCCCeEEEEecccccc---c-CCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 7 TLVKANNLQDVVEVIEGSVEDI---V-LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 7 ~~i~~Ngl~~~i~vi~~~~~~~---~-l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
.+++.+.-...|..+.+|.+.- . +.+.+|+|++... .. .....+.....++|||||.++
T Consensus 172 dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva---~p--dq~~il~~na~r~LKpGG~~v 234 (293)
T PTZ00146 172 DLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVA---QP--DQARIVALNAQYFLKNGGHFI 234 (293)
T ss_pred HHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCC---Cc--chHHHHHHHHHHhccCCCEEE
Confidence 3444433323477788787542 1 2368999999863 11 122233334568999999754
No 154
>PRK11524 putative methyltransferase; Provisional
Probab=84.59 E-value=0.9 Score=41.01 Aligned_cols=54 Identities=30% Similarity=0.312 Sum_probs=37.2
Q ss_pred eEEEEecccccc--cCC-CcccEEEecCCCcc-----cCCC--------ccHHHHHHHHhcccCCCeEEE
Q 023569 17 VVEVIEGSVEDI--VLP-EKVDVIISEWMGYF-----LLRE--------SMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 17 ~i~vi~~~~~~~--~l~-~~~DvivsE~~g~~-----l~~E--------~~l~~~~~a~~~~L~~~g~~i 70 (280)
..+++++|+.++ .+| +++|+||+.+.-.. -..+ ..+..++.+..++|||||.++
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~ 77 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMY 77 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 357999999986 476 79999999986211 1111 223455566678999999765
No 155
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=84.58 E-value=2.1 Score=40.25 Aligned_cols=41 Identities=5% Similarity=-0.052 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc--CCCcccEEEecCCC
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWMG 43 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l~~~~DvivsE~~g 43 (280)
++.|+++++.||++ +++++.+++.+.. ...++|+||.+|.-
T Consensus 268 v~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 268 IACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred HHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 57899999999996 5999999998753 22469999999984
No 156
>PRK13699 putative methylase; Provisional
Probab=84.26 E-value=1 Score=39.43 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=36.3
Q ss_pred EEEEecccccc--cCC-CcccEEEecCCCccc---------CCC---ccHHHHHHHHhcccCCCeEEE
Q 023569 18 VEVIEGSVEDI--VLP-EKVDVIISEWMGYFL---------LRE---SMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 18 i~vi~~~~~~~--~l~-~~~DvivsE~~g~~l---------~~E---~~l~~~~~a~~~~L~~~g~~i 70 (280)
++++++|+-++ .+| +.+|+||+.|.-... .++ ..+..++....|.|||||.++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~ 69 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMV 69 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEE
Confidence 46889998887 688 899999999863210 011 223344555668999998764
No 157
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=82.22 E-value=0.9 Score=40.62 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=37.0
Q ss_pred CCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEc
Q 023569 15 QDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 71 (280)
Q Consensus 15 ~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP 71 (280)
.++|++..+++.+...| +++|+|+|-.+-..+ .......++..-.+.|+|||.++=
T Consensus 184 r~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 184 KERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred hCcCEEeeccCCCCCCccCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEEE
Confidence 35789999999887765 789999994321111 222233444445678999998653
No 158
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=82.06 E-value=3.5 Score=40.14 Aligned_cols=73 Identities=19% Similarity=0.152 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc--CCCcccEEEecCC--CcccCCC--cc---------------HHHHHHHHh
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWM--GYFLLRE--SM---------------FDSVICARD 60 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l~~~~DvivsE~~--g~~l~~E--~~---------------l~~~~~a~~ 60 (280)
++..+++++.-|+.+ |.+.+.+.+.+. +++.+|.|+.... |.+.+.- .+ ...++.+..
T Consensus 151 ~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~ 229 (470)
T PRK11933 151 VKVLHANISRCGVSN-VALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAF 229 (470)
T ss_pred HHHHHHHHHHcCCCe-EEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 356678888889977 889998888763 5688999998775 3333331 01 123455556
Q ss_pred cccCCCeEEEcccce
Q 023569 61 RWLKPTGVMYPSHAR 75 (280)
Q Consensus 61 ~~L~~~g~~iP~~a~ 75 (280)
++|||||.++=+.++
T Consensus 230 ~~LkpGG~LVYSTCT 244 (470)
T PRK11933 230 HALKPGGTLVYSTCT 244 (470)
T ss_pred HHcCCCcEEEEECCC
Confidence 789999988755555
No 159
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=81.63 E-value=4.2 Score=39.15 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHcCCCCeEEEEeccccccc----CC-CcccEEEecCCCcc
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIV----LP-EKVDVIISEWMGYF 45 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~----l~-~~~DvivsE~~g~~ 45 (280)
|++.|+++++.||+++ ++++.+++.+.. ++ .++|+|++++.-.+
T Consensus 331 al~~A~~n~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g 379 (443)
T PRK13168 331 MVERARENARRNGLDN-VTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG 379 (443)
T ss_pred HHHHHHHHHHHcCCCc-eEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC
Confidence 5788999999999976 999999987642 22 57999999987443
No 160
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=78.65 E-value=3.1 Score=37.08 Aligned_cols=44 Identities=20% Similarity=0.316 Sum_probs=31.8
Q ss_pred eEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 17 VVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 17 ~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
.++++.+++.+++++ +.+|+|++-. ....+.. -.|.|||||.++
T Consensus 134 ~~~~~~~d~~~lp~~~~sfD~I~~~~------~~~~~~e----~~rvLkpgG~li 178 (272)
T PRK11088 134 QVTFCVASSHRLPFADQSLDAIIRIY------APCKAEE----LARVVKPGGIVI 178 (272)
T ss_pred CCeEEEeecccCCCcCCceeEEEEec------CCCCHHH----HHhhccCCCEEE
Confidence 378888999888776 6899999832 1233332 357899999886
No 161
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=76.54 E-value=3.9 Score=33.63 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCCC-cccEEEecCC
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLPE-KVDVIISEWM 42 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~-~~DvivsE~~ 42 (280)
++.+++.+.. .++++++++|..++.++. ++|.|++++.
T Consensus 48 ~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~d~vi~n~P 86 (169)
T smart00650 48 APRLREKFAA---ADNLTVIHGDALKFDLPKLQPYKVVGNLP 86 (169)
T ss_pred HHHHHHHhcc---CCCEEEEECchhcCCccccCCCEEEECCC
Confidence 4455555432 346999999999988774 5999999875
No 162
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=76.42 E-value=7.1 Score=33.36 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEec
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 40 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE 40 (280)
|++.|++....+++.++|+++.++... ..+.+|+|++-
T Consensus 97 ~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~ 134 (230)
T PRK07580 97 MVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCL 134 (230)
T ss_pred HHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEc
Confidence 467889988888887889999988432 23689999973
No 163
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=76.38 E-value=4.9 Score=33.42 Aligned_cols=64 Identities=30% Similarity=0.457 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcC--CCCeEEEEeccccc-c---cC-CCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeE
Q 023569 2 SDHARTLVKANN--LQDVVEVIEGSVED-I---VL-PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGV 68 (280)
Q Consensus 2 a~~A~~~i~~Ng--l~~~i~vi~~~~~~-~---~l-~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~ 68 (280)
.+..+.+++.|+ ...+|++..-+=.+ + .+ +.++|+|++ ...+..+...+.+...-+++|+++|.
T Consensus 81 l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~Ila---sDv~Y~~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 81 LELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILA---SDVLYDEELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp HHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEE---ES--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred hHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEE---ecccchHHHHHHHHHHHHHHhCCCCE
Confidence 356789999998 66777777643222 1 12 268999886 12345567888888888899999887
No 164
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=75.69 E-value=1.8 Score=38.79 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHcCCCC-----eEEEEecccccccCCCcccEEEecCCCcccCCCcc--HHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQD-----VVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESM--FDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~-----~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~--l~~~~~a~~~~L~~~g~~i 70 (280)
|.+.|++-.+.+-..+ |++....++++... ++|.|||=- ..|.. +..++.+.-++|||+|+++
T Consensus 123 ~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~--~fDaVvcse-----vleHV~dp~~~l~~l~~~lkP~G~lf 192 (282)
T KOG1270|consen 123 MVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTG--KFDAVVCSE-----VLEHVKDPQEFLNCLSALLKPNGRLF 192 (282)
T ss_pred HHHHHHHhhhcCchhccccceeeehhhcchhhccc--ccceeeeHH-----HHHHHhCHHHHHHHHHHHhCCCCceE
Confidence 3556666544444332 47777777666554 499888721 13443 6777777788999998765
No 165
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.10 E-value=6.9 Score=34.33 Aligned_cols=76 Identities=16% Similarity=0.129 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc---CC----CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccc
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV---LP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 74 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~---l~----~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a 74 (280)
++.+.++++..|..++|+++++...+.- ++ ..+|.++-.-- -.+....+..+ =+++|+||+++=+..
T Consensus 111 ~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDad-----K~nY~~y~e~~-l~Llr~GGvi~~DNv 184 (237)
T KOG1663|consen 111 YEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFVDAD-----KDNYSNYYERL-LRLLRVGGVIVVDNV 184 (237)
T ss_pred HHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEEccc-----hHHHHHHHHHH-HhhcccccEEEEecc
Confidence 4678899999999999999999877651 11 56777765421 12333333332 378999999999998
Q ss_pred eEEEEEeecC
Q 023569 75 RMWVAPIRSG 84 (280)
Q Consensus 75 ~ly~~~v~~~ 84 (280)
-.+. +|..+
T Consensus 185 l~~G-~v~~p 193 (237)
T KOG1663|consen 185 LWPG-VVADP 193 (237)
T ss_pred ccCC-cccCc
Confidence 8888 66555
No 166
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=75.01 E-value=6.8 Score=36.99 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc--CCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV--LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
++.++++++.|++++ +++++++...+- ...++|+|.-.++|+- .. ++++.-+.++++|.+.
T Consensus 82 v~~i~~N~~~N~~~~-~~v~~~Da~~~l~~~~~~fDvIdlDPfGs~---~~----fld~al~~~~~~glL~ 144 (374)
T TIGR00308 82 VESIKNNVEYNSVEN-IEVPNEDAANVLRYRNRKFHVIDIDPFGTP---AP----FVDSAIQASAERGLLL 144 (374)
T ss_pred HHHHHHHHHHhCCCc-EEEEchhHHHHHHHhCCCCCEEEeCCCCCc---HH----HHHHHHHhcccCCEEE
Confidence 467899999999875 899999988773 2368999999986521 12 3333335567777553
No 167
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=73.65 E-value=4.5 Score=36.83 Aligned_cols=41 Identities=24% Similarity=0.328 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCC
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 42 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~ 42 (280)
|++.|++.++.+++.++++++++|..++.++ ++|+||+++.
T Consensus 70 li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~-~~d~VvaNlP 110 (294)
T PTZ00338 70 MVAELKKRFQNSPLASKLEVIEGDALKTEFP-YFDVCVANVP 110 (294)
T ss_pred HHHHHHHHHHhcCCCCcEEEEECCHhhhccc-ccCEEEecCC
Confidence 4678888888888777899999999887765 6899999875
No 168
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=71.88 E-value=10 Score=32.83 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=35.8
Q ss_pred CeEEEEecccccccCC--CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeE
Q 023569 16 DVVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGV 68 (280)
Q Consensus 16 ~~i~vi~~~~~~~~l~--~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~ 68 (280)
.+|+++.+|+.++... .++|.|+-..+-. .+.....+.+...-.++|+|||.
T Consensus 97 ~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~-~l~~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 97 GEITIYCGDFFALTAADLADVDAVYDRAALI-ALPEEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred CceEEEECcccCCCcccCCCeeEEEehHhHh-hCCHHHHHHHHHHHHHHcCCCCe
Confidence 5689999999887532 4788888754322 33445555666666789999986
No 169
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=71.55 E-value=5.2 Score=38.49 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCC----CcccEEEecCCCccc
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDVIISEWMGYFL 46 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~----~~~DvivsE~~g~~l 46 (280)
.+.|+++++.||+.| ++++.++++++... .++|+||-.|.-+++
T Consensus 328 V~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~ 375 (432)
T COG2265 328 VEAAQENAAANGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGA 375 (432)
T ss_pred HHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccccCCCCEEEECCCCCCC
Confidence 578999999999999 99999999998643 589999999885544
No 170
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=70.67 E-value=14 Score=31.86 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=34.3
Q ss_pred CeEEEEecccccccCC--CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeE
Q 023569 16 DVVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGV 68 (280)
Q Consensus 16 ~~i~vi~~~~~~~~l~--~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~ 68 (280)
.+|+++.+|+.++... +++|.|+--..- +.+.....+.+...-.++|||||.
T Consensus 94 ~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~-~~l~~~~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 94 GNIEIFCGDFFALTAADLGPVDAVYDRAAL-IALPEEMRQRYAAHLLALLPPGAR 147 (213)
T ss_pred CceEEEEccCCCCCcccCCCcCEEEechhh-ccCCHHHHHHHHHHHHHHcCCCCe
Confidence 4588999999887632 578888763211 123444555555566789999996
No 171
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=70.52 E-value=4.3 Score=35.33 Aligned_cols=53 Identities=26% Similarity=0.210 Sum_probs=35.9
Q ss_pred CCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCC--eEEE
Q 023569 15 QDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPT--GVMY 70 (280)
Q Consensus 15 ~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~--g~~i 70 (280)
.+||+++.+|.. -++|. +|+++--.+-.....|.+...+..++ +-|+|| |+++
T Consensus 142 ~~rv~~~~gd~f-~~~P~-~D~~~l~~vLh~~~d~~~~~iL~~~~-~al~pg~~g~ll 196 (241)
T PF00891_consen 142 ADRVEFVPGDFF-DPLPV-ADVYLLRHVLHDWSDEDCVKILRNAA-AALKPGKDGRLL 196 (241)
T ss_dssp TTTEEEEES-TT-TCCSS-ESEEEEESSGGGS-HHHHHHHHHHHH-HHSEECTTEEEE
T ss_pred ccccccccccHH-hhhcc-ccceeeehhhhhcchHHHHHHHHHHH-HHhCCCCCCeEE
Confidence 789999999998 67888 99887755433444456666555444 568988 7653
No 172
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=69.89 E-value=8.2 Score=33.54 Aligned_cols=58 Identities=24% Similarity=0.301 Sum_probs=41.6
Q ss_pred HHHHHHHcCCCCeEEEEecccccccCCCc-ccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 5 ARTLVKANNLQDVVEVIEGSVEDIVLPEK-VDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 5 A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~-~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
-+.+.+.-|++| +++++++++++.-..+ +|+|+|=.+.+ +..+..-...++|+||.++
T Consensus 107 L~~~~~eL~L~n-v~i~~~RaE~~~~~~~~~D~vtsRAva~-------L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 107 LREVKKELGLEN-VEIVHGRAEEFGQEKKQYDVVTSRAVAS-------LNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred HHHHHHHhCCCC-eEEehhhHhhcccccccCcEEEeehccc-------hHHHHHHHHHhcccCCcch
Confidence 356667778887 9999999999875433 99999976542 3333334457999988653
No 173
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=69.79 E-value=4.6 Score=35.84 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCC
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMG 43 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g 43 (280)
|++.|++.++. .++|+++++|..++.++ .+|.||+++.-
T Consensus 63 ~~~~l~~~~~~---~~~v~ii~~D~~~~~~~-~~d~Vv~NlPy 101 (258)
T PRK14896 63 LAEFLRDDEIA---AGNVEIIEGDALKVDLP-EFNKVVSNLPY 101 (258)
T ss_pred HHHHHHHHhcc---CCCEEEEEeccccCCch-hceEEEEcCCc
Confidence 34556655533 34699999999988776 47999999874
No 174
>PF03712 Cu2_monoox_C: Copper type II ascorbate-dependent monooxygenase, C-terminal domain; PDB: 1YI9_A 3MLL_A 1SDW_A 3MID_A 1YIP_A 3PHM_A 3MIC_A 3MIB_A 1OPM_A 3MIG_A ....
Probab=69.48 E-value=5.2 Score=32.83 Aligned_cols=29 Identities=21% Similarity=0.436 Sum_probs=20.7
Q ss_pred eeEEeeCCeeecCCCCEEEEEEEEEeCCC
Q 023569 221 QQVFLFRPSVRVSEGDDLNVSFSMTRSKE 249 (280)
Q Consensus 221 Q~v~~l~~p~~V~~Gd~i~~~~~~~~~~~ 249 (280)
|.++++++|+.+.+||.|..+.++.....
T Consensus 78 Q~~y~l~~~v~i~~GD~l~~~C~Ydns~~ 106 (156)
T PF03712_consen 78 QEFYPLKEPVTIPPGDTLRTECTYDNSDR 106 (156)
T ss_dssp -S-EEEEEEEEE-TT-EEEEEEEEE-TT-
T ss_pred ceeEECCCceEecCCCEEEEEEEEeCCCC
Confidence 66789999999999999999998888643
No 175
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=69.31 E-value=13 Score=33.70 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHcCCCCeEEEEeccccc-ccCCCcc---cEEEecCCCccc--CCCccHHHHHHHHhcccCCCeEEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVED-IVLPEKV---DVIISEWMGYFL--LRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~-~~l~~~~---DvivsE~~g~~l--~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
|.+.|++.+....-.-+|..+.++..+ +.++... +.++. ++|+.+ +...-...++....+.|+|||.++
T Consensus 100 mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~-~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l 174 (301)
T TIGR03438 100 ALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF-FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL 174 (301)
T ss_pred HHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE-EecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 445566655543323458889999887 4566443 33333 234322 122222233333346799999775
No 176
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=69.18 E-value=5.9 Score=37.09 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHcCCCCeEEEEeccccccc--C---------------CCcccEEEecCCCcccCCCccHHH
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIV--L---------------PEKVDVIISEWMGYFLLRESMFDS 54 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l---------------~~~~DvivsE~~g~~l~~E~~l~~ 54 (280)
|++.|+++++.||++ +++++.+++.+.- + ..++|+||-.|.- ..+.+.++..
T Consensus 240 ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-~G~~~~~l~~ 308 (362)
T PRK05031 240 SVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR-AGLDDETLKL 308 (362)
T ss_pred HHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCC-CCCcHHHHHH
Confidence 467899999999997 5999999988741 1 1158999999983 2334444443
No 177
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=68.31 E-value=11 Score=31.52 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=32.1
Q ss_pred eEEEEeccccccc--------CC-CcccEEEecCCCc--cc--CCC----ccHHHHHHHHhcccCCCeEEE
Q 023569 17 VVEVIEGSVEDIV--------LP-EKVDVIISEWMGY--FL--LRE----SMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 17 ~i~vi~~~~~~~~--------l~-~~~DvivsE~~g~--~l--~~E----~~l~~~~~a~~~~L~~~g~~i 70 (280)
.+++++++..+.. ++ +++|+|++..... +. +.. ..++.++....++|+|||+++
T Consensus 73 ~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv 143 (188)
T TIGR00438 73 NVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFV 143 (188)
T ss_pred CceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEE
Confidence 3677887876643 33 5799999975211 11 110 112445555567899999754
No 178
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=66.57 E-value=13 Score=33.64 Aligned_cols=67 Identities=19% Similarity=0.272 Sum_probs=35.7
Q ss_pred HHHHHHHHH-HcCCCCeEEEEecccccccCC-CcccEEEecC-CCcccCCCccHHHHHHHHhcccCCCeEEEc
Q 023569 2 SDHARTLVK-ANNLQDVVEVIEGSVEDIVLP-EKVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMYP 71 (280)
Q Consensus 2 a~~A~~~i~-~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~-~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP 71 (280)
++.|+++++ ..|++++++++.++..++... ..+|+|+--. .| .-.|.-.+ ++.--.+.++||++++=
T Consensus 159 ~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg--~~~e~K~~-Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 159 NELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAALVG--MDAEPKEE-ILEHLAKHMAPGARLVV 228 (276)
T ss_dssp HHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT-S------SHHH-HHHHHHHHS-TTSEEEE
T ss_pred HHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhhcc--cccchHHH-HHHHHHhhCCCCcEEEE
Confidence 467899998 779999999999999887654 5889776532 22 11232222 33333467888886653
No 179
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=65.95 E-value=4.1 Score=36.39 Aligned_cols=47 Identities=36% Similarity=0.454 Sum_probs=27.5
Q ss_pred EEEecccccc-------cCCCcccEEEecCCCcccCCCc---cHHHHHHHH---hcccCCCeEEE
Q 023569 19 EVIEGSVEDI-------VLPEKVDVIISEWMGYFLLRES---MFDSVICAR---DRWLKPTGVMY 70 (280)
Q Consensus 19 ~vi~~~~~~~-------~l~~~~DvivsE~~g~~l~~E~---~l~~~~~a~---~~~L~~~g~~i 70 (280)
.|++.|+.+- .+|.++|+|+|=. .-|. -++++..|- -++|||||.+|
T Consensus 137 ~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~f-----cLE~a~~d~~~y~~al~ni~~lLkpGG~Li 196 (256)
T PF01234_consen 137 QVVPCDVTQPNPLDPPVVLPPKFDCVISSF-----CLESACKDLDEYRRALRNISSLLKPGGHLI 196 (256)
T ss_dssp EEEE--TTSSSTTTTS-SS-SSEEEEEEES-----SHHHH-SSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred eEEEeeccCCCCCCccccCccchhhhhhhH-----HHHHHcCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 3788887764 2456799999832 2231 234444443 36899999875
No 180
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=65.55 E-value=8.8 Score=35.81 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccC-----------C------CcccEEEecCCC
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVL-----------P------EKVDVIISEWMG 43 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l-----------~------~~~DvivsE~~g 43 (280)
|++.|+++++.||+++ |+++.+++.++-- . .++|+|+-.|.-
T Consensus 231 av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR 289 (353)
T TIGR02143 231 SVNAAQYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPR 289 (353)
T ss_pred HHHHHHHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCC
Confidence 4688999999999976 9999999887521 1 137999999984
No 181
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=65.02 E-value=9.8 Score=35.87 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=44.5
Q ss_pred cCCC-CeEEEEeccccccc--CCCcccEEEecCCCcccCCCccH---HHHHHHHhcccCCCeEEEcccceEEEEE
Q 023569 12 NNLQ-DVVEVIEGSVEDIV--LPEKVDVIISEWMGYFLLRESMF---DSVICARDRWLKPTGVMYPSHARMWVAP 80 (280)
Q Consensus 12 Ngl~-~~i~vi~~~~~~~~--l~~~~DvivsE~~g~~l~~E~~l---~~~~~a~~~~L~~~g~~iP~~a~ly~~~ 80 (280)
|.++ -|++|+..|....- -.+++|++|-+..+..-+.-+-+ +-..- ..+-|+++|.|+=++..-|-.|
T Consensus 341 ~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~l-l~~~l~e~Gl~VvQags~y~tp 414 (508)
T COG4262 341 GSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRL-LSRHLAETGLMVVQAGSPYFTP 414 (508)
T ss_pred CCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHH-HHHhcCcCceEEEecCCCccCC
Confidence 3455 58999998876653 23799999999876433222222 21222 3467899999998887766654
No 182
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=64.59 E-value=20 Score=33.48 Aligned_cols=73 Identities=26% Similarity=0.393 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCCCeEEEEeccccccc--CC--CcccEEEecCC--CcccCCC-----------------ccHHHHHHHH
Q 023569 3 DHARTLVKANNLQDVVEVIEGSVEDIV--LP--EKVDVIISEWM--GYFLLRE-----------------SMFDSVICAR 59 (280)
Q Consensus 3 ~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l~--~~~DvivsE~~--g~~l~~E-----------------~~l~~~~~a~ 59 (280)
+..+.+++.-|+.+ +.+++.+.+.+. .+ +++|-|+.... |++.+.- .....++.+.
T Consensus 196 ~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a 274 (355)
T COG0144 196 KRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAA 274 (355)
T ss_pred HHHHHHHHHcCCCc-eEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHH
Confidence 45677788889988 777777776553 23 46999998885 4444431 1224566777
Q ss_pred hcccCCCeEEEcccceE
Q 023569 60 DRWLKPTGVMYPSHARM 76 (280)
Q Consensus 60 ~~~L~~~g~~iP~~a~l 76 (280)
-++|||||.++=+.|++
T Consensus 275 ~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 275 LKLLKPGGVLVYSTCSL 291 (355)
T ss_pred HHhcCCCCEEEEEccCC
Confidence 78999999997666554
No 183
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=61.53 E-value=14 Score=31.82 Aligned_cols=71 Identities=27% Similarity=0.324 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccc-ccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccceEEEEE
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSV-EDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVAP 80 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~-~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a~ly~~~ 80 (280)
.+.|+++++.+|+.++|++..++- ..+...+.+|.||--=|| ++-+.. ++.+....+ ++...+-++|
T Consensus 34 L~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMG----G~lI~~-ILe~~~~~~-------~~~~~lILqP 101 (205)
T PF04816_consen 34 LEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMG----GELIIE-ILEAGPEKL-------SSAKRLILQP 101 (205)
T ss_dssp HHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----HHHHHH-HHHHTGGGG-------TT--EEEEEE
T ss_pred HHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCC----HHHHHH-HHHhhHHHh-------ccCCeEEEeC
Confidence 368999999999999999999984 333333458888776666 333333 333332222 3334566777
Q ss_pred eecC
Q 023569 81 IRSG 84 (280)
Q Consensus 81 v~~~ 84 (280)
....
T Consensus 102 ~~~~ 105 (205)
T PF04816_consen 102 NTHA 105 (205)
T ss_dssp SS-H
T ss_pred CCCh
Confidence 7543
No 184
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=59.77 E-value=11 Score=35.61 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=43.1
Q ss_pred HcCCCCeEEEEeccccccc--C-CCccc-EEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccc
Q 023569 11 ANNLQDVVEVIEGSVEDIV--L-PEKVD-VIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 74 (280)
Q Consensus 11 ~Ngl~~~i~vi~~~~~~~~--l-~~~~D-vivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a 74 (280)
+.++ ++|++.++.+.+.- + |+.+| .+++..|+.+-. ..+..++.+-.+-++|||+++=.++
T Consensus 271 r~~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~--~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 271 RARL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDP--EQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred hcCC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCH--HHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 3455 89999999999883 5 47888 556666654433 5566666666788999998874443
No 185
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=59.43 E-value=33 Score=29.26 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCC
Q 023569 3 DHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM 42 (280)
Q Consensus 3 ~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~ 42 (280)
+...+.++.|+.. +.++..+..+---++++||+|-++.
T Consensus 82 ~~Tl~TA~~n~~~--~~~V~tdl~~~l~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 82 EATLETARCNRVH--IDVVRTDLLSGLRNESVDVLVFNPP 119 (209)
T ss_pred HHHHHHHHhcCCc--cceeehhHHhhhccCCccEEEECCC
Confidence 4556777888864 7788877665545599999999885
No 186
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=57.14 E-value=30 Score=25.32 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=25.7
Q ss_pred CCCeeeeEEeeCCeeecCCCCEEEEEEEEEeCCCCCe
Q 023569 216 GTHWGQQVFLFRPSVRVSEGDDLNVSFSMTRSKENHR 252 (280)
Q Consensus 216 ~thW~Q~v~~l~~p~~V~~Gd~i~~~~~~~~~~~~~r 252 (280)
..-.++.+.-+.-|-.+.+||++.+.+.+.+..+...
T Consensus 50 ~~v~~p~~i~~~lP~~l~~GD~~~i~v~v~N~~~~~~ 86 (92)
T PF00207_consen 50 ITVFKPFFIQLNLPRSLRRGDQIQIPVTVFNYTDKDQ 86 (92)
T ss_dssp EEEB-SEEEEEE--SEEETTSEEEEEEEEEE-SSS-E
T ss_pred EEEEeeEEEEcCCCcEEecCCEEEEEEEEEeCCCCCE
Confidence 3455666777777889999999999999998877544
No 187
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=56.89 E-value=39 Score=29.25 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=36.8
Q ss_pred CeEEEEecccccccCC--CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeE
Q 023569 16 DVVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGV 68 (280)
Q Consensus 16 ~~i~vi~~~~~~~~l~--~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~ 68 (280)
++|+++.+|.-++.-. +++|+|.==.. .+.+...+-+.......++|+|||.
T Consensus 97 ~~i~~~~gDfF~l~~~~~g~fD~iyDr~~-l~Alpp~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 97 GRITIYCGDFFELPPEDVGKFDLIYDRTF-LCALPPEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp SSEEEEES-TTTGGGSCHHSEEEEEECSS-TTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred CceEEEEcccccCChhhcCCceEEEEecc-cccCCHHHHHHHHHHHHHHhCCCCc
Confidence 3689999999887654 57999875322 2456677777776666789999998
No 188
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=56.83 E-value=11 Score=32.92 Aligned_cols=48 Identities=27% Similarity=0.387 Sum_probs=29.4
Q ss_pred EEecccccccCC----CcccEEEecCCCcccCCC-ccHHHHHHHHhcccCCCeE
Q 023569 20 VIEGSVEDIVLP----EKVDVIISEWMGYFLLRE-SMFDSVICARDRWLKPTGV 68 (280)
Q Consensus 20 vi~~~~~~~~l~----~~~DvivsE~~g~~l~~E-~~l~~~~~a~~~~L~~~g~ 68 (280)
|++.|--+.++| +++|||++-++-.++..- .=-+-+..| .++|+|+|.
T Consensus 87 I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~-~~fL~~~g~ 139 (219)
T PF11968_consen 87 ILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRA-HKFLKPPGL 139 (219)
T ss_pred ceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHH-HHHhCCCCc
Confidence 344444444566 799999998876665542 112223333 478999987
No 189
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=55.84 E-value=13 Score=34.72 Aligned_cols=43 Identities=33% Similarity=0.357 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc----------------CC-CcccEEEecCCCcc
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV----------------LP-EKVDVIISEWMGYF 45 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~----------------l~-~~~DvivsE~~g~~ 45 (280)
.+.|+++++.||+++ ++++.++++++. +. .++|+||-.|.=+|
T Consensus 231 v~~A~~Na~~N~i~n-~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G 290 (352)
T PF05958_consen 231 VEDARENAKLNGIDN-VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAG 290 (352)
T ss_dssp HHHHHHHHHHTT--S-EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-
T ss_pred HHHHHHHHHHcCCCc-ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCC
Confidence 578999999999987 999998877652 11 36899999987444
No 190
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=54.62 E-value=14 Score=30.73 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc--CC-C-cccEEEecCC
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV--LP-E-KVDVIISEWM 42 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~--l~-~-~~DvivsE~~ 42 (280)
.++|+.+++--|.+++|+++++|..++. +. . .+|+|..-|.
T Consensus 34 ~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 34 LECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp HHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred HHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 4789999999999999999999998873 22 2 2788887664
No 191
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=53.92 E-value=30 Score=31.83 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHcCC----CCeEEEEecccccccCCCcccEEEec
Q 023569 1 MSDHARTLVKANNL----QDVVEVIEGSVEDIVLPEKVDVIISE 40 (280)
Q Consensus 1 ma~~A~~~i~~Ngl----~~~i~vi~~~~~~~~l~~~~DvivsE 40 (280)
|.+.|++..+..+. ...+++..++.+++ ++++|+|+|-
T Consensus 178 ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 178 MVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred HHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 56778887766432 24578888777653 5789999984
No 192
>PRK00536 speE spermidine synthase; Provisional
Probab=52.39 E-value=15 Score=32.88 Aligned_cols=40 Identities=25% Similarity=0.182 Sum_probs=28.6
Q ss_pred CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccceEEEE
Q 023569 32 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWVA 79 (280)
Q Consensus 32 ~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a~ly~~ 79 (280)
+++||||.... +.+ .......+.|+|||+++=++...+..
T Consensus 138 ~~fDVIIvDs~----~~~----~fy~~~~~~L~~~Gi~v~Qs~sp~~~ 177 (262)
T PRK00536 138 KKYDLIICLQE----PDI----HKIDGLKRMLKEDGVFISVAKHPLLE 177 (262)
T ss_pred CcCCEEEEcCC----CCh----HHHHHHHHhcCCCcEEEECCCCcccC
Confidence 68999999843 222 22234467899999999988877654
No 193
>PRK06202 hypothetical protein; Provisional
Probab=51.17 E-value=21 Score=30.77 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccC
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLK 64 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~ 64 (280)
++.|++....++ +++...+..++..+ +++|+|++...-.-+..+ -+..++....+.++
T Consensus 101 l~~a~~~~~~~~----~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~-~~~~~l~~~~r~~~ 159 (232)
T PRK06202 101 VAFARANPRRPG----VTFRQAVSDELVAEGERFDVVTSNHFLHHLDDA-EVVRLLADSAALAR 159 (232)
T ss_pred HHHHHhccccCC----CeEEEEecccccccCCCccEEEECCeeecCChH-HHHHHHHHHHHhcC
Confidence 445555443333 45555555555544 799999996432222222 23334444446666
No 194
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=51.07 E-value=19 Score=30.76 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=33.1
Q ss_pred CCeEEEEeccccc-ccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccce
Q 023569 15 QDVVEVIEGSVED-IVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHAR 75 (280)
Q Consensus 15 ~~~i~vi~~~~~~-~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a~ 75 (280)
.++|++-+.++.+ ...+.++|+|+|--+-. -+.+.....++..-.+.|+|||.++=..+.
T Consensus 117 r~~V~F~~~NL~~~~~~~~~fD~I~CRNVlI-YF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 117 RKMVRFRRHNLLDPDPPFGRFDLIFCRNVLI-YFDPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HTTEEEEE--TT-S------EEEEEE-SSGG-GS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred cCceEEEecccCCCCcccCCccEEEecCEEE-EeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 3568898888888 23348999999975421 234455555666666889999988755443
No 195
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=50.31 E-value=19 Score=31.50 Aligned_cols=41 Identities=32% Similarity=0.391 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCC-eEEEEecccccccCCCcccEEEecCC
Q 023569 2 SDHARTLVKANNLQD-VVEVIEGSVEDIVLPEKVDVIISEWM 42 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~-~i~vi~~~~~~~~l~~~~DvivsE~~ 42 (280)
++.||++++.||+.| +|+.+.|+.+|-==|..=-|-+||-.
T Consensus 40 ae~Ar~iL~~~gl~~V~Ve~~~G~LtDHYdP~~k~vrLS~~v 81 (222)
T PF04298_consen 40 AEVARHILDRNGLSDVRVERVPGELTDHYDPRNKVVRLSEDV 81 (222)
T ss_pred HHHHHHHHHHCCCCCeeEEEeCCCCCCCcCCCCCEEEeCCcc
Confidence 689999999999986 55666666666545533335566643
No 196
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=49.94 E-value=13 Score=33.72 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=38.3
Q ss_pred CCCeEEEEecccccccCC--CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccc
Q 023569 14 LQDVVEVIEGSVEDIVLP--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 74 (280)
Q Consensus 14 l~~~i~vi~~~~~~~~l~--~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a 74 (280)
+.+.|++-..|+.+-+.| +++|+|+|.-+-.. +.+.....++..-.+.|+|||.++=..+
T Consensus 202 lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliy-F~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 202 LANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIY-FDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred HHccCEEEcccCCCCCCccCCCcceeeHhhHHhc-CCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 446788888888764433 79999999643211 2233344455455678999998754443
No 197
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=49.72 E-value=19 Score=31.99 Aligned_cols=70 Identities=29% Similarity=0.249 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCCeEEEEecccccccCC--------CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccc
Q 023569 3 DHARTLVKANNLQDVVEVIEGSVEDIVLP--------EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 74 (280)
Q Consensus 3 ~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~--------~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a 74 (280)
..|.++++.|.-.+ .+-.+..+.|+..| +.+|+|+.=-.-+.+.-|.|.. ++....++|||||.++=.-+
T Consensus 107 p~Ai~~vk~~~~~~-e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~-a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 107 PRAIELVKKSSGYD-ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQS-VIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred hHHHHHHHhccccc-hhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHH-HHHHHHHHhCCCcEEEEeec
Confidence 35667777775433 23334444444322 6788877632222233344444 44556689999998764433
No 198
>PRK05785 hypothetical protein; Provisional
Probab=49.58 E-value=32 Score=29.82 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=29.1
Q ss_pred EEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCe
Q 023569 19 EVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTG 67 (280)
Q Consensus 19 ~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g 67 (280)
..++++.++++++ +++|+|++-. .+-+=.-++..+..-.|.|||.+
T Consensus 95 ~~~~~d~~~lp~~d~sfD~v~~~~---~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 95 DKVVGSFEALPFRDKSFDVVMSSF---ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ceEEechhhCCCCCCCEEEEEecC---hhhccCCHHHHHHHHHHHhcCce
Confidence 3567888888877 7899999943 12111123444445568899843
No 199
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=48.22 E-value=28 Score=30.88 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=31.9
Q ss_pred HHHHHHHHHc-CCCCeEEEEecccccccCC------CcccEEEecCC
Q 023569 3 DHARTLVKAN-NLQDVVEVIEGSVEDIVLP------EKVDVIISEWM 42 (280)
Q Consensus 3 ~~A~~~i~~N-gl~~~i~vi~~~~~~~~l~------~~~DvivsE~~ 42 (280)
+.|+.+|.+| +|+..|++...+-.+--++ |++|+.+|++.
T Consensus 116 ~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPP 162 (292)
T COG3129 116 SSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPP 162 (292)
T ss_pred HHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCC
Confidence 5789999999 9999999887654444333 89999999985
No 200
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=47.32 E-value=24 Score=33.38 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCCCC-eEEEEeccccccc--CCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEE
Q 023569 2 SDHARTLVKANNLQD-VVEVIEGSVEDIV--LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~-~i~vi~~~~~~~~--l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
.+..+++++.|++++ +|++.++|...+- ..+++|+|=-+++|+-. + ++++.-+-++.||.+
T Consensus 87 ~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDPfGSp~------p-fldsA~~~v~~gGll 150 (377)
T PF02005_consen 87 VELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDPFGSPA------P-FLDSALQAVKDGGLL 150 (377)
T ss_dssp HHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--SS--H------H-HHHHHHHHEEEEEEE
T ss_pred HHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCCCCCcc------H-hHHHHHHHhhcCCEE
Confidence 467899999999998 8999999988765 56899999999988532 2 344444557887764
No 201
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=47.01 E-value=15 Score=28.94 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=23.8
Q ss_pred CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 32 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 32 ~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
+++|+|++.-+-..+. . ...++..-.++|||||.++
T Consensus 77 ~~fD~i~~~~~l~~~~--d-~~~~l~~l~~~LkpgG~l~ 112 (161)
T PF13489_consen 77 GSFDLIICNDVLEHLP--D-PEEFLKELSRLLKPGGYLV 112 (161)
T ss_dssp SSEEEEEEESSGGGSS--H-HHHHHHHHHHCEEEEEEEE
T ss_pred cchhhHhhHHHHhhcc--c-HHHHHHHHHHhcCCCCEEE
Confidence 7999999964322222 2 4455555668999999753
No 202
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=45.99 E-value=33 Score=29.36 Aligned_cols=40 Identities=25% Similarity=0.183 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCC-Ccc
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWM-GYF 45 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~-g~~ 45 (280)
++.|+++.++ +.+.|.++.++++++..+ +|.+|.+|. |+-
T Consensus 81 ~ei~r~N~~~--l~g~v~f~~~dv~~~~~~--~dtvimNPPFG~~ 121 (198)
T COG2263 81 LEIARANAEE--LLGDVEFVVADVSDFRGK--FDTVIMNPPFGSQ 121 (198)
T ss_pred HHHHHHHHHh--hCCceEEEEcchhhcCCc--cceEEECCCCccc
Confidence 5788888887 566799999999887765 888888884 543
No 203
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=45.78 E-value=22 Score=29.49 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=28.5
Q ss_pred CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 32 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 32 ~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
.++|+||..|.- +.|.++.....+.+.++|+++.+|
T Consensus 85 ~~~d~vv~DPPF---l~~ec~~k~a~ti~~L~k~~~kii 120 (162)
T PF10237_consen 85 GKFDVVVIDPPF---LSEECLTKTAETIRLLLKPGGKII 120 (162)
T ss_pred CCceEEEECCCC---CCHHHHHHHHHHHHHHhCccceEE
Confidence 689999999974 788888766666667778877766
No 204
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=44.87 E-value=5.9 Score=34.20 Aligned_cols=61 Identities=11% Similarity=0.215 Sum_probs=31.9
Q ss_pred HHHHHHcCCCCeEEEEecccccccC-------C--CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 6 RTLVKANNLQDVVEVIEGSVEDIVL-------P--EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 6 ~~~i~~Ngl~~~i~vi~~~~~~~~l-------~--~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
++.++...+.++|++++|++.+.+. . ... ++|. .++.-..+.++..+.. ...++++|+.+|
T Consensus 75 ~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~-vlVi--lDs~H~~~hvl~eL~~-y~plv~~G~Y~I 144 (206)
T PF04989_consen 75 RKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP-VLVI--LDSSHTHEHVLAELEA-YAPLVSPGSYLI 144 (206)
T ss_dssp S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS-EEEE--ESS----SSHHHHHHH-HHHT--TT-EEE
T ss_pred hHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc-eEEE--ECCCccHHHHHHHHHH-hCccCCCCCEEE
Confidence 4445567788999999999988741 1 122 3333 3555667888887654 778999998754
No 205
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=44.55 E-value=18 Score=31.48 Aligned_cols=66 Identities=23% Similarity=0.293 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 3 DHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 3 ~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
+.|++.+.. +-....++++.-+++...+ .++|+|-+-|.-..|-.+..+.-+..++ .-|+|+|.|+
T Consensus 92 ~~a~~~l~~-~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk-~~L~~~G~Iv 158 (218)
T PF05891_consen 92 EQAKEYLGK-DNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCK-QALKPNGVIV 158 (218)
T ss_dssp HHHHHHTCC-GGCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHH-HHEEEEEEEE
T ss_pred HHHHHHhcc-cCCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHH-HhCcCCcEEE
Confidence 345544332 2234567888788887654 6999999999755566667777665554 5678988554
No 206
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=43.80 E-value=60 Score=29.89 Aligned_cols=62 Identities=24% Similarity=0.281 Sum_probs=38.9
Q ss_pred CCeEEEEecccccccCCCcccEEEecCCCcccCCC--ccHHHHHHHHhcccCCCeEEE------cccceEEEEEe
Q 023569 15 QDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRE--SMFDSVICARDRWLKPTGVMY------PSHARMWVAPI 81 (280)
Q Consensus 15 ~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E--~~l~~~~~a~~~~L~~~g~~i------P~~a~ly~~~v 81 (280)
+..+..+.--+++++-.+.+|+|+| || +++. .-+..+...+ ..|+|||.+| +.....-++|-
T Consensus 164 ~~~~~~lplgvE~Lp~~~~FDtVF~--MG--VLYHrr~Pl~~L~~Lk-~~L~~gGeLvLETlvi~g~~~~~L~P~ 233 (315)
T PF08003_consen 164 DPPVFELPLGVEDLPNLGAFDTVFS--MG--VLYHRRSPLDHLKQLK-DSLRPGGELVLETLVIDGDENTVLVPE 233 (315)
T ss_pred CccEEEcCcchhhccccCCcCEEEE--ee--ehhccCCHHHHHHHHH-HhhCCCCEEEEEEeeecCCCceEEccC
Confidence 3445566556666655589999999 76 5554 4455544443 5689998554 66665555543
No 207
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=43.18 E-value=65 Score=25.17 Aligned_cols=39 Identities=5% Similarity=0.158 Sum_probs=29.4
Q ss_pred eeecCCCCEEEEEEEEEeCCCCCeEEEEEEEEEEeccccc
Q 023569 229 SVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQ 268 (280)
Q Consensus 229 p~~V~~Gd~i~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~ 268 (280)
--++++|+.++++.++.-...- -.+.++++|++.+.+|.
T Consensus 72 ~CPl~~G~~~~y~~~~~V~~~~-P~v~~~V~~~L~d~~g~ 110 (120)
T cd00918 72 KCPIKKGQHYDIKYTWNVPAIL-PKIKAVVKAVLIGDHGV 110 (120)
T ss_pred eCCCcCCcEEEEEEeeeccccC-CCeEEEEEEEEEcCCCc
Confidence 3677899999998888764432 34678999999887774
No 208
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=42.78 E-value=19 Score=31.59 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=38.2
Q ss_pred CCCCeEEEEecccccccCCCcccEEEecCCCcccCCC-ccHHHHHHHHhcccCCCeEE
Q 023569 13 NLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRE-SMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 13 gl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E-~~l~~~~~a~~~~L~~~g~~ 69 (280)
.+.| .++..+|+.+..-+.+.|+|+++-.-..|... ..++.++. .|.|||.+
T Consensus 73 rlp~-~~f~~aDl~~w~p~~~~dllfaNAvlqWlpdH~~ll~rL~~----~L~Pgg~L 125 (257)
T COG4106 73 RLPD-ATFEEADLRTWKPEQPTDLLFANAVLQWLPDHPELLPRLVS----QLAPGGVL 125 (257)
T ss_pred hCCC-CceecccHhhcCCCCccchhhhhhhhhhccccHHHHHHHHH----hhCCCceE
Confidence 3444 78999999998888899999999765555554 34565543 58999965
No 209
>KOG2730 consensus Methylase [General function prediction only]
Probab=42.10 E-value=11 Score=33.02 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc----CC-CcccEEEec
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV----LP-EKVDVIISE 40 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~----l~-~~~DvivsE 40 (280)
+.+|+.+++-.|..+||++++||.-++. +. .++|++.--
T Consensus 129 Ia~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 129 IACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred HHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 4689999999999999999999998873 22 456666543
No 210
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=41.73 E-value=34 Score=30.00 Aligned_cols=58 Identities=29% Similarity=0.392 Sum_probs=39.9
Q ss_pred HHHcCCC--CeEEEEeccccccc--CC-CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEE
Q 023569 9 VKANNLQ--DVVEVIEGSVEDIV--LP-EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 9 i~~Ngl~--~~i~vi~~~~~~~~--l~-~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
++.+|+. ++|.++.|.=+|+. || ..+|=|.-...+ -++|......-++ -|+|||+|++
T Consensus 140 mr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~--e~yEdl~~~hqh~-~rLLkP~gv~ 202 (271)
T KOG1709|consen 140 MRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS--ELYEDLRHFHQHV-VRLLKPEGVF 202 (271)
T ss_pred HHhcccccccceEEEecchHhhhccccccCcceeEeechh--hHHHHHHHHHHHH-hhhcCCCceE
Confidence 4567773 67888888888873 66 568888776532 4556666655444 3899999865
No 211
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=39.94 E-value=50 Score=29.26 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=30.4
Q ss_pred EEEEeccccccc--------CC-CcccEEEecCC-CcccCC---CccHHHHH----HHHhcccCCCeEEE
Q 023569 18 VEVIEGSVEDIV--------LP-EKVDVIISEWM-GYFLLR---ESMFDSVI----CARDRWLKPTGVMY 70 (280)
Q Consensus 18 i~vi~~~~~~~~--------l~-~~~DvivsE~~-g~~l~~---E~~l~~~~----~a~~~~L~~~g~~i 70 (280)
|.-+++|++... +. +|+|+|||.-- +.-++. |=|...++ .-..+.|||||.++
T Consensus 91 V~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 91 VIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred eEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 445556655542 22 79999999852 322333 32322222 22457899999876
No 212
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=39.27 E-value=39 Score=28.98 Aligned_cols=41 Identities=32% Similarity=0.388 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCCC-eEEEEecccccccCCCcccEEEecCC
Q 023569 2 SDHARTLVKANNLQD-VVEVIEGSVEDIVLPEKVDVIISEWM 42 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~-~i~vi~~~~~~~~l~~~~DvivsE~~ 42 (280)
|+.||+++..||+-| .|+.+.|..+|-==|.+=-|=+||..
T Consensus 43 aevAr~iLd~nGl~dV~Ve~v~G~LTDHYDP~~kvvrLSe~~ 84 (226)
T COG2738 43 AEVARMILDENGLYDVPVEEVPGTLTDHYDPRRKVVRLSEAN 84 (226)
T ss_pred HHHHHHHHhhcCCccceeeeecCCcccccChhhheeeccccc
Confidence 689999999999976 67778888777655644446677764
No 213
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=38.64 E-value=45 Score=30.02 Aligned_cols=52 Identities=19% Similarity=0.410 Sum_probs=34.5
Q ss_pred CCeEEEEecccccccCC----CcccEEEecCCCccc-CCCccHHHHHHHHhcccCCCeEEE
Q 023569 15 QDVVEVIEGSVEDIVLP----EKVDVIISEWMGYFL-LRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 15 ~~~i~vi~~~~~~~~l~----~~~DvivsE~~g~~l-~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
.+.+.+..||-.++-.+ +++|+||+-- ++ -.+++++.+ ..-.++|||||..|
T Consensus 143 ~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F---FIDTA~Ni~~Yi-~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 143 PSNLSMCAGDFLEVYGPDENKGSFDVVVTCF---FIDTAENIIEYI-ETIEHLLKPGGYWI 199 (270)
T ss_pred CCceeEecCccEEecCCcccCCcccEEEEEE---EeechHHHHHHH-HHHHHHhccCCEEE
Confidence 34577777777777544 4899999962 22 235666654 44568999999544
No 214
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=38.25 E-value=94 Score=23.71 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=27.0
Q ss_pred eecCCCCEEEEEEEEEeCCCCCeEEEEEEEEEEecccccc
Q 023569 230 VRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQI 269 (280)
Q Consensus 230 ~~V~~Gd~i~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~ 269 (280)
-+|..||+|+++.++..... .. -+.++..+.+++|+.
T Consensus 78 ~pv~~Gdtl~~~~~v~~~~~-~~--~v~~~~~~~nq~G~~ 114 (123)
T cd03455 78 APLYAGDTLRFGGRVTAKRD-DE--VVTVELWARNSEGDH 114 (123)
T ss_pred ccccCCCEEEEEEEEEeecc-Cc--EEEEEEEEEcCCCCE
Confidence 34567999999888775433 22 578888888888875
No 215
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=37.89 E-value=35 Score=29.83 Aligned_cols=43 Identities=33% Similarity=0.378 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccc-cCCCcccEEEecCCCc
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDI-VLPEKVDVIISEWMGY 44 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~-~l~~~~DvivsE~~g~ 44 (280)
.+.|.+++++|++.++|++..+|--.. .+...+|++|=--||.
T Consensus 53 l~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 53 LESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred HHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH
Confidence 367999999999999999999887322 2235899888766763
No 216
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=37.75 E-value=38 Score=29.25 Aligned_cols=57 Identities=25% Similarity=0.203 Sum_probs=37.8
Q ss_pred cCCCCeEEEEecccccccCCCcccEEEecCCCcc----cCCCccHHHHHHHHhcccCCCeEE
Q 023569 12 NNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYF----LLRESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 12 Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~----l~~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
-.++| ++++.+....+..|++.|++.......- .+.-+....+-.+..+-|||||+.
T Consensus 102 ~~~aN-~e~~~~~~~A~~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~ 162 (238)
T COG4798 102 PVYAN-VEVIGKPLVALGAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVY 162 (238)
T ss_pred hhhhh-hhhhCCcccccCCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEE
Confidence 44455 6777777666676788888887654332 334455666655666889999965
No 217
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=37.57 E-value=32 Score=32.02 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=34.3
Q ss_pred eEEEEeccccccc----C--C-CcccEEEecC-CCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 17 VVEVIEGSVEDIV----L--P-EKVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 17 ~i~vi~~~~~~~~----l--~-~~~DvivsE~-~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
.+.++.+|+.... + + .++|||=|-- |.+..-.|.-...++.-..+.|+|||.+|
T Consensus 173 ~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 173 TAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred eeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 4678888887664 2 2 3499988764 34433344444444444457899999876
No 218
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=36.42 E-value=81 Score=22.94 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCCCeEEEEecccccccCC-CcccEEEec
Q 023569 3 DHARTLVKANNLQDVVEVIEGSVEDIVLP-EKVDVIISE 40 (280)
Q Consensus 3 ~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~-~~~DvivsE 40 (280)
-.++++++.+|++ +++-+.++.++.-- ..+|++|+-
T Consensus 5 mkIk~~L~e~Gi~--~~ve~~diss~~~~~~~aDiiVtt 41 (85)
T PRK10222 5 MKVDQFLTQSNID--HTVNSCAVGEYKSELSGADIIIAS 41 (85)
T ss_pred HHHHHHHHHcCCC--eEEEEeehhhcccCCCCCCEEEEC
Confidence 3578899999997 67888888777422 378999984
No 219
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=36.30 E-value=95 Score=24.16 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=29.7
Q ss_pred CeeecCCCCEEEEEEEEEeCCCCCeEEEEEEEEEEeccccc
Q 023569 228 PSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQ 268 (280)
Q Consensus 228 ~p~~V~~Gd~i~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~ 268 (280)
..-++++|+.++.+.++.-.+.- -.+.++++|++.+.++.
T Consensus 75 ~~CPl~~G~~~~y~~~~~v~~~~-P~i~~~v~~~L~d~~~~ 114 (123)
T cd00916 75 TSCPLSAGEDVTYTLSLPVLAPY-PGISVTVEWELTDDDGQ 114 (123)
T ss_pred CCCCCcCCcEEEEEEeeeccccC-CCeEEEEEEEEEcCCCC
Confidence 45678999999999988765432 34668899999887554
No 220
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=36.13 E-value=1e+02 Score=23.82 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=27.3
Q ss_pred ecCCCCEEEEEEEEEeCCCC--CeEEEEEEEEEEecccccc
Q 023569 231 RVSEGDDLNVSFSMTRSKEN--HRLLEVEFSCEIRESTGQI 269 (280)
Q Consensus 231 ~V~~Gd~i~~~~~~~~~~~~--~r~~~i~~~~~~~~~~~~~ 269 (280)
+|.+||+|.++.++...... .+.--++++..+.+++|+.
T Consensus 90 pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq~g~~ 130 (140)
T cd03446 90 PVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQRGEV 130 (140)
T ss_pred CCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCE
Confidence 36789999998888754322 2223478888888888875
No 221
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=35.93 E-value=95 Score=29.36 Aligned_cols=61 Identities=10% Similarity=0.209 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCCC-eEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 3 DHARTLVKANNLQD-VVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 3 ~~A~~~i~~Ngl~~-~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
...+++++.||+.. .|+.+.. .-++|..+|+|+--+.=+. ..++..+......|.||+.+|
T Consensus 78 ~~~~~n~~~n~~~~~~~~~~~~---~~~~~~~~d~vl~~~PK~~----~~l~~~l~~l~~~l~~~~~ii 139 (378)
T PRK15001 78 LATRENLRLNGIDESSVKFLDS---TADYPQQPGVVLIKVPKTL----ALLEQQLRALRKVVTSDTRII 139 (378)
T ss_pred HHHHHHHHHcCCCcccceeecc---cccccCCCCEEEEEeCCCH----HHHHHHHHHHHhhCCCCCEEE
Confidence 35678899999974 3677642 2257778999887654332 234444444456788887765
No 222
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=35.64 E-value=82 Score=27.93 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCC----CcccEEEecCCCcc
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLP----EKVDVIISEWMGYF 45 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~----~~~DvivsE~~g~~ 45 (280)
.+.-++..+..|+. |+.++.|.++ +|| +++|++++.|.-+.
T Consensus 80 l~fI~~~a~~~gl~--i~~~~~DlR~-~LP~~~~~~fD~f~TDPPyT~ 124 (243)
T PF01861_consen 80 LDFINRVAEEEGLP--IEAVHYDLRD-PLPEELRGKFDVFFTDPPYTP 124 (243)
T ss_dssp HHHHHHHHHHHT----EEEE---TTS----TTTSS-BSEEEE---SSH
T ss_pred HHHHHHHHHHcCCc--eEEEEecccc-cCCHHHhcCCCEEEeCCCCCH
Confidence 34556677788887 8888877766 455 79999999998544
No 223
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=35.15 E-value=1e+02 Score=24.34 Aligned_cols=40 Identities=20% Similarity=0.392 Sum_probs=27.1
Q ss_pred eecCCCCEEEEEEEEEeCC--CCCeEEEEEEEEEEecccccc
Q 023569 230 VRVSEGDDLNVSFSMTRSK--ENHRLLEVEFSCEIRESTGQI 269 (280)
Q Consensus 230 ~~V~~Gd~i~~~~~~~~~~--~~~r~~~i~~~~~~~~~~~~~ 269 (280)
-+|.+||+|+.+.++.... .+.+.-.+.++..+.+++|+.
T Consensus 87 ~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq~g~~ 128 (142)
T cd03452 87 EPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTNQNGEL 128 (142)
T ss_pred CCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEecCCCE
Confidence 3467899999888776542 222223478888888888875
No 224
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=35.14 E-value=91 Score=25.58 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=31.0
Q ss_pred eecCCCCEEEEEEEEEeCCCCCeEEEEEEEEEEecccccc
Q 023569 230 VRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQI 269 (280)
Q Consensus 230 ~~V~~Gd~i~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~ 269 (280)
.++.+|+.++...++.-.. |.-.+.+.++|++..++|+.
T Consensus 108 CPl~age~ytY~~slpI~~-~yP~v~v~iew~L~D~d~~~ 146 (158)
T KOG4063|consen 108 CPLSAGEDYTYLNSLPITE-NYPEVSVIIEWQLQDQDNEK 146 (158)
T ss_pred CcccCCCceEEEEEeeccc-cCCceeEEEEEEEecCCCCe
Confidence 4567899999888877654 35678899999999999873
No 225
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=34.92 E-value=40 Score=29.10 Aligned_cols=53 Identities=25% Similarity=0.276 Sum_probs=31.0
Q ss_pred EEEEeccccccc--------CC-CcccEEEecCCCcc-cCC---Cc----cHHHHHHHHhcccCCCeEEE
Q 023569 18 VEVIEGSVEDIV--------LP-EKVDVIISEWMGYF-LLR---ES----MFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 18 i~vi~~~~~~~~--------l~-~~~DvivsE~~g~~-l~~---E~----~l~~~~~a~~~~L~~~g~~i 70 (280)
|.++++++++-+ ++ .++|+|+|.+.-.. ... +. ......+-...+|+|||.++
T Consensus 87 V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 87 VIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred ceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 778888877663 34 46899999985321 111 11 11222333456889988653
No 226
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=34.56 E-value=60 Score=28.37 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=35.8
Q ss_pred CeEEEEecccccccCC----CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEE
Q 023569 16 DVVEVIEGSVEDIVLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 16 ~~i~vi~~~~~~~~l~----~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
..|+++.+|..++..+ .++|.|.==. -.+.+...+-..+.....++|+|||.+
T Consensus 103 ~~i~~~~gD~f~l~~~~~~~~~fD~VyDra-~~~Alpp~~R~~Y~~~l~~lL~pgg~l 159 (226)
T PRK13256 103 DDIEIYVADIFNLPKIANNLPVFDIWYDRG-AYIALPNDLRTNYAKMMLEVCSNNTQI 159 (226)
T ss_pred CceEEEEccCcCCCccccccCCcCeeeeeh-hHhcCCHHHHHHHHHHHHHHhCCCcEE
Confidence 4689999999888532 4788754321 123456666666666667899999874
No 227
>COG2213 MtlA Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]
Probab=34.41 E-value=59 Score=30.95 Aligned_cols=35 Identities=26% Similarity=0.503 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEe
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIIS 39 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~Dvivs 39 (280)
|.+-|+-++.+|++| |+|.+.-+.+ ||..+|+||+
T Consensus 396 Asilrkk~k~agl~~-I~V~n~AIn~--Lp~d~d~VIT 430 (472)
T COG2213 396 ASILRKKLKNAGLND-ISVTNYAINN--LPADADLVIT 430 (472)
T ss_pred HHHHHHHHHhCCCCc-eeEeehhhhc--CCccccEEEE
Confidence 446688899999988 9999876665 6767999998
No 228
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=34.15 E-value=1.6e+02 Score=22.91 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=30.2
Q ss_pred eecCCCCEEEEEEEEEeCCCCCeEEEEEEEEEEecccccc
Q 023569 230 VRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQI 269 (280)
Q Consensus 230 ~~V~~Gd~i~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~ 269 (280)
+.+++|+..++++.+...++....+.+.+.=...+..|.+
T Consensus 21 L~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I 60 (121)
T PF06030_consen 21 LKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVI 60 (121)
T ss_pred EEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEE
Confidence 6788999999999999988866655555555667777765
No 229
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=33.84 E-value=37 Score=30.57 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=26.8
Q ss_pred EEEecccccccCCCcccEEEecCCC--------cccCCCccHHHHHHHHhcccCCCeEE
Q 023569 19 EVIEGSVEDIVLPEKVDVIISEWMG--------YFLLRESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 19 ~vi~~~~~~~~l~~~~DvivsE~~g--------~~l~~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
..+-+|.+.+..|.++|+|||.+-+ .....|+..+.+..--+.-|+-||.+
T Consensus 107 ~~~~~Dc~t~~~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSv 165 (299)
T PF06460_consen 107 QSIVGDCRTYMPPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSV 165 (299)
T ss_dssp EEEES-GGGEEESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEE
T ss_pred CceeccccccCCCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceE
Confidence 3455666666678999999999863 22334666666655444556777755
No 230
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=33.82 E-value=1.7e+02 Score=28.53 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=53.0
Q ss_pred ccccceeeeEEEEEEecCceEEEEEEEecceeccc-cCC----CCCCcEEEecCCCCCCCCCeeeeEEeeCCeeecCCCC
Q 023569 162 DDIREVRSKFLSSIRGEGTRLCGFSGWFDVHFRGS-TED----PAQQEIELTTAPSTYNGTHWGQQVFLFRPSVRVSEGD 236 (280)
Q Consensus 162 ~dl~~~~~~~~~~~~~~~g~~~g~~~wfd~~l~~~-~~~----~~~~~v~lST~P~~~~~thW~Q~v~~l~~p~~V~~Gd 236 (280)
++...++.+....+. .+|.+|=|+.+=..+--+- ..+ +..++....-++ ...||-|.+.+++..+.|..||
T Consensus 213 ~~~~~f~~~tsc~v~-~n~~ihvfa~r~hTh~Lgk~vsG~lv~q~~~g~w~~ig~---r~Pq~pqlf~~v~~~~~iadgD 288 (501)
T KOG3567|consen 213 EGTKHFETPTSCAVE-ENGPIHVFAYRCHTHILGKVVSGYLVAQKHEGHWTLIGR---RDPQLPQLFEPVNHIVCVADGD 288 (501)
T ss_pred CCccccCCCceEEEe-cCcceeeEEeeeeehhhcceeeeeEeeeccCcceeeccc---cCCCchhhhcCCCcceeeecCC
Confidence 344355555666666 7777777765543332110 000 001122233333 2469999999999899999999
Q ss_pred EEEEEEEEEeCCCCCe
Q 023569 237 DLNVSFSMTRSKENHR 252 (280)
Q Consensus 237 ~i~~~~~~~~~~~~~r 252 (280)
.+.++..+.....+++
T Consensus 289 ~~~vrC~~~s~~~~rt 304 (501)
T KOG3567|consen 289 NQRVRCFFQSLGRNRT 304 (501)
T ss_pred ceEEEEEEccCCcCce
Confidence 9999988887655444
No 231
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=30.73 E-value=57 Score=24.21 Aligned_cols=39 Identities=8% Similarity=0.164 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHcCCCCeEEEEeccccccc-CCCcccEEEecC
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIISEW 41 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~-l~~~~DvivsE~ 41 (280)
|++..++.++.+|++ +++.+.+..++. ....+|+|+.-+
T Consensus 15 ~~~ki~~~~~~~~~~--~~v~~~~~~~~~~~~~~~Diil~~P 54 (96)
T cd05564 15 LVKKMKKAAEKRGID--AEIEAVPESELEEYIDDADVVLLGP 54 (96)
T ss_pred HHHHHHHHHHHCCCc--eEEEEecHHHHHHhcCCCCEEEECh
Confidence 467888999999996 788888887775 336799999865
No 232
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=30.56 E-value=1.2e+02 Score=22.63 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=26.3
Q ss_pred eecCCCCEEEEEEEEEeCCCCCeEEEEEEEEEEecccccc
Q 023569 230 VRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQI 269 (280)
Q Consensus 230 ~~V~~Gd~i~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~~ 269 (280)
-+|.+||+|+++.++.......+.-.+.++..+.++.|+.
T Consensus 79 ~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~~g~~ 118 (127)
T cd03441 79 APVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARNQGGEV 118 (127)
T ss_pred CCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEeCCCCE
Confidence 4567899999988877654322222367777777776654
No 233
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=30.48 E-value=1e+02 Score=25.22 Aligned_cols=41 Identities=10% Similarity=0.211 Sum_probs=28.1
Q ss_pred eecCCCCEEEEEEEEEeC-CCCCeEEEEEEEEEEeccccccCC
Q 023569 230 VRVSEGDDLNVSFSMTRS-KENHRLLEVEFSCEIRESTGQILP 271 (280)
Q Consensus 230 ~~V~~Gd~i~~~~~~~~~-~~~~r~~~i~~~~~~~~~~~~~~~ 271 (280)
-+|.+||+|..++.+... ....+.+ +.+...+.+++|+.+.
T Consensus 95 ~PV~~GDtL~~~~eV~~~~~~~~~gi-v~~~~~v~Nq~Ge~V~ 136 (159)
T PRK13692 95 KPIVAGDKLYCDVYVDSVREAHGTQI-IVTKNIVTNEEGDVVQ 136 (159)
T ss_pred CCccCCCEEEEEEEEEEEEEcCCceE-EEEEEEEEcCCCCEEE
Confidence 448899999988887521 1122333 7888888899988643
No 234
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=30.00 E-value=92 Score=28.03 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCCeEEEEeccccccc---CCCcccEEEecCC--CcccCCC----------c-------cHHHHHHHHhc
Q 023569 4 HARTLVKANNLQDVVEVIEGSVEDIV---LPEKVDVIISEWM--GYFLLRE----------S-------MFDSVICARDR 61 (280)
Q Consensus 4 ~A~~~i~~Ngl~~~i~vi~~~~~~~~---l~~~~DvivsE~~--g~~l~~E----------~-------~l~~~~~a~~~ 61 (280)
..+.+++.-|..+ |.++..+.+... .+..+|.|+.+.. |.+.+.. . ....++....+
T Consensus 125 ~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 203 (283)
T PF01189_consen 125 RLKENLKRLGVFN-VIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAK 203 (283)
T ss_dssp HHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCce-EEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHH
Confidence 4566777788877 677777877773 2356999999886 4443442 1 11234555567
Q ss_pred cc----CCCeEEEcccce
Q 023569 62 WL----KPTGVMYPSHAR 75 (280)
Q Consensus 62 ~L----~~~g~~iP~~a~ 75 (280)
++ ||||+++=+.++
T Consensus 204 ~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 204 LLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp CEHHHBEEEEEEEEEESH
T ss_pred hhcccccCCCeEEEEecc
Confidence 88 999988644333
No 235
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=29.67 E-value=1.5e+02 Score=19.28 Aligned_cols=22 Identities=9% Similarity=0.341 Sum_probs=17.5
Q ss_pred eecCCCCEEEEEEEEEeCCCCC
Q 023569 230 VRVSEGDDLNVSFSMTRSKENH 251 (280)
Q Consensus 230 ~~V~~Gd~i~~~~~~~~~~~~~ 251 (280)
..+++||+|.++++......+.
T Consensus 7 akaK~Ge~I~ltVt~kda~G~p 28 (47)
T PF05688_consen 7 AKAKVGETIPLTVTVKDANGNP 28 (47)
T ss_pred hheecCCeEEEEEEEECCCCCC
Confidence 4688999999999988775443
No 236
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.37 E-value=2.2e+02 Score=24.31 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=22.5
Q ss_pred CcccEEEecCCCcccCCCccH-HHHHHHHhcccCCCeEEE
Q 023569 32 EKVDVIISEWMGYFLLRESMF-DSVICARDRWLKPTGVMY 70 (280)
Q Consensus 32 ~~~DvivsE~~g~~l~~E~~l-~~~~~a~~~~L~~~g~~i 70 (280)
.++|+||..+. .++|.|+ .+-..+ +++++++-++|
T Consensus 134 ~~fdiivaDPP---fL~~eCl~Kts~ti-k~L~r~~~kvi 169 (217)
T KOG3350|consen 134 AHFDIIVADPP---FLSEECLAKTSETI-KRLQRNQKKVI 169 (217)
T ss_pred hcccEEEeCCc---cccchhhhhhHHHH-HHHhcCCceEE
Confidence 68999999985 3455554 444443 46777765443
No 237
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=28.64 E-value=1.2e+02 Score=25.70 Aligned_cols=66 Identities=20% Similarity=0.309 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCCeEEEEecccccc-c--CC-CcccEEEecCCCcccCCC----c-cHHHHHHHHhcccCCCeEE
Q 023569 3 DHARTLVKANNLQDVVEVIEGSVEDI-V--LP-EKVDVIISEWMGYFLLRE----S-MFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 3 ~~A~~~i~~Ngl~~~i~vi~~~~~~~-~--l~-~~~DvivsE~~g~~l~~E----~-~l~~~~~a~~~~L~~~g~~ 69 (280)
..|.+-+...++.| +.+++++...+ . ++ +.+|-|.-.-.+.-.=.. . +-+.++....+.|+|||.+
T Consensus 55 ~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l 129 (195)
T PF02390_consen 55 AKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGEL 129 (195)
T ss_dssp HHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEE
T ss_pred HHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEE
Confidence 34555566668887 99999998884 2 33 666666554333211111 1 1244444556789999965
No 238
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=28.42 E-value=26 Score=28.85 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=18.7
Q ss_pred CcccEEEecCCCcc----cCCC-----ccHHHHHHHHhcccCCCeEE
Q 023569 32 EKVDVIISEWMGYF----LLRE-----SMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 32 ~~~DvivsE~~g~~----l~~E-----~~l~~~~~a~~~~L~~~g~~ 69 (280)
+++|+|+|...-.. -..+ -++..+. ..-.+|+|||.+
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~-~a~~~L~~gG~~ 135 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLL-LALELLKPGGTF 135 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHH-HHHHHHCTTEEE
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHH-HHHhhhcCCCEE
Confidence 58999999972111 1112 2233333 334679999974
No 239
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=28.30 E-value=1.1e+02 Score=23.59 Aligned_cols=38 Identities=11% Similarity=0.119 Sum_probs=25.6
Q ss_pred ecCCCCEEEEEEEEEeCC-CCCeEEEEEEEEEEecccccc
Q 023569 231 RVSEGDDLNVSFSMTRSK-ENHRLLEVEFSCEIRESTGQI 269 (280)
Q Consensus 231 ~V~~Gd~i~~~~~~~~~~-~~~r~~~i~~~~~~~~~~~~~ 269 (280)
+|.+||+|.++.++.... .+.+.+ +.++..+.++.|+.
T Consensus 80 Pv~~Gdtl~~~~~v~~~~~~~~~~~-v~~~~~~~nq~g~~ 118 (127)
T cd03453 80 PVPVPDTLTCTGIVVEKTVADGEDA-LTVTVDATDQAGGK 118 (127)
T ss_pred cCcCCCEEEEEEEEEEEEecCCCcE-EEEEEEEEEcCCCE
Confidence 467899999988775321 112222 78888888888875
No 240
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=28.19 E-value=1.5e+02 Score=23.04 Aligned_cols=39 Identities=18% Similarity=0.089 Sum_probs=26.6
Q ss_pred ecCCCCEEEEEEEEEeCCC---CCeEEEEEEEEEEecccccc
Q 023569 231 RVSEGDDLNVSFSMTRSKE---NHRLLEVEFSCEIRESTGQI 269 (280)
Q Consensus 231 ~V~~Gd~i~~~~~~~~~~~---~~r~~~i~~~~~~~~~~~~~ 269 (280)
+|.+||+|.++.++..... ..+.--+.+...+.+++|+.
T Consensus 91 pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq~g~~ 132 (146)
T cd03451 91 PVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQDGEP 132 (146)
T ss_pred CCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECCCCCE
Confidence 4578999999887764332 12223478888888888875
No 241
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=27.87 E-value=59 Score=31.88 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=29.1
Q ss_pred CCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 30 LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 30 l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
.|...|+|=+.-+-+....-..++.++..-||.|+|+|.+|
T Consensus 424 YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~i 464 (506)
T PF03141_consen 424 YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVI 464 (506)
T ss_pred CCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEE
Confidence 46778887776554444444456778888899999999765
No 242
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=27.19 E-value=85 Score=23.21 Aligned_cols=38 Identities=24% Similarity=0.414 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCCCeEEEEeccccccc-CCCcccEEEecC
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIV-LPEKVDVIISEW 41 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~-l~~~~DvivsE~ 41 (280)
+...++.++.+|++ +++.+.+..++. ....+|+|++-.
T Consensus 20 ~~ki~~~l~~~gi~--~~v~~~~~~e~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 20 AEEIKELCQSHNIP--VELIQCRVNEIETYMDGVHLICTTA 58 (94)
T ss_pred HHHHHHHHHHCCCe--EEEEEecHHHHhhhcCCCCEEEECC
Confidence 46677888999995 788887877764 226789998864
No 243
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=26.15 E-value=1.2e+02 Score=24.94 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=26.4
Q ss_pred eecCCCCEEEEEEEEEeCCCC-CeEEEEEEEEEEecccccc
Q 023569 230 VRVSEGDDLNVSFSMTRSKEN-HRLLEVEFSCEIRESTGQI 269 (280)
Q Consensus 230 ~~V~~Gd~i~~~~~~~~~~~~-~r~~~i~~~~~~~~~~~~~ 269 (280)
-+|.+||+|..+.++....+. .+.+ +.+...+.++.|+.
T Consensus 95 rPV~~GDtL~~~~~V~~~~~~~~~g~-V~~~~~~~NQ~Ge~ 134 (166)
T PRK13691 95 KPVLAGDKLWARMDIHSVDERFGADI-VVTRNVCTNDDGEL 134 (166)
T ss_pred CCcCCCCEEEEEEEEEEEEEcCCCcE-EEEEEEEECCCCCE
Confidence 456899999998876633222 2233 77888888888875
No 244
>PF04254 DUF432: Protein of unknown function (DUF432); InterPro: IPR007366 This is an archaeal protein of unknown function.
Probab=26.15 E-value=1.9e+02 Score=22.66 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=17.8
Q ss_pred eEEeeCCeeecCCCCEEEEEEE
Q 023569 222 QVFLFRPSVRVSEGDDLNVSFS 243 (280)
Q Consensus 222 ~v~~l~~p~~V~~Gd~i~~~~~ 243 (280)
.+.-|++|+.|.+|+.+++.++
T Consensus 13 l~i~f~~pi~v~P~~~~~iyv~ 34 (123)
T PF04254_consen 13 LLIRFEEPIVVPPGSSVTIYVS 34 (123)
T ss_pred EEEEcCCCEEECCCCcEEEEEE
Confidence 4566789999999999888764
No 245
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=25.79 E-value=36 Score=30.30 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=19.1
Q ss_pred CCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeE
Q 023569 31 PEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGV 68 (280)
Q Consensus 31 ~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~ 68 (280)
+++||+|++----... -++.+.....|.||++|-
T Consensus 98 e~SVDlI~~Aqa~HWF----dle~fy~~~~rvLRk~Gg 131 (261)
T KOG3010|consen 98 EESVDLITAAQAVHWF----DLERFYKEAYRVLRKDGG 131 (261)
T ss_pred CcceeeehhhhhHHhh----chHHHHHHHHHHcCCCCC
Confidence 4899999883211111 134444445688887663
No 246
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.78 E-value=52 Score=27.62 Aligned_cols=34 Identities=21% Similarity=0.411 Sum_probs=26.0
Q ss_pred CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeE
Q 023569 32 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGV 68 (280)
Q Consensus 32 ~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~ 68 (280)
..+|+|++- .|++....-+++.++-.++|+|.|+
T Consensus 102 ~tFDiIlaA---DClFfdE~h~sLvdtIk~lL~p~g~ 135 (201)
T KOG3201|consen 102 HTFDIILAA---DCLFFDEHHESLVDTIKSLLRPSGR 135 (201)
T ss_pred CcccEEEec---cchhHHHHHHHHHHHHHHHhCcccc
Confidence 589999983 4566665666677777889999886
No 247
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=24.85 E-value=1.8e+02 Score=22.55 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=26.7
Q ss_pred ecCCCCEEEEEEEEEeCCC----CCeEEEEEEEEEEecccccc
Q 023569 231 RVSEGDDLNVSFSMTRSKE----NHRLLEVEFSCEIRESTGQI 269 (280)
Q Consensus 231 ~V~~Gd~i~~~~~~~~~~~----~~r~~~i~~~~~~~~~~~~~ 269 (280)
+|.+||+|..+.++..... ..+.+ +++...+.+++|+.
T Consensus 88 pv~~Gd~l~~~~~v~~~~~~~~~~~~~~-v~~~~~~~nq~g~~ 129 (140)
T cd03454 88 PVRPGDTLSVEVEVLDKRPSRSRPDRGI-VTLRSETLNQRGEV 129 (140)
T ss_pred CCCCCCEEEEEEEEEEEeecCCCCCCeE-EEEEEEEEcCCCCE
Confidence 4567999999888864331 23334 78888888888875
No 248
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=24.76 E-value=77 Score=27.31 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=37.3
Q ss_pred HHHHHcCCCCeEEEEeccccccc---------CCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 7 TLVKANNLQDVVEVIEGSVEDIV---------LPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 7 ~~i~~Ngl~~~i~vi~~~~~~~~---------l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
..+.+.++++.-.-+.-|+..-. .++.+|.|+|=-|=....++.+.- +.....++|++||.++
T Consensus 67 a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~-lf~~a~~~L~~gG~L~ 138 (204)
T PF06080_consen 67 AWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEG-LFAGAARLLKPGGLLF 138 (204)
T ss_pred HHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHH-HHHHHHHhCCCCCEEE
Confidence 34556677664333333433331 125899999976666666665543 3333457999999876
No 249
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=24.75 E-value=1.6e+02 Score=25.55 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCc-cHHHHHHHHhcccCCCeEE
Q 023569 3 DHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRES-MFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 3 ~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~-~l~~~~~a~~~~L~~~g~~ 69 (280)
+..+.++++||.+ |.+++.+.-. -|..+|+|+. | -++++. .-..++.-.+++...|..+
T Consensus 116 ~ai~lNa~angv~--i~~~~~d~~g--~~~~~Dl~La---g-Dlfy~~~~a~~l~~~~~~l~~~g~~v 175 (218)
T COG3897 116 QAIRLNAAANGVS--ILFTHADLIG--SPPAFDLLLA---G-DLFYNHTEADRLIPWKDRLAEAGAAV 175 (218)
T ss_pred HHhhcchhhccce--eEEeeccccC--CCcceeEEEe---e-ceecCchHHHHHHHHHHHHHhCCCEE
Confidence 4567778888864 7777766544 4578999886 2 344543 3344443334444444443
No 250
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=24.74 E-value=2.3e+02 Score=19.59 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=24.3
Q ss_pred eCCeeecCCCCEEEEEEEEEeCCCCCeEEEEEEEEEEecc
Q 023569 226 FRPSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRES 265 (280)
Q Consensus 226 l~~p~~V~~Gd~i~~~~~~~~~~~~~r~~~i~~~~~~~~~ 265 (280)
....+.+..|+.+++++.+...+. ..+.|..++.
T Consensus 6 ~~~~~~v~~G~~~~l~c~~~~~p~------~~v~W~~~~~ 39 (90)
T PF07679_consen 6 KPKDVTVKEGESVTLECEVSGNPP------PTVTWYKNGR 39 (90)
T ss_dssp ESSEEEEETTSEEEEEEEEEESSS------SEEEEEETTE
T ss_pred ecCCEEEeCCCEEEEEEEEEeCCC------Cccccccccc
Confidence 346789999999999888876533 3566666533
No 251
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=24.63 E-value=47 Score=27.78 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=20.8
Q ss_pred ccEEEecCCCcccCC-------------C---ccHHHHHHHHhcccCCCeEEE
Q 023569 34 VDVIISEWMGYFLLR-------------E---SMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 34 ~DvivsE~~g~~l~~-------------E---~~l~~~~~a~~~~L~~~g~~i 70 (280)
||+|++.|.-..... + ..+..++....|+|||||.++
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~ 53 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIF 53 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence 578888886332222 1 233445566678999999765
No 252
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=24.27 E-value=1.4e+02 Score=21.58 Aligned_cols=28 Identities=11% Similarity=0.283 Sum_probs=18.8
Q ss_pred CeeecCCCCEEEEEEEEEeCCCCCeEEEEEE
Q 023569 228 PSVRVSEGDDLNVSFSMTRSKENHRLLEVEF 258 (280)
Q Consensus 228 ~p~~V~~Gd~i~~~~~~~~~~~~~r~~~i~~ 258 (280)
..+.|.+|++++..+.+... +.+||+++
T Consensus 49 ~~~~v~ag~~~~~~w~l~~s---~gwYDl~v 76 (89)
T PF05506_consen 49 WTYTVAAGQTVSLTWPLAAS---GGWYDLTV 76 (89)
T ss_pred EEEEECCCCEEEEEEeecCC---CCcEEEEE
Confidence 35778899999998877443 33555444
No 253
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=23.48 E-value=52 Score=30.50 Aligned_cols=60 Identities=23% Similarity=0.383 Sum_probs=40.9
Q ss_pred eEEEEeccccccc----C-C--CcccEEEecC-CCcccCCCccHHHHHHHHhcccCCCeEEE---cccceE
Q 023569 17 VVEVIEGSVEDIV----L-P--EKVDVIISEW-MGYFLLRESMFDSVICARDRWLKPTGVMY---PSHARM 76 (280)
Q Consensus 17 ~i~vi~~~~~~~~----l-~--~~~DvivsE~-~g~~l~~E~~l~~~~~a~~~~L~~~g~~i---P~~a~l 76 (280)
...++.++..... + + .++|+|=+=- |.++.-.|.....++......|+|||.+| |++-.+
T Consensus 122 ~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 122 IAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp EEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred hhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 4566777665442 2 2 4899998865 56777778888878887789999999764 555444
No 254
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=23.47 E-value=2.6e+02 Score=21.68 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=29.4
Q ss_pred CeeecCCCCEEEEEEEEEeCCCCCeEEEEEEEEEEeccc
Q 023569 228 PSVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIREST 266 (280)
Q Consensus 228 ~p~~V~~Gd~i~~~~~~~~~~~~~r~~~i~~~~~~~~~~ 266 (280)
.|-.+++|+.+++++.+..+.+ ...+...+.+.+.+-.
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~-~~~~~~~v~~~~~gv~ 59 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFD-STSLKTEVHAILLGVP 59 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcc-cceeEEEEEEEECCEE
Confidence 5888999999999999987765 5566777777766533
No 255
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=23.21 E-value=66 Score=28.65 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=22.3
Q ss_pred CeEEEEecccccccCCCc-ccEEEecCC
Q 023569 16 DVVEVIEGSVEDIVLPEK-VDVIISEWM 42 (280)
Q Consensus 16 ~~i~vi~~~~~~~~l~~~-~DvivsE~~ 42 (280)
++++++++|..+++++.. .|.||+++.
T Consensus 87 ~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 87 DNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred CceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 579999999999877643 699999975
No 256
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=22.61 E-value=1.6e+02 Score=22.89 Aligned_cols=29 Identities=17% Similarity=0.400 Sum_probs=21.0
Q ss_pred EEEEecccccccCCCcccEEEecCCCcccCCCc
Q 023569 18 VEVIEGSVEDIVLPEKVDVIISEWMGYFLLRES 50 (280)
Q Consensus 18 i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~ 50 (280)
|++++||+.++ ++|+||+-.=..+..+.+
T Consensus 2 i~i~~GdI~~~----~~DaIVn~~N~~~~~g~G 30 (133)
T cd03330 2 LEVVQGDITKV----DADAIVNAANSRLRMGGG 30 (133)
T ss_pred EEEEEcccccc----cCCEEEeCCCCCCCCCCc
Confidence 78899998875 789999976444444443
No 257
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=22.61 E-value=1.3e+02 Score=25.82 Aligned_cols=60 Identities=18% Similarity=0.125 Sum_probs=32.3
Q ss_pred HHHHHcCCC-CeEEEEecccccccCC----CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 7 TLVKANNLQ-DVVEVIEGSVEDIVLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 7 ~~i~~Ngl~-~~i~vi~~~~~~~~l~----~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
+.++..|.. .+|++.+++..+-+.. ..+|||..+- ..+.+.....+. .+-.-||+|.++|
T Consensus 91 ~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn---~~F~~~l~~~L~-~~~~~lk~G~~II 155 (205)
T PF08123_consen 91 KRMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNN---TCFDPDLNLALA-ELLLELKPGARII 155 (205)
T ss_dssp HHHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE-----TTT-HHHHHHHH-HHHTTS-TT-EEE
T ss_pred HHHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEec---cccCHHHHHHHH-HHHhcCCCCCEEE
Confidence 344556663 6799999987655421 5689999864 345555555443 3335579998887
No 258
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=22.24 E-value=2.5e+02 Score=21.20 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=26.8
Q ss_pred eeecCCCCEEEEEEEEEeCCCCCeEEEEEEEEEEeccccc
Q 023569 229 SVRVSEGDDLNVSFSMTRSKENHRLLEVEFSCEIRESTGQ 268 (280)
Q Consensus 229 p~~V~~Gd~i~~~~~~~~~~~~~r~~~i~~~~~~~~~~~~ 268 (280)
..++++|+.+..+.++.-...-. ...+.++|++..++|.
T Consensus 71 ~CPl~~G~~~~~~~~~~v~~~~P-~~~~~v~~~l~d~~~~ 109 (118)
T smart00737 71 KCPIEKGETVNYTNSLTVPGIFP-PGKYTVKWELTDEDGE 109 (118)
T ss_pred CCCCCCCeeEEEEEeeEccccCC-CeEEEEEEEEEcCCCC
Confidence 46788999888777665443322 3468888888877655
No 259
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=22.07 E-value=35 Score=30.35 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=33.4
Q ss_pred HHHHHcCC-CCeEEEEecccccccCC----CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEcccc
Q 023569 7 TLVKANNL-QDVVEVIEGSVEDIVLP----EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHA 74 (280)
Q Consensus 7 ~~i~~Ngl-~~~i~vi~~~~~~~~l~----~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP~~a 74 (280)
++++..|+ .++|++++|...+- || +++-++--. +=++|.....+.+.. ..|.|||+|+=+-+
T Consensus 147 ~n~~~~gl~~~~v~~vkG~F~dT-Lp~~p~~~IAll~lD----~DlYesT~~aLe~ly-prl~~GGiIi~DDY 213 (248)
T PF05711_consen 147 ENFARYGLLDDNVRFVKGWFPDT-LPDAPIERIALLHLD----CDLYESTKDALEFLY-PRLSPGGIIIFDDY 213 (248)
T ss_dssp HCCCCTTTSSTTEEEEES-HHHH-CCC-TT--EEEEEE-------SHHHHHHHHHHHG-GGEEEEEEEEESST
T ss_pred HHHHHcCCCcccEEEECCcchhh-hccCCCccEEEEEEe----ccchHHHHHHHHHHH-hhcCCCeEEEEeCC
Confidence 33334454 57899999998663 44 333222221 235677766655544 44789997764433
No 260
>PF00963 Cohesin: Cohesin domain; InterPro: IPR002102 Cohesin domains interact with a complementary domain, termed the dockerin domain (see IPR002105 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The scaffoldin component of the cellulolytic bacterium Clostridium thermocellum is a non-hydrolytic protein which organises the hydrolytic enzymes in a large complex, called the cellulosome. Scaffoldin comprises a series of functional domains, amongst which is a single cellulose-binding domain and nine cohesin domains which are responsible for integrating the individual enzymatic subunits into the complex.; GO: 0030246 carbohydrate binding, 0000272 polysaccharide catabolic process; PDB: 2BM3_A 3P0D_I 3KCP_A 2B59_A 3L8Q_B 3FNK_C 3GHP_B 2CCL_A 1ANU_A 1OHZ_A ....
Probab=21.90 E-value=1.9e+02 Score=22.60 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=22.7
Q ss_pred eecCCCCEEEEEEEEEeCCCCCeEEEEEEEE
Q 023569 230 VRVSEGDDLNVSFSMTRSKENHRLLEVEFSC 260 (280)
Q Consensus 230 ~~V~~Gd~i~~~~~~~~~~~~~r~~~i~~~~ 260 (280)
..+++|+++++.+.+....+.-+.+++.+.|
T Consensus 8 ~~a~~G~tv~V~V~v~~~~~~i~~~~~~l~y 38 (141)
T PF00963_consen 8 VSAKPGETVTVPVNVSNVSNSIAGMQFTLSY 38 (141)
T ss_dssp CEE-TTSEEEEEEEEESCTTTEEEEEEEEEE
T ss_pred ceECCCCEEEEEEEEEcCCCcEEEEEEEEEe
Confidence 5679999999999988876545666666665
No 261
>PF14469 AKAP28: 28 kDa A-kinase anchor
Probab=21.76 E-value=2.7e+02 Score=21.95 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=24.2
Q ss_pred CEEEEEEEEEeCCCCCeEEEEEEEEEEeccc
Q 023569 236 DDLNVSFSMTRSKENHRLLEVEFSCEIREST 266 (280)
Q Consensus 236 d~i~~~~~~~~~~~~~r~~~i~~~~~~~~~~ 266 (280)
-+.++.|.+..+....+++.|.+.+.+++..
T Consensus 65 atA~VyF~i~vsk~kp~~~pv~v~y~fE~~~ 95 (122)
T PF14469_consen 65 ATASVYFTIKVSKIKPPHYPVDVTYRFEGQR 95 (122)
T ss_pred EEEEEEEEEEecccCccccceEEEEEEcCce
Confidence 3666777777777777888899999988876
No 262
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=21.74 E-value=91 Score=24.48 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=30.8
Q ss_pred eEEEEecccccc--cCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEEc
Q 023569 17 VVEVIEGSVEDI--VLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYP 71 (280)
Q Consensus 17 ~i~vi~~~~~~~--~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~iP 71 (280)
++++.-||.++. .+..++|++.-..+...---|..-+.+...-.++++|||.+.=
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 456677777664 3568999999887643222222224455555678999987653
No 263
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=20.64 E-value=1.5e+02 Score=26.01 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=21.1
Q ss_pred CcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEEE
Q 023569 32 EKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMY 70 (280)
Q Consensus 32 ~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~i 70 (280)
+.||+|.+..- .-.....+..-.+.|||+||.++
T Consensus 142 ~~VDvI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 142 EMVDVIFQDVA-----QPDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp --EEEEEEE-S-----STTHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccEEEecCC-----ChHHHHHHHHHHHhhccCCcEEE
Confidence 79999999752 22344444445568999999654
No 264
>PRK12459 S-adenosylmethionine synthetase; Provisional
Probab=20.54 E-value=89 Score=29.58 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEecCCCcccCCCccHHHHHHHHhcccCCCeEE
Q 023569 1 MSDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVM 69 (280)
Q Consensus 1 ma~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE~~g~~l~~E~~l~~~~~a~~~~L~~~g~~ 69 (280)
||++..+++-++||.++++|.-.=+ +-.++++.+-| +.+|+....+..+..++.. ..=|+|+|++
T Consensus 281 ~AR~iAKniVaAGlA~~ceVQlsYA--IGva~Pvsi~V-~TfGT~~~~~~~i~~~i~~-~Fdl~P~~Ii 345 (386)
T PRK12459 281 AARYIAKNIVAAGLAKRCEVQLSYA--IGKARPVSVQV-NTFGTGTVSDEELTRAVRE-HFDLRPAGII 345 (386)
T ss_pred HHHHHHHHHHhhcCccceEEEEEEe--ecccccceEEE-EeCCCCCCCHHHHHHHHHH-HcCCCHHHHH
Confidence 5777788888889999988765322 22345555554 4678887777766655422 1236777654
No 265
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=20.49 E-value=1.8e+02 Score=20.83 Aligned_cols=35 Identities=14% Similarity=0.422 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCCCCeEEEEecccccccCCCcccEEEec
Q 023569 2 SDHARTLVKANNLQDVVEVIEGSVEDIVLPEKVDVIISE 40 (280)
Q Consensus 2 a~~A~~~i~~Ngl~~~i~vi~~~~~~~~l~~~~DvivsE 40 (280)
+...++.++.+++. .++.+.+..++. ..+|+|++-
T Consensus 18 ~~ki~~~~~~~~~~--~~v~~~~~~~~~--~~~Dliitt 52 (87)
T cd05567 18 ASVLRKKLKKAGLE--IPVTNSAIDELP--SDADLVVTH 52 (87)
T ss_pred HHHHHHHHHHCCCc--eEEEEcchhhCC--CCCCEEEEC
Confidence 44567777877876 566777777776 789999984
No 266
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.45 E-value=4.7e+02 Score=25.43 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=36.8
Q ss_pred CcEEEecCCCCCCCCCee--e--eEEeeCCeeecCCC-------------CEEEEEEEEEeCCCCCeEEEEEEEEEE
Q 023569 203 QEIELTTAPSTYNGTHWG--Q--QVFLFRPSVRVSEG-------------DDLNVSFSMTRSKENHRLLEVEFSCEI 262 (280)
Q Consensus 203 ~~v~lST~P~~~~~thW~--Q--~v~~l~~p~~V~~G-------------d~i~~~~~~~~~~~~~r~~~i~~~~~~ 262 (280)
.++.+-|.|+ --...|. - .+...++|++|+.+ ..+-+++.||++.. +..++|-++|+.
T Consensus 326 ~g~q~ktHPN-lDK~~f~s~s~iglk~~~K~FPvn~~VGvLkWR~~~~des~iPlTincWPSes-~~g~dV~iEYe~ 400 (512)
T KOG2635|consen 326 KGTQLKTHPN-LDKKVFLSSSLIGLKRPEKPFPVNSDVGVLKWRMVDEDESEIPLTINCWPSES-GNGYDVNIEYEA 400 (512)
T ss_pred cceeeeeCCC-cchhhhccccccccccCCCCCCcCCcceEEEEeecccccccCceEEEeccccC-CCCeEEEEEEee
Confidence 3577888885 2333442 1 34455677777653 46778999998765 344777777766
Done!