BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023572
(280 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P87216|VIPI_SCHPO Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vip1 PE=1 SV=1
Length = 257
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 128/281 (45%), Gaps = 51/281 (18%)
Query: 6 VKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGAT 65
V V+N+S TE+ I +FFSF G + + + E TQ A + F+ +TA+LL A
Sbjct: 5 VIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGE-TQTAKIQFERPSATKTALLLQDAL 63
Query: 66 IVDLSVSISLAPDYQLPPAASALHETKNKTPNGAESALRKAED-----VVSSMLAKGFIL 120
+ + I+ + AAS T ++ G + A R+ ED ++S +L++G+ L
Sbjct: 64 LGQNKIQIT----SEDGGAAS----TTDQGGAGGDQAARQ-EDKPRSAIISELLSRGYHL 114
Query: 121 GKDAVFKAKTFDEKHQFTS-------TASAKVASFDKKIGFSEKISVGTSVVSDRVREVD 173
+ K+ D+ + +S +A + V S +++ +EK EVD
Sbjct: 115 SDVTLEKSIQLDQSYGVSSKFKGILESALSGVRSVNERYHVTEK-----------ANEVD 163
Query: 174 QKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVAGAFNKVAQAAGEVGQKAKE 233
KF +S+K + SS+ S ++ + T A AG + Q A E G+ +
Sbjct: 164 NKFAISDKLN--------RTSSLVSTYF-HKALETAAGTSAG---QKVQNAYEDGK--NQ 209
Query: 234 KAGMAEEEQKRKMVDDFAQVHLAESPKTSSPSGHQPSKTEP 274
G+ E R++ D Q SP +S+P+ P++ EP
Sbjct: 210 LLGIHNE--ARRLADAKNQAEGTASPASSTPTA--PAEKEP 246
>sp|Q6C2Q7|NOP12_YARLI Nucleolar protein 12 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=NOP12 PE=3 SV=1
Length = 509
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSD---NEWTQIAYVTFKDMQGAETAVL 60
+ V V + E + E FS GD+EYV + D N AYV FKD+ E A+L
Sbjct: 274 RCVFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVEQALL 333
Query: 61 LSGATIVDLSVSIS 74
L+G I +LS S +
Sbjct: 334 LNGKGINELSKSTT 347
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQI---AYVTFKDMQGAETAVLL 61
TV V N+S ATE + F GDI+ + + +D + ++ YVTF D+ A+ V +
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM 426
Query: 62 SGATIVDLSVSISLA 76
+G I + +
Sbjct: 427 NGHFIAGRPCRLDFS 441
>sp|Q08208|NOP12_YEAST Nucleolar protein 12 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP12 PE=1 SV=1
Length = 459
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSD---NEWTQIAYVTFKDMQGAETAVL 60
+++ V N+ E + + F GDIEYV + D N AYV FKD+Q A+L
Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALL 338
Query: 61 LS 62
L+
Sbjct: 339 LN 340
>sp|Q6CKV6|NOP12_KLULA Nucleolar protein 12 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=NOP12 PE=3 SV=2
Length = 462
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSD---NEWTQIAYVTFKDMQGAETAVL 60
++V V N+ E + + F GDIEYV + D N AYV FKD Q A+L
Sbjct: 297 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSKALL 356
Query: 61 LSGATI 66
L I
Sbjct: 357 LHEKKI 362
>sp|O13741|NOP12_SCHPO Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nop12 PE=1 SV=1
Length = 438
Score = 38.5 bits (88), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSD---NEWTQIAYVTFKDMQGAETAVL 60
+ V V N++ A E + +F G I+YV + D N AY+ FKD G + A+L
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 61 LS 62
L+
Sbjct: 330 LN 331
>sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7
OS=Caenorhabditis elegans GN=rsp-7 PE=3 SV=3
Length = 452
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSD------NEWTQIAYVTFKDMQGAE 56
+K + V+N+S AT I F++ G I+ +++ N + A++ F D + E
Sbjct: 9 VKILHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFIKFDDERCVE 68
Query: 57 TAVLLSGATIVDLSVSISLAPDYQLP 82
A L+ ++D ++ P+ +P
Sbjct: 69 VAQHLTNTVVIDCAIVCLPYPNPVIP 94
>sp|C4Y2Z9|SEY1_CLAL4 Protein SEY1 OS=Clavispora lusitaniae (strain ATCC 42720) GN=SEY1
PE=3 SV=1
Length = 834
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 199 AIMKNRYVFT------GASWVAGAFNKVAQAAGEVGQKAKEKAGMAEEEQKRKMVDDFAQ 252
AI++N + FT GA++V + N + A+ V + A E G+A+E+ + +VDD Q
Sbjct: 752 AILRNPFFFTLLIMLAGATYVMYSMNLLGPASIVVQRMANEALGLAKEKLREFVVDDHMQ 811
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQ---IAYVTFKDMQGAETAVL 60
+TV ++ R ++EFFS G + V M SD + IAYV F D+ A+
Sbjct: 153 RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG 212
Query: 61 LSGATIVDLSVSI 73
L+G ++ + + +
Sbjct: 213 LTGQRVLGVPIIV 225
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQ---IAYVTFKDMQGAETAVL 60
+TV ++ R ++EFFS G + V M SD + IAYV F D+ A+
Sbjct: 153 RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG 212
Query: 61 LSGATIVDLSVSI 73
L+G ++ + + +
Sbjct: 213 LTGQRVLGVPIIV 225
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQ---IAYVTFKDMQGAETAVL 60
+TV ++ R ++EFFS G + V M SD + IAYV F D+ A+
Sbjct: 153 RTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG 212
Query: 61 LSGATIVDLSVSI 73
L+G ++ + + +
Sbjct: 213 LTGQRVLGVPIIV 225
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 35.0 bits (79), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 1 MSIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSD--NEWTQIAYVTFKDMQGAETA 58
+ + VSN+ T+ +K F GDIE+V ++ D N Y+ +++ A A
Sbjct: 337 IPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNA 396
Query: 59 V-LLSGATIVDLSVSISLAPD 78
+ ++G + ++ + L D
Sbjct: 397 LEKMNGFDLAGRNMRVCLGND 417
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 4 KTVKVSNVSLGATERGIKEFFSFSG---DIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL 60
+TV VS ++ T R + +FF +G D + V K +AYV F + A+
Sbjct: 240 RTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299
Query: 61 LSGATIVDLSVSISL 75
LSG ++ L V + L
Sbjct: 300 LSGKRLLGLPVIVQL 314
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 16 TERGIKEFFSFSGDIEYVEM--KSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLS-VS 72
TE ++EFFS GD+ V++ K + E + A++ +K AE AV + +D + +
Sbjct: 14 TEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKYFNKSFIDTARIE 73
Query: 73 ISLAPDYQLPPAASALHETKNK 94
+ A + P + E + +
Sbjct: 74 VEFAKTFSDPTVPLSFKEKRKR 95
>sp|Q0W2Y2|Y987_UNCMA Uncharacterized protein UNCMA_09870 OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_09870 PE=3 SV=1
Length = 79
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 123 DAVFKAKTFDEKHQFTSTASAKVASFDKKIGFS-EKISVGTSVVSDRVREVDQK 175
DAV++A H ++ + ++A D IG +++ ++V+DR +E+DQK
Sbjct: 8 DAVYQAVV---DHIYSVVPAKRIADLDISIGIEGRDLTIDITLVTDRTQEIDQK 58
>sp|Q54WM4|EIF3G_DICDI Eukaryotic translation initiation factor 3 subunit G
OS=Dictyostelium discoideum GN=eif3G PE=3 SV=1
Length = 233
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQ--IAYVTFKDMQGAETAV- 59
+ ++ VSN+S ATE+ + E F G + V + E + AYVT+ + AE A+
Sbjct: 151 VPSIMVSNLSQNATEKDLYELFGQFGPVSRVSIPKSMEGSSKGFAYVTYNHLDSAEKALK 210
Query: 60 LLSGATIVDLSVSISLA 76
L+G L +S+ A
Sbjct: 211 QLNGHRYDYLVLSLEFA 227
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 2 SIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV 59
S +TV V N+ ER +++ FS G + +++K A+V F D + AE A+
Sbjct: 5 SSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 1 MSIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV- 59
++ T+ V+N+ TE +K+ FS G++ YV++ + + YV FK AE AV
Sbjct: 234 VTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGY---GYVQFKTRPSAEEAVQ 290
Query: 60 LLSGATIVDLSVSISLA 76
+ G I +V IS +
Sbjct: 291 RMQGQVIGQQAVRISWS 307
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQ---IAYVTFKDMQGAETAVL 60
+TV ++ R +++FFS G + V + SD + IAYV F ++Q A+
Sbjct: 166 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG 225
Query: 61 LSGATIVDLSVSI 73
L+G ++ + + +
Sbjct: 226 LTGQRLLGVPIIV 238
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSD---NEWTQIAYVTFKD 51
K V V +S +E IKE+F G+IE +E+ D NE ++T+ D
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTD 283
>sp|P13611|CSPG2_HUMAN Versican core protein OS=Homo sapiens GN=VCAN PE=1 SV=3
Length = 3396
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 184 SAFVAAEQKVSSVGSAIMKNRYVFTGASWVAGAFNKVAQAAGEVGQKAKEKAGMAEEEQK 243
SA+V+ E+ V+ +G+ + + T SWV +V + +G E +G AEE++
Sbjct: 1592 SAYVSEEEAVTLIGNP-WPDDLLSTKESWVEATPRQVVELSGSSSIPITEGSGEAEEDED 1650
Query: 244 R--KMVDDFAQ 252
MV D +Q
Sbjct: 1651 TMFTMVTDLSQ 1661
>sp|Q7Z2Y8|GVIN1_HUMAN Interferon-induced very large GTPase 1 OS=Homo sapiens GN=GVINP1 PE=2
SV=2
Length = 2422
Score = 32.7 bits (73), Expect = 2.7, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 155 SEKISVGTSVVSDRVREVDQKFQVSEKTKS--------AFVAAEQKVSSVGSAIMKNRYV 206
S +IS T + +REV Q ++ E+ S +AA+ +S V +M
Sbjct: 1400 STEISDCTLGIEQLIREVGQIYEALEEASSIKKIFFSLPQIAADLMISGVPIELMDGDAA 1459
Query: 207 FTGASWVAGAFNKVAQAAGE 226
+ +WVA F+KV++ G+
Sbjct: 1460 YVPLTWVAAVFDKVSEKLGD 1479
>sp|Q6KIP9|LDH_MYCMO L-lactate dehydrogenase OS=Mycoplasma mobile (strain ATCC 43663 /
163K / NCTC 11711) GN=ldh PE=3 SV=1
Length = 318
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 148 FDKKIGFSEKISVGTSVVSDRVR-EVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYV 206
FDK + IS GTS+ S R+R E+ +K +V K+ AFV E SSV V
Sbjct: 138 FDK----NRVISSGTSLDSARLRFEISKKLKVHPKSVQAFVLGEHGDSSVS--------V 185
Query: 207 FTGASWVAGAFNKVAQAAG 225
++ A+ +FN++ + G
Sbjct: 186 YSAATVSGKSFNEIVKERG 204
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSD---NEWTQIAYVTFKD 51
K V V +S +E IKE+F G+IE +E+ D NE ++T+ D
Sbjct: 136 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTD 186
>sp|Q9LNV5|C3H4_ARATH Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis
thaliana GN=At1g07360 PE=2 SV=1
Length = 481
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 2 SIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL- 60
SIKT+ V ++ E+ I++ F G+IE + + +D A+VT+ +GAE A
Sbjct: 226 SIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKA---CAFVTYTSREGAEKAAQE 282
Query: 61 LSGATIVD 68
LS +++
Sbjct: 283 LSNRLVIN 290
>sp|Q87TT0|ATPF_PSESM ATP synthase subunit b OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=atpF PE=3 SV=1
Length = 156
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 63 GATIVDLSVS----ISLAPDYQLPPAASALHETKNKTPNGAESALRKAEDV 109
AT++ SV+ + Y PP +ALHE + K +G ++A R A D+
Sbjct: 4 NATLIGQSVAFFIFVLFCMKYVWPPVIAALHERQKKIADGLDAASRAARDL 54
>sp|Q9XFD1|NCBP2_ARATH Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana
GN=CBP20 PE=1 SV=1
Length = 257
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEW---TQIAYVTFKDMQGAETAVLL 61
TV + NVS TE + E FS +G+I+ + M D +V F + E AV
Sbjct: 35 TVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKY 94
Query: 62 SGATIVD 68
TI+D
Sbjct: 95 ISGTILD 101
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKS--DNEWTQIAYVTFKDMQGAETAVLL 61
KT+ V N+ + +K+FF +G++ + + D + +V F + A+ A+ L
Sbjct: 449 KTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEFATAEAAKKALEL 508
Query: 62 SGATIVDLSVSISLA 76
+G ++ V + LA
Sbjct: 509 AGHDLMGRPVRLDLA 523
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSD---NEWTQIAYVTFKD 51
+K + V ++ ATE I+E+F G+IE +E+ D N+ ++TFK+
Sbjct: 158 VKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKE 209
>sp|Q13242|SRSF9_HUMAN Serine/arginine-rich splicing factor 9 OS=Homo sapiens GN=SRSF9
PE=1 SV=1
Length = 221
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 6 VKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL 60
+ V N+ E+ +++ F G I +E+K+ + A+V F+D + AE A+
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIY 70
>sp|Q8XI02|SYT_CLOPE Threonine--tRNA ligase OS=Clostridium perfringens (strain 13 / Type
A) GN=thrS PE=3 SV=1
Length = 643
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 118 FILGKDAVFKAKTFDEK---HQFTSTASAKVASFDKKIGFSEKISVGTSV 164
FI+ +D+ + TFD K H F TAS +A+ K++ +K+++G S+
Sbjct: 49 FIVNEDSSLEICTFDSKEGQHAFNHTASHVLAAAVKRLFPQDKLAIGPSI 98
>sp|Q0TMX8|SYT_CLOP1 Threonine--tRNA ligase OS=Clostridium perfringens (strain ATCC
13124 / NCTC 8237 / Type A) GN=thrS PE=3 SV=1
Length = 643
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 118 FILGKDAVFKAKTFDEK---HQFTSTASAKVASFDKKIGFSEKISVGTSV 164
FI+ +D+ + TFD K H F TAS +A+ K++ +K+++G S+
Sbjct: 49 FIVNEDSSLEICTFDSKEGQHAFNHTASHVLAAAVKRLFPQDKLAIGPSI 98
>sp|Q0SQM4|SYT_CLOPS Threonine--tRNA ligase OS=Clostridium perfringens (strain SM101 /
Type A) GN=thrS PE=3 SV=1
Length = 643
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 118 FILGKDAVFKAKTFDEK---HQFTSTASAKVASFDKKIGFSEKISVGTSV 164
FI+ +D+ + TFD K H F TAS +A+ K++ +K+++G S+
Sbjct: 49 FIVNEDSSLEICTFDSKEGQHAFNHTASHVLAAAVKRLFPQDKLAIGPSI 98
>sp|P13469|MODU_DROME DNA-binding protein modulo OS=Drosophila melanogaster GN=mod PE=1
SV=2
Length = 542
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSG 63
+ + V+N++ ATE +++ F+ SG+IE + M Q A V FKD +G L+
Sbjct: 420 RAILVTNLTSDATEADLRKVFNDSGEIESIIM-----LGQKAVVKFKDDEGF-CKSFLAN 473
Query: 64 ATIVDLSVSISLAPDYQL 81
+IV+ + I + P+ L
Sbjct: 474 ESIVN-NAPIFIEPNSLL 490
>sp|P17132|HNRPC_RAT Heterogeneous nuclear ribonucleoprotein C (Fragment) OS=Rattus
norvegicus GN=Hnrnpc PE=2 SV=1
Length = 158
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQ---IAYVTFKD 51
+K + V +S E I+E+F G++E +E+ DN+ + ++TFK+
Sbjct: 33 VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKE 84
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSD---NEWTQIAYVTFKD 51
K V V +S TE IK++F G+IE +E+ D NE +VT+ D
Sbjct: 119 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTD 169
>sp|Q5PPI1|SRSF9_RAT Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus
GN=Srsf9 PE=1 SV=1
Length = 221
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 6 VKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL 60
+ V N+ E+ +++ F G I +E+K+ + A+V F+D + AE A+
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIY 70
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSD---NEWTQIAYVTFKD 51
K V V +S +E IKE+F G+IE +E+ D NE ++T+ D
Sbjct: 115 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTD 165
>sp|Q8NEL9|DDHD1_HUMAN Phospholipase DDHD1 OS=Homo sapiens GN=DDHD1 PE=1 SV=2
Length = 900
Score = 31.6 bits (70), Expect = 7.3, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 119 ILGKDAVFKAK---------TFDEKHQFTSTASAKVA-SFDKKIGFSEKISVGTSVVSDR 168
I GKDAV K + DE + ++ ++K+A + +K+GFS+ S GT +
Sbjct: 333 IDGKDAVHSFKLSRNHVDWHSVDEVYLYSDATTSKIARTVTQKLGFSKASSSGTRLHRGY 392
Query: 169 VREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYV 206
V E + + S+ T FV V +G + + R +
Sbjct: 393 VEEATLEDKPSQTTHIVFV-----VHGIGQKMDQGRII 425
>sp|Q05519|SRS11_HUMAN Serine/arginine-rich splicing factor 11 OS=Homo sapiens GN=SRSF11
PE=1 SV=1
Length = 484
Score = 31.2 bits (69), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 6 VKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE-----WTQIAYVTFKDMQGAETAVL 60
++V+NVS A+ ++ F F G I+ + + ++ +++ +V F D A A
Sbjct: 35 IQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQH 94
Query: 61 LSGATIVD 68
L+ VD
Sbjct: 95 LTNTVFVD 102
>sp|Q9D0B0|SRSF9_MOUSE Serine/arginine-rich splicing factor 9 OS=Mus musculus GN=Srsf9
PE=1 SV=1
Length = 222
Score = 31.2 bits (69), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 6 VKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL 60
+ V N+ E+ +++ F G I +E+K+ + A+V F+D + AE A+
Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIY 71
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 31.2 bits (69), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSD---NEWTQIAYVTFKD 51
K V V +S +E IKE+F G+IE +E+ D NE ++T+ D
Sbjct: 114 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTD 164
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.124 0.329
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,598,939
Number of Sequences: 539616
Number of extensions: 3414699
Number of successful extensions: 9844
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 9814
Number of HSP's gapped (non-prelim): 90
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)