Query 023572
Match_columns 280
No_of_seqs 272 out of 1168
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:03:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03120 nucleic acid binding 100.0 1.8E-83 4E-88 589.4 24.0 258 1-261 2-259 (260)
2 PLN03121 nucleic acid binding 100.0 6.3E-75 1.4E-79 527.3 18.7 226 3-233 5-242 (243)
3 PLN03134 glycine-rich RNA-bind 99.6 2.1E-14 4.5E-19 121.9 11.6 78 2-79 33-114 (144)
4 PF00076 RRM_1: RNA recognitio 99.6 2E-14 4.3E-19 103.1 8.2 67 6-72 1-70 (70)
5 KOG0121 Nuclear cap-binding pr 99.5 4.1E-14 8.9E-19 119.5 6.9 81 1-81 34-118 (153)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 1.9E-13 4.1E-18 127.3 10.6 76 3-78 269-348 (352)
7 PF14259 RRM_6: RNA recognitio 99.4 6.5E-13 1.4E-17 96.9 8.9 67 6-72 1-70 (70)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 5.3E-13 1.1E-17 124.4 10.0 75 3-77 3-81 (352)
9 smart00362 RRM_2 RNA recogniti 99.4 3.8E-12 8.3E-17 89.1 8.8 70 5-74 1-72 (72)
10 TIGR01659 sex-lethal sex-letha 99.4 2E-12 4.4E-17 123.9 9.6 74 3-76 107-184 (346)
11 TIGR01622 SF-CC1 splicing fact 99.3 5.4E-12 1.2E-16 122.1 10.3 75 3-77 89-166 (457)
12 cd00590 RRM RRM (RNA recogniti 99.3 2.9E-11 6.2E-16 85.1 9.4 70 5-74 1-73 (74)
13 PLN03213 repressor of silencin 99.3 1E-11 2.2E-16 123.2 9.1 75 3-78 10-87 (759)
14 TIGR01622 SF-CC1 splicing fact 99.3 5.9E-11 1.3E-15 114.9 12.9 78 4-81 187-268 (457)
15 KOG0125 Ataxin 2-binding prote 99.2 1.2E-11 2.5E-16 117.6 7.4 75 4-78 97-173 (376)
16 TIGR01645 half-pint poly-U bin 99.2 1.9E-11 4.1E-16 124.9 9.5 76 4-79 108-187 (612)
17 TIGR01628 PABP-1234 polyadenyl 99.2 2.3E-11 4.9E-16 121.5 9.9 72 5-76 2-77 (562)
18 COG0724 RNA-binding proteins ( 99.2 4.3E-11 9.2E-16 101.7 9.5 74 4-77 116-193 (306)
19 smart00360 RRM RNA recognition 99.2 4.2E-11 9E-16 83.3 7.6 67 8-74 1-71 (71)
20 KOG0107 Alternative splicing f 99.2 2.3E-11 5.1E-16 107.2 7.7 74 3-78 10-84 (195)
21 TIGR01659 sex-lethal sex-letha 99.2 4.5E-11 9.8E-16 114.7 10.1 76 3-78 193-274 (346)
22 TIGR01645 half-pint poly-U bin 99.2 4.9E-11 1.1E-15 121.9 10.0 74 4-77 205-282 (612)
23 TIGR01628 PABP-1234 polyadenyl 99.2 6.7E-11 1.4E-15 118.2 10.3 75 3-77 285-362 (562)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.2 9.2E-11 2E-15 114.9 10.5 75 3-77 295-373 (509)
25 KOG0105 Alternative splicing f 99.2 6.6E-11 1.4E-15 105.6 7.0 77 4-80 7-84 (241)
26 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.9E-10 4.2E-15 113.8 10.2 73 3-77 275-349 (481)
27 TIGR01642 U2AF_lg U2 snRNP aux 99.1 1.4E-10 3.1E-15 113.5 9.2 76 3-81 175-262 (509)
28 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 2E-10 4.3E-15 113.8 9.5 72 3-77 2-76 (481)
29 TIGR01648 hnRNP-R-Q heterogene 99.1 2.4E-10 5.3E-15 116.3 9.6 69 4-77 234-305 (578)
30 TIGR01648 hnRNP-R-Q heterogene 99.1 3.5E-10 7.6E-15 115.2 8.7 74 3-76 58-135 (578)
31 KOG0148 Apoptosis-promoting RN 99.0 5.9E-10 1.3E-14 104.0 8.6 72 3-77 164-236 (321)
32 PF13893 RRM_5: RNA recognitio 99.0 1.4E-09 3E-14 76.9 7.4 54 20-75 1-55 (56)
33 KOG4207 Predicted splicing fac 99.0 4.4E-10 9.6E-15 101.6 5.7 74 4-77 14-91 (256)
34 KOG0114 Predicted RNA-binding 99.0 1.6E-09 3.6E-14 88.9 8.1 73 4-76 19-92 (124)
35 KOG0149 Predicted RNA-binding 99.0 1E-09 2.2E-14 100.5 6.9 73 5-77 14-89 (247)
36 KOG0113 U1 small nuclear ribon 99.0 2.2E-09 4.8E-14 101.2 8.6 75 4-78 102-180 (335)
37 KOG0126 Predicted RNA-binding 98.9 2.1E-10 4.5E-15 102.0 1.5 78 5-82 37-118 (219)
38 KOG0122 Translation initiation 98.9 3.9E-09 8.5E-14 97.2 8.8 74 4-77 190-267 (270)
39 KOG0108 mRNA cleavage and poly 98.9 2.7E-09 5.8E-14 105.5 8.2 77 4-80 19-99 (435)
40 KOG0130 RNA-binding protein RB 98.9 2.2E-09 4.8E-14 91.8 5.5 74 3-76 72-149 (170)
41 smart00361 RRM_1 RNA recogniti 98.9 9.1E-09 2E-13 76.5 7.2 58 17-74 2-70 (70)
42 KOG0123 Polyadenylate-binding 98.8 1.2E-08 2.6E-13 99.0 8.1 74 4-78 77-152 (369)
43 KOG0127 Nucleolar protein fibr 98.8 8.8E-09 1.9E-13 103.4 6.6 78 1-78 3-84 (678)
44 KOG0117 Heterogeneous nuclear 98.8 1.1E-08 2.4E-13 100.6 6.9 69 4-77 260-329 (506)
45 KOG4211 Splicing factor hnRNP- 98.7 1.8E-08 3.8E-13 100.0 7.2 73 4-77 11-84 (510)
46 KOG4676 Splicing factor, argin 98.7 1.1E-08 2.5E-13 99.3 5.6 79 4-82 8-92 (479)
47 KOG0127 Nucleolar protein fibr 98.7 3E-08 6.5E-13 99.7 8.3 76 3-78 292-377 (678)
48 KOG0124 Polypyrimidine tract-b 98.7 1E-08 2.2E-13 99.2 4.9 77 4-80 114-194 (544)
49 KOG4212 RNA-binding protein hn 98.7 2.9E-08 6.2E-13 97.8 7.8 75 4-78 45-123 (608)
50 KOG0131 Splicing factor 3b, su 98.7 2E-08 4.4E-13 89.3 5.4 75 3-77 9-87 (203)
51 KOG0111 Cyclophilin-type pepti 98.7 1.5E-08 3.3E-13 92.6 4.4 77 1-77 8-88 (298)
52 KOG0117 Heterogeneous nuclear 98.7 5.1E-08 1.1E-12 96.0 8.1 74 3-76 83-161 (506)
53 KOG4209 Splicing factor RNPS1, 98.6 4.3E-08 9.3E-13 89.8 6.0 76 3-78 101-179 (231)
54 KOG0145 RNA-binding protein EL 98.6 2.4E-07 5.2E-12 86.7 9.2 75 3-77 278-356 (360)
55 KOG4212 RNA-binding protein hn 98.5 2.3E-07 4.9E-12 91.6 6.5 71 3-75 536-607 (608)
56 KOG0153 Predicted RNA-binding 98.5 3.9E-07 8.5E-12 87.5 7.4 72 3-77 228-301 (377)
57 KOG0109 RNA-binding protein LA 98.4 2.6E-07 5.6E-12 87.3 5.8 122 5-134 4-135 (346)
58 KOG0415 Predicted peptidyl pro 98.4 2.7E-07 5.8E-12 89.2 5.5 74 4-77 240-317 (479)
59 KOG0123 Polyadenylate-binding 98.4 5.1E-07 1.1E-11 87.7 7.5 70 5-77 3-73 (369)
60 KOG0145 RNA-binding protein EL 98.4 6.9E-07 1.5E-11 83.6 8.0 73 5-77 43-119 (360)
61 KOG0147 Transcriptional coacti 98.4 4E-07 8.7E-12 91.4 6.2 78 6-83 281-362 (549)
62 KOG0116 RasGAP SH3 binding pro 98.4 7.2E-07 1.6E-11 88.1 7.1 75 3-77 288-365 (419)
63 KOG0110 RNA-binding protein (R 98.3 1.1E-06 2.4E-11 90.5 7.5 72 6-77 518-596 (725)
64 KOG0144 RNA-binding protein CU 98.3 6.1E-07 1.3E-11 88.4 4.8 75 3-77 124-204 (510)
65 KOG0148 Apoptosis-promoting RN 98.3 1.2E-06 2.6E-11 82.2 6.6 73 5-77 64-140 (321)
66 KOG4205 RNA-binding protein mu 98.3 5.9E-07 1.3E-11 85.7 4.6 77 3-79 6-85 (311)
67 KOG0132 RNA polymerase II C-te 98.3 1.5E-06 3.2E-11 90.4 7.4 74 3-79 421-495 (894)
68 KOG1548 Transcription elongati 98.3 2.3E-06 5.1E-11 82.3 7.4 73 5-77 136-219 (382)
69 KOG4205 RNA-binding protein mu 98.2 1.3E-06 2.9E-11 83.3 5.6 74 4-77 98-174 (311)
70 KOG0109 RNA-binding protein LA 98.2 1.1E-06 2.5E-11 83.0 4.7 70 4-78 79-149 (346)
71 KOG4206 Spliceosomal protein s 98.2 3.4E-06 7.3E-11 76.9 6.8 73 5-77 11-88 (221)
72 KOG4661 Hsp27-ERE-TATA-binding 98.2 3.4E-06 7.4E-11 85.7 6.8 77 3-79 405-485 (940)
73 KOG0124 Polypyrimidine tract-b 98.2 7.1E-06 1.5E-10 79.9 8.6 73 4-76 211-287 (544)
74 KOG0106 Alternative splicing f 98.1 2.3E-06 5E-11 77.9 4.3 68 5-77 3-71 (216)
75 KOG4454 RNA binding protein (R 98.1 9.8E-07 2.1E-11 80.8 1.5 74 4-77 10-85 (267)
76 KOG0533 RRM motif-containing p 98.1 8.4E-06 1.8E-10 75.5 7.5 74 4-77 84-160 (243)
77 KOG0131 Splicing factor 3b, su 98.1 4.2E-06 9.1E-11 74.7 4.7 74 3-76 96-174 (203)
78 KOG0144 RNA-binding protein CU 98.1 7.7E-06 1.7E-10 80.8 6.7 73 5-77 36-115 (510)
79 KOG0147 Transcriptional coacti 98.0 1.5E-06 3.3E-11 87.3 1.7 74 3-76 179-255 (549)
80 KOG4660 Protein Mei2, essentia 98.0 4.1E-06 8.9E-11 84.4 3.6 70 1-72 73-143 (549)
81 PF08777 RRM_3: RNA binding mo 98.0 1.7E-05 3.8E-10 64.4 6.2 54 3-59 1-54 (105)
82 KOG0110 RNA-binding protein (R 97.8 2.1E-05 4.6E-10 81.2 4.5 75 4-78 614-692 (725)
83 PF14605 Nup35_RRM_2: Nup53/35 97.8 5.2E-05 1.1E-09 54.5 5.1 52 4-59 2-53 (53)
84 KOG0146 RNA-binding protein ET 97.7 5.5E-05 1.2E-09 71.3 6.3 63 3-65 19-84 (371)
85 KOG4208 Nucleolar RNA-binding 97.7 7.6E-05 1.6E-09 67.7 6.8 72 5-76 51-127 (214)
86 KOG1457 RNA binding protein (c 97.7 0.00017 3.6E-09 66.6 8.3 76 3-78 34-117 (284)
87 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00029 6.3E-09 57.1 7.8 73 3-76 6-89 (100)
88 PF11608 Limkain-b1: Limkain b 97.6 0.00029 6.2E-09 56.1 7.3 67 4-77 3-75 (90)
89 KOG4211 Splicing factor hnRNP- 97.6 0.00013 2.9E-09 72.9 6.7 73 4-76 104-179 (510)
90 KOG0146 RNA-binding protein ET 97.6 8.5E-05 1.8E-09 70.1 4.8 75 2-76 284-362 (371)
91 KOG0106 Alternative splicing f 97.6 5E-05 1.1E-09 69.3 3.0 68 1-73 97-165 (216)
92 KOG1995 Conserved Zn-finger pr 97.5 6E-05 1.3E-09 72.8 3.5 75 4-78 67-153 (351)
93 KOG4210 Nuclear localization s 97.1 0.00029 6.4E-09 66.5 2.7 74 4-77 185-262 (285)
94 KOG1457 RNA binding protein (c 97.1 0.00053 1.1E-08 63.4 3.8 62 4-66 211-273 (284)
95 KOG3152 TBP-binding protein, a 96.9 0.0004 8.7E-09 64.9 1.8 66 5-70 76-157 (278)
96 PF08952 DUF1866: Domain of un 96.9 0.0038 8.3E-08 54.0 7.3 68 4-76 28-104 (146)
97 KOG0151 Predicted splicing reg 96.8 0.0029 6.3E-08 66.1 7.4 73 4-76 175-254 (877)
98 KOG1190 Polypyrimidine tract-b 96.8 0.0045 9.7E-08 61.4 8.4 72 4-77 298-371 (492)
99 KOG1855 Predicted RNA-binding 96.8 0.00086 1.9E-08 66.5 3.4 67 1-67 229-311 (484)
100 KOG4307 RNA binding protein RB 96.8 0.0036 7.8E-08 65.4 7.6 70 5-74 869-942 (944)
101 PF04059 RRM_2: RNA recognitio 96.6 0.015 3.4E-07 46.9 8.8 64 4-67 2-71 (97)
102 COG5175 MOT2 Transcriptional r 96.6 0.0043 9.3E-08 60.4 6.2 71 5-75 116-199 (480)
103 KOG0120 Splicing factor U2AF, 96.2 0.0044 9.6E-08 62.8 3.9 73 4-76 290-366 (500)
104 KOG4206 Spliceosomal protein s 95.6 0.044 9.5E-07 50.4 7.4 71 4-76 147-219 (221)
105 KOG1365 RNA-binding protein Fu 95.6 0.014 3E-07 57.7 4.5 70 5-74 163-238 (508)
106 KOG1548 Transcription elongati 95.6 0.07 1.5E-06 52.1 9.0 75 3-78 265-351 (382)
107 KOG0129 Predicted RNA-binding 95.6 0.033 7.1E-07 56.5 7.0 56 3-59 259-323 (520)
108 KOG1365 RNA-binding protein Fu 95.4 0.018 3.8E-07 57.0 4.2 73 5-77 282-360 (508)
109 KOG1190 Polypyrimidine tract-b 95.2 0.05 1.1E-06 54.1 6.6 71 4-76 415-488 (492)
110 KOG0105 Alternative splicing f 95.1 0.053 1.1E-06 49.3 6.2 61 3-67 115-176 (241)
111 KOG0128 RNA-binding protein SA 95.1 0.0018 3.8E-08 68.6 -3.9 67 4-70 668-737 (881)
112 PLN03120 nucleic acid binding 95.0 0.0097 2.1E-07 55.9 1.3 50 119-168 136-192 (260)
113 KOG0129 Predicted RNA-binding 94.9 0.055 1.2E-06 54.9 6.3 72 4-76 371-451 (520)
114 KOG0226 RNA-binding proteins [ 94.8 0.036 7.7E-07 52.2 4.2 74 3-76 190-267 (290)
115 PF10309 DUF2414: Protein of u 94.5 0.15 3.3E-06 38.1 6.3 52 4-60 6-60 (62)
116 PF15023 DUF4523: Protein of u 94.2 0.17 3.7E-06 44.2 6.8 65 5-73 88-156 (166)
117 KOG1456 Heterogeneous nuclear 94.0 0.23 5E-06 49.2 8.1 73 3-77 287-361 (494)
118 KOG4307 RNA binding protein RB 94.0 0.09 1.9E-06 55.4 5.5 69 5-76 4-74 (944)
119 PLN03121 nucleic acid binding 93.9 0.058 1.3E-06 50.3 3.6 48 116-163 146-196 (243)
120 KOG2202 U2 snRNP splicing fact 93.1 0.052 1.1E-06 50.9 2.0 62 18-79 83-148 (260)
121 KOG0120 Splicing factor U2AF, 93.0 0.27 5.9E-06 50.1 7.1 59 18-76 424-489 (500)
122 KOG4285 Mitotic phosphoprotein 93.0 0.32 7E-06 46.9 7.1 70 5-78 199-269 (350)
123 KOG1996 mRNA splicing factor [ 92.1 0.34 7.3E-06 46.8 6.0 60 17-76 300-364 (378)
124 PF03467 Smg4_UPF3: Smg-4/UPF3 92.0 0.26 5.6E-06 43.5 4.8 68 3-70 7-84 (176)
125 KOG2314 Translation initiation 91.7 0.21 4.5E-06 51.7 4.3 74 4-77 59-142 (698)
126 KOG0112 Large RNA-binding prot 91.6 0.041 8.9E-07 59.0 -0.8 72 2-73 371-445 (975)
127 KOG4849 mRNA cleavage factor I 91.3 0.17 3.7E-06 49.7 3.2 72 5-76 82-159 (498)
128 KOG0115 RNA-binding protein p5 90.9 0.25 5.3E-06 46.6 3.7 75 4-78 32-113 (275)
129 PF08675 RNA_bind: RNA binding 89.8 1.5 3.2E-05 35.1 6.6 49 6-60 12-60 (87)
130 PF07576 BRAP2: BRCA1-associat 89.7 2.2 4.8E-05 35.2 7.9 63 6-68 16-81 (110)
131 KOG2068 MOT2 transcription fac 87.6 0.23 5E-06 48.1 1.0 71 6-76 80-160 (327)
132 KOG0128 RNA-binding protein SA 86.4 0.35 7.6E-06 51.8 1.6 71 5-75 738-811 (881)
133 KOG4676 Splicing factor, argin 86.2 0.43 9.4E-06 47.5 2.0 72 3-74 52-125 (479)
134 KOG0804 Cytoplasmic Zn-finger 85.6 2.2 4.8E-05 43.2 6.6 66 3-68 74-142 (493)
135 KOG2253 U1 snRNP complex, subu 85.4 0.38 8.2E-06 50.3 1.2 67 4-76 41-108 (668)
136 KOG2135 Proteins containing th 84.8 0.47 1E-05 48.1 1.6 59 16-77 386-444 (526)
137 KOG1456 Heterogeneous nuclear 84.8 4.2 9E-05 40.7 7.9 68 7-76 126-196 (494)
138 PF04847 Calcipressin: Calcipr 84.3 3 6.5E-05 37.3 6.3 58 16-76 8-68 (184)
139 PF03468 XS: XS domain; Inter 82.3 2.3 5E-05 35.2 4.5 58 5-62 10-77 (116)
140 PF03880 DbpA: DbpA RNA bindin 82.0 5.9 0.00013 29.7 6.2 58 14-76 12-74 (74)
141 KOG2193 IGF-II mRNA-binding pr 74.5 3.1 6.7E-05 42.1 3.4 66 5-76 3-73 (584)
142 TIGR03636 L23_arch archaeal ri 71.3 12 0.00026 29.1 5.3 53 5-57 15-69 (77)
143 KOG2591 c-Mpl binding protein, 70.9 10 0.00022 39.6 6.2 51 5-59 177-229 (684)
144 KOG0112 Large RNA-binding prot 70.5 5.3 0.00012 43.6 4.2 71 4-77 456-529 (975)
145 PRK14548 50S ribosomal protein 70.3 11 0.00023 29.8 4.9 53 5-57 22-76 (84)
146 KOG4210 Nuclear localization s 70.1 2.3 5E-05 40.4 1.4 71 4-74 89-163 (285)
147 PF15513 DUF4651: Domain of un 68.2 7.7 0.00017 29.2 3.5 19 18-36 9-27 (62)
148 PF01296 Galanin: Galanin; In 67.2 1.2 2.6E-05 28.6 -0.8 26 113-138 4-29 (29)
149 KOG4008 rRNA processing protei 66.3 6.5 0.00014 37.0 3.4 62 4-65 41-121 (261)
150 PF07292 NID: Nmi/IFP 35 domai 57.4 7.8 0.00017 30.9 2.0 24 1-24 50-73 (88)
151 KOG2416 Acinus (induces apopto 49.7 15 0.00033 38.7 3.2 70 4-76 445-519 (718)
152 PTZ00191 60S ribosomal protein 45.1 66 0.0014 28.0 5.9 55 5-59 83-140 (145)
153 KOG2318 Uncharacterized conser 39.6 1.1E+02 0.0023 32.5 7.4 72 3-74 174-301 (650)
154 KOG4574 RNA-binding protein (c 38.1 24 0.00053 38.6 2.6 70 10-82 305-380 (1007)
155 PRK05738 rplW 50S ribosomal pr 37.9 68 0.0015 25.5 4.6 50 4-53 20-84 (92)
156 COG0724 RNA-binding proteins ( 36.6 70 0.0015 26.8 4.8 47 3-49 225-271 (306)
157 cd04908 ACT_Bt0572_1 N-termina 35.3 1.6E+02 0.0035 20.8 6.6 49 17-66 15-64 (66)
158 CHL00030 rpl23 ribosomal prote 32.5 78 0.0017 25.4 4.1 50 5-54 20-84 (93)
159 PF00276 Ribosomal_L23: Riboso 31.8 1E+02 0.0023 24.2 4.8 52 5-56 21-87 (91)
160 PF09707 Cas_Cas2CT1978: CRISP 31.4 83 0.0018 25.0 4.1 47 5-51 27-73 (86)
161 smart00071 Galanin Galanin. Ga 30.5 12 0.00026 30.4 -0.8 28 113-140 16-43 (103)
162 PRK12280 rplW 50S ribosomal pr 27.5 1.4E+02 0.003 26.4 5.2 36 4-39 22-59 (158)
163 cd04889 ACT_PDH-BS-like C-term 27.3 2E+02 0.0044 19.4 5.6 42 18-59 13-55 (56)
164 cd04883 ACT_AcuB C-terminal AC 25.9 2.4E+02 0.0051 19.8 6.2 52 16-67 14-69 (72)
165 KOG2891 Surface glycoprotein [ 24.0 22 0.00048 34.5 -0.5 63 4-66 150-247 (445)
166 KOG3430 Dynein light chain typ 23.5 81 0.0018 25.5 2.7 33 123-155 20-54 (90)
167 PF14160 FAM110_C: Centrosome- 22.6 47 0.001 27.7 1.3 14 15-28 18-31 (111)
168 PF02714 DUF221: Domain of unk 21.5 1E+02 0.0022 28.6 3.5 31 45-77 1-32 (325)
No 1
>PLN03120 nucleic acid binding protein; Provisional
Probab=100.00 E-value=1.8e-83 Score=589.36 Aligned_cols=258 Identities=76% Similarity=1.016 Sum_probs=239.8
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCCCC
Q 023572 1 MSIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQ 80 (280)
Q Consensus 1 Ms~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~~~ 80 (280)
|..++|||+|||+.+||++|++||++||+|++|+|+.++..++||||+|++++++++||+|||++|+|+.|+|+++.+|.
T Consensus 2 ~~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 2 MQVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCCC
Confidence 67899999999999999999999999999999999998877899999999999999999999999999999999999999
Q ss_pred CCCCcccccccCCCCCCCcccccchHHHHHHHHhhcccccCHHHHHHHHhhhhccCcchHHHHHHhhhhhccCccccccc
Q 023572 81 LPPAASALHETKNKTPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDKKIGFSEKISV 160 (280)
Q Consensus 81 ~~~~~~~~~~~~~~~~e~~~~a~~~a~~Iva~~LA~GyvL~d~ai~KA~~fDekhgvSs~~~a~v~~lD~k~g~tek~~~ 160 (280)
+|+.............++ ..+++++++||++||||||+||||||+|||+||||||||++|+++|.+||+||||||||++
T Consensus 82 ~p~~~~~~~~~~~~~~~~-~~~~~~a~~vva~mLAkGy~l~~dA~~kAk~fDekH~~ss~a~a~v~~~d~k~gltek~~~ 160 (260)
T PLN03120 82 LPPEALAPLSSNSPASGA-ESAVKKAEDVVSSMLAKGFILGKDAVNKAKAFDEKHQLTSTASAKVASLDKKIGLSEKLSA 160 (260)
T ss_pred CCcccccccccccCCCCc-cchhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhhhhhcCccccccc
Confidence 887664332211111111 2378889999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhcccccchHhHHHHHHHHHHhhhhhhhccccCceeecchhhhcchHHHHHHHHHhhhhhHHHHhhhhHH
Q 023572 161 GTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVAGAFNKVAQAAGEVGQKAKEKAGMAEE 240 (280)
Q Consensus 161 g~~~v~~k~k~vD~ky~vS~kt~sa~~aa~q~~~~a~sa~~~n~y~~~ga~wvs~a~~~~akaa~~~~~~~~~k~~~~~~ 240 (280)
|+++||+++|+||||||||+||++|+.+|||+++++|+|||+||||++||+||||||+||||||.|+|+||+|||+++|+
T Consensus 161 g~~~v~~~~k~vDeky~vs~kt~sa~~~~~~~~~~a~sai~~~~y~~~ga~w~~~a~~~~a~aa~~~~~~~~~~~~~~~~ 240 (260)
T PLN03120 161 GTAVVNEKVKEVDQKYQVSEKTKSALAAAEQKVSSAGSAIMKNRYVLTGASWVTGAFNKVAKAAEEVGQKTKEKVGAAEE 240 (260)
T ss_pred chHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHhhhhHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHhhhhcccccccccCCCCCC
Q 023572 241 EQKRKMVDDFAQVHLAESPKT 261 (280)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~ 261 (280)
++ +++++|+++|+++||++
T Consensus 241 ~~--~~~~~~~~~~~~~~~~~ 259 (260)
T PLN03120 241 EQ--QVVDAYANIHLSESPKA 259 (260)
T ss_pred hc--ccccccceeecCCCCCC
Confidence 87 89999999999999975
No 2
>PLN03121 nucleic acid binding protein; Provisional
Probab=100.00 E-value=6.3e-75 Score=527.29 Aligned_cols=226 Identities=43% Similarity=0.594 Sum_probs=208.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCCCCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQLP 82 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~~~~~ 82 (280)
|+||+|+||++.+||++|++||++||+|.+|+|+++++..++|||+|++++++++||+|||++|+|++|+|+++++|.+|
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~y~~~ 84 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQYEDE 84 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcccccC
Confidence 68999999999999999999999999999999999987789999999999999999999999999999999999999987
Q ss_pred CCccccccc--CC----------CCCCCcccccchHHHHHHHHhhcccccCHHHHHHHHhhhhccCcchHHHHHHhhhhh
Q 023572 83 PAASALHET--KN----------KTPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEKHQFTSTASAKVASFDK 150 (280)
Q Consensus 83 ~~~~~~~~~--~~----------~~~e~~~~a~~~a~~Iva~~LA~GyvL~d~ai~KA~~fDekhgvSs~~~a~v~~lD~ 150 (280)
+.....+.. ++ ..+.+. .++++||+||++||||||+||+||++|||+|||+||||++++++|.+||+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~a~~~aq~Vv~tmLAkGyvLgkda~~KAkafDE~h~lss~a~a~v~~~d~ 163 (243)
T PLN03121 85 FDFWNRPSWDTEDISTHNYETNQFASTPG-EAVTVAQEVVKTMLAKGYVLGKDALSKAKAFDESHQVSATAAAKVAELSK 163 (243)
T ss_pred cccccCccccccccccccccccccCCCch-hhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHhhhhhhhhhhh
Confidence 764222110 00 011222 37889999999999999999999999999999999999999999999999
Q ss_pred ccCccccccccchhhhhhhhhhcccccchHhHHHHHHHHHHhhhhhhhccccCceeecchhhhcchHHHHHHHHHhhhhh
Q 023572 151 KIGFSEKISVGTSVVSDRVREVDQKFQVSEKTKSAFVAAEQKVSSVGSAIMKNRYVFTGASWVAGAFNKVAQAAGEVGQK 230 (280)
Q Consensus 151 k~g~tek~~~g~~~v~~k~k~vD~ky~vS~kt~sa~~aa~q~~~~a~sa~~~n~y~~~ga~wvs~a~~~~akaa~~~~~~ 230 (280)
|+||||||++|+ +++|+|||||||||+|++|+.++||++++||+||||||||++||+||||||+||||||+|+|++
T Consensus 164 ~iglt~k~~~g~----~~vk~vDeky~vs~~tksA~~aa~~~~~~a~sai~~~~Y~~~Ga~w~sga~~~~akaa~~~g~~ 239 (243)
T PLN03121 164 RIGLTDKIFAGM----EAVRSVDEKYHVSEFTKSAATATGRTAAAAANAVVNSSYFSKGALWVSDALTRAAKAAADLGAH 239 (243)
T ss_pred hccchhhhhhhH----HHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhcchhhcchHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 023572 231 AKE 233 (280)
Q Consensus 231 ~~~ 233 (280)
+++
T Consensus 240 ~~~ 242 (243)
T PLN03121 240 GSN 242 (243)
T ss_pred ccC
Confidence 976
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.57 E-value=2.1e-14 Score=121.87 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=71.0
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 2 SIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 2 s~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
..++|||+||++.+||++|+++|+.||+|.+|+|+.+.. ..+||||+|+++++|+.|| .|||..|+|+.|.|..+.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 356899999999999999999999999999999998763 3689999999999999999 599999999999999875
Q ss_pred CC
Q 023572 78 DY 79 (280)
Q Consensus 78 ~~ 79 (280)
.-
T Consensus 113 ~~ 114 (144)
T PLN03134 113 DR 114 (144)
T ss_pred cC
Confidence 43
No 4
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=2e-14 Score=103.12 Aligned_cols=67 Identities=28% Similarity=0.445 Sum_probs=62.3
Q ss_pred EEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--CCCcEEEEEecChHHHHHHHh-hcCCeecCeeEE
Q 023572 6 VKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--EWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVS 72 (280)
Q Consensus 6 V~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~ 72 (280)
|||+|||+.+|+++|+++|+.||.|.++.+..+. ...++|||+|+++++++.|+. |||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999863 346899999999999999996 999999999985
No 5
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=4.1e-14 Score=119.45 Aligned_cols=81 Identities=30% Similarity=0.339 Sum_probs=73.5
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 1 MSIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 1 Ms~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
|+.+||||+|||..+||++|.++||.||+|..|-|--+.. +.+||||+|-..++|+.|| .+||+.|++++|.|...
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4568999999999999999999999999999999987763 3589999999999999999 59999999999999988
Q ss_pred CCCCC
Q 023572 77 PDYQL 81 (280)
Q Consensus 77 ~~~~~ 81 (280)
..+.+
T Consensus 114 ~GF~e 118 (153)
T KOG0121|consen 114 AGFVE 118 (153)
T ss_pred ccchh
Confidence 77654
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.48 E-value=1.9e-13 Score=127.33 Aligned_cols=76 Identities=20% Similarity=0.267 Sum_probs=69.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
+++|||+|||+.+++++|+++|+.||.|.+++|+.+. ..+|||||+|.+.++|..|+ .|||..|+||.|.|....+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 3579999999999999999999999999999999885 24689999999999999999 5999999999999997743
No 7
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.44 E-value=6.5e-13 Score=96.87 Aligned_cols=67 Identities=28% Similarity=0.431 Sum_probs=59.2
Q ss_pred EEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHHh-hcCCeecCeeEE
Q 023572 6 VKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVS 72 (280)
Q Consensus 6 V~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~ 72 (280)
|+|+|||+.+++++|++||+.||.|..|.+..++. .+++|||+|.++++|..|+. ++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999998753 36899999999999999995 666999999884
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.43 E-value=5.3e-13 Score=124.37 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=69.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
..+|||+|||+.+||++|++||+.||+|.+|+|+.+.. ..|||||+|.++++|..|| .|||..|.|+.|.|..+.
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36899999999999999999999999999999998852 3589999999999999999 599999999999998764
No 9
>smart00362 RRM_2 RNA recognition motif.
Probab=99.37 E-value=3.8e-12 Score=89.11 Aligned_cols=70 Identities=31% Similarity=0.458 Sum_probs=64.0
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC-CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEE
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN-EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSIS 74 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~-~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~ 74 (280)
+|+|+|||+.+++++|++||+.+|.|.++.+..+. ...++|||+|.+++++..|+ .|+|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999775 23589999999999999999 599999999999873
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.37 E-value=2e-12 Score=123.94 Aligned_cols=74 Identities=22% Similarity=0.294 Sum_probs=68.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
.++|||+|||+++||++|+++|+.||+|++|+|+.+.. ..+||||+|.++++|..|+ .|||..|.++.|+|..+
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 47899999999999999999999999999999998853 3589999999999999999 59999999999999865
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.33 E-value=5.4e-12 Score=122.12 Aligned_cols=75 Identities=29% Similarity=0.427 Sum_probs=69.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+++++|++||+.||+|.+|.|+.+.. ..++|||+|.+.++|..||.|||..|.|++|.|....
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecc
Confidence 47999999999999999999999999999999998752 4689999999999999999999999999999998653
No 12
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.29 E-value=2.9e-11 Score=85.07 Aligned_cols=70 Identities=30% Similarity=0.463 Sum_probs=64.7
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEE
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSIS 74 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~ 74 (280)
+|+|+|||+.+++++|+++|+.||.|..+.+..++. ..++|||+|.+++++..|+ .++|..+.|+.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 589999999999999999999999999999998763 3689999999999999999 599999999999986
No 13
>PLN03213 repressor of silencing 3; Provisional
Probab=99.28 E-value=1e-11 Score=123.15 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=69.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecCh--HHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDM--QGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~--~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
+.+|||+||++.+|+++|+..|+.||.|.+|+|+++.+ ++||||+|..+ .++..|+ .|||+.+.||.|+|..+..
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 46899999999999999999999999999999997766 89999999988 6899999 6999999999999998753
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.26 E-value=5.9e-11 Score=114.91 Aligned_cols=78 Identities=24% Similarity=0.446 Sum_probs=71.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~~ 79 (280)
++|||+||++.+|+++|+++|+.||.|.+|.|..+.. ..++|||+|.+++.|..|+ .|||..|.|+.|.|..+.+.
T Consensus 187 ~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 187 LKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 6899999999999999999999999999999998763 3589999999999999999 59999999999999998754
Q ss_pred CC
Q 023572 80 QL 81 (280)
Q Consensus 80 ~~ 81 (280)
..
T Consensus 267 ~~ 268 (457)
T TIGR01622 267 TY 268 (457)
T ss_pred Cc
Confidence 43
No 15
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=1.2e-11 Score=117.58 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=70.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC-CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN-EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~-~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
+.++|+|||+...|-||+..|..+|+|.+|+|+..+ |.+||+||||+++++++.|- .|+|+.+.||.|.|..+.-
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 679999999999999999999999999999999775 77899999999999999998 6999999999999987743
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.25 E-value=1.9e-11 Score=124.93 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=69.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~~ 79 (280)
++|||+||++.++|++|+++|+.||.|.+|+|..+. ...|||||+|++++++..|+ .|||..|+|+.|.|....+.
T Consensus 108 ~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~ 187 (612)
T TIGR01645 108 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 187 (612)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccc
Confidence 689999999999999999999999999999999875 24689999999999999999 59999999999999865443
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.25 E-value=2.3e-11 Score=121.51 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=67.4
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
+|||+||++++||++|++||+.||.|.+|+|+++.. ..|+|||+|.++++|..|+ .||+..|.|+.|+|...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 799999999999999999999999999999999863 3589999999999999999 69999999999999765
No 18
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.24 E-value=4.3e-11 Score=101.69 Aligned_cols=74 Identities=26% Similarity=0.406 Sum_probs=69.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
++|||+||++.+|+++|+++|+.||.|.+|.+..+. ...++|||+|.+++.+..|+ .|+|..|.|+.|.|....
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 799999999999999999999999999999999885 34699999999999999999 599999999999999864
No 19
>smart00360 RRM RNA recognition motif.
Probab=99.23 E-value=4.2e-11 Score=83.34 Aligned_cols=67 Identities=30% Similarity=0.463 Sum_probs=60.9
Q ss_pred EeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEE
Q 023572 8 VSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSIS 74 (280)
Q Consensus 8 V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~ 74 (280)
|+|||+.+++++|+++|+.||.|..+.+..+.. ..++|||+|.+++++..|+ .|+|..++|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999998742 3579999999999999999 699999999999873
No 20
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=2.3e-11 Score=107.18 Aligned_cols=74 Identities=30% Similarity=0.383 Sum_probs=68.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.+.|||+||++.+++.||...|+.+|.|.+|-|-.. +.+||||+|+++.+|+.|+ .|||..|.|..|.|+....
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn--PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN--PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec--CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 368999999999999999999999999999999874 5789999999999999999 6999999999999998753
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.22 E-value=4.5e-11 Score=114.72 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=67.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecC--eeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVD--LSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~g--r~I~V~~a 76 (280)
.++|||+||++.+||++|+++|+.||+|.+++|+.+.. ..++|||+|++.++|+.|+ .|||..|.+ ++|+|..+
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 35799999999999999999999999999999998752 3589999999999999999 599999977 68899877
Q ss_pred CC
Q 023572 77 PD 78 (280)
Q Consensus 77 ~~ 78 (280)
..
T Consensus 273 ~~ 274 (346)
T TIGR01659 273 EE 274 (346)
T ss_pred Cc
Confidence 54
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.21 E-value=4.9e-11 Score=121.87 Aligned_cols=74 Identities=14% Similarity=0.234 Sum_probs=69.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
++|||+||++.+++++|+++|+.||+|.+++|.++.. .+|||||+|++.+++..|+ .|||..|+|+.|+|..+.
T Consensus 205 ~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 205 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 5899999999999999999999999999999998852 4689999999999999999 699999999999999775
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.20 E-value=6.7e-11 Score=118.16 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=69.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
+.+|||+||++.+|+++|+++|+.||.|++|++..+. ..+++|||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus 285 ~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 285 GVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 4679999999999999999999999999999999885 24689999999999999999 599999999999998874
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.19 E-value=9.2e-11 Score=114.87 Aligned_cols=75 Identities=23% Similarity=0.280 Sum_probs=69.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--C-CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--E-WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~-~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+.||.|..+.|+.+. + ..|||||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 3689999999999999999999999999999999874 2 4689999999999999999 599999999999999874
No 25
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=6.6e-11 Score=105.59 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=72.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCCCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPDYQ 80 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~~~ 80 (280)
++|||+|||+.+.|.+|.++|..+|.|..|+|....+...||||+|+++.+|+.|+. -||-.++|..|.|+.+....
T Consensus 7 ~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr 84 (241)
T KOG0105|consen 7 RRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGR 84 (241)
T ss_pred ceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCC
Confidence 689999999999999999999999999999999887888999999999999999995 99999999999999886554
No 26
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.14 E-value=1.9e-10 Score=113.78 Aligned_cols=73 Identities=16% Similarity=0.253 Sum_probs=67.5
Q ss_pred cCeEEEeCCCC-CCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSL-GATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~-~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
+++|||+||++ .+|+++|+++|+.||.|.+|+++.+. .++|||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus 275 ~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~--~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 275 GSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK--KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 46899999998 69999999999999999999998863 589999999999999999 599999999999998764
No 27
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.14 E-value=1.4e-10 Score=113.50 Aligned_cols=76 Identities=17% Similarity=0.316 Sum_probs=66.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccC------------CceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCee
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFS------------GDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLS 70 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~c------------G~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~ 70 (280)
.|+|||+|||+.+|+++|++||+.| +.|.++.+..+ .+||||+|.++++|..||.|||..|.|+.
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~---kg~afVeF~~~e~A~~Al~l~g~~~~g~~ 251 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKE---KNFAFLEFRTVEEATFAMALDSIIYSNVF 251 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCC---CCEEEEEeCCHHHHhhhhcCCCeEeeCce
Confidence 4799999999999999999999864 45666666543 57999999999999999999999999999
Q ss_pred EEEEeCCCCCC
Q 023572 71 VSISLAPDYQL 81 (280)
Q Consensus 71 I~V~~a~~~~~ 81 (280)
|.|....+|.+
T Consensus 252 l~v~r~~~~~~ 262 (509)
T TIGR01642 252 LKIRRPHDYIP 262 (509)
T ss_pred eEecCccccCC
Confidence 99987777663
No 28
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.12 E-value=2e-10 Score=113.75 Aligned_cols=72 Identities=22% Similarity=0.219 Sum_probs=66.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh---hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL---LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl---LnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+||++|+++|+.||.|.+|.|+.+ .++|||+|+++++|..|+. +|+..|.|+.|.|..+.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~---k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG---KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC---CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 479999999999999999999999999999999865 4799999999999999994 68999999999998764
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.11 E-value=2.4e-10 Score=116.28 Aligned_cols=69 Identities=30% Similarity=0.374 Sum_probs=64.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccC--CceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFS--GDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~c--G~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
++|||+||++.+||++|+++|+.| |+|++|++++ +||||+|++.++|..|+. |||.+|+|+.|.|..+.
T Consensus 234 k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-----gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 234 KILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-----DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-----CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 689999999999999999999999 9999999874 499999999999999995 99999999999999774
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.07 E-value=3.5e-10 Score=115.15 Aligned_cols=74 Identities=23% Similarity=0.231 Sum_probs=66.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--CCCcEEEEEecChHHHHHHH-hhcCCeec-CeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--EWTQIAYVTFKDMQGAETAV-LLSGATIV-DLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~~~~~A~VtFed~~aA~tAL-lLnG~~L~-gr~I~V~~a 76 (280)
+++|||+|||++++|++|+++|+.||.|.+|+|+.|. ...+||||+|.++++|+.|| .|||..|. |+.|.|...
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4789999999999999999999999999999999884 24689999999999999999 69999995 777777654
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=5.9e-10 Score=104.01 Aligned_cols=72 Identities=28% Similarity=0.320 Sum_probs=66.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.+||||+||++-+||++||+.|+.+|.|..|++..+ .++|||.|++.++|..|+ .+||++|.|+.|+...-.
T Consensus 164 NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~---qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGK 236 (321)
T KOG0148|consen 164 NTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD---QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGK 236 (321)
T ss_pred CceEEeCCcCccccHHHHHHhcccCCcceEEEEecc---cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccc
Confidence 479999999999999999999999999999999987 479999999999999998 699999999999997654
No 32
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.01 E-value=1.4e-09 Score=76.91 Aligned_cols=54 Identities=20% Similarity=0.420 Sum_probs=48.8
Q ss_pred HHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEe
Q 023572 20 IKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISL 75 (280)
Q Consensus 20 LkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~ 75 (280)
|+++|+.||+|.+|.+.+.. .++|||+|.+.++|..|+ .|||..+.|++|.|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 68999999999999998764 589999999999999999 5999999999999975
No 33
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.00 E-value=4.4e-10 Score=101.65 Aligned_cols=74 Identities=23% Similarity=0.402 Sum_probs=69.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.++.|-||.+.||.++|+..|..||.|-+|.|..|. ...+||||-|.+..+|+.|| .|+|.+|+|+.|.|..+.
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 479999999999999999999999999999999986 35699999999999999999 699999999999999874
No 34
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=1.6e-09 Score=88.93 Aligned_cols=73 Identities=19% Similarity=0.320 Sum_probs=69.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
|-+||.|||.++|.+++.++|..+|.|.-|++-...+..|+|||.|++-.+|+.|+ +|+|..+.++.+.|-.+
T Consensus 19 riLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 19 RILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred eeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 56999999999999999999999999999999888888999999999999999999 79999999999999876
No 35
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=1e-09 Score=100.45 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=67.4
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
+|||+||+|.++.+.|+++|..+|+|.+..++.|+. .+|++||||.|.++|..|+.=-+-.|+||.-.+..+.
T Consensus 14 KifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 14 KIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 699999999999999999999999999999999972 4689999999999999999988999999998887663
No 36
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=2.2e-09 Score=101.17 Aligned_cols=75 Identities=16% Similarity=0.270 Sum_probs=69.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
+|+||+-|++.++|.+|+..|+.||+|+.|.|+.+. ...++|||+|+++.+...|. .-+|..|+|+.|.|.....
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERg 180 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERG 180 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccc
Confidence 699999999999999999999999999999999996 34689999999999999999 5999999999999976543
No 37
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=2.1e-10 Score=102.04 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=72.6
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCCCC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPDYQ 80 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~~~ 80 (280)
-|||+|||+..||.||--.||.||+|.+|.|++|.+ ..||||..|+|..+---|+ .|||..|.||.|+|.+..+|.
T Consensus 37 ~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Yk 116 (219)
T KOG0126|consen 37 YIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNYK 116 (219)
T ss_pred EEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccccc
Confidence 599999999999999999999999999999999973 3589999999999988888 699999999999999999997
Q ss_pred CC
Q 023572 81 LP 82 (280)
Q Consensus 81 ~~ 82 (280)
.|
T Consensus 117 ~p 118 (219)
T KOG0126|consen 117 KP 118 (219)
T ss_pred CC
Confidence 76
No 38
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=3.9e-09 Score=97.22 Aligned_cols=74 Identities=30% Similarity=0.389 Sum_probs=68.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.||.|+|||.+++|.+|+++|..+|.|.+|.|.++.. ..|||||+|++.+.|..|+ .|||.-.+.-.|+|+.+.
T Consensus 190 ~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 190 ATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4799999999999999999999999999999999974 3689999999999999999 599999999999998763
No 39
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.92 E-value=2.7e-09 Score=105.53 Aligned_cols=77 Identities=23% Similarity=0.325 Sum_probs=71.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~~ 79 (280)
++|||+||++.++|++|.++|+..|.|.+++++.|++ .+||+|++|.+++.+..|+ .|||.++.||.|+|..+.++
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7899999999999999999999999999999999873 3689999999999999999 59999999999999988765
Q ss_pred C
Q 023572 80 Q 80 (280)
Q Consensus 80 ~ 80 (280)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 40
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=2.2e-09 Score=91.81 Aligned_cols=74 Identities=26% Similarity=0.364 Sum_probs=68.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCC---CcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEW---TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~---~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
|.-|+|+||.+.+||++|++.|..||+|+.|.|..|..+ .++|.|+|+....|..|+ .|||+.|.|+.|.|..+
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 446999999999999999999999999999999887632 589999999999999999 69999999999999887
No 41
>smart00361 RRM_1 RNA recognition motif.
Probab=98.86 E-value=9.1e-09 Score=76.49 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=50.1
Q ss_pred HHHHHHHcc----cCCceeEEE-EeeCC-----CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEE
Q 023572 17 ERGIKEFFS----FSGDIEYVE-MKSDN-----EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSIS 74 (280)
Q Consensus 17 E~dLkeFFS----~cG~I~~I~-l~~d~-----~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~ 74 (280)
+++|+++|+ .+|.|.+|. +..+. ...+++||+|.++++|..|+ .|||..++|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 689999999 999999996 55443 24689999999999999999 599999999999873
No 42
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.2e-08 Score=98.97 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=67.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC-CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN-EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~-~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
+.|||.||++.++.++|.++|+.||+|.+|++..+. +..++ ||.|+++++|..|+ +|||..+.|..|.|-+...
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 348999999999999999999999999999999887 44567 99999999999999 7999999999999987643
No 43
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=8.8e-09 Score=103.42 Aligned_cols=78 Identities=21% Similarity=0.271 Sum_probs=72.7
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 1 MSIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 1 Ms~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
|+|.|+||++||++++.++|.+|||..|.|.++-++.+.+ .++|+||+|.=.+++..|+ +++++.++|+.|+|.++
T Consensus 3 ~~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 3 KSGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPA 82 (678)
T ss_pred CCCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccc
Confidence 6789999999999999999999999999999999998875 4689999999999999999 69999999999999987
Q ss_pred CC
Q 023572 77 PD 78 (280)
Q Consensus 77 ~~ 78 (280)
.-
T Consensus 83 ~~ 84 (678)
T KOG0127|consen 83 KK 84 (678)
T ss_pred cc
Confidence 53
No 44
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=1.1e-08 Score=100.65 Aligned_cols=69 Identities=28% Similarity=0.398 Sum_probs=65.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.-+||.||+.++||+.|++.|+.+|+|++|..++| +|||.|.+.+++-.|+ .+||.+|+|..|.|+.+.
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 45899999999999999999999999999999976 9999999999999999 599999999999999874
No 45
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.74 E-value=1.8e-08 Score=100.03 Aligned_cols=73 Identities=27% Similarity=0.347 Sum_probs=67.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC-CCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN-EWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~-~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
.-|.+.+|||+||++||++||+.|+ |+++.+.+.. .+++-|||+|+++++++.||.++-..+..|.|.|-.+.
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 4689999999999999999999997 8999999885 46799999999999999999999999999999998764
No 46
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.74 E-value=1.1e-08 Score=99.32 Aligned_cols=79 Identities=24% Similarity=0.368 Sum_probs=71.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC------CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE------WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~------~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
.-|.|.||+|++|.++++.+|.+.|+|..+.|+...+ ...+|||.|.|++.+..|.+|.++++.|+.|.|.|+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 4699999999999999999999999999999997532 3589999999999999999999999999999999987
Q ss_pred CCCCC
Q 023572 78 DYQLP 82 (280)
Q Consensus 78 ~~~~~ 82 (280)
+...|
T Consensus 88 ~~~~p 92 (479)
T KOG4676|consen 88 DEVIP 92 (479)
T ss_pred CCCCc
Confidence 76543
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=3e-08 Score=99.67 Aligned_cols=76 Identities=29% Similarity=0.400 Sum_probs=67.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhc------C-CeecCeeEE
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLS------G-ATIVDLSVS 72 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLn------G-~~L~gr~I~ 72 (280)
++||||.|||+++||++|.+.|+.||+|.++.|+.++. ..|+|||.|.++.++..+|..- | -.|+||.|.
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 58999999999999999999999999999999998873 3589999999999999999644 3 568999999
Q ss_pred EEeCCC
Q 023572 73 ISLAPD 78 (280)
Q Consensus 73 V~~a~~ 78 (280)
|+++-.
T Consensus 372 v~~Av~ 377 (678)
T KOG0127|consen 372 VTLAVT 377 (678)
T ss_pred eeeccc
Confidence 998743
No 48
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=1e-08 Score=99.21 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=70.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~~ 79 (280)
+.|||+.|++...|+.||.-|..||.|++|.|.-|+ ...+||||+|+=|+++.-||. |||..|+||.|+|-...++
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 489999999999999999999999999999998776 236899999999999999994 9999999999999877665
Q ss_pred C
Q 023572 80 Q 80 (280)
Q Consensus 80 ~ 80 (280)
.
T Consensus 194 p 194 (544)
T KOG0124|consen 194 P 194 (544)
T ss_pred c
Confidence 3
No 49
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.72 E-value=2.9e-08 Score=97.82 Aligned_cols=75 Identities=23% Similarity=0.327 Sum_probs=68.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHcc-cCCceeEEEEeeCC-C-CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFS-FSGDIEYVEMKSDN-E-WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS-~cG~I~~I~l~~d~-~-~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
|.||++|||+++.+.+|+++|. ..|+|++|+|..|. + .+++|.|+|++++.+++|+ .||-.++.||+|.|...++
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 6799999999999999999996 68999999999886 3 4689999999999999999 5999999999999987765
No 50
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.70 E-value=2e-08 Score=89.26 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=69.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
..||||+||++.+|++.|.|+|-.||.|.+|.+.++.- ..||||++|.+++.++=|+ .||.-.|-|++|+|..+.
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46999999999999999999999999999999999862 4689999999999999999 699999999999999886
No 51
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.5e-08 Score=92.64 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=70.5
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 1 MSIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 1 Ms~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
|..||+||++|...+||.-|..-|=.+|.|.+|.++.|-+ .++|+||+|+..++|..|+ .||+.+|-||.|+|..+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3458999999999999999999999999999999998753 4689999999999999999 69999999999999876
Q ss_pred C
Q 023572 77 P 77 (280)
Q Consensus 77 ~ 77 (280)
.
T Consensus 88 k 88 (298)
T KOG0111|consen 88 K 88 (298)
T ss_pred C
Confidence 4
No 52
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=5.1e-08 Score=96.05 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=67.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCee-cCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATI-VDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L-~gr~I~V~~a 76 (280)
|+-|||+.||-++.|++|.-||...|+|-.++|+.|+ ..+++|||+|.+.+.|..|+ +||+.+| -|+.|.|+..
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 5789999999999999999999999999999999985 35799999999999999999 7999999 4778887755
No 53
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.64 E-value=4.3e-08 Score=89.77 Aligned_cols=76 Identities=28% Similarity=0.309 Sum_probs=70.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~ 78 (280)
.+.|+|+|+.+.+|.+++...|+-||.|..|+|..+.. ..+||||+|.+...+..||.|||..|.|+.|.|++...
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeeee
Confidence 46899999999999999999999999999999998862 36899999999999999999999999999999997753
No 54
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=2.4e-07 Score=86.66 Aligned_cols=75 Identities=23% Similarity=0.252 Sum_probs=69.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
+..|||=||+|++.|.-|.++|+.+|.|..|++++|.. ..+|+||++.+.+.|..|+. |||..|++|.|.|....
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 57899999999999999999999999999999999963 46899999999999999984 99999999999998654
No 55
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.48 E-value=2.3e-07 Score=91.64 Aligned_cols=71 Identities=17% Similarity=0.293 Sum_probs=63.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEe
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISL 75 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~ 75 (280)
.++|+|.|||.++|++-|++-|..||.|.+.+|...... ...|.|.+++.|+.|+ +|||..|+||.|.|+.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gks--kGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKS--KGVVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCc--cceEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 368999999999999999999999999999999544322 3399999999999999 7999999999999974
No 56
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.46 E-value=3.9e-07 Score=87.54 Aligned_cols=72 Identities=24% Similarity=0.351 Sum_probs=65.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH--hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV--LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL--lLnG~~L~gr~I~V~~a~ 77 (280)
..|+||+||-+.++|.+|+++|-.||+|.+|.+... .+.|||+|....+|+.|. .+|...|+|+.|+|....
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 468999999999999999999999999999999876 459999999999999998 599999999999999543
No 57
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.45 E-value=2.6e-07 Score=87.30 Aligned_cols=122 Identities=18% Similarity=0.222 Sum_probs=87.2
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCCCCCC-
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPDYQLP- 82 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~~~~~- 82 (280)
.+||+|||..+++.+|+.+|..+|+|..++|+.+ ++||..++..+++.|+. |+|-+|+|..|.|+.+.+-..+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~s 78 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKAS 78 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc-----cceEEeecccccHHHHhhcccceecceEEEEEeccccCCCc
Confidence 7899999999999999999999999999999965 99999999999999996 9999999999999988764222
Q ss_pred CCcccccc------cCC--CCCCCcccccchHHHHHHHHhhcccccCHHHHHHHHhhhhc
Q 023572 83 PAASALHE------TKN--KTPNGAESALRKAEDVVSSMLAKGFILGKDAVFKAKTFDEK 134 (280)
Q Consensus 83 ~~~~~~~~------~~~--~~~e~~~~a~~~a~~Iva~~LA~GyvL~d~ai~KA~~fDek 134 (280)
...+..+- .|- +-++-+|. +-.+||..|-==-|.+-.|+.++-+.||..
T Consensus 79 tkl~vgNis~tctn~ElRa~fe~ygpv---iecdivkdy~fvh~d~~eda~~air~l~~~ 135 (346)
T KOG0109|consen 79 TKLHVGNISPTCTNQELRAKFEKYGPV---IECDIVKDYAFVHFDRAEDAVEAIRGLDNT 135 (346)
T ss_pred cccccCCCCccccCHHHhhhhcccCCc---eeeeeecceeEEEEeeccchHHHHhccccc
Confidence 11111111 010 01112221 113666554433444667777777777654
No 58
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.7e-07 Score=89.23 Aligned_cols=74 Identities=20% Similarity=0.301 Sum_probs=68.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.-+||.-|.|-+|.++|.-+||.+|+|.+++++++.. .-++|||+|++.++.+.|. .|++..|+++.|.|...+
T Consensus 240 NVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 240 NVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred ceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 4689999999999999999999999999999999963 3589999999999999998 799999999999997543
No 59
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=5.1e-07 Score=87.74 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=64.9
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
++||+ +++||..|.++|+..|++.+|+++++-..-++|||.|.++.+|+.|| .||...|.|++|+|-+..
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ 73 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc
Confidence 68899 99999999999999999999999999843489999999999999999 699999999999997663
No 60
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.43 E-value=6.9e-07 Score=83.63 Aligned_cols=73 Identities=21% Similarity=0.356 Sum_probs=67.5
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--C-CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--E-WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~-~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.+.|-=||...|+++||.+|+..|+|++++|++|+ + .-+++||.|-++++|+.|+ .|||-.|-.+.|+|+.+.
T Consensus 43 NLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 43 NLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred eeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 47888899999999999999999999999999997 3 3489999999999999999 699999999999999774
No 61
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.40 E-value=4e-07 Score=91.41 Aligned_cols=78 Identities=22% Similarity=0.343 Sum_probs=70.4
Q ss_pred EEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--C-CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCCCCC
Q 023572 6 VKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--E-WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPDYQL 81 (280)
Q Consensus 6 V~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~-~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~~~~ 81 (280)
+||+||.++.+|++|+..|..+|+|+.|.+..|. + .++|+||+|.+.+.+..|+ .|||-+|-|+.|+|....+...
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 8999999999999999999999999999999985 3 4689999999999999998 5999999999999988765544
Q ss_pred CC
Q 023572 82 PP 83 (280)
Q Consensus 82 ~~ 83 (280)
.+
T Consensus 361 ~~ 362 (549)
T KOG0147|consen 361 TK 362 (549)
T ss_pred cc
Confidence 43
No 62
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.37 E-value=7.2e-07 Score=88.11 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=66.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--C-CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--E-WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~-~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
+.+|||.|||+++++.+|+++|+.+|.|+...|.... + ..+|+||+|++..++..|++-+=-.|+++.+.|+...
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 3569999999999999999999999999999987643 2 2399999999999999999999889999999998764
No 63
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=1.1e-06 Score=90.50 Aligned_cols=72 Identities=18% Similarity=0.373 Sum_probs=66.7
Q ss_pred EEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCC------CcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 6 VKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEW------TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 6 V~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~------~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
+||+|+++.+|.++|...|+..|.|.++.|...+.+ .||+||+|.+++.|..|+ .|+|+.|+|+.|.|..+.
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 899999999999999999999999999999866532 499999999999999999 599999999999999886
No 64
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.31 E-value=6.1e-07 Score=88.35 Aligned_cols=75 Identities=25% Similarity=0.315 Sum_probs=65.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHH-hhcCCe-ecC--eeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAV-LLSGAT-IVD--LSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tAL-lLnG~~-L~g--r~I~V~~a 76 (280)
.+.+||+-|+..+||.+|++.|+.||.|++|.|.+++. .+|+|||+|...+-|..|+ .|||+. +.| .+|.|..+
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 46789999999999999999999999999999999873 4799999999999999999 599964 554 47888766
Q ss_pred C
Q 023572 77 P 77 (280)
Q Consensus 77 ~ 77 (280)
.
T Consensus 204 D 204 (510)
T KOG0144|consen 204 D 204 (510)
T ss_pred c
Confidence 4
No 65
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=1.2e-06 Score=82.19 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=67.3
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
-|+|+.|++.++-++||+-|..+|+|.+.++++|.. ..+++||.|-+.+.|+.|+ .|||.=|++|.|+-..+.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 389999999999999999999999999999999963 4689999999999999999 699999999999987653
No 66
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.30 E-value=5.9e-07 Score=85.67 Aligned_cols=77 Identities=19% Similarity=0.249 Sum_probs=70.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~~ 79 (280)
.++++|++|+|.++++.|+++|+.+|+|..+.+.++. ..++|.||+|.+++.+..+|...-..|+|+.|.+..+-..
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r 85 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSR 85 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCc
Confidence 4689999999999999999999999999999999986 3468999999999999999999999999999999887543
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.29 E-value=1.5e-06 Score=90.41 Aligned_cols=74 Identities=23% Similarity=0.329 Sum_probs=68.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~~ 79 (280)
.||++|++|+.+++|.||.+.|..||+|.+|.|+.. .++|||++...++|+.|| .|++..+.++.|+|..+-+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~---R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP---RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC---CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 489999999999999999999999999999999854 689999999999999999 69999999999999987554
No 68
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.25 E-value=2.3e-06 Score=82.30 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=65.9
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeE--------EEEeeCC-C-CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEE
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEY--------VEMKSDN-E-WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSI 73 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~--------I~l~~d~-~-~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V 73 (280)
.|||+|||+++|-+++.++|+.||-|.+ |+|.++. | -.|-|.+.|-..+++.-|+ +||+..|.|+.|+|
T Consensus 136 ~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rV 215 (382)
T KOG1548|consen 136 SVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRV 215 (382)
T ss_pred eEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEE
Confidence 5999999999999999999999998854 7888776 3 3589999999999999999 79999999999999
Q ss_pred EeCC
Q 023572 74 SLAP 77 (280)
Q Consensus 74 ~~a~ 77 (280)
..+.
T Consensus 216 erAk 219 (382)
T KOG1548|consen 216 ERAK 219 (382)
T ss_pred ehhh
Confidence 9874
No 69
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.25 E-value=1.3e-06 Score=83.30 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=69.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
+.|+|++||+.++|++++++|..+|.|..+.++.|.. ..+|+||+|.++++++.++...-++|.|+.+.|..+.
T Consensus 98 kkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 98 KKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred eEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeecc
Confidence 4799999999999999999999999999999998874 4689999999999999999999999999999999874
No 70
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.23 E-value=1.1e-06 Score=82.99 Aligned_cols=70 Identities=20% Similarity=0.314 Sum_probs=65.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.+++|+||++.++.++||+.|..+|.+..++|+.+ ++||.|+-.+++..|+ .|||+++.|+.++|.....
T Consensus 79 tkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-----y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 79 TKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-----YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred cccccCCCCccccCHHHhhhhcccCCceeeeeecc-----eeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 46999999999999999999999999999999865 9999999999999999 5999999999999986644
No 71
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.19 E-value=3.4e-06 Score=76.90 Aligned_cols=73 Identities=23% Similarity=0.309 Sum_probs=68.6
Q ss_pred eEEEeCCCCCCCHHHHHH----HcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 5 TVKVSNVSLGATERGIKE----FFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLke----FFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
|+||.||...+..++|+. +||.+|+|.+|....-..-+|-|||.|.+.+++..|+ .|+|-.+-|.+++|..+.
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 999999999999999998 9999999999999877767899999999999999999 599999999999998764
No 72
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.17 E-value=3.4e-06 Score=85.68 Aligned_cols=77 Identities=17% Similarity=0.182 Sum_probs=71.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
+|.++|++|+..+.-.+|+.+||.||+|.-.+++... +..+|+|||+.....|..++ .|+-++|.|+-|.|+.+.+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 6889999999999999999999999999999998764 56799999999999999999 6999999999999998865
Q ss_pred C
Q 023572 79 Y 79 (280)
Q Consensus 79 ~ 79 (280)
-
T Consensus 485 E 485 (940)
T KOG4661|consen 485 E 485 (940)
T ss_pred C
Confidence 3
No 73
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.16 E-value=7.1e-06 Score=79.89 Aligned_cols=73 Identities=14% Similarity=0.242 Sum_probs=67.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
..|||..+.|+.+|+||+..|.-||+|.+|.|.+++ +.+||+||+|.+.++-..|+ -||=-.|+|+.|+|-.+
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 479999999999999999999999999999999886 34689999999999999999 59999999999999776
No 74
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.13 E-value=2.3e-06 Score=77.89 Aligned_cols=68 Identities=28% Similarity=0.438 Sum_probs=63.2
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.|||++|++.+.+.+|.+||..+|.|.++.|. .+|+||+|+++.+|..|+ -|||.+|.|-.+.|+.+.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 79999999999999999999999999999996 578999999999999999 599999999997777665
No 75
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.11 E-value=9.8e-07 Score=80.77 Aligned_cols=74 Identities=24% Similarity=0.299 Sum_probs=68.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC-CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN-EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~-~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
||++|.|+...++|+-|.|+|-..|.|..|.|..+. +..+||||.|+++-++.-|+ ||||-.|-+++|.|++-.
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 899999999999999999999999999999998775 34579999999999999999 899999999999998653
No 76
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.10 E-value=8.4e-06 Score=75.46 Aligned_cols=74 Identities=27% Similarity=0.394 Sum_probs=67.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.+|+|+||++.++++||+++|..+|.++.+-+..+. ...++|-|+|...++|..|+ .+||..|+|+++.+....
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 469999999999999999999999999999998876 34699999999999999999 599999999999987654
No 77
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.07 E-value=4.2e-06 Score=74.69 Aligned_cols=74 Identities=15% Similarity=0.271 Sum_probs=63.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeE-EEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEY-VEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~-I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
+..++|+||.+.+.|..|.+.||++|.|.+ =++.+++ ...+++||.|.+.++...|+ .+||..+..++|+|+.+
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 346899999999999999999999998765 2455554 23579999999999999999 69999999999999876
No 78
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.06 E-value=7.7e-06 Score=80.77 Aligned_cols=73 Identities=19% Similarity=0.359 Sum_probs=63.1
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH--hhcCCeecCe--eEEEEeCC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV--LLSGATIVDL--SVSISLAP 77 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL--lLnG~~L~gr--~I~V~~a~ 77 (280)
.+||+-||..++|.|||++|..+|.|..|.|++|+ ...++|||+|...+++..|+ +-|-.+|-|. +|.|.++.
T Consensus 36 KlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad 115 (510)
T KOG0144|consen 36 KLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYAD 115 (510)
T ss_pred hheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccc
Confidence 58999999999999999999999999999999997 24689999999999999998 4566777665 57776663
No 79
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.05 E-value=1.5e-06 Score=87.31 Aligned_cols=74 Identities=31% Similarity=0.468 Sum_probs=68.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a 76 (280)
.|||++--|+-.+++.+|.+||+-.|+|.+|+++.|.. ..+.|||+|.|.+++..|+.|+|+-+.|.+|.|.+.
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEeccc
Confidence 46888888999999999999999999999999999873 368999999999999999999999999999999765
No 80
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=4.1e-06 Score=84.40 Aligned_cols=70 Identities=23% Similarity=0.330 Sum_probs=64.4
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEE
Q 023572 1 MSIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVS 72 (280)
Q Consensus 1 Ms~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~ 72 (280)
|..+++.|.||+..+++++|++.|+-+|+|..|+..+. ..+..||+|-|-..|++|| .||+..|.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~--~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN--KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc--cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 56789999999999999999999999999999777654 4589999999999999999 6999999999998
No 81
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.97 E-value=1.7e-05 Score=64.36 Aligned_cols=54 Identities=30% Similarity=0.421 Sum_probs=36.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV 59 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL 59 (280)
|.-|++.|++..++.++|++.|+.+|.|.+|++.+. ...|||.|.++++|..|+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~ 54 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKAL 54 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHH
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHHH
Confidence 457999999999999999999999999999999864 359999999999999998
No 82
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.78 E-value=2.1e-05 Score=81.21 Aligned_cols=75 Identities=19% Similarity=0.332 Sum_probs=67.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
..|.|.|||+.++-++|+++|+.+|.|.+|+|+...+ .+|||||+|-.++.+..|+ .|.++-|-||.|.++.+.+
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 4799999999999999999999999999999987632 3689999999999999999 6889999999999988753
No 83
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.77 E-value=5.2e-05 Score=54.46 Aligned_cols=52 Identities=27% Similarity=0.349 Sum_probs=43.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV 59 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL 59 (280)
+.|-|++.++...+. |..+|..||+|.++.+. ......||.|.++.+++.||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 579999999887755 55588889999999986 23569999999999999986
No 84
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.75 E-value=5.5e-05 Score=71.32 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=56.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHH-hhcCCe
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAV-LLSGAT 65 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tAL-lLnG~~ 65 (280)
.|.+||+-|...-+|+|++.+|+.+|.|+.+.+.+..+ .+|+|||.|.+.-++..|+ .|+|..
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSq 84 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQ 84 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccc
Confidence 47899999999999999999999999999999998763 4689999999999999999 488753
No 85
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.74 E-value=7.6e-05 Score=67.65 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=63.0
Q ss_pred eEEEeCCCCCCCHHHHHHHcccC-CceeEEEEeeCC--C-CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFS-GDIEYVEMKSDN--E-WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~c-G~I~~I~l~~d~--~-~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
-++|..|+..+-|.+|..||..+ |.+..+++.++. | ..+||||+|++++-|+-|- .||+..|.++-|.+..-
T Consensus 51 ~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 51 VVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred ceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 37899999999999999998755 899999997775 3 4689999999999999987 69999999999888754
No 86
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.69 E-value=0.00017 Score=66.63 Aligned_cols=76 Identities=25% Similarity=0.277 Sum_probs=61.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--C--CCcEEEEEecChHHHHHHH-hhcCCeec---CeeEEEE
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--E--WTQIAYVTFKDMQGAETAV-LLSGATIV---DLSVSIS 74 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~--~~~~A~VtFed~~aA~tAL-lLnG~~L~---gr~I~V~ 74 (280)
.||+||++||.++-.++|..+|..|=--+...|...+ + .+.+||++|.+.+.|..|+ .|||..++ ++.|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 4899999999999999999999877434444443332 2 2479999999999999999 69999997 6788888
Q ss_pred eCCC
Q 023572 75 LAPD 78 (280)
Q Consensus 75 ~a~~ 78 (280)
.+..
T Consensus 114 lAKS 117 (284)
T KOG1457|consen 114 LAKS 117 (284)
T ss_pred ehhc
Confidence 7753
No 87
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.61 E-value=0.00029 Score=57.14 Aligned_cols=73 Identities=14% Similarity=0.051 Sum_probs=52.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEE-EeeC---------CCCCcEEEEEecChHHHHHHHhhcCCeecCeeEE
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVE-MKSD---------NEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVS 72 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~-l~~d---------~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~ 72 (280)
.+.|.|-+.|+. .-..|.+.|+.||+|.+.. +.++ ......-.|+|+++.+|..||..||..|.|.-+.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 467999999998 5677888999999997775 1111 1235699999999999999999999999998665
Q ss_pred -EEeC
Q 023572 73 -ISLA 76 (280)
Q Consensus 73 -V~~a 76 (280)
|.++
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 4443
No 88
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.59 E-value=0.00029 Score=56.11 Aligned_cols=67 Identities=24% Similarity=0.318 Sum_probs=47.6
Q ss_pred CeEEEeCCCCCCCHHHHH----HHcccCC-ceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIK----EFFSFSG-DIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLk----eFFS~cG-~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
..++|.|||.......|+ .++..|| +|.+|. .+.|+|.|.+++.|..|+ .|+|..+-|+.|.|...+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 468999999999887765 6777997 776662 479999999999999999 599999999999999774
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.58 E-value=0.00013 Score=72.92 Aligned_cols=73 Identities=22% Similarity=0.234 Sum_probs=60.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeE-EEEeeCC--CCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEY-VEMKSDN--EWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 76 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~-I~l~~d~--~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a 76 (280)
-.|.+.+||+.||++||.+||+-.=-+.. |.|+.+. ..++-|||.|++++.++.||..+-..|+-|.|.|-.+
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 36899999999999999999997643333 4455443 3468999999999999999999999999999999754
No 90
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.57 E-value=8.5e-05 Score=70.09 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=69.0
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 2 SIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 2 s~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
.|+.+|+-.||-...+.+|...|-.+|.|.+.++.-|+ ..++|+||.|.++.++.+|+ .|||-.|+=+.|+|...
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 47899999999999999999999999999999999886 34689999999999999999 59999999999999765
No 91
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.55 E-value=5e-05 Score=69.26 Aligned_cols=68 Identities=25% Similarity=0.438 Sum_probs=62.1
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEE
Q 023572 1 MSIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSI 73 (280)
Q Consensus 1 Ms~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V 73 (280)
|+.+.+.|.|++..+.+.+|.++|+++|.+....+ ..++++|.|+.++++..|+ .|+|..|.|+.|++
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh-----hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 56678999999999999999999999999966665 2569999999999999999 79999999999999
No 92
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.54 E-value=6e-05 Score=72.79 Aligned_cols=75 Identities=24% Similarity=0.328 Sum_probs=65.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeE--------EEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeE
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEY--------VEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSV 71 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~--------I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I 71 (280)
-||||-+|+.++++++|-+||..||.|.. |.|..+.+ ..+-|.|+|+|+.++..|+ .++++.+.++.|
T Consensus 67 ~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~i 146 (351)
T KOG1995|consen 67 ETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTI 146 (351)
T ss_pred ccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCc
Confidence 48999999999999999999999999864 44555542 3689999999999999999 599999999999
Q ss_pred EEEeCCC
Q 023572 72 SISLAPD 78 (280)
Q Consensus 72 ~V~~a~~ 78 (280)
+|..+.-
T Consensus 147 kvs~a~~ 153 (351)
T KOG1995|consen 147 KVSLAER 153 (351)
T ss_pred hhhhhhh
Confidence 9987754
No 93
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.11 E-value=0.00029 Score=66.48 Aligned_cols=74 Identities=24% Similarity=0.308 Sum_probs=64.0
Q ss_pred CeEE-EeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 4 KTVK-VSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~-V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
.+++ |+|++..+++++|+++|.+||.|..+++..+.. ..+++||.|........++..+...+.++++.+....
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 3566 999999999999999999999999999998763 3589999999998888888667888899999887653
No 94
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.06 E-value=0.00053 Score=63.40 Aligned_cols=62 Identities=19% Similarity=0.364 Sum_probs=51.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCee
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATI 66 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L 66 (280)
.|+||.||.+++||++|+.+|+.|---..++|... +..++||++|++-+-+..|+ .|.|-.|
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 47999999999999999999997754556666433 45789999999999999998 6888766
No 95
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.92 E-value=0.0004 Score=64.91 Aligned_cols=66 Identities=21% Similarity=0.253 Sum_probs=57.1
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCC---------------CcEEEEEecChHHHHH-HHhhcCCeecC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEW---------------TQIAYVTFKDMQGAET-AVLLSGATIVD 68 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~---------------~~~A~VtFed~~aA~t-ALlLnG~~L~g 68 (280)
-||++||||......||++|+.+|.|-+|-|.+++.. ..-+.|+|.+-..|+. |.+|||..|+|
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Igg 155 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGG 155 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 5999999999999999999999999999999876421 1367899999988877 55899999999
Q ss_pred ee
Q 023572 69 LS 70 (280)
Q Consensus 69 r~ 70 (280)
+.
T Consensus 156 kk 157 (278)
T KOG3152|consen 156 KK 157 (278)
T ss_pred CC
Confidence 86
No 96
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.88 E-value=0.0038 Score=53.99 Aligned_cols=68 Identities=29% Similarity=0.348 Sum_probs=53.2
Q ss_pred CeEEEeCCCC------CCCH---HHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEE
Q 023572 4 KTVKVSNVSL------GATE---RGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSIS 74 (280)
Q Consensus 4 rTV~V~NIs~------~tTE---~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~ 74 (280)
-||.|.=.++ ...+ .+|.+.|+.||++.-|++..+ .-.|+|.+-++|-+||-|+|.+++|+.|+|.
T Consensus 28 aTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-----~mwVTF~dg~sALaals~dg~~v~g~~l~i~ 102 (146)
T PF08952_consen 28 ATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-----TMWVTFRDGQSALAALSLDGIQVNGRTLKIR 102 (146)
T ss_dssp -EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-----CEEEEESSCHHHHHHHHGCCSEETTEEEEEE
T ss_pred ceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-----eEEEEECccHHHHHHHccCCcEECCEEEEEE
Confidence 3677776662 2222 267788999999999988754 6899999999999999999999999999999
Q ss_pred eC
Q 023572 75 LA 76 (280)
Q Consensus 75 ~a 76 (280)
..
T Consensus 103 LK 104 (146)
T PF08952_consen 103 LK 104 (146)
T ss_dssp E-
T ss_pred eC
Confidence 76
No 97
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.85 E-value=0.0029 Score=66.11 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=63.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC------CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN------EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~------~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
..+||+||+|.++|+.|..-|..||.|-+|++.--. ...-++||-|-+..+++.|+ .|+|..+-+..+++-..
T Consensus 175 TNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 175 TNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred cceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 469999999999999999999999999999997332 12469999999999999999 69999998888887644
No 98
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.85 E-value=0.0045 Score=61.36 Aligned_cols=72 Identities=22% Similarity=0.319 Sum_probs=64.7
Q ss_pred CeEEEeCCCC-CCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSL-GATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~-~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
..+-|+|+.. .+|++-|..+|+-||+|.+|+|...++ --|.|.+.|..-|.-|+ .|+|..|-|+.|+|+...
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk--d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK--DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC--cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 4678888876 689999999999999999999998753 57999999999999999 699999999999998764
No 99
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.84 E-value=0.00086 Score=66.50 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=56.2
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC-----C-----------CCcEEEEEecChHHHHHHHhhcCC
Q 023572 1 MSIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN-----E-----------WTQIAYVTFKDMQGAETAVLLSGA 64 (280)
Q Consensus 1 Ms~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~-----~-----------~~~~A~VtFed~~aA~tALlLnG~ 64 (280)
|-+|||.|.|||.+-.-+.|.++|+.||.|+.|+|+.-+ . ..-+|+|+|+.-++|..|..|++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 567999999999999999999999999999999998651 1 123899999999999999976654
Q ss_pred eec
Q 023572 65 TIV 67 (280)
Q Consensus 65 ~L~ 67 (280)
.=+
T Consensus 309 e~~ 311 (484)
T KOG1855|consen 309 EQN 311 (484)
T ss_pred hhh
Confidence 433
No 100
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.79 E-value=0.0036 Score=65.41 Aligned_cols=70 Identities=23% Similarity=0.298 Sum_probs=60.8
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCce-eEEEEeeCC--CCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEE
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDI-EYVEMKSDN--EWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSIS 74 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I-~~I~l~~d~--~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~ 74 (280)
-|.|.|++.+++-+||-+||+.|-.+ .+|.+.+.+ ..++-|.|-|++++.|..|.. |++..|..|.|.+.
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 68899999999999999999998754 566666554 247999999999999999985 99999999999875
No 101
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.65 E-value=0.015 Score=46.90 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=54.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHcc--cCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeec
Q 023572 4 KTVKVSNVSLGATERGIKEFFS--FSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIV 67 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS--~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~ 67 (280)
.||-+.|||...|.++|.+.+. +.|+..-+-|+-|.. ..|+|||.|.+++.+..-. .++|....
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 4899999999999999998885 458888888887753 3699999999999998876 69988775
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.60 E-value=0.0043 Score=60.38 Aligned_cols=71 Identities=15% Similarity=0.301 Sum_probs=58.4
Q ss_pred eEEEeCCCCCCCHHHH------HHHcccCCceeEEEEeeCC---C-CCcEE--EEEecChHHHHHHH-hhcCCeecCeeE
Q 023572 5 TVKVSNVSLGATERGI------KEFFSFSGDIEYVEMKSDN---E-WTQIA--YVTFKDMQGAETAV-LLSGATIVDLSV 71 (280)
Q Consensus 5 TV~V~NIs~~tTE~dL------keFFS~cG~I~~I~l~~d~---~-~~~~A--~VtFed~~aA~tAL-lLnG~~L~gr~I 71 (280)
-|||-+|+|.+-.+++ .+||..||+|..|-+-+.. + ..+-+ ||+|...++|.+++ ..+|..++||.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 3899999998877772 4999999999999887543 1 12323 99999999999999 699999999999
Q ss_pred EEEe
Q 023572 72 SISL 75 (280)
Q Consensus 72 ~V~~ 75 (280)
+-+.
T Consensus 196 katY 199 (480)
T COG5175 196 KATY 199 (480)
T ss_pred eeec
Confidence 9863
No 103
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.20 E-value=0.0044 Score=62.80 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=67.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
..++|+||+...++.+++|.-.-+|.+...+++.+.. .++|||-+|.++.-...|+ .|||..++|..|.|..+
T Consensus 290 ~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 290 NKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred chhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 5699999999999999999999999999999998863 4689999999999999999 59999999999999876
No 104
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.64 E-value=0.044 Score=50.39 Aligned_cols=71 Identities=18% Similarity=0.277 Sum_probs=60.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeec-CeeEEEEeC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIV-DLSVSISLA 76 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~-gr~I~V~~a 76 (280)
.+.++.|||..++.+.+..+|..|.--+.|+++.. .++.|||+|.+...+..|. .|.|..|- ...+.|+.+
T Consensus 147 ~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~--~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 147 NILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP--RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred eEEEEecCCcchhHHHHHHHHhhCcccceeEeccC--CCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 57899999999999999999998877789998864 4679999999999888888 59988887 777777654
No 105
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.63 E-value=0.014 Score=57.66 Aligned_cols=70 Identities=23% Similarity=0.212 Sum_probs=58.2
Q ss_pred eEEEeCCCCCCCHHHHHHHcc-cC---CceeEEEEeeCC--CCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEE
Q 023572 5 TVKVSNVSLGATERGIKEFFS-FS---GDIEYVEMKSDN--EWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSIS 74 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS-~c---G~I~~I~l~~d~--~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~ 74 (280)
-|...+||+++|+.||.+||. .| |..+.|-++... ...|-|||.|..++.+..||..+-..|+-|.|.+-
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 367789999999999999996 23 355677776553 34799999999999999999999999999988774
No 106
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.59 E-value=0.07 Score=52.08 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=61.6
Q ss_pred cCeEEEeCCCC----CCC-------HHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCee
Q 023572 3 IKTVKVSNVSL----GAT-------ERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLS 70 (280)
Q Consensus 3 ~rTV~V~NIs~----~tT-------E~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~ 70 (280)
.+||.+.||=. ..+ .++|++=-+.||.|.+|.+... .+.|.+.|.|.+++.|..++ +|+|.-++||.
T Consensus 265 ~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~-hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRq 343 (382)
T KOG1548|consen 265 DRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR-HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQ 343 (382)
T ss_pred CcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc-CCCceeEEEeCChHHHHHHHHHhcCeeecceE
Confidence 47899999844 344 4455566889999999988743 34689999999999999999 79999999999
Q ss_pred EEEEeCCC
Q 023572 71 VSISLAPD 78 (280)
Q Consensus 71 I~V~~a~~ 78 (280)
|+-..+.+
T Consensus 344 l~A~i~DG 351 (382)
T KOG1548|consen 344 LTASIWDG 351 (382)
T ss_pred EEEEEeCC
Confidence 99988854
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.59 E-value=0.033 Score=56.50 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=45.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC------CCc---EEEEEecChHHHHHHH
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE------WTQ---IAYVTFKDMQGAETAV 59 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~------~~~---~A~VtFed~~aA~tAL 59 (280)
.+.|||++||+.++|+.|..+|..||. ..|+.....+ ..+ ++|..|+++.++..-|
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs-~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll 323 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGS-VKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLL 323 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccc-eEeecCCCccccccCCCCCcccEEEEEecchHHHHHHH
Confidence 368999999999999999999999998 4677663221 134 9999999999887643
No 108
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.38 E-value=0.018 Score=57.00 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=61.1
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCC-ceeE--EEEeeCC--CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSG-DIEY--VEMKSDN--EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG-~I~~--I~l~~d~--~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.|...+||+.++.+||-+||..+- .|.. |.|+-+. ..+|-|||.|.+++.+..|. ....+....|.|.|-++.
T Consensus 282 cvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 282 CVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred eeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 689999999999999999998665 5655 7887665 35799999999999999987 466666679999998764
No 109
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.15 E-value=0.05 Score=54.15 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=58.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCce-eEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCe-eEEEEeC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDI-EYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDL-SVSISLA 76 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I-~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr-~I~V~~a 76 (280)
.|++.+|||++++|++|++.|..-|-. +-..... +.++.|++.+++.+.|-.|| .+.+..+++. .|+|+..
T Consensus 415 atlHlsnip~svsee~lk~~f~~~g~~vkafkff~--kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 415 ATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ--KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred hheeeccCCcccchhHHHHhhhcCCceEEeeeecC--CCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 479999999999999999999987754 3333332 34689999999999999998 5999999887 7888755
No 110
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=95.14 E-value=0.053 Score=49.26 Aligned_cols=61 Identities=18% Similarity=0.275 Sum_probs=54.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeec
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIV 67 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~ 67 (280)
...|.|++||++.+++||+++.-..|+|...++.+| +++.|+|-..++.+-|+ .|+.+.+.
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD----g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD----GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc----cceeeeeeehhhHHHHHHhhcccccc
Confidence 457999999999999999999999999999999887 48999999999999999 57776664
No 111
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.08 E-value=0.0018 Score=68.60 Aligned_cols=67 Identities=30% Similarity=0.331 Sum_probs=55.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeC--C-CCCcEEEEEecChHHHHHHHhhcCCeecCee
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSD--N-EWTQIAYVTFKDMQGAETAVLLSGATIVDLS 70 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d--~-~~~~~A~VtFed~~aA~tALlLnG~~L~gr~ 70 (280)
.++||+|+++.+.+.+|+++|+++|.|..+.+.-. . .-+|.||+.|.++..+..|+.++...+-|..
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~ 737 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKI 737 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhh
Confidence 46899999999999999999999999888887622 2 3368999999999999999976655555543
No 112
>PLN03120 nucleic acid binding protein; Provisional
Probab=95.04 E-value=0.0097 Score=55.86 Aligned_cols=50 Identities=26% Similarity=0.291 Sum_probs=40.6
Q ss_pred ccCHHHHHHHHhhhhccCcchHHH-------HHHhhhhhccCccccccccchhhhhh
Q 023572 119 ILGKDAVFKAKTFDEKHQFTSTAS-------AKVASFDKKIGFSEKISVGTSVVSDR 168 (280)
Q Consensus 119 vL~d~ai~KA~~fDekhgvSs~~~-------a~v~~lD~k~g~tek~~~g~~~v~~k 168 (280)
-|+-.+..+..+||+|.|+|.++. .++.++|+|||+|||......+..++
T Consensus 136 ~~ss~a~a~v~~~d~k~gltek~~~g~~~v~~~~k~vDeky~vs~kt~sa~~~~~~~ 192 (260)
T PLN03120 136 QLTSTASAKVASLDKKIGLSEKLSAGTAVVNEKVKEVDQKYQVSEKTKSALAAAEQK 192 (260)
T ss_pred chHHHHHHHHHhhhhhcCcccccccchHHHHHHHHhhhhhhchhHHHHHHHHHHHHH
Confidence 345677888899999999999865 68999999999999987766554433
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.94 E-value=0.055 Score=54.95 Aligned_cols=72 Identities=24% Similarity=0.254 Sum_probs=61.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHcc-cCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-----hcCCeecCeeEEEE
Q 023572 4 KTVKVSNVSLGATERGIKEFFS-FSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-----LSGATIVDLSVSIS 74 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS-~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-----LnG~~L~gr~I~V~ 74 (280)
|||||++|+--.+-++|-.+|. .||.|.++-|-.|++ ..|-+.|+|.+.++.-.|+. |+...|+- .|.|.
T Consensus 371 rTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~K-RVEIk 449 (520)
T KOG0129|consen 371 RTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDK-RVEIK 449 (520)
T ss_pred ceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccce-eeeec
Confidence 7999999999999999999999 789999999988853 46899999999999999873 66666654 67777
Q ss_pred eC
Q 023572 75 LA 76 (280)
Q Consensus 75 ~a 76 (280)
|.
T Consensus 450 PY 451 (520)
T KOG0129|consen 450 PY 451 (520)
T ss_pred ce
Confidence 65
No 114
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=94.77 E-value=0.036 Score=52.22 Aligned_cols=74 Identities=9% Similarity=0.125 Sum_probs=63.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
...||.+.|...++.+.|-.-|..+=.-..-+++++. ...+++||.|.++.++..|+ .|||.-++.++|.....
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 3579999999999999999999887766777777775 24689999999999999999 69999999999887543
No 115
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.54 E-value=0.15 Score=38.13 Aligned_cols=52 Identities=27% Similarity=0.313 Sum_probs=43.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccC---CceeEEEEeeCCCCCcEEEEEecChHHHHHHHh
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFS---GDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL 60 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~c---G~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl 60 (280)
..|+|.++.. .+.+||+.||..+ ....+|+.+.|. .|-|.|.++..|..||.
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT----SCNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC----cEEEEECCHHHHHHHHH
Confidence 3689999864 7889999999977 135799999773 69999999999999984
No 116
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.16 E-value=0.17 Score=44.20 Aligned_cols=65 Identities=25% Similarity=0.209 Sum_probs=52.0
Q ss_pred eEEEe----CCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCeeEEE
Q 023572 5 TVKVS----NVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSI 73 (280)
Q Consensus 5 TV~V~----NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V 73 (280)
||.|. |+.+.-+-+.|....+-+|.|.+|.+.. .+.|.|+|+|-.+|-.|+.--+...-|.-+..
T Consensus 88 TIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG----rqsavVvF~d~~SAC~Av~Af~s~~pgtm~qC 156 (166)
T PF15023_consen 88 TIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG----RQSAVVVFKDITSACKAVSAFQSRAPGTMFQC 156 (166)
T ss_pred eEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC----CceEEEEehhhHHHHHHHHhhcCCCCCceEEe
Confidence 77774 8888888888999999999999999973 57999999999999999954444444554444
No 117
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.03 E-value=0.23 Score=49.19 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=62.7
Q ss_pred cCeEEEeCCCC-CCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSL-GATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~-~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
+.-+-|-+|.- ....+.|-.+|--||.|++|++++.. .+.|.|++.|+.+++.|+ .||+.-|-|..|.|....
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 45577778876 45778899999999999999998753 589999999999999999 699999999999998763
No 118
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=93.97 E-value=0.09 Score=55.41 Aligned_cols=69 Identities=22% Similarity=0.262 Sum_probs=57.0
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeE--EEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEY--VEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 76 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~--I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a 76 (280)
-|.+.||++.+.-.|||.|||-. +|-+ |.|+. +.-+-|||.|...++|.-|++.++.+|.|..|+.-..
T Consensus 4 IIRLqnLP~tAga~DIR~FFSGL-~IPdGgVHIIG--Ge~GeaFI~FsTDeDARlaM~kdr~~i~g~~VrLlLS 74 (944)
T KOG4307|consen 4 IIRLQNLPMTAGASDIRTFFSGL-KIPDGGVHIIG--GEEGEAFIGFSTDEDARLAMTKDRLMIHGAEVRLLLS 74 (944)
T ss_pred EEEecCCcccccchHHHHhhccc-ccCCCceEEec--ccccceEEEecccchhhhhhhhcccceecceEEEEec
Confidence 57889999999999999999965 3432 44543 3468999999999999999999999999998887543
No 119
>PLN03121 nucleic acid binding protein; Provisional
Probab=93.90 E-value=0.058 Score=50.28 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=40.0
Q ss_pred cccccCHHHHHHHHhhhhccCcchHHH---HHHhhhhhccCccccccccch
Q 023572 116 KGFILGKDAVFKAKTFDEKHQFTSTAS---AKVASFDKKIGFSEKISVGTS 163 (280)
Q Consensus 116 ~GyvL~d~ai~KA~~fDekhgvSs~~~---a~v~~lD~k~g~tek~~~g~~ 163 (280)
.-+-|+-.|-.|.-+||++.|||.++. ..|.++|+|||++||.-+..+
T Consensus 146 E~h~lss~a~a~v~~~d~~iglt~k~~~g~~~vk~vDeky~vs~~tksA~~ 196 (243)
T PLN03121 146 ESHQVSATAAAKVAELSKRIGLTDKIFAGMEAVRSVDEKYHVSEFTKSAAT 196 (243)
T ss_pred HhcCccHhhhhhhhhhhhhccchhhhhhhHHHHHhhhhhhhhHHHHHHHHH
Confidence 345578899999999999999999996 588999999999987554443
No 120
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.12 E-value=0.052 Score=50.87 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=51.2
Q ss_pred HHHHHHcc-cCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCCC
Q 023572 18 RGIKEFFS-FSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 18 ~dLkeFFS-~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~~ 79 (280)
++|...|+ .+|+|+.+.+...-+ -.|-.||.|..+++++.|+ .|||.-+.|++|.-...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 45555566 899999998876643 3589999999999999999 69999999999998876543
No 121
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=93.05 E-value=0.27 Score=50.13 Aligned_cols=59 Identities=20% Similarity=0.285 Sum_probs=49.3
Q ss_pred HHHHHHcccCCceeEEEEeeC-CC-----CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 18 RGIKEFFSFSGDIEYVEMKSD-NE-----WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 18 ~dLkeFFS~cG~I~~I~l~~d-~~-----~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
++|+.=++.+|.|.+|++.+. .. ..|.-||+|.+.++.+.|+ .|+|..+.||.|..+..
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 344555778999999999887 31 2589999999999999999 59999999999887765
No 122
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.00 E-value=0.32 Score=46.92 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=55.4
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCee-EEEEeCCC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLS-VSISLAPD 78 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~-I~V~~a~~ 78 (280)
=|.|-++++...- -|...|+.||+|...-..+ +..+-+|.|.+.-.+..||-.||+.|+|.. |-|.++.|
T Consensus 199 WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~~---ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 199 WVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTPS---NGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred eEEEeccCccchh-HHHHHHHhhCeeeeeecCC---CCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 3677788886554 5667899999998776652 346999999999999999999999999876 56777643
No 123
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.15 E-value=0.34 Score=46.75 Aligned_cols=60 Identities=23% Similarity=0.136 Sum_probs=50.7
Q ss_pred HHHHHHHcccCCceeEEEEeeCCC----CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 17 ERGIKEFFSFSGDIEYVEMKSDNE----WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 17 E~dLkeFFS~cG~I~~I~l~~d~~----~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
|+++++=...||+|..|-|...++ ..---||+|+..+.+-.|+ .|||.-++||.+.-+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 567888889999999999987753 2347899999999999998 69999999999887655
No 124
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.01 E-value=0.26 Score=43.46 Aligned_cols=68 Identities=22% Similarity=0.147 Sum_probs=44.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHccc-CCce---eEEEEeeCC-----CCCcEEEEEecChHHHHHHH-hhcCCeecCee
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSF-SGDI---EYVEMKSDN-----EWTQIAYVTFKDMQGAETAV-LLSGATIVDLS 70 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~-cG~I---~~I~l~~d~-----~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~ 70 (280)
+..|.|.+|||..||++..+-.+. +|.- .++.-.... .....|||.|.+.+.+..-. .++|..+.|..
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 357999999999999998886664 6655 344422222 12468999999999877765 69998887654
No 125
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=91.73 E-value=0.21 Score=51.67 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=56.0
Q ss_pred CeEEEeCCCCCC--CH----HHHHHHcccCCceeEEEEeeCC--CCCcEEEEEecChHHHHHHH-hhcCCeecCee-EEE
Q 023572 4 KTVKVSNVSLGA--TE----RGIKEFFSFSGDIEYVEMKSDN--EWTQIAYVTFKDMQGAETAV-LLSGATIVDLS-VSI 73 (280)
Q Consensus 4 rTV~V~NIs~~t--TE----~dLkeFFS~cG~I~~I~l~~d~--~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~-I~V 73 (280)
..|.|-|+|--- .- .-|...||.+|+|..+.+..+. +..|+.|++|.+..+|+.|+ .|||..|+-+. ..|
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence 357777776521 22 2355889999999999998664 45799999999999999999 59999998654 555
Q ss_pred EeCC
Q 023572 74 SLAP 77 (280)
Q Consensus 74 ~~a~ 77 (280)
..-.
T Consensus 139 ~~f~ 142 (698)
T KOG2314|consen 139 RLFK 142 (698)
T ss_pred ehhh
Confidence 5443
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.57 E-value=0.041 Score=58.98 Aligned_cols=72 Identities=25% Similarity=0.287 Sum_probs=61.0
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEE
Q 023572 2 SIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSI 73 (280)
Q Consensus 2 s~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V 73 (280)
..+|+|++|+...+++.+|+.-|..+|+|+.|+|-.-. ....++||.|.+-..+..|. .+.|..|+...+.+
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 35899999999999999999999999999999997653 34679999999999998887 58888876554444
No 127
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=91.32 E-value=0.17 Score=49.75 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=60.2
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCC--ceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSG--DIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG--~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
..||+||-|.+|++||-+-....| .|.++++.... ...+||.|...+..+++.-+ +|--.+|.|+.=+|.++
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 589999999999999999888777 56666666553 34689999999999888887 69999999999888764
No 128
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=90.94 E-value=0.25 Score=46.64 Aligned_cols=75 Identities=24% Similarity=0.224 Sum_probs=61.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--CCCcEEEEEecChHHHHHHHh-hc----CCeecCeeEEEEeC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--EWTQIAYVTFKDMQGAETAVL-LS----GATIVDLSVSISLA 76 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~~~~~A~VtFed~~aA~tALl-Ln----G~~L~gr~I~V~~a 76 (280)
..++|.|+++.++.+.+.+-|+.+|.|+.--++-|+ ..++-..|.|.+.-.+..|+. ++ +-+..+++..|.|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 469999999999999999999999999987777665 346899999999999999884 32 34556788888876
Q ss_pred CC
Q 023572 77 PD 78 (280)
Q Consensus 77 ~~ 78 (280)
.-
T Consensus 112 eq 113 (275)
T KOG0115|consen 112 EQ 113 (275)
T ss_pred hc
Confidence 53
No 129
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.82 E-value=1.5 Score=35.09 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=38.5
Q ss_pred EEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh
Q 023572 6 VKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL 60 (280)
Q Consensus 6 V~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl 60 (280)
.+|+ .|...-..||.++|+.||.| +|..+.| ..|||...+.+.+..++.
T Consensus 12 Fhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d----TSAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 12 FHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND----TSAFVALHNRDQAKVVMN 60 (87)
T ss_dssp EEEE---TT--HHHHHHHCCCCCCE-EEEEECT----TEEEEEECCCHHHHHHHH
T ss_pred EEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC----CcEEEEeecHHHHHHHHH
Confidence 3455 89999999999999999985 6777765 489999999999999885
No 130
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.67 E-value=2.2 Score=35.17 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=47.6
Q ss_pred EEEeCCCCCCCHHHHHHHcccC-CceeEEEEeeCCCC-CcEEEEEecChHHHHHHH-hhcCCeecC
Q 023572 6 VKVSNVSLGATERGIKEFFSFS-GDIEYVEMKSDNEW-TQIAYVTFKDMQGAETAV-LLSGATIVD 68 (280)
Q Consensus 6 V~V~NIs~~tTE~dLkeFFS~c-G~I~~I~l~~d~~~-~~~A~VtFed~~aA~tAL-lLnG~~L~g 68 (280)
..+...|+.++-++|..|.+.| ..|.+++|++++.. .-.+.+.|.++++|..=. .+||..+..
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444555556666777666654 68999999999754 458889999999999876 699998865
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.63 E-value=0.23 Score=48.08 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=56.2
Q ss_pred EEEeCCCCCCCHHHH-H--HHcccCCceeEEEEeeCC------CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEe
Q 023572 6 VKVSNVSLGATERGI-K--EFFSFSGDIEYVEMKSDN------EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISL 75 (280)
Q Consensus 6 V~V~NIs~~tTE~dL-k--eFFS~cG~I~~I~l~~d~------~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~ 75 (280)
|||-+|++..-.+.+ + ++|..||+|..|.+..+. +...-+||||+..+.+..++ -.+|..++|+.|+...
T Consensus 80 vyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~ 159 (327)
T KOG2068|consen 80 VYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASL 159 (327)
T ss_pred hhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhh
Confidence 667778876644444 3 799999999999998754 23457999999999999999 5999999999966654
Q ss_pred C
Q 023572 76 A 76 (280)
Q Consensus 76 a 76 (280)
.
T Consensus 160 g 160 (327)
T KOG2068|consen 160 G 160 (327)
T ss_pred C
Confidence 3
No 132
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=86.40 E-value=0.35 Score=51.84 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=63.3
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEe
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISL 75 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~ 75 (280)
.|++.|.|+..|.+.++.+|+..|.+++++++... ...|.|+|.|.++..+..++ ..++..+..+.+.|..
T Consensus 738 ~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 738 SVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 58999999999999999999999999999988765 35799999999999999998 5888888888777765
No 133
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=86.17 E-value=0.43 Score=47.52 Aligned_cols=72 Identities=15% Similarity=0.030 Sum_probs=60.0
Q ss_pred cCeEEEeCCCCC-CCHHHHHHHcccCCceeEEEEeeCC-CCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEE
Q 023572 3 IKTVKVSNVSLG-ATERGIKEFFSFSGDIEYVEMKSDN-EWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSIS 74 (280)
Q Consensus 3 ~rTV~V~NIs~~-tTE~dLkeFFS~cG~I~~I~l~~d~-~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~ 74 (280)
.+++||+++++. ++-.+...||-|.+...-|.++.+. ....|||+.|.+..++.-+|..||..+.+++++..
T Consensus 52 sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~ 125 (479)
T KOG4676|consen 52 SRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKI 125 (479)
T ss_pred eeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccc
Confidence 378999999985 4677888999999988877777665 34578999999999999999999988888888644
No 134
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.61 E-value=2.2 Score=43.21 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=56.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcc-cCCceeEEEEeeCCCCC-cEEEEEecChHHHHHHH-hhcCCeecC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFS-FSGDIEYVEMKSDNEWT-QIAYVTFKDMQGAETAV-LLSGATIVD 68 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS-~cG~I~~I~l~~d~~~~-~~A~VtFed~~aA~tAL-lLnG~~L~g 68 (280)
++.+.+--+|...|-.||-.|.. ++-.|.+|++++++.+. =...|.|.+..+|.+-- .+||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 45788999999999999998885 66789999999987544 47899999999999987 699999875
No 135
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=85.42 E-value=0.38 Score=50.33 Aligned_cols=67 Identities=22% Similarity=0.210 Sum_probs=59.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
.+|||+||+..+..+-++-...+||-|.+.... .|+|..|.++.+.-.|+ +|+--.++|+.+.+...
T Consensus 41 ~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 41 DTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred ceeEecchhhhhhHHHHHHHHhhCCcchhhhhh------hhcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 589999999999999999999999998877654 39999999999988887 68889999998888764
No 136
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=84.85 E-value=0.47 Score=48.11 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=52.5
Q ss_pred CHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 16 TERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 16 TE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
|-.+|...|..+|+|..|.+-.. ..-|.|||....++-.|-...|..|++|.|+|-...
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred hHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhccccceecCceeEEEEec
Confidence 66789999999999999998654 568999999999999999999999999999997653
No 137
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=84.79 E-value=4.2 Score=40.66 Aligned_cols=68 Identities=22% Similarity=0.202 Sum_probs=56.0
Q ss_pred EEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeec--CeeEEEEeC
Q 023572 7 KVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIV--DLSVSISLA 76 (280)
Q Consensus 7 ~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~--gr~I~V~~a 76 (280)
.|-|--+.+|-+-|...-.-||+|.+|-|.... .=-|.|+|++-+.|..|- .|||+.|= -..|+|+.+
T Consensus 126 TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn--gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyA 196 (494)
T KOG1456|consen 126 TILNPQYPITVDVLYTICNPQGKVLRIVIFKKN--GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYA 196 (494)
T ss_pred EeecCccccchhhhhhhcCCCCceEEEEEEecc--ceeeEEeechhHHHHHHHhhcccccccccceeEEEEec
Confidence 345666789999999999999999999998763 347999999999999998 59999984 445666644
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.28 E-value=3 Score=37.26 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=45.3
Q ss_pred CHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhc--CCeecCeeEEEEeC
Q 023572 16 TERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLS--GATIVDLSVSISLA 76 (280)
Q Consensus 16 TE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLn--G~~L~gr~I~V~~a 76 (280)
....|++||+.++.+..+..++. .+-..|.|.+.+.|..|. .|+ +..+.|..++|...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 45789999999999988888754 678999999999999997 688 99999999999765
No 139
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=82.32 E-value=2.3 Score=35.24 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=35.4
Q ss_pred eEEEeCCCCCC---------CHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEe-cChHHHHHHHhhc
Q 023572 5 TVKVSNVSLGA---------TERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTF-KDMQGAETAVLLS 62 (280)
Q Consensus 5 TV~V~NIs~~t---------TE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtF-ed~~aA~tALlLn 62 (280)
++.|-|++... +-+.|++.|+.+..++-.-+....+..+++.|.| .+..+...|+.|.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~ 77 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLE 77 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHH
Confidence 57888886643 5678999998777665444444446679999999 5566888888665
No 140
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=82.04 E-value=5.9 Score=29.75 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=33.7
Q ss_pred CCCHHHHHHHcccCC-----ceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeC
Q 023572 14 GATERGIKEFFSFSG-----DIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 76 (280)
Q Consensus 14 ~tTE~dLkeFFS~cG-----~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a 76 (280)
.++..+|..++...+ .|-.|++.. .++||+-....+-..--.|++..+.|+.|.|+++
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~-----~~S~vev~~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD-----NFSFVEVPEEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S-----S-EEEEE-TT-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee-----eEEEEEECHHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 567889999997664 466777764 4899998877444443479999999999999874
No 141
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=74.49 E-value=3.1 Score=42.13 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=52.3
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCC-eecCeeEEEEeC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGA-TIVDLSVSISLA 76 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~-~L~gr~I~V~~a 76 (280)
.+|++||++..+..+|...|... .+...+ -.+++|||..-+...+..|+ .|||. ++.|..+.|...
T Consensus 3 klyignL~p~~~psdl~svfg~a------k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDA------KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred cccccccCCCCChHHHHHHhccc------cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 68999999999999999999865 111111 14689999999999999999 58885 578888888643
No 142
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=71.30 E-value=12 Score=29.06 Aligned_cols=53 Identities=23% Similarity=0.108 Sum_probs=42.1
Q ss_pred eEEEeCCCCCCCHHHHHHHccc-CC-ceeEEEEeeCCCCCcEEEEEecChHHHHH
Q 023572 5 TVKVSNVSLGATERGIKEFFSF-SG-DIEYVEMKSDNEWTQIAYVTFKDMQGAET 57 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~-cG-~I~~I~l~~d~~~~~~A~VtFed~~aA~t 57 (280)
.-|+-.+++.++..+|++.+.. || +|.+|....-+...+-|||++...+.|..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~ 69 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEE 69 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHH
Confidence 4678889999999999988874 56 78888887776667899999976655443
No 143
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=70.86 E-value=10 Score=39.62 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=44.8
Q ss_pred eEEEeCCCCCCCHHHHHHHcc--cCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH
Q 023572 5 TVKVSNVSLGATERGIKEFFS--FSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV 59 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS--~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL 59 (280)
-|.+.-||..+-+++|+-+|+ .|=++.++++--.+ -=||||++..+|..|.
T Consensus 177 IvilREIpettp~e~Vk~lf~~encPk~iscefa~N~----nWyITfesd~DAQqAy 229 (684)
T KOG2591|consen 177 IVILREIPETTPIEVVKALFKGENCPKVISCEFAHND----NWYITFESDTDAQQAY 229 (684)
T ss_pred EEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC----ceEEEeecchhHHHHH
Confidence 478899999999999999997 59999999987654 4799999999999886
No 144
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=70.50 E-value=5.3 Score=43.55 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=60.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecC--eeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVD--LSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~g--r~I~V~~a~ 77 (280)
+.++|+++.+.+....|..-|..+|.|..|++.- ..-+|||.|++...+..|+ .|-|.-|++ +.|.|..+.
T Consensus 456 tr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h---gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 456 TRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH---GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred eeeccCCCCCCChHHHHHHHhhccCcceeeeccc---CCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 4589999999999999999999999999988842 2459999999999999999 499999986 457776553
No 145
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=70.30 E-value=11 Score=29.84 Aligned_cols=53 Identities=23% Similarity=0.108 Sum_probs=43.1
Q ss_pred eEEEeCCCCCCCHHHHHHHccc-CC-ceeEEEEeeCCCCCcEEEEEecChHHHHH
Q 023572 5 TVKVSNVSLGATERGIKEFFSF-SG-DIEYVEMKSDNEWTQIAYVTFKDMQGAET 57 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~-cG-~I~~I~l~~d~~~~~~A~VtFed~~aA~t 57 (280)
..|+-.+++.++..+|++.+.. || +|.+|....-....+-|||+|...+.|..
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~ 76 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEE 76 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHH
Confidence 4677788999999999999874 56 88899888777667899999977766554
No 146
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=70.11 E-value=2.3 Score=40.35 Aligned_cols=71 Identities=18% Similarity=-0.027 Sum_probs=58.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHHhhcCC-eecCeeEEEE
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAVLLSGA-TIVDLSVSIS 74 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tALlLnG~-~L~gr~I~V~ 74 (280)
.+.+++++++.+.+.++..||...|......+.... -..+++++.|...+.+..+|.+++. .+.++.+...
T Consensus 89 ~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 89 STFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKD 163 (285)
T ss_pred ccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCc
Confidence 578999999999999999999999987777766533 2468999999999999999999996 5555554443
No 147
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=68.17 E-value=7.7 Score=29.23 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=16.2
Q ss_pred HHHHHHcccCCceeEEEEe
Q 023572 18 RGIKEFFSFSGDIEYVEMK 36 (280)
Q Consensus 18 ~dLkeFFS~cG~I~~I~l~ 36 (280)
.+||+|||..|+|.-+-+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999776664
No 148
>PF01296 Galanin: Galanin; InterPro: IPR008174 Galanin is a peptide hormone that controls various biological activities []. Galanin-like immuno-reactivity has been found in the central and peripheral nervous systems of mammals, with high concentrations demonstrated in discrete regions of the central nervous system, including the median eminence, hypothalamus, arcuate nucleus, septum, neuro-intermediate lobe of the pituitary, and the spinal cord. Its localisation within neurosecretory granules suggests that galanin may function as a neurotransmitter, and it has been shown to coexist with a variety of other peptide and amine neurotransmitters within individual neurons []. Although the precise physiological role of galanin is uncertain, it has a number of pharmacological properties: it stimulates food intake, when injected into the third ventricle of rats; it increases levels of plasma growth hormone and prolactin, and decreases dopamine levels in the median eminence []; and infusion into humans results in hyperglycemia and glucose intolerance, and inhibits pancreatic release of insulin, somatostatin and pancreatic peptide. Galanin also modulates smooth muscle contractility within the gastro-intestinal and genito-urinary tracts, all such activities suggesting that the hormone may play an important role in the nervous modulation of endocrine and smooth muscle function []. Galanin is a 29 amino acid peptide processed from a larger precursor protein. Except in human, galanin is C-terminally amidated. Its sequence is highly conserved and the first 14 residues are identical in all currently known sequences.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=67.24 E-value=1.2 Score=28.55 Aligned_cols=26 Identities=27% Similarity=0.657 Sum_probs=22.5
Q ss_pred HhhcccccCHHHHHHHHhhhhccCcc
Q 023572 113 MLAKGFILGKDAVFKAKTFDEKHQFT 138 (280)
Q Consensus 113 ~LA~GyvL~d~ai~KA~~fDekhgvS 138 (280)
+-..||.||..+|.-=+.|-+|||+.
T Consensus 4 lnsagyLlGPhaiD~HRSf~DK~Gla 29 (29)
T PF01296_consen 4 LNSAGYLLGPHAIDNHRSFGDKHGLA 29 (29)
T ss_pred ccccceEeccccccCccccccccCCC
Confidence 34579999999999999999999974
No 149
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=66.26 E-value=6.5 Score=36.96 Aligned_cols=62 Identities=18% Similarity=0.071 Sum_probs=43.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC-------------------CCcEEEEEecChHHHHHHHhhcCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE-------------------WTQIAYVTFKDMQGAETAVLLSGA 64 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~-------------------~~~~A~VtFed~~aA~tALlLnG~ 64 (280)
+++|+-|||+.+|++.|++|-+.||-+..+.+....+ ...+|+++|.-+.-+..+..|-+.
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~~e~gl~es~~~ar~sl~~p~~v~~~~~a~k~~~~ps~~~c~~alk~~ 120 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYNDEFGLHESDLSARTSLLMPSTVNEKRYAPKFVDAPSINNCWNALKKY 120 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhhheecccchhhhhCCchhhhhhccCCcccceeeccceeecchHHHHHhccCcc
Confidence 5799999999999999999999999777666543321 124666666655555444444443
Q ss_pred e
Q 023572 65 T 65 (280)
Q Consensus 65 ~ 65 (280)
.
T Consensus 121 ~ 121 (261)
T KOG4008|consen 121 S 121 (261)
T ss_pred c
Confidence 3
No 150
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=57.42 E-value=7.8 Score=30.90 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.3
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHc
Q 023572 1 MSIKTVKVSNVSLGATERGIKEFF 24 (280)
Q Consensus 1 Ms~rTV~V~NIs~~tTE~dLkeFF 24 (280)
+|.|||.|+|||....|++|+|..
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 467999999999999999999754
No 151
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=49.70 E-value=15 Score=38.67 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=52.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHcc-cCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCee---cCeeEEEEeC
Q 023572 4 KTVKVSNVSLGATERGIKEFFS-FSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATI---VDLSVSISLA 76 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS-~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L---~gr~I~V~~a 76 (280)
..||+.||---.|.-+|+++.. .||.|+.. ++.. -..-|||.|.+.+.|-.-. .|+|-.- +++.|+|...
T Consensus 445 nvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk--IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 445 NVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK--IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred ceEeeecccccchHHHHHHHHhhccCchHHH-HHHH--hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 4699999999999999999999 89998877 3311 1357999998776555444 5888654 5677777654
No 152
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=45.06 E-value=66 Score=28.04 Aligned_cols=55 Identities=16% Similarity=0.058 Sum_probs=42.7
Q ss_pred eEEEeCCCCCCCHHHHHHHccc-CC-ceeEEEEeeCCCCCcEEEEEecChH-HHHHHH
Q 023572 5 TVKVSNVSLGATERGIKEFFSF-SG-DIEYVEMKSDNEWTQIAYVTFKDMQ-GAETAV 59 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~-cG-~I~~I~l~~d~~~~~~A~VtFed~~-aA~tAL 59 (280)
.-+|-.++..++..+|++.+.. || +|..|..+.-++..+-|||++...+ +.+-|-
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 4677888999999999988874 55 7888888777666789999996655 455553
No 153
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.64 E-value=1.1e+02 Score=32.47 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=55.4
Q ss_pred cCeEEEeCCCC-CCCHHHHHHHcc-cC---CceeEEEEeeCC------------CC------------------------
Q 023572 3 IKTVKVSNVSL-GATERGIKEFFS-FS---GDIEYVEMKSDN------------EW------------------------ 41 (280)
Q Consensus 3 ~rTV~V~NIs~-~tTE~dLkeFFS-~c---G~I~~I~l~~d~------------~~------------------------ 41 (280)
.+.+-|.|+.| .+.-++|.-+|+ || |.|.+|.|++.. |+
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~ 253 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDV 253 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhH
Confidence 46789999999 568889988885 55 699999998742 11
Q ss_pred --------------CcEEEEEecChHHHHHHH-hhcCCeecCeeEEEE
Q 023572 42 --------------TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSIS 74 (280)
Q Consensus 42 --------------~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~ 74 (280)
.=||.|+|.+...+..-. .++|.++......+.
T Consensus 254 ~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 254 DREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred HHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 017899999998888776 599999987665543
No 154
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=38.08 E-value=24 Score=38.62 Aligned_cols=70 Identities=24% Similarity=0.347 Sum_probs=55.5
Q ss_pred CCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCee--cCeeEEEEeC---CCCCCC
Q 023572 10 NVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATI--VDLSVSISLA---PDYQLP 82 (280)
Q Consensus 10 NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L--~gr~I~V~~a---~~~~~~ 82 (280)
|..-..+-.-|..+|+.+|.+.++...++. ..|.|.|..-+.+..|+ .|.|.++ .|.+.+|..+ +.|++|
T Consensus 305 nn~v~~tSssL~~l~s~yg~v~s~wtlr~~---N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ep~ 380 (1007)
T KOG4574|consen 305 NNAVNLTSSSLATLCSDYGSVASAWTLRDL---NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYEPP 380 (1007)
T ss_pred cccccchHHHHHHHHHhhcchhhheecccc---cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccccCC
Confidence 334466788899999999999999998774 48999999999999998 5999875 6777888755 345443
No 155
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=37.85 E-value=68 Score=25.48 Aligned_cols=50 Identities=26% Similarity=0.128 Sum_probs=36.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHccc-CC-ceeEEEEeeCCC-------------CCcEEEEEecChH
Q 023572 4 KTVKVSNVSLGATERGIKEFFSF-SG-DIEYVEMKSDNE-------------WTQIAYVTFKDMQ 53 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~-cG-~I~~I~l~~d~~-------------~~~~A~VtFed~~ 53 (280)
...++-.+++.+|..||++.|.. || +|.+|....-.+ ..+.|||++...+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~kr~~~~~g~~~~~KKA~VtL~~g~ 84 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRFGRRIGKRSDWKKAIVTLAEGQ 84 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCceeeecccccccCCcEEEEEEcCCCC
Confidence 35677889999999999999974 56 677777664431 2367888887554
No 156
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=36.60 E-value=70 Score=26.78 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=36.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEe
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTF 49 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtF 49 (280)
....++.|++...+..++..+|..+|.|....+..........+..|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 225 SDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred cceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccc
Confidence 45789999999999999999999999997777766554333344444
No 157
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=35.31 E-value=1.6e+02 Score=20.81 Aligned_cols=49 Identities=20% Similarity=0.271 Sum_probs=35.2
Q ss_pred HHHHHHHcccCC-ceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCee
Q 023572 17 ERGIKEFFSFSG-DIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATI 66 (280)
Q Consensus 17 E~dLkeFFS~cG-~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L 66 (280)
=.+|-+.|+..| .|.++......+ ..+-.+.+.+++.+...|.-+|-.+
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHHHCCCEE
Confidence 457788898887 789998766544 4666677788878888776666543
No 158
>CHL00030 rpl23 ribosomal protein L23
Probab=32.55 E-value=78 Score=25.40 Aligned_cols=50 Identities=16% Similarity=0.136 Sum_probs=37.0
Q ss_pred eEEEeCCCCCCCHHHHHHHccc-CC-ceeEEEEeeCCCC-------------CcEEEEEecChHH
Q 023572 5 TVKVSNVSLGATERGIKEFFSF-SG-DIEYVEMKSDNEW-------------TQIAYVTFKDMQG 54 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~-cG-~I~~I~l~~d~~~-------------~~~A~VtFed~~a 54 (280)
..|+--+++.++..+|++.|.. || +|..|....-++. .+-|||++.+.+.
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k~kr~~~~~G~~~~~KKAiVtL~~g~~ 84 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKKRRMGPIMGHKMHYKRMIITLQPGYS 84 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCCccccCCcccccCCcEEEEEEcCCcCE
Confidence 4677788999999999988874 55 7888877654321 3678888876554
No 159
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=31.83 E-value=1e+02 Score=24.18 Aligned_cols=52 Identities=23% Similarity=0.140 Sum_probs=38.3
Q ss_pred eEEEeCCCCCCCHHHHHHHcc-cCC-ceeEEEEeeCCC-----C--------CcEEEEEecChHHHH
Q 023572 5 TVKVSNVSLGATERGIKEFFS-FSG-DIEYVEMKSDNE-----W--------TQIAYVTFKDMQGAE 56 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS-~cG-~I~~I~l~~d~~-----~--------~~~A~VtFed~~aA~ 56 (280)
..++-.+++.+|..||++++. -|| +|.+|....-.+ . .+.|||++.+.+...
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~i~ 87 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDKIP 87 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSCHH
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCccc
Confidence 356778899999999999997 356 777887764431 1 268999999876544
No 160
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=31.44 E-value=83 Score=24.97 Aligned_cols=47 Identities=32% Similarity=0.266 Sum_probs=36.7
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKD 51 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed 51 (280)
-|||+|++..+.|.=.....+.|++=.-+-+.++....||.|-++-+
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G~ 73 (86)
T PF09707_consen 27 GVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLGD 73 (86)
T ss_pred CcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeCC
Confidence 49999999999998888888888875555555665667888888743
No 161
>smart00071 Galanin Galanin. Galanin [1,2,3] is a neuropeptide that controls various biological activities: it regulates the release growth hormone, inhibits the release of insulin and somatostatin, contracts smooth muscle of the gastrointestinal and genitourinary tract and may be involved in the control of adrenal secretion
Probab=30.46 E-value=12 Score=30.43 Aligned_cols=28 Identities=29% Similarity=0.642 Sum_probs=24.0
Q ss_pred HhhcccccCHHHHHHHHhhhhccCcchH
Q 023572 113 MLAKGFILGKDAVFKAKTFDEKHQFTST 140 (280)
Q Consensus 113 ~LA~GyvL~d~ai~KA~~fDekhgvSs~ 140 (280)
+=..||.||.++|.--+.|-+|||++.+
T Consensus 16 lnsagyllgp~aid~hrs~~dk~g~~gK 43 (103)
T smart00071 16 LNSAGYLLGPHAIDNHRSFHDKHGLTGK 43 (103)
T ss_pred eccCceeeCccccccccccccCCCcccc
Confidence 4467999999999999999999998764
No 162
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=27.50 E-value=1.4e+02 Score=26.38 Aligned_cols=36 Identities=22% Similarity=0.155 Sum_probs=28.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHccc-CC-ceeEEEEeeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSF-SG-DIEYVEMKSDN 39 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~-cG-~I~~I~l~~d~ 39 (280)
...|+-.+++.++.-+|++.|.. || +|.+|..+.-+
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~ 59 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVD 59 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecC
Confidence 35788899999999999998874 56 78888877544
No 163
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=27.35 E-value=2e+02 Score=19.42 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=31.8
Q ss_pred HHHHHHcccCC-ceeEEEEeeCCCCCcEEEEEecChHHHHHHH
Q 023572 18 RGIKEFFSFSG-DIEYVEMKSDNEWTQIAYVTFKDMQGAETAV 59 (280)
Q Consensus 18 ~dLkeFFS~cG-~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL 59 (280)
.+|-+.|+..| .|.++......+......+.+++.+.|..+|
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 45667777776 8989987766545678889999988777665
No 164
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.93 E-value=2.4e+02 Score=19.77 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=34.4
Q ss_pred CHHHHHHHcccCC-ceeEEEEeeCCC-CCcEEEEEec--ChHHHHHHHhhcCCeec
Q 023572 16 TERGIKEFFSFSG-DIEYVEMKSDNE-WTQIAYVTFK--DMQGAETAVLLSGATIV 67 (280)
Q Consensus 16 TE~dLkeFFS~cG-~I~~I~l~~d~~-~~~~A~VtFe--d~~aA~tALlLnG~~L~ 67 (280)
.-..|-++|+.+| .|.++....... .....+|.++ +++.+..+|.-+|-.+.
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHCCCeee
Confidence 4567889999997 788887655432 2344556665 66677777776665553
No 165
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=23.97 E-value=22 Score=34.54 Aligned_cols=63 Identities=22% Similarity=0.400 Sum_probs=47.4
Q ss_pred CeEEEeCCCCC------------CCHHHHHHHcccCCceeEEEEeeCC-------CC-C-----c---------EEEEEe
Q 023572 4 KTVKVSNVSLG------------ATERGIKEFFSFSGDIEYVEMKSDN-------EW-T-----Q---------IAYVTF 49 (280)
Q Consensus 4 rTV~V~NIs~~------------tTE~dLkeFFS~cG~I~~I~l~~d~-------~~-~-----~---------~A~VtF 49 (280)
-|||+.+||-. -+|+-|+.-|..+|.|..|+|+-.+ +. + + -|||.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 37888888753 4788999999999999999987543 10 1 1 367888
Q ss_pred cChHHHHHHH-hhcCCee
Q 023572 50 KDMQGAETAV-LLSGATI 66 (280)
Q Consensus 50 ed~~aA~tAL-lLnG~~L 66 (280)
-...+..+|+ .|.|..+
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 8888888888 5777654
No 166
>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]
Probab=23.48 E-value=81 Score=25.46 Aligned_cols=33 Identities=30% Similarity=0.339 Sum_probs=19.3
Q ss_pred HHHHHHHhhhhccC-cchHHHHHH-hhhhhccCcc
Q 023572 123 DAVFKAKTFDEKHQ-FTSTASAKV-ASFDKKIGFS 155 (280)
Q Consensus 123 ~ai~KA~~fDekhg-vSs~~~a~v-~~lD~k~g~t 155 (280)
+|+.-|++-=+++. +......+| .+||+|||.+
T Consensus 20 ~a~~~a~~al~~f~~~~k~iA~~iKkefDkkyG~~ 54 (90)
T KOG3430|consen 20 EAIELARQALEKFNVIEKDIAAFIKKEFDKKYGPT 54 (90)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcCCc
Confidence 44444444444444 555555666 4789998865
No 167
>PF14160 FAM110_C: Centrosome-associated C terminus
Probab=22.60 E-value=47 Score=27.69 Aligned_cols=14 Identities=21% Similarity=0.650 Sum_probs=12.0
Q ss_pred CCHHHHHHHcccCC
Q 023572 15 ATERGIKEFFSFSG 28 (280)
Q Consensus 15 tTE~dLkeFFS~cG 28 (280)
..-.+|..||.+||
T Consensus 18 ~~~sele~FF~~cG 31 (111)
T PF14160_consen 18 RALSELERFFNYCG 31 (111)
T ss_pred ccHHHHHHHHHHcC
Confidence 34589999999999
No 168
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=21.48 E-value=1e+02 Score=28.64 Aligned_cols=31 Identities=35% Similarity=0.422 Sum_probs=21.4
Q ss_pred EEEEecChHHHHHHHhh-cCCeecCeeEEEEeCC
Q 023572 45 AYVTFKDMQGAETAVLL-SGATIVDLSVSISLAP 77 (280)
Q Consensus 45 A~VtFed~~aA~tALlL-nG~~L~gr~I~V~~a~ 77 (280)
|||+|+++.+|..|+.+ .... ++.+.|.+++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC
Confidence 79999999999999852 2222 2444666654
Done!