Query 023572
Match_columns 280
No_of_seqs 272 out of 1168
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 09:07:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.7 2.4E-17 8.3E-22 128.5 10.4 75 3-77 19-97 (99)
2 4f25_A Polyadenylate-binding p 99.7 3.3E-17 1.1E-21 130.1 9.6 78 1-78 3-82 (115)
3 3ucg_A Polyadenylate-binding p 99.7 1.5E-16 5.1E-21 118.9 11.2 76 3-78 6-84 (89)
4 4a8x_A RNA-binding protein wit 99.7 1.3E-16 4.4E-21 118.8 10.2 77 1-77 2-83 (88)
5 1whw_A Hypothetical protein ri 99.7 2.8E-16 9.5E-21 120.1 11.3 78 2-79 7-88 (99)
6 2cq3_A RNA-binding protein 9; 99.7 5.2E-16 1.8E-20 119.6 12.9 76 3-78 15-92 (103)
7 1s79_A Lupus LA protein; RRM, 99.7 3.8E-17 1.3E-21 128.8 6.6 76 3-78 11-88 (103)
8 3s7r_A Heterogeneous nuclear r 99.7 2.2E-16 7.6E-21 118.0 10.3 74 3-76 11-87 (87)
9 2dgs_A DAZ-associated protein 99.7 4E-16 1.4E-20 119.5 11.8 76 3-78 10-88 (99)
10 3s8s_A Histone-lysine N-methyl 99.7 2.9E-16 1E-20 124.9 10.7 75 3-77 6-84 (110)
11 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.3E-16 7.8E-21 117.0 9.4 74 3-76 7-84 (85)
12 1x4a_A Splicing factor, argini 99.7 5.2E-16 1.8E-20 121.0 11.7 77 3-79 22-99 (109)
13 2ywk_A Putative RNA-binding pr 99.7 3.2E-16 1.1E-20 118.7 10.0 75 3-77 16-93 (95)
14 3md1_A Nuclear and cytoplasmic 99.7 4.6E-16 1.6E-20 114.9 10.6 75 3-77 1-79 (83)
15 2dgx_A KIAA0430 protein; RRM d 99.7 3E-16 1E-20 120.5 9.9 76 3-78 9-89 (96)
16 2mss_A Protein (musashi1); RNA 99.7 1.3E-16 4.5E-21 116.2 7.3 72 5-76 1-75 (75)
17 3bs9_A Nucleolysin TIA-1 isofo 99.7 3.5E-16 1.2E-20 116.5 9.6 75 3-77 6-84 (87)
18 3p5t_L Cleavage and polyadenyl 99.7 7.2E-17 2.5E-21 122.3 5.9 75 4-78 2-82 (90)
19 2dnz_A Probable RNA-binding pr 99.7 8.2E-16 2.8E-20 116.4 11.6 76 3-78 5-84 (95)
20 2cqi_A Nucleolysin TIAR; RNA r 99.7 7.4E-16 2.5E-20 118.8 11.5 76 3-78 15-92 (103)
21 2d9p_A Polyadenylate-binding p 99.7 7.8E-16 2.7E-20 118.6 11.4 78 2-79 14-93 (103)
22 2lkz_A RNA-binding protein 5; 99.7 2.4E-16 8.1E-21 123.0 8.6 75 4-78 10-94 (95)
23 2cpf_A RNA binding motif prote 99.7 8.5E-16 2.9E-20 117.2 11.4 78 2-79 4-88 (98)
24 2dgv_A HnRNP M, heterogeneous 99.7 4.9E-16 1.7E-20 117.0 9.6 77 3-79 8-86 (92)
25 1x5t_A Splicing factor 3B subu 99.6 7.1E-16 2.4E-20 117.0 10.4 77 2-78 4-85 (96)
26 2e5h_A Zinc finger CCHC-type a 99.6 7.2E-16 2.5E-20 116.5 10.2 74 3-76 16-93 (94)
27 2do4_A Squamous cell carcinoma 99.6 7.5E-16 2.6E-20 118.2 10.3 76 2-77 16-94 (100)
28 2dng_A Eukaryotic translation 99.6 1.3E-15 4.4E-20 117.7 11.7 76 3-79 15-93 (103)
29 2x1f_A MRNA 3'-END-processing 99.6 8.5E-16 2.9E-20 117.2 10.5 76 3-78 2-81 (96)
30 3lqv_A PRE-mRNA branch site pr 99.6 6.3E-16 2.2E-20 121.3 10.1 75 3-77 8-83 (115)
31 2dnm_A SRP46 splicing factor; 99.6 7.2E-16 2.5E-20 118.8 10.2 77 3-79 13-93 (103)
32 2dgo_A Cytotoxic granule-assoc 99.6 1.9E-15 6.6E-20 118.6 12.8 79 3-81 15-97 (115)
33 2e5g_A U6 snRNA-specific termi 99.6 9E-16 3.1E-20 116.9 10.5 75 3-79 8-82 (94)
34 2cqc_A Arginine/serine-rich sp 99.6 7.1E-16 2.4E-20 116.5 9.8 75 3-77 15-93 (95)
35 2cqb_A Peptidyl-prolyl CIS-tra 99.6 7.2E-16 2.5E-20 118.4 10.0 76 3-78 12-91 (102)
36 2cq0_A Eukaryotic translation 99.6 1E-15 3.4E-20 118.0 10.8 76 3-78 15-94 (103)
37 1wi8_A EIF-4B, eukaryotic tran 99.6 7.6E-16 2.6E-20 119.1 10.1 75 3-78 15-93 (104)
38 2cpz_A CUG triplet repeat RNA- 99.6 1E-15 3.5E-20 120.4 10.7 76 3-78 25-104 (115)
39 2db1_A Heterogeneous nuclear r 99.6 4.2E-16 1.5E-20 124.6 8.5 74 3-76 17-95 (118)
40 2cq4_A RNA binding motif prote 99.6 6.2E-16 2.1E-20 121.4 9.0 74 3-76 25-101 (114)
41 2dnn_A RNA-binding protein 12; 99.6 7.4E-16 2.5E-20 123.1 9.6 73 4-77 17-91 (109)
42 1x5s_A Cold-inducible RNA-bind 99.6 6.4E-16 2.2E-20 118.7 8.8 76 3-78 12-91 (102)
43 1p27_B RNA-binding protein 8A; 99.6 7.2E-16 2.5E-20 119.2 9.0 75 3-77 23-101 (106)
44 1wez_A HnRNP H', FTP-3, hetero 99.6 8.8E-16 3E-20 120.2 9.5 74 3-77 15-90 (102)
45 2dh8_A DAZ-associated protein 99.6 6.3E-16 2.2E-20 119.5 8.5 77 3-79 16-95 (105)
46 1wg5_A Heterogeneous nuclear r 99.6 8.1E-16 2.8E-20 119.8 9.2 75 3-77 15-92 (104)
47 2jwn_A Embryonic polyadenylate 99.6 1E-15 3.5E-20 121.6 9.9 76 3-78 36-114 (124)
48 2err_A Ataxin-2-binding protei 99.6 1.2E-15 4E-20 120.1 10.0 75 3-77 29-105 (109)
49 3ulh_A THO complex subunit 4; 99.6 1.2E-15 4.1E-20 118.1 9.9 75 3-77 29-106 (107)
50 2lxi_A RNA-binding protein 10; 99.6 4.1E-16 1.4E-20 119.4 7.0 74 4-77 2-81 (91)
51 1x4c_A Splicing factor, argini 99.6 1.5E-15 5E-20 118.9 10.1 72 3-78 15-92 (108)
52 2cph_A RNA binding motif prote 99.6 2.2E-15 7.4E-20 116.4 10.9 76 3-78 15-96 (107)
53 2do0_A HnRNP M, heterogeneous 99.6 3E-15 1E-19 117.1 11.7 76 3-78 15-93 (114)
54 2dnq_A RNA-binding protein 4B; 99.6 2.9E-15 9.9E-20 113.0 11.1 72 3-79 8-80 (90)
55 2cpy_A RNA-binding protein 12; 99.6 7.7E-16 2.6E-20 121.8 8.2 75 3-77 15-92 (114)
56 2krb_A Eukaryotic translation 99.6 4.7E-16 1.6E-20 115.4 6.5 71 3-73 1-80 (81)
57 1iqt_A AUF1, heterogeneous nuc 99.6 3.1E-16 1.1E-20 113.9 5.3 72 5-76 1-75 (75)
58 1x5u_A Splicing factor 3B subu 99.6 1.4E-15 4.9E-20 117.3 9.3 76 3-78 15-94 (105)
59 2cpi_A CCR4-NOT transcription 99.6 1.1E-15 3.7E-20 120.4 8.7 75 3-77 15-99 (111)
60 2khc_A Testis-specific RNP-typ 99.6 1.5E-15 5E-20 119.8 9.4 74 3-76 40-117 (118)
61 2dnh_A Bruno-like 5, RNA bindi 99.6 3E-15 1E-19 115.5 10.9 76 3-78 15-96 (105)
62 3ns6_A Eukaryotic translation 99.6 6.4E-16 2.2E-20 119.9 7.1 75 3-77 6-91 (100)
63 2kt5_A RNA and export factor-b 99.6 2.5E-15 8.6E-20 119.8 10.7 77 3-79 35-114 (124)
64 2div_A TRNA selenocysteine ass 99.6 1.6E-15 5.6E-20 115.8 9.2 76 3-78 9-93 (99)
65 2dnp_A RNA-binding protein 14; 99.6 2.4E-15 8.1E-20 113.5 10.0 72 3-79 9-81 (90)
66 2la6_A RNA-binding protein FUS 99.6 1.8E-15 6.3E-20 116.0 9.5 74 3-76 13-98 (99)
67 1oo0_B CG8781-PA, drosophila Y 99.6 1.9E-15 6.7E-20 117.7 9.8 75 3-77 26-104 (110)
68 1x4h_A RNA-binding protein 28; 99.6 3.2E-15 1.1E-19 116.1 11.0 76 3-78 15-100 (111)
69 2dgw_A Probable RNA-binding pr 99.6 1.9E-15 6.4E-20 114.0 9.3 74 3-77 10-85 (91)
70 1x4g_A Nucleolysin TIAR; struc 99.6 3E-15 1E-19 116.9 10.8 73 3-78 25-98 (109)
71 2nlw_A Eukaryotic translation 99.6 1.2E-15 4.2E-20 119.0 8.5 77 3-79 15-100 (105)
72 2ki2_A SS-DNA binding protein 99.6 3E-16 1E-20 118.0 4.7 75 4-79 2-80 (90)
73 2lmi_A GRSF-1, G-rich sequence 99.6 4.7E-16 1.6E-20 121.7 6.0 75 3-77 11-90 (107)
74 1x4b_A Heterogeneous nuclear r 99.6 3.4E-15 1.2E-19 117.5 11.0 76 3-78 27-105 (116)
75 2cqd_A RNA-binding region cont 99.6 4.7E-15 1.6E-19 116.8 11.7 75 3-78 17-95 (116)
76 2fy1_A RNA-binding motif prote 99.6 3.9E-15 1.3E-19 118.7 11.1 76 3-78 7-85 (116)
77 2dgt_A RNA-binding protein 30; 99.6 4.4E-15 1.5E-19 112.4 10.9 71 3-78 10-81 (92)
78 2rs2_A Musashi-1, RNA-binding 99.6 3.7E-15 1.3E-19 117.4 10.9 75 3-77 25-102 (109)
79 2jvr_A Nucleolar protein 3; RN 99.6 1.3E-15 4.3E-20 122.4 8.1 74 3-77 28-103 (111)
80 1p1t_A Cleavage stimulation fa 99.6 2E-15 6.9E-20 116.0 8.8 75 3-77 8-86 (104)
81 2ek1_A RNA-binding protein 12; 99.6 1.1E-15 3.8E-20 115.7 7.2 74 4-77 16-93 (95)
82 2ytc_A PRE-mRNA-splicing facto 99.6 3E-15 1E-19 111.1 9.4 71 3-76 12-84 (85)
83 2jrs_A RNA-binding protein 39; 99.6 3.2E-15 1.1E-19 117.8 10.0 75 3-77 26-104 (108)
84 2j76_E EIF-4B, EIF4B, eukaryot 99.6 9.7E-16 3.3E-20 118.4 6.8 74 3-77 19-96 (100)
85 2cpe_A RNA-binding protein EWS 99.6 4.2E-15 1.4E-19 116.3 10.5 76 3-78 15-102 (113)
86 2hgl_A HNRPF protein, heteroge 99.6 1.3E-15 4.3E-20 126.5 7.9 74 3-76 44-122 (136)
87 2hzc_A Splicing factor U2AF 65 99.6 2.7E-15 9.1E-20 111.6 8.8 70 3-75 6-86 (87)
88 2dgp_A Bruno-like 4, RNA bindi 99.6 3.2E-15 1.1E-19 115.5 9.5 76 3-78 13-95 (106)
89 2cpj_A Non-POU domain-containi 99.6 3.2E-15 1.1E-19 114.6 9.3 73 3-78 15-88 (99)
90 2cqg_A TDP-43, TAR DNA-binding 99.6 7.8E-15 2.7E-19 113.0 11.4 76 3-79 15-93 (103)
91 1x4e_A RNA binding motif, sing 99.6 8.3E-16 2.8E-20 114.4 5.6 74 3-76 5-82 (85)
92 1why_A Hypothetical protein ri 99.6 4.4E-15 1.5E-19 113.5 9.5 72 3-77 17-91 (97)
93 2la4_A Nuclear and cytoplasmic 99.6 3.2E-15 1.1E-19 114.8 8.7 72 3-77 27-99 (101)
94 2cqp_A RNA-binding protein 12; 99.6 2.1E-15 7.1E-20 115.0 7.6 75 3-77 15-93 (98)
95 1u6f_A Tcubp1, RNA-binding pro 99.6 6.1E-15 2.1E-19 119.3 10.7 77 3-79 42-122 (139)
96 2hvz_A Splicing factor, argini 99.6 3.2E-15 1.1E-19 114.8 8.6 73 4-78 1-74 (101)
97 1wel_A RNA-binding protein 12; 99.6 8.2E-16 2.8E-20 123.1 5.4 74 3-76 25-101 (124)
98 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2E-15 6.9E-20 109.9 7.0 72 4-76 1-76 (77)
99 3n9u_C Cleavage and polyadenyl 99.6 4E-15 1.4E-19 125.3 9.9 75 3-77 55-135 (156)
100 3ex7_B RNA-binding protein 8A; 99.6 3.6E-15 1.2E-19 118.8 8.9 76 3-78 22-101 (126)
101 1whx_A Hypothetical protein ri 99.6 2.8E-15 9.5E-20 118.6 8.2 73 3-78 10-83 (111)
102 1sjq_A Polypyrimidine tract-bi 99.6 3.6E-15 1.2E-19 119.6 8.7 73 3-78 16-91 (105)
103 1nu4_A U1A RNA binding domain; 99.6 2.3E-15 7.8E-20 114.4 7.2 75 3-77 8-87 (97)
104 2e44_A Insulin-like growth fac 99.6 3.9E-15 1.3E-19 113.1 8.4 75 3-78 15-91 (96)
105 2kn4_A Immunoglobulin G-bindin 99.6 4.8E-15 1.6E-19 122.1 9.6 77 3-79 70-150 (158)
106 2dhg_A TRNA selenocysteine ass 99.6 5E-15 1.7E-19 114.0 9.1 76 3-78 9-89 (104)
107 1x4d_A Matrin 3; structural ge 99.6 3.6E-15 1.2E-19 118.4 8.5 75 3-80 15-93 (102)
108 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.9E-15 1.7E-19 119.0 9.3 74 3-76 63-140 (140)
109 2jvo_A Nucleolar protein 3; nu 99.6 8.5E-15 2.9E-19 115.5 10.0 71 2-77 30-101 (108)
110 3md3_A Nuclear and cytoplasmic 99.6 9E-15 3.1E-19 118.2 10.3 76 4-79 1-79 (166)
111 2xnq_A Nuclear polyadenylated 99.6 1.2E-14 4.2E-19 112.2 10.5 70 3-77 22-93 (97)
112 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.1E-14 3.8E-19 120.3 10.9 78 3-80 39-120 (156)
113 2kxn_B Transformer-2 protein h 99.6 5.5E-15 1.9E-19 120.4 8.6 75 3-77 46-124 (129)
114 2dis_A Unnamed protein product 99.6 9.4E-15 3.2E-19 113.4 9.5 78 2-79 7-92 (109)
115 2cq1_A PTB-like protein L; RRM 99.6 1.4E-14 4.9E-19 114.2 10.6 73 3-78 15-90 (101)
116 2e5j_A Methenyltetrahydrofolat 99.6 7.6E-15 2.6E-19 112.4 8.7 73 3-77 19-92 (97)
117 2ad9_A Polypyrimidine tract-bi 99.6 1.2E-14 4.1E-19 118.7 10.3 73 3-78 31-106 (119)
118 2dgu_A Heterogeneous nuclear r 99.6 1.1E-14 3.9E-19 112.5 9.6 71 3-78 11-82 (103)
119 2cpd_A Apobec-1 stimulating pr 99.6 2.8E-14 9.4E-19 109.4 11.6 71 3-78 15-88 (99)
120 1wex_A Hypothetical protein (r 99.6 1.5E-14 5.1E-19 114.5 10.3 73 3-78 15-90 (104)
121 1wf1_A RNA-binding protein RAL 99.6 1.3E-14 4.4E-19 113.5 9.8 71 3-78 27-99 (110)
122 2i2y_A Fusion protein consists 99.6 6.3E-15 2.2E-19 121.1 8.3 73 3-77 73-146 (150)
123 2dha_A FLJ20171 protein; RRM d 99.6 2.8E-15 9.4E-20 122.5 6.0 74 3-76 23-102 (123)
124 2kvi_A Nuclear polyadenylated 99.6 7.7E-15 2.6E-19 112.3 8.1 71 3-78 10-82 (96)
125 2fc9_A NCL protein; structure 99.6 1.6E-14 5.5E-19 110.9 9.8 73 3-78 15-90 (101)
126 1fxl_A Paraneoplastic encephal 99.6 2.8E-14 9.6E-19 115.4 11.8 76 2-77 1-80 (167)
127 3beg_B Splicing factor, argini 99.6 5.2E-15 1.8E-19 117.6 7.2 71 3-77 16-92 (115)
128 1fjc_A Nucleolin RBD2, protein 99.6 6.7E-15 2.3E-19 111.8 7.3 74 3-78 16-90 (96)
129 2a3j_A U1 small nuclear ribonu 99.6 1E-14 3.5E-19 119.5 8.9 75 3-77 29-108 (127)
130 3r27_A HnRNP L, heterogeneous 99.6 1.7E-14 5.7E-19 114.8 9.8 72 3-77 21-95 (100)
131 2xs2_A Deleted in azoospermia- 99.5 8.2E-15 2.8E-19 112.7 7.5 74 3-77 9-84 (102)
132 2lea_A Serine/arginine-rich sp 99.5 8.3E-15 2.8E-19 120.0 7.8 77 3-79 47-127 (135)
133 2hgm_A HNRPF protein, heteroge 99.5 7.9E-15 2.7E-19 120.6 7.6 73 3-76 42-118 (126)
134 1fj7_A Nucleolin RBD1, protein 99.5 3.5E-15 1.2E-19 114.6 5.0 75 3-78 17-94 (101)
135 2hgn_A Heterogeneous nuclear r 99.5 2.8E-15 9.7E-20 124.9 4.8 74 3-77 46-121 (139)
136 1x5o_A RNA binding motif, sing 99.5 3E-14 1E-18 111.6 10.1 75 3-77 25-110 (114)
137 2cqh_A IGF-II mRNA-binding pro 99.5 2.4E-14 8.3E-19 108.3 9.2 72 3-78 8-82 (93)
138 1b7f_A Protein (SXL-lethal pro 99.5 3.8E-14 1.3E-18 115.3 10.9 77 2-78 2-82 (168)
139 2wbr_A GW182, gawky, LD47780P; 99.5 1.8E-14 6E-19 113.1 8.4 70 4-76 8-78 (89)
140 2cpx_A Hypothetical protein FL 99.5 2.9E-14 9.9E-19 111.6 9.7 75 3-78 25-104 (115)
141 1rk8_A CG8781-PA, CG8781-PA pr 99.5 2.5E-14 8.5E-19 119.9 9.8 75 3-77 72-150 (165)
142 1wg1_A KIAA1579 protein, homol 99.5 3.5E-14 1.2E-18 107.0 9.6 72 3-78 5-77 (88)
143 2voo_A Lupus LA protein; RNA-b 99.5 2.9E-14 1E-18 123.5 10.5 78 3-80 109-188 (193)
144 3d2w_A TAR DNA-binding protein 99.5 4.5E-14 1.5E-18 107.7 9.7 70 3-77 11-82 (89)
145 1l3k_A Heterogeneous nuclear r 99.5 4.1E-14 1.4E-18 118.1 10.3 77 3-79 13-92 (196)
146 1qm9_A Polypyrimidine tract-bi 99.5 1.7E-14 5.7E-19 121.7 7.7 76 1-78 1-78 (198)
147 3q2s_C Cleavage and polyadenyl 99.5 2.6E-14 9E-19 127.0 9.2 75 3-77 68-148 (229)
148 2qfj_A FBP-interacting repress 99.5 7.4E-14 2.5E-18 118.2 11.4 76 3-78 125-204 (216)
149 4f02_A Polyadenylate-binding p 99.5 5.5E-14 1.9E-18 121.5 10.7 75 3-77 15-93 (213)
150 3egn_A RNA-binding protein 40; 99.5 3.2E-14 1.1E-18 116.0 8.7 76 3-78 45-129 (143)
151 2m2b_A RNA-binding protein 10; 99.5 6.9E-15 2.4E-19 119.0 4.5 75 3-78 23-107 (131)
152 1wf0_A TDP-43, TAR DNA-binding 99.5 4E-14 1.4E-18 106.3 8.4 73 2-77 4-76 (88)
153 2fc8_A NCL protein; structure 99.5 8.7E-14 3E-18 106.7 10.0 73 3-78 15-91 (102)
154 4f02_A Polyadenylate-binding p 99.5 5.5E-14 1.9E-18 121.4 9.6 75 3-77 103-179 (213)
155 3md3_A Nuclear and cytoplasmic 99.5 9.2E-14 3.2E-18 112.2 10.2 75 3-77 87-165 (166)
156 1x4f_A Matrin 3; structural ge 99.5 2.5E-14 8.5E-19 115.7 6.8 74 3-79 25-102 (112)
157 1l3k_A Heterogeneous nuclear r 99.5 9.7E-14 3.3E-18 115.8 10.6 75 3-77 104-181 (196)
158 1x5p_A Negative elongation fac 99.5 1.9E-13 6.4E-18 104.6 11.3 71 3-78 15-86 (97)
159 2cjk_A Nuclear polyadenylated 99.5 4.1E-14 1.4E-18 115.2 7.6 75 3-77 87-164 (167)
160 2g4b_A Splicing factor U2AF 65 99.5 9.2E-14 3.1E-18 113.7 9.5 74 3-76 94-171 (172)
161 2qfj_A FBP-interacting repress 99.5 9.2E-14 3.1E-18 117.6 9.6 75 3-77 28-106 (216)
162 2dnl_A Cytoplasmic polyadenyla 99.5 1E-13 3.5E-18 109.5 9.1 73 3-76 8-98 (114)
163 3tyt_A Heterogeneous nuclear r 99.5 1.2E-13 4E-18 120.5 10.0 74 2-77 3-78 (205)
164 2ghp_A U4/U6 snRNA-associated 99.5 1.6E-13 5.3E-18 122.6 10.3 77 3-79 41-118 (292)
165 2f3j_A RNA and export factor b 99.5 7.4E-14 2.5E-18 119.6 7.8 76 3-78 88-166 (177)
166 2g4b_A Splicing factor U2AF 65 99.5 2.2E-13 7.6E-18 111.4 9.9 76 3-81 4-90 (172)
167 2lcw_A RNA-binding protein FUS 99.2 5.8E-15 2E-19 116.5 0.0 75 3-77 7-93 (116)
168 3nmr_A Cugbp ELAV-like family 99.4 2.8E-13 9.4E-18 110.6 9.6 74 3-76 95-174 (175)
169 3nmr_A Cugbp ELAV-like family 99.4 2E-13 6.9E-18 111.4 8.6 75 3-77 3-86 (175)
170 2cjk_A Nuclear polyadenylated 99.4 2.2E-13 7.4E-18 110.9 8.3 74 3-77 3-79 (167)
171 2yh0_A Splicing factor U2AF 65 99.4 3.4E-13 1.2E-17 112.6 9.7 75 3-77 114-192 (198)
172 2yh0_A Splicing factor U2AF 65 99.4 3.8E-13 1.3E-17 112.4 9.9 77 3-82 4-91 (198)
173 1b7f_A Protein (SXL-lethal pro 99.4 4.5E-13 1.5E-17 108.9 9.7 74 3-76 89-168 (168)
174 1fje_B Nucleolin RBD12, protei 99.4 3.7E-13 1.3E-17 110.8 9.2 73 3-77 99-172 (175)
175 2cq2_A Hypothetical protein LO 99.4 1.8E-13 6.1E-18 111.2 6.9 74 3-79 25-106 (114)
176 3pgw_A U1-A; protein-RNA compl 99.4 4.3E-13 1.5E-17 119.1 9.9 76 3-78 9-89 (282)
177 2adc_A Polypyrimidine tract-bi 99.4 3.2E-13 1.1E-17 117.8 8.6 74 3-78 34-109 (229)
178 1sjr_A Polypyrimidine tract-bi 99.4 4.4E-13 1.5E-17 115.4 9.1 74 4-78 47-123 (164)
179 3zzy_A Polypyrimidine tract-bi 99.4 8.9E-13 3E-17 109.4 10.6 71 5-77 30-104 (130)
180 2j8a_A Histone-lysine N-methyl 99.4 4.3E-13 1.5E-17 112.5 8.6 75 1-76 1-93 (136)
181 2e5i_A Heterogeneous nuclear r 99.4 9.5E-13 3.3E-17 108.0 10.6 70 5-77 27-100 (124)
182 3pgw_S U1-70K; protein-RNA com 99.4 4.2E-13 1.4E-17 130.0 9.7 75 4-78 103-181 (437)
183 1fxl_A Paraneoplastic encephal 99.4 9.9E-13 3.4E-17 106.2 9.9 73 3-75 88-166 (167)
184 2bz2_A Negative elongation fac 99.4 1.5E-12 5E-17 105.0 9.4 71 3-78 39-110 (121)
185 3sde_A Paraspeckle component 1 99.4 1.2E-12 4.2E-17 116.4 9.7 72 3-77 22-94 (261)
186 2ghp_A U4/U6 snRNA-associated 99.4 1.1E-12 3.8E-17 117.0 9.3 75 3-77 210-289 (292)
187 3pgw_A U1-A; protein-RNA compl 99.4 1.4E-12 4.9E-17 115.7 9.9 72 3-76 207-280 (282)
188 2pe8_A Splicing factor 45; RRM 99.4 3.8E-12 1.3E-16 100.8 11.0 75 3-77 8-92 (105)
189 2diu_A KIAA0430 protein; struc 99.4 2.3E-12 7.8E-17 102.4 9.3 69 4-79 9-84 (96)
190 1fje_B Nucleolin RBD12, protei 99.4 3.6E-13 1.2E-17 110.9 4.7 76 3-78 13-90 (175)
191 2dit_A HIV TAT specific factor 99.4 4.3E-12 1.5E-16 100.0 10.3 74 3-77 15-100 (112)
192 3smz_A Protein raver-1, ribonu 99.3 4.4E-12 1.5E-16 112.7 10.7 75 3-77 184-262 (284)
193 1qm9_A Polypyrimidine tract-bi 99.3 2.3E-12 7.9E-17 108.5 7.2 73 3-77 120-195 (198)
194 3u1l_A PRE-mRNA-splicing facto 99.3 3.2E-12 1.1E-16 115.8 8.3 73 3-78 134-228 (240)
195 3smz_A Protein raver-1, ribonu 99.3 8.6E-12 3E-16 110.8 10.9 76 3-78 95-174 (284)
196 2adc_A Polypyrimidine tract-bi 99.3 6.6E-12 2.3E-16 109.5 9.5 73 3-77 151-226 (229)
197 3tyt_A Heterogeneous nuclear r 99.3 3.4E-12 1.2E-16 111.2 7.0 67 3-69 123-193 (205)
198 3sde_A Paraspeckle component 1 99.3 1.2E-11 4.2E-16 110.0 8.7 77 3-79 96-179 (261)
199 1jmt_A Splicing factor U2AF 35 99.2 1.1E-11 3.6E-16 97.8 3.8 69 9-77 21-104 (104)
200 3v4m_A Splicing factor U2AF 65 99.2 7.2E-11 2.5E-15 93.3 8.2 74 3-76 5-94 (105)
201 3ue2_A Poly(U)-binding-splicin 99.1 2.5E-10 8.5E-15 92.5 9.0 75 3-77 20-107 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.4E-09 4.9E-14 85.7 11.4 71 4-77 11-88 (100)
203 1owx_A Lupus LA protein, SS-B, 99.0 7.5E-10 2.6E-14 91.0 8.9 72 2-76 17-93 (121)
204 3s6e_A RNA-binding protein 39; 99.0 1.1E-09 3.7E-14 88.3 9.1 75 2-77 6-91 (114)
205 3tht_A Alkylated DNA repair pr 99.0 5.4E-10 1.8E-14 106.0 8.4 71 3-76 18-96 (345)
206 2dnr_A Synaptojanin-1; RRM dom 98.9 7.1E-09 2.4E-13 81.6 8.2 70 3-77 7-84 (91)
207 1ufw_A Synaptojanin 2; RNP dom 98.7 2.2E-08 7.4E-13 79.4 6.1 68 4-76 16-92 (95)
208 3dxb_A Thioredoxin N-terminall 98.4 7.5E-07 2.6E-11 77.0 7.7 63 15-77 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.3 2.2E-06 7.5E-11 69.9 8.1 71 3-76 21-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.1 2.3E-05 7.7E-10 63.0 10.9 71 3-78 8-83 (104)
211 1wwh_A Nucleoporin 35, nucleop 97.8 0.00014 4.7E-09 59.7 9.6 71 3-77 24-95 (119)
212 3p3d_A Nucleoporin 53; structu 97.0 0.00071 2.4E-08 56.4 5.1 73 4-77 8-97 (132)
213 1wey_A Calcipressin 1; structu 96.9 0.0048 1.7E-07 49.4 8.8 71 4-77 6-82 (104)
214 1uw4_A UPF3X; nonsense mediate 96.8 0.0056 1.9E-07 47.7 8.5 66 4-69 2-73 (91)
215 3pq1_A Poly(A) RNA polymerase; 96.2 0.0028 9.4E-08 62.4 3.7 61 4-67 54-114 (464)
216 1whv_A Poly(A)-specific ribonu 94.4 0.069 2.4E-06 42.4 5.8 50 6-60 18-67 (100)
217 3ctr_A Poly(A)-specific ribonu 94.4 0.076 2.6E-06 42.3 5.9 50 6-60 8-57 (101)
218 2l08_A Regulator of nonsense t 94.3 0.045 1.6E-06 43.2 4.5 66 4-69 10-81 (97)
219 2kn4_A Immunoglobulin G-bindin 84.0 0.85 2.9E-05 36.4 3.7 42 32-73 2-45 (158)
220 3d45_A Poly(A)-specific ribonu 81.8 3.1 0.00011 40.8 7.4 52 5-62 442-494 (507)
221 2i2y_A Fusion protein consists 81.7 1 3.5E-05 35.8 3.3 35 42-77 13-49 (150)
222 4e8u_A Putative uncharacterize 68.8 11 0.00036 32.5 6.4 58 5-62 14-83 (172)
223 3j21_T 50S ribosomal protein L 47.4 34 0.0012 26.0 5.3 52 5-56 24-77 (86)
224 3ezj_A General secretion pathw 41.3 6 0.0002 34.5 0.2 69 11-79 9-87 (241)
225 1vq8_S 50S ribosomal protein L 34.7 67 0.0023 24.2 5.2 50 5-54 23-74 (85)
226 3fry_A Probable copper-exporti 32.4 1.1E+02 0.0037 20.5 5.6 61 1-65 4-64 (73)
227 1cqt_I POU domain, class 2, as 25.3 26 0.0009 23.5 1.2 18 262-279 6-23 (44)
228 3u5e_X 60S ribosomal protein L 24.4 89 0.0031 25.9 4.6 55 5-59 80-137 (142)
229 4a17_R RPL23A, 60S ribosomal p 23.6 91 0.0031 26.1 4.5 55 5-59 88-145 (150)
230 2jz2_A SSL0352 protein; SH3-li 22.5 1E+02 0.0036 22.4 4.0 35 1-50 3-37 (66)
231 2g0c_A ATP-dependent RNA helic 22.4 98 0.0033 21.6 4.0 58 14-76 12-74 (76)
232 4ar0_A Type IV pilus biogenesi 21.8 52 0.0018 26.3 2.6 62 15-76 38-104 (128)
233 2zkr_s 60S ribosomal protein L 21.1 1.5E+02 0.005 25.0 5.3 54 5-58 94-150 (156)
234 3iz5_X 60S ribosomal protein L 20.3 96 0.0033 26.0 4.0 54 5-58 90-146 (152)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=128.49 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=69.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
+++|||+|||+.+|+++|+++|+.||+|.+|+|.++.. ..++|||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 67999999999999999999999999999999998753 3579999999999999999 599999999999999773
No 2
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.71 E-value=3.3e-17 Score=130.09 Aligned_cols=78 Identities=18% Similarity=0.281 Sum_probs=70.4
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCC-CcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 1 MSIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEW-TQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 1 Ms~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~-~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
|...+|||+|||+.+|+++|+++|+.||.|.+|+|+.+.+. .+||||+|+++++|..|+ .|||..|+|+.|.|..+..
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 34578999999999999999999999999999999988643 589999999999999999 5999999999999998753
No 3
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=1.5e-16 Score=118.91 Aligned_cols=76 Identities=21% Similarity=0.341 Sum_probs=70.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--C-CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--E-WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~-~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.+..+. + ..++|||+|.++++|..|+.|||..|.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 5899999999999999999999999999999999875 2 36899999999999999999999999999999998853
No 4
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=118.80 Aligned_cols=77 Identities=25% Similarity=0.366 Sum_probs=71.1
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC----CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEe
Q 023572 1 MSIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE----WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISL 75 (280)
Q Consensus 1 Ms~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~----~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~ 75 (280)
|..++|||+|||+.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+. |||..|+|+.|.|..
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 4578999999999999999999999999999999988763 46899999999999999996 999999999999998
Q ss_pred CC
Q 023572 76 AP 77 (280)
Q Consensus 76 a~ 77 (280)
+.
T Consensus 82 a~ 83 (88)
T 4a8x_A 82 VL 83 (88)
T ss_dssp EC
T ss_pred CC
Confidence 73
No 5
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=120.13 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=71.3
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 2 SIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 2 s~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ...++|||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 35799999999999999999999999999999999875 23589999999999999999 799999999999999885
Q ss_pred CC
Q 023572 78 DY 79 (280)
Q Consensus 78 ~~ 79 (280)
.-
T Consensus 87 ~~ 88 (99)
T 1whw_A 87 IK 88 (99)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 6
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.2e-16 Score=119.61 Aligned_cols=76 Identities=22% Similarity=0.339 Sum_probs=70.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC-CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE-WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~-~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|+|..+.+ ..++|||+|.++++|..|+. |||..|+|+.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 47999999999999999999999999999999998864 46899999999999999995 999999999999998854
No 7
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.8e-17 Score=128.77 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=70.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|++||+.||+|.+|+|+.+.. ..|+|||+|+++++|..|+.+||..|+|+.|.|....+
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 58999999999999999999999999999999998753 46899999999999999999999999999999987644
No 8
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.68 E-value=2.2e-16 Score=118.02 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=68.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a 76 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.++.+.. ..++|||+|.++++|..|+.++|..|+|+.|.|..+
T Consensus 11 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 11 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 57999999999999999999999999999999998852 357999999999999999999999999999999864
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4e-16 Score=119.46 Aligned_cols=76 Identities=24% Similarity=0.299 Sum_probs=70.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. ..++|||+|.++++|..|+.|||..|+|+.|.|..+..
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~ 88 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEP 88 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 47999999999999999999999999999999998752 46899999999999999999999999999999998853
No 10
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.67 E-value=2.9e-16 Score=124.88 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=69.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+||++.+||++|+++|+.||+|.+|+|+.+.. ..+||||+|+++++|..|+ .|||..|.|+.|.|..+.
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 57999999999999999999999999999999998863 3589999999999999999 599999999999999873
No 11
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=2.3e-16 Score=116.99 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=68.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
.++|||+|||+.+++++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+ .|||..|+|+.|.|..+
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 57999999999999999999999999999999988742 3689999999999999999 69999999999999876
No 12
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.2e-16 Score=120.99 Aligned_cols=77 Identities=21% Similarity=0.262 Sum_probs=71.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~~ 79 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|+|..+....++|||+|+++++|..|+ .|||..|.|+.|.|..+...
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 479999999999999999999999999999999877666789999999999999999 79999999999999987543
No 13
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=118.68 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=69.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+++++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|..|+. |||..|.|+.|.|..+.
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 47999999999999999999999999999999998763 35799999999999999996 99999999999998874
No 14
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=4.6e-16 Score=114.85 Aligned_cols=75 Identities=13% Similarity=0.171 Sum_probs=69.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
+++|||+|||+.+|+++|+++|+.||.|.++.+..+.. ..++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 36899999999999999999999999999999998842 35899999999999999995 99999999999999875
No 15
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=120.47 Aligned_cols=76 Identities=26% Similarity=0.344 Sum_probs=70.8
Q ss_pred cCeEEEeCCCCCCCHHHHH----HHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIK----EFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLk----eFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
+++|||+|||+.+++++|+ ++|+.||+|.+|+|..+....++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 4689999999999999999 999999999999999886557899999999999999995 99999999999999885
Q ss_pred C
Q 023572 78 D 78 (280)
Q Consensus 78 ~ 78 (280)
.
T Consensus 89 ~ 89 (96)
T 2dgx_A 89 G 89 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 16
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.66 E-value=1.3e-16 Score=116.17 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=66.8
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 76 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a 76 (280)
+|||+|||+.+|+++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|+.|+.|||..|+|+.|.|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999998752 358999999999999999999999999999999764
No 17
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=116.47 Aligned_cols=75 Identities=21% Similarity=0.189 Sum_probs=69.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--C-CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--E-WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~-~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.+..+. + ..++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4799999999999999999999999999999999874 2 35799999999999999995 99999999999998764
No 18
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.66 E-value=7.2e-17 Score=122.33 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=65.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCC--ceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSG--DIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG--~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.+|||+||++.+|+++|+++|+.|| .|.+|++..+.. ..|+|||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999999999999999999 999999998852 3589999999999999999 699999999999999875
Q ss_pred C
Q 023572 78 D 78 (280)
Q Consensus 78 ~ 78 (280)
.
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 19
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=8.2e-16 Score=116.42 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=70.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 58999999999999999999999999999999998752 35799999999999999996 999999999999998854
No 20
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.4e-16 Score=118.77 Aligned_cols=76 Identities=25% Similarity=0.336 Sum_probs=70.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC-CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE-WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~-~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.|..+.+ ..++|||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 47999999999999999999999999999999998864 46899999999999999996 999999999999998854
No 21
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=7.8e-16 Score=118.64 Aligned_cols=78 Identities=19% Similarity=0.308 Sum_probs=71.1
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCC-CcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCCC
Q 023572 2 SIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEW-TQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 2 s~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~-~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~~ 79 (280)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+.+. .++|||+|.++++|..|+. |||..|.|+.|.|..+...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 93 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence 3579999999999999999999999999999999987433 5799999999999999995 9999999999999988543
No 22
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=123.03 Aligned_cols=75 Identities=15% Similarity=0.233 Sum_probs=67.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCc--eeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCC----eecCeeEEE
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGD--IEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGA----TIVDLSVSI 73 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~--I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~----~L~gr~I~V 73 (280)
.||||+|||+.+|+++|+++|+.||. |.+|++++++. .+|||||+|.++++|..|+ .|||. .|+||.|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 49999999999999999999999995 67999998862 3689999999999999999 59998 499999999
Q ss_pred EeCCC
Q 023572 74 SLAPD 78 (280)
Q Consensus 74 ~~a~~ 78 (280)
..+.+
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 98754
No 23
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=8.5e-16 Score=117.19 Aligned_cols=78 Identities=19% Similarity=0.318 Sum_probs=70.7
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC------CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEE
Q 023572 2 SIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE------WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSIS 74 (280)
Q Consensus 2 s~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~------~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~ 74 (280)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|..|+. |||..|+|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 357999999999999999999999999999999997643 24799999999999999996 99999999999999
Q ss_pred eCCCC
Q 023572 75 LAPDY 79 (280)
Q Consensus 75 ~a~~~ 79 (280)
.+...
T Consensus 84 ~a~~~ 88 (98)
T 2cpf_A 84 ISERA 88 (98)
T ss_dssp CSSCS
T ss_pred EccCC
Confidence 88543
No 24
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=4.9e-16 Score=117.03 Aligned_cols=77 Identities=19% Similarity=0.287 Sum_probs=70.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC-CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE-WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~-~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~~ 79 (280)
.++|||+|||+.+|+++|+++|+.||+|.+|++..+.+ ..++|||+|.++++|..|+. |||..|+|+.|.|..+...
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 57999999999999999999999999999999998654 35899999999999999995 9999999999999988544
No 25
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.1e-16 Score=116.97 Aligned_cols=77 Identities=17% Similarity=0.272 Sum_probs=70.5
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHcccCCceeEE-EEeeCC--C-CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeC
Q 023572 2 SIKTVKVSNVSLGATERGIKEFFSFSGDIEYV-EMKSDN--E-WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 76 (280)
Q Consensus 2 s~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I-~l~~d~--~-~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a 76 (280)
..++|||+|||+.+|+++|+++|+.||.|.+| +|..+. + ..++|||+|+++++|..|+. |||..|.|+.|.|..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35899999999999999999999999999999 998874 2 36899999999999999996 9999999999999988
Q ss_pred CC
Q 023572 77 PD 78 (280)
Q Consensus 77 ~~ 78 (280)
..
T Consensus 84 ~~ 85 (96)
T 1x5t_A 84 FK 85 (96)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 26
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.2e-16 Score=116.52 Aligned_cols=74 Identities=23% Similarity=0.354 Sum_probs=68.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
.++|||+|||+.+++++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 47899999999999999999999999999999998753 3689999999999999999 69999999999999875
No 27
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.5e-16 Score=118.15 Aligned_cols=76 Identities=17% Similarity=0.339 Sum_probs=70.1
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 2 SIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 2 s~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
..++|||+|||+.+|+++|+++|+.||.|.+|.|..+.. ..++|||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 357999999999999999999999999999999998862 2489999999999999999 699999999999999874
No 28
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=1.3e-15 Score=117.66 Aligned_cols=76 Identities=22% Similarity=0.365 Sum_probs=69.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~~ 79 (280)
.++|||+|||+.+|+++|++||+.|| |.+|+|+.+.. ..++|||+|+++++|..|+.|||..|.|+.|.|..+...
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGR 93 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCC
Confidence 47899999999999999999999998 99999998863 357999999999999999999999999999999988543
No 29
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=8.5e-16 Score=117.24 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=70.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+++++|+++|+.||.|.+|++..+.. ..++|||+|.+.++|..|+ .|||..|+|+.|.|..+..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 58999999999999999999999999999999998752 3689999999999999999 6999999999999998854
No 30
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=6.3e-16 Score=121.34 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=70.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.+..++...++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 5899999999999999999999999999999999887678999999999999999996 99999999999999873
No 31
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.2e-16 Score=118.82 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=70.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.|..+.. ..++|||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARY 92 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence 47999999999999999999999999999999998752 36899999999999999996 999999999999999864
Q ss_pred C
Q 023572 79 Y 79 (280)
Q Consensus 79 ~ 79 (280)
.
T Consensus 93 ~ 93 (103)
T 2dnm_A 93 G 93 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 32
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.64 E-value=1.9e-15 Score=118.59 Aligned_cols=79 Identities=22% Similarity=0.176 Sum_probs=71.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--C-CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--E-WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~-~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+||++.+|+++|+++|+.||.|.+|+|..+. + ..++|||+|.++++|..|+ .|||..|+|+.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (115)
T 2dgo_A 15 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 94 (115)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 4789999999999999999999999999999999874 2 2579999999999999999 5999999999999999865
Q ss_pred CCC
Q 023572 79 YQL 81 (280)
Q Consensus 79 ~~~ 81 (280)
...
T Consensus 95 ~~~ 97 (115)
T 2dgo_A 95 KPP 97 (115)
T ss_dssp CCC
T ss_pred CCC
Confidence 433
No 33
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=9e-16 Score=116.92 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=65.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~~ 79 (280)
.++|||+|||+.+|+++|+++|+.||.|.+| +.+....++|||+|.+++++..|+.|||..|+|+.|.|..+...
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcC
Confidence 3689999999999999999999999999998 33332222999999999999999999999999999999977543
No 34
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.1e-16 Score=116.54 Aligned_cols=75 Identities=27% Similarity=0.306 Sum_probs=69.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 47899999999999999999999999999999998753 25799999999999999995 99999999999999874
No 35
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.2e-16 Score=118.39 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=70.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ...++|||+|.++++|..|+ .|||..|+|+.|.|..+..
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP 91 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence 4789999999999999999999999999999998874 24689999999999999999 6999999999999998854
No 36
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=118.01 Aligned_cols=76 Identities=24% Similarity=0.362 Sum_probs=69.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 94 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCC
Confidence 47899999999999999999999999999999998752 35799999999999999995 999999999999998753
No 37
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.6e-16 Score=119.12 Aligned_cols=75 Identities=23% Similarity=0.346 Sum_probs=69.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC----CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE----WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~----~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|++||+.|| |.+|.|+.+.. ..++|||+|.++++|..||.|||..|.|+.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccC
Confidence 47899999999999999999999999 99999998853 36899999999999999999999999999999998853
No 38
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=1e-15 Score=120.41 Aligned_cols=76 Identities=12% Similarity=0.192 Sum_probs=70.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|+|..+.. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+..
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence 47899999999999999999999999999999998752 2479999999999999999 7999999999999998753
No 39
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=4.2e-16 Score=124.61 Aligned_cols=74 Identities=12% Similarity=0.107 Sum_probs=68.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCc---eeEEEEeeCCC--CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGD---IEYVEMKSDNE--WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~---I~~I~l~~d~~--~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a 76 (280)
.++|||+|||+.+|+++|++||+.||. |.+|+|+.+.. .+++|||+|.++++|..||.|||..|+|+.|.|..+
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 95 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKS 95 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 478999999999999999999999999 99999998753 358999999999999999999999999999999876
No 40
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.2e-16 Score=121.45 Aligned_cols=74 Identities=26% Similarity=0.433 Sum_probs=69.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a 76 (280)
.++|||+||++.+|+++|++||+.||.|.+|+|..+.. ..++|||+|.+.++|..|+.|||..|+|+.|.|..+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 37999999999999999999999999999999998763 358999999999999999999999999999999876
No 41
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.4e-16 Score=123.15 Aligned_cols=73 Identities=21% Similarity=0.225 Sum_probs=67.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
++|||+|||+.+|+++|++||+.| .|.+|.|+.+.. .+|+|||+|.++++|..||.|||..|+||.|.|.++.
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 589999999999999999999999 899999998752 4689999999999999999999999999999998874
No 42
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.4e-16 Score=118.67 Aligned_cols=76 Identities=22% Similarity=0.373 Sum_probs=70.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+..
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 91 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 91 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 47999999999999999999999999999999998752 3579999999999999999 7999999999999998743
No 43
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.2e-16 Score=119.17 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=69.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
+++|||+|||+.+|+++|+++|+.||+|.+|.|..+.. ..++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 57899999999999999999999999999999998853 35899999999999999995 99999999999999874
No 44
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.8e-16 Score=120.23 Aligned_cols=74 Identities=24% Similarity=0.189 Sum_probs=67.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+||++|++||+.|| |.+|+|+.+.. .+++|||+|+++++|..||.+|+..|+|+.|.|..+.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 15 GHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 57999999999999999999999999 55999998862 3579999999999999999999999999999998764
No 45
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=6.3e-16 Score=119.55 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=70.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~~ 79 (280)
.++|||+|||+.+|+++|++||+.||+|.+|.|..+.. ..++|||+|+++++|..||.+||..|+|+.|.|..+...
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~ 95 (105)
T 2dh8_A 16 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPR 95 (105)
T ss_dssp SSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCC
Confidence 47999999999999999999999999999999998852 357999999999999999977999999999999887543
No 46
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.1e-16 Score=119.84 Aligned_cols=75 Identities=21% Similarity=0.197 Sum_probs=68.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeE-EEEeeCC--CCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEY-VEMKSDN--EWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~-I~l~~d~--~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|++||+.||.|.+ |.|+.+. ...++|||+|.++++|..||.+||..|+|+.|.|..+.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 478999999999999999999999999998 9888774 23689999999999999999889999999999998764
No 47
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=1e-15 Score=121.65 Aligned_cols=76 Identities=21% Similarity=0.356 Sum_probs=70.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--C-CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--E-WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~-~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+||++.+|+++|++||+.||.|.+|.+..+. + ..++|||+|.+.+++..|+.|||..|+|+.|.|..+..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 4799999999999999999999999999999999874 2 35899999999999999999999999999999998753
No 48
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=120.08 Aligned_cols=75 Identities=23% Similarity=0.344 Sum_probs=70.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC-CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE-WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~-~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
.++|||+||++.+|+++|+++|+.||+|.+|++..+.+ ..++|||+|.+.++|..|+. |||..|+|+.|.|..+.
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 57999999999999999999999999999999998764 46899999999999999995 99999999999999874
No 49
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.63 E-value=1.2e-15 Score=118.09 Aligned_cols=75 Identities=23% Similarity=0.291 Sum_probs=69.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC-C-CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN-E-WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~-~-~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.|..+. + ..++|||+|.++++|..|+. |||..|.|+.|.|..+.
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4789999999999999999999999999999999886 2 25799999999999999996 99999999999998764
No 50
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.63 E-value=4.1e-16 Score=119.43 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=66.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCC-ceeEEEEeeCC---CCCcEEEEEecChHHHHHHHh-h-cCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSG-DIEYVEMKSDN---EWTQIAYVTFKDMQGAETAVL-L-SGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG-~I~~I~l~~d~---~~~~~A~VtFed~~aA~tALl-L-nG~~L~gr~I~V~~a~ 77 (280)
++|||+|||+.+||++|+++|+.|| +|.+|+|+++. ..+|||||+|.++++|..|+. | |+..|+|+.|.|..+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 89999999875 246899999999999999994 5 5678999999998763
No 51
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=118.93 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=68.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecC-----eeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVD-----LSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~g-----r~I~V~~a 76 (280)
.++|||+|||+.+|+++|++||+.||+|.+|.|..+ ++|||+|.++++|..|+. |||..|.| +.|.|..+
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 478999999999999999999999999999999876 899999999999999995 99999999 99999988
Q ss_pred CC
Q 023572 77 PD 78 (280)
Q Consensus 77 ~~ 78 (280)
..
T Consensus 91 ~~ 92 (108)
T 1x4c_A 91 GP 92 (108)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 52
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.2e-15 Score=116.40 Aligned_cols=76 Identities=22% Similarity=0.367 Sum_probs=69.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeC-C--C-CCcEEEEEecChHHHHHHH-hh-cCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSD-N--E-WTQIAYVTFKDMQGAETAV-LL-SGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d-~--~-~~~~A~VtFed~~aA~tAL-lL-nG~~L~gr~I~V~~a 76 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|+|..+ . + ..++|||+|.++++|..|+ .| ||..|.|+.|.|..+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a 94 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA 94 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEEC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeC
Confidence 578999999999999999999999999999999887 2 2 3689999999999999999 58 999999999999988
Q ss_pred CC
Q 023572 77 PD 78 (280)
Q Consensus 77 ~~ 78 (280)
..
T Consensus 95 ~~ 96 (107)
T 2cph_A 95 DS 96 (107)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 53
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3e-15 Score=117.06 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=69.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+||++.+|+++|++||+.||.|.+|+|..+.. ..++|||+|.+.++|..|+. |||..|+|+.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 47999999999999999999999999999999998763 25799999999999999996 999999999999998753
No 54
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.9e-15 Score=113.00 Aligned_cols=72 Identities=18% Similarity=0.318 Sum_probs=67.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~~ 79 (280)
.++|||+|||+.+|+++|+++|+.||+|.+|.+. .++|||+|.++++|..|+ .|||..|.|+.|.|..+...
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 8 MVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 4799999999999999999999999999999998 479999999999999999 69999999999999988543
No 55
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.7e-16 Score=121.80 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=69.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCce-eEEEEeeCC-C-CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDI-EYVEMKSDN-E-WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I-~~I~l~~d~-~-~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|++||+.||.| .+|.|+.+. + ..++|||+|.++++|..||.+||..|+|+.|.|..+.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 15 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 92 (114)
T ss_dssp CCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEEC
T ss_pred ccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECC
Confidence 4799999999999999999999999999 899999876 2 3689999999999999999889999999999999874
No 56
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.62 E-value=4.7e-16 Score=115.43 Aligned_cols=71 Identities=17% Similarity=0.149 Sum_probs=64.6
Q ss_pred cCeEEEeCCCCCC------CHHHHHHHcccCCceeEEEEeeCCC-CCcEEEEEecChHHHHHHHh-hcCCeecCe-eEEE
Q 023572 3 IKTVKVSNVSLGA------TERGIKEFFSFSGDIEYVEMKSDNE-WTQIAYVTFKDMQGAETAVL-LSGATIVDL-SVSI 73 (280)
Q Consensus 3 ~rTV~V~NIs~~t------TE~dLkeFFS~cG~I~~I~l~~d~~-~~~~A~VtFed~~aA~tALl-LnG~~L~gr-~I~V 73 (280)
+++|||+|||+.+ |+++|+++|+.||+|.+|.|.++.+ ..++|||+|.++++|..|+. |||..|+|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 7899999999999999999985544 36899999999999999995 999999999 8877
No 57
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.62 E-value=3.1e-16 Score=113.93 Aligned_cols=72 Identities=22% Similarity=0.332 Sum_probs=66.6
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 76 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a 76 (280)
+|||+|||+.+|+++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|..|+.++|..|+|+.|.|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999988752 368999999999999999999999999999999753
No 58
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=117.31 Aligned_cols=76 Identities=18% Similarity=0.213 Sum_probs=69.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.|..+.. ..++|||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 15 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 47999999999999999999999999999999998752 35799999999999999995 999999999999998743
No 59
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=120.41 Aligned_cols=75 Identities=21% Similarity=0.255 Sum_probs=68.9
Q ss_pred cCeEEEeCCCCCCCHHHHH---HHcccCCceeEEEEeeCCC------CCcEEEEEecChHHHHHHHh-hcCCeecCeeEE
Q 023572 3 IKTVKVSNVSLGATERGIK---EFFSFSGDIEYVEMKSDNE------WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVS 72 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLk---eFFS~cG~I~~I~l~~d~~------~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~ 72 (280)
.++|||+|||+.+++++|+ ++|+.||+|.+|.|..+.+ ..++|||+|+++++|..|+. |||..|+|+.|.
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 94 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK 94 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEE
Confidence 4789999999999999999 9999999999999988753 23799999999999999995 899999999999
Q ss_pred EEeCC
Q 023572 73 ISLAP 77 (280)
Q Consensus 73 V~~a~ 77 (280)
|..+.
T Consensus 95 V~~a~ 99 (111)
T 2cpi_A 95 ASLGT 99 (111)
T ss_dssp EESCC
T ss_pred EEecc
Confidence 99875
No 60
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.62 E-value=1.5e-15 Score=119.75 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=68.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a 76 (280)
.++|||+||++.+|+++|+++|+.||+|.+|+|..+. ...++|||+|.+.+++..|+. |||..|+|+.|+|..+
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 4789999999999999999999999999999999874 236899999999999999995 9999999999999865
No 61
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.62 E-value=3e-15 Score=115.51 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=69.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHH-hhcCCeecC---eeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAV-LLSGATIVD---LSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tAL-lLnG~~L~g---r~I~V~~a 76 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.|..+.. ..++|||+|.++++|..|+ .|||..|.| +.|.|..+
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a 94 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA 94 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEEC
Confidence 47999999999999999999999999999999998862 2589999999999999999 599999998 99999988
Q ss_pred CC
Q 023572 77 PD 78 (280)
Q Consensus 77 ~~ 78 (280)
..
T Consensus 95 ~~ 96 (105)
T 2dnh_A 95 DT 96 (105)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 62
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.62 E-value=6.4e-16 Score=119.86 Aligned_cols=75 Identities=13% Similarity=0.202 Sum_probs=69.5
Q ss_pred cCeEEEeCCCC------CCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecC-eeE
Q 023572 3 IKTVKVSNVSL------GATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVD-LSV 71 (280)
Q Consensus 3 ~rTV~V~NIs~------~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~g-r~I 71 (280)
.++|||+|||+ .+++++|+++|+.||+|.+|+|+.+.. ..++|||+|.++++|..|+ .|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 47999999999 999999999999999999999998863 3689999999999999999 599999999 999
Q ss_pred EEEeCC
Q 023572 72 SISLAP 77 (280)
Q Consensus 72 ~V~~a~ 77 (280)
.|..+.
T Consensus 86 ~V~~a~ 91 (100)
T 3ns6_A 86 FLYTMK 91 (100)
T ss_dssp EEEESH
T ss_pred EEEECc
Confidence 999773
No 63
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.62 E-value=2.5e-15 Score=119.84 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=70.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--CCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--EWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~~ 79 (280)
+++|||+||++.+++++|+++|+.||+|.+|+|..+. ...++|||+|.+.++|..|+. |||..|+|+.|.|..+...
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 4689999999999999999999999999999999875 235899999999999999996 9999999999999987543
No 64
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=115.81 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=69.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCcee-EEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCee----EEE
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIE-YVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLS----VSI 73 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~-~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~----I~V 73 (280)
.++|||+|||+.+|+++|+++|+.||+|. +|+|+.+.. ..++|||+|.++++|..|+. |||..|.|+. |.|
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v 88 (99)
T 2div_A 9 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKL 88 (99)
T ss_dssp SSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEE
Confidence 47999999999999999999999999999 999998852 35899999999999999996 9999999999 999
Q ss_pred EeCCC
Q 023572 74 SLAPD 78 (280)
Q Consensus 74 ~~a~~ 78 (280)
..+..
T Consensus 89 ~~a~~ 93 (99)
T 2div_A 89 NYATY 93 (99)
T ss_dssp EETTC
T ss_pred eecCC
Confidence 88753
No 65
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=113.50 Aligned_cols=72 Identities=21% Similarity=0.344 Sum_probs=67.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~~ 79 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|++.++ +|||+|.++++|..|+. |||..|+|+.|.|..+...
T Consensus 9 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 9 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-----YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-----CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 579999999999999999999999999999999843 99999999999999995 9999999999999988543
No 66
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=115.99 Aligned_cols=74 Identities=23% Similarity=0.353 Sum_probs=68.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeE--------EEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCee
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEY--------VEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLS 70 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~--------I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~ 70 (280)
.++|||+||++.+|+++|++||+.||.|.+ |++..+.. ..++|||+|.+.++|..|+ .|||..|.|+.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 92 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 92 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 479999999999999999999999999999 99998752 3589999999999999999 59999999999
Q ss_pred EEEEeC
Q 023572 71 VSISLA 76 (280)
Q Consensus 71 I~V~~a 76 (280)
|.|..+
T Consensus 93 l~V~~A 98 (99)
T 2la6_A 93 IKVSFA 98 (99)
T ss_dssp CEEEEC
T ss_pred EEEEec
Confidence 999876
No 67
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=1.9e-15 Score=117.68 Aligned_cols=75 Identities=23% Similarity=0.253 Sum_probs=69.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 57899999999999999999999999999999988752 36899999999999999995 99999999999999874
No 68
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.2e-15 Score=116.13 Aligned_cols=76 Identities=24% Similarity=0.342 Sum_probs=69.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhc------CCeecCeeEE
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLS------GATIVDLSVS 72 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLn------G~~L~gr~I~ 72 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|+|..+.. ..++|||+|.+.++|..|+ .|| |..|+|+.|.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~ 94 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLK 94 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEE
Confidence 47899999999999999999999999999999998752 4689999999999999999 599 9999999999
Q ss_pred EEeCCC
Q 023572 73 ISLAPD 78 (280)
Q Consensus 73 V~~a~~ 78 (280)
|..+..
T Consensus 95 v~~a~~ 100 (111)
T 1x4h_A 95 VDLAVT 100 (111)
T ss_dssp EECCCC
T ss_pred EEECCC
Confidence 998753
No 69
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=114.04 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=68.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC-C-CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN-E-WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~-~-~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|++||+.| .|.+|+|+.+. + ..++|||+|.+++++..|+.|||..|+|+.|.|..+.
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 5799999999999999999999999 99999999884 2 3589999999999999999999999999999999874
No 70
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3e-15 Score=116.87 Aligned_cols=73 Identities=22% Similarity=0.290 Sum_probs=68.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|+|..+ .++|||+|.++++|..|+ .|||..|.|+.|.|..+..
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 579999999999999999999999999999999976 679999999999999999 6999999999999998754
No 71
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=118.99 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=69.6
Q ss_pred cCeEEEeCCCCCC------CHHHHHHHcccCCceeEEEEeeCCC-CCcEEEEEecChHHHHHHHh-hcCCeecCe-eEEE
Q 023572 3 IKTVKVSNVSLGA------TERGIKEFFSFSGDIEYVEMKSDNE-WTQIAYVTFKDMQGAETAVL-LSGATIVDL-SVSI 73 (280)
Q Consensus 3 ~rTV~V~NIs~~t------TE~dLkeFFS~cG~I~~I~l~~d~~-~~~~A~VtFed~~aA~tALl-LnG~~L~gr-~I~V 73 (280)
.++|||+|||+.+ |+++|+++|+.||.|.+|.|.+..+ ..|+|||+|.++++|..|+. |||..|+|+ .|.|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V 94 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 94 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEE
Confidence 4799999999999 8899999999999999999985444 36899999999999999995 999999999 9999
Q ss_pred EeCCCC
Q 023572 74 SLAPDY 79 (280)
Q Consensus 74 ~~a~~~ 79 (280)
..+.+.
T Consensus 95 ~~a~~~ 100 (105)
T 2nlw_A 95 NLFTDF 100 (105)
T ss_dssp ECSCCC
T ss_pred EEcchH
Confidence 988654
No 72
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.61 E-value=3e-16 Score=118.02 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=67.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~~ 79 (280)
++|||+|||+.+++++|+++|+.||+|.+|.+..+. ...++|||+|.+++ |..|+ .|||..|+|+.|.|..+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 589999999999999999999999999999999875 23689999999999 99998 49999999999999988543
No 73
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=4.7e-16 Score=121.74 Aligned_cols=75 Identities=11% Similarity=0.066 Sum_probs=69.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCc---eeEEEEeeCCC--CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGD---IEYVEMKSDNE--WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~---I~~I~l~~d~~--~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|++||+.||. |.+|+|+.+.. .+|+|||+|.++++|..||.|||..|+|+.|.|..+.
T Consensus 11 ~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 90 (107)
T 2lmi_A 11 VFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEIN 90 (107)
T ss_dssp CCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECC
Confidence 478999999999999999999999998 99999998753 4689999999999999999999999999999998773
No 74
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.4e-15 Score=117.55 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=70.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|++||+.||.|.+|.|..+.. ..++|||+|.++++|..||.+||..|+|+.|.|..+..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 37899999999999999999999999999999998752 35899999999999999998899999999999998753
No 75
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.7e-15 Score=116.77 Aligned_cols=75 Identities=23% Similarity=0.274 Sum_probs=68.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|+|..+.. ..++|||+|.++++|..|+. ||+ .|.|+.|.|..+..
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYL 95 (116)
T ss_dssp SSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEccc
Confidence 57999999999999999999999999999999998752 35799999999999999994 787 99999999999854
No 76
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=3.9e-15 Score=118.68 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=70.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.|..+. ...++|||+|.+.++|..|+ .|||..|+|+.|.|..+..
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4799999999999999999999999999999999875 23589999999999999999 5999999999999998854
No 77
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4.4e-15 Score=112.41 Aligned_cols=71 Identities=18% Similarity=0.276 Sum_probs=66.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.+.++ +|||+|+++++|..|+ .|||..|.|+.|.|..+..
T Consensus 10 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 10 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp SEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-----EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-----EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 478999999999999999999999999999999843 9999999999999999 5999999999999998854
No 78
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.61 E-value=3.7e-15 Score=117.36 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=68.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+||++.+|+++|+++|+.||.|.+|+|..+. ...++|||+|.++++|..|+..+|..|+|+.|.|..+.
T Consensus 25 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp -CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 5799999999999999999999999999999999875 23689999999999999999877899999999999875
No 79
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.61 E-value=1.3e-15 Score=122.43 Aligned_cols=74 Identities=8% Similarity=0.162 Sum_probs=68.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCC-ceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSG-DIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG-~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|++||+.|| +|..+.+..+ ...+||||+|+++++|+.|+ .|||..|+|+.|.|..+.
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 36899999999999999999999999 9999999643 35789999999999999999 599999999999999875
No 80
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=116.02 Aligned_cols=75 Identities=24% Similarity=0.354 Sum_probs=69.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.+.++|..|+ .|||..|.|+.|.|..+.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 47999999999999999999999999999999998752 2589999999999999999 599999999999999874
No 81
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.60 E-value=1.1e-15 Score=115.68 Aligned_cols=74 Identities=27% Similarity=0.207 Sum_probs=67.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
++|||+|||+.+|+++|++||+.||.|.++.++.++. ..++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 6899999999999999999999999999888887653 35899999999999999995 99999999999998764
No 82
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3e-15 Score=111.11 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=66.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-h-cCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-L-SGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-L-nG~~L~gr~I~V~~a 76 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.+.++ .++|||+|.++++|..|+. | ||..|+|+.|.|..+
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 478999999999999999999999999999999975 5799999999999999996 7 999999999999875
No 83
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=117.79 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=69.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 47899999999999999999999999999999998753 3579999999999999999 599999999999999874
No 84
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=9.7e-16 Score=118.39 Aligned_cols=74 Identities=24% Similarity=0.362 Sum_probs=68.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---C-CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---E-WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~-~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+||++.+|+++|++||+.|| |.+|+|..+. + ..++|||+|.+.++|..|+.|||..|+|+.|.|..+.
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEecc
Confidence 58999999999999999999999999 9999999874 2 3689999999999999999999999999999999874
No 85
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.2e-15 Score=116.29 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=69.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCcee--------EEEEeeCC---CCCcEEEEEecChHHHHHHHh-hcCCeecCee
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIE--------YVEMKSDN---EWTQIAYVTFKDMQGAETAVL-LSGATIVDLS 70 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~--------~I~l~~d~---~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~ 70 (280)
.++|||+|||+.+|+++|+++|+.||.|. .|+|..+. ...++|||+|.++++|..|+. |||..|.|+.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSK 94 (113)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCE
Confidence 57999999999999999999999999999 69999874 236899999999999999995 9999999999
Q ss_pred EEEEeCCC
Q 023572 71 VSISLAPD 78 (280)
Q Consensus 71 I~V~~a~~ 78 (280)
|.|..+..
T Consensus 95 l~V~~a~~ 102 (113)
T 2cpe_A 95 LKVSLARK 102 (113)
T ss_dssp CEEECSSC
T ss_pred EEEEECCC
Confidence 99998754
No 86
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.60 E-value=1.3e-15 Score=126.47 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=69.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCc---eeEEEEeeCCC--CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGD---IEYVEMKSDNE--WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~---I~~I~l~~d~~--~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a 76 (280)
.++|||+|||+++|+++|++||+.||. |.+|+|+.+.. .+++|||+|.++++|+.||.|||..|+||.|.|..+
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKS 122 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEEC
Confidence 468999999999999999999999999 89999998763 358999999999999999999999999999999886
No 87
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=2.7e-15 Score=111.64 Aligned_cols=70 Identities=23% Similarity=0.471 Sum_probs=66.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccC----C-------ceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCeeE
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFS----G-------DIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSV 71 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~c----G-------~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I 71 (280)
.++|||+|||+.+|+++|+++|+.| | .|.++++..+ .++|||+|.++++|..|+.|||..|.|+.|
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~~l~g~~~~g~~l 82 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAMAFDGIIFQGQSL 82 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHHhcCCCEECCeEE
Confidence 4799999999999999999999999 8 9999999865 689999999999999999999999999999
Q ss_pred EEEe
Q 023572 72 SISL 75 (280)
Q Consensus 72 ~V~~ 75 (280)
.|..
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 88
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=3.2e-15 Score=115.47 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=69.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCee---cCeeEEEEe
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATI---VDLSVSISL 75 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L---~gr~I~V~~ 75 (280)
.++|||+|||+.+|+++|+++|+.||+|.+|.|+.+.. ..++|||+|.++++|..|+ .|||..+ .|+.|.|..
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 92 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 92 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEE
Confidence 47899999999999999999999999999999998753 4689999999999999999 4999998 999999998
Q ss_pred CCC
Q 023572 76 APD 78 (280)
Q Consensus 76 a~~ 78 (280)
+..
T Consensus 93 a~~ 95 (106)
T 2dgp_A 93 ADS 95 (106)
T ss_dssp CCC
T ss_pred CCc
Confidence 853
No 89
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.2e-15 Score=114.63 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=68.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||+|.+|.+..+ .++|||+|.++++|..|+ .|||..|.|+.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 469999999999999999999999999999999865 579999999999999999 6999999999999998854
No 90
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.8e-15 Score=113.01 Aligned_cols=76 Identities=20% Similarity=0.260 Sum_probs=69.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~~ 79 (280)
.++|||+|||+.+|+++|++||+.||.|.+|.|..+.. ..++|||+|.++++|..|+. ++..|+|+.|.|..+..-
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSK 93 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCTT
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecCCC
Confidence 47899999999999999999999999999999998852 35799999999999999998 688999999999988543
No 91
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.3e-16 Score=114.40 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=67.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a 76 (280)
.++|||+|||+.+++++|+++|+.||.|.+|.|..+. ...++|||+|.++++|..|+. |||..|.|+.|+|...
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 5799999999999999999999999999999999875 236899999999999999995 9999999999987654
No 92
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.4e-15 Score=113.46 Aligned_cols=72 Identities=15% Similarity=0.296 Sum_probs=67.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeec--CeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIV--DLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~--gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+.||+|.+|.+..+ .++|||+|.++++|..|+. |||..|. |+.|.|..+.
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 478999999999999999999999999999999865 5799999999999999995 9999999 9999999874
No 93
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.2e-15 Score=114.78 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=66.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+||++.+|+++|+++|+.||.|.+|++.. ..++|||+|.+.++|..|+ .|||..|+|+.|.|..+.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP---EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 47999999999999999999999999999999984 3689999999999999999 699999999999998764
No 94
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=115.04 Aligned_cols=75 Identities=27% Similarity=0.184 Sum_probs=68.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|++||+.||.|.++.++.++. ..++|||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 36899999999999999999999999999888877642 3589999999999999999 799999999999999874
No 95
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.59 E-value=6.1e-15 Score=119.31 Aligned_cols=77 Identities=23% Similarity=0.396 Sum_probs=70.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+||++.+|+++|+++|+.||+|.+|+|..+.. ..++|||+|.+.++|..|+. |||..|.|+.|.|..+..
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 121 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAAS 121 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 47999999999999999999999999999999998853 25899999999999999995 999999999999998864
Q ss_pred C
Q 023572 79 Y 79 (280)
Q Consensus 79 ~ 79 (280)
.
T Consensus 122 ~ 122 (139)
T 1u6f_A 122 G 122 (139)
T ss_dssp C
T ss_pred C
Confidence 3
No 96
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=3.2e-15 Score=114.77 Aligned_cols=73 Identities=30% Similarity=0.424 Sum_probs=68.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
++|||+|||+.+|+++|+++|+.||+|.+|.+..+ ..++|||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 48999999999999999999999999999999987 57899999999999999995 999999999999998854
No 97
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.2e-16 Score=123.11 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=65.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--C-CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--E-WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~-~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a 76 (280)
.++|||+|||+.+|+++|++||+.||.|.++.++.+. + ..++|||+|.++++|..||.|||..|+|+.|.|..+
T Consensus 25 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 25 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 4789999999999999999999999999884444433 2 358999999999999999999999999999999876
No 98
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2e-15 Score=109.88 Aligned_cols=72 Identities=18% Similarity=0.317 Sum_probs=65.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 76 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a 76 (280)
++|||+|||+.+|+++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|..|+. +| ..|+|+.|.|..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999998752 36899999999999999995 66 9999999999865
No 99
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.59 E-value=4e-15 Score=125.30 Aligned_cols=75 Identities=17% Similarity=0.182 Sum_probs=68.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCC--ceeEEEEeeCC--C-CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSG--DIEYVEMKSDN--E-WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG--~I~~I~l~~d~--~-~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
.++|||+||++.+|+++|+++|+.|| +|.+|+|+.+. + ..|||||+|.++++|..|+ .|||..|+|+.|.|..+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 36999999999999999999999999 99999999885 2 3589999999999999999 58999999999999987
Q ss_pred C
Q 023572 77 P 77 (280)
Q Consensus 77 ~ 77 (280)
.
T Consensus 135 ~ 135 (156)
T 3n9u_C 135 T 135 (156)
T ss_dssp C
T ss_pred C
Confidence 3
No 100
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.59 E-value=3.6e-15 Score=118.78 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=69.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--C-CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--E-WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~-~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|++||+.||.|.+|.|..+. + ..++|||+|.++++|..|+ .|||..|+|+.|.|..+..
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 101 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 101 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Confidence 5799999999999999999999999999999999875 2 3689999999999999999 5999999999999998753
No 101
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.8e-15 Score=118.65 Aligned_cols=73 Identities=22% Similarity=0.225 Sum_probs=67.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.|... .++|||+|.++++|..|+ .|||..|.|+.|.|..+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG---GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS---SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 468999999999999999999999999999999853 579999999999999999 5999999999999998754
No 102
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.6e-15 Score=119.59 Aligned_cols=73 Identities=12% Similarity=0.199 Sum_probs=66.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hc--CCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LS--GATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-Ln--G~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+||++|+++|+.||+|.+|.|+++ ++||||+|+++++|..|+. |+ |..|.|++|.|..+..
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 91 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCC
Confidence 479999999999999999999999999999999976 5899999999999999995 65 5899999999988753
No 103
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.58 E-value=2.3e-15 Score=114.37 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=68.7
Q ss_pred cCeEEEeCCCCCCCHHHHH----HHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIK----EFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLk----eFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+++++|+ ++|+.||.|.+|.+...+...++|||+|.++++|..|+. |||..|.|+.|.|..+.
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 87 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEcc
Confidence 5799999999999999999 999999999999998543346899999999999999994 99999999999999874
No 104
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=113.13 Aligned_cols=75 Identities=21% Similarity=0.383 Sum_probs=67.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEE-EeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVE-MKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~-l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|+ ++.+.. .+.|||+|.++++|..|+. |||..|+|+.|.|..+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~-~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE-TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS-SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 47899999999999999999999999999995 776643 3449999999999999995 999999999999998854
No 105
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.58 E-value=4.8e-15 Score=122.12 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=70.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.|..+. ...++|||+|.+.++|..|+ .|||..|+|+.|.|..+..
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 4789999999999999999999999999999999874 24689999999999999999 5999999999999998864
Q ss_pred C
Q 023572 79 Y 79 (280)
Q Consensus 79 ~ 79 (280)
.
T Consensus 150 ~ 150 (158)
T 2kn4_A 150 G 150 (158)
T ss_dssp S
T ss_pred C
Confidence 3
No 106
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=5e-15 Score=114.05 Aligned_cols=76 Identities=18% Similarity=0.167 Sum_probs=69.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHccc-CCceeEEEEeeCC-C-CCcEEEEEecChHHHHHHHh-hcCCe-ecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSF-SGDIEYVEMKSDN-E-WTQIAYVTFKDMQGAETAVL-LSGAT-IVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~-cG~I~~I~l~~d~-~-~~~~A~VtFed~~aA~tALl-LnG~~-L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+. ||.|.+|+|+.+. + ..++|||+|.++++|..|+. |||.. |+|+.|.|..+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~ 88 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 88 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence 478999999999999999999999 9999999999885 2 35899999999999999995 99999 999999999874
Q ss_pred C
Q 023572 78 D 78 (280)
Q Consensus 78 ~ 78 (280)
.
T Consensus 89 ~ 89 (104)
T 2dhg_A 89 P 89 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 107
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.6e-15 Score=118.36 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=67.4
Q ss_pred cCeEEEeCCCC-CCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcC--CeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSL-GATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSG--ATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~-~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG--~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+ .+||++|+++|+.||+|.+|.|+++ .++|||+|+++++|..|+ .||| ..|.|++|.|..+..
T Consensus 15 ~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 15 RRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 47899999999 9999999999999999999999876 369999999999999999 4775 569999999998865
Q ss_pred CC
Q 023572 79 YQ 80 (280)
Q Consensus 79 ~~ 80 (280)
+.
T Consensus 92 ~~ 93 (102)
T 1x4d_A 92 YK 93 (102)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 108
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.58 E-value=4.9e-15 Score=119.01 Aligned_cols=74 Identities=18% Similarity=0.305 Sum_probs=67.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
.++|||+|||+.+|+++|+++|+.||+|.+|++..+. ...++|||+|.++++|..|+ .|||..|+|+.|.|..+
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4799999999999999999999999999999999874 24689999999999999999 69999999999999753
No 109
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.57 E-value=8.5e-15 Score=115.51 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=66.9
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 2 SIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 2 s~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
..++|||+||++.+|+++|+++|+.||.|.+|.+. .++|||+|.+.++|..|+. |||..|+|+.|.|..+.
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 35799999999999999999999999999999998 5799999999999999995 99999999999999874
No 110
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.57 E-value=9e-15 Score=118.18 Aligned_cols=76 Identities=25% Similarity=0.376 Sum_probs=70.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~~ 79 (280)
|+|||+|||+.+|+++|+++|+.||+|.+|.+..+.. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 7999999999999999999999999999999998762 3589999999999999999 79999999999999987543
No 111
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=1.2e-14 Score=112.20 Aligned_cols=70 Identities=16% Similarity=0.278 Sum_probs=66.0
Q ss_pred cCeEEEeCCCC-CCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSL-GATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~-~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
.++|||+||++ .+++++|+++|+.||.|.+|++. .++|||+|.+.++|..|+. |||..|+|+.|.|..+.
T Consensus 22 ~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 22 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp TCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 57999999999 99999999999999999999994 6799999999999999995 99999999999999874
No 112
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.57 E-value=1.1e-14 Score=120.32 Aligned_cols=78 Identities=28% Similarity=0.357 Sum_probs=71.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||+|.+|.|+.+.. ..++|||+|.++++|..|+. |||..|+|+.|.|..+..
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 47999999999999999999999999999999998863 35799999999999999996 999999999999999865
Q ss_pred CC
Q 023572 79 YQ 80 (280)
Q Consensus 79 ~~ 80 (280)
..
T Consensus 119 ~~ 120 (156)
T 1h2v_Z 119 FK 120 (156)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 113
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.57 E-value=5.5e-15 Score=120.38 Aligned_cols=75 Identities=25% Similarity=0.311 Sum_probs=69.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+.||+|.+|+|..+. ...++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 46 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp SSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4789999999999999999999999999999999875 246899999999999999995 99999999999998774
No 114
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.4e-15 Score=113.37 Aligned_cols=78 Identities=13% Similarity=0.075 Sum_probs=68.9
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHcccCCc-eeEEEEe-eCCC---CCcEEEEEecChHHHHHHHh-hc--CCeecCeeEEE
Q 023572 2 SIKTVKVSNVSLGATERGIKEFFSFSGD-IEYVEMK-SDNE---WTQIAYVTFKDMQGAETAVL-LS--GATIVDLSVSI 73 (280)
Q Consensus 2 s~rTV~V~NIs~~tTE~dLkeFFS~cG~-I~~I~l~-~d~~---~~~~A~VtFed~~aA~tALl-Ln--G~~L~gr~I~V 73 (280)
..++|||+|||+.+|+++|+++|+.||. |.+|.+. .+.. ..++|||+|.++++|..|+. || +..|+|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3579999999999999999999999998 9999998 4542 36899999999999999995 85 59999999999
Q ss_pred EeCCCC
Q 023572 74 SLAPDY 79 (280)
Q Consensus 74 ~~a~~~ 79 (280)
..+...
T Consensus 87 ~~a~~~ 92 (109)
T 2dis_A 87 DWAEPE 92 (109)
T ss_dssp EESCSS
T ss_pred EEcCCC
Confidence 988543
No 115
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.4e-14 Score=114.17 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=66.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-h--cCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-L--SGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-L--nG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+||++|+++|+.||+|.+|.|.++ +++|||+|++.++|..|+. | ++..|.|++|.|..+..
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 478999999999999999999999999999999865 6899999999999999994 4 57899999999998853
No 116
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=7.6e-15 Score=112.36 Aligned_cols=73 Identities=21% Similarity=0.260 Sum_probs=66.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+.||.|. +.++.+ ...++|||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 47999999999999999999999999997 677654 45689999999999999999 699999999999999874
No 117
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-14 Score=118.73 Aligned_cols=73 Identities=12% Similarity=0.199 Sum_probs=67.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hc--CCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LS--GATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-Ln--G~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+||++|+++|+.||+|.+|.|+++ +++|||+|++.++|..|+. || +..|.|++|.|..+..
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNH 106 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccC
Confidence 478999999999999999999999999999999976 5899999999999999994 76 5789999999998854
No 118
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.56 E-value=1.1e-14 Score=112.52 Aligned_cols=71 Identities=25% Similarity=0.372 Sum_probs=66.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.+.+ ++|||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-----DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-----SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-----CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 47899999999999999999999999999999973 499999999999999995 999999999999998854
No 119
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.8e-14 Score=109.38 Aligned_cols=71 Identities=27% Similarity=0.388 Sum_probs=66.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccC--CceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFS--GDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~c--G~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.| |.|.+|.+. .++|||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred cCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 4799999999999999999999999 999999886 4699999999999999996 999999999999998753
No 120
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=114.50 Aligned_cols=73 Identities=21% Similarity=0.228 Sum_probs=66.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCC--eecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGA--TIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~--~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+||++|+++|+.||+|.+|.|.++ +++|||+|++.++|..|+. |||. .|.|+.|.|..+..
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccC
Confidence 479999999999999999999999999999999864 5799999999999999994 7654 59999999998854
No 121
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.56 E-value=1.3e-14 Score=113.45 Aligned_cols=71 Identities=18% Similarity=0.299 Sum_probs=66.5
Q ss_pred cCeEEEeCCCCC-CCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLG-ATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~-tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+||++. +|+++|+++|+.||.|.+|.+ ..++|||+|.++++|..|+ .|||..|+|+.|.|..+..
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 379999999999 999999999999999999999 3689999999999999999 7999999999999998853
No 122
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.56 E-value=6.3e-15 Score=121.10 Aligned_cols=73 Identities=25% Similarity=0.341 Sum_probs=68.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|++..+ ..++|||+|.++++|..|+. |||..|.|+.|.|..+.
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 479999999999999999999999999999999876 46899999999999999995 99999999999999874
No 123
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.8e-15 Score=122.45 Aligned_cols=74 Identities=18% Similarity=0.108 Sum_probs=67.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCce----eEEEEeeCC-C-CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDI----EYVEMKSDN-E-WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I----~~I~l~~d~-~-~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a 76 (280)
.++|||+|||+.+|+++|++||+.||.| .+|.|+.+. + .++||||+|+++++|..||.+||..|+||.|.|..+
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRS 102 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEEC
Confidence 4689999999999999999999999875 799999875 2 358999999999999999988999999999999876
No 124
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=7.7e-15 Score=112.33 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=66.4
Q ss_pred cCeEEEeCCCC-CCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSL-GATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~-~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+ .+|+++|+++|+.||.|.+|.+. .++|||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 57899999999 99999999999999999999995 5799999999999999995 999999999999998743
No 125
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=110.86 Aligned_cols=73 Identities=23% Similarity=0.316 Sum_probs=64.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--CCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--EWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.| +++.+. ...++|||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 4799999999999999999999999988 444442 346899999999999999996 999999999999998854
No 126
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.56 E-value=2.8e-14 Score=115.38 Aligned_cols=76 Identities=22% Similarity=0.332 Sum_probs=70.2
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 2 SIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 2 s~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
|.++|||+|||+.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+. |||..|.|+.|.|..+.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 468999999999999999999999999999999998752 24899999999999999995 99999999999999875
No 127
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.55 E-value=5.2e-15 Score=117.58 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=65.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCee-----EEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLS-----VSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~-----I~V~~a 76 (280)
.++|||+|||+.+|+++|++||+.||+|.+|.|..+ ++|||+|+++++|..|+. |||..|+|+. |.|...
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 478999999999999999999999999999999866 899999999999999995 9999999998 777765
Q ss_pred C
Q 023572 77 P 77 (280)
Q Consensus 77 ~ 77 (280)
.
T Consensus 92 ~ 92 (115)
T 3beg_B 92 G 92 (115)
T ss_dssp C
T ss_pred C
Confidence 4
No 128
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=6.7e-15 Score=111.79 Aligned_cols=74 Identities=32% Similarity=0.396 Sum_probs=65.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|..+ ...+...++|||+|.++++|..|+. |||..|+|+.|.|..+..
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 5799999999999999999999999999888 2333346899999999999999996 999999999999998743
No 129
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=119.54 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=68.4
Q ss_pred cCeEEEeCCCCCCCHHHHH----HHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIK----EFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLk----eFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+||++.+++++|+ ++|+.||+|.+|.+...+...|+|||+|.+.++|..|+ .|||..|.|+.|.|..+.
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~ 108 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSE 108 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEcc
Confidence 4789999999999999876 79999999999998765556799999999999999999 699999999999999874
No 130
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=114.84 Aligned_cols=72 Identities=24% Similarity=0.301 Sum_probs=66.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCe--ecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGAT--IVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~--L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+.||+|.+|.++++ +++|||+|++.++|..|+ .|||.. |.|++|.|..+.
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~---kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK---KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 579999999999999999999999999999999864 579999999999999999 599876 789999999874
No 131
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.55 E-value=8.2e-15 Score=112.68 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=68.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.|..+.. ..++|||+|+++++|..|+. ||..|+|+.|.|..+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 47999999999999999999999999999999998862 35899999999999999999 9999999999998763
No 132
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.55 E-value=8.3e-15 Score=120.00 Aligned_cols=77 Identities=23% Similarity=0.370 Sum_probs=70.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..+. ...++|||+|.++++|..|+ .|||..|.|+.|.|..+..
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999774 23689999999999999999 5999999999999998864
Q ss_pred C
Q 023572 79 Y 79 (280)
Q Consensus 79 ~ 79 (280)
-
T Consensus 127 ~ 127 (135)
T 2lea_A 127 G 127 (135)
T ss_dssp C
T ss_pred C
Confidence 3
No 133
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.54 E-value=7.9e-15 Score=120.55 Aligned_cols=73 Identities=25% Similarity=0.249 Sum_probs=66.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCcee--EEEEeeCCC--CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIE--YVEMKSDNE--WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~--~I~l~~d~~--~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a 76 (280)
.++|||+|||+.+||++|++||+.| .|. +|.|+.+.. .+|||||+|+++++|..||.++|..|+||.|.|.++
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 4689999999999999999999999 577 999987752 468999999999999999998999999999999876
No 134
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=3.5e-15 Score=114.61 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=66.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.+ .++.+. ...+||||+|.++++|..|+.|||..|.|+.|.|..+..
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCC
Confidence 478999999999999999999999999988 444432 346899999999999999999999999999999998753
No 135
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=2.8e-15 Score=124.87 Aligned_cols=74 Identities=23% Similarity=0.180 Sum_probs=68.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+||++|++||+.|| |.+|.|+.+.. .+++|||+|+++++|+.||.||+..|+|+.|.|..+.
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 46899999999999999999999999 77999998753 4689999999999999999999999999999998874
No 136
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=3e-14 Score=111.58 Aligned_cols=75 Identities=12% Similarity=0.220 Sum_probs=67.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHHh-hcCCee--------cCeeE
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAVL-LSGATI--------VDLSV 71 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tALl-LnG~~L--------~gr~I 71 (280)
.++|||+|||+.+|+++|+++|+.||+|.+|+|..+.. ..++|||+|.++++|..|+. |||..| .+++|
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l 104 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPL 104 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCce
Confidence 47999999999999999999999999999999998852 25799999999999999995 999999 57778
Q ss_pred EEEeCC
Q 023572 72 SISLAP 77 (280)
Q Consensus 72 ~V~~a~ 77 (280)
.|..+.
T Consensus 105 ~v~~a~ 110 (114)
T 1x5o_A 105 LCKFSG 110 (114)
T ss_dssp EEEECC
T ss_pred eEEccC
Confidence 888764
No 137
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.4e-14 Score=108.31 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=65.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCc-eeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcC-CeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGD-IEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSG-ATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~-I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG-~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||. |..+.+.. .++|||+|.++++|..|+. ||| ..|+|+.|.|..+..
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK----SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE----TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC----CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 479999999999999999999999999 77777743 5799999999999999994 999 999999999998853
No 138
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.54 E-value=3.8e-14 Score=115.28 Aligned_cols=77 Identities=22% Similarity=0.316 Sum_probs=70.5
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 2 SIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 2 s~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
+.++|||+|||+.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 468999999999999999999999999999999998752 3589999999999999999 599999999999999875
Q ss_pred C
Q 023572 78 D 78 (280)
Q Consensus 78 ~ 78 (280)
.
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 3
No 139
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=1.8e-14 Score=113.12 Aligned_cols=70 Identities=10% Similarity=0.093 Sum_probs=66.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
..|+|+||++.+||++|+++|+.+|+|.++.+.. .+|||||+|.++++|..|+ .|||..|.|++|.|..+
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 5799999999999999999999999999999986 3789999999999999999 59999999999999877
No 140
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.9e-14 Score=111.60 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=66.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCce----eEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDI----EYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I----~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+.||.| ..+++. .+...++|||+|.+.++|..|+ .|||..|.|+.|.|..+.
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 4799999999999999999999999999 556655 2344689999999999999999 599999999999999885
Q ss_pred C
Q 023572 78 D 78 (280)
Q Consensus 78 ~ 78 (280)
.
T Consensus 104 ~ 104 (115)
T 2cpx_A 104 N 104 (115)
T ss_dssp C
T ss_pred C
Confidence 4
No 141
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.53 E-value=2.5e-14 Score=119.88 Aligned_cols=75 Identities=23% Similarity=0.260 Sum_probs=69.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
+++|||+|||+.+|+++|+++|+.||.|.+|.|..+.. ..++|||+|.+.++|..|+ .|||..|.|+.|.|..+.
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 46899999999999999999999999999999998752 2589999999999999999 499999999999999874
No 142
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.53 E-value=3.5e-14 Score=107.02 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=66.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.| +|.++++. ...++|||+|.++++|..|+. |||..|+|+.|.|..++.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 5799999999999999999999999 99999995 346899999999999999995 999999999999998854
No 143
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.53 E-value=2.9e-14 Score=123.52 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=71.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDYQ 80 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~~~ 80 (280)
.++|||+|||+.+|+++|++||+.||.|.+|+|.++.. ..|+|||+|+++++|..|+.+.|..|+|+.|.|....+|.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYF 188 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC-
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHHH
Confidence 47999999999999999999999999999999998753 3589999999999999999877789999999999988774
No 144
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=4.5e-14 Score=107.74 Aligned_cols=70 Identities=29% Similarity=0.361 Sum_probs=61.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCee--cCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATI--VDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L--~gr~I~V~~a~ 77 (280)
..+|||+|||+++||++|+++|+.||+|.+|+|+.+ .+|||||+|+++++|. .|+|..+ .|+.|.|..+.
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~---~~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQ---SLCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHH---HHTTCEEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHH---HHcCCCcccCCEEEEEEEcC
Confidence 479999999999999999999999999999999875 5689999999999988 3566665 49999998874
No 145
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.52 E-value=4.1e-14 Score=118.09 Aligned_cols=77 Identities=13% Similarity=0.206 Sum_probs=70.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~~ 79 (280)
.++|||+|||+.+|+++|++||+.||.|.+|.++.+.. ..++|||+|.++++|..|+.++|..|.|+.|.|..+...
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCc
Confidence 47999999999999999999999999999999998853 357999999999999999999999999999999987543
No 146
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=121.70 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=71.5
Q ss_pred CCcCeEEEeCCCC-CCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 1 MSIKTVKVSNVSL-GATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 1 Ms~rTV~V~NIs~-~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
|+.++|||+|||+ .+|+++|+++|+.||.|.+|.+..+. .++|||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 1 m~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 1 MGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 8899999999999 99999999999999999999999875 6799999999999999995 999999999999998753
No 147
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.52 E-value=2.6e-14 Score=127.02 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=68.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCC--ceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSG--DIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG--~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a 76 (280)
.++|||+||++.+|+++|++||+.|| +|.+|+|+.+.. ..+||||+|.+.++|..||. |||..|.|+.|.|..+
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 36899999999999999999999999 999999999852 35899999999999999995 9999999999999977
Q ss_pred C
Q 023572 77 P 77 (280)
Q Consensus 77 ~ 77 (280)
.
T Consensus 148 ~ 148 (229)
T 3q2s_C 148 N 148 (229)
T ss_dssp C
T ss_pred C
Confidence 3
No 148
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.51 E-value=7.4e-14 Score=118.21 Aligned_cols=76 Identities=16% Similarity=0.252 Sum_probs=70.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+||++.+|+++|+++|+.||.|.+|++..+.. ..++|||+|.+.++|..|+. |||..|+|+.|.|..+..
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 47999999999999999999999999999999998852 25899999999999999995 999999999999998854
No 149
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.51 E-value=5.5e-14 Score=121.48 Aligned_cols=75 Identities=25% Similarity=0.240 Sum_probs=69.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.+||||+|||+.+||++|++||+.||+|.+|+|+++.. ..++|||+|.++++|..|+ .|||..+.|+.|.|..+.
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 36999999999999999999999999999999998853 3589999999999999999 699999999999998774
No 150
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=3.2e-14 Score=115.97 Aligned_cols=76 Identities=14% Similarity=0.227 Sum_probs=67.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeE--------EEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEE
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEY--------VEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSI 73 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~--------I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V 73 (280)
.++|||+|||+.+|+++|+++|+.||.|.+ |.+...+...++|||+|.+.++|..|+. |||..|.|+.|.|
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V 124 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV 124 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 468999999999999999999999999886 4445444557899999999999999995 9999999999999
Q ss_pred EeCCC
Q 023572 74 SLAPD 78 (280)
Q Consensus 74 ~~a~~ 78 (280)
..+..
T Consensus 125 ~~a~~ 129 (143)
T 3egn_A 125 QFARS 129 (143)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 98854
No 151
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.51 E-value=6.9e-15 Score=118.95 Aligned_cols=75 Identities=16% Similarity=0.211 Sum_probs=68.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeE--EEEeeCC--C-CCcEEEEEecChHHHHHHH-hhcCC----eecCeeEE
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEY--VEMKSDN--E-WTQIAYVTFKDMQGAETAV-LLSGA----TIVDLSVS 72 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~--I~l~~d~--~-~~~~A~VtFed~~aA~tAL-lLnG~----~L~gr~I~ 72 (280)
.++|||+||++.+||++|+++|+.||.|.. |+|+.+. + .+|||||+|.++ ++..|+ .|||. .|+|+.|.
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~ 101 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTIN 101 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEE
Confidence 478999999999999999999999999977 9999886 2 368999999999 999998 69999 99999999
Q ss_pred EEeCCC
Q 023572 73 ISLAPD 78 (280)
Q Consensus 73 V~~a~~ 78 (280)
|..+..
T Consensus 102 V~~a~~ 107 (131)
T 2m2b_A 102 VEFAKG 107 (131)
T ss_dssp CEECCC
T ss_pred EEECCC
Confidence 998854
No 152
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4e-14 Score=106.29 Aligned_cols=73 Identities=33% Similarity=0.320 Sum_probs=62.2
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 2 SIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 2 s~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
..++|||+|||+.+|+++|+++|+.||.|.+|+|..+ ..++|||+|+++++|+.|+.. +..+.|+.|.|..+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 4589999999999999999999999999999999865 468999999999999754222 344589999998774
No 153
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=8.7e-14 Score=106.70 Aligned_cols=73 Identities=25% Similarity=0.249 Sum_probs=63.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.|+ .|.++.+. ...++|||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 15 SKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp CSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 47899999999999999999999775 55666553 235899999999999999995 999999999999998853
No 154
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.50 E-value=5.5e-14 Score=121.45 Aligned_cols=75 Identities=19% Similarity=0.300 Sum_probs=69.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC-CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE-WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~-~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+||++.+|+++|+++|+.||.|.+|+|+.+.+ ..++|||+|.++++|..|+ .|||..|+|+.|.|..+.
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35899999999999999999999999999999998864 4689999999999999999 599999999999999874
No 155
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.50 E-value=9.2e-14 Score=112.22 Aligned_cols=75 Identities=13% Similarity=0.171 Sum_probs=68.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
.++|+|+|||+.+|+++|+++|+.||.|.++.+..+.. ..++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 87 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 87 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 46899999999999999999999999999999998742 35799999999999999995 99999999999998763
No 156
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.5e-14 Score=115.71 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=66.3
Q ss_pred cCeEEEeCCCCC-CCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hc--CCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLG-ATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LS--GATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~-tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-Ln--G~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+. +|+++|+++|+.||+|.+|.|.+. +++|||+|+++++|..|+. || +..|.|+.|.|..+..
T Consensus 25 ~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 25 GRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM---KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 579999999998 999999999999999999999854 5799999999999999994 65 5679999999998754
Q ss_pred C
Q 023572 79 Y 79 (280)
Q Consensus 79 ~ 79 (280)
.
T Consensus 102 ~ 102 (112)
T 1x4f_A 102 Y 102 (112)
T ss_dssp C
T ss_pred c
Confidence 4
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.50 E-value=9.7e-14 Score=115.79 Aligned_cols=75 Identities=23% Similarity=0.378 Sum_probs=69.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+.++|..|+|+.|.|..+.
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 37899999999999999999999999999999998852 3589999999999999999889999999999999874
No 158
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.9e-13 Score=104.55 Aligned_cols=71 Identities=25% Similarity=0.328 Sum_probs=64.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|+ .+|+++|+++|+.||+|.+|.|. ...++|||+|.++++|..|+ .|||..|.|+.|.|..+..
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 479999995 89999999999999999999995 34679999999999999999 6999999999999998743
No 159
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.49 E-value=4.1e-14 Score=115.22 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=69.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
.++|+|+|||+.+|+++|+++|+.||.|.++.+..+. ...++|||+|.++++|..|+.|||..|+|+.|.|..+.
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecC
Confidence 3689999999999999999999999999999999874 24689999999999999999999999999999999874
No 160
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.49 E-value=9.2e-14 Score=113.68 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=68.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--C-CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--E-WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~-~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a 76 (280)
.++|+|+|||+.+|+++|+++|+.||.|.+|.+..+. + ..++|||+|.++++|..|+. |||..|+|+.|.|..+
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3689999999999999999999999999999999885 2 25899999999999999995 9999999999999876
No 161
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.48 E-value=9.2e-14 Score=117.63 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=67.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|++||+.||+|.+|.|+.+. ...++|||+|.++++|..|+. |||..|.|+.|.|..+.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 3689999999999999999999999999999998875 246899999999999999996 99999999999997653
No 162
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=109.55 Aligned_cols=73 Identities=21% Similarity=0.211 Sum_probs=60.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC------CCCcEEEEEecChHHHHHHHh-h---cCC--------
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN------EWTQIAYVTFKDMQGAETAVL-L---SGA-------- 64 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~------~~~~~A~VtFed~~aA~tALl-L---nG~-------- 64 (280)
.++|||+|||+.+|+++|+++|+.||+|. +.++.+. ...+||||+|+++++|..|+. | ||.
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~~ 86 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSP 86 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECCS
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccCC
Confidence 47899999999999999999999999999 7777664 236899999999999999994 5 555
Q ss_pred eecCeeEEEEeC
Q 023572 65 TIVDLSVSISLA 76 (280)
Q Consensus 65 ~L~gr~I~V~~a 76 (280)
.+.++.|.|.|+
T Consensus 87 ~~~~~~~~v~p~ 98 (114)
T 2dnl_A 87 TIKDKPVQIRPW 98 (114)
T ss_dssp SSCSEEEEEECC
T ss_pred CcCCCeeeccCC
Confidence 445556666655
No 163
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.48 E-value=1.2e-13 Score=120.48 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=68.7
Q ss_pred CcCeEEEeCCC-CCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 2 SIKTVKVSNVS-LGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 2 s~rTV~V~NIs-~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.+++|||+||+ +.+|+++|+++|+.||.|.+|+++.+ ..++|||+|.++++|..|+ .|||..|.|+.|.|..+.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 46899999999 79999999999999999999999865 3689999999999999999 599999999999999875
No 164
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.47 E-value=1.6e-13 Score=122.57 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=71.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC-CCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN-EWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPDY 79 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~-~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~~ 79 (280)
.++|||+|||+.+|+++|++||+.||+|.+|.|..+. +..++|||+|.++++|..|+.|||..|.|+.|.|.++...
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~ 118 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLTEC 118 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECCSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECCCC
Confidence 5799999999999999999999999999999999876 3479999999999999999999999999999999987543
No 165
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.47 E-value=7.4e-14 Score=119.63 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=69.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--CCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--EWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
+++|||+||++.+|+++|++||+.||.|.+|.|..+. ...++|||+|.++++|..|+. |||..|+|+.|.|..+..
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 4689999999999999999999999999999999875 235899999999999999995 999999999999998753
No 166
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.46 E-value=2.2e-13 Score=111.37 Aligned_cols=76 Identities=25% Similarity=0.487 Sum_probs=68.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccC----C-------ceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCeeE
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFS----G-------DIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSV 71 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~c----G-------~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I 71 (280)
.++|||+|||+.+|+++|++||+.| | .|.++.+..+ .++|||+|.++++|..|+.|||..|.|+.|
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~---~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 80 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT---TTEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC---CCEEEEEeCCHHHHHHHHHhCCcEecCcee
Confidence 5899999999999999999999999 6 7788877654 689999999999999999999999999999
Q ss_pred EEEeCCCCCC
Q 023572 72 SISLAPDYQL 81 (280)
Q Consensus 72 ~V~~a~~~~~ 81 (280)
.|..+..+..
T Consensus 81 ~v~~~~~~~~ 90 (172)
T 2g4b_A 81 KIRRPHDYQP 90 (172)
T ss_dssp EEECCSSCCC
T ss_pred eecCCcccCC
Confidence 9998765544
No 167
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.18 E-value=5.8e-15 Score=116.46 Aligned_cols=75 Identities=21% Similarity=0.323 Sum_probs=68.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeE--------EEEeeCC---CCCcEEEEEecChHHHHHHHh-hcCCeecCee
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEY--------VEMKSDN---EWTQIAYVTFKDMQGAETAVL-LSGATIVDLS 70 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~--------I~l~~d~---~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~ 70 (280)
.++|||+|||+.+|+++|+++|+.||.|.+ |.|..+. ...++|||+|.++++|..|+. |||..|.|+.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 86 (116)
Confidence 478999999999999999999999999999 8888774 236899999999999999995 9999999999
Q ss_pred EEEEeCC
Q 023572 71 VSISLAP 77 (280)
Q Consensus 71 I~V~~a~ 77 (280)
|.|..+.
T Consensus 87 l~V~~a~ 93 (116)
T 2lcw_A 87 IKVSFAT 93 (116)
Confidence 9999874
No 168
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.45 E-value=2.8e-13 Score=110.58 Aligned_cols=74 Identities=24% Similarity=0.305 Sum_probs=67.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHH-hhcCCeecC---eeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAV-LLSGATIVD---LSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tAL-lLnG~~L~g---r~I~V~~a 76 (280)
.++|+|+|||+.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.++++|..|+ .|||..+.+ ++|.|..+
T Consensus 95 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 95 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp GSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 47899999999999999999999999999999998853 3579999999999999999 699998874 99999876
No 169
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.45 E-value=2e-13 Score=111.38 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=67.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC-----CCcEEEEEecChHHHHHHH-hhcCCeec---CeeEEE
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE-----WTQIAYVTFKDMQGAETAV-LLSGATIV---DLSVSI 73 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~-----~~~~A~VtFed~~aA~tAL-lLnG~~L~---gr~I~V 73 (280)
.++|||+|||+.+|+++|+++|+.||+|.+|+++.+.. ..++|||+|.++++|..|+ .|||..+. ++.|.|
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 57999999999999999999999999999999998862 2589999999999999999 59999887 677888
Q ss_pred EeCC
Q 023572 74 SLAP 77 (280)
Q Consensus 74 ~~a~ 77 (280)
.+..
T Consensus 83 ~~~~ 86 (175)
T 3nmr_A 83 KPAD 86 (175)
T ss_dssp EECG
T ss_pred cccc
Confidence 7764
No 170
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.44 E-value=2.2e-13 Score=110.95 Aligned_cols=74 Identities=12% Similarity=0.224 Sum_probs=67.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC---CCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN---EWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~---~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|+++|+.||.|.+|.++.+. ...++|||+|.++++|..|+. ++..|+|+.|.|..+.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEccccccc
Confidence 5899999999999999999999999999999999874 246899999999999999998 4789999999988763
No 171
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.44 E-value=3.4e-13 Score=112.65 Aligned_cols=75 Identities=15% Similarity=0.257 Sum_probs=69.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--C-CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--E-WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~-~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
.++|+|+|||+.+|+++|+++|+.||.|.+|.+..+. + ..++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 114 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 114 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 4799999999999999999999999999999999885 2 25899999999999999995 99999999999999874
No 172
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.44 E-value=3.8e-13 Score=112.36 Aligned_cols=77 Identities=23% Similarity=0.428 Sum_probs=67.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccC----C-------ceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCeeE
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFS----G-------DIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSV 71 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~c----G-------~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I 71 (280)
.|+|||+|||+.+|+++|++||+.| | .|.++.+.. ..++|||+|.++++|..|+.|||..|.|+.|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~---~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i 80 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET---TTTEEEEEESCSHHHHHHGGGTTEEETTEEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC---CCCEEEEEeCCHHHHHHHHHhcCCEEcCceE
Confidence 4899999999999999999999999 4 666666643 3689999999999999999999999999999
Q ss_pred EEEeCCCCCCC
Q 023572 72 SISLAPDYQLP 82 (280)
Q Consensus 72 ~V~~a~~~~~~ 82 (280)
.|..+..+..+
T Consensus 81 ~v~~~~~~~~~ 91 (198)
T 2yh0_A 81 KIRRPHDYQPL 91 (198)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99988766443
No 173
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.43 E-value=4.5e-13 Score=108.90 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=67.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecC--eeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVD--LSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~g--r~I~V~~a 76 (280)
.++|+|+|||+.+|+++|+++|+.||.|.++.+..+.. ..++|||+|.++++|..|+. |||..|.| ++|.|..+
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 47899999999999999999999999999999998752 25899999999999999995 99999988 99999753
No 174
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.43 E-value=3.7e-13 Score=110.83 Aligned_cols=73 Identities=33% Similarity=0.389 Sum_probs=65.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
.++|+|+|||+.+|+++|+++|+.||.|..+ ...+...++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 4789999999999999999999999999888 2223456899999999999999995 99999999999999874
No 175
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.8e-13 Score=111.23 Aligned_cols=74 Identities=9% Similarity=0.281 Sum_probs=66.4
Q ss_pred cCeEEE--eCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCee-----cCeeEEEE
Q 023572 3 IKTVKV--SNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATI-----VDLSVSIS 74 (280)
Q Consensus 3 ~rTV~V--~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L-----~gr~I~V~ 74 (280)
.++||| +||++.+||++|+++|+.||+|.+|.|..+ ++||||+|+++++|..|+ .|||.+| .|++|.|.
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 468999 669999999999999999999999999753 579999999999999999 5999999 78999998
Q ss_pred eCCCC
Q 023572 75 LAPDY 79 (280)
Q Consensus 75 ~a~~~ 79 (280)
.+.+.
T Consensus 102 ~a~~~ 106 (114)
T 2cq2_A 102 FVEKV 106 (114)
T ss_dssp EESCC
T ss_pred ecccC
Confidence 87543
No 176
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.42 E-value=4.3e-13 Score=119.12 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=70.0
Q ss_pred cCeEEEeCCCCCCCHHHHH----HHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIK----EFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLk----eFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.++|||+||++.+|+++|+ ++|+.||.|.+|.+.+.+...++|||+|.+.++|..|+ .|||..|.|+.|.|..+.
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 88 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 88 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEec
Confidence 4799999999999999977 99999999999999986556789999999999999999 799999999999999774
Q ss_pred C
Q 023572 78 D 78 (280)
Q Consensus 78 ~ 78 (280)
.
T Consensus 89 ~ 89 (282)
T 3pgw_A 89 T 89 (282)
T ss_pred c
Confidence 3
No 177
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.42 E-value=3.2e-13 Score=117.83 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=69.1
Q ss_pred cCeEEEeCCCC-CCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSL-GATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~-~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+ .+|+++|++||+.||.|.+|+|..+. .++|||+|.++++|..|+. |||..|.|+.|.|..+..
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 47999999999 99999999999999999999999875 6799999999999999995 999999999999998754
No 178
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.42 E-value=4.4e-13 Score=115.41 Aligned_cols=74 Identities=22% Similarity=0.216 Sum_probs=66.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecC--eeEEEEeCCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVD--LSVSISLAPD 78 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~g--r~I~V~~a~~ 78 (280)
.+|||+||++.+|+++|+++|+.||+|.+|.|..+. ..++|||+|++.++|..|+. |||..|.| +.|+|..+..
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~-~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS-SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 368999999999999999999999999999997543 45799999999999999994 99999965 9999998753
No 179
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.42 E-value=8.9e-13 Score=109.44 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=65.2
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcE-EEEEecChHHHHHHH-hhcCCeecC--eeEEEEeCC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQI-AYVTFKDMQGAETAV-LLSGATIVD--LSVSISLAP 77 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~-A~VtFed~~aA~tAL-lLnG~~L~g--r~I~V~~a~ 77 (280)
.|||+||++.+|+++|+++|+.||+|.+|.+..+. .++ |||+|+++++|..|+ .|||..|.| +.|+|..+.
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~--~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET--TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC--CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 58999999999999999999999999999998653 467 999999999999999 599999998 899999775
No 180
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.41 E-value=4.3e-13 Score=112.46 Aligned_cols=75 Identities=23% Similarity=0.310 Sum_probs=64.9
Q ss_pred CCcCeEEEeCC----CCCCCHHHHHHHcccCCceeEEEEeeCCCC---CcEEEEEecC----h-HH---HHHHHh---hc
Q 023572 1 MSIKTVKVSNV----SLGATERGIKEFFSFSGDIEYVEMKSDNEW---TQIAYVTFKD----M-QG---AETAVL---LS 62 (280)
Q Consensus 1 Ms~rTV~V~NI----s~~tTE~dLkeFFS~cG~I~~I~l~~d~~~---~~~A~VtFed----~-~a---A~tALl---Ln 62 (280)
|+ ..|+|+|| |+.++|.+|++||+.||+|.+++++.|+.+ .|||||+|.| + ++ |..|+. ||
T Consensus 1 mp-~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 1 MS-CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp -C-CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred CC-cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 55 68999999 999999999999999999999999999854 6899999996 3 32 777765 89
Q ss_pred CCeecCeeEEEEeC
Q 023572 63 GATIVDLSVSISLA 76 (280)
Q Consensus 63 G~~L~gr~I~V~~a 76 (280)
|..|+|+.|.|...
T Consensus 80 g~~I~Gr~irV~ln 93 (136)
T 2j8a_A 80 GCFIMGFKFEVILN 93 (136)
T ss_dssp CEEETTEEEEEEEC
T ss_pred CCeecCcEEEEEEC
Confidence 99999999999865
No 181
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=9.5e-13 Score=108.03 Aligned_cols=70 Identities=21% Similarity=0.231 Sum_probs=63.6
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcE-EEEEecChHHHHHHH-hhcCCeecC--eeEEEEeCC
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQI-AYVTFKDMQGAETAV-LLSGATIVD--LSVSISLAP 77 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~-A~VtFed~~aA~tAL-lLnG~~L~g--r~I~V~~a~ 77 (280)
.|||+||++.+|+++|+++|+.||+|.+|.|... .+| |||+|++.++|..|+ .|||..|.| +.|.|..+.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4789999999999999999999999999999763 376 999999999999999 599999988 689998774
No 182
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.41 E-value=4.2e-13 Score=130.04 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=69.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC--C-CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN--E-WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~--~-~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
++|||+||++.+|+++|++||+.||.|..|.|+.+. + ..+||||+|.++++|..|| .|||..|.|+.|.|..+..
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 699999999999999999999999999999999874 2 3689999999999999999 7999999999999998753
No 183
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.40 E-value=9.9e-13 Score=106.22 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=65.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHHh-hcCCeecCee--EEEEe
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAVL-LSGATIVDLS--VSISL 75 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tALl-LnG~~L~gr~--I~V~~ 75 (280)
.++|+|+|||+.+|+++|+++|+.||.|.++++..+.. ..++|||+|.++++|..|+. |||..|.|+. |.|..
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 46899999999999999999999999999999998752 25899999999999999995 9999999975 77764
No 184
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.38 E-value=1.5e-12 Score=105.03 Aligned_cols=71 Identities=25% Similarity=0.328 Sum_probs=64.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|+ .+|+++|+++|+.||+|.+|.+. ...++|||+|.+.++|..|+ .|||..|.|+.|.|..+..
T Consensus 39 ~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 39 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 479999995 79999999999999999999996 34689999999999999999 6999999999999998753
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.38 E-value=1.2e-12 Score=116.44 Aligned_cols=72 Identities=22% Similarity=0.276 Sum_probs=67.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
.++|||+|||+.+|+++|++||+.||.|.+|.+.++ .++|||+|.++++|..|+. |||..|.|+.|.|..+.
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD---RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 368999999999999999999999999999999754 5899999999999999995 99999999999999875
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.38 E-value=1.1e-12 Score=117.04 Aligned_cols=75 Identities=23% Similarity=0.328 Sum_probs=69.8
Q ss_pred cCeEEEeCCCCC-CCHHHHHHHcccCCceeEEEEeeCCC----CCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLG-ATERGIKEFFSFSGDIEYVEMKSDNE----WTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~-tTE~dLkeFFS~cG~I~~I~l~~d~~----~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
.++|+|+|||+. +|+++|+++|+.||.|.+|++..+.. ..++|||+|.++++|..|+.|||..|+|+.|.|..+.
T Consensus 210 ~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~ 289 (292)
T 2ghp_A 210 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLAD 289 (292)
T ss_dssp TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECC
T ss_pred CceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEec
Confidence 478999999999 99999999999999999999998743 3689999999999999999999999999999999874
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.37 E-value=1.4e-12 Score=115.74 Aligned_cols=72 Identities=22% Similarity=0.251 Sum_probs=67.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeec-CeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIV-DLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~-gr~I~V~~a 76 (280)
.++|||+||++.+|+++|+++|+.||.|.+|++..+. .++|||+|.+.++|..|+. |||..|+ |+.|.|..+
T Consensus 207 ~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 4789999999999999999999999999999999654 5799999999999999995 9999999 999999875
No 188
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.37 E-value=3.8e-12 Score=100.76 Aligned_cols=75 Identities=19% Similarity=0.092 Sum_probs=66.3
Q ss_pred cCeEEEeCCCC-----CCCHHHHHHHcccCCceeEEEEeeCC----CCCcEEEEEecChHHHHHHH-hhcCCeecCeeEE
Q 023572 3 IKTVKVSNVSL-----GATERGIKEFFSFSGDIEYVEMKSDN----EWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVS 72 (280)
Q Consensus 3 ~rTV~V~NIs~-----~tTE~dLkeFFS~cG~I~~I~l~~d~----~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~ 72 (280)
.++|++.||.. .-++++|++.|+.||+|.+|.|..++ ...|++||+|.++++|..|+ .|||..++||.|.
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~ 87 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVK 87 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEE
Confidence 57999999973 34899999999999999999999874 23689999999999999999 5999999999999
Q ss_pred EEeCC
Q 023572 73 ISLAP 77 (280)
Q Consensus 73 V~~a~ 77 (280)
|..+.
T Consensus 88 v~~a~ 92 (105)
T 2pe8_A 88 ACFYN 92 (105)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99874
No 189
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=2.3e-12 Score=102.41 Aligned_cols=69 Identities=16% Similarity=0.252 Sum_probs=61.6
Q ss_pred Ce-EEEeCCCCCCCHHH----HHHHcccC-CceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 4 KT-VKVSNVSLGATERG----IKEFFSFS-GDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 4 rT-V~V~NIs~~tTE~d----LkeFFS~c-G~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
.| |||+|||+++++++ |+++|+.| |+|.+|. .|+|||+|.+.++|..|+ .|||..|.||+|+|..+
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 35 99999999999998 55899999 5999992 389999999999999999 59999999999999988
Q ss_pred CCC
Q 023572 77 PDY 79 (280)
Q Consensus 77 ~~~ 79 (280)
...
T Consensus 82 ~~~ 84 (96)
T 2diu_A 82 PKN 84 (96)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.36 E-value=3.6e-13 Score=110.95 Aligned_cols=76 Identities=13% Similarity=0.123 Sum_probs=65.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeC--CCCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSD--NEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d--~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|..+.+... +...++|||+|.++++|..|+.|||..|.|+.|.|..+..
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCC
Confidence 478999999999999999999999998877333322 2356899999999999999999999999999999998754
No 191
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.3e-12 Score=100.00 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=65.0
Q ss_pred cCeEEEeCCCCCCC-----------HHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCee
Q 023572 3 IKTVKVSNVSLGAT-----------ERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLS 70 (280)
Q Consensus 3 ~rTV~V~NIs~~tT-----------E~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~ 70 (280)
.++|+|.||..... +++|+++|+.||+|.+|.| .+....++|||+|.++++|..|+ .|||..|+|+.
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 93 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQ 93 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEE
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 47899999955433 6899999999999999966 55556799999999999999999 69999999999
Q ss_pred EEEEeCC
Q 023572 71 VSISLAP 77 (280)
Q Consensus 71 I~V~~a~ 77 (280)
|.|..+.
T Consensus 94 l~v~~a~ 100 (112)
T 2dit_A 94 ITAQAWD 100 (112)
T ss_dssp CEEEECC
T ss_pred EEEEEeC
Confidence 9999874
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.34 E-value=4.4e-12 Score=112.70 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=68.9
Q ss_pred cCeEEEeCCCCC-CCHHHHHHHcccCCceeEEEEeeCC-C-CCcEEEEEecChHHHHHHHh-hcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLG-ATERGIKEFFSFSGDIEYVEMKSDN-E-WTQIAYVTFKDMQGAETAVL-LSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~-tTE~dLkeFFS~cG~I~~I~l~~d~-~-~~~~A~VtFed~~aA~tALl-LnG~~L~gr~I~V~~a~ 77 (280)
.++|+|+|||+. +|+++|+++|+.||.|.+++|..+. + ..++|||+|.++++|..|+. |||..|+|+.|.|..+.
T Consensus 184 ~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 262 (284)
T 3smz_A 184 SRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCA 262 (284)
T ss_dssp CSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEec
Confidence 578999999999 5999999999999999999999875 2 36899999999999999995 99999999999999873
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.31 E-value=2.3e-12 Score=108.53 Aligned_cols=73 Identities=18% Similarity=0.323 Sum_probs=67.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCC-ceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeec-CeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSG-DIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIV-DLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG-~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~-gr~I~V~~a~ 77 (280)
.++|+|+|||+.+|+++|+++|+.|| .|.+|++.+++ .++|||+|.+.++|..|+. |||..|+ |+.|.|..+.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 57899999999999999999999999 99999997653 6799999999999999995 9999999 9999998763
No 194
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.31 E-value=3.2e-12 Score=115.80 Aligned_cols=73 Identities=26% Similarity=0.300 Sum_probs=67.4
Q ss_pred cCeEEEeCCCCCC---------CHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCee------
Q 023572 3 IKTVKVSNVSLGA---------TERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATI------ 66 (280)
Q Consensus 3 ~rTV~V~NIs~~t---------TE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L------ 66 (280)
.+||||+||++.+ +|++|+++|+.||+|.+|+|+.+ .++|||+|.+.++|+.|+ .|||..|
T Consensus 134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---KNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred CceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---CCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 4799999999998 79999999999999999999965 579999999999999999 5999999
Q ss_pred ------cCeeEEEEeCCC
Q 023572 67 ------VDLSVSISLAPD 78 (280)
Q Consensus 67 ------~gr~I~V~~a~~ 78 (280)
.|+.|.|..+..
T Consensus 211 e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANE 228 (240)
T ss_dssp TGGGGGGSCCCEEEECC-
T ss_pred cccccCCCCEEEEEEccC
Confidence 899999998854
No 195
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.31 E-value=8.6e-12 Score=110.82 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=69.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC---CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE---WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAPD 78 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~---~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~~ 78 (280)
.++|||+|||+.+|+++|+++|+.||.|.++.++.+.. ..++|||+|.+++++..|+ .|||..|+|+.|.|..+..
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 46899999999999999999999999999999998752 3579999999999999999 7999999999999998753
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.30 E-value=6.6e-12 Score=109.49 Aligned_cols=73 Identities=18% Similarity=0.289 Sum_probs=67.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCC-ceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hcCCeec-CeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSG-DIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LSGATIV-DLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG-~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-LnG~~L~-gr~I~V~~a~ 77 (280)
.++|+|+||++.+|+++|+++|+.|| +|.+|++..+ ..++|||+|.+.++|..|+. |||..|+ |+.|.|..+.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 47899999999999999999999999 9999999764 25799999999999999995 9999999 9999998764
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.29 E-value=3.4e-12 Score=111.18 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=61.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCce--eEEEEeeCCC-CCcEEEEEecChHHHHHHH-hhcCCeecCe
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDI--EYVEMKSDNE-WTQIAYVTFKDMQGAETAV-LLSGATIVDL 69 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I--~~I~l~~d~~-~~~~A~VtFed~~aA~tAL-lLnG~~L~gr 69 (280)
.++|||+|||+.+|+++|+++|+.||.| .+|++..+.+ .+++|||+|++.++|..|+ .|||..|.|+
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 3589999999999999999999999999 9999988763 4589999999999999999 5999999987
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.25 E-value=1.2e-11 Score=109.99 Aligned_cols=77 Identities=21% Similarity=0.226 Sum_probs=67.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHH-hh-cCCeec---CeeEEEEe
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAV-LL-SGATIV---DLSVSISL 75 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tAL-lL-nG~~L~---gr~I~V~~ 75 (280)
+++|+|+|||+.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.+.++|..|+ .| +|..+. +++|.|.+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~ 175 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEP 175 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEee
Confidence 47899999999999999999999999999999998852 3589999999999999999 57 455555 99999998
Q ss_pred CCCC
Q 023572 76 APDY 79 (280)
Q Consensus 76 a~~~ 79 (280)
+...
T Consensus 176 ~~~~ 179 (261)
T 3sde_A 176 MEQF 179 (261)
T ss_dssp CCCE
T ss_pred cccc
Confidence 8643
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.18 E-value=1.1e-11 Score=97.80 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=57.5
Q ss_pred eCCCCCCCHHHHHHHc------------ccCCceeEEEEeeCCC--CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEE
Q 023572 9 SNVSLGATERGIKEFF------------SFSGDIEYVEMKSDNE--WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSI 73 (280)
Q Consensus 9 ~NIs~~tTE~dLkeFF------------S~cG~I~~I~l~~d~~--~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V 73 (280)
.||++.+++++|+++| +.||+|.+|.|.++.. ..|+|||+|+++++|..|+ .|||..++||.|.|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 3444556777777666 9999999999998752 3689999999999999999 59999999999999
Q ss_pred EeCC
Q 023572 74 SLAP 77 (280)
Q Consensus 74 ~~a~ 77 (280)
..++
T Consensus 101 ~~sp 104 (104)
T 1jmt_A 101 ELSP 104 (104)
T ss_dssp EECC
T ss_pred EEcC
Confidence 8753
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.17 E-value=7.2e-11 Score=93.26 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=64.0
Q ss_pred cCeEEEeCCCC--CC--------CHHHHHHHcccCCceeEEEEeeCCC-----CCcEEEEEecChHHHHHHH-hhcCCee
Q 023572 3 IKTVKVSNVSL--GA--------TERGIKEFFSFSGDIEYVEMKSDNE-----WTQIAYVTFKDMQGAETAV-LLSGATI 66 (280)
Q Consensus 3 ~rTV~V~NIs~--~t--------TE~dLkeFFS~cG~I~~I~l~~d~~-----~~~~A~VtFed~~aA~tAL-lLnG~~L 66 (280)
.+.|.+.|+-. .. .+++|++.|+.||+|.+|.|.++.. ..|++||+|+++++|..|+ .|||..+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 47899999833 22 3579999999999999999987752 3689999999999999999 6999999
Q ss_pred cCeeEEEEeC
Q 023572 67 VDLSVSISLA 76 (280)
Q Consensus 67 ~gr~I~V~~a 76 (280)
+||.|.|..+
T Consensus 85 ~GR~i~v~~~ 94 (105)
T 3v4m_A 85 ANRVVVTKYC 94 (105)
T ss_dssp TTEECEEEEE
T ss_pred CCCEEEEEEe
Confidence 9999999876
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.11 E-value=2.5e-10 Score=92.49 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=64.9
Q ss_pred cCeEEEeCCCC-----CCCHHHHHHHcccCCceeEEEEeeCCC-------CCcEEEEEecChHHHHHHH-hhcCCeecCe
Q 023572 3 IKTVKVSNVSL-----GATERGIKEFFSFSGDIEYVEMKSDNE-------WTQIAYVTFKDMQGAETAV-LLSGATIVDL 69 (280)
Q Consensus 3 ~rTV~V~NIs~-----~tTE~dLkeFFS~cG~I~~I~l~~d~~-------~~~~A~VtFed~~aA~tAL-lLnG~~L~gr 69 (280)
.++|++.|+-. .--+++|++.|+.||+|.+|.|+.+.. ..+++||+|.++++|..|+ .|||..++||
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 57899999853 224799999999999999999998742 1389999999999999999 5999999999
Q ss_pred eEEEEeCC
Q 023572 70 SVSISLAP 77 (280)
Q Consensus 70 ~I~V~~a~ 77 (280)
.|.|..++
T Consensus 100 ~i~v~~~~ 107 (118)
T 3ue2_A 100 KVVAEVYD 107 (118)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEcC
Confidence 99998763
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.4e-09 Score=85.70 Aligned_cols=71 Identities=21% Similarity=0.202 Sum_probs=58.9
Q ss_pred CeEEEeCCC-------CCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeC
Q 023572 4 KTVKVSNVS-------LGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 76 (280)
Q Consensus 4 rTV~V~NIs-------~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a 76 (280)
+++.|.-.. +.+|+++|+++|+.||+|.+|.|+. ...+||||+|+++++|..|+.. +..+.|++|.|..+
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~--~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a 87 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS--KKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWL 87 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES--SSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECS
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc--CCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEc
Confidence 456666544 4689999999999999999999983 4568999999999999999964 44478999999876
Q ss_pred C
Q 023572 77 P 77 (280)
Q Consensus 77 ~ 77 (280)
.
T Consensus 88 ~ 88 (100)
T 2d9o_A 88 E 88 (100)
T ss_dssp S
T ss_pred c
Confidence 4
No 203
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=7.5e-10 Score=90.98 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=64.0
Q ss_pred CcCeEEEeCCCCC-CCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecC-hHHHHHHH-hh--cCCeecCeeEEEEeC
Q 023572 2 SIKTVKVSNVSLG-ATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKD-MQGAETAV-LL--SGATIVDLSVSISLA 76 (280)
Q Consensus 2 s~rTV~V~NIs~~-tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed-~~aA~tAL-lL--nG~~L~gr~I~V~~a 76 (280)
.|.-|+|+||++. +++++|+++|+.||+|.+|++..++. +|||.|.+ +.+|..|+ .| +|.+|.|..++++..
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 3678999999999 99999999999999999999987754 79999999 78888888 47 488999999999866
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.01 E-value=1.1e-09 Score=88.32 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=64.0
Q ss_pred CcCeEEEeCCCCCC----------CHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCee
Q 023572 2 SIKTVKVSNVSLGA----------TERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLS 70 (280)
Q Consensus 2 s~rTV~V~NIs~~t----------TE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~ 70 (280)
..+.|.+.|+=..- -+++|++.|+.||+|.+|.|.++. ..|++||+|.++++|..|+ .|||..++||.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-AQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-TTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 35788999985533 356889999999999999997653 4789999999999999999 59999999999
Q ss_pred EEEEeCC
Q 023572 71 VSISLAP 77 (280)
Q Consensus 71 I~V~~a~ 77 (280)
|.|..+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999764
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.01 E-value=5.4e-10 Score=105.99 Aligned_cols=71 Identities=13% Similarity=0.291 Sum_probs=61.5
Q ss_pred cCeEEEeC--CCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeec---Ce--eEEEE
Q 023572 3 IKTVKVSN--VSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIV---DL--SVSIS 74 (280)
Q Consensus 3 ~rTV~V~N--Is~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~---gr--~I~V~ 74 (280)
.++|||+| |++.+||++|+++|+.||+|.+|.|.. .++||||+|++.++|+.|+ .|||.++. |+ .|.|.
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 47899999 588999999999999999999998865 3589999999999999999 59999994 44 56666
Q ss_pred eC
Q 023572 75 LA 76 (280)
Q Consensus 75 ~a 76 (280)
..
T Consensus 95 ~~ 96 (345)
T 3tht_A 95 FV 96 (345)
T ss_dssp EC
T ss_pred Ee
Confidence 55
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=7.1e-09 Score=81.57 Aligned_cols=70 Identities=23% Similarity=0.300 Sum_probs=60.9
Q ss_pred cCeEEEeCCCC----CCCH----HHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEE
Q 023572 3 IKTVKVSNVSL----GATE----RGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSIS 74 (280)
Q Consensus 3 ~rTV~V~NIs~----~tTE----~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~ 74 (280)
+-||.|...+. ..-. .+|.+.|+.||+|..+++..+. +||+|.+.++|.+|+.|||..++||.|+|.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-----~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-----MWVTFLEGSSALNVLSLNGKELLNRTITIA 81 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-----EEEEESSHHHHHHGGGGTTCEETTEEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-----EEEEECChHHHHHHHhcCCeEeCCeEEEEE
Confidence 35888888763 3334 6799999999999999999763 899999999999999999999999999999
Q ss_pred eCC
Q 023572 75 LAP 77 (280)
Q Consensus 75 ~a~ 77 (280)
.+.
T Consensus 82 lkt 84 (91)
T 2dnr_A 82 LKS 84 (91)
T ss_dssp ECC
T ss_pred eCC
Confidence 874
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=2.2e-08 Score=79.39 Aligned_cols=68 Identities=24% Similarity=0.218 Sum_probs=59.9
Q ss_pred CeEEEeCCCCC-----CCH----HHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEE
Q 023572 4 KTVKVSNVSLG-----ATE----RGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSIS 74 (280)
Q Consensus 4 rTV~V~NIs~~-----tTE----~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~ 74 (280)
-||.|..+++. .-. .+|.+.|+.||+|..+++..+. +||+|.+.++|..|+.|||..++||.|+|.
T Consensus 16 ~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~ 90 (95)
T 1ufw_A 16 ATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----MLVTFADSHSALSVLDVDGMKVKGRAVKIS 90 (95)
T ss_dssp CEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----EEEECSCSHHHHHHHHGGGSEETTEEEEEE
T ss_pred CeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----EEEEEcChHHHHHHHhcCCeeeCCeEEEEe
Confidence 58999988754 222 5689999999999999999773 999999999999999999999999999998
Q ss_pred eC
Q 023572 75 LA 76 (280)
Q Consensus 75 ~a 76 (280)
..
T Consensus 91 ~k 92 (95)
T 1ufw_A 91 GP 92 (95)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.37 E-value=7.5e-07 Score=77.01 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=55.6
Q ss_pred CCHHHHHHHcccCCceeEEEEeeCCC-------CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 15 ATERGIKEFFSFSGDIEYVEMKSDNE-------WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 15 tTE~dLkeFFS~cG~I~~I~l~~d~~-------~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
-.+++|++.|+.||+|.+|.+.++.. ..|++||+|.+.++|..|+ .|||..++||.|.|..++
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 46789999999999999999986531 2489999999999999999 599999999999999874
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.2e-06 Score=69.93 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=64.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccC-----CceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFS-----GDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLA 76 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~c-----G~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a 76 (280)
.|+|-+-|||..+++..|+.|...+ |.|..|-|.+| .+-|.|+|.|...|-.|. .|||.+|.|+.|.+...
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 5899999999999999999999999 99999999987 568999999999887776 69999999999999743
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=2.3e-05 Score=62.99 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=63.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHccc----C-CceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSF----S-GDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~----c-G~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a~ 77 (280)
+++|.|.|||+.+.++.|.-||.. . |+|.+|+... +.|+|+|.++..+++.|......|.+..|.|.++.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLAQADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCC
Confidence 578999999999999999999976 2 5999999864 68999999999999999888999999999999974
Q ss_pred C
Q 023572 78 D 78 (280)
Q Consensus 78 ~ 78 (280)
.
T Consensus 83 ~ 83 (104)
T 2dhx_A 83 P 83 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.77 E-value=0.00014 Score=59.69 Aligned_cols=71 Identities=14% Similarity=0.065 Sum_probs=60.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecC-eeEEEEeCC
Q 023572 3 IKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVD-LSVSISLAP 77 (280)
Q Consensus 3 ~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~g-r~I~V~~a~ 77 (280)
.+-|.|-+.++.. -..|.++|+.||+|.+.... .....-+|.|.++.+|+.||..||..|+| --|-|.++.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 4679999999996 67788899999999998872 33579999999999999999999999985 568888864
No 212
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.02 E-value=0.00071 Score=56.37 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=56.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeE-EEEeeC--------------CC--CCcEEEEEecChHHHHHHHhhcCCee
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEY-VEMKSD--------------NE--WTQIAYVTFKDMQGAETAVLLSGATI 66 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~-I~l~~d--------------~~--~~~~A~VtFed~~aA~tALlLnG~~L 66 (280)
.-|.|-+.|+.. ...|-++|+.||.|.. +.+.+. +. ....-.|+|+++.+|..||..||..|
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 468899996655 5567778999999866 332210 00 24578999999999999999999999
Q ss_pred cCeeEEEEeCC
Q 023572 67 VDLSVSISLAP 77 (280)
Q Consensus 67 ~gr~I~V~~a~ 77 (280)
+|.-|-|.|+.
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99999999883
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.89 E-value=0.0048 Score=49.40 Aligned_cols=71 Identities=8% Similarity=0.054 Sum_probs=61.6
Q ss_pred CeEEEeCCCCCC-C----HHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHH-hhcCCeecCeeEEEEeCC
Q 023572 4 KTVKVSNVSLGA-T----ERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSISLAP 77 (280)
Q Consensus 4 rTV~V~NIs~~t-T----E~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V~~a~ 77 (280)
.|++++||++.+ . .+.++++|..++++.+....++ .+-..|.|.++++|..|- .|+|..+.|..|+|.-++
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 689999998866 2 2577999999999999888865 467899999999999985 799999999999999876
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.82 E-value=0.0056 Score=47.67 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=56.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCC-----CCcEEEEEecChHHHHHHH-hhcCCeecCe
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNE-----WTQIAYVTFKDMQGAETAV-LLSGATIVDL 69 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~-----~~~~A~VtFed~~aA~tAL-lLnG~~L~gr 69 (280)
..|.|.+|||..||+++.+-++..+++.....+..+- ....|||.|.+++.+..-. .++|..+.|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 3799999999999999999999999988888876541 2479999999998887766 6999999765
No 215
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.17 E-value=0.0028 Score=62.35 Aligned_cols=61 Identities=15% Similarity=0.060 Sum_probs=46.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeec
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIV 67 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~ 67 (280)
|+|+|. .++..++.+|.++|+.+|+|.++-+..+. .-+|.|+|.+.+++..++...+....
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~~~~~p~~ 114 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQNGTHTPXX 114 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHSSCCCCCC
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHhccCCCcc
Confidence 789998 79999999999999999999999998764 37999999999999987755443333
No 216
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.44 E-value=0.069 Score=42.45 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=43.1
Q ss_pred EEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh
Q 023572 6 VKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL 60 (280)
Q Consensus 6 V~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl 60 (280)
|++-++|+.....||.+.|+.||- ..|+.+.| -.|||.|.+++.|..||.
T Consensus 18 Vf~l~FP~ewKt~DI~~lFs~fgg-v~I~WidD----TsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 18 VLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDD----TSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp EEEEECCTTCCHHHHHHHHTTTCS-CCCEEEET----TEEEEECSCHHHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHhhccCC-EEEEEEcC----CeEEEEecCHHHHHHHHH
Confidence 555599999999999999999994 46677766 489999999999999985
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.39 E-value=0.076 Score=42.28 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=43.4
Q ss_pred EEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh
Q 023572 6 VKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL 60 (280)
Q Consensus 6 V~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl 60 (280)
|++-++|+.....||.++|+.||- ..|+.+.| -.|||.|.+++.|..||.
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fgg-v~I~WidD----TsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDD----TSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEE-EEEEEEET----TEEEEEEEEECHHHHHHH
T ss_pred EEEEeCChhhhhHHHHHHHhccCC-EEEEEEcC----CeEEEEecCHHHHHHHHH
Confidence 555599999999999999999994 56777766 489999999999999985
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.35 E-value=0.045 Score=43.19 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=48.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCC-----CCCcEEEEEecChHHHHHHH-hhcCCeecCe
Q 023572 4 KTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDN-----EWTQIAYVTFKDMQGAETAV-LLSGATIVDL 69 (280)
Q Consensus 4 rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~-----~~~~~A~VtFed~~aA~tAL-lLnG~~L~gr 69 (280)
-.|.|.+|||..||+++.+-++.+=++.....+..+ .....|||.|.+++++..-. ..+|..+.|.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 369999999999999987766655444433333222 12468999999999988866 6999998765
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=84.01 E-value=0.85 Score=36.42 Aligned_cols=42 Identities=12% Similarity=-0.015 Sum_probs=29.7
Q ss_pred EEEEeeCCC-CCcEEEEEecChHHHHHHH-hhcCCeecCeeEEE
Q 023572 32 YVEMKSDNE-WTQIAYVTFKDMQGAETAV-LLSGATIVDLSVSI 73 (280)
Q Consensus 32 ~I~l~~d~~-~~~~A~VtFed~~aA~tAL-lLnG~~L~gr~I~V 73 (280)
++.|..++. ..|+|||+|.+++.|+.|+ .+++....+..+.+
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~ 45 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTY 45 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccc
Confidence 456666654 4689999999999999999 46665444444444
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=81.75 E-value=3.1 Score=40.83 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=42.3
Q ss_pred eEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHh-hc
Q 023572 5 TVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVL-LS 62 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALl-Ln 62 (280)
.++|+ +++.+...+|.+.|+.||. .+|+.+.+ ..|+|.|.+++.+..+|. ++
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd----t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD----TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS----SEEEEECSCHHHHHHHHHHHT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC----CeEEEEECCHHHHHHHHHHHH
Confidence 45555 8999999999999999995 46666544 579999999999999883 54
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=81.69 E-value=1 Score=35.84 Aligned_cols=35 Identities=11% Similarity=-0.038 Sum_probs=31.9
Q ss_pred CcEEEEEecChHHHHHHH-hh-cCCeecCeeEEEEeCC
Q 023572 42 TQIAYVTFKDMQGAETAV-LL-SGATIVDLSVSISLAP 77 (280)
Q Consensus 42 ~~~A~VtFed~~aA~tAL-lL-nG~~L~gr~I~V~~a~ 77 (280)
.|+++|+|.+++.|+.|+ .| ||..|+| .|.+..+.
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 689999999999999999 58 9999999 99998764
No 222
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=68.80 E-value=11 Score=32.47 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=41.8
Q ss_pred eEEEeCCCC-C--------CCHHHHHHHc--ccCCceeEEEEeeCCCCCcEEEEEec-ChHHHHHHHhhc
Q 023572 5 TVKVSNVSL-G--------ATERGIKEFF--SFSGDIEYVEMKSDNEWTQIAYVTFK-DMQGAETAVLLS 62 (280)
Q Consensus 5 TV~V~NIs~-~--------tTE~dLkeFF--S~cG~I~~I~l~~d~~~~~~A~VtFe-d~~aA~tALlLn 62 (280)
++.|-|++. . -+..+|++.| +.|..++-..+....+..++|.|.|. +..+...|+.|.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fe 83 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFD 83 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHHH
Confidence 578899997 2 3447899977 76766665555545566789999995 566788888654
No 223
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=47.44 E-value=34 Score=25.96 Aligned_cols=52 Identities=23% Similarity=0.136 Sum_probs=40.5
Q ss_pred eEEEeCCCCCCCHHHHHHHcc-cCC-ceeEEEEeeCCCCCcEEEEEecChHHHH
Q 023572 5 TVKVSNVSLGATERGIKEFFS-FSG-DIEYVEMKSDNEWTQIAYVTFKDMQGAE 56 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS-~cG-~I~~I~l~~d~~~~~~A~VtFed~~aA~ 56 (280)
..++-.+++.++..+|++.+. .|| +|..|.....+...+.|||++...+.+.
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~ 77 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSAS 77 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHH
Confidence 467778899999999998886 356 7888888776655689999997665443
No 224
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=41.26 E-value=6 Score=34.48 Aligned_cols=69 Identities=6% Similarity=-0.019 Sum_probs=47.1
Q ss_pred CCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecC---hHHH----HHHHhhcCCee---cCeeEEEEeCCCC
Q 023572 11 VSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKD---MQGA----ETAVLLSGATI---VDLSVSISLAPDY 79 (280)
Q Consensus 11 Is~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed---~~aA----~tALlLnG~~L---~gr~I~V~~a~~~ 79 (280)
++.+....+|++||..+|++..+.++-+++-.|.-.+.|.+ ...+ ...|..+|-.+ +|..+.|.+..+.
T Consensus 9 ~sl~f~~~~i~~vl~~la~~~g~n~vvd~~V~G~vtl~~~~~v~~~~~~~~l~~vL~~~gl~~~~~~g~v~~V~p~~~~ 87 (241)
T 3ezj_A 9 FTANFKDTDLKSFIETVGANLNKTIIMGPGVQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAA 87 (241)
T ss_dssp BCCEEEEEEHHHHHHHHHHHHTCEEEC---CCCEEEEEESSCBCHHHHHHHHHHHHHHTTEEEEEETTTEEEEEEC---
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCeEEECCCCcceEEEEeCCCCCHHHHHHHHHHHHHHCCcEEEEcCCCEEEEEEhHHh
Confidence 45566677899999999999999999887656666666754 3333 33456888765 5899999987543
No 225
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=34.75 E-value=67 Score=24.24 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=39.5
Q ss_pred eEEEeCCCCCCCHHHHHHHcc-cCC-ceeEEEEeeCCCCCcEEEEEecChHH
Q 023572 5 TVKVSNVSLGATERGIKEFFS-FSG-DIEYVEMKSDNEWTQIAYVTFKDMQG 54 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS-~cG-~I~~I~l~~d~~~~~~A~VtFed~~a 54 (280)
.-++-.+++.++.-+|++.+. .|| +|..|....-+...+.|||++...+.
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~ 74 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDD 74 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCc
Confidence 456778899999999998876 345 78888877766556899999987765
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=32.37 E-value=1.1e+02 Score=20.48 Aligned_cols=61 Identities=11% Similarity=0.060 Sum_probs=46.7
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCe
Q 023572 1 MSIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGAT 65 (280)
Q Consensus 1 Ms~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~ 65 (280)
|...++.|.|+.-.--...|...+.. --|..+.+-.. .+.+.|+|.+++.+..++.--|..
T Consensus 4 m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~---~~~~~v~~~~~~~i~~~i~~~Gy~ 64 (73)
T 3fry_A 4 VEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN---EAVVAGNKEDVDKYIKAVEAAGYQ 64 (73)
T ss_dssp CEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS---EEEEEEEGGGHHHHHHHHHHTTCE
T ss_pred cEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc---CCEEEEEECCHHHHHHHHHHcCCc
Confidence 44457899999998899999999988 77888887432 468889998667777777655543
No 227
>1cqt_I POU domain, class 2, associating factor 1; protein-DNA complex, OCT1, OCA-B, protein-DNA interface, gene regulation/DNA; HET: DNA; 3.20A {Homo sapiens}
Probab=25.26 E-value=26 Score=23.47 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=6.9
Q ss_pred CCCCCCCCCCCCCcCCCC
Q 023572 262 SSPSGHQPSKTEPAQGLV 279 (280)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~ 279 (280)
+++++|+|..+.|-||..
T Consensus 6 ~~a~~q~~~p~rPYqGVR 23 (44)
T 1cqt_I 6 PTAPEQAPAPARPYQGVR 23 (44)
T ss_dssp ----------CCCCCSCC
T ss_pred cCCccccCCCCCCcccee
Confidence 456778888889999975
No 228
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=24.44 E-value=89 Score=25.92 Aligned_cols=55 Identities=24% Similarity=0.185 Sum_probs=41.4
Q ss_pred eEEEeCCCCCCCHHHHHHHcc-cCC-ceeEEEEeeCCCCCcEEEEEecChH-HHHHHH
Q 023572 5 TVKVSNVSLGATERGIKEFFS-FSG-DIEYVEMKSDNEWTQIAYVTFKDMQ-GAETAV 59 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS-~cG-~I~~I~l~~d~~~~~~A~VtFed~~-aA~tAL 59 (280)
.-+|-.++..++.-+|++.+. .|| +|..|..+...+..+-|||++...+ +.+-|-
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHH
Confidence 356777889999999997775 345 7888888776666789999997664 455454
No 229
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=23.61 E-value=91 Score=26.11 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=41.1
Q ss_pred eEEEeCCCCCCCHHHHHHHcc-cCC-ceeEEEEeeCCCCCcEEEEEecChH-HHHHHH
Q 023572 5 TVKVSNVSLGATERGIKEFFS-FSG-DIEYVEMKSDNEWTQIAYVTFKDMQ-GAETAV 59 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS-~cG-~I~~I~l~~d~~~~~~A~VtFed~~-aA~tAL 59 (280)
.-+|--++..++.-+|++.+. .|| +|..|..+..++..+-|||++...+ +.+-|-
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 456777889999999997775 345 7888888776666789999997654 444453
No 230
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=22.47 E-value=1e+02 Score=22.40 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=25.8
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEec
Q 023572 1 MSIKTVKVSNVSLGATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFK 50 (280)
Q Consensus 1 Ms~rTV~V~NIs~~tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFe 50 (280)
|.|.+|.|.|...- |+.|||-|.+|. .+.|-|-|+
T Consensus 3 lPG~~V~V~np~~~--------Yy~y~G~VQRvs-------dgkaaVLFE 37 (66)
T 2jz2_A 3 FPGATVRVTNVDDT--------YYRFEGLVQRVS-------DGKAAVLFE 37 (66)
T ss_dssp CTTCEEEECCTTST--------TBTCEEEEEEEE-------TTEEEEEEE
T ss_pred cCCCEEEEeCCCCc--------ccceeEEEEEec-------CCcEEEEec
Confidence 56889999997653 689999998875 245556555
No 231
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=22.39 E-value=98 Score=21.61 Aligned_cols=58 Identities=12% Similarity=0.179 Sum_probs=37.6
Q ss_pred CCCHHHHHHHcccCC-----ceeEEEEeeCCCCCcEEEEEecChHHHHHHHhhcCCeecCeeEEEEeC
Q 023572 14 GATERGIKEFFSFSG-----DIEYVEMKSDNEWTQIAYVTFKDMQGAETAVLLSGATIVDLSVSISLA 76 (280)
Q Consensus 14 ~tTE~dLkeFFS~cG-----~I~~I~l~~d~~~~~~A~VtFed~~aA~tALlLnG~~L~gr~I~V~~a 76 (280)
.+...+|..++..-| .|-.|++.. .+.||+-....+-...-.|++..+.|+.+.|+.+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-----~~s~v~v~~~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD-----NASYVEILNGKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS-----SCEEEEECTTCHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC-----CcEEEEECHHHHHHHHHHhccccCcCceEEEEEC
Confidence 567778888887444 466777753 4888888776544444479999999999999875
No 232
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=21.85 E-value=52 Score=26.25 Aligned_cols=62 Identities=8% Similarity=0.065 Sum_probs=44.3
Q ss_pred CCHHHHHHHcccCCceeEEEEeeCCCCCcEEEEEecChH---HHHHHHhhcCC--eecCeeEEEEeC
Q 023572 15 ATERGIKEFFSFSGDIEYVEMKSDNEWTQIAYVTFKDMQ---GAETAVLLSGA--TIVDLSVSISLA 76 (280)
Q Consensus 15 tTE~dLkeFFS~cG~I~~I~l~~d~~~~~~A~VtFed~~---aA~tALlLnG~--~L~gr~I~V~~a 76 (280)
...-+|+++|...+++..+.++-+++-.|.-.+.+.+.. +....|..+|- ...|+.|.|.+.
T Consensus 38 f~da~i~~vl~~la~~tg~NiV~d~~V~G~VTl~l~~v~~~~al~~iL~~~gl~~~~~gnvi~I~p~ 104 (128)
T 4ar0_A 38 FQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPR 104 (128)
T ss_dssp EEEEEHHHHHHHHHHTTCCEEEECTTCCCEEEEEEEEEEHHHHHHHHHHHHTEEEEEETTEEEEEEH
T ss_pred EeCCCHHHHHHHHHHHHCCcEEEcCCCCceeeEeecCCCHHHHHHHHHHHcCceEEEECCEEEEECh
Confidence 344568999999999999999988866677777777642 33333446664 457888999875
No 233
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.07 E-value=1.5e+02 Score=24.97 Aligned_cols=54 Identities=20% Similarity=0.171 Sum_probs=41.3
Q ss_pred eEEEeCCCCCCCHHHHHHHcc-cCC-ceeEEEEeeCCCCCcEEEEEecChHH-HHHH
Q 023572 5 TVKVSNVSLGATERGIKEFFS-FSG-DIEYVEMKSDNEWTQIAYVTFKDMQG-AETA 58 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS-~cG-~I~~I~l~~d~~~~~~A~VtFed~~a-A~tA 58 (280)
..+|-.+++.++.-+|++.+. .|| +|..|..+.-.+..+-|||++...+. .+-+
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~ 150 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHH
Confidence 356777899999999998876 345 78888887766667899999987654 4433
No 234
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=20.34 E-value=96 Score=26.03 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=40.2
Q ss_pred eEEEeCCCCCCCHHHHHHHcc-cCC-ceeEEEEeeCCCCCcEEEEEecChH-HHHHH
Q 023572 5 TVKVSNVSLGATERGIKEFFS-FSG-DIEYVEMKSDNEWTQIAYVTFKDMQ-GAETA 58 (280)
Q Consensus 5 TV~V~NIs~~tTE~dLkeFFS-~cG-~I~~I~l~~d~~~~~~A~VtFed~~-aA~tA 58 (280)
..+|-.++..++.-+|++.+. .|| +|..|..+..++..+-|||++...+ +.+-|
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvA 146 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVA 146 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHH
Confidence 356777889999999997775 345 7888887766666789999997664 44444
Done!