Query 023574
Match_columns 280
No_of_seqs 73 out of 75
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 09:09:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f2g_A Alkylmercury lyase; MER 95.6 0.013 4.4E-07 52.5 5.1 56 80-142 20-75 (220)
2 3i71_A Ethanolamine utilizatio 95.3 0.027 9.2E-07 42.2 5.2 40 85-124 6-45 (68)
3 2heo_A Z-DNA binding protein 1 95.3 0.048 1.6E-06 39.2 6.4 51 83-135 11-61 (67)
4 2jt1_A PEFI protein; solution 94.8 0.052 1.8E-06 40.9 5.7 43 82-124 4-51 (77)
5 2lnb_A Z-DNA-binding protein 1 94.0 0.095 3.2E-06 40.8 5.5 44 82-125 19-62 (80)
6 3r0a_A Putative transcriptiona 93.3 0.77 2.6E-05 35.9 9.9 84 82-169 26-115 (123)
7 1q1h_A TFE, transcription fact 92.2 0.39 1.3E-05 36.2 6.6 57 82-140 18-79 (110)
8 3cuq_B Vacuolar protein-sortin 91.5 0.55 1.9E-05 41.4 7.6 69 74-145 145-214 (218)
9 1qbj_A Protein (double-strande 90.7 0.28 9.7E-06 37.1 4.3 45 80-124 8-54 (81)
10 1xmk_A Double-stranded RNA-spe 90.4 0.33 1.1E-05 36.9 4.6 58 81-141 10-68 (79)
11 2htj_A P fimbrial regulatory p 90.1 0.49 1.7E-05 34.2 5.1 45 84-131 2-46 (81)
12 2fu4_A Ferric uptake regulatio 89.6 0.81 2.8E-05 32.8 5.9 60 81-140 16-81 (83)
13 1qgp_A Protein (double strande 89.4 0.43 1.5E-05 35.3 4.4 45 80-124 12-58 (77)
14 3cuq_A Vacuolar-sorting protei 89.3 0.69 2.4E-05 41.7 6.5 69 73-145 144-216 (234)
15 1u5t_A Appears to BE functiona 88.5 0.47 1.6E-05 42.8 4.8 59 84-145 169-229 (233)
16 3cuo_A Uncharacterized HTH-typ 87.1 1.4 4.8E-05 31.7 5.8 59 80-141 22-81 (99)
17 2oqg_A Possible transcriptiona 87.0 6.3 0.00022 29.0 9.6 59 79-141 18-77 (114)
18 3f6o_A Probable transcriptiona 86.9 4.4 0.00015 31.0 8.9 59 79-141 15-74 (118)
19 2xvc_A ESCRT-III, SSO0910; cel 86.4 1.2 4.2E-05 32.8 5.1 46 80-125 8-53 (59)
20 1y0u_A Arsenical resistance op 86.4 1.4 4.6E-05 32.5 5.5 54 80-141 29-82 (96)
21 1oyi_A Double-stranded RNA-bin 86.0 0.95 3.3E-05 34.8 4.6 42 81-124 16-57 (82)
22 3jth_A Transcription activator 85.3 1.3 4.6E-05 32.4 5.0 58 80-141 21-79 (98)
23 1r1u_A CZRA, repressor protein 84.9 2.3 7.9E-05 31.9 6.2 59 79-141 23-81 (106)
24 3f6v_A Possible transcriptiona 84.2 2.8 9.5E-05 34.3 6.9 59 79-141 55-113 (151)
25 1xn7_A Hypothetical protein YH 83.9 1.6 5.5E-05 32.7 4.9 42 83-125 3-44 (78)
26 2k02_A Ferrous iron transport 83.7 1.5 5.3E-05 33.8 4.9 42 83-125 3-44 (87)
27 2kko_A Possible transcriptiona 83.3 2.1 7.3E-05 32.4 5.5 57 81-141 24-80 (108)
28 1sfx_A Conserved hypothetical 82.4 11 0.00037 26.8 9.8 57 82-141 20-78 (109)
29 2l0k_A Stage III sporulation p 81.1 1.4 4.9E-05 34.1 3.8 38 80-119 5-42 (93)
30 2v9v_A Selenocysteine-specific 80.2 14 0.00047 28.4 9.3 61 83-145 3-63 (135)
31 3h5t_A Transcriptional regulat 80.0 3.6 0.00012 36.0 6.4 75 92-166 4-100 (366)
32 3b73_A PHIH1 repressor-like pr 78.9 5.3 0.00018 31.6 6.6 63 82-149 13-77 (111)
33 3pqk_A Biofilm growth-associat 76.4 3.3 0.00011 30.5 4.5 59 79-141 20-79 (102)
34 2jsc_A Transcriptional regulat 76.3 5.1 0.00018 30.8 5.7 58 80-141 19-76 (118)
35 3vp5_A Transcriptional regulat 75.9 2.1 7.1E-05 33.9 3.4 36 77-112 7-47 (189)
36 1u5t_B Defective in vacuolar p 75.8 4.3 0.00015 34.5 5.5 61 77-140 93-162 (169)
37 2zkz_A Transcriptional repress 75.5 6 0.00021 29.4 5.7 59 79-141 24-82 (99)
38 2p5k_A Arginine repressor; DNA 74.8 11 0.00039 25.1 6.6 53 83-140 5-63 (64)
39 2cyy_A Putative HTH-type trans 74.6 5 0.00017 31.7 5.3 42 82-124 7-48 (151)
40 1r1t_A Transcriptional repress 74.3 5.9 0.0002 30.9 5.6 57 81-141 45-101 (122)
41 1ub9_A Hypothetical protein PH 74.0 21 0.00071 25.3 8.7 58 80-140 14-74 (100)
42 2o03_A Probable zinc uptake re 73.4 13 0.00044 29.1 7.5 61 81-141 10-75 (131)
43 2lkp_A Transcriptional regulat 73.4 15 0.00053 27.4 7.6 58 82-143 32-89 (119)
44 2x4h_A Hypothetical protein SS 73.3 28 0.00095 26.4 9.5 47 85-133 16-65 (139)
45 2d1h_A ST1889, 109AA long hypo 73.2 7.5 0.00026 27.7 5.6 47 84-132 23-69 (109)
46 2dk8_A DNA-directed RNA polyme 72.7 14 0.00048 28.3 7.2 60 80-141 12-73 (81)
47 2kif_A O6-methylguanine-DNA me 72.5 5.5 0.00019 31.8 5.1 57 82-138 3-65 (108)
48 2dbb_A Putative HTH-type trans 72.2 6.5 0.00022 30.9 5.5 42 82-124 9-50 (151)
49 2w25_A Probable transcriptiona 71.9 6.3 0.00021 31.0 5.3 42 82-124 7-48 (150)
50 1u2w_A CADC repressor, cadmium 71.8 6.1 0.00021 30.5 5.1 58 81-141 41-99 (122)
51 2e1c_A Putative HTH-type trans 71.5 6 0.00021 32.6 5.3 42 82-124 27-68 (171)
52 2pn6_A ST1022, 150AA long hypo 70.9 5 0.00017 31.4 4.5 42 82-124 3-44 (150)
53 2cfx_A HTH-type transcriptiona 69.6 7.7 0.00026 30.4 5.3 42 82-124 5-46 (144)
54 1p6r_A Penicillinase repressor 69.5 13 0.00044 26.3 6.1 55 82-139 9-67 (82)
55 2cg4_A Regulatory protein ASNC 69.3 7.5 0.00026 30.6 5.2 42 82-124 8-49 (152)
56 1sfu_A 34L protein; protein/Z- 69.0 9.9 0.00034 28.9 5.6 53 80-134 10-64 (75)
57 1i1g_A Transcriptional regulat 68.8 7.6 0.00026 29.9 5.1 41 83-124 5-45 (141)
58 3kkc_A TETR family transcripti 68.2 3.8 0.00013 31.1 3.2 31 82-112 12-47 (177)
59 2qwt_A Transcriptional regulat 68.0 4 0.00014 32.2 3.4 31 83-113 14-48 (196)
60 2o0y_A Transcriptional regulat 67.8 5.8 0.0002 34.5 4.7 53 85-141 23-78 (260)
61 4hku_A LMO2814 protein, TETR t 67.7 2.6 9.1E-05 32.9 2.2 30 82-111 7-41 (178)
62 4a6d_A Hydroxyindole O-methylt 67.3 12 0.0004 33.7 6.7 68 74-143 20-88 (353)
63 2ia0_A Putative HTH-type trans 67.3 8.4 0.00029 31.6 5.3 42 82-124 17-58 (171)
64 2p5v_A Transcriptional regulat 67.2 9 0.00031 30.6 5.4 42 82-124 10-51 (162)
65 4a0z_A Transcription factor FA 66.8 6.7 0.00023 33.5 4.7 40 83-123 13-52 (190)
66 2fe3_A Peroxide operon regulat 66.2 18 0.0006 28.9 6.9 61 81-141 21-86 (145)
67 1mkm_A ICLR transcriptional re 66.1 36 0.0012 29.1 9.3 53 85-141 11-63 (249)
68 2eh3_A Transcriptional regulat 65.7 3.9 0.00013 31.5 2.8 32 82-113 2-38 (179)
69 3i4p_A Transcriptional regulat 65.7 7.4 0.00025 31.4 4.6 43 82-125 3-45 (162)
70 2q24_A Putative TETR family tr 65.7 4.7 0.00016 31.4 3.3 29 86-114 23-51 (194)
71 2gmg_A Hypothetical protein PF 65.6 6.1 0.00021 31.9 4.0 51 81-133 10-67 (105)
72 3ppb_A Putative TETR family tr 65.1 4.7 0.00016 30.7 3.1 32 82-113 9-45 (195)
73 3mq0_A Transcriptional repress 65.1 5.5 0.00019 35.1 4.0 52 86-141 34-85 (275)
74 3mwm_A ZUR, putative metal upt 64.2 23 0.0008 28.1 7.2 60 82-141 14-78 (139)
75 3k2z_A LEXA repressor; winged 64.1 7.9 0.00027 32.1 4.6 40 85-124 12-51 (196)
76 2zcm_A Biofilm operon icaabcd 62.9 4.9 0.00017 31.2 2.9 32 82-113 11-43 (192)
77 3vpr_A Transcriptional regulat 62.6 4.9 0.00017 31.2 2.9 32 83-114 4-40 (190)
78 3bdd_A Regulatory protein MARR 62.4 44 0.0015 24.7 8.1 47 83-132 32-78 (142)
79 2xrn_A HTH-type transcriptiona 62.4 9.5 0.00032 32.7 4.9 53 86-141 10-62 (241)
80 2pij_A Prophage PFL 6 CRO; tra 62.0 17 0.00057 24.4 5.2 50 86-141 5-54 (67)
81 3jsj_A Putative TETR-family tr 61.3 6 0.0002 30.5 3.1 33 81-113 8-44 (190)
82 3gzi_A Transcriptional regulat 61.2 5.5 0.00019 31.2 3.0 33 81-113 16-53 (218)
83 2y75_A HTH-type transcriptiona 61.1 13 0.00045 28.5 5.1 45 86-132 13-59 (129)
84 1w7p_D VPS36P, YLR417W; ESCRT- 60.7 11 0.00036 38.0 5.5 62 81-145 493-561 (566)
85 3nnr_A Transcriptional regulat 60.3 4.9 0.00017 32.1 2.6 34 80-113 3-41 (228)
86 2k9l_A RNA polymerase sigma fa 59.9 7.3 0.00025 28.6 3.2 41 82-122 32-73 (76)
87 2rek_A Putative TETR-family tr 59.7 5.1 0.00017 31.2 2.5 31 83-113 17-51 (199)
88 3tgn_A ADC operon repressor AD 59.2 13 0.00043 28.1 4.6 40 83-124 39-78 (146)
89 3qkx_A Uncharacterized HTH-typ 59.1 7.6 0.00026 29.4 3.4 32 82-113 8-44 (188)
90 2nnn_A Probable transcriptiona 58.8 51 0.0018 24.2 9.5 46 83-131 39-84 (140)
91 3f1b_A TETR-like transcription 58.8 7.4 0.00025 29.9 3.2 31 83-113 15-50 (203)
92 1lva_A Selenocysteine-specific 58.2 53 0.0018 28.6 9.1 55 84-139 4-58 (258)
93 2dk5_A DNA-directed RNA polyme 58.1 19 0.00065 27.3 5.4 46 83-130 21-67 (91)
94 1j5y_A Transcriptional regulat 57.9 16 0.00054 30.2 5.3 47 84-131 23-69 (187)
95 3dew_A Transcriptional regulat 57.7 6.7 0.00023 30.0 2.8 33 82-114 8-45 (206)
96 2xub_A DNA-directed RNA polyme 57.7 42 0.0014 32.6 9.0 63 85-150 22-84 (534)
97 1jhf_A LEXA repressor; LEXA SO 57.6 20 0.00069 29.4 5.9 49 82-132 10-59 (202)
98 3he0_A Transcriptional regulat 57.6 7.5 0.00026 29.8 3.1 28 86-113 19-47 (196)
99 1z91_A Organic hydroperoxide r 57.2 29 0.001 26.0 6.4 46 83-131 41-86 (147)
100 3lhq_A Acrab operon repressor 57.2 7.7 0.00026 30.0 3.1 31 83-113 15-50 (220)
101 1mzb_A Ferric uptake regulatio 56.8 30 0.001 27.2 6.6 61 81-141 17-83 (136)
102 3fm5_A Transcriptional regulat 56.2 15 0.00051 28.1 4.6 47 83-131 40-86 (150)
103 2xig_A Ferric uptake regulatio 56.1 37 0.0013 27.3 7.1 62 80-141 25-91 (150)
104 1ku9_A Hypothetical protein MJ 56.1 59 0.002 24.0 10.2 60 83-144 27-89 (152)
105 3mkl_A HTH-type transcriptiona 55.8 16 0.00055 27.6 4.7 42 77-118 2-44 (120)
106 3lwj_A Putative TETR-family tr 55.6 8.5 0.00029 29.7 3.1 32 81-112 11-47 (202)
107 2fd5_A Transcriptional regulat 55.6 8.5 0.00029 29.4 3.1 30 82-111 7-41 (180)
108 3deu_A Transcriptional regulat 55.5 18 0.00063 28.6 5.2 48 83-132 54-101 (166)
109 3kz9_A SMCR; transcriptional r 55.5 9.5 0.00032 29.2 3.4 32 82-113 17-53 (206)
110 3to7_A Histone acetyltransfera 55.4 11 0.00037 35.0 4.3 40 84-123 195-234 (276)
111 2gxg_A 146AA long hypothetical 55.2 62 0.0021 24.0 9.7 46 83-132 38-83 (146)
112 2fbh_A Transcriptional regulat 55.0 62 0.0021 24.0 9.5 47 83-131 38-84 (146)
113 3col_A Putative transcription 54.8 7.9 0.00027 29.4 2.8 32 82-113 10-46 (196)
114 2g7u_A Transcriptional regulat 54.7 21 0.00071 30.8 5.8 48 83-132 12-62 (257)
115 2pg4_A Uncharacterized protein 54.6 13 0.00045 26.9 3.9 44 86-131 19-63 (95)
116 3bro_A Transcriptional regulat 54.6 62 0.0021 23.9 9.4 43 83-125 35-78 (141)
117 1sgm_A Putative HTH-type trans 54.5 8.8 0.0003 29.1 3.0 26 86-111 14-40 (191)
118 3r4k_A Transcriptional regulat 54.4 5.2 0.00018 34.9 1.9 51 87-141 11-62 (260)
119 2l01_A Uncharacterized protein 54.0 30 0.001 26.5 5.8 54 86-142 14-68 (77)
120 2vxz_A Pyrsv_GP04; viral prote 53.7 63 0.0022 28.0 8.4 77 82-169 11-87 (165)
121 3nxc_A HTH-type protein SLMA; 53.7 5.7 0.00019 30.9 1.8 33 81-113 23-61 (212)
122 2hr3_A Probable transcriptiona 53.7 67 0.0023 24.0 8.9 46 84-131 37-82 (147)
123 2fa5_A Transcriptional regulat 53.6 68 0.0023 24.4 8.1 47 83-132 50-96 (162)
124 3dp7_A SAM-dependent methyltra 53.6 12 0.00041 33.5 4.2 61 79-144 32-92 (363)
125 3mvp_A TETR/ACRR transcription 53.5 8.4 0.00029 29.9 2.8 33 81-113 25-62 (217)
126 1mgt_A MGMT, protein (O6-methy 53.4 11 0.00036 32.5 3.6 55 81-135 90-149 (174)
127 3f0c_A TETR-molecule A, transc 53.3 9.6 0.00033 29.7 3.1 33 81-113 10-47 (216)
128 2iu5_A DHAS, YCEG, HTH-type dh 53.3 8.6 0.00029 30.0 2.8 30 82-111 13-47 (195)
129 3dpj_A Transcription regulator 53.2 9.9 0.00034 29.2 3.1 32 82-113 8-44 (194)
130 2eth_A Transcriptional regulat 53.0 73 0.0025 24.3 10.1 46 83-131 45-90 (154)
131 1t33_A Putative transcriptiona 53.0 7.2 0.00025 30.8 2.4 32 82-113 12-47 (224)
132 2l02_A Uncharacterized protein 52.8 39 0.0013 26.1 6.4 55 86-143 12-66 (82)
133 3s5r_A Transcriptional regulat 52.3 11 0.00037 29.3 3.3 32 82-113 10-46 (216)
134 3dcf_A Transcriptional regulat 52.1 11 0.00039 29.1 3.4 34 81-114 30-68 (218)
135 3him_A Probable transcriptiona 52.0 10 0.00036 29.1 3.1 32 80-111 14-50 (211)
136 2id6_A Transcriptional regulat 52.0 5.3 0.00018 31.5 1.4 34 79-112 2-40 (202)
137 3rd3_A Probable transcriptiona 51.8 11 0.00037 28.8 3.1 32 82-113 10-46 (197)
138 3i53_A O-methyltransferase; CO 51.7 13 0.00043 32.5 4.0 59 73-135 16-74 (332)
139 1r7j_A Conserved hypothetical 51.6 13 0.00046 28.0 3.6 51 84-137 10-65 (95)
140 3knw_A Putative transcriptiona 51.4 11 0.00037 29.2 3.1 33 81-113 13-50 (212)
141 3nrv_A Putative transcriptiona 51.3 27 0.00092 26.3 5.3 47 83-132 41-87 (148)
142 2yve_A Transcriptional regulat 51.3 12 0.00041 29.2 3.4 28 86-113 12-40 (185)
143 2qtq_A Transcriptional regulat 51.2 11 0.00038 29.1 3.1 33 81-113 15-52 (213)
144 2zb9_A Putative transcriptiona 51.2 9.7 0.00033 30.0 2.9 31 83-113 24-59 (214)
145 3f3x_A Transcriptional regulat 51.0 75 0.0026 23.8 8.8 46 83-132 38-83 (144)
146 3cdh_A Transcriptional regulat 50.8 68 0.0023 24.3 7.6 46 83-131 44-89 (155)
147 2fbi_A Probable transcriptiona 50.7 72 0.0025 23.5 9.8 42 83-125 37-78 (142)
148 2dg7_A Putative transcriptiona 50.7 12 0.0004 29.0 3.2 33 81-113 6-43 (195)
149 3rh2_A Hypothetical TETR-like 50.6 10 0.00034 29.8 2.8 32 82-113 3-39 (212)
150 2vn2_A DNAD, chromosome replic 50.5 42 0.0014 26.2 6.5 51 96-146 50-104 (128)
151 3kjx_A Transcriptional regulat 50.5 6.1 0.00021 34.2 1.7 71 92-167 5-96 (344)
152 3on4_A Transcriptional regulat 50.5 10 0.00036 28.7 2.8 31 82-112 10-45 (191)
153 3on2_A Probable transcriptiona 50.4 9.2 0.00032 29.1 2.5 32 81-112 11-47 (199)
154 3qqa_A CMER; alpha-helical, he 50.3 11 0.00039 29.2 3.1 29 83-111 20-53 (216)
155 3egq_A TETR family transcripti 50.3 8.4 0.00029 29.2 2.3 32 82-113 4-40 (170)
156 3q0w_A HTH-type transcriptiona 50.2 11 0.00037 30.6 3.1 33 81-113 43-80 (236)
157 2xzm_8 RPS25E,; ribosome, tran 50.2 16 0.00055 31.0 4.2 63 79-141 45-107 (143)
158 1bia_A BIRA bifunctional prote 49.9 31 0.0011 31.0 6.3 57 82-142 5-61 (321)
159 2dg8_A Putative TETR-family tr 49.9 9.6 0.00033 29.7 2.6 31 82-112 9-44 (193)
160 3bru_A Regulatory protein, TET 49.9 13 0.00044 29.1 3.4 32 81-112 29-65 (222)
161 1tc3_C Protein (TC3 transposas 49.8 36 0.0012 20.4 4.9 40 78-120 5-44 (51)
162 2rae_A Transcriptional regulat 49.6 12 0.00042 29.0 3.2 32 81-112 16-52 (207)
163 3bqz_B HTH-type transcriptiona 49.5 13 0.00045 28.3 3.3 32 82-113 2-38 (194)
164 3nrg_A TETR family transcripti 49.4 11 0.00038 29.3 2.9 34 78-111 9-47 (217)
165 1s3j_A YUSO protein; structura 49.3 82 0.0028 23.7 9.9 47 83-132 38-84 (155)
166 3o60_A LIN0861 protein; PSI, M 49.2 8.7 0.0003 30.8 2.3 32 81-112 18-55 (185)
167 2w57_A Ferric uptake regulatio 49.1 41 0.0014 27.0 6.4 61 81-141 16-82 (150)
168 1neq_A DNA-binding protein NER 49.1 11 0.00039 27.2 2.7 34 80-116 8-41 (74)
169 3g3z_A NMB1585, transcriptiona 49.0 24 0.00081 26.6 4.7 46 83-131 32-77 (145)
170 1bja_A Transcription regulator 48.9 26 0.0009 27.4 5.0 44 84-130 18-62 (95)
171 2ia2_A Putative transcriptiona 48.9 28 0.00094 30.2 5.6 47 84-132 20-69 (265)
172 3e3m_A Transcriptional regulat 48.9 9.7 0.00033 33.2 2.7 27 93-119 8-34 (355)
173 3b81_A Transcriptional regulat 48.5 13 0.00044 28.6 3.1 32 81-112 10-46 (203)
174 1pb6_A Hypothetical transcript 48.5 13 0.00046 28.7 3.2 34 80-113 16-54 (212)
175 3e7q_A Transcriptional regulat 48.5 5.7 0.00019 30.7 1.1 33 81-113 13-50 (215)
176 1wi9_A Protein C20ORF116 homol 48.5 35 0.0012 25.8 5.4 60 85-145 10-69 (72)
177 2d6y_A Putative TETR family re 48.4 13 0.00043 29.5 3.1 32 82-113 8-44 (202)
178 1zk8_A Transcriptional regulat 48.4 11 0.00039 28.7 2.8 30 83-112 9-43 (183)
179 2bv6_A MGRA, HTH-type transcri 48.3 33 0.0011 25.7 5.3 48 83-133 38-85 (142)
180 2fq4_A Transcriptional regulat 48.2 13 0.00045 29.0 3.1 34 81-114 11-49 (192)
181 3cwr_A Transcriptional regulat 48.0 12 0.00041 28.7 2.8 33 81-113 16-53 (208)
182 2guh_A Putative TETR-family tr 48.0 12 0.00041 30.2 3.0 32 82-113 39-75 (214)
183 3eyy_A Putative iron uptake re 47.8 56 0.0019 26.0 6.9 60 81-141 18-82 (145)
184 1t6s_A Conserved hypothetical 47.6 39 0.0013 28.5 6.2 51 90-141 15-70 (162)
185 1rkt_A Protein YFIR; transcrip 47.6 11 0.00038 29.6 2.7 31 82-112 12-47 (205)
186 4aci_A HTH-type transcriptiona 47.6 7 0.00024 30.0 1.4 32 82-113 14-50 (191)
187 3boq_A Transcriptional regulat 47.6 84 0.0029 23.9 7.7 48 83-132 48-95 (160)
188 2qww_A Transcriptional regulat 47.5 39 0.0013 25.6 5.7 46 83-131 42-87 (154)
189 2oer_A Probable transcriptiona 47.5 13 0.00045 29.6 3.1 32 82-113 24-60 (214)
190 1uly_A Hypothetical protein PH 47.3 24 0.00082 29.7 4.9 47 82-132 20-66 (192)
191 3anp_C Transcriptional repress 47.2 12 0.0004 29.4 2.7 31 82-112 9-44 (204)
192 2g7s_A Transcriptional regulat 47.1 13 0.00044 28.2 2.9 32 82-113 8-44 (194)
193 2h09_A Transcriptional regulat 47.0 97 0.0033 23.9 9.1 55 85-143 43-97 (155)
194 1zg3_A Isoflavanone 4'-O-methy 46.8 24 0.00083 31.2 5.0 58 73-132 21-81 (358)
195 3frq_A Repressor protein MPHR( 46.7 7.3 0.00025 30.2 1.4 30 84-113 10-44 (195)
196 3bj6_A Transcriptional regulat 46.6 90 0.0031 23.4 9.8 46 83-131 41-86 (152)
197 1vi0_A Transcriptional regulat 46.6 10 0.00036 30.1 2.4 32 82-113 8-44 (206)
198 3qbm_A TETR transcriptional re 46.6 14 0.00049 28.1 3.1 27 87-113 16-43 (199)
199 2v79_A DNA replication protein 46.6 43 0.0015 26.9 6.1 60 88-147 42-105 (135)
200 3cdl_A Transcriptional regulat 46.5 13 0.00044 29.3 2.9 35 79-113 6-45 (203)
201 3hta_A EBRA repressor; TETR fa 46.4 12 0.00042 30.0 2.8 31 83-113 29-64 (217)
202 1wrj_A Methylated-DNA--protein 46.2 12 0.00042 31.5 2.8 56 81-137 70-129 (156)
203 1on2_A Transcriptional regulat 46.0 95 0.0032 23.5 9.0 37 95-133 20-56 (142)
204 2rdp_A Putative transcriptiona 45.9 91 0.0031 23.3 10.0 46 83-131 43-88 (150)
205 2qko_A Possible transcriptiona 45.7 15 0.00053 28.9 3.2 31 82-112 28-63 (215)
206 3bhq_A Transcriptional regulat 45.7 13 0.00043 29.4 2.7 33 81-113 11-48 (211)
207 3vib_A MTRR; helix-turn-helix 45.7 13 0.00043 29.3 2.7 33 81-113 9-46 (210)
208 2hsg_A Glucose-resistance amyl 45.4 11 0.00037 32.3 2.4 23 97-119 2-24 (332)
209 2ibd_A Possible transcriptiona 45.3 14 0.00046 29.1 2.8 32 82-113 14-50 (204)
210 3g7r_A Putative transcriptiona 45.0 15 0.0005 29.5 3.0 33 81-113 34-71 (221)
211 3bni_A Putative TETR-family tr 44.9 15 0.00052 29.6 3.1 31 82-112 43-78 (229)
212 2b0l_A GTP-sensing transcripti 44.5 8.7 0.0003 29.5 1.6 47 84-133 30-77 (102)
213 1fp2_A Isoflavone O-methyltran 43.9 43 0.0015 29.5 6.2 68 73-142 27-97 (352)
214 2nyx_A Probable transcriptiona 43.8 1.1E+02 0.0039 23.7 10.1 46 83-131 46-91 (168)
215 2qib_A TETR-family transcripti 43.5 16 0.00054 29.6 3.0 32 82-113 13-49 (231)
216 3txn_A 26S proteasome regulato 43.4 69 0.0024 30.2 7.8 66 82-147 301-366 (394)
217 2f07_A YVDT; helix-turn-helix, 43.1 15 0.0005 28.9 2.7 32 81-112 9-45 (197)
218 3aqt_A Bacterial regulatory pr 42.8 15 0.0005 30.2 2.8 31 81-111 45-80 (245)
219 2np5_A Transcriptional regulat 42.6 14 0.00046 29.2 2.5 31 83-113 10-45 (203)
220 2pex_A Transcriptional regulat 42.3 51 0.0017 25.0 5.7 41 83-124 48-88 (153)
221 2id3_A Putative transcriptiona 42.3 16 0.00054 29.5 2.8 32 82-113 40-76 (225)
222 2gen_A Probable transcriptiona 42.3 16 0.00054 28.7 2.8 27 87-113 16-43 (197)
223 1uxc_A FRUR (1-57), fructose r 42.3 15 0.00051 26.2 2.4 22 98-119 1-22 (65)
224 3mnl_A KSTR, transcriptional r 42.2 9.4 0.00032 29.4 1.4 32 82-113 20-56 (203)
225 2xdn_A HTH-type transcriptiona 42.2 14 0.0005 28.9 2.6 31 82-112 11-46 (210)
226 3bja_A Transcriptional regulat 42.1 99 0.0034 22.6 8.5 46 83-131 34-79 (139)
227 3g1o_A Transcriptional regulat 42.1 13 0.00044 30.5 2.3 33 81-113 42-79 (255)
228 3ccy_A Putative TETR-family tr 41.9 17 0.00057 28.4 2.9 30 82-111 14-48 (203)
229 3la7_A Global nitrogen regulat 41.7 51 0.0017 27.0 6.0 29 96-124 192-220 (243)
230 1ui5_A A-factor receptor homol 41.7 16 0.00054 29.3 2.8 32 82-113 9-45 (215)
231 2a61_A Transcriptional regulat 41.5 1E+02 0.0036 22.7 9.5 47 83-132 34-80 (145)
232 3by6_A Predicted transcription 41.3 99 0.0034 24.0 7.3 56 84-142 17-77 (126)
233 3geu_A Intercellular adhesion 41.3 11 0.00036 29.0 1.6 32 82-113 3-39 (189)
234 3ke2_A Uncharacterized protein 41.2 42 0.0014 27.6 5.2 47 86-135 24-70 (117)
235 3pas_A TETR family transcripti 41.2 9.9 0.00034 28.8 1.4 32 82-113 8-44 (195)
236 3lsj_A DEST; transcriptional r 41.2 18 0.0006 28.5 2.9 30 82-111 11-46 (220)
237 3ljl_A Transcriptional regulat 41.1 11 0.00038 28.8 1.7 33 82-114 14-51 (156)
238 2iai_A Putative transcriptiona 40.9 16 0.00055 29.4 2.7 32 82-113 34-66 (230)
239 2pq8_A Probable histone acetyl 40.9 12 0.00041 34.7 2.1 38 85-122 196-233 (278)
240 2xub_A DNA-directed RNA polyme 40.8 80 0.0028 30.6 8.0 62 86-148 364-431 (534)
241 1qzz_A RDMB, aclacinomycin-10- 40.8 25 0.00086 30.9 4.1 67 72-142 26-92 (374)
242 2qc0_A Uncharacterized protein 40.5 44 0.0015 30.8 5.9 64 81-147 296-360 (373)
243 1jko_C HIN recombinase, DNA-in 40.3 34 0.0012 21.1 3.7 37 79-118 6-42 (52)
244 2k5e_A Uncharacterized protein 40.0 31 0.0011 25.2 3.9 42 85-126 19-69 (73)
245 2g7h_A Methylated-DNA--protein 39.9 11 0.00037 32.4 1.5 73 81-159 78-154 (167)
246 1qpz_A PURA, protein (purine n 39.9 14 0.00049 31.8 2.4 22 98-119 1-22 (340)
247 2wui_A MEXZ, transcriptional r 39.9 19 0.00065 28.4 2.9 33 81-113 10-47 (210)
248 3kkd_A Transcriptional regulat 39.6 14 0.0005 29.6 2.2 30 82-111 35-69 (237)
249 2ras_A Transcriptional regulat 39.6 20 0.0007 27.9 3.0 32 82-113 11-47 (212)
250 2nx4_A Transcriptional regulat 39.6 18 0.00062 28.3 2.8 31 82-112 10-45 (194)
251 2jj7_A Hemolysin II regulatory 39.4 11 0.00037 28.9 1.4 33 82-114 7-44 (186)
252 3bjb_A Probable transcriptiona 39.3 21 0.0007 28.4 3.1 33 82-114 22-59 (207)
253 2hyt_A TETR-family transcripti 39.2 20 0.00069 28.0 3.0 30 82-111 12-46 (197)
254 1ufm_A COP9 complex subunit 4; 39.2 1.2E+02 0.004 22.7 8.3 64 75-138 8-72 (84)
255 2gqq_A Leucine-responsive regu 38.7 8.2 0.00028 31.0 0.6 43 82-125 13-55 (163)
256 1lva_A Selenocysteine-specific 38.6 31 0.0011 30.1 4.3 63 70-133 129-192 (258)
257 3lsg_A Two-component response 38.2 50 0.0017 23.9 4.9 39 83-121 3-43 (103)
258 3ech_A MEXR, multidrug resista 38.2 36 0.0012 25.6 4.1 46 83-131 38-83 (142)
259 3c2b_A Transcriptional regulat 38.0 21 0.0007 28.0 2.8 34 81-114 14-52 (221)
260 2w53_A Repressor, SMet; antibi 38.0 19 0.00066 28.4 2.7 31 83-113 12-47 (219)
261 3e6m_A MARR family transcripti 38.0 46 0.0016 25.7 4.9 47 83-132 54-100 (161)
262 3gwz_A MMCR; methyltransferase 38.0 20 0.00069 32.1 3.1 45 96-143 70-114 (369)
263 3l4g_A Phenylalanyl-tRNA synth 37.8 6.9 0.00023 38.8 0.0 56 81-136 4-68 (508)
264 2wte_A CSA3; antiviral protein 37.8 44 0.0015 29.3 5.2 47 83-132 153-199 (244)
265 2of7_A Putative TETR-family tr 37.5 22 0.00075 29.4 3.1 33 81-113 47-84 (260)
266 3jw4_A Transcriptional regulat 37.4 25 0.00085 26.7 3.2 43 83-125 42-85 (148)
267 2fbq_A Probable transcriptiona 37.4 19 0.00066 29.2 2.7 31 82-112 7-42 (235)
268 3eco_A MEPR; mutlidrug efflux 37.2 1.2E+02 0.0042 22.3 10.5 48 83-132 32-80 (139)
269 2zcx_A SCO7815, TETR-family tr 37.2 23 0.00077 29.1 3.1 33 81-113 22-59 (231)
270 2ou2_A Histone acetyltransfera 36.9 19 0.00064 33.4 2.8 39 85-123 194-238 (280)
271 3tqn_A Transcriptional regulat 36.8 27 0.00091 26.7 3.2 61 81-144 12-77 (113)
272 2z99_A Putative uncharacterize 36.7 61 0.0021 28.8 6.0 62 79-141 11-76 (219)
273 1sfe_A ADA O6-methylguanine-DN 36.6 35 0.0012 29.3 4.3 74 81-159 95-174 (180)
274 1z0x_A Transcriptional regulat 36.6 17 0.00057 29.8 2.2 32 83-114 6-43 (220)
275 2hyj_A Putative TETR-family tr 36.5 19 0.00066 28.4 2.5 32 82-113 12-48 (200)
276 2i10_A Putative TETR transcrip 36.4 22 0.00074 28.1 2.7 30 84-113 17-47 (202)
277 4hbl_A Transcriptional regulat 35.6 74 0.0025 24.2 5.7 41 83-124 42-82 (149)
278 3bpv_A Transcriptional regulat 35.6 1.3E+02 0.0044 22.0 9.5 46 83-131 30-75 (138)
279 3eup_A Transcriptional regulat 35.5 12 0.00041 28.7 1.1 31 82-112 11-46 (204)
280 3gva_A Alkyltransferase-like p 35.4 21 0.00071 28.9 2.5 57 82-138 5-67 (116)
281 3c7j_A Transcriptional regulat 35.4 98 0.0034 26.3 6.9 39 93-133 45-83 (237)
282 3k0l_A Repressor protein; heli 35.4 1.5E+02 0.0051 22.7 8.2 46 83-131 47-92 (162)
283 2g9w_A Conserved hypothetical 35.4 70 0.0024 24.7 5.5 53 82-136 9-65 (138)
284 2hku_A A putative transcriptio 35.3 26 0.00089 27.6 3.1 32 82-113 20-55 (215)
285 3loc_A HTH-type transcriptiona 35.3 12 0.0004 28.9 1.0 32 82-113 18-54 (212)
286 4ham_A LMO2241 protein; struct 35.3 28 0.00097 27.2 3.2 36 94-131 34-70 (134)
287 2r3s_A Uncharacterized protein 35.2 27 0.00094 30.0 3.4 50 78-131 22-71 (335)
288 2ek5_A Predicted transcription 35.2 1.6E+02 0.0055 23.0 9.2 60 84-146 10-74 (129)
289 3cjn_A Transcriptional regulat 35.1 1.5E+02 0.005 22.6 10.2 46 83-131 53-98 (162)
290 2k53_A A3DK08 protein; NESG, C 35.0 35 0.0012 25.2 3.5 40 85-124 17-65 (76)
291 3ni7_A Bacterial regulatory pr 34.9 30 0.001 28.1 3.4 28 86-113 15-43 (213)
292 3h5o_A Transcriptional regulat 34.8 8.2 0.00028 33.3 0.0 24 96-119 3-26 (339)
293 2b5a_A C.BCLI; helix-turn-heli 34.8 19 0.00064 24.3 1.9 33 80-114 8-40 (77)
294 2o20_A Catabolite control prot 34.7 8.2 0.00028 33.2 0.0 25 96-120 4-28 (332)
295 2np3_A Putative TETR-family re 34.6 9.3 0.00032 30.1 0.3 30 83-112 35-65 (212)
296 1lj9_A Transcriptional regulat 34.6 1.4E+02 0.0047 22.1 9.7 46 83-131 30-75 (144)
297 3oio_A Transcriptional regulat 34.4 48 0.0016 24.5 4.3 38 83-120 8-46 (113)
298 2l8n_A Transcriptional repress 34.4 16 0.00054 26.2 1.5 22 97-118 9-30 (67)
299 2k4b_A Transcriptional regulat 34.1 1.1E+02 0.0038 23.2 6.4 57 83-142 36-96 (99)
300 2yu3_A DNA-directed RNA polyme 34.1 77 0.0026 24.6 5.5 43 82-124 37-80 (95)
301 3v6g_A Probable transcriptiona 34.0 24 0.00083 28.4 2.7 31 82-112 14-49 (208)
302 3neu_A LIN1836 protein; struct 33.6 52 0.0018 25.5 4.5 58 82-142 17-79 (125)
303 1tbx_A ORF F-93, hypothetical 33.5 1.3E+02 0.0044 21.4 9.0 46 84-132 10-59 (99)
304 3u2r_A Regulatory protein MARR 33.5 34 0.0012 26.7 3.4 47 83-131 47-94 (168)
305 2pi2_A Replication protein A 3 33.4 8.9 0.0003 34.1 0.0 43 82-124 207-252 (270)
306 3bil_A Probable LACI-family tr 33.4 8.9 0.0003 33.5 0.0 26 95-120 6-31 (348)
307 3p9c_A Caffeic acid O-methyltr 33.3 37 0.0013 30.6 4.0 57 74-132 32-94 (364)
308 2ozu_A Histone acetyltransfera 33.3 32 0.0011 32.0 3.7 37 85-121 201-238 (284)
309 2qvo_A Uncharacterized protein 32.9 41 0.0014 24.4 3.6 43 96-140 29-71 (95)
310 3npi_A TETR family regulatory 32.7 16 0.00055 29.8 1.5 33 82-114 18-55 (251)
311 2oi8_A Putative regulatory pro 32.7 32 0.0011 27.8 3.3 35 79-113 13-52 (216)
312 4aik_A Transcriptional regulat 32.6 61 0.0021 25.4 4.8 43 83-125 32-74 (151)
313 1okr_A MECI, methicillin resis 32.6 55 0.0019 24.2 4.3 56 83-141 11-71 (123)
314 2g7g_A RHA04620, putative tran 32.2 30 0.001 28.1 3.1 30 83-113 12-45 (213)
315 1x19_A CRTF-related protein; m 32.0 40 0.0014 29.8 4.0 65 72-143 41-105 (359)
316 2hs5_A Putative transcriptiona 32.0 1.9E+02 0.0064 24.4 8.1 60 77-138 27-91 (239)
317 3dkw_A DNR protein; CRP-FNR, H 31.4 1.2E+02 0.0042 23.8 6.5 43 82-124 152-205 (227)
318 4b4t_O 26S proteasome regulato 31.4 46 0.0016 30.8 4.5 75 95-170 305-382 (393)
319 3eqx_A FIC domain containing t 31.1 79 0.0027 29.4 6.0 58 85-145 300-358 (373)
320 1qpz_A PURA, protein (purine n 31.0 1.3E+02 0.0043 25.8 6.9 56 77-132 25-94 (340)
321 2pz9_A Putative regulatory pro 31.0 19 0.00064 28.9 1.5 32 82-113 30-66 (226)
322 2g3b_A Putative TETR-family tr 30.7 15 0.00053 29.2 1.0 32 82-113 3-39 (208)
323 3mn2_A Probable ARAC family tr 30.7 61 0.0021 23.7 4.3 36 85-120 5-41 (108)
324 1tw3_A COMT, carminomycin 4-O- 30.5 28 0.00096 30.5 2.7 58 74-135 31-88 (360)
325 2qlz_A Transcription factor PF 30.4 56 0.0019 28.6 4.6 54 81-138 164-217 (232)
326 2o7t_A Transcriptional regulat 30.4 34 0.0012 26.5 3.0 31 83-113 9-44 (199)
327 3jvd_A Transcriptional regulat 30.1 11 0.00037 32.7 0.0 25 95-119 4-28 (333)
328 3fiw_A Putative TETR-family tr 30.0 29 0.001 28.4 2.6 31 83-113 26-61 (211)
329 2ip2_A Probable phenazine-spec 30.0 44 0.0015 28.9 3.9 51 79-133 25-75 (334)
330 2fi0_A Conserved domain protei 29.9 15 0.00051 27.2 0.7 28 94-121 46-73 (81)
331 3nqo_A MARR-family transcripti 29.8 56 0.0019 26.4 4.3 47 83-131 42-89 (189)
332 1hqc_A RUVB; extended AAA-ATPa 29.8 1.3E+02 0.0045 25.4 6.8 60 78-138 244-304 (324)
333 2frh_A SARA, staphylococcal ac 29.7 83 0.0029 23.7 5.0 43 83-125 38-81 (127)
334 2k9q_A Uncharacterized protein 29.6 51 0.0018 22.5 3.5 32 81-114 1-32 (77)
335 3lmm_A Uncharacterized protein 29.5 11 0.00039 37.2 0.0 50 82-134 516-565 (583)
336 1z6r_A MLC protein; transcript 29.4 62 0.0021 29.3 4.9 40 84-124 18-57 (406)
337 2hsg_A Glucose-resistance amyl 29.2 98 0.0033 26.3 5.9 56 77-132 27-96 (332)
338 3oop_A LIN2960 protein; protei 29.2 1.8E+02 0.006 21.6 9.3 48 82-132 37-84 (143)
339 3crj_A Transcription regulator 29.1 33 0.0011 26.9 2.7 34 80-113 12-50 (199)
340 1jye_A Lactose operon represso 29.0 12 0.0004 32.6 0.0 25 97-121 3-27 (349)
341 3t8r_A Staphylococcus aureus C 28.9 83 0.0028 25.0 5.1 39 86-124 15-55 (143)
342 1bl0_A Protein (multiple antib 28.7 76 0.0026 24.1 4.7 40 81-120 10-50 (129)
343 1v4r_A Transcriptional repress 28.5 5 0.00017 29.9 -2.2 36 94-131 31-67 (102)
344 3oou_A LIN2118 protein; protei 28.3 69 0.0024 23.5 4.2 36 85-120 8-44 (108)
345 1ylf_A RRF2 family protein; st 28.3 60 0.0021 25.8 4.1 39 86-124 18-57 (149)
346 1z7u_A Hypothetical protein EF 28.1 1.1E+02 0.0038 22.8 5.4 44 80-125 20-64 (112)
347 1fp1_D Isoliquiritigenin 2'-O- 28.0 74 0.0025 28.3 5.1 66 76-143 38-118 (372)
348 3rkx_A Biotin-[acetyl-COA-carb 28.0 86 0.0029 28.5 5.6 41 83-123 4-45 (323)
349 2v57_A TETR family transcripti 27.9 34 0.0012 26.0 2.5 32 81-113 13-48 (190)
350 1z6t_A APAF-1, apoptotic prote 27.9 1.8E+02 0.0061 27.1 7.9 74 76-152 372-448 (591)
351 2gfn_A HTH-type transcriptiona 27.8 31 0.0011 27.4 2.4 33 81-113 8-45 (209)
352 1x57_A Endothelial differentia 27.8 98 0.0034 21.7 4.8 38 75-114 6-43 (91)
353 3kp7_A Transcriptional regulat 27.6 32 0.0011 26.2 2.3 45 83-131 39-83 (151)
354 3dbi_A Sugar-binding transcrip 27.3 13 0.00045 31.9 0.0 66 97-165 3-89 (338)
355 3c07_A Putative TETR-family tr 27.2 44 0.0015 28.3 3.3 33 81-113 40-77 (273)
356 1uxc_A FRUR (1-57), fructose r 27.2 39 0.0013 24.0 2.5 23 78-100 29-51 (65)
357 2ev1_A Hypothetical protein RV 27.1 43 0.0015 29.8 3.3 39 98-141 79-117 (222)
358 2y9k_A Protein INVG; protein t 27.0 55 0.0019 26.0 3.6 62 81-144 7-72 (137)
359 3iuo_A ATP-dependent DNA helic 26.9 82 0.0028 24.7 4.6 39 86-124 21-59 (122)
360 2l8n_A Transcriptional repress 26.7 40 0.0014 24.0 2.5 22 78-99 35-56 (67)
361 4b4t_Q 26S proteasome regulato 26.7 1.8E+02 0.0062 24.7 7.1 68 79-146 338-405 (434)
362 3dv8_A Transcriptional regulat 26.6 53 0.0018 25.9 3.5 47 83-131 148-201 (220)
363 4fx0_A Probable transcriptiona 26.5 69 0.0024 25.0 4.1 46 84-131 35-84 (148)
364 3ctp_A Periplasmic binding pro 26.3 14 0.00048 31.7 0.0 24 97-120 2-25 (330)
365 3bwg_A Uncharacterized HTH-typ 26.1 28 0.00096 29.8 1.9 59 82-143 9-72 (239)
366 3kjx_A Transcriptional regulat 25.8 1E+02 0.0035 26.4 5.4 57 77-133 35-105 (344)
367 3iz6_V 40S ribosomal protein S 25.7 73 0.0025 25.7 4.1 60 80-140 44-103 (108)
368 2p8t_A Hypothetical protein PH 25.7 78 0.0027 27.6 4.6 41 84-124 17-57 (200)
369 1ft9_A Carbon monoxide oxidati 25.7 1E+02 0.0035 24.6 5.1 51 81-133 133-197 (222)
370 2k9s_A Arabinose operon regula 25.6 95 0.0033 22.6 4.6 36 85-120 6-43 (107)
371 2fxa_A Protease production reg 25.6 1.2E+02 0.004 25.1 5.6 43 82-125 48-90 (207)
372 3kfw_X Uncharacterized protein 25.6 1.5E+02 0.0051 26.3 6.5 63 80-147 2-68 (247)
373 1z05_A Transcriptional regulat 25.3 80 0.0027 29.0 4.9 41 83-124 40-80 (429)
374 2pjp_A Selenocysteine-specific 25.2 43 0.0015 25.8 2.6 50 82-134 7-56 (121)
375 3hsr_A HTH-type transcriptiona 25.2 74 0.0025 23.9 4.0 47 83-132 37-83 (140)
376 3lwf_A LIN1550 protein, putati 25.1 95 0.0032 25.5 4.9 38 87-124 32-71 (159)
377 3u1d_A Uncharacterized protein 25.1 1.1E+02 0.0037 25.6 5.2 70 80-151 27-107 (151)
378 4b4t_R RPN7, 26S proteasome re 25.0 2.3E+02 0.0078 26.1 8.0 69 79-147 329-397 (429)
379 3b7h_A Prophage LP1 protein 11 24.9 87 0.003 20.9 3.9 32 81-114 6-37 (78)
380 3hrs_A Metalloregulator SCAR; 24.6 2.4E+02 0.0082 23.6 7.4 40 93-134 16-55 (214)
381 1zug_A Phage 434 CRO protein; 24.4 86 0.0029 20.5 3.7 30 83-114 4-33 (71)
382 2k9m_A RNA polymerase sigma fa 24.3 26 0.00089 28.3 1.3 39 85-123 26-65 (130)
383 3edp_A LIN2111 protein; APC883 24.0 82 0.0028 26.9 4.4 60 80-142 11-75 (236)
384 3ryp_A Catabolite gene activat 23.9 1.1E+02 0.0036 23.9 4.8 48 82-131 139-199 (210)
385 1jgs_A Multiple antibiotic res 23.8 2.1E+02 0.0073 20.8 10.0 46 83-131 35-80 (138)
386 3t72_q RNA polymerase sigma fa 23.8 2.4E+02 0.0082 21.4 6.8 42 77-118 18-60 (99)
387 3b02_A Transcriptional regulat 23.8 80 0.0027 24.7 4.0 50 81-132 110-172 (195)
388 3s2w_A Transcriptional regulat 23.8 2.4E+02 0.0082 21.4 9.7 47 83-132 51-97 (159)
389 2wv0_A YVOA, HTH-type transcri 23.3 55 0.0019 28.1 3.2 58 83-143 15-77 (243)
390 1eh6_A O6-alkylguanine-DNA alk 23.3 48 0.0016 29.1 2.8 57 82-138 93-156 (207)
391 1xd7_A YWNA; structural genomi 23.2 1E+02 0.0035 24.3 4.5 38 86-124 13-50 (145)
392 1pdn_C Protein (PRD paired); p 23.1 1.9E+02 0.0063 20.7 5.7 46 75-123 14-59 (128)
393 1sd4_A Penicillinase repressor 23.1 1.3E+02 0.0045 22.1 5.0 52 82-136 10-65 (126)
394 3u5c_Z RP45, S31, YS23, 40S ri 22.8 84 0.0029 25.3 3.9 60 80-140 43-102 (108)
395 3iwz_A CAP-like, catabolite ac 22.7 1.2E+02 0.0041 24.0 4.9 47 83-131 160-219 (230)
396 3qyf_A Crispr-associated prote 22.5 57 0.0019 30.7 3.3 67 71-148 197-265 (324)
397 4ich_A Transcriptional regulat 22.5 51 0.0017 28.2 2.8 34 80-113 118-156 (311)
398 2oz6_A Virulence factor regula 22.4 1.2E+02 0.004 23.6 4.7 34 97-132 164-197 (207)
399 3sxy_A Transcriptional regulat 22.4 2.4E+02 0.0081 23.1 6.9 64 76-142 10-77 (218)
400 1b4a_A Arginine repressor; hel 22.3 2.1E+02 0.0071 23.5 6.4 56 84-144 6-67 (149)
401 3cjd_A Transcriptional regulat 22.2 55 0.0019 25.7 2.8 33 80-112 10-47 (198)
402 3d0s_A Transcriptional regulat 22.0 1.1E+02 0.0037 24.4 4.5 34 97-132 177-210 (227)
403 3eet_A Putative GNTR-family tr 21.8 59 0.002 28.6 3.2 44 82-125 33-81 (272)
404 3f8m_A GNTR-family protein tra 21.7 1.4E+02 0.0046 25.7 5.4 45 94-142 32-77 (248)
405 3df8_A Possible HXLR family tr 21.7 1.2E+02 0.0041 22.8 4.5 56 84-141 29-85 (111)
406 2fmy_A COOA, carbon monoxide o 21.6 1E+02 0.0035 24.5 4.3 50 81-132 137-200 (220)
407 3mcz_A O-methyltransferase; ad 21.5 68 0.0023 28.0 3.5 45 95-144 54-98 (352)
408 1r69_A Repressor protein CI; g 21.2 1.1E+02 0.0036 19.9 3.7 28 85-114 4-31 (69)
409 2r1j_L Repressor protein C2; p 21.1 98 0.0033 19.9 3.5 31 82-114 5-35 (68)
410 1hw1_A FADR, fatty acid metabo 21.1 96 0.0033 25.6 4.2 59 81-142 10-73 (239)
411 1y7y_A C.AHDI; helix-turn-heli 21.0 1.2E+02 0.004 19.9 3.9 31 82-114 13-43 (74)
412 2zcw_A TTHA1359, transcription 20.9 1.4E+02 0.0048 23.4 4.9 48 83-132 119-179 (202)
413 4ac0_A Tetracycline repressor 20.8 32 0.0011 28.3 1.1 27 87-113 12-39 (202)
414 1adr_A P22 C2 repressor; trans 20.8 98 0.0033 20.5 3.5 31 82-114 5-35 (76)
415 4g6q_A Putative uncharacterize 20.6 1.6E+02 0.0055 24.2 5.5 54 79-136 20-74 (182)
416 3l09_A Putative transcriptiona 20.6 3.3E+02 0.011 24.5 7.9 68 80-149 21-96 (266)
417 2hzt_A Putative HTH-type trans 20.4 1.2E+02 0.004 22.5 4.2 41 83-125 15-56 (107)
418 2fbk_A Transcriptional regulat 20.4 50 0.0017 26.2 2.2 42 83-124 70-113 (181)
419 1pzn_A RAD51, DNA repair and r 20.3 1.3E+02 0.0044 27.1 5.2 51 72-124 33-91 (349)
420 3rag_A Uncharacterized protein 20.1 1.5E+02 0.0051 26.6 5.4 58 75-132 110-175 (242)
421 2hxi_A Putative transcriptiona 20.1 57 0.0019 27.3 2.6 32 82-113 29-65 (241)
No 1
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=95.59 E-value=0.013 Score=52.52 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=49.0
Q ss_pred CchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 023574 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP 142 (280)
...+.-.+++.+. .|.-+|+.++|+.+|.+.+++++.|..|. .++.+++|+|+. ||
T Consensus 20 ~~~~~~~llr~la-~Grpv~~~~LA~~~g~~~~~v~~~L~~l~-----~~~~D~~G~Ivg-yp 75 (220)
T 3f2g_A 20 TADLLVPLLRELA-KGRPVSRTTLAGILDWPAERVAAVLEQAT-----STEYDKDGNIIG-YG 75 (220)
T ss_dssp HHHHHHHHHHHHT-TTSCBCHHHHHHHHTCCHHHHHHHHHHCT-----TCEECTTSCEEE-SS
T ss_pred chHHHHHHHHHHh-cCCCCCHHHHHHHhCcCHHHHHHHHHhCC-----cEEECCCCCEEE-ec
Confidence 3456677888888 99999999999999999999999999885 699999999977 64
No 2
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=95.31 E-value=0.027 Score=42.23 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 85 ~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
+.++.-+....+..|+|+||+.-|.+|++|+.+|..|-++
T Consensus 6 eaLLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~ 45 (68)
T 3i71_A 6 DELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSA 45 (68)
T ss_dssp HHHHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhc
Confidence 5678888999999999999999999999999999999876
No 3
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=95.29 E-value=0.048 Score=39.21 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesG 135 (280)
.+.+|++.+++.+..+|+.|+|.+.|++...+.+.|..|.++.- ++.++.|
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~--I~~~~~G 61 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDR--VSSPSPK 61 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTS--EEEEETT
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCc--EecCCCc
Confidence 57899999999888899999999999999999999999987633 6555555
No 4
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=94.84 E-value=0.052 Score=40.91 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHc-----CCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 82 DVRNRAMDAVDAC-----NRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 82 ~~~~~im~Ave~l-----g~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
+-..+|++.+++. |+.+|+.|+|..-|+|...+++.|.+|..+
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~k 51 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDV 51 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4567889999888 999999999999999999999999999876
No 5
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=93.96 E-value=0.095 Score=40.79 Aligned_cols=44 Identities=9% Similarity=0.214 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~ 125 (280)
+..++|+++++..|.-+..||||..+|++..++.++|.+|-.+.
T Consensus 19 d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEg 62 (80)
T 2lnb_A 19 HLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKEL 62 (80)
T ss_dssp HHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999999999998763
No 6
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=93.30 E-value=0.77 Score=35.92 Aligned_cols=84 Identities=14% Similarity=0.200 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHcCCc-eehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec----cCCcEEEEc-CcchHHHHhhhhHH
Q 023574 82 DVRNRAMDAVDACNRR-VTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS----DEGDVLYVF-PNNYRAKLAAKSFR 155 (280)
Q Consensus 82 ~~~~~im~Ave~lg~R-vTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs----esGEIlYvF-P~~fRs~l~~Ks~r 155 (280)
..+.+|+.++.+.+.. +|+.|+|.+.|++...+.+.|..|.... -++-. +.|-..|+| +....... +-++
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~G--lV~r~~~~~d~~~~~~~y~~~~~~~~~--~~i~ 101 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKE--ILQRSQQNLDGGGYVYIYKIYSKNQIR--NIIQ 101 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTT--SEEEEEEECTTSCEEEEEEECCHHHHH--HHHH
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC--CEEeeCCccCCCcceEEEecCCHHHHH--HHHH
Confidence 4467899999988877 9999999999999999999999998763 33322 234466666 33333322 4456
Q ss_pred HhHHHHHHHhhhhh
Q 023574 156 LKVEPVIDKAKAAA 169 (280)
Q Consensus 156 ~rl~~~~~k~w~v~ 169 (280)
..+++|.+.+...+
T Consensus 102 ~~~~~~~~~~~~~l 115 (123)
T 3r0a_A 102 KIVQSWADRLGQEL 115 (123)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777766554
No 7
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=92.24 E-value=0.39 Score=36.15 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec-----cCCcEEEE
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS-----DEGDVLYV 140 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs-----esGEIlYv 140 (280)
+.+.+|+..+-+.|..+|+.|+|...|++...+.++|..|..+. -++.. ..|-.+|.
T Consensus 18 ~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~G--lV~~~~~~~~~~g~~v~~ 79 (110)
T 1q1h_A 18 DDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQG--FVSYRKTRDKDSGWFIYY 79 (110)
T ss_dssp STTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHT--SCEEEEEC---CCCCEEE
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC--CEEEEecccCCCceEEEE
Confidence 45678898887788789999999999999999999999999874 35544 45777773
No 8
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=91.45 E-value=0.55 Score=41.39 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=53.6
Q ss_pred cccCCCC-chHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcch
Q 023574 74 VESDKLP-ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (280)
Q Consensus 74 v~~~~l~-~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~~f 145 (280)
|++..-. .....+|++.++.. +.+|+.++|..-|.+..-|+..|..+-. .|-|=+++++|-+|.||.-|
T Consensus 145 vqs~~~~~~~~~~~il~~~~~~-g~vt~~~la~~l~ws~~~a~e~L~~~e~--~G~l~~D~~~eg~~y~pn~f 214 (218)
T 3cuq_B 145 IELQSHKEEEMVASALETVSEK-GSLTSEEFAKLVGMSVLLAKERLLLAEK--MGHLCRDDSVEGLRFYPNLF 214 (218)
T ss_dssp EEETTCCGGGGHHHHHHHHHHT-SCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEESSSCEEEEECGG
T ss_pred EEcCCCchHHHHHHHHHHHHHC-CCcCHHHHHHHhCCCHHHHHHHHHHHHH--cCCEEEECCCCceEEehhhc
Confidence 5554332 35678888888865 5699999999999999999999988555 67777777777788899655
No 9
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=90.66 E-value=0.28 Score=37.06 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=39.9
Q ss_pred CchHHHHHHHHHHHcC--CceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 80 PADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg--~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
..+...+|++++++.+ .++|+.|+|.+-|++...+++.|..|..+
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK 54 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3466788999999887 48999999999999999999999999865
No 10
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=90.43 E-value=0.33 Score=36.86 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHHcCCceehhhhhhhcCCCHH-HHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLN-EAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 81 ~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~-~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
++.+++|++.+++.| ..|+.|+|..-|++.. .+++.|..|..+ |-++-...|-.+|.-
T Consensus 10 ~~~~~~IL~~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~Le~e--GlV~~~~~gRP~w~L 68 (79)
T 1xmk_A 10 AEIKEKICDYLFNVS-DSSALNLAKNIGLTKARDINAVLIDMERQ--GDVYRQGTTPPIWHL 68 (79)
T ss_dssp HHHHHHHHHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHHHHHT--TSEEEECSSSCEEEE
T ss_pred hhHHHHHHHHHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHHHHHC--CCEEecCCCCCCeEe
Confidence 367899999999998 5899999999999999 999999999886 344434456666654
No 11
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=90.12 E-value=0.49 Score=34.19 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 84 ~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
+.+|++.+.+.+ .+|+.|+|...|++...+.+.|..|.++ |-++.
T Consensus 2 r~~Il~~L~~~~-~~s~~eLa~~lgvs~~tv~r~L~~L~~~--GlI~~ 46 (81)
T 2htj_A 2 KNEILEFLNRHN-GGKTAEIAEALAVTDYQARYYLLLLEKA--GMVQR 46 (81)
T ss_dssp HHHHHHHHHHSC-CCCHHHHHHHHTSCHHHHHHHHHHHHHH--TSEEE
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEE
Confidence 578899998764 6999999999999999999999999876 55663
No 12
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=89.59 E-value=0.81 Score=32.76 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=46.1
Q ss_pred chHHHHHHHHHHHcC-Cceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEE
Q 023574 81 ADVRNRAMDAVDACN-RRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (280)
Q Consensus 81 ~~~~~~im~Ave~lg-~RvTvGDVAa~a-----GL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYv 140 (280)
...+..|++++.+.+ ..+|+.|++... +++...+-+.|..|....-=+=...++|...|.
T Consensus 16 t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y~ 81 (83)
T 2fu4_A 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFE 81 (83)
T ss_dssp CHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEee
Confidence 356788999998876 789999999998 999999999999998874332222234666664
No 13
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=89.41 E-value=0.43 Score=35.29 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=39.9
Q ss_pred CchHHHHHHHHHHHcC--CceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 80 PADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg--~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
..+...+|++++++.+ .++|+.|+|.+-|++...+++.|..|..+
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~ 58 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKK 58 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3456788999999988 58999999999999999999999999765
No 14
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=89.31 E-value=0.69 Score=41.72 Aligned_cols=69 Identities=19% Similarity=0.340 Sum_probs=51.7
Q ss_pred ccccCC--CCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc--CCcEEEEcCcch
Q 023574 73 IVESDK--LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDVLYVFPNNY 145 (280)
Q Consensus 73 ~v~~~~--l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVse--sGEIlYvFP~~f 145 (280)
.|+|.. |.++. .+++++++. .+.||+.+++..-|.+..-|+.+|..|..+ |.|=|++ +||-.|-||.-|
T Consensus 144 ~VqSvp~el~~D~-~~vLela~~-~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~--GllwvD~q~~ge~~Yw~P~lf 216 (234)
T 3cuq_A 144 LIQSVPAELNMDH-TVVLQLAEK-NGYVTVSEIKASLKWETERARQVLEHLLKE--GLAWLDLQAPGEAHYWLPALF 216 (234)
T ss_dssp EEECSCCCCCHHH-HHHHHHHTT-TSEECHHHHHHHHTCCHHHHHHHHHHHHHH--TSCEEESSSSSSCEEECTTSS
T ss_pred EEEeCCCccchHH-HHHHHHHHh-cCcCcHHHHHHHhCCCHHHHHHHHHHHHhC--CCEEEeCCCCCcceeecchhh
Confidence 344443 44444 446777764 467999999999999999999999997766 4555554 589999999655
No 15
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=88.52 E-value=0.47 Score=42.76 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC--CcEEEEcCcch
Q 023574 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE--GDVLYVFPNNY 145 (280)
Q Consensus 84 ~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVses--GEIlYvFP~~f 145 (280)
..++++.++. .+.||+.+++..-|.+..-|+.+|..|..+ |.|=|+++ ||..|-||..|
T Consensus 169 ~~~vLe~a~~-~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~--G~lwvD~q~~~e~~Yw~P~lf 229 (233)
T 1u5t_A 169 QTKILEICSI-LGYSSISLLKANLGWEAVRSKSALDEMVAN--GLLWIDYQGGAEALYWDPSWI 229 (233)
T ss_dssp HHHHHHTTTT-TSCCBHHHHHHHHCCCSHHHHHHHHHHHHT--TSSEEECSSSSSCEEECGGGG
T ss_pred HHHHHHHHHh-cCcCcHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEEeCCCCCccceechhhh
Confidence 3556677765 567999999999999999999999987655 66666664 58899999665
No 16
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=87.09 E-value=1.4 Score=31.65 Aligned_cols=59 Identities=14% Similarity=0.330 Sum_probs=45.9
Q ss_pred CchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc-EEEEc
Q 023574 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVF 141 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGE-IlYvF 141 (280)
....+.+|+.++.+ ++..|+.|+|...|++...+.+.|..|.. .|-++...+|. ..|..
T Consensus 22 ~~~~~~~il~~l~~-~~~~s~~ela~~l~is~~tvs~~l~~L~~--~glv~~~~~~r~~~y~l 81 (99)
T 3cuo_A 22 SHPKRLLILCMLSG-SPGTSAGELTRITGLSASATSQHLARMRD--EGLIDSQRDAQRILYSI 81 (99)
T ss_dssp CSHHHHHHHHHHTT-CCSEEHHHHHHHHCCCHHHHHHHHHHHHH--TTSEEEEECSSCEEEEE
T ss_pred CChHHHHHHHHHHh-CCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEecCCEEEEEE
Confidence 34667889998865 66899999999999999999999999963 56676666554 44544
No 17
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=86.96 E-value=6.3 Score=29.03 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=44.8
Q ss_pred CCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcE-EEEc
Q 023574 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDV-LYVF 141 (280)
Q Consensus 79 l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEI-lYvF 141 (280)
|....+.+|+..+ ..| ..|+.|+|...|++...+.+.|..|.. .|-++...+|.- .|..
T Consensus 18 l~~~~r~~IL~~L-~~~-~~~~~ela~~l~is~~tv~~~l~~L~~--~gli~~~~~gr~~~y~l 77 (114)
T 2oqg_A 18 LSDETRWEILTEL-GRA-DQSASSLATRLPVSRQAIAKHLNALQA--CGLVESVKVGREIRYRA 77 (114)
T ss_dssp TTCHHHHHHHHHH-HHS-CBCHHHHHHHSSSCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEE
T ss_pred hCChHHHHHHHHH-HcC-CCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeeEEecCCEEEEEe
Confidence 3445678899999 444 489999999999999999999999964 466766655654 3443
No 18
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=86.89 E-value=4.4 Score=30.99 Aligned_cols=59 Identities=15% Similarity=0.282 Sum_probs=46.9
Q ss_pred CCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc-EEEEc
Q 023574 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVF 141 (280)
Q Consensus 79 l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGE-IlYvF 141 (280)
|....|.+|+..+. .+..|++|+|...|++...+-+-|..|.. .|-++...+|. +.|..
T Consensus 15 l~~~~R~~Il~~L~--~~~~~~~eLa~~l~is~~tvs~hL~~L~~--~GlV~~~~~gr~~~y~l 74 (118)
T 3f6o_A 15 LADPTRRAVLGRLS--RGPATVSELAKPFDMALPSFMKHIHFLED--SGWIRTHKQGRVRTCAI 74 (118)
T ss_dssp HTSHHHHHHHHHHH--TCCEEHHHHHTTCCSCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEE
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHhCcCHHHHHHHHHHHHH--CCCeEEEecCCEEEEEE
Confidence 34567889999997 46789999999999999999999999964 56777777765 44444
No 19
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=86.43 E-value=1.2 Score=32.80 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=42.4
Q ss_pred CchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023574 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~ 125 (280)
.|-....+++.++..|+-+-+.++|++-|++.+++-..|..|+++.
T Consensus 8 ~~~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KG 53 (59)
T 2xvc_A 8 HMITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKG 53 (59)
T ss_dssp CCCCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTT
T ss_pred hhccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 4666789999999999999999999999999999999999999873
No 20
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=86.41 E-value=1.4 Score=32.51 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=42.5
Q ss_pred CchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
....+.+|++.+ .+..|++|+|.+.|++...+.+.|..|... |-++... | .|..
T Consensus 29 ~~~~r~~Il~~L---~~~~~~~eLa~~l~is~~tv~~~L~~L~~~--Glv~~~~-g--~y~l 82 (96)
T 1y0u_A 29 TNPVRRKILRML---DKGRSEEEIMQTLSLSKKQLDYHLKVLEAG--FCIERVG-E--RWVV 82 (96)
T ss_dssp SCHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET-T--EEEE
T ss_pred CCHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEC-C--EEEE
Confidence 345677889988 345999999999999999999999999765 5666555 5 4544
No 21
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=86.03 E-value=0.95 Score=34.83 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 81 ~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
.++..+|++.+++.| .|+.|+|.+-|++...+++-|..|..+
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~aVr~~L~~Le~e 57 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKREVNKALYDLQRS 57 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 357788999999766 999999999999999999999999776
No 22
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=85.33 E-value=1.3 Score=32.38 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=46.7
Q ss_pred CchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc-EEEEc
Q 023574 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVF 141 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGE-IlYvF 141 (280)
....+.+|+..+.+ +..|++|+|...|++...+.+.|..|.. .|-++...+|. +.|..
T Consensus 21 ~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~--~Glv~~~~~g~~~~y~l 79 (98)
T 3jth_A 21 ANERRLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRR--DGLVTTRKEAQTVYYTL 79 (98)
T ss_dssp CSHHHHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEECCTTCCEEEE
T ss_pred CCHHHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEEEE
Confidence 34567788998876 6899999999999999999999999965 56777777765 44544
No 23
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=84.85 E-value=2.3 Score=31.88 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=47.2
Q ss_pred CCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 79 l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
|....+.+|+..+. .+..|++|+|...|++...+.+.|..|. ..|-++...+|.-+|..
T Consensus 23 l~~~~r~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L~--~~Glv~~~~~gr~~~y~ 81 (106)
T 1r1u_A 23 LGDYNRIRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAKRQGQSMIYS 81 (106)
T ss_dssp TCSHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEEETTEEEEE
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEeCCEEEEE
Confidence 44567788999997 3458999999999999999999999997 46777777777755544
No 24
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=84.25 E-value=2.8 Score=34.25 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=47.7
Q ss_pred CCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 79 l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
|....|-+|+..+. .+..|++|+|...|++...+-+-|..|.. -|-++...+|.-+|..
T Consensus 55 L~~p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~--aGlV~~~~~Gr~~~y~ 113 (151)
T 3f6v_A 55 AAEPTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTE--AGLVTPRKDGRFRYYR 113 (151)
T ss_dssp HTSHHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHH--TTSEEEEEETTEEEEE
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEecCCEEEEE
Confidence 34577899999997 35699999999999999999999999965 4677777777665554
No 25
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=83.87 E-value=1.6 Score=32.69 Aligned_cols=42 Identities=12% Similarity=0.032 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~ 125 (280)
.-.+|++.+++. +++|+.|+|..-+++...+++.|..|....
T Consensus 3 ~L~~Il~~L~~~-g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G 44 (78)
T 1xn7_A 3 SLIQVRDLLALR-GRMEAAQISQTLNTPQPMINAMLQQLESMG 44 (78)
T ss_dssp CHHHHHHHHHHS-CSBCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 346788898775 579999999999999999999999999873
No 26
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=83.71 E-value=1.5 Score=33.76 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~ 125 (280)
.-.+|++.|++. +++|+.|+|..-|++...+++.|..|....
T Consensus 3 ~L~~Il~~L~~~-g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G 44 (87)
T 2k02_A 3 SLMEVRDMLALQ-GRMEAKQLSARLQTPQPLIDAMLERMEAMG 44 (87)
T ss_dssp CTHHHHHHHHHS-CSEEHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHc-CCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 346788998775 689999999999999999999999998763
No 27
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=83.30 E-value=2.1 Score=32.43 Aligned_cols=57 Identities=26% Similarity=0.390 Sum_probs=45.6
Q ss_pred chHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 81 ~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
...+.+|+..+.. +..|++|+|...|++...+.+.|..|.. .|-++...+|.-+|..
T Consensus 24 ~~~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~--~GlV~~~~~gr~~~y~ 80 (108)
T 2kko_A 24 NGRRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKS--GGLVEARREGTRQYYR 80 (108)
T ss_dssp TSTTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEEE
Confidence 4456789998864 6789999999999999999999999975 4677777777655543
No 28
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=82.43 E-value=11 Score=26.75 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc--CCcEEEEc
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDVLYVF 141 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVse--sGEIlYvF 141 (280)
..+-+|+..+.+. +..|+.|+|...|++...+.+.|..|..+ |-++... ++...|.+
T Consensus 20 ~~~~~il~~l~~~-~~~s~~ela~~l~is~~tv~~~l~~L~~~--glv~~~~~~~~r~~~~~ 78 (109)
T 1sfx_A 20 PSDVRIYSLLLER-GGMRVSEIARELDLSARFVRDRLKVLLKR--GFVRREIVEKGWVGYIY 78 (109)
T ss_dssp HHHHHHHHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEEEESSSEEEEE
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEEeecCCceEEEE
Confidence 4567888998765 45999999999999999999999999776 4444433 45555544
No 29
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=81.15 E-value=1.4 Score=34.12 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=32.7
Q ss_pred CchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHH
Q 023574 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQ 119 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~ 119 (280)
+.+-+.+|++.+.+.+ +|+.|||..+|+|...+.+.|.
T Consensus 5 ~~~R~~~I~~~l~~~~--~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 5 IKERTIKIGKYIVETK--KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHHHHHC--CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC--CCHHHHHHHHCCCHHHHHHHHc
Confidence 4456678899999887 9999999999999999988873
No 30
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=80.17 E-value=14 Score=28.39 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcch
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~~f 145 (280)
....+...++..+..++..|++..+|++.++.++.|..|.+... -+.+..+++..| +..++
T Consensus 3 ~~~~l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~-~~~~~~~~~~~~-~~~~~ 63 (135)
T 2v9v_A 3 PEKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQ-VTLLRVENDLYA-ISTER 63 (135)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTC-EEEEEETTEEEE-EEHHH
T ss_pred HHHHHHHHHHHcCcCCCHHHHHHHhCCCHHHHHHHHHHHHhCCc-EEEEecCCCeEE-ecHHH
Confidence 34567788888888887799999999999999988888875543 555544344334 53333
No 31
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=80.00 E-value=3.6 Score=36.01 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=47.4
Q ss_pred HHcCCceehhhhhhhcCCCHHHHHHHHH--------------HHHhhcCC--------ceEeccCCcEEEEcCcchHHHH
Q 023574 92 DACNRRVTIGDVAGKAGLKLNEAQKALQ--------------ALAADTDG--------FLEVSDEGDVLYVFPNNYRAKL 149 (280)
Q Consensus 92 e~lg~RvTvGDVAa~aGL~L~~Ae~aL~--------------aLAsD~~G--------hLqVsesGEIlYvFP~~fRs~l 149 (280)
.....++|+.|||..+|+|...+-++|. +.|.+.|= .|.-..++-|..++|.....-+
T Consensus 4 ~~~~~~~Ti~diA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lgY~~pn~~a~~l~~~~s~~Igvi~~~~~~~~~ 83 (366)
T 3h5t_A 4 GRKQQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDPVARSLRTRRAGAIGVLLTEDLTYAF 83 (366)
T ss_dssp ---CCTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC--------------CCEEEEEESSCTTHHH
T ss_pred CccCCCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHhhcCCCCEEEEEecCCccccc
Confidence 3446789999999999999999988873 34444332 3555667888899987654445
Q ss_pred hhhhHHHhHHHHHHHhh
Q 023574 150 AAKSFRLKVEPVIDKAK 166 (280)
Q Consensus 150 ~~Ks~r~rl~~~~~k~w 166 (280)
.+.++..-++.+-+.+.
T Consensus 84 ~~~~~~~~~~gi~~~a~ 100 (366)
T 3h5t_A 84 EDMASVDFLAGVAQAAG 100 (366)
T ss_dssp HSHHHHHHHHHHHHHSS
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 56666666665555554
No 32
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=78.89 E-value=5.3 Score=31.63 Aligned_cols=63 Identities=16% Similarity=0.263 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhc--CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcchHHHH
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKA--GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKL 149 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~a--GL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~~fRs~l 149 (280)
..+.+|++.+.+.| +.|++++|... |++...+.+-|..|..+ |-++....| +|.-...=+..|
T Consensus 13 ~~d~~IL~~L~~~g-~~s~~eLA~~l~~giS~~aVs~rL~~Le~~--GLV~~~~rg--~Y~LT~~G~~~l 77 (111)
T 3b73_A 13 IWDDRILEIIHEEG-NGSPKELEDRDEIRISKSSVSRRLKKLADH--DLLQPLANG--VYVITEEGEAYL 77 (111)
T ss_dssp HHHHHHHHHHHHHS-CBCHHHHHTSTTCCSCHHHHHHHHHHHHHT--TSEEECSTT--CEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHC--CCEEecCCc--eEEECchHHHHH
Confidence 34688999998766 89999999999 99999999999999876 444444444 666543333333
No 33
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=76.39 E-value=3.3 Score=30.52 Aligned_cols=59 Identities=17% Similarity=0.302 Sum_probs=46.1
Q ss_pred CCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc-EEEEc
Q 023574 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVF 141 (280)
Q Consensus 79 l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGE-IlYvF 141 (280)
|....|.+|+..+.. +..|++|+|...|++...+.+.|..|.. .|-++...+|. +.|..
T Consensus 20 l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~--~Glv~~~~~g~~~~y~l 79 (102)
T 3pqk_A 20 LSHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRE--SGIVETRRNIKQIFYRL 79 (102)
T ss_dssp HCSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHH--TTSEEEECSSSCCEEEE
T ss_pred cCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEEEE
Confidence 345677889999964 4599999999999999999999999954 46677776665 55554
No 34
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=76.33 E-value=5.1 Score=30.76 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=46.0
Q ss_pred CchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
....+.+|+..+.. +..|++|+|...|++...+.+.|..|.. .|-++...+|.-+|..
T Consensus 19 ~~~~r~~IL~~L~~--~~~~~~eLa~~lgis~stvs~~L~~L~~--~GlV~~~~~gr~~~y~ 76 (118)
T 2jsc_A 19 ADPTRCRILVALLD--GVCYPGQLAAHLGLTRSNVSNHLSCLRG--CGLVVATYEGRQVRYA 76 (118)
T ss_dssp SSHHHHHHHHHHHT--TCCSTTTHHHHHSSCHHHHHHHHHHHTT--TTSEEEEECSSSEEEE
T ss_pred CCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCceEEEEECCEEEEE
Confidence 34567889999873 4589999999999999999999999975 6778877777644443
No 35
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=75.93 E-value=2.1 Score=33.86 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=28.7
Q ss_pred CCCCchHHHHHHHHH----HHcCC-ceehhhhhhhcCCCHH
Q 023574 77 DKLPADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLN 112 (280)
Q Consensus 77 ~~l~~~~~~~im~Av----e~lg~-RvTvGDVAa~aGL~L~ 112 (280)
.+++.+.+++|++|+ .+.|+ .+|+.|||.++|++..
T Consensus 7 ~~~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~ 47 (189)
T 3vp5_A 7 FSLSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRG 47 (189)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChH
Confidence 356777888887765 45687 8999999999999864
No 36
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=75.84 E-value=4.3 Score=34.47 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=46.3
Q ss_pred CCCCch-HHHHHHHHHHHcCCc----eehh-h-hhhhcCCCHHHHHHHHHHHHhhcCCceEecc--CCcEEEE
Q 023574 77 DKLPAD-VRNRAMDAVDACNRR----VTIG-D-VAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDVLYV 140 (280)
Q Consensus 77 ~~l~~~-~~~~im~Ave~lg~R----vTvG-D-VAa~aGL~L~~Ae~aL~aLAsD~~GhLqVse--sGEIlYv 140 (280)
-+++++ ...+|++.++..++. +|.. + +|.+-|.+..-|++.|..+-.+ |.|=+++ +| +-|-
T Consensus 93 ~~~~~d~~~~~il~~~~~~~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~--G~l~~D~~~~G-~~y~ 162 (169)
T 1u5t_B 93 TSEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDE--GDLLIDKQLSG-IYYY 162 (169)
T ss_dssp ESSCSHHHHHHHHHHHHHSCSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH--TSEEEEECSSC-EEEE
T ss_pred eCCChhHHHHHHHHHHHhcCCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCEEEECCCCc-ceEE
Confidence 445554 447889999988778 9999 9 9999999999999999986654 5555554 46 4443
No 37
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=75.55 E-value=6 Score=29.43 Aligned_cols=59 Identities=10% Similarity=0.178 Sum_probs=45.6
Q ss_pred CCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 79 l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
|....|-+|+..+-..| ..|++|+|...|++...+-+-|..|... -++...+|.-+|..
T Consensus 24 L~~~~Rl~IL~~l~~~~-~~~~~ela~~l~is~stvs~hL~~L~~~---lv~~~~~gr~~~y~ 82 (99)
T 2zkz_A 24 MAHPMRLKIVNELYKHK-ALNVTQIIQILKLPQSTVSQHLCKMRGK---VLKRNRQGLEIYYS 82 (99)
T ss_dssp HCSHHHHHHHHHHHHHS-CEEHHHHHHHHTCCHHHHHHHHHHHBTT---TBEEEEETTEEEEE
T ss_pred hCCHHHHHHHHHHHHCC-CcCHHHHHHHHCcCHHHHHHHHHHHHHH---hhhheEeCcEEEEE
Confidence 34466788887766554 5999999999999999999999988765 66666677655544
No 38
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=74.81 E-value=11 Score=25.08 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEecc-CCcEEEE
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSD-EGDVLYV 140 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~a-----GL~L~~Ae~aL~aLAsD~~GhLqVse-sGEIlYv 140 (280)
.|..++..+-+.+..+|+.|++..- +++...+.+.|..+ |-+++.. +|...|.
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l-----g~v~~~~~~~~~~Y~ 63 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL-----HLVKVPTNNGSYKYS 63 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH-----TCEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc-----CCEEEecCCCceeee
Confidence 4455555454557789999999999 99999999999844 3456654 4555554
No 39
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=74.63 E-value=5 Score=31.74 Aligned_cols=42 Identities=7% Similarity=0.276 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
+.+.+|++++.+. ++.|..|+|.+.|++...+.+-|..|...
T Consensus 7 ~~~~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (151)
T 2cyy_A 7 EIDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp HHHHHHHHHHHHC-TTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3466889988775 58999999999999999999999999877
No 40
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=74.33 E-value=5.9 Score=30.90 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=45.7
Q ss_pred chHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 81 ~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
...+.+|+.++.+ +..|++|+|...|++...+-+.|..|-. .|-++...+|.-+|..
T Consensus 45 ~~~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~--~Glv~~~~~gr~~~y~ 101 (122)
T 1r1t_A 45 DPNRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRN--LRLVSYRKQGRHVYYQ 101 (122)
T ss_dssp CHHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCCEEEEE
Confidence 3456678888863 5689999999999999999999999987 6777777777665554
No 41
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=74.05 E-value=21 Score=25.28 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=43.9
Q ss_pred CchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc---CCcEEEE
Q 023574 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD---EGDVLYV 140 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVse---sGEIlYv 140 (280)
....+-+|+..+.+.+ ..|+.|+|...|++...+-+.|..|..+ |-++... +|.-.|+
T Consensus 14 ~~~~~~~iL~~L~~~~-~~~~~ela~~l~is~~tvs~~l~~L~~~--gli~~~~~~~~~r~~~~ 74 (100)
T 1ub9_A 14 GNPVRLGIMIFLLPRR-KAPFSQIQKVLDLTPGNLDSHIRVLERN--GLVKTYKVIADRPRTVV 74 (100)
T ss_dssp HSHHHHHHHHHHHHHS-EEEHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEEEECSSSCEEEE
T ss_pred CChHHHHHHHHHHhcC-CcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEecCCCcceEEE
Confidence 3456778888887654 6999999999999999999999999877 5555333 4544433
No 42
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=73.44 E-value=13 Score=29.10 Aligned_cols=61 Identities=13% Similarity=0.142 Sum_probs=48.2
Q ss_pred chHHHHHHHHHHHcCCceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 81 ADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 81 ~~~~~~im~Ave~lg~RvTvGDVAa~a-----GL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
...|..|++++.+.+.-+|+.||.... ++++..+=+.|..|+...=-+=-...+|...|..
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~~ 75 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYRR 75 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEEEe
Confidence 346788999999988899999999877 8999999999999987654332223457788875
No 43
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=73.39 E-value=15 Score=27.42 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~ 143 (280)
..+-+|+.++.+ +..|+.|+|...|++...+-+.|..|-. -|-+....+|.-+|..+.
T Consensus 32 ~~~~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~--~Glv~~~~~~r~~~~~~~ 89 (119)
T 2lkp_A 32 PSRLMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRN--LGLVVGDRAGRSIVYSLY 89 (119)
T ss_dssp HHHHHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHH--HCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEecCCEEEEEEc
Confidence 456788888887 4689999999999999999999999988 566666666665554433
No 44
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=73.25 E-value=28 Score=26.39 Aligned_cols=47 Identities=9% Similarity=0.158 Sum_probs=37.5
Q ss_pred HHHHHHHHH---cCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 023574 85 NRAMDAVDA---CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (280)
Q Consensus 85 ~~im~Ave~---lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVse 133 (280)
..+++++.. .++.+|+.|+|...|++...+.+.|..|..+ |-++...
T Consensus 16 ~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~--Gli~r~~ 65 (139)
T 2x4h_A 16 FSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEK--GLVKKKE 65 (139)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHC--CCEEecC
Confidence 344555543 4788999999999999999999999999887 6666554
No 45
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=73.19 E-value=7.5 Score=27.73 Aligned_cols=47 Identities=13% Similarity=0.134 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 84 ~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
+-.++..+-+.++.+|+.|+|...|++...+.+.|..|... |-++..
T Consensus 23 ~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~--g~v~~~ 69 (109)
T 2d1h_A 23 DVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIEL--GLVVRT 69 (109)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCeEee
Confidence 34455555555677999999999999999999999999665 445443
No 46
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=72.71 E-value=14 Score=28.33 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=52.0
Q ss_pred CchHHHHHHHHHHHcCCceehhhhhhhcC-CCHHHHHHHHHHHHhhcCCceEeccC-CcEEEEc
Q 023574 80 PADVRNRAMDAVDACNRRVTIGDVAGKAG-LKLNEAQKALQALAADTDGFLEVSDE-GDVLYVF 141 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg~RvTvGDVAa~aG-L~L~~Ae~aL~aLAsD~~GhLqVses-GEIlYvF 141 (280)
+.++..+|++.+++....+|-.|+....+ ++.++--++++.|.+ .|.|++-.+ |.++|..
T Consensus 12 ~~~ie~~IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~--~gkiel~K~~~~liYr~ 73 (81)
T 2dk8_A 12 PVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLS--MGQLDLLRSNTGLLYRI 73 (81)
T ss_dssp HHHHHHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHH--HTSEEEEECSSSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH--cCCeEEEecCCeEEEEe
Confidence 67889999999999999999999998766 599999999999998 477777776 6688865
No 47
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=72.53 E-value=5.5 Score=31.83 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHc--CCceehhhhhhhcCCC--HHHHHHHHHH--HHhhcCCceEeccCCcEE
Q 023574 82 DVRNRAMDAVDAC--NRRVTIGDVAGKAGLK--LNEAQKALQA--LAADTDGFLEVSDEGDVL 138 (280)
Q Consensus 82 ~~~~~im~Ave~l--g~RvTvGDVAa~aGL~--L~~Ae~aL~a--LAsD~~GhLqVsesGEIl 138 (280)
+.+.++.+++.+. |.-+|-||||...|.+ ...+-.+|.. ++....||==|..+|.+-
T Consensus 3 ~F~~~V~~~l~~IP~G~v~TYg~iA~~~G~p~aaRaVG~Al~~Np~~~~iPcHRVv~s~G~l~ 65 (108)
T 2kif_A 3 QFLVQIFAVIHQIPKGKVSTYGEIAKMAGYPGYARHVGKALGNLPEGSKLPWFRVINSQGKIS 65 (108)
T ss_dssp HHHHHHHHHHTTCCTTCBEEHHHHHHHHTCTTCHHHHHHHHHHSCTTCSSCCTTEECTTSBCS
T ss_pred HHHHHHHHHHhcCCCCCcEeHHHHHHHhCCCCcHHHHHHHHHhCCCCCCCCCceeECCCCCCC
Confidence 5788999999998 6678999999999984 4555555544 344579999999999984
No 48
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=72.25 E-value=6.5 Score=30.88 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
+...+|++++.+ +++.|..|+|.+.|++...+.+.|..|..+
T Consensus 9 ~~d~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 9 RVDMQLVKILSE-NSRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp HHHHHHHHHHHH-CTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345688998876 578999999999999999999999999876
No 49
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=71.89 E-value=6.3 Score=31.02 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
+.+.+|++++.+. ++.|..|+|.+.|++...+.+.|..|...
T Consensus 7 ~~~~~iL~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 48 (150)
T 2w25_A 7 DIDRILVRELAAD-GRATLSELATRAGLSVSAVQSRVRRLESR 48 (150)
T ss_dssp HHHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3466889998764 58999999999999999999999999775
No 50
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=71.85 E-value=6.1 Score=30.48 Aligned_cols=58 Identities=22% Similarity=0.391 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc-EEEEc
Q 023574 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVF 141 (280)
Q Consensus 81 ~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGE-IlYvF 141 (280)
...+.+|+..+.+. +..|++|+|...|++...+-+-|..|. ..|-++...+|. +.|.-
T Consensus 41 ~~~rl~IL~~L~~~-~~~s~~eLa~~l~is~stvs~~L~~L~--~~Glv~~~~~gr~~~y~l 99 (122)
T 1u2w_A 41 DENRAKITYALCQD-EELCVCDIANILGVTIANASHHLRTLY--KQGVVNFRKEGKLALYSL 99 (122)
T ss_dssp SHHHHHHHHHHHHS-SCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC----CCEEEE
T ss_pred CHHHHHHHHHHHHC-CCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEECCEEEEEE
Confidence 34566888888764 458999999999999999999999998 357777766665 34443
No 51
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=71.45 E-value=6 Score=32.59 Aligned_cols=42 Identities=7% Similarity=0.276 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
+.+.+|++++.+. ++.|..|+|.+.|++...+.+-|..|-.+
T Consensus 27 ~~d~~IL~~L~~~-~~~s~~eLA~~lglS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 27 EIDKKIIKILQND-GKAPLREISKITGLAESTIHERIRKLRES 68 (171)
T ss_dssp HHHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4566889998775 58999999999999999999999999876
No 52
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=70.95 E-value=5 Score=31.44 Aligned_cols=42 Identities=12% Similarity=0.267 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
+.+.+|++++.+ +++.|..|+|.+.|++...+.+.|..|...
T Consensus 3 ~~~~~il~~L~~-~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 44 (150)
T 2pn6_A 3 EIDLRILKILQY-NAKYSLDEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp HHHHHHHHHHTT-CTTSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 356788998865 458999999999999999999999999877
No 53
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=69.56 E-value=7.7 Score=30.45 Aligned_cols=42 Identities=10% Similarity=0.194 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
+.+.+|++++.+. ++.|..|+|.+.|++...+.+.|..|...
T Consensus 5 ~~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 5 QIDLNIIEELKKD-SRLSMRELGRKIKLSPPSVTERVRQLESF 46 (144)
T ss_dssp HHHHHHHHHHHHC-SCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3456889988764 67999999999999999999999999776
No 54
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=69.54 E-value=13 Score=26.34 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeccCCcEEE
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSDEGDVLY 139 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aG----L~L~~Ae~aL~aLAsD~~GhLqVsesGEIlY 139 (280)
..+..||+++-+ ++.+|+.||+...+ ++...+-.-|..|..+ |.++...+|.-.+
T Consensus 9 ~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~k--Glv~r~~~gr~~~ 67 (82)
T 1p6r_A 9 DAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKK--GALNHHKEGRVFV 67 (82)
T ss_dssp HHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHT--TSEEEEEETTEEE
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHC--CCeEEEecCCEEE
Confidence 466789999988 56899999999875 7888998888888775 5666666666433
No 55
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=69.29 E-value=7.5 Score=30.64 Aligned_cols=42 Identities=10% Similarity=0.218 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
+.+.+|++++.+. ++.|..|+|.+.|++...+.+.|..|...
T Consensus 8 ~~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 8 NLDRGILEALMGN-ARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp HHHHHHHHHHHHC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3456889988765 68999999999999999999999999876
No 56
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=69.04 E-value=9.9 Score=28.91 Aligned_cols=53 Identities=11% Similarity=0.116 Sum_probs=43.2
Q ss_pred CchHHHHHHHHHHHcCC--ceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC
Q 023574 80 PADVRNRAMDAVDACNR--RVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg~--RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVses 134 (280)
.++.-+++++++..++. ..|.-++|-+-|++..++.+.|-.|..+ |-|.+..+
T Consensus 10 ~~~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kk--G~V~~~~~ 64 (75)
T 1sfu_A 10 DAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKE--DTVKMVPS 64 (75)
T ss_dssp SHHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEECC
T ss_pred hHHHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHC--CCEecCCC
Confidence 35888999999999864 4899999999999999999999999875 44444433
No 57
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=68.82 E-value=7.6 Score=29.86 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
.+.+|++++.+. ++.|..|+|.+.|++...+.+.|..|..+
T Consensus 5 ~~~~il~~L~~~-~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 5 RDKIILEILEKD-ARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 456888888754 57899999999999999999999999876
No 58
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=68.20 E-value=3.8 Score=31.13 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHH----cCC-ceehhhhhhhcCCCHH
Q 023574 82 DVRNRAMDAVDA----CNR-RVTIGDVAGKAGLKLN 112 (280)
Q Consensus 82 ~~~~~im~Ave~----lg~-RvTvGDVAa~aGL~L~ 112 (280)
..+++|++|..+ .|+ .+|+.|||.++|++..
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~ 47 (177)
T 3kkc_A 12 KTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRS 47 (177)
T ss_dssp HHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHh
Confidence 345666666554 587 8999999999998864
No 59
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=68.00 E-value=4 Score=32.16 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=24.0
Q ss_pred HHHHHHH----HHHHcCCceehhhhhhhcCCCHHH
Q 023574 83 VRNRAMD----AVDACNRRVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 83 ~~~~im~----Ave~lg~RvTvGDVAa~aGL~L~~ 113 (280)
.+++|++ .+.+.|+.+|+.|||.++|++...
T Consensus 14 ~r~~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~t 48 (196)
T 2qwt_A 14 NRARVLEVAYDTFAAEGLGVPMDEIARRAGVGAGT 48 (196)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHH
Confidence 3455555 455679999999999999998754
No 60
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=67.78 E-value=5.8 Score=34.46 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=41.5
Q ss_pred HHHHHHHHHc---CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 85 NRAMDAVDAC---NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 85 ~~im~Ave~l---g~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
.|.++.++-+ +...|+.|+|.+.|++...+-+-|..|.. .|-|+-+++| -|.-
T Consensus 23 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~--~G~v~~~~~~--~Y~l 78 (260)
T 2o0y_A 23 TRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA--RSVLTSRADG--SYSL 78 (260)
T ss_dssp HHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH--TTSEEECTTS--CEEE
T ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEECCCC--eEEe
Confidence 4455555544 46899999999999999999999998876 5778777666 6766
No 61
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=67.67 E-value=2.6 Score=32.91 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=22.7
Q ss_pred hHHHHHHHHH----HHcCC-ceehhhhhhhcCCCH
Q 023574 82 DVRNRAMDAV----DACNR-RVTIGDVAGKAGLKL 111 (280)
Q Consensus 82 ~~~~~im~Av----e~lg~-RvTvGDVAa~aGL~L 111 (280)
..|++|++|. .+.|| .+|+.|||.++|++.
T Consensus 7 ~tRe~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~ 41 (178)
T 4hku_A 7 LSQEIILNMAEKIIYEKGMEKTTLYDIASNLNVTH 41 (178)
T ss_dssp CCHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHHHHhCcccccHHHHHHHhCcCH
Confidence 3466776655 45697 689999999999874
No 62
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=67.30 E-value=12 Score=33.71 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=52.7
Q ss_pred cccCCCCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec-cCCcEEEEcCc
Q 023574 74 VESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS-DEGDVLYVFPN 143 (280)
Q Consensus 74 v~~~~l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs-esGEIlYvFP~ 143 (280)
+.|.-|-.+++..|.+++.+.++.+|+.|+|.++|++..-.++=|..|++ -|-|++. +.|+-.|.=.+
T Consensus 20 ~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~--~gll~~~~~~~~~~y~~t~ 88 (353)
T 4a6d_A 20 MVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVS--LKLLKVETRGGKAFYRNTE 88 (353)
T ss_dssp HHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHH--CCCEEEeccCccceeeCCH
Confidence 34444556777888999988888899999999999999999888888876 4667665 45677787544
No 63
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=67.25 E-value=8.4 Score=31.64 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
+.+.+|++++.+. ++.|..|+|.+.|++...+.+.|..|..+
T Consensus 17 ~~d~~IL~~L~~~-~~~s~~eLA~~lglS~~tv~~~l~~L~~~ 58 (171)
T 2ia0_A 17 DLDRNILRLLKKD-ARLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp HHHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4556899999775 58999999999999999999999999766
No 64
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=67.18 E-value=9 Score=30.56 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
+.+.+|++++.+. ++.|..|+|.+.|++...+.+-|..|-..
T Consensus 10 ~~~~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 51 (162)
T 2p5v_A 10 KTDIKILQVLQEN-GRLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp HHHHHHHHHHHHC-TTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3456889988765 56999999999999999999999999776
No 65
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=66.84 E-value=6.7 Score=33.47 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHh
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAA 123 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAs 123 (280)
-+..|++.+++ .+.+|+.|+|..-|.|....++.|.+|.-
T Consensus 13 R~~~i~~~l~~-~~~~~~~~la~~~~vs~~TiRrDl~eL~~ 52 (190)
T 4a0z_A 13 RREAIRQQIDS-NPFITDHELSDLFQVSIQTIRLDRTYLNI 52 (190)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH-CCCEeHHHHHHHHCCCHHHHHHHHHHhcC
Confidence 34556666666 66899999999999999999999988753
No 66
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=66.19 E-value=18 Score=28.90 Aligned_cols=61 Identities=8% Similarity=0.042 Sum_probs=47.5
Q ss_pred chHHHHHHHHHHHcCCceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 81 ADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 81 ~~~~~~im~Ave~lg~RvTvGDVAa~a-----GL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
...|..|++++.+.+.-+|+.||.... ++++..+=+.|..|....=-+=-...+|...|..
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 86 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDF 86 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEEC
Confidence 456788999999988889999999876 8999999999999987643332222346777765
No 67
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=66.15 E-value=36 Score=29.06 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 85 ~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
-+|++++.+.+...|+.|+|.+.|++...+-+-|..|.. .|-++-+++| -|..
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~--~G~v~~~~~~--~Y~l 63 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE--KGFVLRKKDK--RYVP 63 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEECTTS--CEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEECCCC--cEEE
Confidence 457888877777899999999999999999999998877 4667665444 3554
No 68
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=65.71 E-value=3.9 Score=31.52 Aligned_cols=32 Identities=9% Similarity=0.211 Sum_probs=23.7
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
+.+.+|++| +.+.|+ .+|+.|||.++|++.-.
T Consensus 2 ~tr~~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgt 38 (179)
T 2eh3_A 2 GTKERILEVSKELFFEKGYQGTSVEEIVKRANLSKGA 38 (179)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHH
T ss_pred cHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHH
Confidence 445566554 556787 69999999999988643
No 69
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=65.71 E-value=7.4 Score=31.40 Aligned_cols=43 Identities=16% Similarity=0.370 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~ 125 (280)
+...+|++++.+ ++++|..|+|.+.|++...+.+-|..|-.+.
T Consensus 3 ~~d~~il~~L~~-~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQE-DSTLAVADLAKKVGLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTT-CSCSCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 345688888866 5688999999999999999999999998873
No 70
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=65.66 E-value=4.7 Score=31.42 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=23.0
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023574 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 86 ~im~Ave~lg~RvTvGDVAa~aGL~L~~A 114 (280)
..++.+.+.|+.+|+.|||.++|++....
T Consensus 23 aA~~lf~~~G~~~s~~~IA~~agvs~~tl 51 (194)
T 2q24_A 23 AAVRVFSEEGLDAHLERIAREAGVGSGTL 51 (194)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHTTCCHHHH
T ss_pred HHHHHHHhcCcCCCHHHHHHHhCCChHHH
Confidence 33455667899999999999999987653
No 71
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=65.58 E-value=6.1 Score=31.91 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHcCCceehhhhhhhcCC---CHHH-HHHHHHHHHhhc---CCceEecc
Q 023574 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGL---KLNE-AQKALQALAADT---DGFLEVSD 133 (280)
Q Consensus 81 ~~~~~~im~Ave~lg~RvTvGDVAa~aGL---~L~~-Ae~aL~aLAsD~---~GhLqVse 133 (280)
.++|++|+++++ +.-.|+.|+|...|+ +..+ +-..|..+|.-. |..|.|.+
T Consensus 10 ~T~Re~Ii~lL~--~~plta~ei~~~l~i~~~~~ke~Vy~hLeHIaksl~r~g~~L~v~p 67 (105)
T 2gmg_A 10 ATRREKIIELLL--EGDYSPSELARILDMRGKGSKKVILEDLKVISKIAKREGMVLLIKP 67 (105)
T ss_dssp HHHHHHHHHHTT--TSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHHHHTTTTEEEEECC
T ss_pred ccHHHHHHHHHH--cCCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 578999999997 789999999999999 7777 888887777653 44666654
No 72
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=65.10 E-value=4.7 Score=30.70 Aligned_cols=32 Identities=9% Similarity=0.158 Sum_probs=23.9
Q ss_pred hHHHHHHHHH----HHcCC-ceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~Av----e~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
+.+++|++|. .+.|+ .+|+.|||.++|++...
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t 45 (195)
T 3ppb_A 9 TKKQAILETALQLFVSQGFHGTSTATIAREAGVATGT 45 (195)
T ss_dssp CHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHH
T ss_pred hHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhH
Confidence 4556666554 55585 79999999999998754
No 73
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=65.09 E-value=5.5 Score=35.14 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=41.2
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 86 ~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
+|++++.+.+..+|+.|+|.+.|++...+-+-|..|... |-|+-+++| -|.-
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~--G~v~~~~~~--~Y~L 85 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTEL--DLLARSADG--TLRI 85 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHT--TSEEECTTS--EEEE
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEECCCC--cEEe
Confidence 468888888888999999999999999999999999865 667766655 4766
No 74
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=64.16 E-value=23 Score=28.09 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~a-----GL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
..|..|++++.+.+.-+|+.||.... ++++..+=+.|..|+...=-+=-..++|...|..
T Consensus 14 ~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~ 78 (139)
T 3mwm_A 14 RQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRR 78 (139)
T ss_dssp HHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEE
Confidence 45788899999988899999998764 7999999999999988754443333467788876
No 75
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=64.14 E-value=7.9 Score=32.10 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 85 ~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
.-|.+.+++.|+-.|+.|+|..-|++-..+.+-|.+|..+
T Consensus 12 ~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~ 51 (196)
T 3k2z_A 12 LFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKK 51 (196)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHC
Confidence 3445556678999999999999999999999999998765
No 76
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=62.93 E-value=4.9 Score=31.15 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHcCC-ceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDAVDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~Ave~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
.+-...++.+.+.|+ .+|+.|||.++|++...
T Consensus 11 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t 43 (192)
T 2zcm_A 11 KIIDNAITLFSEKGYDGTTLDDISKSVNIKKAS 43 (192)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCChHH
Confidence 344455666778897 69999999999998654
No 77
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=62.60 E-value=4.9 Score=31.19 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=23.8
Q ss_pred HHHHHHH----HHHHcCCc-eehhhhhhhcCCCHHHH
Q 023574 83 VRNRAMD----AVDACNRR-VTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 83 ~~~~im~----Ave~lg~R-vTvGDVAa~aGL~L~~A 114 (280)
.+++|++ .+.+.|+. +|+.|||.++|++....
T Consensus 4 tr~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~ 40 (190)
T 3vpr_A 4 TRDRILEEAAKLFTEKGYEATSVQDLAQALGLSKAAL 40 (190)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHH
T ss_pred hHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHH
Confidence 3455544 46778875 89999999999987543
No 78
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=62.39 E-value=44 Score=24.70 Aligned_cols=47 Identities=9% Similarity=0.125 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.+-.++..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 32 ~~~~iL~~l~~~~-~~~~~ela~~l~is~~~vs~~l~~L~~~--gli~~~ 78 (142)
T 3bdd_A 32 TRYSILQTLLKDA-PLHQLALQERLQIDRAAVTRHLKLLEES--GYIIRK 78 (142)
T ss_dssp HHHHHHHHHHHHC-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEec
Confidence 3456888888765 5999999999999999999999999887 455443
No 79
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=62.35 E-value=9.5 Score=32.74 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 86 ~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
+|++++.+.+...|+.|+|...|++...+-+-|..|... |.|+-++++. -|.-
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~--G~v~~~~~~~-~Y~l 62 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEE--FLVEALGPAG-GFRL 62 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTT--TSEEECGGGC-EEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEeCCCC-eEEE
Confidence 567777777778999999999999999999999988764 6666654422 3554
No 80
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=62.03 E-value=17 Score=24.39 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 86 ~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
++..++++.| |+.++|...|++-...-+-+. ...+-.|++++.|+.+|.-
T Consensus 5 ~l~~~~~~~g---s~~~~A~~lgis~~~vs~~~~---~~~~~~l~~t~~G~~~~~~ 54 (67)
T 2pij_A 5 PLSKYLEEHG---TQSALAAALGVNQSAISQMVR---AGRSIEITLYEDGRVEANE 54 (67)
T ss_dssp EHHHHHHHTC---CHHHHHHHHTSCHHHHHHHHH---TTCCEEEEECTTSCEEEEE
T ss_pred HHHHHHHHcC---CHHHHHHHHCcCHHHHHHHHc---CCCCCCeEEccCceEehHh
Confidence 4666777777 899999999999777655542 1223344449999998865
No 81
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=61.32 E-value=6 Score=30.48 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=24.9
Q ss_pred chHHHHHHHH----HHHcCCceehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDA----VDACNRRVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~RvTvGDVAa~aGL~L~~ 113 (280)
.+.+.+|++| +.+.|+.+|+.|||.++|++...
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~t~~~IA~~aGvs~~t 44 (190)
T 3jsj_A 8 QSPRERLLEAAAALTYRDGVGIGVEALCKAAGVSKRS 44 (190)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHH
T ss_pred chHHHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHH
Confidence 3456666555 55679889999999999988643
No 82
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=61.17 E-value=5.5 Score=31.19 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=24.8
Q ss_pred chHHHHHHHHHH----HcCCc-eehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDAVD----ACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~Ave----~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
.+.+.+|++|.. +.|+. +|+.|||.++|++...
T Consensus 16 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t 53 (218)
T 3gzi_A 16 TQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGL 53 (218)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHH
T ss_pred hHHHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHH
Confidence 346677766655 45985 9999999999988654
No 83
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=61.12 E-value=13 Score=28.53 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=35.0
Q ss_pred HHHHHHHHc--CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 86 RAMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 86 ~im~Ave~l--g~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
+++..+.+. +..+|+.|+|.+.|++...+++.|..|... |-++..
T Consensus 13 ~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~--Glv~~~ 59 (129)
T 2y75_A 13 TIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNA--GLVKSI 59 (129)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHC--CceEec
Confidence 455555554 577999999999999999999999999874 345443
No 84
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=60.69 E-value=11 Score=38.01 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=50.0
Q ss_pred chHHHHHHHHHHHcCCceehhhhhhhcC-------CCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcch
Q 023574 81 ADVRNRAMDAVDACNRRVTIGDVAGKAG-------LKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (280)
Q Consensus 81 ~~~~~~im~Ave~lg~RvTvGDVAa~aG-------L~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~~f 145 (280)
.....+|++.++. .+.+|+.++|.+-| .+..-|++.|..+. ..|.|=++++.+=+|.||.-|
T Consensus 493 ~~~~~~il~l~~~-~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e--~eG~l~rDd~~~G~~yypNlf 561 (566)
T 1w7p_D 493 DVVKEKLVDLIGD-NPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCV--DEGDLLIDKQLSGIYYYKNSY 561 (566)
T ss_dssp HHHHHHHHHHHTT-STTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHH--HTTSEEEEEETTEEEEEECCS
T ss_pred hHHHHHHHHHHHh-cCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHH--HcCCEEEECCCCceEEehhhc
Confidence 4677888888875 67999999999999 99999999998754 457777777655689998544
No 85
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=60.35 E-value=4.9 Score=32.13 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=25.2
Q ss_pred CchHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 80 PADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 80 ~~~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
+++.+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 3 ~~~tr~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t 41 (228)
T 3nnr_A 3 TMKTRDKILLSSLELFNDKGERNITTNHIAAHLAISPGN 41 (228)
T ss_dssp -CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred CchHHHHHHHHHHHHHHHhChhhcCHHHHHHHhCCCCcc
Confidence 34566677665 5567886 9999999999988653
No 86
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=59.91 E-value=7.3 Score=28.63 Aligned_cols=41 Identities=7% Similarity=0.130 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHcCC-ceehhhhhhhcCCCHHHHHHHHHHHH
Q 023574 82 DVRNRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALA 122 (280)
Q Consensus 82 ~~~~~im~Ave~lg~-RvTvGDVAa~aGL~L~~Ae~aL~aLA 122 (280)
..=..|+..+...|| +.++.++|...|++.+++++.|..|.
T Consensus 32 ~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~lQ 73 (76)
T 2k9l_A 32 ELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVL 73 (76)
T ss_dssp HHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHh
Confidence 344668889999999 78999999999999999999998764
No 87
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=59.68 E-value=5.1 Score=31.23 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=24.2
Q ss_pred HHHHHHHH----HHHcCCceehhhhhhhcCCCHHH
Q 023574 83 VRNRAMDA----VDACNRRVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 83 ~~~~im~A----ve~lg~RvTvGDVAa~aGL~L~~ 113 (280)
.+.+|++| +.+.|+.+|+.|||.++|++...
T Consensus 17 ~r~~Il~aA~~lf~~~G~~~s~~~Ia~~agvs~~t 51 (199)
T 2rek_A 17 NYDRIIEAAAAEVARHGADASLEEIARRAGVGSAT 51 (199)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCchHH
Confidence 35566554 55679999999999999998754
No 88
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=59.17 E-value=13 Score=28.08 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
.+-.|+..+...+ +|++|+|...|++...+-+.|..|..+
T Consensus 39 ~~~~iL~~l~~~~--~t~~eLa~~l~~s~~tvs~~l~~L~~~ 78 (146)
T 3tgn_A 39 TQEHILMLLSEES--LTNSELARRLNVSQAAVTKAIKSLVKE 78 (146)
T ss_dssp HHHHHHHHHTTCC--CCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4567888888776 999999999999999999999999876
No 89
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=59.12 E-value=7.6 Score=29.40 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=24.1
Q ss_pred hHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
+.+++|++| +.+.|+. +|+.|||.++|++...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 44 (188)
T 3qkx_A 8 DLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGT 44 (188)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcch
Confidence 445566555 4567986 9999999999998654
No 90
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=58.84 E-value=51 Score=24.23 Aligned_cols=46 Identities=7% Similarity=0.133 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++.++.+.+ .+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 39 ~~~~iL~~l~~~~-~~t~~ela~~l~~~~~tvs~~l~~L~~~--glv~r 84 (140)
T 2nnn_A 39 TQWAALVRLGETG-PCPQNQLGRLTAMDAATIKGVVERLDKR--GLIQR 84 (140)
T ss_dssp HHHHHHHHHHHHS-SBCHHHHHHHTTCCHHHHHHHHHHHHHT--TCEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 4567888988776 7999999999999999999999999987 44544
No 91
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=58.79 E-value=7.4 Score=29.89 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=23.4
Q ss_pred HHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 83 VRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 83 ~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
.+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 15 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 50 (203)
T 3f1b_A 15 REQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPM 50 (203)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHH
Confidence 34556554 566697 89999999999988654
No 92
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=58.21 E-value=53 Score=28.63 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEE
Q 023574 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLY 139 (280)
Q Consensus 84 ~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlY 139 (280)
...+...++..+..++..|++..+|++.++.++.|..|.+... -+.+..+++..|
T Consensus 4 ~~~l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~-~~~~~~~~~~~~ 58 (258)
T 1lva_A 4 EKILAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQ-VTLLRVENDLYA 58 (258)
T ss_dssp HHHHHHHHHTCTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS-EEEEEETTEEEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCC-EEEeccCCccEE
Confidence 4567778888888887799999999999999988888875443 555544344334
No 93
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=58.13 E-value=19 Score=27.32 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcC-CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceE
Q 023574 83 VRNRAMDAVDACN-RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE 130 (280)
Q Consensus 83 ~~~~im~Ave~lg-~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLq 130 (280)
.+..|++.++..| ..+|..|+|.+++|+...+-..|..|-.. |-++
T Consensus 21 ~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~k--glIk 67 (91)
T 2dk5_A 21 QEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESK--KLIK 67 (91)
T ss_dssp SHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHT--TSEE
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEE
Confidence 4578899999865 48999999999999999999999999664 5555
No 94
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=57.89 E-value=16 Score=30.20 Aligned_cols=47 Identities=6% Similarity=0.024 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 84 ~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
+.+|++.+.+.+..+|+.|+|.+-|+|...+++.|..|-. .|-.++.
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~-~G~~I~~ 69 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS-LGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH-HTCCCEE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-CCCeEEE
Confidence 4567888877766799999999999999999999999976 3332544
No 95
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=57.72 E-value=6.7 Score=29.97 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=25.0
Q ss_pred hHHHHHH----HHHHHcCC-ceehhhhhhhcCCCHHHH
Q 023574 82 DVRNRAM----DAVDACNR-RVTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 82 ~~~~~im----~Ave~lg~-RvTvGDVAa~aGL~L~~A 114 (280)
+.+.+|+ +.+.+.|+ .+|+.|||.++|++....
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~ 45 (206)
T 3dew_A 8 DCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMI 45 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHH
Confidence 3455554 45677887 899999999999997653
No 96
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=57.71 E-value=42 Score=32.56 Aligned_cols=63 Identities=19% Similarity=0.138 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcchHHHHh
Q 023574 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLA 150 (280)
Q Consensus 85 ~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~~fRs~l~ 150 (280)
.+|.+.+-+. ++.|+.+++..++|+..+++.+|..|-+..=-.-...++|.+.|.+ |+..++.
T Consensus 22 ~~V~~~Ll~~-G~ltL~~I~~~t~L~~~~Vk~~L~vLIQh~lV~~~~~~~~~~~Y~~--~~~~il~ 84 (534)
T 2xub_A 22 EKIGVHLIRT-GSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHKRGVVEYEA--QCSRVLR 84 (534)
T ss_dssp HHHHHHHHHH-CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE--CHHHHHG
T ss_pred HHHHHHHHhc-CCcCHHHHHHHhCCCHHHHHHHHHHHHhcCCeeEEeCCCCcEEEEE--ChhhHHH
Confidence 3555566554 7899999999999999999999999998854444445678888888 6766653
No 97
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=57.57 E-value=20 Score=29.38 Aligned_cols=49 Identities=27% Similarity=0.404 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCC-HHHHHHHHHHHHhhcCCceEec
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLK-LNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~-L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
++-++|-++.++.|...|..|+|.+.|++ ...+.+-+..|+.. |.|+++
T Consensus 10 ~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~--~~l~~~ 59 (202)
T 1jhf_A 10 EVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARK--GVIEIV 59 (202)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHHHHC--CCceeC
Confidence 34567777777888888999999999999 88888888888874 466654
No 98
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=57.57 E-value=7.5 Score=29.76 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCc-eehhhhhhhcCCCHHH
Q 023574 86 RAMDAVDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 86 ~im~Ave~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
..++.+.+.|+. +|+.|||.++|++...
T Consensus 19 aa~~lf~~~G~~~~tv~~Ia~~agvs~~t 47 (196)
T 3he0_A 19 AAEQLIAESGFQGLSMQKLANEAGVAAGT 47 (196)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHhCcccCCHHHHHHHhCCCcch
Confidence 334456677975 9999999999988654
No 99
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=57.23 E-value=29 Score=26.01 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 41 ~~~~iL~~l~~~~-~~~~~~la~~l~~~~~tvs~~l~~L~~~--glv~r 86 (147)
T 1z91_A 41 PQYLALLLLWEHE-TLTVKKMGEQLYLDSGTLTPMLKRMEQQ--GLITR 86 (147)
T ss_dssp HHHHHHHHHHHHS-EEEHHHHHHTTTCCHHHHHHHHHHHHHH--TSEEC
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCCcCcHHHHHHHHHHC--CCEEe
Confidence 4567888888876 7999999999999999999999999988 55544
No 100
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=57.22 E-value=7.7 Score=29.98 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=23.4
Q ss_pred HHHHHH----HHHHHcCCc-eehhhhhhhcCCCHHH
Q 023574 83 VRNRAM----DAVDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 83 ~~~~im----~Ave~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
.+++|+ +.+.+.|+. +|+.|||.++|++...
T Consensus 15 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 50 (220)
T 3lhq_A 15 TRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGA 50 (220)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcee
Confidence 345554 445678876 9999999999998654
No 101
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=56.79 E-value=30 Score=27.17 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHcC-Cceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 81 ADVRNRAMDAVDACN-RRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 81 ~~~~~~im~Ave~lg-~RvTvGDVAa~a-----GL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
...|..|++++.+.+ .-+|+.||.... ++++..+=+.|..|....=-+=-..++|...|..
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 83 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFEL 83 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 456788999999887 789999999876 8999999999999988754332222357777875
No 102
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=56.20 E-value=15 Score=28.05 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++..+...+..+|+.|+|...|++...+-+.|..|..+ |-++-
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~--Glv~r 86 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEER--GLVVR 86 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTT--TSEEC
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHC--CCEEe
Confidence 556788899888878999999999999999999999999876 55544
No 103
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=56.11 E-value=37 Score=27.27 Aligned_cols=62 Identities=6% Similarity=0.085 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHHcCCceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 80 PADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg~RvTvGDVAa~a-----GL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
....|..|++++.+.+.-+|+.||.... ++++..+=+.|..|....=-+=-...+|...|..
T Consensus 25 ~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 91 (150)
T 2xig_A 25 NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSGRRYEI 91 (150)
T ss_dssp CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 3456778899999988889999998876 8999999999999988754332233457777775
No 104
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=56.09 E-value=59 Score=24.03 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec---cCCcEEEEcCcc
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS---DEGDVLYVFPNN 144 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs---esGEIlYvFP~~ 144 (280)
..-+++..+....+.+|+.|+|...|++...+-+.|..|... |-++.. ++....|+.+.+
T Consensus 27 ~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~--G~v~r~~~~~d~r~~~~~~~~ 89 (152)
T 1ku9_A 27 SVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEEL--GFVRKVWIKGERKNYYEAVDG 89 (152)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEECCTTCSSCEEEECCH
T ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEecCCCceEEEeecch
Confidence 345677777534567999999999999999999999988775 556654 345677887754
No 105
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=55.81 E-value=16 Score=27.61 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=31.6
Q ss_pred CCCCchHHHHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHH
Q 023574 77 DKLPADVRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKAL 118 (280)
Q Consensus 77 ~~l~~~~~~~im~Ave~l-g~RvTvGDVAa~aGL~L~~Ae~aL 118 (280)
+.+..+.-.++++.+++. ....|+.|+|...|++...-++.+
T Consensus 2 ~~~~~~~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~f 44 (120)
T 3mkl_A 2 NALQPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKL 44 (120)
T ss_dssp ---CCCHHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHH
Confidence 445666778888888877 668999999999999987765544
No 106
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=55.60 E-value=8.5 Score=29.72 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=24.0
Q ss_pred chHHHHHHH----HHHHcCC-ceehhhhhhhcCCCHH
Q 023574 81 ADVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLN 112 (280)
Q Consensus 81 ~~~~~~im~----Ave~lg~-RvTvGDVAa~aGL~L~ 112 (280)
.+.+.+|++ .+.+.|+ .+|+.|||.++|++..
T Consensus 11 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~ 47 (202)
T 3lwj_A 11 KERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTG 47 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCch
Confidence 345555554 4667897 6999999999998864
No 107
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=55.56 E-value=8.5 Score=29.43 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=22.3
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKL 111 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L 111 (280)
+.+.+|++| +.+.|+ .+|+.|||.++|++.
T Consensus 7 ~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~ 41 (180)
T 2fd5_A 7 QTRARILGAATQALLERGAVEPSVGEVMGAAGLTV 41 (180)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCG
T ss_pred cCHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCc
Confidence 344555554 556788 799999999999864
No 108
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=55.48 E-value=18 Score=28.59 Aligned_cols=48 Identities=10% Similarity=0.156 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.+-.++..+...++.+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~--GlV~r~ 101 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDK--GLISRQ 101 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHC--CCEEee
Confidence 456789999887788999999999999999999999999876 555543
No 109
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=55.47 E-value=9.5 Score=29.23 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=24.5
Q ss_pred hHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
+.+.+|++| +.+.|+. +|+.|||..+|++...
T Consensus 17 ~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t 53 (206)
T 3kz9_A 17 KRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVAT 53 (206)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHH
Confidence 456666655 5566987 9999999999998654
No 110
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=55.38 E-value=11 Score=34.99 Aligned_cols=40 Identities=8% Similarity=0.229 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHh
Q 023574 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAA 123 (280)
Q Consensus 84 ~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAs 123 (280)
+..|++.+.+.+..+|+.|++..||+..+|+-.+|+.|-.
T Consensus 195 ~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l~~ 234 (276)
T 3to7_A 195 SDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTLNI 234 (276)
T ss_dssp HHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 4678889999999999999999999999999999987743
No 111
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=55.18 E-value=62 Score=24.04 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.+-.++..+. ++.+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 38 ~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~~--glv~r~ 83 (146)
T 2gxg_A 38 LDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEEM--GLVVRV 83 (146)
T ss_dssp HHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHHC--CCEEee
Confidence 4567788887 778999999999999999999999999987 555543
No 112
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=54.98 E-value=62 Score=23.97 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++..+...++.+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 38 ~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~--glv~r 84 (146)
T 2fbh_A 38 ARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQ--GLVRR 84 (146)
T ss_dssp THHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC--CCeee
Confidence 446788888456678999999999999999999999999876 44443
No 113
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=54.76 E-value=7.9 Score=29.42 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=24.0
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
+.+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 46 (196)
T 3col_A 10 NKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSN 46 (196)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHH
Confidence 445566555 555687 79999999999998754
No 114
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=54.74 E-value=21 Score=30.83 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHc---CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 83 VRNRAMDAVDAC---NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 83 ~~~~im~Ave~l---g~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.-.|.++.++.+ +...|+.|+|.+.|++...+.+-|..|.. .|.|+-+
T Consensus 12 s~~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~--~G~v~~~ 62 (257)
T 2g7u_A 12 SIERGFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK--LGYVAGS 62 (257)
T ss_dssp HHHHHHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEeC
Confidence 334555555554 46799999999999999999999999887 4556554
No 115
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=54.61 E-value=13 Score=26.94 Aligned_cols=44 Identities=7% Similarity=0.128 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHH-HHHHHHHHHhhcCCceEe
Q 023574 86 RAMDAVDACNRRVTIGDVAGKAGLKLNE-AQKALQALAADTDGFLEV 131 (280)
Q Consensus 86 ~im~Ave~lg~RvTvGDVAa~aGL~L~~-Ae~aL~aLAsD~~GhLqV 131 (280)
.++..+.+.++..|+.|+|...|++... +-+.|..|..+ |.++.
T Consensus 19 ~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~--Glv~~ 63 (95)
T 2pg4_A 19 PTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRA--GLVKE 63 (95)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHT--TSEEE
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHC--CCeec
Confidence 4566777878789999999999999999 88999999776 55553
No 116
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=54.60 E-value=62 Score=23.88 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHcCC-ceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023574 83 VRNRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALAADT 125 (280)
Q Consensus 83 ~~~~im~Ave~lg~-RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~ 125 (280)
.+-.++..+.+.++ .+|+.|+|...|++...+-+.|..|..+.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~G 78 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKK 78 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCC
Confidence 45678888988775 79999999999999999999999998873
No 117
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=54.48 E-value=8.8 Score=29.14 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=19.9
Q ss_pred HHHHHHHHcCC-ceehhhhhhhcCCCH
Q 023574 86 RAMDAVDACNR-RVTIGDVAGKAGLKL 111 (280)
Q Consensus 86 ~im~Ave~lg~-RvTvGDVAa~aGL~L 111 (280)
..++.+.+.|+ .+|+.|||.++|++.
T Consensus 14 aa~~l~~~~G~~~~t~~~Ia~~agvs~ 40 (191)
T 1sgm_A 14 TASRLSQLQGYHATGLNQIVKESGAPK 40 (191)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHCCCS
T ss_pred HHHHHHHHcCccccCHHHHHHHHCCCc
Confidence 33455667787 699999999999753
No 118
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=54.44 E-value=5.2 Score=34.86 Aligned_cols=51 Identities=14% Similarity=0.312 Sum_probs=38.6
Q ss_pred HHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC-CcEEEEc
Q 023574 87 AMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE-GDVLYVF 141 (280)
Q Consensus 87 im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVses-GEIlYvF 141 (280)
|++++.+.+...|+.|+|.+.|++...+-+-|..|... |-|+-+++ |. |.-
T Consensus 11 IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~--G~v~~~~~~~~--Y~l 62 (260)
T 3r4k_A 11 LLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEA--GFVEQVEGARS--YRL 62 (260)
T ss_dssp HHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHT--TSEEECSSSSE--EEE
T ss_pred HHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEcCCCCc--EEc
Confidence 44455455678999999999999999999999999865 56665554 43 655
No 119
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=53.96 E-value=30 Score=26.50 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCceehhhhhhhcCC-CHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 023574 86 RAMDAVDACNRRVTIGDVAGKAGL-KLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (280)
Q Consensus 86 ~im~Ave~lg~RvTvGDVAa~aGL-~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP 142 (280)
.|-+++... ...|+.+++..+|+ +-.++..||==||.+ +.+++.++++.+|+..
T Consensus 14 ~VW~~L~~~-~~~s~~el~k~t~l~~d~el~lAiGWLaRE--dKI~~~~~~~~l~v~l 68 (77)
T 2l01_A 14 QIWEALNGT-EGLTQKQIKKATKLKADKDFFLGLGWLLRE--DKVVTSEVEGEIFVKL 68 (77)
T ss_dssp HHHHHHTTS-SCEEHHHHHHHHTCSCHHHHHHHHHHHHHT--TCEEEEEETTEEEEEE
T ss_pred HHHHHHhcC-CCCCHHHHHHHHCCCCHHHHHHHHHHHhhc--CceEEEeeCCEEEEEe
Confidence 355667765 58999999999999 999999999888876 7899999999999873
No 120
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=53.73 E-value=63 Score=27.96 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcchHHHHhhhhHHHhHHHH
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRLKVEPV 161 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~~fRs~l~~Ks~r~rl~~~ 161 (280)
+.+.+|++.++ -+-+|+.+||-..|+|=.+|+-.|..|+.| |-.+-=+-|...|+-=. .+. +..+...+
T Consensus 11 erk~~ILE~Lk--~G~~~t~~Iak~LGlShg~aq~~Ly~LeRE--G~V~~Vk~GK~ayw~L~------~s~-y~~kV~di 79 (165)
T 2vxz_A 11 VRLRDILALLA--DGCKTTSLIQQRLGLSHGRAKALIYVLEKE--GRVTRVAFGNVALVCLS------MDQ-YRQLVDGM 79 (165)
T ss_dssp HHHHHHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSCEEEEETTEEEEESC------HHH-HHHHHHHH
T ss_pred HHHHHHHHHHH--hCCccHHHHHHHhCCcHHHHHHHHHHHHhc--CceEEEEEccEEEEEec------HHH-HHHHHHHH
Confidence 45677888888 889999999999999999999999988876 33343456888887631 222 23377777
Q ss_pred HHHhhhhh
Q 023574 162 IDKAKAAA 169 (280)
Q Consensus 162 ~~k~w~v~ 169 (280)
.+.+|+.+
T Consensus 80 lrel~~~l 87 (165)
T 2vxz_A 80 IREVERLV 87 (165)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777755
No 121
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=53.67 E-value=5.7 Score=30.86 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=21.9
Q ss_pred chHHHHHHHHHH-----HcC-CceehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDAVD-----ACN-RRVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~Ave-----~lg-~RvTvGDVAa~aGL~L~~ 113 (280)
.+.+++|++|.. +.| ..+|+.|||.++|++...
T Consensus 23 ~~~r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t 61 (212)
T 3nxc_A 23 RNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAA 61 (212)
T ss_dssp CTTHHHHHHHHHHHHHC------CCHHHHHHHTTSCHHH
T ss_pred hHHHHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhH
Confidence 345788888733 336 469999999999988654
No 122
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=53.66 E-value=67 Score=23.97 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 84 ~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
+-.++..+...++.+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 37 ~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~--glv~r 82 (147)
T 2hr3_A 37 QLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERG--GLIVR 82 (147)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHC--CCEee
Confidence 45678888874667999999999999999999999999887 44443
No 123
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=53.63 E-value=68 Score=24.43 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.+-.++..+... +.+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 50 ~~~~iL~~l~~~-~~~t~~ela~~l~is~~tvs~~l~~Le~~--glv~r~ 96 (162)
T 2fa5_A 50 PEWRVITILALY-PGSSASEVSDRTAMDKVAVSRAVARLLER--GFIRRE 96 (162)
T ss_dssp HHHHHHHHHHHS-TTCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEC-
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEeee
Confidence 446788888874 57999999999999999999999999887 666543
No 124
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=53.58 E-value=12 Score=33.55 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=45.7
Q ss_pred CCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcc
Q 023574 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (280)
Q Consensus 79 l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~~ 144 (280)
|-..++-.|.+++.+.++..|+.|+|.++|++..-.++=|++|++. |.|+.+ ++ .|.-..-
T Consensus 32 l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~--g~l~~~--~~-~y~~t~~ 92 (363)
T 3dp7_A 32 SRLMLKFGIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTI--GTILLE--ED-RYVLAKA 92 (363)
T ss_dssp HHHHHHTTHHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHH--TSEEEE--TT-EEEECHH
T ss_pred HHHHHHhCHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhC--CCeEec--CC-EEecccc
Confidence 4445566677888876778999999999999999999999998874 566653 22 3655443
No 125
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=53.50 E-value=8.4 Score=29.90 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=24.5
Q ss_pred chHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
.+.+.+|++| +.+.|+ .+|+.|||..+|++...
T Consensus 25 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t 62 (217)
T 3mvp_A 25 IEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGT 62 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHH
T ss_pred hhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhH
Confidence 3455556554 566787 89999999999988653
No 126
>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis} SCOP: a.4.2.1 c.55.7.1
Probab=53.36 E-value=11 Score=32.52 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=42.3
Q ss_pred chHHHHHHHHHH-Hc--CCceehhhhhhhcCCCHHHHHHHHHH--HHhhcCCceEeccCC
Q 023574 81 ADVRNRAMDAVD-AC--NRRVTIGDVAGKAGLKLNEAQKALQA--LAADTDGFLEVSDEG 135 (280)
Q Consensus 81 ~~~~~~im~Ave-~l--g~RvTvGDVAa~aGL~L~~Ae~aL~a--LAsD~~GhLqVsesG 135 (280)
.+.+.++.+++. +. |.-+|-||||...|.+...+-.+|.. ++-...||==|..+|
T Consensus 90 t~Fq~~V~~~l~~~IP~G~~~TYg~iA~~~G~p~RaVG~A~~~Np~~~~iPcHRVv~~~G 149 (174)
T 1mgt_A 90 TPFEKKVYEWLTKNVKRGSVITYGDLAKALNTSPRAVGGAMKRNPYPIVVPCHRVVAHDG 149 (174)
T ss_dssp CHHHHHHHHHHHHHSCTTCCEEHHHHHHHTTSCHHHHHHHHHTCSCTTTSCGGGEEBTTB
T ss_pred ChHHHHHHHHHHccCCCCceEeHHHHHHHhCCCHHHHHHHHHhCCCCCcCCcCeEECCCC
Confidence 578899999999 66 77789999999999994444444422 233469999999999
No 127
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=53.34 E-value=9.6 Score=29.74 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=24.8
Q ss_pred chHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
.+.+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t 47 (216)
T 3f0c_A 10 DGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKAS 47 (216)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHH
Confidence 3455666554 677898 59999999999988643
No 128
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=53.32 E-value=8.6 Score=30.00 Aligned_cols=30 Identities=10% Similarity=0.188 Sum_probs=22.6
Q ss_pred hHHHHHHHH----HHHcCCc-eehhhhhhhcCCCH
Q 023574 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKL 111 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L 111 (280)
..+.+|++| +.+.|+. +|+.|||.++|++.
T Consensus 13 ~~r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~ 47 (195)
T 2iu5_A 13 ITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRR 47 (195)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCH
Confidence 356666555 5567875 99999999999764
No 129
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=53.20 E-value=9.9 Score=29.22 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=24.1
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
+.+++|++| +.+.|+ .+|+.|||.++|++...
T Consensus 8 ~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~t 44 (194)
T 3dpj_A 8 QTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGN 44 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHH
Confidence 445556554 557786 79999999999998754
No 130
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=53.04 E-value=73 Score=24.25 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++.++.+.+ .+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 45 ~~~~iL~~l~~~~-~~t~~ela~~l~is~~tvs~~l~~Le~~--Gli~r 90 (154)
T 2eth_A 45 TELYAFLYVALFG-PKKMKEIAEFLSTTKSNVTNVVDSLEKR--GLVVR 90 (154)
T ss_dssp HHHHHHHHHHHHC-CBCHHHHHHHTTSCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 4667899998876 6999999999999999999999999887 44444
No 131
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=52.96 E-value=7.2 Score=30.75 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=24.1
Q ss_pred hHHHHHHH----HHHHcCCceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMD----AVDACNRRVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~----Ave~lg~RvTvGDVAa~aGL~L~~ 113 (280)
..+.+|++ .+.+.|+.+|+.|||.++|++...
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~t 47 (224)
T 1t33_A 12 QAKSQLIAAALAQFGEYGLHATTRDIAALAGQNIAA 47 (224)
T ss_dssp HHHHHHHHHHHHHHHHHGGGSCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCccccHHHHHHHhCCCHHH
Confidence 34555554 456689889999999999998654
No 132
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=52.80 E-value=39 Score=26.11 Aligned_cols=55 Identities=15% Similarity=0.317 Sum_probs=46.5
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 023574 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (280)
Q Consensus 86 ~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~ 143 (280)
.|-+++...+ ..|+.+++..+|++-+++..||==||.+ +.+++.+++..+|+...
T Consensus 12 ~VW~~L~~~~-~~s~~el~k~t~l~d~el~lAIGWLaRE--dKI~~~~~~~~l~v~L~ 66 (82)
T 2l02_A 12 KVWHALNEAD-GISIPELARKVNLSVESTALAVGWLARE--NKVVIERKNGLIEIYNE 66 (82)
T ss_dssp HHHHHHHHCC-SBCHHHHHHHHTCCHHHHHHHHHHHHTT--TSEEEEEETTEEEEEEG
T ss_pred HHHHHHhccC-CCCHHHHHHHhCCCHHHHHHHHHHHhcc--CceeEEeeCCEEEEEEc
Confidence 4667788865 9999999999999999999999888876 68888888888888643
No 133
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=52.34 E-value=11 Score=29.31 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=24.1
Q ss_pred hHHHHHH----HHHHHcCCc-eehhhhhhhcCCCHHH
Q 023574 82 DVRNRAM----DAVDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im----~Ave~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
+.+.+|+ +.+.+.|+. +|+.|||.++|++...
T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 46 (216)
T 3s5r_A 10 NTRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAM 46 (216)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHH
Confidence 3455554 456778976 9999999999998754
No 134
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=52.08 E-value=11 Score=29.13 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=24.8
Q ss_pred chHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHHH
Q 023574 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~A 114 (280)
...+.+|++| +.+.|+ .+|+.|||.++|++....
T Consensus 30 ~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~ 68 (218)
T 3dcf_A 30 NDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAI 68 (218)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHH
T ss_pred cchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHH
Confidence 3455666555 556787 599999999999987543
No 135
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=51.99 E-value=10 Score=29.10 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=24.3
Q ss_pred CchHHHHHHHHH----HHcCCc-eehhhhhhhcCCCH
Q 023574 80 PADVRNRAMDAV----DACNRR-VTIGDVAGKAGLKL 111 (280)
Q Consensus 80 ~~~~~~~im~Av----e~lg~R-vTvGDVAa~aGL~L 111 (280)
..+.+.+|++|. .+.|+. +|+.|||.++|++.
T Consensus 14 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~ 50 (211)
T 3him_A 14 TSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSP 50 (211)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCc
Confidence 446677776665 467875 99999999999764
No 136
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=51.98 E-value=5.3 Score=31.51 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=25.5
Q ss_pred CCchHHHHHHHHH----HHcCC-ceehhhhhhhcCCCHH
Q 023574 79 LPADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLN 112 (280)
Q Consensus 79 l~~~~~~~im~Av----e~lg~-RvTvGDVAa~aGL~L~ 112 (280)
++|+.+.+|++|. .+.|+ .+|+.|||.++|++.-
T Consensus 2 ~~~~~r~~Il~aA~~lf~~~Gy~~~s~~~IA~~Agvskg 40 (202)
T 2id6_A 2 HMLSKRDAILKAAVEVFGKKGYDRATTDEIAEKAGVAKG 40 (202)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCTH
T ss_pred CchHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHH
Confidence 3456677776665 55686 6999999999998754
No 137
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=51.84 E-value=11 Score=28.80 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=23.9
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
+.+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 10 ~~r~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~t 46 (197)
T 3rd3_A 10 DTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGS 46 (197)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHH
T ss_pred hHHHHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhh
Confidence 455666555 556787 69999999999988643
No 138
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=51.71 E-value=13 Score=32.53 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=44.6
Q ss_pred ccccCCCCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC
Q 023574 73 IVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (280)
Q Consensus 73 ~v~~~~l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesG 135 (280)
.+.+--|-..++-.|.+++.+ +..|+.|+|.++|++....++=|..|++ -|-|+-+++|
T Consensus 16 ~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~~~~~l~rlLr~l~~--~gl~~~~~~~ 74 (332)
T 3i53_A 16 LATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGAHADSLDRLLRHLVA--VGLFTRDGQG 74 (332)
T ss_dssp CHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEECTTS
T ss_pred hHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHh--CCcEEecCCC
Confidence 334444556677778888864 4799999999999999999999999987 5566654444
No 139
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=51.62 E-value=13 Score=28.03 Aligned_cols=51 Identities=10% Similarity=0.080 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc-----CCceEeccCCcE
Q 023574 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT-----DGFLEVSDEGDV 137 (280)
Q Consensus 84 ~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~-----~GhLqVsesGEI 137 (280)
--.|++++. .| ++..++|..+|++-..+.+.|..|.... .+.+..|+.|.-
T Consensus 10 i~~IL~~i~-~~--~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~~~~~LT~kG~~ 65 (95)
T 1r7j_A 10 IQAILEACK-SG--SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGKQYMLTKKGEE 65 (95)
T ss_dssp HHHHHHHHT-TC--BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHH
T ss_pred HHHHHHHHH-cC--CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEECCeeEEChhHHH
Confidence 345566665 23 9999999999999999999999998752 445666666653
No 140
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=51.40 E-value=11 Score=29.24 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=25.0
Q ss_pred chHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
...+.+|++| +.+.|+ .+|+.|||..+|++...
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t 50 (212)
T 3knw_A 13 EAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGS 50 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHH
T ss_pred hhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHH
Confidence 3556666654 556787 79999999999998654
No 141
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=51.32 E-value=27 Score=26.35 Aligned_cols=47 Identities=13% Similarity=0.340 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.+-.++..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 41 ~~~~iL~~l~~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~--Glv~r~ 87 (148)
T 3nrv_A 41 TEWRIISVLSSAS-DCSVQKISDILGLDKAAVSRTVKKLEEK--KYIEVN 87 (148)
T ss_dssp HHHHHHHHHHHSS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEC-
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEee
Confidence 3457888888777 8999999999999999999999999987 666544
No 142
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=51.29 E-value=12 Score=29.20 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=21.4
Q ss_pred HHHHHHHHcCC-ceehhhhhhhcCCCHHH
Q 023574 86 RAMDAVDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 86 ~im~Ave~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
..++.+.+.|+ .+|+.|||.++|++...
T Consensus 12 aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 40 (185)
T 2yve_A 12 TAIDYIGEYSLETLSYDSLAEATGLSKSG 40 (185)
T ss_dssp HHHHHHHHSCSTTCCHHHHHHHHCCCHHH
T ss_pred HHHHHHHHcChhhccHHHHHHHhCCChHH
Confidence 33445667787 69999999999988653
No 143
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=51.23 E-value=11 Score=29.12 Aligned_cols=33 Identities=9% Similarity=0.269 Sum_probs=24.7
Q ss_pred chHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
...+++|++| +.+.|+ .+|+.|||.++|++...
T Consensus 15 ~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t 52 (213)
T 2qtq_A 15 PGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSAL 52 (213)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHH
T ss_pred hhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhh
Confidence 4456666655 455687 79999999999998743
No 144
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=51.16 E-value=9.7 Score=29.95 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=23.8
Q ss_pred HHHHHH----HHHHHcCC-ceehhhhhhhcCCCHHH
Q 023574 83 VRNRAM----DAVDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 83 ~~~~im----~Ave~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
.+.+|+ +.+.+.|+ .+|+.|||..+|++...
T Consensus 24 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t 59 (214)
T 2zb9_A 24 VRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTT 59 (214)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHH
Confidence 355554 45667887 79999999999998764
No 145
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=51.03 E-value=75 Score=23.76 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.+-.++..+.+.++ |+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 38 ~~~~iL~~l~~~~~--~~~~la~~l~~~~~tvs~~l~~Le~~--Glv~r~ 83 (144)
T 3f3x_A 38 LDFSILKATSEEPR--SMVYLANRYFVTQSAITAAVDKLEAK--GLVRRI 83 (144)
T ss_dssp HHHHHHHHHHHSCE--EHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHCCC--CHHHHHHHHCCChhHHHHHHHHHHHC--CCEEec
Confidence 35678899988877 99999999999999999999999988 666544
No 146
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=50.78 E-value=68 Score=24.31 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 44 ~~~~iL~~l~~~~-~~t~~ela~~l~i~~~tvs~~l~~Le~~--Glv~r 89 (155)
T 3cdh_A 44 PEWRVLACLVDND-AMMITRLAKLSLMEQSRMTRIVDQMDAR--GLVTR 89 (155)
T ss_dssp HHHHHHHHHSSCS-CBCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHCC-CcCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 4456788887654 6999999999999999999999999887 45544
No 147
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=50.73 E-value=72 Score=23.47 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~ 125 (280)
.+-.++.++.+.+ .+|+.|+|...|++...+-+.|..|..+.
T Consensus 37 ~~~~iL~~l~~~~-~~t~~ela~~l~~s~~~vs~~l~~Le~~g 78 (142)
T 2fbi_A 37 QQWRVIRILRQQG-EMESYQLANQACILRPSMTGVLARLERDG 78 (142)
T ss_dssp HHHHHHHHHHHHC-SEEHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCHhHHHHHHHHHHHCC
Confidence 4567888888866 49999999999999999999999998873
No 148
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=50.69 E-value=12 Score=29.02 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=24.1
Q ss_pred chHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
...+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 6 ~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t 43 (195)
T 2dg7_A 6 PGAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRS 43 (195)
T ss_dssp TTHHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHH
Confidence 3456666555 5567875 9999999999987643
No 149
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=50.62 E-value=10 Score=29.85 Aligned_cols=32 Identities=13% Similarity=0.327 Sum_probs=24.1
Q ss_pred hHHHHHHH----HHHHcCCc-eehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMD----AVDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~----Ave~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
+.+.+|++ .+.+.|+. +|+.|||.++|++...
T Consensus 3 ~tr~~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t 39 (212)
T 3rh2_A 3 KTRDKIIQASLELFNEHGERTITTNHIAAHLDISPGN 39 (212)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 44555554 45677887 9999999999988654
No 150
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=50.52 E-value=42 Score=26.20 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=34.7
Q ss_pred CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc--CCcE--EEEcCcchH
Q 023574 96 RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD--EGDV--LYVFPNNYR 146 (280)
Q Consensus 96 ~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVse--sGEI--lYvFP~~fR 146 (280)
.-.|+.++|...|++..++.+.|..|..+.==..+.+. +|.+ .|.|-.-|.
T Consensus 50 ~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~pl~~ 104 (128)
T 2vn2_A 50 LFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEPLWE 104 (128)
T ss_dssp SSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----------CEECHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHHHHH
Confidence 44899999999999999999999999987543343332 2433 577743333
No 151
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=50.51 E-value=6.1 Score=34.22 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=43.0
Q ss_pred HHcCCceehhhhhhhcCCCHHHHHHHH--------------HHHHhhcC-------CceEeccCCcEEEEcCcchHHHHh
Q 023574 92 DACNRRVTIGDVAGKAGLKLNEAQKAL--------------QALAADTD-------GFLEVSDEGDVLYVFPNNYRAKLA 150 (280)
Q Consensus 92 e~lg~RvTvGDVAa~aGL~L~~Ae~aL--------------~aLAsD~~-------GhLqVsesGEIlYvFP~~fRs~l~ 150 (280)
+....++|+.|||..+|+|...+-++| ++.|.+.| ..|.-..++-|..++|.. .
T Consensus 5 ~~~~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~-----~ 79 (344)
T 3kjx_A 5 ADTKRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSL-----S 79 (344)
T ss_dssp -----CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCS-----S
T ss_pred ccCCCCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCC-----C
Confidence 344568999999999999999998887 23344422 234445567788888752 3
Q ss_pred hhhHHHhHHHHHHHhhh
Q 023574 151 AKSFRLKVEPVIDKAKA 167 (280)
Q Consensus 151 ~Ks~r~rl~~~~~k~w~ 167 (280)
+.++..-++.+-+.+..
T Consensus 80 ~~~~~~~~~gi~~~a~~ 96 (344)
T 3kjx_A 80 NMVFPEVLTGINQVLED 96 (344)
T ss_dssp SSSHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45555545544444443
No 152
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=50.48 E-value=10 Score=28.71 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=23.6
Q ss_pred hHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHH
Q 023574 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLN 112 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~ 112 (280)
+.+.+|++| +.+.|+. +|+.|||.++|++..
T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~ 45 (191)
T 3on4_A 10 NTKERILAVAEALIQKDGYNAFSFKDIATAINIKTA 45 (191)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHH
T ss_pred hHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcc
Confidence 456666554 5677875 999999999998864
No 153
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=50.43 E-value=9.2 Score=29.11 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=21.1
Q ss_pred chHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHH
Q 023574 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLN 112 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~ 112 (280)
.+.+++|++| +.+.|+. +|+.|||.++|++..
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~ 47 (199)
T 3on2_A 11 GSLRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHA 47 (199)
T ss_dssp CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChH
Confidence 3456666555 5567886 899999999998753
No 154
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=50.30 E-value=11 Score=29.18 Aligned_cols=29 Identities=7% Similarity=0.098 Sum_probs=21.6
Q ss_pred HHHHHH----HHHHHcCCc-eehhhhhhhcCCCH
Q 023574 83 VRNRAM----DAVDACNRR-VTIGDVAGKAGLKL 111 (280)
Q Consensus 83 ~~~~im----~Ave~lg~R-vTvGDVAa~aGL~L 111 (280)
.+.+|+ +.+.+.|+. +|+.|||.++|++.
T Consensus 20 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~ 53 (216)
T 3qqa_A 20 RQEKIKAVALELFLTKGYQETSLSDIIKLSGGSY 53 (216)
T ss_dssp HHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCCH
Confidence 445554 455678876 99999999999763
No 155
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=50.25 E-value=8.4 Score=29.15 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=23.9
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
+.+++|++| +.+.|+ .+|+.|||.++|++...
T Consensus 4 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 40 (170)
T 3egq_A 4 DQSVRIIEAALRLYMKKPPHEVSIEEIAREAKVSKSL 40 (170)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccCcHHHHHHHhCCCchh
Confidence 345666655 456788 59999999999988643
No 156
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=50.25 E-value=11 Score=30.56 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=25.0
Q ss_pred chHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
.+.+++|++| +.+.|+ .+|+.|||.++|++...
T Consensus 43 ~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~t 80 (236)
T 3q0w_A 43 DDRELAILATAENLLEDRPLADISVDDLAKGAGISRPT 80 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHH
Confidence 3556666555 556688 89999999999998654
No 157
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=50.21 E-value=16 Score=30.96 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=49.2
Q ss_pred CCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 79 l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
++.+.-++|++-|-+.|.-+|+.-|+.+-.++...|+++|..|.+..-=.+=+-..+-.||.=
T Consensus 45 fDk~tydKL~KEVpk~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYTr 107 (143)
T 2xzm_8 45 IEKKNVESIINNPSKVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYSV 107 (143)
T ss_dssp CCHHHHHHHHTCCTTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEEE
T ss_pred ecHHHHHHHHHHhcccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEec
Confidence 356677788888888888999999999999999999999999998744333333346677753
No 158
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=49.95 E-value=31 Score=31.04 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP 142 (280)
+.+.+|++.+. .+..+|+.|+|.+-|+|...+.+.|..|.. .|.+..+..|. =|...
T Consensus 5 ~r~~~Il~~L~-~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~--~G~~i~~~~g~-GY~l~ 61 (321)
T 1bia_A 5 TVPLKLIALLA-NGEFHSGEQLGETLGMSRAAINKHIQTLRD--WGVDVFTVPGK-GYSLP 61 (321)
T ss_dssp HHHHHHHHHHT-TSSCBCHHHHHHHHTSCHHHHHHHHHHHHH--TTCCCEEETTT-EEECS
T ss_pred hHHHHHHHHHH-cCCCcCHHHHHHHHCCCHHHHHHHHHHHHh--CCCcEEEecCC-CcEEe
Confidence 45667888884 577899999999999999999999999976 34444455555 46663
No 159
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=49.94 E-value=9.6 Score=29.68 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=23.1
Q ss_pred hHHHHHHH----HHHHcCC-ceehhhhhhhcCCCHH
Q 023574 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLN 112 (280)
Q Consensus 82 ~~~~~im~----Ave~lg~-RvTvGDVAa~aGL~L~ 112 (280)
..+.+|++ .+.+.|+ .+|+.|||.++|++..
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~ 44 (193)
T 2dg8_A 9 QRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLG 44 (193)
T ss_dssp THHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTH
T ss_pred hHHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCch
Confidence 34555554 4566787 7999999999998754
No 160
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=49.86 E-value=13 Score=29.11 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=24.2
Q ss_pred chHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023574 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~ 112 (280)
.+.+.+|++| +.+.|+ .+|+.|||.++|++..
T Consensus 29 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~ 65 (222)
T 3bru_A 29 SLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKG 65 (222)
T ss_dssp GGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHH
T ss_pred hhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcc
Confidence 4456666555 566787 7999999999998864
No 161
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=49.79 E-value=36 Score=20.44 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=30.5
Q ss_pred CCCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHH
Q 023574 78 KLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQA 120 (280)
Q Consensus 78 ~l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~a 120 (280)
.|+++.+..++...+ ...|..+||...|++...+.+-+..
T Consensus 5 ~l~~~~~~~i~~~~~---~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKL---LNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 567777777776553 3479999999999999998776643
No 162
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=49.58 E-value=12 Score=29.03 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=23.9
Q ss_pred chHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023574 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~ 112 (280)
...+.+|++| +.+.|+ .+|+.|||.++|++..
T Consensus 16 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~ 52 (207)
T 2rae_A 16 STTQDRISTVGIELFTEQGFDATSVDEVAEASGIARR 52 (207)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHH
T ss_pred HhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcc
Confidence 3456666555 556787 5999999999998754
No 163
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=49.48 E-value=13 Score=28.33 Aligned_cols=32 Identities=6% Similarity=0.168 Sum_probs=22.7
Q ss_pred hHHHHHH----HHHHHcCC-ceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAM----DAVDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im----~Ave~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
+.+.+|+ +.+.+.|+ .+|+.|||.++|++...
T Consensus 2 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 38 (194)
T 3bqz_B 2 NLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGN 38 (194)
T ss_dssp --CHHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHH
T ss_pred cHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCchh
Confidence 3445554 45567786 59999999999998754
No 164
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=49.39 E-value=11 Score=29.29 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=26.4
Q ss_pred CCCchHHHHHHHH----HHHcCCc-eehhhhhhhcCCCH
Q 023574 78 KLPADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKL 111 (280)
Q Consensus 78 ~l~~~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L 111 (280)
+.+.+.+.+|++| +.+.|+. +|+.|||.++|++.
T Consensus 9 ~~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~ 47 (217)
T 3nrg_A 9 NLPEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAK 47 (217)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCT
T ss_pred CChHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcH
Confidence 4566677777665 4577886 99999999999874
No 165
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=49.32 E-value=82 Score=23.70 Aligned_cols=47 Identities=6% Similarity=0.164 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.+-.|+.++...+ .+|+.|+|...|++...+-+.|..|..+ |.++..
T Consensus 38 ~~~~iL~~l~~~~-~~t~~ela~~l~~s~~tvs~~l~~Le~~--glv~r~ 84 (155)
T 1s3j_A 38 AQLFVLASLKKHG-SLKVSEIAERMEVKPSAVTLMADRLEQK--NLIART 84 (155)
T ss_dssp HHHHHHHHHHHHS-EEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEeec
Confidence 3457888887755 6999999999999999999999999887 555544
No 166
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=49.18 E-value=8.7 Score=30.82 Aligned_cols=32 Identities=9% Similarity=0.209 Sum_probs=24.3
Q ss_pred chHHHHHHHHHHHc-----CC-ceehhhhhhhcCCCHH
Q 023574 81 ADVRNRAMDAVDAC-----NR-RVTIGDVAGKAGLKLN 112 (280)
Q Consensus 81 ~~~~~~im~Ave~l-----g~-RvTvGDVAa~aGL~L~ 112 (280)
...+.+|++|+.++ |+ .+|+.|||.+||++..
T Consensus 18 ~~tr~~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~ 55 (185)
T 3o60_A 18 QKTQTKLYTVLERFYVEDRTFESISIKDLCEQARVSRA 55 (185)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHH
Confidence 35667788775544 65 6999999999998864
No 167
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=49.10 E-value=41 Score=26.97 Aligned_cols=61 Identities=8% Similarity=0.122 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHHcC-Cceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 81 ADVRNRAMDAVDACN-RRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 81 ~~~~~~im~Ave~lg-~RvTvGDVAa~a-----GL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
...|..|++++.+.+ .-+|+.||...- ++++..+=+.|..|....=-+=-..++|...|..
T Consensus 16 T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 82 (150)
T 2w57_A 16 TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFEL 82 (150)
T ss_dssp CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 456788999998887 789999998865 8999999999999987753332222357778875
No 168
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=49.07 E-value=11 Score=27.22 Aligned_cols=34 Identities=6% Similarity=0.144 Sum_probs=26.7
Q ss_pred CchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHH
Q 023574 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQK 116 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~ 116 (280)
+|. +.+|..++++.| .|+.++|.++|++.....+
T Consensus 8 ~~~-~~ri~~~l~~~g--lT~~~LA~~~Gvs~stls~ 41 (74)
T 1neq_A 8 DWH-RADVIAGLKKRK--LSLSALSRQFGYAPTTLAN 41 (74)
T ss_dssp SCC-HHHHHHHHHTTS--CCHHHHHHHHSSCHHHHHH
T ss_pred CCC-HHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHH
Confidence 444 678888888554 8999999999999776653
No 169
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=49.04 E-value=24 Score=26.64 Aligned_cols=46 Identities=15% Similarity=0.108 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++..+...++ +|+.|+|...|++...+-+.|..|..+ |.++.
T Consensus 32 ~q~~iL~~l~~~~~-~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r 77 (145)
T 3g3z_A 32 NLFAVLYTLATEGS-RTQKHIGEKWSLPKQTVSGVCKTLAGQ--GLIEW 77 (145)
T ss_dssp HHHHHHHHHHHHCS-BCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEee
Confidence 45678888988775 999999999999999999999999876 55554
No 170
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=48.92 E-value=26 Score=27.36 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCceehhhhhh-hcCCCHHHHHHHHHHHHhhcCCceE
Q 023574 84 RNRAMDAVDACNRRVTIGDVAG-KAGLKLNEAQKALQALAADTDGFLE 130 (280)
Q Consensus 84 ~~~im~Ave~lg~RvTvGDVAa-~aGL~L~~Ae~aL~aLAsD~~GhLq 130 (280)
+=.|+..+.+.+ ..|++|+|. .-+++....-+.|..|..+ |-++
T Consensus 18 QfsiL~~L~~~~-~~t~~~Lae~~l~~drstvsrnl~~L~r~--GlVe 62 (95)
T 1bja_A 18 TATILITIAKKD-FITAAEVREVHPDLGNAVVNSNIGVLIKK--GLVE 62 (95)
T ss_dssp HHHHHHHHHHST-TBCHHHHHHTCTTSCHHHHHHHHHHHHTT--TSEE
T ss_pred HHHHHHHHHHCC-CCCHHHHHHHHhcccHHHHHHHHHHHHHC--CCee
Confidence 345778888888 999999999 9999999999999999988 7777
No 171
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=48.92 E-value=28 Score=30.24 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=36.3
Q ss_pred HHHHHHHHHHc---CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 84 RNRAMDAVDAC---NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 84 ~~~im~Ave~l---g~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
-.|.++.++-+ +...|+.|+|.+.|++...+-+-|..|... |.|+-+
T Consensus 20 l~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~--G~v~~~ 69 (265)
T 2ia2_A 20 LARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVEL--GYVATD 69 (265)
T ss_dssp HHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHH--TSEEES
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEec
Confidence 34555556554 467999999999999999999999998874 555544
No 172
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=48.91 E-value=9.7 Score=33.17 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=0.0
Q ss_pred HcCCceehhhhhhhcCCCHHHHHHHHH
Q 023574 93 ACNRRVTIGDVAGKAGLKLNEAQKALQ 119 (280)
Q Consensus 93 ~lg~RvTvGDVAa~aGL~L~~Ae~aL~ 119 (280)
....++|+.|||..+|+|...+-++|.
T Consensus 8 ~g~~~~ti~diA~~agVS~~TVSr~Ln 34 (355)
T 3e3m_A 8 PGHRPVTMRDVAKAAGVSRMTVSRALK 34 (355)
T ss_dssp ---------------------------
T ss_pred CCCCCCcHHHHHHHhCCCHHHHHHHHC
Confidence 345679999999999999999988885
No 173
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=48.51 E-value=13 Score=28.59 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=23.8
Q ss_pred chHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023574 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~ 112 (280)
...+.+|++| +.+.|+ .+|+.|||.++|++..
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~ 46 (203)
T 3b81_A 10 NNKRTELANKIWDIFIANGYENTTLAFIINKLGISKG 46 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCch
Confidence 3455666554 556787 5999999999998864
No 174
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=48.49 E-value=13 Score=28.69 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=25.5
Q ss_pred CchHHHHHHHHH----HHcCC-ceehhhhhhhcCCCHHH
Q 023574 80 PADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 80 ~~~~~~~im~Av----e~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
..+.+.+|++|. .+.|+ .+|+.|||.++|++...
T Consensus 16 ~~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t 54 (212)
T 1pb6_A 16 VSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTN 54 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhH
Confidence 345667777664 45586 78999999999988754
No 175
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=48.46 E-value=5.7 Score=30.73 Aligned_cols=33 Identities=9% Similarity=0.205 Sum_probs=24.7
Q ss_pred chHHHHHHHHH----HHcCC-ceehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~Av----e~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
.+.+.+|++|. .+.|+ .+|+.|||.++|++...
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 50 (215)
T 3e7q_A 13 EQRKALLIEATLACLKRHGFQGASVRKICAEAGVSVGL 50 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 34566666654 55687 89999999999988643
No 176
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=48.45 E-value=35 Score=25.82 Aligned_cols=60 Identities=20% Similarity=0.341 Sum_probs=46.9
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcch
Q 023574 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNY 145 (280)
Q Consensus 85 ~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~~f 145 (280)
...++.++. ..-+.+.|+|+.=||+..++-+-++.|-++..=+==+++.|.-||+=|.-+
T Consensus 10 ~~Fi~yIk~-~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~eE~ 69 (72)
T 1wi9_A 10 TEFINYIKK-SKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSGP 69 (72)
T ss_dssp HHHHHHHHH-CSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSSC
T ss_pred HHHHHHHHH-cCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHHHh
Confidence 445566654 567889999999999999999999999988644445677899999866543
No 177
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=48.41 E-value=13 Score=29.49 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=23.9
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
+.+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 8 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t 44 (202)
T 2d6y_A 8 ATKARIFEAAVAEFARHGIAGARIDRIAAEARANKQL 44 (202)
T ss_dssp CHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 345566554 556687 89999999999988654
No 178
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=48.40 E-value=11 Score=28.68 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=22.3
Q ss_pred HHHHHHHH----HHHcCCc-eehhhhhhhcCCCHH
Q 023574 83 VRNRAMDA----VDACNRR-VTIGDVAGKAGLKLN 112 (280)
Q Consensus 83 ~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~ 112 (280)
.+.+|++| +.+.|+. +|+.|||.++|++..
T Consensus 9 ~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~ 43 (183)
T 1zk8_A 9 TLQKIVETAAEIADANGVQEVTLASLAQTLGVRSP 43 (183)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCch
Confidence 35555554 5566875 999999999998764
No 179
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=48.27 E-value=33 Score=25.68 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVse 133 (280)
.+-.++..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++...
T Consensus 38 ~~~~iL~~l~~~~-~~~~~ela~~l~~~~~tvs~~l~~L~~~--gli~r~~ 85 (142)
T 2bv6_A 38 PQFLVLTILWDES-PVNVKKVVTELALDTGTVSPLLKRMEQV--DLIKRER 85 (142)
T ss_dssp HHHHHHHHHHHSS-EEEHHHHHHHTTCCTTTHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHHCCChhhHHHHHHHHHHC--CCEEeec
Confidence 4567888888765 6999999999999999999999999988 5555543
No 180
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=48.15 E-value=13 Score=28.96 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=25.8
Q ss_pred chHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHHH
Q 023574 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~A 114 (280)
...+.+|++| +.+.|+ .+|+.|||.++|++....
T Consensus 11 ~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tl 49 (192)
T 2fq4_A 11 IETQKAILSASYELLLESGFKAVTVDKIAERAKVSKATI 49 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHH
Confidence 3456777666 456787 799999999999987653
No 181
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=47.98 E-value=12 Score=28.70 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=25.1
Q ss_pred chHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
.+.+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t 53 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKT 53 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHH
Confidence 4556666655 5567875 9999999999998754
No 182
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=47.97 E-value=12 Score=30.24 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=24.2
Q ss_pred hHHHHHH----HHHHHcCCc-eehhhhhhhcCCCHHH
Q 023574 82 DVRNRAM----DAVDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im----~Ave~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
..+.+|+ +.+.+.|+. +|+.|||.++|++...
T Consensus 39 ~~r~~Il~AA~~lf~e~G~~~~tv~~IA~~AGvs~~t 75 (214)
T 2guh_A 39 QSRSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPL 75 (214)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHH
T ss_pred hHHHHHHHHHHHHHHHcChhhcCHHHHHHHhCCCHHH
Confidence 4455555 456778986 9999999999988654
No 183
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=47.81 E-value=56 Score=26.02 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=46.3
Q ss_pred chHHHHHHHHHHHcCCceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 81 ADVRNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 81 ~~~~~~im~Ave~lg~RvTvGDVAa~a-----GL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
...|..|++++.+.+ -+|+.||.... ++++..+=+.|..|+...=-+=-...+|...|..
T Consensus 18 T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~~ 82 (145)
T 3eyy_A 18 TPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYHL 82 (145)
T ss_dssp CHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEEE
T ss_pred CHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 456788899999988 89999987744 7899999999999988754333233467777875
No 184
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=47.65 E-value=39 Score=28.55 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=39.6
Q ss_pred HHHHcCCceehhhhhhhcC--CCHHHHHHHHHHHHhhc---CCceEeccCCcEEEEc
Q 023574 90 AVDACNRRVTIGDVAGKAG--LKLNEAQKALQALAADT---DGFLEVSDEGDVLYVF 141 (280)
Q Consensus 90 Ave~lg~RvTvGDVAa~aG--L~L~~Ae~aL~aLAsD~---~GhLqVsesGEIlYvF 141 (280)
.+=-.+.-+|+.++|...| ++.++++++|..|+.++ +--+++-+.|+- |.|
T Consensus 15 lLf~~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~g-y~l 70 (162)
T 1t6s_A 15 LIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGG-YRF 70 (162)
T ss_dssp HHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTE-EEE
T ss_pred HHHHcCCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCE-EEE
Confidence 3334567799999999999 99999999999999987 345777665543 555
No 185
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=47.62 E-value=11 Score=29.59 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=23.6
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~ 112 (280)
+.+.+|++| +.+.|| .+|+.|||.++|++.-
T Consensus 12 ~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~g 47 (205)
T 1rkt_A 12 KRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRG 47 (205)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCcc
Confidence 445666655 456787 6999999999998864
No 186
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=47.58 E-value=7 Score=30.03 Aligned_cols=32 Identities=9% Similarity=0.191 Sum_probs=24.5
Q ss_pred hHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
+.+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 14 ~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t 50 (191)
T 4aci_A 14 NSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGA 50 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchH
Confidence 455566554 6777875 9999999999998754
No 187
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=47.55 E-value=84 Score=23.86 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.+-.++..+...++.+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~--Gli~r~ 95 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKD--GMVVKA 95 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHH--TSEEEC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHC--CCEEee
Confidence 456788888656678999999999999999999999999887 555543
No 188
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=47.52 E-value=39 Score=25.59 Aligned_cols=46 Identities=9% Similarity=0.162 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++..+.+.+ .+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 42 ~~~~iL~~l~~~~-~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r 87 (154)
T 2qww_A 42 QQLAMINVIYSTP-GISVADLTKRLIITGSSAAANVDGLISL--GLVVK 87 (154)
T ss_dssp HHHHHHHHHHHST-TEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 4567888888875 5999999999999999999999999886 55554
No 189
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=47.49 E-value=13 Score=29.56 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHH----cCCc-eehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDAVDA----CNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~Ave~----lg~R-vTvGDVAa~aGL~L~~ 113 (280)
+.+.+|++|..+ .|+. +|+.|||..+|++.-.
T Consensus 24 ~~r~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvskgt 60 (214)
T 2oer_A 24 ELVASILEAAVQVLASEGAQRFTTARVAERAGVSIGS 60 (214)
T ss_dssp HHHHHHHHHHHHC------CCCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCCCch
Confidence 557778777654 5765 8999999999988653
No 190
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=47.33 E-value=24 Score=29.75 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
..+.+|++.+. . ++.|+.|+|.+.|++...+.+-|..|... |-++..
T Consensus 20 ~~~~~IL~~L~-~-~~~s~~eLA~~lglS~stv~~~l~~Le~~--GlI~~~ 66 (192)
T 1uly_A 20 DTRRKILKLLR-N-KEMTISQLSEILGKTPQTIYHHIEKLKEA--GLVEVK 66 (192)
T ss_dssp HHHHHHHHHHT-T-CCBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHH-c-CCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEE
Confidence 56778999997 3 68999999999999999999999999655 555544
No 191
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=47.21 E-value=12 Score=29.37 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=22.8
Q ss_pred hHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHH
Q 023574 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLN 112 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~ 112 (280)
+.+.+|++| +.+.|+. +|+.|||.++|++.-
T Consensus 9 ~~r~~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~g 44 (204)
T 3anp_C 9 RRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRG 44 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCchH
Confidence 345556555 4567874 999999999998754
No 192
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=47.07 E-value=13 Score=28.17 Aligned_cols=32 Identities=6% Similarity=0.144 Sum_probs=24.1
Q ss_pred hHHHHHHH----HHHHcCC-ceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~----Ave~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
..+.+|++ .+.+.|+ .+|+.|||.++|++...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t 44 (194)
T 2g7s_A 8 SKADDILQCARTLIIRGGYNSFSYADISQVVGIRNAS 44 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHH
T ss_pred hhHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchH
Confidence 45566655 4566786 59999999999988653
No 193
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=46.98 E-value=97 Score=23.88 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 023574 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (280)
Q Consensus 85 ~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~ 143 (280)
..|+..+... +..|+.|+|..-|++...+.+.|..|..+ |-++... |.-+|+=+.
T Consensus 43 ~~i~~~l~~~-~~~~~~~la~~l~vs~~tvs~~l~~Le~~--Glv~r~~-~~~~~lT~~ 97 (155)
T 2h09_A 43 ELISDLIREV-GEARQVDMAARLGVSQPTVAKMLKRLATM--GLIEMIP-WRGVFLTAE 97 (155)
T ss_dssp HHHHHHHHHH-SCCCHHHHHHHHTSCHHHHHHHHHHHHHT--TCEEEET-TTEEEECHH
T ss_pred HHHHHHHHhC-CCcCHHHHHHHhCcCHHHHHHHHHHHHHC--CCEEEec-CCceEEChh
Confidence 3444455554 45899999999999999999999999888 5565443 334454443
No 194
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=46.78 E-value=24 Score=31.24 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=43.0
Q ss_pred ccccCCCCchHHHHHHHHHHHcCCceehhhhhhhcCC---CHHHHHHHHHHHHhhcCCceEec
Q 023574 73 IVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGL---KLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 73 ~v~~~~l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL---~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.+.+--|-..++-.|.+++.+.|+..|+.|+|.++|+ +..-.++=|+.|++ -|-|+..
T Consensus 21 ~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~--~gll~~~ 81 (358)
T 1zg3_A 21 FVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTH--NGFFAKT 81 (358)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhh--CCcEEEe
Confidence 3444445566777888888887778999999999999 46677777777775 4566554
No 195
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=46.67 E-value=7.3 Score=30.22 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=23.3
Q ss_pred HHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 84 RNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 84 ~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 10 r~~Il~AA~~l~~~~G~~~~t~~~IA~~agvs~~t 44 (195)
T 3frq_A 10 DDEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAA 44 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHhhCcccCCHHHHHHHhCCCHHH
Confidence 5556554 577788 79999999999988653
No 196
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=46.62 E-value=90 Score=23.39 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++..+...+ .+|+.|+|...|++...+-+.|..|..+ |.++.
T Consensus 41 ~~~~iL~~l~~~~-~~t~~ela~~l~~~~~~vs~~l~~Le~~--Glv~r 86 (152)
T 3bj6_A 41 GQRAILEGLSLTP-GATAPQLGAALQMKRQYISRILQEVQRA--GLIER 86 (152)
T ss_dssp HHHHHHHHHHHST-TEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCeee
Confidence 4567888888766 7999999999999999999999999877 44544
No 197
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=46.61 E-value=10 Score=30.06 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=23.8
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
+.+.+|++| +.+.|+ .+|+.|||.++|++.-.
T Consensus 8 ~~r~~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt 44 (206)
T 1vi0_A 8 PKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGT 44 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCChhH
Confidence 345666554 566788 59999999999988643
No 198
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=46.57 E-value=14 Score=28.09 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=20.6
Q ss_pred HHHHHHHcCCc-eehhhhhhhcCCCHHH
Q 023574 87 AMDAVDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 87 im~Ave~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
.++.+.+.|+. +|+.|||.++|++...
T Consensus 16 a~~l~~~~G~~~~t~~~IA~~agvs~~t 43 (199)
T 3qbm_A 16 AAALFNVSGYAGTAISDIMAATGLEKGG 43 (199)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHhCcCcCCHHHHHHHhCCCccH
Confidence 34456677865 8999999999988643
No 199
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=46.56 E-value=43 Score=26.94 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=42.4
Q ss_pred HHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceE--eccCCcE--EEEcCcchHH
Q 023574 88 MDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLE--VSDEGDV--LYVFPNNYRA 147 (280)
Q Consensus 88 m~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLq--VsesGEI--lYvFP~~fRs 147 (280)
+..-++.....|..++|...|++..++.+.|..|..+.-=.++ .+++|.+ .|.|-.-|..
T Consensus 42 ~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~ek 105 (135)
T 2v79_A 42 KMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWGK 105 (135)
T ss_dssp HHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHHH
T ss_pred HHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHHH
Confidence 3443434577899999999999999999999999998544442 2445665 5555444443
No 200
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=46.46 E-value=13 Score=29.30 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=26.2
Q ss_pred CCchHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 79 LPADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 79 l~~~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
...+.+.+|++| +.+.|+ .+|+.|||..+|++.-.
T Consensus 6 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~t 45 (203)
T 3cdl_A 6 LTDQKRESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRT 45 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHH
T ss_pred cchhHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHH
Confidence 344566777665 456787 69999999999988754
No 201
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=46.38 E-value=12 Score=29.99 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=23.7
Q ss_pred HHHHHHH----HHHHcCC-ceehhhhhhhcCCCHHH
Q 023574 83 VRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 83 ~~~~im~----Ave~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
.+.+|++ .+.+.|+ .+|+.|||.++|++...
T Consensus 29 ~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~t 64 (217)
T 3hta_A 29 RRQRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGS 64 (217)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHcCCCcch
Confidence 4556655 4567788 79999999999988653
No 202
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=46.16 E-value=12 Score=31.50 Aligned_cols=56 Identities=14% Similarity=0.079 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHHc--CCceehhhhhhhcCCCHHHHHHHHHH--HHhhcCCceEeccCCcE
Q 023574 81 ADVRNRAMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQA--LAADTDGFLEVSDEGDV 137 (280)
Q Consensus 81 ~~~~~~im~Ave~l--g~RvTvGDVAa~aGL~L~~Ae~aL~a--LAsD~~GhLqVsesGEI 137 (280)
.+.+.++.+++.+. |.-+|-||||...|.+-..+-.++.. ++-...||==|..+| +
T Consensus 70 t~fq~~V~~~l~~IP~G~~~tYg~iA~~~g~p~RaVG~A~~~np~~~~iPcHRVv~~~G-l 129 (156)
T 1wrj_A 70 NEFRIRVFKEVMRIKWGEVRTYKQVADAVKTSPRAVGTALSKNNVLLIIPCHRVIGEKS-L 129 (156)
T ss_dssp CHHHHHHHHHHTTSCTTCCEEHHHHHHHTTSCHHHHHHHHHTCSBTTTSCGGGEECSSS-C
T ss_pred CHHHHHHHHHHhCCCCCceEcHHHHHHHhCCCccHHHHHHHhCCCCCccCCCeEECCCC-C
Confidence 46889999999998 66788899999999987444444422 233469999999999 5
No 203
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=45.95 E-value=95 Score=23.49 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=31.1
Q ss_pred CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 023574 95 NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (280)
Q Consensus 95 g~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVse 133 (280)
++.+|+.|+|...|++...+.+.|..|..+ |-++...
T Consensus 20 ~~~~~~~ela~~l~vs~~tvs~~l~~Le~~--Glv~r~~ 56 (142)
T 1on2_A 20 KGYARVSDIAEALAVHPSSVTKMVQKLDKD--EYLIYEK 56 (142)
T ss_dssp HSSCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEET
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEEee
Confidence 457999999999999999999999999874 6665543
No 204
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=45.90 E-value=91 Score=23.28 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++..+.+.+ .+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 43 ~~~~iL~~l~~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~~--Glv~r 88 (150)
T 2rdp_A 43 PQFVALQWLLEEG-DLTVGELSNKMYLACSTTTDLVDRMERN--GLVAR 88 (150)
T ss_dssp HHHHHHHHHHHHC-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCchhHHHHHHHHHHC--CCeee
Confidence 4567888888865 6999999999999999999999999987 55544
No 205
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=45.70 E-value=15 Score=28.90 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=22.8
Q ss_pred hHHHHHHH----HHHHcCC-ceehhhhhhhcCCCHH
Q 023574 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLN 112 (280)
Q Consensus 82 ~~~~~im~----Ave~lg~-RvTvGDVAa~aGL~L~ 112 (280)
..+++|++ .+.+.|+ .+|+.|||.++|++..
T Consensus 28 ~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~ 63 (215)
T 2qko_A 28 ERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKG 63 (215)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTT
T ss_pred HHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcc
Confidence 34555554 5667787 4999999999998753
No 206
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=45.70 E-value=13 Score=29.41 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=24.9
Q ss_pred chHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
.+.+.+|++| +.+.|+. +|+.|||..+|++...
T Consensus 11 ~~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~t 48 (211)
T 3bhq_A 11 ARKDREIIQAATAAFISKGYDGTSMEEIATKAGASKQT 48 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHH
T ss_pred HhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHH
Confidence 4556666655 4567886 9999999999998654
No 207
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=45.65 E-value=13 Score=29.30 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=25.4
Q ss_pred chHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
++.|++|++| +.+.|+ .+|+.|||.++|++...
T Consensus 9 ~~tR~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t 46 (210)
T 3vib_A 9 LKTKEHLMLAALETFYRKGIARTSLNEIAQAAGVTRDA 46 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHH
Confidence 4567777765 456787 68999999999998754
No 208
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=45.39 E-value=11 Score=32.35 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.7
Q ss_pred ceehhhhhhhcCCCHHHHHHHHH
Q 023574 97 RVTIGDVAGKAGLKLNEAQKALQ 119 (280)
Q Consensus 97 RvTvGDVAa~aGL~L~~Ae~aL~ 119 (280)
++|+.|||..+|+|...+-++|.
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln 24 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVN 24 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Confidence 58999999999999999988883
No 209
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=45.28 E-value=14 Score=29.07 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=24.0
Q ss_pred hHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
..+.+|++| +.+.|+. +|+.|||..+|++.-.
T Consensus 14 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t 50 (204)
T 2ibd_A 14 GRRTELLDIAATLFAERGLRATTVRDIADAAGILSGS 50 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHH
T ss_pred hhHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCchh
Confidence 456666555 4567876 9999999999988643
No 210
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=44.98 E-value=15 Score=29.46 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=24.9
Q ss_pred chHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
.+.+++|++| +.+.|+. +|+.|||.++|++...
T Consensus 34 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~AGvs~~t 71 (221)
T 3g7r_A 34 SEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRAT 71 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHH
Confidence 4566666655 5567875 9999999999988654
No 211
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=44.90 E-value=15 Score=29.62 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=23.7
Q ss_pred hHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHH
Q 023574 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLN 112 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~ 112 (280)
+.+.+|++| +.+.|+. +|+.|||.++|++..
T Consensus 43 ~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~ 78 (229)
T 3bni_A 43 ERLTRILDACADLLDEVGYDALSTRAVALRADVPIG 78 (229)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCch
Confidence 456666665 4556876 999999999998864
No 212
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=44.51 E-value=8.7 Score=29.46 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 023574 84 RNRAMDAVDACNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (280)
Q Consensus 84 ~~~im~Ave~lg~Rv-TvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVse 133 (280)
+.+|+..+ +-|.++ |..++|.+-|++...++++|..|.++ |-++...
T Consensus 30 ~~~I~~~l-~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~--GlI~~~~ 77 (102)
T 2b0l_A 30 IEHIFEEL-DGNEGLLVASKIADRVGITRSVIVNALRKLESA--GVIESRS 77 (102)
T ss_dssp HHHHTTSS-BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEEE
T ss_pred HHHHHhhh-cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEEe
Confidence 55555222 345666 99999999999999999999999987 4576665
No 213
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=43.85 E-value=43 Score=29.54 Aligned_cols=68 Identities=13% Similarity=0.326 Sum_probs=46.7
Q ss_pred ccccCCCCchHHHHHHHHHHHcCCceehhhhhhhcCCC---HHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 023574 73 IVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLK---LNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (280)
Q Consensus 73 ~v~~~~l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~---L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP 142 (280)
.+.+--|-..++-.|.+++.+.|+..|+.|+|.++|++ ..-.++=|+.|++ -|-|+..++|+=.|.-.
T Consensus 27 ~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~--~gll~~~~~~~~~y~~t 97 (352)
T 1fp2_A 27 FIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAH--NGFFEIITKEEESYALT 97 (352)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHH--TTSEEEEESSSEEEEEC
T ss_pred HHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHh--CCeEEEecCCCCeEeCC
Confidence 34444455566777888888876789999999999995 6666677777776 56666553233356543
No 214
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=43.80 E-value=1.1e+02 Score=23.75 Aligned_cols=46 Identities=9% Similarity=0.213 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++.++.+.+ .+|+.|+|...|++...+-+.|..|..+ |-++-
T Consensus 46 ~~~~iL~~L~~~~-~~t~~eLa~~l~is~~tvs~~l~~Le~~--GlV~r 91 (168)
T 2nyx_A 46 PQFRTLVILSNHG-PINLATLATLLGVQPSATGRMVDRLVGA--ELIDR 91 (168)
T ss_dssp HHHHHHHHHHHHC-SEEHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEe
Confidence 4567888888766 6999999999999999999999999887 44443
No 215
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=43.49 E-value=16 Score=29.58 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=23.8
Q ss_pred hHHHHHHH----HHHHcCC-ceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~----Ave~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
+.+.+|++ .+.+.|+ .+|+.|||.++|++...
T Consensus 13 ~~r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t 49 (231)
T 2qib_A 13 ERRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPL 49 (231)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHH
Confidence 34555554 4566788 79999999999987643
No 216
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=43.40 E-value=69 Score=30.25 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcchHH
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~~fRs 147 (280)
.++.+.+..+-+-=-++|+.++|...|++.+++|+.|..+-.|.-=+=..+....+|+....+-|.
T Consensus 301 ~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~ 366 (394)
T 3txn_A 301 TMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVD 366 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC----
T ss_pred HHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchh
Confidence 333444333334457899999999999999999999999999864333577777788888665444
No 217
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=43.11 E-value=15 Score=28.90 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=24.1
Q ss_pred chHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHH
Q 023574 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLN 112 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~ 112 (280)
.+.+.+|++| +.+.|+. +|+.|||.++|++.-
T Consensus 9 ~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskg 45 (197)
T 2f07_A 9 SGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQG 45 (197)
T ss_dssp CSHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCch
Confidence 3456666665 5567874 999999999998754
No 218
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=42.84 E-value=15 Score=30.15 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=23.0
Q ss_pred chHHHHHHHHH----HHcCC-ceehhhhhhhcCCCH
Q 023574 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKL 111 (280)
Q Consensus 81 ~~~~~~im~Av----e~lg~-RvTvGDVAa~aGL~L 111 (280)
...+.+|++|. .+.|+ .+|+.|||.++|++.
T Consensus 45 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~aGvs~ 80 (245)
T 3aqt_A 45 EQTRARLITSARTLMAERGVDNVGIAEITEGANIGT 80 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhCCCh
Confidence 34566666554 45587 799999999999874
No 219
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=42.58 E-value=14 Score=29.23 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=23.2
Q ss_pred HHHHHHH----HHHHcCCc-eehhhhhhhcCCCHHH
Q 023574 83 VRNRAMD----AVDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 83 ~~~~im~----Ave~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
.+++|++ .+.+.||. +|+.|||.++|++.-.
T Consensus 10 tr~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gt 45 (203)
T 2np5_A 10 SPERLAAALFDVAAESGLEGASVREVAKRAGVSIGA 45 (203)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred hHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHH
Confidence 3555554 45678876 9999999999988643
No 220
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=42.33 E-value=51 Score=24.99 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
.+-.++..+...+ .+|+.|+|...|++...+-+.|..|..+
T Consensus 48 ~~~~iL~~l~~~~-~~t~~ela~~l~~s~~tvs~~l~~Le~~ 88 (153)
T 2pex_A 48 PQYLVMLVLWETD-ERSVSEIGERLYLDSATLTPLLKRLQAA 88 (153)
T ss_dssp HHHHHHHHHHHSC-SEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-CcCHHHHHHHhCCCcccHHHHHHHHHHC
Confidence 4567888887754 6999999999999999999999999887
No 221
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=42.32 E-value=16 Score=29.45 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=24.1
Q ss_pred hHHHHHHH----HHHHcCCc-eehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMD----AVDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~----Ave~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
..+.+|++ .+.+.|+. +|+.|||.++|++...
T Consensus 40 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t 76 (225)
T 2id3_A 40 RIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTT 76 (225)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHH
Confidence 44556655 45566876 9999999999998754
No 222
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=42.28 E-value=16 Score=28.71 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=21.1
Q ss_pred HHHHHHHcCC-ceehhhhhhhcCCCHHH
Q 023574 87 AMDAVDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 87 im~Ave~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
.++.+.+.|+ .+|+.|||.++|++.-.
T Consensus 16 A~~lf~~~G~~~ts~~~IA~~aGvs~gt 43 (197)
T 2gen_A 16 ALACFSEHGVDATTIEMIRDRSGASIGS 43 (197)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHHCCCHHH
T ss_pred HHHHHHHcCcccCCHHHHHHHHCCChHH
Confidence 3455667898 69999999999988643
No 223
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=42.26 E-value=15 Score=26.21 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=18.8
Q ss_pred eehhhhhhhcCCCHHHHHHHHH
Q 023574 98 VTIGDVAGKAGLKLNEAQKALQ 119 (280)
Q Consensus 98 vTvGDVAa~aGL~L~~Ae~aL~ 119 (280)
+|+.|||..+|++...+-+.|.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 5889999999999998877663
No 224
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=42.20 E-value=9.4 Score=29.36 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=24.0
Q ss_pred hHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
+.+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 20 ~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t 56 (203)
T 3mnl_A 20 ERRKRILDATMAIASKGGYEAVQMRAVADRADVAVGT 56 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCHHHHHHHcCCChhH
Confidence 446666655 5566875 9999999999998654
No 225
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=42.18 E-value=14 Score=28.94 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=23.2
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~ 112 (280)
+.+.+|++| +.+.|+ .+|+.|||.++|++.-
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskg 46 (210)
T 2xdn_A 11 ETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRG 46 (210)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHcCcccCcHHHHHHHHCCChH
Confidence 456666655 456787 5999999999998753
No 226
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=42.14 E-value=99 Score=22.60 Aligned_cols=46 Identities=13% Similarity=0.304 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++..+...+ ..|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 34 ~~~~iL~~l~~~~-~~~~~ela~~l~~~~~tvs~~l~~L~~~--gli~r 79 (139)
T 3bja_A 34 VQFGVIQVLAKSG-KVSMSKLIENMGCVPSNMTTMIQRMKRD--GYVMT 79 (139)
T ss_dssp HHHHHHHHHHHSC-SEEHHHHHHHCSSCCTTHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHHCCChhHHHHHHHHHHHC--CCeee
Confidence 4567888887755 6999999999999999999999999887 55554
No 227
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=42.09 E-value=13 Score=30.47 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=24.9
Q ss_pred chHHHHHHHHH----HHcCC-ceehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~Av----e~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
.+.+.+|++|. .+.|+ .+|+.|||.++|++...
T Consensus 42 ~~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~t 79 (255)
T 3g1o_A 42 DDRELAILATAENLLEDRPLADISVDDLAKGAGISRPT 79 (255)
T ss_dssp CHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHH
Confidence 45566766655 45688 79999999999998643
No 228
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=41.87 E-value=17 Score=28.40 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=23.1
Q ss_pred hHHHHHHH----HHHHcCC-ceehhhhhhhcCCCH
Q 023574 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKL 111 (280)
Q Consensus 82 ~~~~~im~----Ave~lg~-RvTvGDVAa~aGL~L 111 (280)
+.+.+|++ .+.+.|+ .+|+.|||.++|++.
T Consensus 14 ~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~ 48 (203)
T 3ccy_A 14 NIRDTIIERAAAMFARQGYSETSIGDIARACECSK 48 (203)
T ss_dssp THHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCG
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCc
Confidence 45666666 5667887 599999999999874
No 229
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=41.72 E-value=51 Score=27.03 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=26.6
Q ss_pred CceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 96 RRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 96 ~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
..+|..|+|...|++...+-+.|..|..+
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 220 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREK 220 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHC
Confidence 46799999999999999999999999876
No 230
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=41.72 E-value=16 Score=29.30 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=23.9
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
..+.+|++| +.+.|| .+|+.|||..+|++.-.
T Consensus 9 ~~r~~Il~aA~~lf~~~Gy~~ts~~~IA~~AGvskgt 45 (215)
T 1ui5_A 9 QTRATIIGAAADLFDRRGYESTTLSEIVAHAGVTKGA 45 (215)
T ss_dssp THHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchh
Confidence 445666554 556787 79999999999998643
No 231
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=41.50 E-value=1e+02 Score=22.72 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.+-.++..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 34 ~~~~iL~~l~~~~-~~~~~~la~~l~~s~~tvs~~l~~L~~~--glv~r~ 80 (145)
T 2a61_A 34 AQFDILQKIYFEG-PKRPGELSVLLGVAKSTVTGLVKRLEAD--GYLTRT 80 (145)
T ss_dssp HHHHHHHHHHHHC-CBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCCCchhHHHHHHHHHHC--CCeeec
Confidence 4567888888754 6999999999999999999999999987 555543
No 232
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=41.34 E-value=99 Score=24.01 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=39.0
Q ss_pred HHHHHHHHHH----cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 023574 84 RNRAMDAVDA----CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (280)
Q Consensus 84 ~~~im~Ave~----lg~Rv-TvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP 142 (280)
-..|.+.+.. -|.++ |..++|.+-|+|...++++|..|.++ |-++... |-=.||-+
T Consensus 17 ~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~--Gli~~~~-g~G~~V~~ 77 (126)
T 3by6_A 17 VDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQ--KVIRTIP-GKGTFITG 77 (126)
T ss_dssp HHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET-TTEEEECS
T ss_pred HHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEec-CCeEEEcc
Confidence 3444444443 35567 99999999999999999999999876 4454433 33355554
No 233
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=41.26 E-value=11 Score=29.02 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=23.2
Q ss_pred hHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
+.+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 3 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t 39 (189)
T 3geu_A 3 AMKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKAS 39 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHH
Confidence 345555555 4556766 9999999999988653
No 234
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=41.22 E-value=42 Score=27.62 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC
Q 023574 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (280)
Q Consensus 86 ~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesG 135 (280)
-+.-+++. .+.||-++...||++-..+|..|.+|. |.|=.++--.+|
T Consensus 24 yla~lId~--~~~nvp~L~~~TGmPRRTiQd~I~aL~-elgI~~~FvQ~G 70 (117)
T 3ke2_A 24 YLAHLMDD--ARHNLLSLGKLTGMPRRTLQDAIASFA-DIGIEVEFVQDG 70 (117)
T ss_dssp HHHHHHHH--SCCCHHHHHHHHCCCHHHHHHHHHTGG-GGTCEEEEECCT
T ss_pred HHHHHHhc--CCCCHHHHHHHHCCCHhHHHHHHHHhh-hCCeEEEEEecc
Confidence 34667777 777999999999999999999999999 777666644444
No 235
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=41.19 E-value=9.9 Score=28.85 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=23.5
Q ss_pred hHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
+.+++|++| +.+.|+. +|+.|||.++|++...
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t 44 (195)
T 3pas_A 8 SKRIAFLEATVREVADHGFSATSVGKIAKAAGLSPAT 44 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHcChHhcCHHHHHHHhCCCchH
Confidence 345666555 4555865 9999999999998654
No 236
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=41.17 E-value=18 Score=28.49 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=22.7
Q ss_pred hHHHHHHHHHH-----HcCC-ceehhhhhhhcCCCH
Q 023574 82 DVRNRAMDAVD-----ACNR-RVTIGDVAGKAGLKL 111 (280)
Q Consensus 82 ~~~~~im~Ave-----~lg~-RvTvGDVAa~aGL~L 111 (280)
..+.+|++|.. +.|+ .+|+.|||.++|++.
T Consensus 11 ~~r~~Il~aa~~l~~~~~G~~~~ti~~Ia~~Agvs~ 46 (220)
T 3lsj_A 11 QTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVP 46 (220)
T ss_dssp HHHHHHHHHHHHHTTTSCCGGGCCHHHHHHHHTSCG
T ss_pred hHHHHHHHHHHHHHHhCCCcccCCHHHHHHHhCCCh
Confidence 45667766654 5564 799999999999875
No 237
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=41.14 E-value=11 Score=28.83 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=24.5
Q ss_pred hHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHHH
Q 023574 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~A 114 (280)
..+.+|++| +.+.|+. +|+.|||.++|++....
T Consensus 14 ~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~ 51 (156)
T 3ljl_A 14 ITIQKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGI 51 (156)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHhChhhcCHHHHHHHHCCCHHHH
Confidence 345566555 5566875 89999999999987654
No 238
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=40.93 E-value=16 Score=29.39 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHcCCc-eehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDAVDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~Ave~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
..-...++.+.+.|+. +|+.|||.++|++...
T Consensus 34 ~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t 66 (230)
T 2iai_A 34 TLLSVAVQVFIERGYDGTSMEHLSKAAGISKSS 66 (230)
T ss_dssp CHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHHCCChhH
Confidence 3445666777788985 9999999999988653
No 239
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=40.87 E-value=12 Score=34.69 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=26.5
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHH
Q 023574 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALA 122 (280)
Q Consensus 85 ~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLA 122 (280)
..|++.+.+..+.+|+.|++..||+..+|+-.+|+.|-
T Consensus 196 ~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l~ 233 (278)
T 2pq8_A 196 WVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSLN 233 (278)
T ss_dssp HHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHCC
Confidence 55677776667799999999999999999999998763
No 240
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=40.82 E-value=80 Score=30.56 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec------cCCcEEEEcCcchHHH
Q 023574 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS------DEGDVLYVFPNNYRAK 148 (280)
Q Consensus 86 ~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs------esGEIlYvFP~~fRs~ 148 (280)
||++.+...|. +|--+||..++++.+++++.|-.|..+.--++|-- +.+--.|.|=-|....
T Consensus 364 RI~r~L~~~~~-l~d~~ia~~a~i~~k~vR~~Ly~L~~~g~v~~qevp~~~d~~~~~~~ylW~~~~~~~ 431 (534)
T 2xub_A 364 RIFRLVLQKKH-IEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTVNILSA 431 (534)
T ss_dssp HHHHHHHHC----CHHHHHHHHCSCHHHHHHHHHHHHHTTCC---------------------CCHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEEEccCCCCCCCcceEEEEEEcHHHH
Confidence 55666666665 99999999999999999999999999877776633 2356788885555543
No 241
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=40.77 E-value=25 Score=30.93 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=46.7
Q ss_pred cccccCCCCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 023574 72 RIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (280)
Q Consensus 72 ~~v~~~~l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP 142 (280)
|.+.+.-|-..++-.|.+++. ++..|+.|+|.+.|++..-.++=|+.|++ -|.|+..++|+..|.-.
T Consensus 26 ~~~~~~~l~~~~~l~i~~~l~--~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~--~Gll~~~~~~~~~y~~t 92 (374)
T 1qzz_A 26 NLVTPMALRVAATLRLVDHLL--AGADTLAGLADRTDTHPQALSRLVRHLTV--VGVLEGGEKQGRPLRPT 92 (374)
T ss_dssp CCHHHHHHHHHHHTTHHHHHH--TTCCSHHHHHHHHTCCHHHHHHHHHHHHH--TTSEECCCC-CCCCEEC
T ss_pred hhHHHHHHHHHHHcChHHHHh--CCCCCHHHHHHHhCcCHHHHHHHHHHHhh--CCCEEEeCCCCeEEEEC
Confidence 334444455666777888884 35699999999999999999888888876 45666545553345543
No 242
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=40.51 E-value=44 Score=30.84 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC-cEEEEcCcchHH
Q 023574 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG-DVLYVFPNNYRA 147 (280)
Q Consensus 81 ~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesG-EIlYvFP~~fRs 147 (280)
.....++++.+.+ ++.+|+.+++...|++-..|++.|..|... |.|+-...| .-+|.+++-++-
T Consensus 296 ~~~~~~ll~~l~~-~p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~--GiL~~~~~gR~~~y~~~~~~~~ 360 (373)
T 2qc0_A 296 KIYSHELVQVIFE-QPYCRIQNLVESGLAKRQTASVYLKQLCDI--GVLEEVQSGKEKLFVHPKFVTL 360 (373)
T ss_dssp TTCCHHHHHHHHH-CSEEEHHHHHHTSSSCHHHHHHHHHHHHHT--TSCEEC--CCSCEEECHHHHHH
T ss_pred chhHHHHHHHHHh-CCcccHHHHHHHhCCCHHHHHHHHHHHHHC--CcEEEecCCCceEEehHHHHHH
Confidence 3344667777775 467999999999999999999999999875 566655443 467887665543
No 243
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=40.32 E-value=34 Score=21.08 Aligned_cols=37 Identities=5% Similarity=0.036 Sum_probs=26.4
Q ss_pred CCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHH
Q 023574 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKAL 118 (280)
Q Consensus 79 l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL 118 (280)
+.++....+++.++ .| .|+.+||...|++.....+-|
T Consensus 6 ~~~~~~~~i~~l~~-~g--~s~~~ia~~lgvs~~Tv~r~l 42 (52)
T 1jko_C 6 INKHEQEQISRLLE-KG--HPRQQLAIIFGIGVSTLYRYF 42 (52)
T ss_dssp SCTTHHHHHHHHHH-TT--CCHHHHHHTTSCCHHHHHHHS
T ss_pred CCHHHHHHHHHHHH-cC--CCHHHHHHHHCCCHHHHHHHH
Confidence 44444556666554 33 899999999999988876654
No 244
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=40.03 E-value=31 Score=25.19 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=33.2
Q ss_pred HHHHHHHHHcC-------C--ceehhhhhhhcCCCHHHHHHHHHHHHhhcC
Q 023574 85 NRAMDAVDACN-------R--RVTIGDVAGKAGLKLNEAQKALQALAADTD 126 (280)
Q Consensus 85 ~~im~Ave~lg-------~--RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~ 126 (280)
|++.+.+.+.| . ..|+.++|..-|+++++.-++|.+.+.+..
T Consensus 19 P~~~~vf~~~G~~c~~C~~a~~~tL~~Aa~~~gid~~~ll~~Ln~~~~~~~ 69 (73)
T 2k5e_A 19 PGVAGVLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILRDLNALALEHH 69 (73)
T ss_dssp THHHHHHHHTTGGGGGTTTGGGSBHHHHHHHTTCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 45555665544 3 589999999999999999999998887653
No 245
>2g7h_A Methylated-DNA--protein-cysteine methyltransferase; protein structure, DNA repair, DNA methyltransferase; NMR {Methanocaldococcus jannaschii}
Probab=39.93 E-value=11 Score=32.44 Aligned_cols=73 Identities=22% Similarity=0.250 Sum_probs=49.5
Q ss_pred chHHHHHHHHHHHc--CCceehhhhhhhcCCCHHHHHHHHHH--HHhhcCCceEeccCCcEEEEcCcchHHHHhhhhHHH
Q 023574 81 ADVRNRAMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQA--LAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSFRL 156 (280)
Q Consensus 81 ~~~~~~im~Ave~l--g~RvTvGDVAa~aGL~L~~Ae~aL~a--LAsD~~GhLqVsesGEIlYvFP~~fRs~l~~Ks~r~ 156 (280)
.+.+.++.+++.+. |.-+|-||||...|.+...+-.+|.. ++-...||==|..+| + --| +.-+..|.+.+
T Consensus 78 t~Fq~~Vw~~l~~IP~G~t~TYg~iA~~~G~p~RaVG~Al~~Np~~i~iPCHRVv~~~G-l-~gy----~gG~~~K~~LL 151 (167)
T 2g7h_A 78 PEFTKKVLDIVKDIEFGKTLTYGDIAKKLNTSPRAVGMALKRNPLPLIIPCHRVVAKNS-L-GGY----SYGLDKKKFIL 151 (167)
T ss_dssp SSCCHHHHHHHTTCCTTCCEEHHHHHHHHTSCHHHHHHHHHTCSCTTTSGGGGEECSSS-C-CCS----SSCSHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEeeHHHHHHHhCCCHHHHHHHHHhCCCCCccCceeEECCCC-C-CCC----CccHHHHHHHH
Confidence 66889999999998 66688999999999994444334422 223468999999999 4 334 33233354444
Q ss_pred hHH
Q 023574 157 KVE 159 (280)
Q Consensus 157 rl~ 159 (280)
.+|
T Consensus 152 ~~E 154 (167)
T 2g7h_A 152 ERE 154 (167)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 246
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=39.92 E-value=14 Score=31.77 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.9
Q ss_pred eehhhhhhhcCCCHHHHHHHHH
Q 023574 98 VTIGDVAGKAGLKLNEAQKALQ 119 (280)
Q Consensus 98 vTvGDVAa~aGL~L~~Ae~aL~ 119 (280)
+|+.|||..+|+|...+-++|.
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn 22 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVIN 22 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 5899999999999999988884
No 247
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=39.86 E-value=19 Score=28.42 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=24.7
Q ss_pred chHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
...+.+|++| +.+.|+. +|+.|||..+|++.-.
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgt 47 (210)
T 2wui_A 10 QKTRDGILDAAERVFLEKGVGTTAMADLADAAGVSRGA 47 (210)
T ss_dssp THHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHH
Confidence 3456677665 4567875 9999999999998754
No 248
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=39.64 E-value=14 Score=29.63 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=22.9
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKL 111 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L 111 (280)
+.+.+|++| +.+.|| .+|+.|||.++|++.
T Consensus 35 ~~r~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~ 69 (237)
T 3kkd_A 35 QRRQAILDAAMRLIVRDGVRAVRHRAVAAEAQVPL 69 (237)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHHhcChhhcCHHHHHHHhCCCh
Confidence 456666655 456787 799999999999764
No 249
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=39.61 E-value=20 Score=27.92 Aligned_cols=32 Identities=25% Similarity=0.484 Sum_probs=23.8
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
+.+.+|++| +.+.|+ .+|+.|||.++|++...
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t 47 (212)
T 2ras_A 11 AMRARLVDVAQAIVEERGGAGLTLSELAARAGISQAN 47 (212)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHH
Confidence 345566554 456786 69999999999988754
No 250
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=39.61 E-value=18 Score=28.25 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=23.2
Q ss_pred hHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHH
Q 023574 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLN 112 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~ 112 (280)
+.+.+|++| +.+.|+. +|+.|||..+|++.-
T Consensus 10 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~g 45 (194)
T 2nx4_A 10 ERRRSITAAAWRLIAARGIEAANMRDIATEAGYTNG 45 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcc
Confidence 345666555 5567875 999999999998764
No 251
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=39.35 E-value=11 Score=28.87 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=24.4
Q ss_pred hHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHHH
Q 023574 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~A 114 (280)
..+.+|++| +.+.|+. +|+.|||.++|++....
T Consensus 7 ~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tl 44 (186)
T 2jj7_A 7 QTMENILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMA 44 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChhhh
Confidence 345555554 5566875 99999999999988654
No 252
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=39.35 E-value=21 Score=28.44 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=24.6
Q ss_pred hHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHHH
Q 023574 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~A 114 (280)
+.+.+|++| +.+.|+. +|+.|||.++|++.-..
T Consensus 22 ~~r~~Il~AA~~lf~e~G~~~~s~~~IA~~AGVsk~tl 59 (207)
T 3bjb_A 22 ARHVRMLEAAIELATEKELARVQMHEVAKRAGVAIGTL 59 (207)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHH
Confidence 345666554 5668885 89999999999987654
No 253
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=39.21 E-value=20 Score=27.96 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=22.3
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKL 111 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L 111 (280)
..+.+|++| +.+.|+ .+|+.|||..+|++.
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~ 46 (197)
T 2hyt_A 12 ETRATLLATARKVFSERGYADTSMDDLTAQASLTR 46 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCH
Confidence 345556554 566787 699999999999874
No 254
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=39.17 E-value=1.2e+02 Score=22.65 Aligned_cols=64 Identities=13% Similarity=0.063 Sum_probs=51.6
Q ss_pred ccCCCCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC-CcEE
Q 023574 75 ESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE-GDVL 138 (280)
Q Consensus 75 ~~~~l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVses-GEIl 138 (280)
-.+.|...+.+.-+..+.+.=-++|+..+|..-||+.+++|+-|..+..+..=+=..+.- |-|.
T Consensus 8 ~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~ 72 (84)
T 1ufm_A 8 GSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVH 72 (84)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEE
T ss_pred cHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEE
Confidence 356677888888889999998999999999999999999999999988886444455553 4443
No 255
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=38.73 E-value=8.2 Score=30.99 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~ 125 (280)
..+.+|++ .-+.|.+.|..++|.+-|+|...++++|..|.++.
T Consensus 13 ~l~~~Il~-~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~G 55 (163)
T 2gqq_A 13 RIDRNILN-ELQKDGRISNVELSKRVGLSPTPCLERVRRLERQG 55 (163)
T ss_dssp SHHHHHHH-HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHT
T ss_pred HHHHHHHH-HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45678888 44568889999999999999999999999998773
No 256
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=38.59 E-value=31 Score=30.14 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=44.0
Q ss_pred CCcccccCCCCchHHHHHHHHHHHcCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 023574 70 PGRIVESDKLPADVRNRAMDAVDACNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (280)
Q Consensus 70 ~~~~v~~~~l~~~~~~~im~Ave~lg~Rv-TvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVse 133 (280)
||=.+.-+.-......+|++.+++.|... ++.|++...|++-.++++.|..| .+.|--.+|++
T Consensus 129 ~~h~~~~~~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l-~~~g~lv~l~~ 192 (258)
T 1lva_A 129 AGFTPSFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYL-VREGVLVKIND 192 (258)
T ss_dssp TTCCCCCCHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHH-HHTTSEEESSS
T ss_pred CCCccCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHH-HHCCCEEEecC
Confidence 33334444444556778888888888877 89999999999999996555555 44555566654
No 257
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=38.22 E-value=50 Score=23.94 Aligned_cols=39 Identities=8% Similarity=0.088 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcC--CceehhhhhhhcCCCHHHHHHHHHHH
Q 023574 83 VRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQAL 121 (280)
Q Consensus 83 ~~~~im~Ave~lg--~RvTvGDVAa~aGL~L~~Ae~aL~aL 121 (280)
.-.++++.+++.= ...|+.|+|...|++....++.+...
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3467778887763 37999999999999998887766543
No 258
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=38.21 E-value=36 Score=25.62 Aligned_cols=46 Identities=7% Similarity=0.131 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++..+.+.+ .+|++|+|...|++...+-+.|..|..+ |-++-
T Consensus 38 ~~~~vL~~l~~~~-~~t~~eLa~~l~~~~~tvs~~l~~L~~~--Glv~r 83 (142)
T 3ech_A 38 PDVHVLKLIDEQR-GLNLQDLGRQMCRDKALITRKIRELEGR--NLVRR 83 (142)
T ss_dssp HHHHHHHHHHHTT-TCCHHHHHHHHC---CHHHHHHHHHHHT--TSEEC
T ss_pred HHHHHHHHHHhCC-CcCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEee
Confidence 4467888888876 6999999999999999999999999876 44443
No 259
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=38.05 E-value=21 Score=28.01 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=25.0
Q ss_pred chHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHHH
Q 023574 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~A 114 (280)
.+.+.+|++| +.+.|+ .+|+.|||.++|++....
T Consensus 14 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~ 52 (221)
T 3c2b_A 14 SPRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESL 52 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHH
Confidence 3456666554 566787 499999999999987643
No 260
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=38.02 E-value=19 Score=28.40 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=23.2
Q ss_pred HHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 83 VRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 83 ~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
.+.+|++| +.+.|+ .+|+.|||.++|++.-.
T Consensus 12 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgt 47 (219)
T 2w53_A 12 TREGILDAAEACFHEHGVARTTLEMIGARAGYTRGA 47 (219)
T ss_dssp CHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchH
Confidence 45666555 556787 59999999999988643
No 261
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=37.99 E-value=46 Score=25.69 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.+-.++..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++..
T Consensus 54 ~q~~vL~~l~~~~-~~t~~eLa~~l~~~~~~vs~~l~~Le~~--Glv~r~ 100 (161)
T 3e6m_A 54 PKLRLLSSLSAYG-ELTVGQLATLGVMEQSTTSRTVDQLVDE--GLAARS 100 (161)
T ss_dssp HHHHHHHHHHHHS-EEEHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEC
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEee
Confidence 4567888888766 7999999999999999999999999876 555544
No 262
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=37.96 E-value=20 Score=32.14 Aligned_cols=45 Identities=20% Similarity=0.232 Sum_probs=35.9
Q ss_pred CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 023574 96 RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (280)
Q Consensus 96 ~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~ 143 (280)
+..|+.|+|.++|++....++=|+.|++ -|.|+-+++|. .|.-.+
T Consensus 70 g~~t~~eLA~~~g~~~~~l~rlLr~L~~--~g~l~~~~~~~-~y~~t~ 114 (369)
T 3gwz_A 70 GPRTATALAEATGAHEQTLRRLLRLLAT--VGVFDDLGHDD-LFAQNA 114 (369)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSSEECSSTT-EEECCH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHh--CCCEEEeCCCc-eEecCH
Confidence 4799999999999999999999999988 57777766654 355443
No 263
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=37.77 E-value=6.9 Score=38.76 Aligned_cols=56 Identities=18% Similarity=0.306 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc---------CCceEeccCCc
Q 023574 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT---------DGFLEVSDEGD 136 (280)
Q Consensus 81 ~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~---------~GhLqVsesGE 136 (280)
+++..+|+++++..+..++..++|...|++.+.+-.++..|.++. .=..+.|++|+
T Consensus 4 ~~~~~~iL~~l~~~~~~~~~~~~a~~~~~~~~~v~~~~~~L~~~~~~v~~~~~~~~~~~Lt~eg~ 68 (508)
T 3l4g_A 4 GQVAELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGE 68 (508)
T ss_dssp -----------------------------------------------------------------
T ss_pred hHHHHHHHHHHHhcCCCcCHHHHHHHcCCCHHHHHHHHHHHHhCCCeEEEEEEEEEEEEECHHHH
Confidence 457889999999877567889999999999999999998888763 33455566664
No 264
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=37.76 E-value=44 Score=29.31 Aligned_cols=47 Identities=11% Similarity=0.080 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.+-+|+.++.+.+ +.|+.|+|.+.|++...+.+.|..|... |-++-.
T Consensus 153 ~~~~IL~~L~~~~-~~s~~eLA~~lglsksTv~r~L~~Le~~--GlV~r~ 199 (244)
T 2wte_A 153 EEMKLLNVLYETK-GTGITELAKMLDKSEKTLINKIAELKKF--GILTQK 199 (244)
T ss_dssp HHHHHHHHHHHHT-CBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEe
Confidence 4567888887654 6999999999999999999999999876 555554
No 265
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=37.50 E-value=22 Score=29.43 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=24.4
Q ss_pred chHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
.+.+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 47 ~~tr~~Il~AA~~lf~e~G~~~~Ti~~IA~~AGvs~~t 84 (260)
T 2of7_A 47 TRTREAIRAATYGLIRQQGYEATTVEQIAERAEVSPST 84 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccHHHHHHHhCCChHH
Confidence 3456666655 5567875 9999999999988653
No 266
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=37.43 E-value=25 Score=26.72 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcC-CceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023574 83 VRNRAMDAVDACN-RRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (280)
Q Consensus 83 ~~~~im~Ave~lg-~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~ 125 (280)
.+-.++..+.+.+ +.+|+.|+|...|++...+-+.|..|..+.
T Consensus 42 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~G 85 (148)
T 3jw4_A 42 QQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKG 85 (148)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCC
Confidence 4567888888875 789999999999999999999999998873
No 267
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=37.42 E-value=19 Score=29.19 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=23.5
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~ 112 (280)
+.+.+|++| +.+.|+ .+|+.|||.++|++..
T Consensus 7 ~~r~~Il~AA~~lF~e~G~~~ts~~~IA~~AGvs~~ 42 (235)
T 2fbq_A 7 ETVERILDAAEQLFAEKGFAETSLRLITSKAGVNLA 42 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHH
T ss_pred hHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHH
Confidence 456666655 456787 6999999999998753
No 268
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=37.22 E-value=1.2e+02 Score=22.29 Aligned_cols=48 Identities=13% Similarity=0.067 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcC-CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 83 VRNRAMDAVDACN-RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 83 ~~~~im~Ave~lg-~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.+-.++..+...+ ..+|+.|+|...|++...+-+.|..|..+ |.++-.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~--Gli~r~ 80 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK--KLIYRY 80 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHC--CCEeec
Confidence 4567888998886 78999999999999999999999999887 555543
No 269
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=37.16 E-value=23 Score=29.06 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=24.6
Q ss_pred chHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
...+++|++| +.+.|+ .+|+.|||.++|++...
T Consensus 22 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t 59 (231)
T 2zcx_A 22 QQREEAILDAARELGTERGIREITLTDIAATVGMHKSA 59 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHH
Confidence 3456666655 556787 69999999999988643
No 270
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=36.91 E-value=19 Score=33.43 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCC------ceehhhhhhhcCCCHHHHHHHHHHHHh
Q 023574 85 NRAMDAVDACNR------RVTIGDVAGKAGLKLNEAQKALQALAA 123 (280)
Q Consensus 85 ~~im~Ave~lg~------RvTvGDVAa~aGL~L~~Ae~aL~aLAs 123 (280)
..|++.+.+... .+|+.|++..||+..+|+-.+|+.|-.
T Consensus 194 ~~i~~~L~~~~~~~~~~~~isi~~is~~T~i~~~Dii~tL~~l~~ 238 (280)
T 2ou2_A 194 QTILEILMGLKSESGERPQITINEISEITSIKKEDVISTLQYLNL 238 (280)
T ss_dssp HHHHHHC-----------CCBHHHHHHHHCBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcccccCCCCceeHHHHHHHhCCCHHHHHHHHHHCCc
Confidence 456666655554 799999999999999999999987643
No 271
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=36.78 E-value=27 Score=26.65 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHc----CCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcc
Q 023574 81 ADVRNRAMDAVDAC----NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (280)
Q Consensus 81 ~~~~~~im~Ave~l----g~Rv-TvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~~ 144 (280)
..+-..|.+.+... |.++ |..++|.+-|+|...++++|..|.++ |-|+... |-=.|+=+..
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~--Gli~~~~-~~G~~V~~~~ 77 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDD--NVIEKRR-GLGMLVKAGA 77 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET-TTEEEECTTH
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEec-CCeEEEeCCc
Confidence 34455666666653 4455 89999999999999999999999987 4465443 3334555443
No 272
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=36.74 E-value=61 Score=28.77 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=44.4
Q ss_pred CCchHHHHHHHHH-HHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc---CCceEeccCCcEEEEc
Q 023574 79 LPADVRNRAMDAV-DACNRRVTIGDVAGKAGLKLNEAQKALQALAADT---DGFLEVSDEGDVLYVF 141 (280)
Q Consensus 79 l~~~~~~~im~Av-e~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~---~GhLqVsesGEIlYvF 141 (280)
++|+--.+++.|+ =-.|.-+|+.++|...|++.++++++|..|+.++ +--+++-+.++- |.|
T Consensus 11 ~~~~~l~~~iEAlLf~a~epvs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~g-y~l 76 (219)
T 2z99_A 11 LDADELKRVLEALLLVIDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEG-WRM 76 (219)
T ss_dssp CCHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTE-EEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCCCEEEEEECCE-EEE
Confidence 3444334444443 3457779999999999999999999999999987 344666665543 554
No 273
>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid binding DNA repair protein, DNA-binding protein; 2.10A {Escherichia coli} SCOP: a.4.2.1 c.55.7.1
Probab=36.59 E-value=35 Score=29.25 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=50.9
Q ss_pred chHHHHHHHHHHHc--CCceehhhhhhhcCCC--HHHHHHHHHH--HHhhcCCceEeccCCcEEEEcCcchHHHHhhhhH
Q 023574 81 ADVRNRAMDAVDAC--NRRVTIGDVAGKAGLK--LNEAQKALQA--LAADTDGFLEVSDEGDVLYVFPNNYRAKLAAKSF 154 (280)
Q Consensus 81 ~~~~~~im~Ave~l--g~RvTvGDVAa~aGL~--L~~Ae~aL~a--LAsD~~GhLqVsesGEIlYvFP~~fRs~l~~Ks~ 154 (280)
.+.+.++.+++.+. |.-+|-||||...|.+ ...+-.+|.. ++-...||==|..+|.+- +|+.-+..|.+
T Consensus 95 t~Fq~~V~~~l~~IP~G~~~tYg~iA~~~g~p~a~RaVg~A~~~np~~~~iPcHRVv~~~G~l~-----gy~~g~~~k~~ 169 (180)
T 1sfe_A 95 TAFQQQVWQALRTIPCGETVSYQQLANAIGKPKAVRAVASACAANKLAIVIPCHRVVRGDGSLS-----GYRWGVSRKAQ 169 (180)
T ss_dssp CHHHHHHHHHHTTSCTTCCEEHHHHHHHTTCTTCHHHHHHHHHTCCBBTTBCGGGEECTTSCCT-----TCTTCHHHHHH
T ss_pred ChHHHHHHHHHhcCCCCCeEeHHHHHHHhCCCchHHHHHHHHHhCCCCcccCcceEECCCCCcC-----CCCCCHHHHHH
Confidence 56789999999997 5567889999999974 3444444432 334578999999999983 45443444555
Q ss_pred HHhHH
Q 023574 155 RLKVE 159 (280)
Q Consensus 155 r~rl~ 159 (280)
.+.+|
T Consensus 170 LL~~E 174 (180)
T 1sfe_A 170 LLRRE 174 (180)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55444
No 274
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=36.57 E-value=17 Score=29.81 Aligned_cols=32 Identities=13% Similarity=0.302 Sum_probs=23.4
Q ss_pred HHHHHHHH----HHHc-CC-ceehhhhhhhcCCCHHHH
Q 023574 83 VRNRAMDA----VDAC-NR-RVTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 83 ~~~~im~A----ve~l-g~-RvTvGDVAa~aGL~L~~A 114 (280)
.+++|++| +.+. |+ .+|+.|||.++|++....
T Consensus 6 tr~~Il~aA~~l~~~~~G~~~~s~~~IA~~aGvs~~tl 43 (220)
T 1z0x_A 6 SKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAI 43 (220)
T ss_dssp SHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHHHHHHHhcCCcccCCHHHHHHHcCCCHHHH
Confidence 35566554 4556 87 699999999999887543
No 275
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=36.51 E-value=19 Score=28.36 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=24.1
Q ss_pred hHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
+.+.+|++| +.+.||. +|+.|||..+|++.-.
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~t 48 (200)
T 2hyj_A 12 ATRGRILGRAAEIASEEGLDGITIGRLAEELEMSKSG 48 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred ccHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHH
Confidence 456667655 4567875 9999999999988654
No 276
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=36.36 E-value=22 Score=28.10 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCCc-eehhhhhhhcCCCHHH
Q 023574 84 RNRAMDAVDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 84 ~~~im~Ave~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
-...++.+.+.||. +|+.|||..+|++...
T Consensus 17 l~aA~~lF~~~Gy~~ts~~~IA~~aGvsk~t 47 (202)
T 2i10_A 17 LQTAMELFWRQGYEGTSITDLTKALGINPPS 47 (202)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHhCCChHH
Confidence 34445556778876 8899999999987643
No 277
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=35.63 E-value=74 Score=24.15 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
.+-.++..+... +.+|+.|+|...|++...+-+.|..|..+
T Consensus 42 ~q~~iL~~l~~~-~~~~~~eLa~~l~~~~~~vs~~l~~L~~~ 82 (149)
T 4hbl_A 42 SQYLVMLTLWEE-NPQTLNSIGRHLDLSSNTLTPMLKRLEQS 82 (149)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 456788888776 67999999999999999999999999876
No 278
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=35.63 E-value=1.3e+02 Score=22.02 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++..+.+. +.+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 30 ~~~~iL~~l~~~-~~~~~~ela~~l~~s~~tvs~~l~~L~~~--glv~~ 75 (138)
T 3bpv_A 30 AQVACLLRIHRE-PGIKQDELATFFHVDKGTIARTLRRLEES--GFIER 75 (138)
T ss_dssp HHHHHHHHHHHS-TTCBHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 456788888875 67999999999999999999999999887 44444
No 279
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=35.51 E-value=12 Score=28.69 Aligned_cols=31 Identities=10% Similarity=0.182 Sum_probs=23.1
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~ 112 (280)
+.+.+|++| +.+.|+ .+|+.|||.++|++..
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~ti~~IA~~agvs~~ 46 (204)
T 3eup_A 11 RTRQFIIESTAPVFNVKGLAGTSLTDLTEATNLTKG 46 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcH
Confidence 455666555 456677 5899999999998864
No 280
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=35.42 E-value=21 Score=28.87 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHc--CCceehhhhhhhcCCC--HHHHHHHHHH--HHhhcCCceEeccCCcEE
Q 023574 82 DVRNRAMDAVDAC--NRRVTIGDVAGKAGLK--LNEAQKALQA--LAADTDGFLEVSDEGDVL 138 (280)
Q Consensus 82 ~~~~~im~Ave~l--g~RvTvGDVAa~aGL~--L~~Ae~aL~a--LAsD~~GhLqVsesGEIl 138 (280)
+.+.++.++|.+. |.-+|-||||...|.+ ...+-.+|.. ++-...||==|..+|.|-
T Consensus 5 ~Fq~~Vw~~l~~IP~G~v~TYg~IA~~~G~p~aaRaVG~Al~~Np~~i~IPCHRVV~s~G~l~ 67 (116)
T 3gva_A 5 EFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTIS 67 (116)
T ss_dssp HHHHHHHHHHTTSCTTCBBCHHHHHHHTTCTTCHHHHHHHHHTSCTTCSSCGGGBCCTTSBCC
T ss_pred HHHHHHHHHHhcCCCCCeEeHHHHHHHhCCCCcHHHHHHHHHhCCCCcCCCceEEECCCCCCC
Confidence 4788999999998 6778889999999964 4455455533 234478999999999985
No 281
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=35.39 E-value=98 Score=26.30 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=33.7
Q ss_pred HcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 023574 93 ACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (280)
Q Consensus 93 ~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVse 133 (280)
+-|.+++..|+|.+-|+|...++++|..|.++ |-+++..
T Consensus 45 ~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~--Glv~~~~ 83 (237)
T 3c7j_A 45 PSGTALRQQELATLFGVSRMPVREALRQLEAQ--SLLRVET 83 (237)
T ss_dssp CTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEET
T ss_pred CCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEeC
Confidence 36789999999999999999999999999866 6676664
No 282
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=35.38 E-value=1.5e+02 Score=22.73 Aligned_cols=46 Identities=26% Similarity=0.328 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++..+...+ .+|++|+|...|++...+-+.|..|..+ |-++-
T Consensus 47 ~q~~iL~~l~~~~-~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r 92 (162)
T 3k0l_A 47 PQFTALSVLAAKP-NLSNAKLAERSFIKPQSANKILQDLLAN--GWIEK 92 (162)
T ss_dssp HHHHHHHHHHHCT-TCCHHHHHHHHTSCGGGHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHC--cCeEe
Confidence 4567888888876 6999999999999999999999999876 45543
No 283
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=35.35 E-value=70 Score=24.69 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeccCCc
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSDEGD 136 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aG----L~L~~Ae~aL~aLAsD~~GhLqVsesGE 136 (280)
..+-.||.++-+.++.+|+.||+...+ ++...+-..|..|..+ |.++...+|.
T Consensus 9 ~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k--Glv~r~~~~r 65 (138)
T 2g9w_A 9 DLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKK--NLVLQIRDDR 65 (138)
T ss_dssp HHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHT--TSEEEEC---
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHC--CCEEEEecCC
Confidence 356789999998766899999999987 7899998888888775 5666666555
No 284
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=35.35 E-value=26 Score=27.55 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=23.9
Q ss_pred hHHHHHHHHH----HHcCCceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDAV----DACNRRVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~Av----e~lg~RvTvGDVAa~aGL~L~~ 113 (280)
+.+.+|++|. .+.|..+|+.|||..+|++...
T Consensus 20 ~~r~~Il~aA~~lf~~~G~~~s~~~IA~~aGvs~~t 55 (215)
T 2hku_A 20 QTRDALFTAATELFLEHGEGVPITQICAAAGAHPNQ 55 (215)
T ss_dssp CHHHHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHH
Confidence 4566666554 4456899999999999988654
No 285
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=35.33 E-value=12 Score=28.92 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=24.4
Q ss_pred hHHHHHHHHH----HHcCCc-eehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDAV----DACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~Av----e~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
+.|++|++|. .+.|+. +|+.|||.++|++...
T Consensus 18 ~~R~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t 54 (212)
T 3loc_A 18 AKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTN 54 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHH
Confidence 4567777665 467864 9999999999988654
No 286
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=35.26 E-value=28 Score=27.16 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=30.1
Q ss_pred cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 94 CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 94 lg~Rv-TvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
-|-+. |..++|.+-|+|...+++||..|.++ |-++.
T Consensus 34 pG~~LPser~La~~~gVSr~tVReAl~~L~~e--Glv~~ 70 (134)
T 4ham_A 34 EGEKILSIREFASRIGVNPNTVSKAYQELERQ--EVIIT 70 (134)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred CCCCCccHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEE
Confidence 46677 88899999999999999999999886 44443
No 287
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=35.25 E-value=27 Score=30.00 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=37.9
Q ss_pred CCCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 78 KLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 78 ~l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
-|...++-.|.+++.+ +..|+.|+|.++|++..-.++=|+.|++ -|-|+.
T Consensus 22 ~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~~~~~l~r~L~~L~~--~g~l~~ 71 (335)
T 2r3s_A 22 AIKAAVELNVFTAISQ--GIESSQSLAQKCQTSERGMRMLCDYLVI--IGFMTK 71 (335)
T ss_dssp HHHHHHHTTHHHHHTT--SEECHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred HHHHHHHcChHHHHhc--CCCCHHHHHHHhCCCchHHHHHHHHHHh--cCCeEe
Confidence 3444555666777764 6799999999999998888888888876 456654
No 288
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=35.24 E-value=1.6e+02 Score=23.01 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=41.2
Q ss_pred HHHHHHHHHHc----CCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcchH
Q 023574 84 RNRAMDAVDAC----NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYR 146 (280)
Q Consensus 84 ~~~im~Ave~l----g~Rv-TvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~~fR 146 (280)
-..|.+.+... |.++ |..++|.+-|+|...++++|..|.++ |-++... |-=.||=+.+..
T Consensus 10 ~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~--Gli~~~~-g~G~~V~~~~~~ 74 (129)
T 2ek5_A 10 ASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEA--GILYKKR-GIGMFVSAQAPA 74 (129)
T ss_dssp HHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTT--TSEEEET-TTEEEECTTHHH
T ss_pred HHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CcEEEec-CCEEEEecCchH
Confidence 34444445443 4455 89999999999999999999999877 5565543 334566554433
No 289
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=35.10 E-value=1.5e+02 Score=22.56 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++..+.+.+ .+|+.|+|...|++...+-+.|..|..+ |.++.
T Consensus 53 ~~~~iL~~l~~~~-~~t~~ela~~l~is~~tvs~~l~~Le~~--Gli~r 98 (162)
T 3cjn_A 53 AKMRALAILSAKD-GLPIGTLGIFAVVEQSTLSRALDGLQAD--GLVRR 98 (162)
T ss_dssp HHHHHHHHHHHSC-SEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHCC-CCCHHHHHHHHCCChhHHHHHHHHHHHC--CCEEe
Confidence 4567888888765 6999999999999999999999999887 44544
No 290
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=34.97 E-value=35 Score=25.18 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=31.2
Q ss_pred HHHHHHHHHcC---------CceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 85 NRAMDAVDACN---------RRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 85 ~~im~Ave~lg---------~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
|++.+.+.+.| +..|+.|+|..-|+++++.-++|.++.+.
T Consensus 17 P~~~~vf~~~G~~C~gC~~a~~~tLeeA~~~hgiD~d~ll~eLn~~i~~ 65 (76)
T 2k53_A 17 RGTAPIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKELNEYFEK 65 (76)
T ss_dssp GGGHHHHHHTTCCCCSSCCCCCSBHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCccccccHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 34455555544 67899999999999999999999887643
No 291
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=34.89 E-value=30 Score=28.09 Aligned_cols=28 Identities=21% Similarity=0.346 Sum_probs=22.2
Q ss_pred HHHHHHHHcCC-ceehhhhhhhcCCCHHH
Q 023574 86 RAMDAVDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 86 ~im~Ave~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
..++.+.+.|+ .+|+.|||.++|++...
T Consensus 15 aA~~l~~~~G~~~~tv~~Ia~~agvs~~t 43 (213)
T 3ni7_A 15 TAVELAAHTSWEAVRLYDIAARLAVSLDE 43 (213)
T ss_dssp HHHHHHHHSCSTTCCHHHHHHHTTSCHHH
T ss_pred HHHHHHHHcCccccCHHHHHHHhCCCHHH
Confidence 33455778896 69999999999998765
No 292
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=34.85 E-value=8.2 Score=33.32 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=0.0
Q ss_pred CceehhhhhhhcCCCHHHHHHHHH
Q 023574 96 RRVTIGDVAGKAGLKLNEAQKALQ 119 (280)
Q Consensus 96 ~RvTvGDVAa~aGL~L~~Ae~aL~ 119 (280)
.++|+.|||..+|+|...+-++|.
T Consensus 3 ~~~ti~diA~~agVS~~TVSr~Ln 26 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLN 26 (339)
T ss_dssp ------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Confidence 479999999999999999988884
No 293
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=34.82 E-value=19 Score=24.34 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=23.3
Q ss_pred CchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023574 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~A 114 (280)
.+.+-.+|-++.++.| .|..|+|...|++....
T Consensus 8 ~~~~~~~l~~~r~~~g--lsq~~lA~~~gis~~~i 40 (77)
T 2b5a_A 8 KRKFGRTLKKIRTQKG--VSQEELADLAGLHRTYI 40 (77)
T ss_dssp HHHHHHHHHHHHHHTT--CCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHcC--CCHHHHHHHHCCCHHHH
Confidence 3445555655555554 79999999999987665
No 294
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=34.72 E-value=8.2 Score=33.20 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=0.0
Q ss_pred CceehhhhhhhcCCCHHHHHHHHHH
Q 023574 96 RRVTIGDVAGKAGLKLNEAQKALQA 120 (280)
Q Consensus 96 ~RvTvGDVAa~aGL~L~~Ae~aL~a 120 (280)
.++|+.|||..+|+|...+-++|..
T Consensus 4 ~~~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -------------------------
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHcC
Confidence 4789999999999999999988864
No 295
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=34.63 E-value=9.3 Score=30.12 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHcCCc-eehhhhhhhcCCCHH
Q 023574 83 VRNRAMDAVDACNRR-VTIGDVAGKAGLKLN 112 (280)
Q Consensus 83 ~~~~im~Ave~lg~R-vTvGDVAa~aGL~L~ 112 (280)
+-...++.+.+.|+. +|+.|||.++|++..
T Consensus 35 Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~ 65 (212)
T 2np3_A 35 ILTAARVCFAERGFDATSLRRIAETAGVDQS 65 (212)
T ss_dssp CHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHcCCCHH
Confidence 344445556667886 999999999998754
No 296
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=34.56 E-value=1.4e+02 Score=22.08 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++..+.+.+ .+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 30 ~~~~iL~~l~~~~-~~t~~~la~~l~~s~~~vs~~l~~Le~~--gli~r 75 (144)
T 1lj9_A 30 GQYLYLVRVCENP-GIIQEKIAELIKVDRTTAARAIKRLEEQ--GFIYR 75 (144)
T ss_dssp THHHHHHHHHHST-TEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHCc-CcCHHHHHHHHCCCHhHHHHHHHHHHHC--CCEEe
Confidence 3456888888765 7999999999999999999999999887 44444
No 297
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=34.43 E-value=48 Score=24.55 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHH
Q 023574 83 VRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQA 120 (280)
Q Consensus 83 ~~~~im~Ave~l-g~RvTvGDVAa~aGL~L~~Ae~aL~a 120 (280)
.-.++++.+++. ....|+.|+|...|++...-++.+..
T Consensus 8 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 8 KLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 335677777776 56699999999999998777665543
No 298
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=34.38 E-value=16 Score=26.23 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=18.8
Q ss_pred ceehhhhhhhcCCCHHHHHHHH
Q 023574 97 RVTIGDVAGKAGLKLNEAQKAL 118 (280)
Q Consensus 97 RvTvGDVAa~aGL~L~~Ae~aL 118 (280)
.+|+.|||..+|++...+-+.|
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~l 30 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRAL 30 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
Confidence 5899999999999998886544
No 299
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=34.14 E-value=1.1e+02 Score=23.25 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aG----L~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP 142 (280)
.+..||+++-+.| .+|+.||+...+ ++...+-.-|..|..+ |-++...+|..-..+|
T Consensus 36 ~e~~VL~~L~~~~-~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~K--GlV~R~~~gR~~~Y~p 96 (99)
T 2k4b_A 36 AELIVMRVIWSLG-EARVDEIYAQIPQELEWSLATVKTLLGRLVKK--EMLSTEKEGRKFVYRP 96 (99)
T ss_dssp SCSHHHHHHHHHS-CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHT--TSCEEEEETTEEEEEC
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHC--CCEEEEeCCCEEEEEE
Confidence 4568999999865 799999999886 5678888888888765 5666666676444333
No 300
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.06 E-value=77 Score=24.59 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHcCC-ceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 82 DVRNRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 82 ~~~~~im~Ave~lg~-RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
+....|++.++..|. .++..|+..+++|+-.++.+.|..|-+.
T Consensus 37 ~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k 80 (95)
T 2yu3_A 37 NQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESK 80 (95)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 466678999988665 6999999999999999999999999553
No 301
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=34.05 E-value=24 Score=28.38 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=23.6
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLN 112 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~ 112 (280)
..|.+|++| +.+.|+ .+|+.|||..+|++..
T Consensus 14 ~~R~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~~ 49 (208)
T 3v6g_A 14 GRRQAIVEAAERVIARQGLGGLSHRRVAAEANVPVG 49 (208)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCch
Confidence 346667665 566787 5899999999998864
No 302
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=33.57 E-value=52 Score=25.51 Aligned_cols=58 Identities=14% Similarity=0.252 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHc----CCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 023574 82 DVRNRAMDAVDAC----NRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (280)
Q Consensus 82 ~~~~~im~Ave~l----g~Rv-TvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP 142 (280)
.+-..|.+.+... |.++ |..++|.+-|++...+++||..|.++ |-|+... |-=.||=+
T Consensus 17 ~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~--G~i~~~~-g~G~~V~~ 79 (125)
T 3neu_A 17 QISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERA--GYIYAKR-GMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET-TTEEEECC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC--CeEEEec-CCEEEEec
Confidence 3445555555543 4455 69999999999999999999999986 4555443 33345544
No 303
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=33.54 E-value=1.3e+02 Score=21.43 Aligned_cols=46 Identities=11% Similarity=0.110 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCceehhhh----hhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 84 RNRAMDAVDACNRRVTIGDV----AGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 84 ~~~im~Ave~lg~RvTvGDV----Aa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
+-.++.++.+. +..|+.|+ |...|++...+-+.|..|..+ |-++-.
T Consensus 10 q~~iL~~l~~~-~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~--gli~r~ 59 (99)
T 1tbx_A 10 EAIVLAYLYDN-EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQE--GFVKER 59 (99)
T ss_dssp HHHHHHHHTTC-TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCEEEE
Confidence 45778888764 56999999 899999999999999999887 455443
No 304
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=33.53 E-value=34 Score=26.69 Aligned_cols=47 Identities=6% Similarity=0.118 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~l-g~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++..+... ++.+|+.|+|...|++...+-+.|..|..+ |.++-
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r 94 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDR--GLVLR 94 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC--CCEee
Confidence 456788999888 489999999999999999999999999876 55554
No 305
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=33.44 E-value=8.9 Score=34.12 Aligned_cols=43 Identities=14% Similarity=0.388 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHcC--Cceehhhhhhhc-CCCHHHHHHHHHHHHhh
Q 023574 82 DVRNRAMDAVDACN--RRVTIGDVAGKA-GLKLNEAQKALQALAAD 124 (280)
Q Consensus 82 ~~~~~im~Ave~lg--~RvTvGDVAa~a-GL~L~~Ae~aL~aLAsD 124 (280)
..+.+|++.++... ..+.+-||+.+. +++.++++++|..|.++
T Consensus 207 ~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~e 252 (270)
T 2pi2_A 207 VAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNE 252 (270)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhC
Confidence 45778999998875 788899999988 79999999999999877
No 306
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=33.42 E-value=8.9 Score=33.50 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=0.0
Q ss_pred CCceehhhhhhhcCCCHHHHHHHHHH
Q 023574 95 NRRVTIGDVAGKAGLKLNEAQKALQA 120 (280)
Q Consensus 95 g~RvTvGDVAa~aGL~L~~Ae~aL~a 120 (280)
..++|+.|||..+|+|...+-++|..
T Consensus 6 ~~~~ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 6 KFRPTLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp --------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 34689999999999999999998854
No 307
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=33.31 E-value=37 Score=30.59 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=39.5
Q ss_pred cccCCCCchHHHHHHHHHHHcC-CceehhhhhhhcCC--CHH---HHHHHHHHHHhhcCCceEec
Q 023574 74 VESDKLPADVRNRAMDAVDACN-RRVTIGDVAGKAGL--KLN---EAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 74 v~~~~l~~~~~~~im~Ave~lg-~RvTvGDVAa~aGL--~L~---~Ae~aL~aLAsD~~GhLqVs 132 (280)
+.+--|-..++-.|-+++.+.| +..|+.|+|+++|+ +.. -.++=|++|++ .|-|+.+
T Consensus 32 ~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~--~g~l~~~ 94 (364)
T 3p9c_A 32 VLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLAS--YNVVTCL 94 (364)
T ss_dssp HHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHh--CCCEEEe
Confidence 3334445566677888898875 67999999999997 544 45566677776 4555544
No 308
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=33.30 E-value=32 Score=31.99 Aligned_cols=37 Identities=11% Similarity=0.283 Sum_probs=28.2
Q ss_pred HHHHHHHHH-cCCceehhhhhhhcCCCHHHHHHHHHHH
Q 023574 85 NRAMDAVDA-CNRRVTIGDVAGKAGLKLNEAQKALQAL 121 (280)
Q Consensus 85 ~~im~Ave~-lg~RvTvGDVAa~aGL~L~~Ae~aL~aL 121 (280)
..|++.+.+ .+..+|+.|++..||+..+|.-.+|+.|
T Consensus 201 ~~il~~L~~~~~~~isi~~is~~T~i~~~DIi~tL~~l 238 (284)
T 2ozu_A 201 SVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHL 238 (284)
T ss_dssp HHHHHHHHHC-----CHHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcEeHHHHHHHhCCCHHHHHHHHHHC
Confidence 567777765 4678999999999999999999999887
No 309
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=32.86 E-value=41 Score=24.35 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=33.1
Q ss_pred CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEE
Q 023574 96 RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (280)
Q Consensus 96 ~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYv 140 (280)
+.+|+.|+|...|++...+-+.|..|..+ |.++..+++...++
T Consensus 29 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~--Glv~~~~d~R~~~v 71 (95)
T 2qvo_A 29 NDVYIQYIASKVNSPHSYVWLIIKKFEEA--KMVECELEGRTKII 71 (95)
T ss_dssp CCEEHHHHHHHSSSCHHHHHHHHHHHHHT--TSEEEEEETTEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC--cCccCCCCCCeEEE
Confidence 45999999999999999999999998764 55655555654433
No 310
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=32.69 E-value=16 Score=29.81 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=24.5
Q ss_pred hHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHHH
Q 023574 82 DVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 82 ~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~A 114 (280)
+.+.+|++| +.+.|+ .+|+.|||.++|++....
T Consensus 18 ~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tl 55 (251)
T 3npi_A 18 VSTDTVLDIALSLFSELGFSDAKLEAIAKKSGMSKRMI 55 (251)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCHHHH
Confidence 345566555 556687 799999999999987653
No 311
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=32.69 E-value=32 Score=27.78 Aligned_cols=35 Identities=14% Similarity=0.295 Sum_probs=25.8
Q ss_pred CCchHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 79 LPADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 79 l~~~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
-..+.+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 13 ~~~~~r~~il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t 52 (216)
T 2oi8_A 13 YRTQVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPA 52 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHH
Confidence 344566777655 5566875 9999999999988654
No 312
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=32.63 E-value=61 Score=25.39 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~ 125 (280)
.+-.++..+.+.+...|+.|+|...|++...+-+.+..|..+.
T Consensus 32 ~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~G 74 (151)
T 4aik_A 32 THWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKG 74 (151)
T ss_dssp HHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCC
Confidence 3456888999999999999999999999999999999998763
No 313
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=32.60 E-value=55 Score=24.16 Aligned_cols=56 Identities=9% Similarity=0.144 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcC----CCHHHHHHHHHHHHhhcCCceEecc-CCcEEEEc
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSD-EGDVLYVF 141 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aG----L~L~~Ae~aL~aLAsD~~GhLqVse-sGEIlYvF 141 (280)
.+-.++..+.+ ++.+|+.|+|...| ++...+-..|..|..+ |-++... +...+|+.
T Consensus 11 ~~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~--Glv~r~~~~rr~~~~~ 71 (123)
T 1okr_A 11 AEWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKK--GFIDRKKDNKIFQYYS 71 (123)
T ss_dssp HHHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--TSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHC--CCeEEEecCCeEEEEE
Confidence 45678899987 45699999999998 7899998999988877 4444333 34455544
No 314
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.22 E-value=30 Score=28.13 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=22.8
Q ss_pred HHHHHHH----HHHHcCCceehhhhhhhcCCCHHH
Q 023574 83 VRNRAMD----AVDACNRRVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 83 ~~~~im~----Ave~lg~RvTvGDVAa~aGL~L~~ 113 (280)
.+++|++ .+.+.| .+|+.|||.++|++...
T Consensus 12 ~r~~Il~aA~~l~~~~G-~~s~~~IA~~aGvs~~t 45 (213)
T 2g7g_A 12 DRERIAEAALELVDRDG-DFRMPDLARHLNVQVSS 45 (213)
T ss_dssp CHHHHHHHHHHHHHHHS-SCCHHHHHHHTTSCHHH
T ss_pred CHHHHHHHHHHHHHHcC-CCCHHHHHHHhCCCHhH
Confidence 3455554 456669 99999999999998753
No 315
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=32.05 E-value=40 Score=29.75 Aligned_cols=65 Identities=11% Similarity=0.170 Sum_probs=45.4
Q ss_pred cccccCCCCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 023574 72 RIVESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (280)
Q Consensus 72 ~~v~~~~l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~ 143 (280)
|.+.+--|-..++-.|.+++.+ +..|+.|+|.++|++..-.++=|+.|++ -|-|+.++ + .|.-..
T Consensus 41 ~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~~~~~l~rlLr~L~~--~gll~~~~--~-~y~~t~ 105 (359)
T 1x19_A 41 GLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPPRLEMLLETLRQ--MRVINLED--G-KWSLTE 105 (359)
T ss_dssp HHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEET--T-EEEECH
T ss_pred HHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCcChHHHHHHHHHHHh--CCCeEeeC--C-eEecCH
Confidence 3344444555566667777764 5699999999999998888888888876 45666543 2 566543
No 316
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=31.97 E-value=1.9e+02 Score=24.45 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=42.7
Q ss_pred CCCCchHHHHHHHHHHH----cCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC-CcEE
Q 023574 77 DKLPADVRNRAMDAVDA----CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE-GDVL 138 (280)
Q Consensus 77 ~~l~~~~~~~im~Ave~----lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVses-GEIl 138 (280)
.++...+-..|.+.+.. -|.+++..++|.+-|+|-.-+++||..|.++ |-+++... |-.|
T Consensus 27 ~~~~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~e--Glv~~~~~~G~~V 91 (239)
T 2hs5_A 27 TSRTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIED--RLVAHELNRGVFV 91 (239)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEETTTEEEE
T ss_pred CcHHHHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEeCCCeeEE
Confidence 33444444555555544 4778999999999999999999999999876 55665543 5333
No 317
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=31.43 E-value=1.2e+02 Score=23.85 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHc-----------CCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 82 DVRNRAMDAVDAC-----------NRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 82 ~~~~~im~Ave~l-----------g~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
+...|+...+.++ ...+|..|+|...|++...+-+.|..|..+
T Consensus 152 ~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 152 NATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp HHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 4456776666442 345788999999999999999999999887
No 318
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.37 E-value=46 Score=30.75 Aligned_cols=75 Identities=11% Similarity=0.161 Sum_probs=30.1
Q ss_pred CCceehhhhhhhcCCCHHHHHHHHHHHHhhc--CCceE-eccCCcEEEEcCcchHHHHhhhhHHHhHHHHHHHhhhhhh
Q 023574 95 NRRVTIGDVAGKAGLKLNEAQKALQALAADT--DGFLE-VSDEGDVLYVFPNNYRAKLAAKSFRLKVEPVIDKAKAAAE 170 (280)
Q Consensus 95 g~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~--~GhLq-VsesGEIlYvFP~~fRs~l~~Ks~r~rl~~~~~k~w~v~~ 170 (280)
...+|..++|...|++.+++|.-|...-++. .|.+. |+..=+|-++=||.++.- +=+..+.+|+.|-.++..++.
T Consensus 305 ~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~-q~~~l~~~L~~W~~~v~~l~~ 382 (393)
T 4b4t_O 305 IRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGD-QITKMKDRLVEWNDQVEKLGK 382 (393)
T ss_dssp CCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC---------------------------------
T ss_pred CCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999999998886555553 66663 222222234456666541 114455678888777766553
No 319
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=31.07 E-value=79 Score=29.41 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=43.5
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC-CcEEEEcCcch
Q 023574 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE-GDVLYVFPNNY 145 (280)
Q Consensus 85 ~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVses-GEIlYvFP~~f 145 (280)
.++++.+-+ ++.+|+.+++...|++-..|++.|..|... |-|+-... -.-+|++|+-+
T Consensus 300 ~~ll~~l~~-~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~--GiL~~~~~gR~~~y~~~~~l 358 (373)
T 3eqx_A 300 HELVQVIFE-QPYCRIQNLVESGLAKRQTASVYLKQLCDI--GVLEEVQSGKEKLFVHPKFV 358 (373)
T ss_dssp HHHHHHHHH-CSEEEHHHHHHTSSSCHHHHHHHHHHHHHT--TSCEEC--CCSCEEECHHHH
T ss_pred HHHHHHHHH-CCCccHHHHHHHhCcCHHHHHHHHHHHHHC--CcEEEeCCCCceEeehHHHH
Confidence 456666655 457999999999999999999999999864 55654433 45789997654
No 320
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=31.04 E-value=1.3e+02 Score=25.77 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=36.5
Q ss_pred CCCCchHHHHHHHHHHHcCCceehhhhhhhcC-----------CC---HHHHHHHHHHHHhhcCCceEec
Q 023574 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGKAG-----------LK---LNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 77 ~~l~~~~~~~im~Ave~lg~RvTvGDVAa~aG-----------L~---L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.++..+.+++|+++++++||+....--+.+++ +. -.+.-+++..-|.+.|-+|.+.
T Consensus 25 ~~vs~~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 94 (340)
T 1qpz_A 25 RFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILG 94 (340)
T ss_dssp SCCCHHHHHHHHHHHHHHTCCCCHHHHHHHHTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCHHHHhhccCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEE
Confidence 46889999999999999999865422111221 11 2345566777777777776653
No 321
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=31.00 E-value=19 Score=28.94 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=23.3
Q ss_pred hHHHHHHH----HHHHcCC-ceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~----Ave~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
..+++|++ .+.+.|+ .+|+.|||..+|++...
T Consensus 30 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t 66 (226)
T 2pz9_A 30 STRQRIVAAAKEEFARHGIAGARVDRIAKQARTSKER 66 (226)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCcHHHHHHHHCCChHH
Confidence 34455555 4556687 49999999999988654
No 322
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=30.74 E-value=15 Score=29.20 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=23.6
Q ss_pred hHHHHHHH----HHHHcCC-ceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMD----AVDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~----Ave~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
+.+.+|++ .+.+.|+ .+|+.|||.++|++.-.
T Consensus 3 ~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~AGvskgt 39 (208)
T 2g3b_A 3 ERRDAILKASATAIAQRGIRGLRVNDVAEVAGVSPGL 39 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHH
Confidence 34556655 4566787 59999999999987643
No 323
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=30.67 E-value=61 Score=23.68 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=26.8
Q ss_pred HHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHH
Q 023574 85 NRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQA 120 (280)
Q Consensus 85 ~~im~Ave~l-g~RvTvGDVAa~aGL~L~~Ae~aL~a 120 (280)
.++++.+++. ....|+.|+|...|++...-++.+..
T Consensus 5 ~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 5 RQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4566666654 56799999999999998777665543
No 324
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=30.55 E-value=28 Score=30.51 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=42.2
Q ss_pred cccCCCCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCC
Q 023574 74 VESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEG 135 (280)
Q Consensus 74 v~~~~l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesG 135 (280)
+.+.-|....+-.|.+.+. ++..|+.|+|.+.|++.....+=|..|++ -|-|+..++|
T Consensus 31 ~~~~~l~~~~~l~i~~~l~--~~~~t~~ela~~~~~~~~~l~r~L~~L~~--~g~~~~~~~g 88 (360)
T 1tw3_A 31 HTPMVVRTAATLRLVDHIL--AGARTVKALAARTDTRPEALLRLIRHLVA--IGLLEEDAPG 88 (360)
T ss_dssp HHHHHHHHHHHTTHHHHHH--TTCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEETT
T ss_pred HHHHHHHHHHHhCHHHHHh--CCCCCHHHHHHHhCcCHHHHHHHHHHHHH--CCCEEecCCC
Confidence 3344455566777788884 35689999999999999999888888876 4555554444
No 325
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=30.42 E-value=56 Score=28.64 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEE
Q 023574 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVL 138 (280)
Q Consensus 81 ~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIl 138 (280)
++.+..|+-++ ..+..|+.++|...|++..++...|..|+... -++-..+|-|.
T Consensus 164 ~~~~~~l~~~l--~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~--~v~~~~~~~~~ 217 (232)
T 2qlz_A 164 MTQLAILHYLL--LNGRATVEELSDRLNLKEREVREKISEMARFV--PVKIINDNTVV 217 (232)
T ss_dssp TTHHHHHHHHH--HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTS--CEEEETTTEEE
T ss_pred ccHHHHHHHHH--hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcC--CeEEecCCeEE
Confidence 44555555554 45889999999999999999999999998763 33344445443
No 326
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=30.38 E-value=34 Score=26.48 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=22.9
Q ss_pred HHHHHHH----HHHHcCCc-eehhhhhhhcCCCHHH
Q 023574 83 VRNRAMD----AVDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 83 ~~~~im~----Ave~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
.+.+|++ .+.+.|+. +|+.|||.++|++...
T Consensus 9 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t 44 (199)
T 2o7t_A 9 RREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVAT 44 (199)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHH
Confidence 4455544 45667875 6999999999998754
No 327
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=30.12 E-value=11 Score=32.71 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=0.0
Q ss_pred CCceehhhhhhhcCCCHHHHHHHHH
Q 023574 95 NRRVTIGDVAGKAGLKLNEAQKALQ 119 (280)
Q Consensus 95 g~RvTvGDVAa~aGL~L~~Ae~aL~ 119 (280)
..++|+.|||..+|+|...+-++|.
T Consensus 4 ~~~~ti~diA~~agVS~~TVSr~Ln 28 (333)
T 3jvd_A 4 SAKSSLKEVAELAGVGYATASRALS 28 (333)
T ss_dssp -------------------------
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3579999999999999999988885
No 328
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=30.04 E-value=29 Score=28.35 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=23.1
Q ss_pred HHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 83 VRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 83 ~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
.+.+|++| +.+.|+. +|+.|||.++|++...
T Consensus 26 tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~t 61 (211)
T 3fiw_A 26 NRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPS 61 (211)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHH
T ss_pred CHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhH
Confidence 34555554 5556987 9999999999988654
No 329
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=29.96 E-value=44 Score=28.91 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=37.7
Q ss_pred CCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 023574 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (280)
Q Consensus 79 l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVse 133 (280)
|...++-.|.+++.+ +..|+.|+|.++|++..-.++=|+.|++. |-|+..+
T Consensus 25 l~~~~~lgi~~~l~~--~~~t~~ela~~~~~~~~~l~r~Lr~L~~~--g~l~~~~ 75 (334)
T 2ip2_A 25 VYVATRLGLADLIES--GIDSDETLAAAVGSDAERIHRLMRLLVAF--EIFQGDT 75 (334)
T ss_dssp HHHHHHTTHHHHHHT--TCCSHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET
T ss_pred HHHHHHcCcHHHHhC--CCCCHHHHHHHhCcCHHHHHHHHHHHHhC--CceEecC
Confidence 334455666777754 56999999999999999998888888863 4555443
No 330
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=29.88 E-value=15 Score=27.16 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=23.8
Q ss_pred cCCceehhhhhhhcCCCHHHHHHHHHHH
Q 023574 94 CNRRVTIGDVAGKAGLKLNEAQKALQAL 121 (280)
Q Consensus 94 lg~RvTvGDVAa~aGL~L~~Ae~aL~aL 121 (280)
+|+..|+.+.|...|+++++..++|.++
T Consensus 46 ~g~~~TL~~aa~~~gid~d~l~~~L~~~ 73 (81)
T 2fi0_A 46 VGRKVSLKQGSKLAGTPMDKIVRTLEAN 73 (81)
T ss_dssp HHHHCBHHHHHHHHTCCHHHHHHHHHHT
T ss_pred hcccCcHHHHHHHcCCCHHHHHHHHHHc
Confidence 3467999999999999999998888764
No 331
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=29.84 E-value=56 Score=26.38 Aligned_cols=47 Identities=15% Similarity=0.307 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~l-g~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++.++... ++.+|+.|+|...|++...+-+.|..|..+ |-++-
T Consensus 42 ~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~--GlV~r 89 (189)
T 3nqo_A 42 RQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKN--GYVDV 89 (189)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 456678888875 578999999999999999999999999876 55554
No 332
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=29.82 E-value=1.3e+02 Score=25.37 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=42.7
Q ss_pred CCCchHHHHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEE
Q 023574 78 KLPADVRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVL 138 (280)
Q Consensus 78 ~l~~~~~~~im~Ave~l-g~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIl 138 (280)
.|+..-+..+..+++.. |..+++.++|...|++.....+-|..+.-+ .|-++.+..|.++
T Consensus 244 ~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~-~~li~~~~~g~~~ 304 (324)
T 1hqc_A 244 GLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIR-QGLLKRTPRGRVP 304 (324)
T ss_dssp CCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHH-TTSEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHH-hcchhcCCcccee
Confidence 34444445556666665 456889999999999999998888875544 4677777777553
No 333
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=29.75 E-value=83 Score=23.69 Aligned_cols=43 Identities=12% Similarity=0.187 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023574 83 VRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (280)
Q Consensus 83 ~~~~im~Ave~l-g~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~ 125 (280)
.+-.++..+.+. ++.+|+.|+|...|++...+-+.|..|..+.
T Consensus 38 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G 81 (127)
T 2frh_A 38 EEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQED 81 (127)
T ss_dssp HHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 345678888775 3679999999999999999999999998773
No 334
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=29.57 E-value=51 Score=22.51 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023574 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 81 ~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~A 114 (280)
|++-.++-++.++.| .|..|+|.+.|++....
T Consensus 1 m~~~~~lk~~r~~~g--lsq~~lA~~~gis~~~i 32 (77)
T 2k9q_A 1 MELSNELKVERIRLS--LTAKSVAEEMGISRQQL 32 (77)
T ss_dssp CCHHHHHHHHHHHHT--CCHHHHHHHHTSCHHHH
T ss_pred CcHHHHHHHHHHHcC--CCHHHHHHHhCCCHHHH
Confidence 345566666666654 68999999999987665
No 335
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=29.53 E-value=11 Score=37.24 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVses 134 (280)
..++.|++.+++.| .+|-.||+..+|++..+|.+.|..|..+ |.|+-.-.
T Consensus 516 ~~~~~I~~~l~~~g-~it~~di~~l~~ls~~qa~~~L~~Lv~~--G~l~~~G~ 565 (583)
T 3lmm_A 516 ELTNAAMLWLSEVG-DLATSDLMAMCGVSRGTAKACVDGLVDE--ERVVAVGG 565 (583)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHcC-CcCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEEeCC
Confidence 34567888888865 5999999999999999999999999876 55554433
No 336
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=29.36 E-value=62 Score=29.27 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 84 ~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
+.+|++.+.+. +.+|..|+|.++||+...+.+-+..|-++
T Consensus 18 ~~~il~~l~~~-~~~sr~~la~~~~ls~~tv~~~v~~L~~~ 57 (406)
T 1z6r_A 18 AGAVYRLIDQL-GPVSRIDLSRLAQLAPASITKIVHEMLEA 57 (406)
T ss_dssp HHHHHHHHHSS-CSCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 35678888765 57999999999999999999888887664
No 337
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=29.24 E-value=98 Score=26.29 Aligned_cols=56 Identities=9% Similarity=0.113 Sum_probs=36.4
Q ss_pred CCCCchHHHHHHHHHHHcCCceehhhhhhhcC--------------CCHHHHHHHHHHHHhhcCCceEec
Q 023574 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGKAG--------------LKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 77 ~~l~~~~~~~im~Ave~lg~RvTvGDVAa~aG--------------L~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.++..+.++||+++++++||+....--+.+++ ---.+.-+++..-|.+.|-+|.+.
T Consensus 27 ~~vs~~tr~rV~~aa~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 96 (332)
T 2hsg_A 27 PNVKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILS 96 (332)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCcCHHHHHHHhCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEE
Confidence 46889999999999999999764321111111 112355567777777777666554
No 338
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=29.17 E-value=1.8e+02 Score=21.61 Aligned_cols=48 Identities=6% Similarity=0.093 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
..+-.++..+... +.+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 37 ~~~~~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~~--Glv~r~ 84 (143)
T 3oop_A 37 PEQWSVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLRK--ELIVRE 84 (143)
T ss_dssp HHHHHHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHHC--CCeecc
Confidence 3456778888776 67999999999999999999999999876 555543
No 339
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=29.06 E-value=33 Score=26.93 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=25.3
Q ss_pred CchHHHHHHHHH----HHcCC-ceehhhhhhhcCCCHHH
Q 023574 80 PADVRNRAMDAV----DACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 80 ~~~~~~~im~Av----e~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
+...+.+|++|. .+.|+ .+|+.|||.++|++...
T Consensus 12 ~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t 50 (199)
T 3crj_A 12 FSDQTEEIMQATYRALREHGYADLTIQRIADEYGKSTAA 50 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHH
T ss_pred chhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChhH
Confidence 445677776665 45585 69999999999988654
No 340
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=28.96 E-value=12 Score=32.65 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=0.0
Q ss_pred ceehhhhhhhcCCCHHHHHHHHHHH
Q 023574 97 RVTIGDVAGKAGLKLNEAQKALQAL 121 (280)
Q Consensus 97 RvTvGDVAa~aGL~L~~Ae~aL~aL 121 (280)
++|+.|||..+|+|...+-++|...
T Consensus 3 ~~ti~diA~~aGVS~~TVSrvLn~~ 27 (349)
T 1jye_A 3 PVTLYDVAEYAGVSYQTVSRVVNQA 27 (349)
T ss_dssp -------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Confidence 5899999999999999999888643
No 341
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=28.87 E-value=83 Score=25.02 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=30.9
Q ss_pred HHHHHHHHc--CCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 86 RAMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 86 ~im~Ave~l--g~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
++|-.+-.. +..+|+.++|.+.|++..-.++-|..|...
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~a 55 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNA 55 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344555443 346999999999999999999999999764
No 342
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=28.73 E-value=76 Score=24.13 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHH
Q 023574 81 ADVRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQA 120 (280)
Q Consensus 81 ~~~~~~im~Ave~l-g~RvTvGDVAa~aGL~L~~Ae~aL~a 120 (280)
...-.++++.+++. ....|+.|+|...|++...-++.+..
T Consensus 10 ~~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 10 AITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34456778888776 66799999999999998877665543
No 343
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=28.51 E-value=5 Score=29.89 Aligned_cols=36 Identities=17% Similarity=0.412 Sum_probs=29.6
Q ss_pred cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 94 CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 94 lg~Rv-TvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.|.++ |+.|+|.+-|++...++++|..|.++ |-++.
T Consensus 31 ~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~--Gli~~ 67 (102)
T 1v4r_A 31 PGDTLPSVADIRAQFGVAAKTVSRALAVLKSE--GLVSS 67 (102)
T ss_dssp TTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTS--SCCEE
T ss_pred CcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEE
Confidence 45666 99999999999999999999999755 44543
No 344
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=28.34 E-value=69 Score=23.46 Aligned_cols=36 Identities=3% Similarity=0.081 Sum_probs=27.5
Q ss_pred HHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHH
Q 023574 85 NRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQA 120 (280)
Q Consensus 85 ~~im~Ave~l-g~RvTvGDVAa~aGL~L~~Ae~aL~a 120 (280)
.++++.+++. ....|+.|+|...|++...-++.+..
T Consensus 8 ~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 8 QNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4566666654 56799999999999998877666544
No 345
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=28.32 E-value=60 Score=25.77 Aligned_cols=39 Identities=10% Similarity=0.016 Sum_probs=31.2
Q ss_pred HHHHHHHH-cCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 86 RAMDAVDA-CNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 86 ~im~Ave~-lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
++|-.+.+ .+..+|+.|+|.+.|++....++.|..|...
T Consensus 18 ~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~ 57 (149)
T 1ylf_A 18 HILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQA 57 (149)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444444 3567999999999999999999999999874
No 346
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=28.05 E-value=1.1e+02 Score=22.78 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=36.5
Q ss_pred CchHHHHHHHHHHHcCCceehhhhhhhc-CCCHHHHHHHHHHHHhhc
Q 023574 80 PADVRNRAMDAVDACNRRVTIGDVAGKA-GLKLNEAQKALQALAADT 125 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg~RvTvGDVAa~a-GL~L~~Ae~aL~aLAsD~ 125 (280)
....+-.|+..+.. +..|++|+|... |++-..+-+.|..|..+.
T Consensus 20 ~~~~~~~IL~~L~~--~~~~~~eLa~~l~~is~~tvs~~L~~Le~~G 64 (112)
T 1z7u_A 20 NGKWKLSLMDELFQ--GTKRNGELMRALDGITQRVLTDRLREMEKDG 64 (112)
T ss_dssp CSTTHHHHHHHHHH--SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHT
T ss_pred cCccHHHHHHHHHh--CCCCHHHHHHHhccCCHHHHHHHHHHHHHCC
Confidence 33445678888874 568999999999 999999999999998874
No 347
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=28.05 E-value=74 Score=28.29 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=43.6
Q ss_pred cCCCCchHHHHHHHHHHHcC-C--ceehhhhhhhcCC------CHHHHHHHHHHHHhhcCCceEec----cCC--cEEEE
Q 023574 76 SDKLPADVRNRAMDAVDACN-R--RVTIGDVAGKAGL------KLNEAQKALQALAADTDGFLEVS----DEG--DVLYV 140 (280)
Q Consensus 76 ~~~l~~~~~~~im~Ave~lg-~--RvTvGDVAa~aGL------~L~~Ae~aL~aLAsD~~GhLqVs----esG--EIlYv 140 (280)
+--|-..++-.|.+++.+.| . ..|+.|+|.++|+ ...-.++=|+.|++ -|-|+.. ++| +-.|.
T Consensus 38 ~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~--~gll~~~~~~~~~g~~~~~y~ 115 (372)
T 1fp1_D 38 PAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLAS--YSVLTSTTRTIEDGGAERVYG 115 (372)
T ss_dssp HHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHH--TTSEEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhh--CCceEecccccCCCCcCCeEe
Confidence 33344455666778887754 2 2999999999998 45566666777765 5666655 345 55676
Q ss_pred cCc
Q 023574 141 FPN 143 (280)
Q Consensus 141 FP~ 143 (280)
-..
T Consensus 116 ~t~ 118 (372)
T 1fp1_D 116 LSM 118 (372)
T ss_dssp ECT
T ss_pred cCH
Confidence 543
No 348
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=28.05 E-value=86 Score=28.47 Aligned_cols=41 Identities=7% Similarity=0.097 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHc-CCceehhhhhhhcCCCHHHHHHHHHHHHh
Q 023574 83 VRNRAMDAVDAC-NRRVTIGDVAGKAGLKLNEAQKALQALAA 123 (280)
Q Consensus 83 ~~~~im~Ave~l-g~RvTvGDVAa~aGL~L~~Ae~aL~aLAs 123 (280)
.+.+|++.+++. |..+|..++|.+-|+|...+.+.+..|-+
T Consensus 4 ~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~ 45 (323)
T 3rkx_A 4 YSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKL 45 (323)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 467899999764 66899999999999999999999999965
No 349
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=27.95 E-value=34 Score=26.04 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=23.9
Q ss_pred chHHHHHHHHH----HHcCCceehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDAV----DACNRRVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~Av----e~lg~RvTvGDVAa~aGL~L~~ 113 (280)
.+.+.+|++|. .+. ..+|+.|||.++|++...
T Consensus 13 ~~~r~~Il~aA~~lf~~~-~~~t~~~Ia~~agvs~~t 48 (190)
T 2v57_A 13 ERTRRAILDAAMLVLADH-PTAALGDIAAAAGVGRST 48 (190)
T ss_dssp CHHHHHHHHHHHHHHTTC-TTCCHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCCCHHHHHHHhCCCHHH
Confidence 34566666554 455 889999999999988654
No 350
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=27.86 E-value=1.8e+02 Score=27.12 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=52.1
Q ss_pred cCCCCchHHHHHHHHHHHc--CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCc-EEEEcCcchHHHHhhh
Q 023574 76 SDKLPADVRNRAMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGD-VLYVFPNNYRAKLAAK 152 (280)
Q Consensus 76 ~~~l~~~~~~~im~Ave~l--g~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGE-IlYvFP~~fRs~l~~K 152 (280)
.+.||.+.+. ++..+--. |..++...++...+.+.++++..|..|.+. +-++++.+|+ -.|.+..-+|..++.+
T Consensus 372 ~~~L~~~~~~-~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~--~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 372 VEMLREDIKD-YYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNK--SLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHTSCTTTHH-HHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHhCCHHHHH-HHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhC--cCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 4566665433 33333322 567888778887888989999999999876 5566776655 4799988889888766
No 351
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=27.85 E-value=31 Score=27.38 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=24.4
Q ss_pred chHHHHHHHH----HHHcCC-ceehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDA----VDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
.+.+.+|++| +.+.|+ .+|+.|||..+|++.-.
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gt 45 (209)
T 2gfn_A 8 DERRRALADAVLALIAREGISAVTTRAVAEESGWSTGV 45 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCcch
Confidence 3456677655 456787 58999999999988643
No 352
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=27.82 E-value=98 Score=21.72 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=29.8
Q ss_pred ccCCCCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023574 75 ESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 75 ~~~~l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~A 114 (280)
..+.+.|.+-.+|-++-++. ..|..|+|...|++....
T Consensus 6 ~~~~~~~~~~~~l~~~r~~~--glsq~~lA~~~gis~~~i 43 (91)
T 1x57_A 6 SGDRVTLEVGKVIQQGRQSK--GLTQKDLATKINEKPQVI 43 (91)
T ss_dssp CSSCCCCHHHHHHHHHHHTT--TCCHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHH
Confidence 34667888888887776665 479999999999987655
No 353
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=27.63 E-value=32 Score=26.17 Aligned_cols=45 Identities=11% Similarity=0.338 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++..+ .++.+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 39 ~q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~--Glv~r 83 (151)
T 3kp7_A 39 EQSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLNA--ELVKL 83 (151)
T ss_dssp HHHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHT--TSEEC
T ss_pred HHHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEe
Confidence 345678888 5567999999999999999999999999876 66663
No 354
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=27.31 E-value=13 Score=31.92 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=15.8
Q ss_pred ceehhhhhhhcCCCHHHHHHHHHH--------------HHhhcC-------CceEeccCCcEEEEcCcchHHHHhhhhHH
Q 023574 97 RVTIGDVAGKAGLKLNEAQKALQA--------------LAADTD-------GFLEVSDEGDVLYVFPNNYRAKLAAKSFR 155 (280)
Q Consensus 97 RvTvGDVAa~aGL~L~~Ae~aL~a--------------LAsD~~-------GhLqVsesGEIlYvFP~~fRs~l~~Ks~r 155 (280)
.+|+.|||..+|+|...+-++|.. .|.+.| -.|.-..++.|-+++|.. .+.+.++.
T Consensus 3 ~~ti~diA~~agVS~~TVSrvln~~~~vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~---~~~~~~~~ 79 (338)
T 3dbi_A 3 LTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRPNLLARNLSAKSTQTLGLVVTNT---LYHGIYFS 79 (338)
T ss_dssp ---------------------------------------------------------CCSEEEEEECTT---TTSTTHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCcCHHHHHhhhCCCCEEEEEecCC---cccChhHH
Confidence 589999999999999988887742 222211 234455567788888752 13344444
Q ss_pred HhHHHHHHHh
Q 023574 156 LKVEPVIDKA 165 (280)
Q Consensus 156 ~rl~~~~~k~ 165 (280)
.-++.+-+.+
T Consensus 80 ~~~~gi~~~a 89 (338)
T 3dbi_A 80 ELLFHAARMA 89 (338)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 355
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=27.24 E-value=44 Score=28.29 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=24.6
Q ss_pred chHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 81 ADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 81 ~~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
...+++|++| +.+.|+. +|+.|||.++|++...
T Consensus 40 ~~tr~~Il~AA~~lf~e~G~~~~S~~~IA~~AGVs~~t 77 (273)
T 3c07_A 40 EQTRALILETAMRLFQERGYDRTTMRAIAQEAGVSVGN 77 (273)
T ss_dssp HHHHHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCccccCHHHHHHHHCCCHHH
Confidence 3556666665 4556875 8999999999998754
No 356
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=27.19 E-value=39 Score=23.97 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=19.8
Q ss_pred CCCchHHHHHHHHHHHcCCceeh
Q 023574 78 KLPADVRNRAMDAVDACNRRVTI 100 (280)
Q Consensus 78 ~l~~~~~~~im~Ave~lg~RvTv 100 (280)
.+..+.+.+|+++++++||+...
T Consensus 29 ~vs~et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 29 RVSDKTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp TCTTHHHHHHHHHHHHHTCCCC-
T ss_pred CCCHHHHHHHHHHHHHhCCCccH
Confidence 68899999999999999997543
No 357
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=27.10 E-value=43 Score=29.84 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=30.2
Q ss_pred eehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 98 VTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 98 vTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
||..|||..+|++++.+++-=++| |.-.+++.++.+|.=
T Consensus 79 vT~~eVAe~aGv~~e~~rr~wRal-----Gfp~~~d~d~r~fte 117 (222)
T 2ev1_A 79 VSAREISENYGVDLELLQRVQRAV-----GLARVDDPDAVVHMR 117 (222)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHH-----CCCCCCCTTCCCEEH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHh-----CCCCCCCCCCccCCH
Confidence 599999999999999987665665 555565557777754
No 358
>2y9k_A Protein INVG; protein transport, type III secretion system, outer membrane secretin family, C15 fold; 8.30A {Salmonella enterica subsp}
Probab=26.98 E-value=55 Score=25.96 Aligned_cols=62 Identities=13% Similarity=0.268 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHHcCCceehhhhhhh---cC-CCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcc
Q 023574 81 ADVRNRAMDAVDACNRRVTIGDVAGK---AG-LKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (280)
Q Consensus 81 ~~~~~~im~Ave~lg~RvTvGDVAa~---aG-L~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~~ 144 (280)
++++.-+-...+..|..+.+.+-+.+ +| ++.++.++.|..|+.-+|=.. -.+|+++|+.|.+
T Consensus 7 ~~l~~vl~~la~~~~~~ivvs~~~v~g~vsg~l~~~~~~~~l~~l~~~~gl~~--~~~G~vl~V~~~~ 72 (137)
T 2y9k_A 7 DSLRTFFDAMALQLKEPVIVSKMAARKKITGNFEFHDPNALLEKLSLQLGLIW--YFDGQAIYIYDAS 72 (137)
T ss_dssp EEHHHHHHHHHHHTTCCEEECHHHHCSEEEEEECSCCHHHHHHHHHHHHTEEE--EECSSCEEEEEGG
T ss_pred CCHHHHHHHHHHhcCCCEEECchhccceEEEEEcCCCHHHHHHHHHHHcCeEE--EEECCEEEEEech
Confidence 34555556666677777777652111 11 556678889999999887544 4589999999974
No 359
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=26.91 E-value=82 Score=24.73 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 86 ~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
..+..++-...+.|+.|||.+-||+.++....|..++..
T Consensus 21 t~~~t~~l~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~ 59 (122)
T 3iuo_A 21 MKVSIVQQIDRKVALDDIAVSHGLDFPELLSEVETIVYS 59 (122)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 446677777789999999999999999999999988754
No 360
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=26.68 E-value=40 Score=24.04 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.1
Q ss_pred CCCchHHHHHHHHHHHcCCcee
Q 023574 78 KLPADVRNRAMDAVDACNRRVT 99 (280)
Q Consensus 78 ~l~~~~~~~im~Ave~lg~RvT 99 (280)
.+..+.+.+|+++++++||+..
T Consensus 35 ~vs~~t~~rV~~~a~~lgY~pn 56 (67)
T 2l8n_A 35 KVSQATRNRVEKAAREVGYLPQ 56 (67)
T ss_dssp CSCHHHHHHHHHHHHHHCCCC-
T ss_pred CCCHHHHHHHHHHHHHhCCCcc
Confidence 4789999999999999999754
No 361
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.66 E-value=1.8e+02 Score=24.65 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=45.1
Q ss_pred CCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcchH
Q 023574 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYR 146 (280)
Q Consensus 79 l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~~fR 146 (280)
+...++...+..+.+.-.++++.++|..-|++.+++|+.|..+..|..=+=..+..-.+|..+...-+
T Consensus 338 l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~ 405 (434)
T 4b4t_Q 338 LYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQ 405 (434)
T ss_dssp HHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC-----
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcch
Confidence 33445555566666667789999999999999999999998887775333334444456666654433
No 362
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=26.58 E-value=53 Score=25.90 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHcC-------CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACN-------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg-------~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
++.|+...+..+. ..+|..|+|...|++...+-+.|..|..+ |-+++
T Consensus 148 ~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~--g~I~~ 201 (220)
T 3dv8_A 148 LDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVE--GLVKL 201 (220)
T ss_dssp HHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEe
Confidence 4455555554433 27899999999999999999999999876 44554
No 363
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=26.54 E-value=69 Score=24.97 Aligned_cols=46 Identities=15% Similarity=0.392 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcC----CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 84 RNRAMDAVDACN----RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 84 ~~~im~Ave~lg----~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
+-.++..+...+ +.+|++|+|...|++...+-+.+..|..+ |-+++
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~--glVr~ 84 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRD--GLVRV 84 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHT--TSBC-
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC--CCEEe
Confidence 456777777654 45999999999999999999999999766 55544
No 364
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=26.29 E-value=14 Score=31.71 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=0.0
Q ss_pred ceehhhhhhhcCCCHHHHHHHHHH
Q 023574 97 RVTIGDVAGKAGLKLNEAQKALQA 120 (280)
Q Consensus 97 RvTvGDVAa~aGL~L~~Ae~aL~a 120 (280)
++|+.|||..+|+|...+-++|..
T Consensus 2 ~~ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 2 LANIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcC
Confidence 479999999999999999988864
No 365
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=26.09 E-value=28 Score=29.79 Aligned_cols=59 Identities=10% Similarity=0.193 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHH----cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 023574 82 DVRNRAMDAVDA----CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (280)
Q Consensus 82 ~~~~~im~Ave~----lg~Rv-TvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~ 143 (280)
.+...|.+.+.. -|.++ |..++|.+-|+|...+++||..|.++ |-|+. ..|-=.||=+.
T Consensus 9 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~--g~i~~-~~g~G~~V~~~ 72 (239)
T 3bwg_A 9 QIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQK--GAIFQ-VRGSGIFVRKH 72 (239)
T ss_dssp HHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEE-ETTTEEEECCC
T ss_pred HHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEE-eCCceEEEecC
Confidence 344555555554 45566 89999999999999999999999987 44443 23333444433
No 366
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=25.76 E-value=1e+02 Score=26.38 Aligned_cols=57 Identities=14% Similarity=0.049 Sum_probs=39.7
Q ss_pred CCCCchHHHHHHHHHHHcCCceehhhhhhhcC--------------CCHHHHHHHHHHHHhhcCCceEecc
Q 023574 77 DKLPADVRNRAMDAVDACNRRVTIGDVAGKAG--------------LKLNEAQKALQALAADTDGFLEVSD 133 (280)
Q Consensus 77 ~~l~~~~~~~im~Ave~lg~RvTvGDVAa~aG--------------L~L~~Ae~aL~aLAsD~~GhLqVse 133 (280)
.++..+.+++|+++++++||+....--+.+++ ---.+.-+++..-|.+.|-++.+..
T Consensus 35 ~~vs~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~ 105 (344)
T 3kjx_A 35 GDVSDATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGV 105 (344)
T ss_dssp SCCCHHHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 46899999999999999999864321111111 1235666788888888888876644
No 367
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=25.75 E-value=73 Score=25.68 Aligned_cols=60 Identities=10% Similarity=0.168 Sum_probs=46.1
Q ss_pred CchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEE
Q 023574 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYv 140 (280)
+.+.-+++++-|-+. .-+|+.-|+.+-.+....|+++|+.|.+..-=.+=+-...-.||.
T Consensus 44 Dk~t~dkl~KEVpk~-KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 103 (108)
T 3iz6_V 44 DKATYDKLLSEVPKY-KQITPSVLSERLRINGSLARQAIKDLESRGAIRVVSVHSSQLIYT 103 (108)
T ss_dssp SSHHHHHHHHHHHHH-SSEEEHHHHHHHHTCCHHHHHHHHHHHHHHTSCEECCCTTSCCEE
T ss_pred CHHHHHHHHHHccCC-eEEeHHHHHhhhcccHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 455667788777775 679999999999999999999999999886544433334556664
No 368
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=25.65 E-value=78 Score=27.65 Aligned_cols=41 Identities=7% Similarity=0.054 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 84 RNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 84 ~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
.+.-++++-.+++.++..|+|..-|++...+..+|..|...
T Consensus 17 ~EdYLk~I~~L~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~ 57 (200)
T 2p8t_A 17 VEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHL 57 (200)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 35667777777788999999999999999999999999875
No 369
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=25.65 E-value=1e+02 Score=24.57 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHHcC--------------CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEecc
Q 023574 81 ADVRNRAMDAVDACN--------------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSD 133 (280)
Q Consensus 81 ~~~~~~im~Ave~lg--------------~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVse 133 (280)
.++..|+...+..+. ..+|..|+|...|++...+-+.|..|..+ |-+++..
T Consensus 133 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~--g~I~~~~ 197 (222)
T 1ft9_A 133 HDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKE--GYISRQG 197 (222)
T ss_dssp HHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHT--TSSEECS
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHC--CcEEEcC
Confidence 456677777777654 23799999999999999999999999765 4566543
No 370
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=25.64 E-value=95 Score=22.63 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=27.4
Q ss_pred HHHHHHHHHcC--CceehhhhhhhcCCCHHHHHHHHHH
Q 023574 85 NRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQA 120 (280)
Q Consensus 85 ~~im~Ave~lg--~RvTvGDVAa~aGL~L~~Ae~aL~a 120 (280)
.++++.+++.- ...|+.|+|...|++...-++.+..
T Consensus 6 ~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 6 REACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 45677776653 6899999999999998877665543
No 371
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=25.60 E-value=1.2e+02 Score=25.12 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADT 125 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~ 125 (280)
..+-.++..+...+ .+|+.|+|...|++...+-+.|..|..+.
T Consensus 48 ~~q~~iL~~L~~~~-~~t~~eLa~~l~i~~stvs~~l~~Le~~G 90 (207)
T 2fxa_A 48 INEHHILWIAYQLN-GASISEIAKFGVMHVSTAFNFSKKLEERG 90 (207)
T ss_dssp HHHHHHHHHHHHHT-SEEHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCC-CcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 34567888888775 69999999999999999999999998774
No 372
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=25.56 E-value=1.5e+02 Score=26.30 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=50.5
Q ss_pred CchHHHHHHHHH-HHcCCceehhhh---hhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcchHH
Q 023574 80 PADVRNRAMDAV-DACNRRVTIGDV---AGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (280)
Q Consensus 80 ~~~~~~~im~Av-e~lg~RvTvGDV---Aa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~~fRs 147 (280)
||..+.-|++.+ ...|+.+.++++ ...-|++-..++.+|--|+++ |-|+.++.| |.....-+.
T Consensus 2 ~~~arSlIlsll~g~~g~~i~~~~Li~l~~~~Gi~e~avRtAlsRL~~~--G~L~~~~~G---Y~LT~~~~~ 68 (247)
T 3kfw_X 2 SLTARSVVLSVLLGAHPAWATASELIQLTADFGIKETTLRVALTRMVGA--GDLVRSADG---YRLSDRLLA 68 (247)
T ss_dssp CCCHHHHHHHHHTTTTTSCBCHHHHHHHHTTTTCCHHHHHHHHHHHHHT--TSEEEETTE---EEECHHHHH
T ss_pred CCCCceeeEeeecCCCCCcccHHHHHHHHHHcCCChHHHHHHHHHHHHc--CCeeccCCc---eeeCHHHHH
Confidence 677888899975 777999999965 557889999999999999875 789988889 877554333
No 373
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=25.31 E-value=80 Score=28.95 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
-+.+|++.+.+.+ .+|..|+|..+||+...+.+-+..|-++
T Consensus 40 n~~~il~~l~~~~-~~sr~ela~~~gls~~tv~~~v~~L~~~ 80 (429)
T 1z05_A 40 NAGRVYKLIDQKG-PISRIDLSKESELAPASITKITRELIDA 80 (429)
T ss_dssp HHHHHHHHHHHHC-SBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CcCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 3456888888764 7999999999999999999888888765
No 374
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=25.23 E-value=43 Score=25.85 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVses 134 (280)
+...+|++++++ ...++.|+|...|++.+++++-|. .+.+.|--..+.++
T Consensus 7 ~l~~~i~~~~~~--~p~~~~~la~~~~~~~~~~~~~l~-~l~~~G~l~~i~~~ 56 (121)
T 2pjp_A 7 AIWQKAEPLFGD--EPWWVRDLAKETGTDEQAMRLTLR-QAAQQGIITAIVKD 56 (121)
T ss_dssp HHHHHHGGGCSS--SCEEHHHHHHHTTCCHHHHHHHHH-HHHHTTSEEEEETT
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHhCCCHHHHHHHHH-HHHHCCCEEEecCC
Confidence 456667777755 346889999999999999965554 44555555566554
No 375
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=25.15 E-value=74 Score=23.90 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.+-.++..+.+ .+.+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 37 ~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~--Glv~r~ 83 (140)
T 3hsr_A 37 TGYIVLMAIEN-DEKLNIKKLGERVFLDSGTLTPLLKKLEKK--DYVVRT 83 (140)
T ss_dssp HHHHHHHHSCT-TCEEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHHC--CCeEec
Confidence 44567777765 458999999999999999999999999876 555543
No 376
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=25.11 E-value=95 Score=25.51 Aligned_cols=38 Identities=8% Similarity=0.100 Sum_probs=29.9
Q ss_pred HHHHHHHc--CCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 87 AMDAVDAC--NRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 87 im~Ave~l--g~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
+|-.+-.. +..+|+.|+|.+.|++..-.++-|..|...
T Consensus 32 ~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 32 ITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 34444433 456999999999999999999999999764
No 377
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=25.08 E-value=1.1e+02 Score=25.63 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHHcCC-ceehhhhhhhcC-CCHHHHHHHHHHHHhhcCCceEecc-------CCc--EEEEcCcchHHH
Q 023574 80 PADVRNRAMDAVDACNR-RVTIGDVAGKAG-LKLNEAQKALQALAADTDGFLEVSD-------EGD--VLYVFPNNYRAK 148 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg~-RvTvGDVAa~aG-L~L~~Ae~aL~aLAsD~~GhLqVse-------sGE--IlYvFP~~fRs~ 148 (280)
....|.+|++.+..... -+|+.|++..-+ ++...+-+-|..|.... -+++-+ .|- -.|.-...=|..
T Consensus 27 ~~~tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaG--LV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~ 104 (151)
T 3u1d_A 27 LHETRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRG--IVEKIPVPRAKSVDDPPTTFYAVTGEGIAL 104 (151)
T ss_dssp CCHHHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT--SEEEEECCCCTTSSSCCCEEEEECHHHHHH
T ss_pred cchHHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCC--CeEEeecCcCcccCCCCceEEEECHHHHHH
Confidence 34578899999987754 489999999988 99999999999998863 344221 122 356665555665
Q ss_pred Hhh
Q 023574 149 LAA 151 (280)
Q Consensus 149 l~~ 151 (280)
|..
T Consensus 105 l~~ 107 (151)
T 3u1d_A 105 LRA 107 (151)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 378
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.04 E-value=2.3e+02 Score=26.11 Aligned_cols=69 Identities=6% Similarity=0.110 Sum_probs=52.7
Q ss_pred CCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcchHH
Q 023574 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRA 147 (280)
Q Consensus 79 l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~~fRs 147 (280)
|-..++.+.+..+-+-=-++|+..+|..=|++.+++|+.|..|-.+..=+=..+.-.-+|+..-.+-|.
T Consensus 329 l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~ 397 (429)
T 4b4t_R 329 FVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKN 397 (429)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-----
T ss_pred HHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchh
Confidence 444567777777777778999999999999999999999999999875566677766788888655554
No 379
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=24.93 E-value=87 Score=20.90 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=23.9
Q ss_pred chHHHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023574 81 ADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 81 ~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~A 114 (280)
+.+..+|-++.++.| .|..|+|...|++....
T Consensus 6 ~~~~~~l~~~r~~~g--~sq~~lA~~~gis~~~i 37 (78)
T 3b7h_A 6 EFVSEHLMELITQQN--LTINRVATLAGLNQSTV 37 (78)
T ss_dssp HHHHHHHHHHHHHTT--CCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHH
Confidence 345566666666665 79999999999987665
No 380
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=24.64 E-value=2.4e+02 Score=23.56 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=33.2
Q ss_pred HcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccC
Q 023574 93 ACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDE 134 (280)
Q Consensus 93 ~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVses 134 (280)
+.++.+|+.|+|..-|++...+-+.|..|..+ |-++...+
T Consensus 16 ~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~--GlV~r~~~ 55 (214)
T 3hrs_A 16 TRHNKITNKEIAQLMQVSPPAVTEMMKKLLAE--ELLIKDKK 55 (214)
T ss_dssp SSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEETT
T ss_pred hcCCCcCHHHHHHHHCCChhHHHHHHHHHHHC--CCEEEecC
Confidence 35778999999999999999999999999987 45554443
No 381
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=24.36 E-value=86 Score=20.45 Aligned_cols=30 Identities=27% Similarity=0.257 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~A 114 (280)
+-.+|-+..++.| .|..|+|...|++....
T Consensus 4 ~~~~l~~~r~~~g--lsq~~lA~~~gis~~~i 33 (71)
T 1zug_A 4 LSERLKKRRIALK--MTQTELATKAGVKQQSI 33 (71)
T ss_dssp HHHHHHHHHHHTT--CCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHhCCCHHHH
Confidence 4556666666655 69999999999997665
No 382
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=24.34 E-value=26 Score=28.33 Aligned_cols=39 Identities=8% Similarity=0.098 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCC-ceehhhhhhhcCCCHHHHHHHHHHHHh
Q 023574 85 NRAMDAVDACNR-RVTIGDVAGKAGLKLNEAQKALQALAA 123 (280)
Q Consensus 85 ~~im~Ave~lg~-RvTvGDVAa~aGL~L~~Ae~aL~aLAs 123 (280)
..|++.++..|| +.++.|+|...|++.+++++.|..+.+
T Consensus 26 ~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~iQ~ 65 (130)
T 2k9m_A 26 LELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVLR 65 (130)
T ss_dssp HHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 445666777787 688999999999999999999987765
No 383
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=23.99 E-value=82 Score=26.91 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=40.9
Q ss_pred CchHHHHHHHHHHH----cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 023574 80 PADVRNRAMDAVDA----CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (280)
Q Consensus 80 ~~~~~~~im~Ave~----lg~Rv-TvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP 142 (280)
-..+...|.+.+.. -|.++ |..++|.+-|+|...+++||..|.++ |-|+.. .|-=.||=+
T Consensus 11 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~--G~i~~~-~g~G~~V~~ 75 (236)
T 3edp_A 11 FEVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEE--GLVVRK-NGVGLYVQP 75 (236)
T ss_dssp HHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEE-TTTEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEEE-CCceEEEcc
Confidence 34455666666664 35667 89999999999999999999999987 345443 333344443
No 384
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=23.94 E-value=1.1e+02 Score=23.93 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHcC-------------CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 82 DVRNRAMDAVDACN-------------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 82 ~~~~~im~Ave~lg-------------~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
+..+|+...+..+. ..+|..|+|...|++...+-+.|..|..+ |-+++
T Consensus 139 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~--g~I~~ 199 (210)
T 3ryp_A 139 DVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQ--NLISA 199 (210)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred CHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHHC--CcEEe
Confidence 34566666665432 15788999999999999999999999876 44444
No 385
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=23.83 E-value=2.1e+02 Score=20.83 Aligned_cols=46 Identities=13% Similarity=0.248 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.+-.++..+...+ .+|+.|+|...|++...+-+.|..|..+ |-++.
T Consensus 35 ~~~~iL~~l~~~~-~~~~~~la~~l~~~~~tvs~~l~~L~~~--gli~r 80 (138)
T 1jgs_A 35 AQFKVLCSIRCAA-CITPVELKKVLSVDLGALTRMLDRLVCK--GWVER 80 (138)
T ss_dssp HHHHHHHHHHHHS-SBCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHCCChHHHHHHHHHHHHC--CCEEe
Confidence 4567888887755 5899999999999999999999999887 45554
No 386
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=23.83 E-value=2.4e+02 Score=21.37 Aligned_cols=42 Identities=12% Similarity=-0.031 Sum_probs=27.8
Q ss_pred CCCCchHHHHHHH-HHHHcCCceehhhhhhhcCCCHHHHHHHH
Q 023574 77 DKLPADVRNRAMD-AVDACNRRVTIGDVAGKAGLKLNEAQKAL 118 (280)
Q Consensus 77 ~~l~~~~~~~im~-Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL 118 (280)
+.||..-+.-+.- .....+...|..+||..-|++.+.+++-+
T Consensus 18 ~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~ 60 (99)
T 3t72_q 18 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIE 60 (99)
T ss_pred HcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3566654443321 11111367899999999999999997765
No 387
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=23.77 E-value=80 Score=24.74 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=38.1
Q ss_pred chHHHHHHHHHHHcC-------------CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 81 ADVRNRAMDAVDACN-------------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 81 ~~~~~~im~Ave~lg-------------~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.+...|+...+..+. ..+|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 110 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~--g~I~~~ 172 (195)
T 3b02_A 110 GELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRRE--GLIATA 172 (195)
T ss_dssp SCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHH--TSEEEE
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEec
Confidence 445677777776532 24789999999999999999999999876 445554
No 388
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=23.77 E-value=2.4e+02 Score=21.38 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.+-.++..+.+. +.+|+.|+|...|++...+-+.|..|..+ |-++-.
T Consensus 51 ~q~~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~~--Glv~r~ 97 (159)
T 3s2w_A 51 GQFPFLMRLYRE-DGINQESLSDYLKIDKGTTARAIQKLVDE--GYVFRQ 97 (159)
T ss_dssp TTHHHHHHHHHS-CSEEHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEe
Confidence 346778888776 56999999999999999999999999876 555443
No 389
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=23.32 E-value=55 Score=28.08 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=40.2
Q ss_pred HHHHHHHHHHH----cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCc
Q 023574 83 VRNRAMDAVDA----CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPN 143 (280)
Q Consensus 83 ~~~~im~Ave~----lg~Rv-TvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~ 143 (280)
+...|.+.+.. -|.++ |..++|.+-|+|...+++||..|.++ |-|+. ..|-=.||=+.
T Consensus 15 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~--G~i~~-~~g~G~~V~~~ 77 (243)
T 2wv0_A 15 IMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNE--GLLYR-LKGRGTFVSKP 77 (243)
T ss_dssp HHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE-CTTSCEEECCC
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CcEEE-eCCCeEEEeCC
Confidence 44455555554 45566 88999999999999999999999987 34443 33433555443
No 390
>1eh6_A O6-alkylguanine-DNA alkyltransferase; methyltransferase, DNA repair; 2.00A {Homo sapiens} SCOP: a.4.2.1 c.55.7.1 PDB: 1eh7_A 1eh8_A*
Probab=23.30 E-value=48 Score=29.11 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=42.1
Q ss_pred hHHHHH-HHHHHHc--CCceehhhhhhhcCCC--HHHHHHHHH--HHHhhcCCceEeccCCcEE
Q 023574 82 DVRNRA-MDAVDAC--NRRVTIGDVAGKAGLK--LNEAQKALQ--ALAADTDGFLEVSDEGDVL 138 (280)
Q Consensus 82 ~~~~~i-m~Ave~l--g~RvTvGDVAa~aGL~--L~~Ae~aL~--aLAsD~~GhLqVsesGEIl 138 (280)
+.+.++ .+++.+. |.-+|-||||...|.+ .-.+-.+|. .++-...||==|..+|.+-
T Consensus 93 ~Fq~~V~~~~l~~IP~G~~~TYg~iA~~~G~p~a~RaVG~A~~~Np~~~~iPCHRVv~~~G~l~ 156 (207)
T 1eh6_A 93 SFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVG 156 (207)
T ss_dssp CHHHHHHHHHHHHCCTTCCEEHHHHHHHTTCTTCHHHHHHHTTSCSSBTTBCGGGEECTTSCCC
T ss_pred HHHHHHHHHHhhcCCCCcEECHHHHHHHHCCCCcHHHHHHHHHhCCCCCcCCCCeEECCCCCCC
Confidence 578899 8999886 6678889999999974 333334442 2334578999999999984
No 391
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=23.17 E-value=1e+02 Score=24.31 Aligned_cols=38 Identities=5% Similarity=0.070 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 86 RAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 86 ~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
++|-.+-+...+ |+.|+|.+.+++..-.++-|..|...
T Consensus 13 ~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~a 50 (145)
T 1xd7_A 13 HILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKA 50 (145)
T ss_dssp HHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344445544446 99999999999999999999888754
No 392
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=23.13 E-value=1.9e+02 Score=20.73 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=37.8
Q ss_pred ccCCCCchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHh
Q 023574 75 ESDKLPADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAA 123 (280)
Q Consensus 75 ~~~~l~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAs 123 (280)
-..+++++.+.+|++.++ . ..++.++|..-|++...+.+-+.....
T Consensus 14 m~~~~s~~~r~~i~~~~~-~--g~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 14 NGRPLPNNIRLKIVEMAA-D--GIRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp TTSCCCHHHHHHHHHHHH-T--TCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHH-c--CCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 355799999999998875 3 368999999999999999888876654
No 393
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=23.12 E-value=1.3e+02 Score=22.08 Aligned_cols=52 Identities=6% Similarity=0.041 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcC----CCHHHHHHHHHHHHhhcCCceEeccCCc
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAG----LKLNEAQKALQALAADTDGFLEVSDEGD 136 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aG----L~L~~Ae~aL~aLAsD~~GhLqVsesGE 136 (280)
..+-.+|.++-+.| .+|+.|||...+ ++...+-.-|..|..+ |-++...+|.
T Consensus 10 ~~q~~vL~~L~~~~-~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k--Glv~R~~~~r 65 (126)
T 1sd4_A 10 MAEWDVMNIIWDKK-SVSANEIVVEIQKYKEVSDKTIRTLITRLYKK--EIIKRYKSEN 65 (126)
T ss_dssp HHHHHHHHHHHHSS-SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHT--TSEEEEEETT
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHC--CceEEEeCCC
Confidence 35678999999876 699999999986 5788887777777764 6676666555
No 394
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=22.80 E-value=84 Score=25.34 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=43.7
Q ss_pred CchHHHHHHHHHHHcCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEE
Q 023574 80 PADVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYV 140 (280)
Q Consensus 80 ~~~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYv 140 (280)
+.+.-+++++-|-+. .-+|+.-|+.+-.+....|+++|+.|.+..-=.+=+-...-.||.
T Consensus 43 Dk~t~dkl~KEVpk~-KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 102 (108)
T 3u5c_Z 43 DQEKYDRILKEVPTY-RYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYT 102 (108)
T ss_dssp TTHHHHHHHHHCSSC-SSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEE
T ss_pred CHHHHHHHHHHccCC-eEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 355556666666553 569999999999999999999999998775443333334566775
No 395
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=22.69 E-value=1.2e+02 Score=23.99 Aligned_cols=47 Identities=28% Similarity=0.430 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCC-------------ceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEe
Q 023574 83 VRNRAMDAVDACNR-------------RVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEV 131 (280)
Q Consensus 83 ~~~~im~Ave~lg~-------------RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqV 131 (280)
.++|+...+..+.. .+|..|+|...|++...+-+.|..|..+ |-+++
T Consensus 160 ~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~--g~I~~ 219 (230)
T 3iwz_A 160 VTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQAD--GLLHA 219 (230)
T ss_dssp HHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHHC--CCEEE
Confidence 44666666665422 3688999999999999999999999875 34444
No 396
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=22.47 E-value=57 Score=30.73 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=49.2
Q ss_pred CcccccCCCCchHHHHHHHHHHHcC--CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcchHHH
Q 023574 71 GRIVESDKLPADVRNRAMDAVDACN--RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNNYRAK 148 (280)
Q Consensus 71 ~~~v~~~~l~~~~~~~im~Ave~lg--~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~~fRs~ 148 (280)
+..|+-..||..+.+..+++++... +..++.++|.+-|+++.+ |.+ -|-+++. ||=.|.+++=+|.-
T Consensus 197 ~~Li~LP~lPi~ld~~~~~~lk~~~~~g~~~~~~la~~lgi~v~~----L~~-----~gli~~~--~~~~~~~~~w~~~~ 265 (324)
T 3qyf_A 197 NDVVILPSPPITIRPKYLDWLIRFAISGYTLSEKRAEELGIPVRL----LEA-----KMLVERK--GEDAYRLKDWVRKL 265 (324)
T ss_dssp TEEEEECCCCEEECHHHHHHHHHHHHHCSEEEHHHHHHTTCCHHH----HHH-----TTSEEEE--TTTEEEECHHHHHH
T ss_pred CceEEcCCCCcccCHHHHHHHHHHHhcCCCCHHHHHHHhCCCHHH----HHH-----CCCeEec--CCCceehHHHHHHH
Confidence 5778889999999999999999884 789999999999999763 222 3455544 44456665555543
No 397
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=22.46 E-value=51 Score=28.19 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=24.6
Q ss_pred CchHHHHHHHH----HHHcCCc-eehhhhhhhcCCCHHH
Q 023574 80 PADVRNRAMDA----VDACNRR-VTIGDVAGKAGLKLNE 113 (280)
Q Consensus 80 ~~~~~~~im~A----ve~lg~R-vTvGDVAa~aGL~L~~ 113 (280)
....+.+|+++ +.+.|+. +|+.|||.++|++...
T Consensus 118 ~~~~r~~il~aa~~l~~~~G~~~~T~~~IA~~AGvs~gt 156 (311)
T 4ich_A 118 QSEARRRILETAWRLIARRGYHNVRIHDIASELGTSNAT 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCchh
Confidence 34555666555 4566865 9999999999988654
No 398
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=22.37 E-value=1.2e+02 Score=23.61 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=28.2
Q ss_pred ceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 97 RVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 97 RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
++|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~--g~I~~~ 197 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQ--GLVHVK 197 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEec
Confidence 4788999999999999999999999875 444443
No 399
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=22.37 E-value=2.4e+02 Score=23.12 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=43.1
Q ss_pred cCCCCchHHHHHHHHHHH----cCCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 023574 76 SDKLPADVRNRAMDAVDA----CNRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (280)
Q Consensus 76 ~~~l~~~~~~~im~Ave~----lg~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP 142 (280)
..++...+-..|.+.+.. -|.+++..++|.+-|+|..-+++||..|.++ |-+++... .=.||-+
T Consensus 10 ~~~l~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~e--Glv~~~~~-~G~~V~~ 77 (218)
T 3sxy_A 10 VDLVRTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATE--GLVKVVPR-VGFFVTD 77 (218)
T ss_dssp ----CHHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHH--TSEEEETT-TEEEECC
T ss_pred cccHHHHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHC--CCEEEeCC-CceEEcC
Confidence 344555555555555544 5778999999999999999999999999987 45554432 2344444
No 400
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=22.32 E-value=2.1e+02 Score=23.54 Aligned_cols=56 Identities=13% Similarity=0.290 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCceehhhhhhhc-----CCCHHHHHHHHHHHHhhcCCceEecc-CCcEEEEcCcc
Q 023574 84 RNRAMDAVDACNRRVTIGDVAGKA-----GLKLNEAQKALQALAADTDGFLEVSD-EGDVLYVFPNN 144 (280)
Q Consensus 84 ~~~im~Ave~lg~RvTvGDVAa~a-----GL~L~~Ae~aL~aLAsD~~GhLqVse-sGEIlYvFP~~ 144 (280)
|...+..+=+.....|+.|++..- ..+-....+.|..| |-.+|.. +|.-.|..|.+
T Consensus 6 R~~~I~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL-----~~vKv~~~~g~~~Y~lp~~ 67 (149)
T 1b4a_A 6 RHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEM-----QLVKVPMANGRYKYSLPSD 67 (149)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHT-----TCEEEECSSSCEEEECTTC
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHHHc-----CCeEEECCCCCEEEEeCCC
Confidence 333444444456678999888865 56666667777766 5567764 69999999976
No 401
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=22.23 E-value=55 Score=25.69 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=24.5
Q ss_pred CchHHHHHHHHHH----HcCC-ceehhhhhhhcCCCHH
Q 023574 80 PADVRNRAMDAVD----ACNR-RVTIGDVAGKAGLKLN 112 (280)
Q Consensus 80 ~~~~~~~im~Ave----~lg~-RvTvGDVAa~aGL~L~ 112 (280)
..+.+++|++|.. +.|+ .+|+.|||.++|++..
T Consensus 10 ~~~tr~~Il~aA~~l~~e~G~~~~s~~~IA~~agvs~~ 47 (198)
T 3cjd_A 10 KAALREKLIDLAEAQIEAEGLASLRARELARQADCAVG 47 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHHHhCChhhcCHHHHHHHhCCCcc
Confidence 3456777776654 4576 7899999999998753
No 402
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=21.98 E-value=1.1e+02 Score=24.36 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=28.6
Q ss_pred ceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 97 RVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 97 RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
++|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~--g~I~~~ 210 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHR--GWIRLE 210 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHC--CCEEec
Confidence 5799999999999999999999999765 455553
No 403
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=21.79 E-value=59 Score=28.56 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHH----cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhc
Q 023574 82 DVRNRAMDAVDA----CNRRV-TIGDVAGKAGLKLNEAQKALQALAADT 125 (280)
Q Consensus 82 ~~~~~im~Ave~----lg~Rv-TvGDVAa~aGL~L~~Ae~aL~aLAsD~ 125 (280)
.+...|.+.+.. -|.++ |..++|.+-|+|...+++||..|.++.
T Consensus 33 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G 81 (272)
T 3eet_A 33 RVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEG 81 (272)
T ss_dssp HHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 344555555554 35567 899999999999999999999999873
No 404
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=21.67 E-value=1.4e+02 Score=25.71 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=34.2
Q ss_pred cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 023574 94 CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (280)
Q Consensus 94 lg~Rv-TvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP 142 (280)
-|.+. |..++|.+-|+|...+++||..|.++ |-|+. .|-=.||=+
T Consensus 32 ~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~--G~i~~--~g~Gt~V~~ 77 (248)
T 3f8m_A 32 IGDPFPAEREIAEQFEVARETVRQALRELLID--GRVER--RGRTTVVAR 77 (248)
T ss_dssp TTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEE--ETTEEEECC
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CCEEe--CCCEEEEcc
Confidence 45666 88999999999999999999999986 55555 333344443
No 405
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=21.66 E-value=1.2e+02 Score=22.83 Aligned_cols=56 Identities=13% Similarity=0.234 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCceehhhhhhhc-CCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEc
Q 023574 84 RNRAMDAVDACNRRVTIGDVAGKA-GLKLNEAQKALQALAADTDGFLEVSDEGDVLYVF 141 (280)
Q Consensus 84 ~~~im~Ave~lg~RvTvGDVAa~a-GL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvF 141 (280)
+..|+..+.....++|++|++... |++-...-+.|..|..+ |-++-...-.+.|.-
T Consensus 29 rl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~--GlV~r~~~r~~~y~L 85 (111)
T 3df8_A 29 TMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDS--GLVERRSGQITTYAL 85 (111)
T ss_dssp HHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHT--TSEEEEESSSEEEEE
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHC--CCEEEeecCcEEEEE
Confidence 567888887333345699999999 99999999999999876 444444335566655
No 406
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=21.58 E-value=1e+02 Score=24.48 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHHc----C----------CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 81 ADVRNRAMDAVDAC----N----------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 81 ~~~~~~im~Ave~l----g----------~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
.+...|+...+..+ | ..+|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 137 ~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~--g~I~~~ 200 (220)
T 2fmy_A 137 KDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKM--GILERV 200 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHT--TSEEES
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHC--CCEEEc
Confidence 35566666666543 2 46899999999999999999999999765 556664
No 407
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=21.51 E-value=68 Score=27.95 Aligned_cols=45 Identities=29% Similarity=0.253 Sum_probs=34.1
Q ss_pred CCceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcCcc
Q 023574 95 NRRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFPNN 144 (280)
Q Consensus 95 g~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP~~ 144 (280)
....|+.|+|.++|++..-.++=|+.|++ .|.|+-.+ + .|.-+.-
T Consensus 54 ~~~~t~~elA~~~~~~~~~l~rlLr~L~~--~gll~~~~--~-~y~~t~~ 98 (352)
T 3mcz_A 54 QTGRTPAEVAASFGMVEGKAAILLHALAA--LGLLTKEG--D-AFRNTAL 98 (352)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEET--T-EEEECHH
T ss_pred CCCCCHHHHHHHhCcChHHHHHHHHHHHH--CCCeEecC--C-eeecCHH
Confidence 34899999999999999999888888887 46666543 2 3665443
No 408
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=21.24 E-value=1.1e+02 Score=19.86 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023574 85 NRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 85 ~~im~Ave~lg~RvTvGDVAa~aGL~L~~A 114 (280)
.+|-+..++.| .|..|+|...|++....
T Consensus 4 ~~l~~~r~~~g--lsq~~lA~~~gis~~~i 31 (69)
T 1r69_A 4 SRVKSKRIQLG--LNQAELAQKVGTTQQSI 31 (69)
T ss_dssp HHHHHHHHHTT--CCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHCcCHHHH
Confidence 45555555554 78999999999987665
No 409
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=21.13 E-value=98 Score=19.89 Aligned_cols=31 Identities=6% Similarity=0.000 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~A 114 (280)
.+-.++-++.++.| .|..|+|...|++....
T Consensus 5 ~~~~~l~~~r~~~g--~s~~~lA~~~gis~~~i 35 (68)
T 2r1j_L 5 LMGERIRARRKKLK--IRQAALGKMVGVSNVAI 35 (68)
T ss_dssp CHHHHHHHHHHHHT--CCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHCCCHHHH
Confidence 45566777777665 69999999999987665
No 410
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=21.06 E-value=96 Score=25.65 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=41.2
Q ss_pred chHHHHHHHHHHH----cCCce-ehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcEEEEcC
Q 023574 81 ADVRNRAMDAVDA----CNRRV-TIGDVAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDVLYVFP 142 (280)
Q Consensus 81 ~~~~~~im~Ave~----lg~Rv-TvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEIlYvFP 142 (280)
..+-..|.+.+.. -|-+. |-.++|.+-|+|-..+++||..|.++ |-+++.. |.=.||=+
T Consensus 10 ~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~e--Glv~~~~-g~G~~V~~ 73 (239)
T 1hw1_A 10 GFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARD--GWLTIQH-GKPTKVNN 73 (239)
T ss_dssp HHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEET-TEEEEECC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC--CcEEEec-CCCcEeeC
Confidence 3444555555554 35666 88999999999999999999999987 5565543 22345543
No 411
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=21.04 E-value=1.2e+02 Score=19.92 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~A 114 (280)
.+-.++-+..++.| .|..|+|...|++....
T Consensus 13 ~~~~~l~~~r~~~g--~s~~~lA~~~gis~~~i 43 (74)
T 1y7y_A 13 KFGQRLRELRTAKG--LSQETLAFLSGLDRSYV 43 (74)
T ss_dssp HHHHHHHHHHHHTT--CCHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHH
Confidence 44555656655554 79999999999987665
No 412
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=20.86 E-value=1.4e+02 Score=23.38 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHcC-------------CceehhhhhhhcCCCHHHHHHHHHHHHhhcCCceEec
Q 023574 83 VRNRAMDAVDACN-------------RRVTIGDVAGKAGLKLNEAQKALQALAADTDGFLEVS 132 (280)
Q Consensus 83 ~~~~im~Ave~lg-------------~RvTvGDVAa~aGL~L~~Ae~aL~aLAsD~~GhLqVs 132 (280)
+..|+...+..+. ..+|..|+|...|++...+-+.|..|..+ |-+++.
T Consensus 119 ~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~--g~I~~~ 179 (202)
T 2zcw_A 119 LKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELARE--GYIRSG 179 (202)
T ss_dssp HHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT--TSEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHC--CCEEeC
Confidence 4556666666542 24788999999999999999999999765 455543
No 413
>4ac0_A Tetracycline repressor protein class B from trans TN1 0; transcription; HET: MIY; 2.45A {Escherichia coli}
Probab=20.78 E-value=32 Score=28.31 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=20.6
Q ss_pred HHHHHHHcCC-ceehhhhhhhcCCCHHH
Q 023574 87 AMDAVDACNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 87 im~Ave~lg~-RvTvGDVAa~aGL~L~~ 113 (280)
.++.+.+.|+ .+|+.|||.++|++...
T Consensus 12 A~~l~~~~G~~~~s~~~IA~~aGvs~~t 39 (202)
T 4ac0_A 12 ALELLNEVGIEGLTTRKLAQKLGVEQPT 39 (202)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTSCHHH
T ss_pred HHHHHHhcCcccCCHHHHHHHhCCCchh
Confidence 3444555688 79999999999988654
No 414
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=20.76 E-value=98 Score=20.46 Aligned_cols=31 Identities=6% Similarity=0.000 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHcCCceehhhhhhhcCCCHHHH
Q 023574 82 DVRNRAMDAVDACNRRVTIGDVAGKAGLKLNEA 114 (280)
Q Consensus 82 ~~~~~im~Ave~lg~RvTvGDVAa~aGL~L~~A 114 (280)
++-.++-++.++.| .|..|+|...|++....
T Consensus 5 ~~~~~l~~~r~~~g--ls~~~lA~~~gis~~~i 35 (76)
T 1adr_A 5 LMGERIRARRKKLK--IRQAALGKMVGVSNVAI 35 (76)
T ss_dssp CHHHHHHHHHHHHT--CCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHH
Confidence 45567777777665 69999999999987655
No 415
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=20.64 E-value=1.6e+02 Score=24.18 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=43.2
Q ss_pred CCchHHHHHHHHHHHcCCceehhhhhhhcC-CCHHHHHHHHHHHHhhcCCceEeccCCc
Q 023574 79 LPADVRNRAMDAVDACNRRVTIGDVAGKAG-LKLNEAQKALQALAADTDGFLEVSDEGD 136 (280)
Q Consensus 79 l~~~~~~~im~Ave~lg~RvTvGDVAa~aG-L~L~~Ae~aL~aLAsD~~GhLqVsesGE 136 (280)
|.-..|-+|++.+. .+..|++++|..-| ++...+-+-|..|... |-++|.++|.
T Consensus 20 La~P~Rl~il~~L~--~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~a--glv~~~~e~~ 74 (182)
T 4g6q_A 20 LHHPLRWRITQLLI--GRSLTTRELAELLPDVATTTLYRQVGILVKA--GVLMVTAEHQ 74 (182)
T ss_dssp TTSHHHHHHHHHTT--TSCEEHHHHHHHCTTBCHHHHHHHHHHHHHH--TSEEEEEEEE
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC--CCeEEEEeec
Confidence 55668899999985 46799999999975 8998888888888764 7788877753
No 416
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=20.61 E-value=3.3e+02 Score=24.47 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=51.4
Q ss_pred CchHHHHHHHHH----HHcCCceehhh---hhhhcCCCHHHHHHHHHHHHhhcCCceEeccCCcE-EEEcCcchHHHH
Q 023574 80 PADVRNRAMDAV----DACNRRVTIGD---VAGKAGLKLNEAQKALQALAADTDGFLEVSDEGDV-LYVFPNNYRAKL 149 (280)
Q Consensus 80 ~~~~~~~im~Av----e~lg~RvTvGD---VAa~aGL~L~~Ae~aL~aLAsD~~GhLqVsesGEI-lYvFP~~fRs~l 149 (280)
|+..+.-|+..+ ...|+.+.+++ ++..-|++-..++.+|..|.++ |.|+..+.|.- .|.-...=+..+
T Consensus 21 ~~~a~Sli~tl~Gd~~~~~g~~i~~~~Li~l~~~~Gi~~~avR~Al~RL~~~--G~l~~~~~Gr~~~Y~Lt~~g~~~l 96 (266)
T 3l09_A 21 PLKLWSVLVTCLGDVSRDGVIEVSGVALSSFVERMGLQPQAMRVALHRLKRD--GWVESRRLGRVGFHRLSDSALTQT 96 (266)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCCEEHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TSEEEEEETTEEEEEECHHHHHHH
T ss_pred CCChhHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCchHHHHHHHHHHHC--CCeeeeecCCcceEEECHHHHHHH
Confidence 456666666655 88899999997 7778999999999999999875 78988887654 455544444444
No 417
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=20.42 E-value=1.2e+02 Score=22.46 Aligned_cols=41 Identities=10% Similarity=0.153 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCceehhhhhhhc-CCCHHHHHHHHHHHHhhc
Q 023574 83 VRNRAMDAVDACNRRVTIGDVAGKA-GLKLNEAQKALQALAADT 125 (280)
Q Consensus 83 ~~~~im~Ave~lg~RvTvGDVAa~a-GL~L~~Ae~aL~aLAsD~ 125 (280)
.+-.|+.++. .+..|+.|+|... |++-..+-+.|..|..+.
T Consensus 15 ~~~~IL~~L~--~~~~~~~eLa~~l~~is~~tls~~L~~Le~~G 56 (107)
T 2hzt_A 15 WKXVILXHLT--HGKKRTSELKRLMPNITQKMLTQQLRELEADG 56 (107)
T ss_dssp THHHHHHHHT--TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHH--hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCC
Confidence 3456788885 4679999999999 999999999999998763
No 418
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=20.39 E-value=50 Score=26.20 Aligned_cols=42 Identities=5% Similarity=-0.019 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCC--ceehhhhhhhcCCCHHHHHHHHHHHHhh
Q 023574 83 VRNRAMDAVDACNR--RVTIGDVAGKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 83 ~~~~im~Ave~lg~--RvTvGDVAa~aGL~L~~Ae~aL~aLAsD 124 (280)
.+-.++.++...+. .+|+.|+|...|++...+-+.|..|..+
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~ 113 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEK 113 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 46778899988876 5999999999999999999999999887
No 419
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=20.34 E-value=1.3e+02 Score=27.14 Aligned_cols=51 Identities=24% Similarity=0.273 Sum_probs=37.6
Q ss_pred cccccCCCCchHHHHHHHHHHHcCCceehhhhh--------hhcCCCHHHHHHHHHHHHhh
Q 023574 72 RIVESDKLPADVRNRAMDAVDACNRRVTIGDVA--------GKAGLKLNEAQKALQALAAD 124 (280)
Q Consensus 72 ~~v~~~~l~~~~~~~im~Ave~lg~RvTvGDVA--------a~aGL~L~~Ae~aL~aLAsD 124 (280)
+..+-++|| .+.+...+.+++.|+. |+.||+ ..+|++.++|++.|.+....
T Consensus 33 ~~~~l~~l~-Gi~~~~~~kL~~ag~~-t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~~~ 91 (349)
T 1pzn_A 33 IIRSIEDLP-GVGPATAEKLREAGYD-TLEAIAVASPIELKEVAGISEGTALKIIQAARKA 91 (349)
T ss_dssp --CCSSCCT-TCCHHHHHHHHTTTCC-SHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccHHHcC-CCCHHHHHHHHHcCCC-cHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhhh
Confidence 334567776 7889999999998875 555554 57899999999888776554
No 420
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=20.14 E-value=1.5e+02 Score=26.59 Aligned_cols=58 Identities=28% Similarity=0.360 Sum_probs=43.9
Q ss_pred ccCCCCchHHHHHHHHHHHcCCce-----ehhhhhhhcCCCHHHHHHHHHHHHhhc---CCceEec
Q 023574 75 ESDKLPADVRNRAMDAVDACNRRV-----TIGDVAGKAGLKLNEAQKALQALAADT---DGFLEVS 132 (280)
Q Consensus 75 ~~~~l~~~~~~~im~Ave~lg~Rv-----TvGDVAa~aGL~L~~Ae~aL~aLAsD~---~GhLqVs 132 (280)
+.+.||++.|-++|+.++.++-.. =+-|....-+-.+..++.++..|..+. .++-+|+
T Consensus 110 ~~~~l~p~~r~~~~~~~~~l~e~~~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~Va 175 (242)
T 3rag_A 110 STEDLPPADRARVMQVVEKLEDEVALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVS 175 (242)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHSCEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEE
T ss_pred ccccCCcchhcchhhhhhhhcccCCCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEE
Confidence 888999999999999999955432 233666655569999999999998863 3455554
No 421
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=20.07 E-value=57 Score=27.33 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHH----cCC-ceehhhhhhhcCCCHHH
Q 023574 82 DVRNRAMDAVDA----CNR-RVTIGDVAGKAGLKLNE 113 (280)
Q Consensus 82 ~~~~~im~Ave~----lg~-RvTvGDVAa~aGL~L~~ 113 (280)
..+++|+++..+ .|+ .+|+.+||.++|++...
T Consensus 29 ~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~t 65 (241)
T 2hxi_A 29 WSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSS 65 (241)
T ss_dssp CCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHH
T ss_pred hHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHH
Confidence 345666666554 476 68999999999988754
Done!