BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023575
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F82|A Chain A, Hmg-Coa Synthase From Brassica Juncea In The Apo-Form
pdb|2F9A|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With
F-244
pdb|2FA0|A Chain A, Hmg-coa Synthase From Brassica Juncea In Complex With
Hmg-coa And Covalently Bound To Hmg-coa
Length = 450
Score = 514 bits (1323), Expect = e-146, Method: Compositional matrix adjust.
Identities = 237/269 (88%), Positives = 252/269 (93%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPTCV QEALE HDG SKGKYT+GLGQDC+AFC+E+EDVISMS VT
Sbjct: 2 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 61
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNACYGGTA
Sbjct: 62 SLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTA 121
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
AL NCVNWVES SWDGRYGLV+CTDSAVYAEGPARPTGGAAA+AMLIGPDAPI FESKLR
Sbjct: 122 ALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLR 181
Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
GSHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+ C KFEKLEG++FS+ D D
Sbjct: 182 GSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDAD 241
Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNAS 275
YFVFHSPYNKLVQKSFARL +NDFLRNAS
Sbjct: 242 YFVFHSPYNKLVQKSFARLLYNDFLRNAS 270
>pdb|2FA3|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With
Acetyl-Coa And Acetyl-Cys117
Length = 450
Score = 510 bits (1314), Expect = e-145, Method: Compositional matrix adjust.
Identities = 236/269 (87%), Positives = 251/269 (93%)
Query: 7 KNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVT 66
KNVGILA+DIYFPPTCV QEALE HDG SKGKYT+GLGQDC+AFC+E+EDVISMS VT
Sbjct: 2 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVT 61
Query: 67 SLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTA 126
SLLEKYKIDP QIGRLEVGSETVIDKSKSIKTFLMQ+FEK GNTD+EGVDSTNA YGGTA
Sbjct: 62 SLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNAXYGGTA 121
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLR 186
AL NCVNWVES SWDGRYGLV+CTDSAVYAEGPARPTGGAAA+AMLIGPDAPI FESKLR
Sbjct: 122 ALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPARPTGGAAAIAMLIGPDAPIVFESKLR 181
Query: 187 GSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVD 246
GSHM+H YDFYKPNLASEYPVVDGKLSQTCYLMALDSCYK+ C KFEKLEG++FS+ D D
Sbjct: 182 GSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFEKLEGKEFSINDAD 241
Query: 247 YFVFHSPYNKLVQKSFARLFFNDFLRNAS 275
YFVFHSPYNKLVQKSFARL +NDFLRNAS
Sbjct: 242 YFVFHSPYNKLVQKSFARLLYNDFLRNAS 270
>pdb|2WYA|A Chain A, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|B Chain B, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|C Chain C, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
pdb|2WYA|D Chain D, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3-
Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2)
Length = 460
Score = 355 bits (910), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 169/275 (61%), Positives = 209/275 (76%), Gaps = 5/275 (1%)
Query: 6 PKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVV 65
PK+VGILAL++YFP V Q LE ++ V GKYTVGLGQ M FCS ED+ S+ LTVV
Sbjct: 3 PKDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVV 62
Query: 66 TSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGT 125
L+E+ ++ +GRLEVG+ET+IDKSK++KT LM++F+ GNTDIEG+D+TNACYGGT
Sbjct: 63 QRLMERIQLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGT 122
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKL 185
A+LFN NW+ES+SWDGRY +VVC D AVY G ARPTGGA AVAMLIGP AP+A E L
Sbjct: 123 ASLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNARPTGGAGAVAMLIGPKAPLALERGL 182
Query: 186 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG--RQF 240
RG+HM + YDFYKPNLASEYP+VDGKLS CYL ALD CY + +K + K G R F
Sbjct: 183 RGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKIQNQWKQAGSDRPF 242
Query: 241 SMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNAS 275
++ D+ Y +FH+P+ K+VQKS ARL FNDFL +S
Sbjct: 243 TLDDLQYMIFHTPFCKMVQKSLARLMFNDFLSASS 277
>pdb|2P8U|A Chain A, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa
Synthase I
pdb|2P8U|B Chain B, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa
Synthase I
Length = 478
Score = 353 bits (906), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 167/277 (60%), Positives = 210/277 (75%), Gaps = 5/277 (1%)
Query: 4 WHPKNVGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLT 63
+ +VGI+AL+IYFP V Q LE +DGV GKYT+GLGQ M FC++ ED+ S+ +T
Sbjct: 20 FQSMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMT 79
Query: 64 VVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYG 123
VV +L+E+ + IGRLEVG+ET+IDKSKS+KT LMQ+FE+ GNTDIEG+D+TNA YG
Sbjct: 80 VVQNLMERNNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNAXYG 139
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFES 183
GTAA+FN VNW+ES+SWDGRY LVV D AVYA G ARPTGG AVA+LIGP+AP+ FE
Sbjct: 140 GTAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNARPTGGVGAVALLIGPNAPLIFER 199
Query: 184 KLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFE---KLEG--R 238
LRG+HM HAYDFYKP++ SEYP+VDGKLS CYL ALD CY +C+K + EG +
Sbjct: 200 GLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIHAQWQKEGNDK 259
Query: 239 QFSMLDVDYFVFHSPYNKLVQKSFARLFFNDFLRNAS 275
F++ D + +FHSPY KLVQKS AR+ NDFL + +
Sbjct: 260 DFTLNDFGFMIFHSPYCKLVQKSLARMLLNDFLNDQN 296
>pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
pdb|1X9E|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis
Length = 383
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 118/257 (45%), Gaps = 18/257 (7%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI + + PP + AL V GK+ +G+GQD MA +D+++ + ++
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 62
Query: 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIF--EKYGNTDIEGVDSTNACYGGTA 126
L K D I + VG+E+ ID+SK+ L ++ + + + + ACYG TA
Sbjct: 63 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEACYGATA 116
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVAMLIGPDAPIAFESKL 185
L N V A + LVV D A Y PT GA AVAML+ + I +
Sbjct: 117 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKED 174
Query: 186 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 245
YDF++P YP+VDG LS Y+ + + + +K G F+ D
Sbjct: 175 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVW----DEHKKRTGLDFA--DY 227
Query: 246 DYFVFHSPYNKLVQKSF 262
D FH PY K+ +K+
Sbjct: 228 DALAFHIPYTKMGKKAL 244
>pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
pdb|3V4X|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By
Hymeglusin
Length = 388
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 118/257 (45%), Gaps = 18/257 (7%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI + + PP + AL V GK+ +G+GQD MA +D+++ + ++
Sbjct: 8 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 67
Query: 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIF--EKYGNTDIEGVDSTNACYGGTA 126
L K D I + VG+E+ ID+SK+ L ++ + + + + ACYG TA
Sbjct: 68 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEACYGATA 121
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVAMLIGPDAPIAFESKL 185
L N V A + LVV D A Y PT GA AVAML+ + I +
Sbjct: 122 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVSSEPRILALKED 179
Query: 186 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 245
YDF++P YP+VDG LS Y+ + + + +K G F+ D
Sbjct: 180 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVW----DEHKKRTGLDFA--DY 232
Query: 246 DYFVFHSPYNKLVQKSF 262
D FH PY K+ +K+
Sbjct: 233 DALAFHIPYTKMGKKAL 249
>pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
pdb|2HDB|B Chain B, Hmg-coa Synthase From Enterococcus Faecalis. Mutation
Alanine 110 To Glycine
Length = 383
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 117/257 (45%), Gaps = 18/257 (7%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI + + PP + AL V GK+ +G+GQD MA +D+++ + ++
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 62
Query: 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIF--EKYGNTDIEGVDSTNACYGGTA 126
L K D I + VG+E+ ID+SK+ L ++ + + + + CYG TA
Sbjct: 63 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEGCYGATA 116
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVAMLIGPDAPIAFESKL 185
L N V A + LVV D A Y PT GA AVAML+ + I +
Sbjct: 117 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKED 174
Query: 186 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 245
YDF++P YP+VDG LS Y+ + + + +K G F+ D
Sbjct: 175 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVW----DEHKKRTGLDFA--DY 227
Query: 246 DYFVFHSPYNKLVQKSF 262
D FH PY K+ +K+
Sbjct: 228 DALAFHIPYTKMGKKAL 244
>pdb|1YSL|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 402
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 117/257 (45%), Gaps = 18/257 (7%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI + + PP + AL V GK+ +G+GQD MA +D+++ + ++
Sbjct: 22 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 81
Query: 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIF--EKYGNTDIEGVDSTNACYGGTA 126
L K D I + VG+E+ ID+SK+ L ++ + + + + A YG TA
Sbjct: 82 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEAXYGATA 135
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVAMLIGPDAPIAFESKL 185
L N V A + LVV D A Y PT GA AVAML+ + I +
Sbjct: 136 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKED 193
Query: 186 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 245
YDF++P YP+VDG LS Y+ + + + +K G F+ D
Sbjct: 194 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVW----DEHKKRTGLDFA--DY 246
Query: 246 DYFVFHSPYNKLVQKSF 262
D FH PY K+ +K+
Sbjct: 247 DALAFHIPYTKMGKKAL 263
>pdb|3V4N|A Chain A, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|B Chain B, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|C Chain C, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
pdb|3V4N|D Chain D, The Biochemical And Structural Basis For Inhibition Of
Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By
Hymeglusin
Length = 388
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 117/257 (45%), Gaps = 18/257 (7%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI + + PP + AL V GK+ +G+GQD MA +D+++ + ++
Sbjct: 8 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 67
Query: 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIF--EKYGNTDIEGVDSTNACYGGTA 126
L K D I + VG+E+ ID+SK+ L ++ + + + + A YG TA
Sbjct: 68 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEAXYGATA 121
Query: 127 ALFNCVNWVESASWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVAMLIGPDAPIAFESKL 185
L N V A + LVV D A Y PT GA AVAML+ + I +
Sbjct: 122 GLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVSSEPRILALKED 179
Query: 186 RGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDV 245
YDF++P YP+VDG LS Y+ + + + +K G F+ D
Sbjct: 180 NVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVW----DEHKKRTGLDFA--DY 232
Query: 246 DYFVFHSPYNKLVQKSF 262
D FH PY K+ +K+
Sbjct: 233 DALAFHIPYTKMGKKAL 249
>pdb|1YSL|B Chain B, Crystal Structure Of Hmg-Coa Synthase From Enterococcus
Faecalis With Acetoacetyl-Coa Ligand
Length = 384
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 118/258 (45%), Gaps = 19/258 (7%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI + + PP + AL V GK+ +G+GQD MA +D+++ + ++
Sbjct: 3 IGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAI 62
Query: 69 LEKYKIDPTQIGRLEVGSETVIDKSKSIKTFLMQIF--EKYGNTDIEGVDSTNAC-YGGT 125
L K D I + VG+E+ ID+SK+ L ++ + + + + AC YG T
Sbjct: 63 LTKE--DKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARS----FEIKEACXYGAT 116
Query: 126 AALFNCVNWVESASWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVAMLIGPDAPIAFESK 184
A L N V A + LVV D A Y PT GA AVAML+ + I +
Sbjct: 117 AGLQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGGEPTQGAGAVAMLVASEPRILALKE 174
Query: 185 LRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLD 244
YDF++P YP+VDG LS Y+ + + + +K G F+ D
Sbjct: 175 DNVMLTQDIYDFWRPT-GHPYPMVDGPLSNETYIQSFAQVW----DEHKKRTGLDFA--D 227
Query: 245 VDYFVFHSPYNKLVQKSF 262
D FH PY K+ +K+
Sbjct: 228 YDALAFHIPYTKMGKKAL 245
>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 119/266 (44%), Gaps = 24/266 (9%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI ++ Y P V L V K+ +G+GQ MA +D++SM +
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 69 LEKYKIDPTQIGRLEVGSET----VIDKSKSIKTFL-MQIFEKYGNTDIEGVDSTNACYG 123
+ D +IG + V +E+ + I L +Q F + + ACY
Sbjct: 63 ITDE--DKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFAR-------CFEMKEACYA 113
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVAMLIGPDAPIAFE 182
T A+ +++ A+ LV+ TD+A Y PT GA AVAM+I + I
Sbjct: 114 ATPAIQLAKDYL--ATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILAL 171
Query: 183 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM 242
++ ++ YDF++P +YP+VDG LS+ Y+ + + ++ K +G+ S+
Sbjct: 172 NEDAVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SL 224
Query: 243 LDVDYFVFHSPYNKLVQKSFARLFFN 268
D FH P+ K+ +K+ + N
Sbjct: 225 ADFASLCFHVPFTKMGKKALESIIDN 250
>pdb|1XPL|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPL|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-coa
Synthase With Acetoacetyl-coa And Acetylated Cysteine
pdb|1XPM|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
pdb|1XPM|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg-Coa And Acetoacetyl-Coa And Acetylated
Cysteine
Length = 390
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 117/266 (43%), Gaps = 23/266 (8%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI ++ Y P V L V K+ +G+GQ MA +D++SM +
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61
Query: 69 LEKYKIDPTQIGRLEVGSET----VIDKSKSIKTFL-MQIFEKYGNTDIEGVDSTNACYG 123
+ D +IG + V +E+ + I L +Q F + CY
Sbjct: 62 ITDE--DKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEM------KEAXCYA 113
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVAMLIGPDAPIAFE 182
T A+ +++ A+ LV+ TD+A Y PT GA AVAM+I + I
Sbjct: 114 ATPAIQLAKDYL--ATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILAL 171
Query: 183 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM 242
++ ++ YDF++P +YP+VDG LS+ Y+ + + ++ K +G+ S+
Sbjct: 172 NEDAVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SL 224
Query: 243 LDVDYFVFHSPYNKLVQKSFARLFFN 268
D FH P+ K+ +K+ + N
Sbjct: 225 ADFASLCFHVPFTKMGKKALESIIDN 250
>pdb|1XPK|A Chain A, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
pdb|1XPK|D Chain D, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 117/266 (43%), Gaps = 23/266 (8%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI ++ Y P V L V K+ +G+GQ MA +D++SM +
Sbjct: 2 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 61
Query: 69 LEKYKIDPTQIGRLEVGSET----VIDKSKSIKTFL-MQIFEKYGNTDIEGVDSTNACYG 123
+ D +IG + V +E+ + I L +Q F + CY
Sbjct: 62 ITDE--DKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEM------KEAXCYA 113
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVAMLIGPDAPIAFE 182
T A+ +++ A+ LV+ TD+A Y PT GA AVAM+I + I
Sbjct: 114 ATPAIQLAKDYL--ATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILAL 171
Query: 183 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM 242
++ ++ YDF++P +YP+VDG LS+ Y+ + + ++ K +G+ S+
Sbjct: 172 NEDAVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SL 224
Query: 243 LDVDYFVFHSPYNKLVQKSFARLFFN 268
D FH P+ K+ +K+ + N
Sbjct: 225 ADFASLCFHVPFTKMGKKALESIIDN 250
>pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme A
Synthase From Staphylococcus Aureus
pdb|1TXT|A Chain A, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|B Chain B, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|C Chain C, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
pdb|1TXT|D Chain D, Staphylococcus Aureus 3-hydroxy-3-methylglutaryl-coa
Synthase
Length = 388
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 118/266 (44%), Gaps = 24/266 (9%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI ++ Y P V L V K+ +G+GQ MA +D++SM +
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 69 LEKYKIDPTQIGRLEVGSET----VIDKSKSIKTFL-MQIFEKYGNTDIEGVDSTNACYG 123
+ D +IG + V +E+ + I L +Q F + + A Y
Sbjct: 63 ITDE--DKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFAR-------CFEMKEAXYA 113
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVAMLIGPDAPIAFE 182
T A+ +++ A+ LV+ TD+A Y PT GA AVAM+I + I
Sbjct: 114 ATPAIQLAKDYL--ATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILAL 171
Query: 183 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM 242
++ ++ YDF++P +YP+VDG LS+ Y+ + + ++ K +G+ S+
Sbjct: 172 NEDAVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SL 224
Query: 243 LDVDYFVFHSPYNKLVQKSFARLFFN 268
D FH P+ K+ +K+ + N
Sbjct: 225 ADFASLCFHVPFTKMGKKALESIIDN 250
>pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa
Synthase With Hmg- Coa And With Acetoacetyl-Coa And
Acetylated Cysteine
Length = 388
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 118/266 (44%), Gaps = 24/266 (9%)
Query: 9 VGILALDIYFPPTCVLQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSL 68
+GI ++ Y P V L V K+ +G+GQ MA +D++SM +
Sbjct: 3 IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDI 62
Query: 69 LEKYKIDPTQIGRLEVGSET----VIDKSKSIKTFL-MQIFEKYGNTDIEGVDSTNACYG 123
+ D +IG + V +E+ + I L +Q F + + A Y
Sbjct: 63 ITDE--DKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFAR-------CFEMKEAXYA 113
Query: 124 GTAALFNCVNWVESASWDGRYGLVVCTDSAVYA-EGPARPTGGAAAVAMLIGPDAPIAFE 182
T A+ +++ A+ LV+ TD+A Y PT GA AVAM+I + I
Sbjct: 114 ATPAIQLAKDYL--ATRPNEKVLVIATDTARYGLNSGGEPTQGAGAVAMVIAHNPSILAL 171
Query: 183 SKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSM 242
++ ++ YDF++P +YP+VDG LS+ Y+ + + ++ K +G+ S+
Sbjct: 172 NEDAVAYTEDVYDFWRPT-GHKYPLVDGALSKDAYIRSFQQSW----NEYAKRQGK--SL 224
Query: 243 LDVDYFVFHSPYNKLVQKSFARLFFN 268
D FH P+ K+ +K+ + N
Sbjct: 225 ADFASLCFHVPFTKMGKKALESIIDN 250
>pdb|3LEH|A Chain A, The Crystal Structure Of Smu.943c From Streptococcus
Mutans Ua159
Length = 425
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 18/232 (7%)
Query: 38 KYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDKSKSIK 97
K++ GL + ++ +DV++++ +L D +I + + +E+ +D+SK+
Sbjct: 66 KFSKGLLLNALSIAPITDDVVTLAAGSANEILTAE--DKEKIDMVILATESSVDQSKAGA 123
Query: 98 TFLMQIF--EKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCTDSAVY 155
++ + + + + + ACY TAAL VE D R LV+ +D A Y
Sbjct: 124 VYVHSLLGIQPFARS----FEMKEACYSATAALNYAKLHVEKHP-DTRV-LVLASDIAKY 177
Query: 156 AEG-PARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQ 214
G P T GA ++AML+ D I + DF++PN + P V+G S
Sbjct: 178 GIGTPGESTQGAGSIAMLVKKDPRILILHDETLAQTRDIMDFWRPNYTTT-PYVNGMYST 236
Query: 215 TCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLF 266
YL L + + + ++F+ S+ D F FH P+ KL K F ++
Sbjct: 237 KQYLDMLKTTWAEYQKRFD------VSLTDFAAFCFHLPFPKLALKGFNKIM 282
>pdb|3SQZ|A Chain A, Crystal Structure Of Hmg_coa Synthase Complexed With Coa
Length = 389
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 108/237 (45%), Gaps = 17/237 (7%)
Query: 33 GVSKGKYTVGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYKIDPTQIGRLEVGSETVIDK 92
G K++ GL + ++ +DV++++ +L D +I + + +E+ +D+
Sbjct: 27 GEDPQKFSKGLLLNALSIAPITDDVVTLAAGSANEILTAE--DKEKIDMVILATESSVDQ 84
Query: 93 SKSIKTFLMQIF--EKYGNTDIEGVDSTNACYGGTAALFNCVNWVESASWDGRYGLVVCT 150
SK+ ++ + + + + E ++ CY TAAL VE D R LV+ +
Sbjct: 85 SKAGAVYVHSLLGIQPFARS-FEMKEAX--CYSATAALNYAKLHVEKHP-DTRV-LVLAS 139
Query: 151 DSAVYAEG-PARPTGGAAAVAMLIGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVD 209
D A Y G P T GA ++AML+ D I + DF++PN + P V+
Sbjct: 140 DIAKYGIGTPGESTQGAGSIAMLVKKDPRILILHDETLAQTRDIMDFWRPNYTTT-PYVN 198
Query: 210 GKLSQTCYLMALDSCYKYFCQKFEKLEGRQFSMLDVDYFVFHSPYNKLVQKSFARLF 266
G S YL L + + + ++F+ S+ D F FH P+ KL K F ++
Sbjct: 199 GMYSTKQYLDMLKTTWAEYQKRFD------VSLTDFAAFCFHLPFPKLALKGFNKIM 249
>pdb|2QIP|A Chain A, Crystal Structure Of A Protein Of Unknown Function Vpa0982
From Vibrio Parahaemolyticus Rimd 2210633
Length = 165
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 24 LQEALEVHDGVSKGKYTVGLGQDCMAFCSEVEDVISMS-----LTVVTSLLEKYKIDPTQ 78
L+ ++ DG +KG + VG+ D + +V+ VI +S +V + ++Y T
Sbjct: 79 LKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQRYNKKVTV 138
Query: 79 IGRLEVGSETVID 91
G + S+T+ID
Sbjct: 139 YGVPRLTSQTLID 151
>pdb|3H7U|A Chain A, Crystal Structure Of The Plant Stress-Response Enzyme
Akr4c9
Length = 335
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 186 RGSHMSHAYDFYKPNLASEYPVV 208
RGSHM++A F+K N +++P V
Sbjct: 17 RGSHMANAITFFKLNTGAKFPSV 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,568,242
Number of Sequences: 62578
Number of extensions: 347701
Number of successful extensions: 769
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 20
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)