BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023576
(280 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZQ19|RFA2A_ARATH Replication protein A 32 kDa subunit A OS=Arabidopsis thaliana
GN=RPA2A PE=1 SV=2
Length = 279
Score = 308 bits (790), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 155/280 (55%), Positives = 211/280 (75%), Gaps = 9/280 (3%)
Query: 1 MFSSSQFDASNAFSGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDK 60
MFSSSQF+ ++ FSGGGFM SQP Q+ + SSTA++RD QGLVPVTVK I+E S +K
Sbjct: 1 MFSSSQFEPNSGFSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQSSGEK 60
Query: 61 SNFMINGLEITNVTLVGLVYNKEE-RASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQ 119
S +ING+ +TNV+LVGLV +K+E + ++V FTLDDGTGR+ CKRW SE FD REME+++
Sbjct: 61 SGLVINGISLTNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVR 120
Query: 120 DGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKSQVQGFPSSQ 179
DG YVRL G+LK+FQGK Q++ FSVRP+ +F+EVT HYIECI+F+ QNS+SQ Q Q
Sbjct: 121 DGTYVRLSGHLKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQ-----Q 175
Query: 180 PQMVDSSLNTSARTGLSGYQTAPTN--LSSQFG-VDGLKDCDQMILDYLQQPSSSERERG 236
V S+NT+ + G + Q N +SSQ +G K+ D MILDYL+QP+ + R++G
Sbjct: 176 VGDVTQSVNTTFQGGSNTNQATLLNPVVSSQNNDGNGRKNLDDMILDYLKQPACTARQQG 235
Query: 237 VHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYK 276
+H++E+++QLKIP+ K+ + SLE +GLIYSTIDE+H+K
Sbjct: 236 IHIDEIAQQLKIPKNKLEGVVQSLEGDGLIYSTIDEYHFK 275
>sp|Q8LFJ8|RFA2B_ARATH Replication protein A 32 kDa subunit B OS=Arabidopsis thaliana
GN=RPA2B PE=2 SV=1
Length = 278
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/275 (43%), Positives = 176/275 (64%), Gaps = 12/275 (4%)
Query: 7 FDASNAFSGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMIN 66
FD + AF+GGGFMPSQ A SS+ ++RD + L+P+T+K +S AS +G+ SNF I+
Sbjct: 6 FDGNAAFAGGGFMPSQATTQAHESSSSLKNRDVRTLLPLTLKQLSSASTTGE--SNFSID 63
Query: 67 GLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRL 126
G++I V +VG + E R + V+F +DDGTG V C RW +T EMEA++ GMYVRL
Sbjct: 64 GVDIKTVVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGMYVRL 123
Query: 127 IGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSK----SQVQGFPSSQPQM 182
G+LK FQGK+ + FSVRPVT+F+E+ H+ EC+Y H+ N+K S Q + +PQM
Sbjct: 124 HGHLKIFQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDTATPRPQM 183
Query: 183 VDSSLNTSARTGLSGYQTAPTN-LSSQFGVDGLKDCDQMILDYLQQPSSSERERGVHVNE 241
S++ T A+ YQT P+N +QF D + Q +L+YL QP E GVH +
Sbjct: 184 PYSTMPTPAKP----YQTGPSNQFPNQFN-DSMHGVKQTVLNYLNQPMHIVSEAGVHCDI 238
Query: 242 LSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYK 276
++ +L+IP ++ +++ L N+G IYST+DE +K
Sbjct: 239 IARELRIPLLQVKEALEQLSNDGCIYSTLDETCFK 273
>sp|Q63528|RFA2_RAT Replication protein A 32 kDa subunit OS=Rattus norvegicus GN=Rpa2
PE=2 SV=2
Length = 270
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 133/265 (50%), Gaps = 24/265 (9%)
Query: 14 SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNV 73
S GGF P Q+ +R+R +Q +VP T+ + A+ + + F I +EI+ V
Sbjct: 23 SPGGFGSPTPSQA----EKKSRAR-AQHIVPCTISQLLSATLTDE---VFKIGDVEISQV 74
Query: 74 TLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKS 132
T+VG++ + E+ +++ + +DD T + ++W + E + YV++ G+L+S
Sbjct: 75 TIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSGENTVVPPETYVKVAGHLRS 134
Query: 133 FQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKSQVQGFPSSQPQMVDSSLNTSAR 192
FQ KK +VAF + P+ + +E T H +E + HL SK+ Q +P M + +
Sbjct: 135 FQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHLMLSKANSQA-SVGRPSMSNPGMGEPGN 193
Query: 193 TGLSGYQTAPTNLSSQFGVDGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLK-IPQK 251
SG P N GL +L+ ++ + R G++ +L QL+ +P
Sbjct: 194 --FSGNNFMPAN--------GLTVVQNQVLNLIK---ACPRPEGLNFQDLRSQLQHMPVA 240
Query: 252 KIMDSIASLENEGLIYSTIDEFHYK 276
I ++ L NEG IYST+D+ H+K
Sbjct: 241 SIKQAVDFLCNEGHIYSTVDDDHFK 265
>sp|P15927|RFA2_HUMAN Replication protein A 32 kDa subunit OS=Homo sapiens GN=RPA2 PE=1
SV=1
Length = 270
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 131/269 (48%), Gaps = 32/269 (11%)
Query: 14 SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNV 73
S GGF P Q+ +R+R +Q +VP T+ + A+ + F I +EI+ V
Sbjct: 23 SPGGFGSPAPSQA----EKKSRAR-AQHIVPCTISQLLSATLVDEV---FRIGNVEISQV 74
Query: 74 TLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKS 132
T+VG++ + E+ +++ + +DD T + ++W + E + YV++ G+L+S
Sbjct: 75 TIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRS 134
Query: 133 FQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKSQVQG----FPSSQPQMVDSSLN 188
FQ KK +VAF + P+ + +E T H +E I H+ SK+ Q P S P M ++
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAPISNPGMSEAG-- 192
Query: 189 TSARTGLSGYQTAPTNLSSQFGVDGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLK- 247
G P N GL +L+ ++ + R G++ +L QLK
Sbjct: 193 -----NFGGNSFMPAN--------GLTVAQNQVLNLIK---ACPRPEGLNFQDLKNQLKH 236
Query: 248 IPQKKIMDSIASLENEGLIYSTIDEFHYK 276
+ I ++ L NEG IYST+D+ H+K
Sbjct: 237 MSVSSIKQAVDFLSNEGHIYSTVDDDHFK 265
>sp|Q62193|RFA2_MOUSE Replication protein A 32 kDa subunit OS=Mus musculus GN=Rpa2 PE=1
SV=1
Length = 270
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 139/279 (49%), Gaps = 26/279 (9%)
Query: 2 FSSSQFDASNAF--SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDD 59
F+SS + + S GGF P Q+ +R R +Q +VP T+ + A+ + +
Sbjct: 9 FTSSTYGGRGGYTQSPGGFGSPTPSQA----EKKSRVR-AQHIVPCTISQLLSATLTDE- 62
Query: 60 KSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAI 118
F I +EI+ VT+VG++ + E+ +++ + +DD T + ++W + E +
Sbjct: 63 --VFRIGDVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAPPMDVRQWVDTDDASGENAVV 120
Query: 119 QDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKSQVQGFPSS 178
YV++ G+L+SFQ KK +VAF + P+ + +E T H +E + H+ SK Q +
Sbjct: 121 PPETYVKVAGHLRSFQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHMMLSKPNSQA-SAG 179
Query: 179 QPQMVDSSLNTSARTGLSGYQTAPTNLSSQFGVDGLKDCDQMILDYLQQPSSSERERGVH 238
+P M + ++ S SG P N L +L+ ++ + R G++
Sbjct: 180 RPSMSNPGMSESF--NFSGNNFMPANR--------LTVVQNQVLNLIK---ACPRPEGLN 226
Query: 239 VNELSEQLK-IPQKKIMDSIASLENEGLIYSTIDEFHYK 276
+L QL+ +P I ++ L NEG IYST+D+ H+K
Sbjct: 227 FQDLRSQLQHMPVPSIKQAVDFLCNEGHIYSTVDDDHFK 265
>sp|Q92373|RFA2_SCHPO Replication factor A protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ssb2 PE=1 SV=1
Length = 279
Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 136/282 (48%), Gaps = 35/282 (12%)
Query: 8 DASNAFS---GGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFM 64
D ++AFS GGG ++ QS+ PS + L PVT+K I AS D + F
Sbjct: 14 DFNSAFSPGMGGGAGFNEYDQSSQ-PSVDRQQGAGNKLRPVTIKQILNASQVHAD-AEFK 71
Query: 65 INGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYV 124
I+G+E+ VT VG++ N + ++ + ++DGTG + + W E D + + YV
Sbjct: 72 IDGVEVGQVTFVGVLRNIHAQTTNTTYQIEDGTGMIEVRHW--EHIDA--LSELATDTYV 127
Query: 125 RLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKSQVQGFPSSQPQMVD 184
R+ GN+K F GK I + +R + + +EV H++E I HL ++ ++ P
Sbjct: 128 RVYGNIKIFSGKIYIASQYIRTIKDHNEVHFHFLEAIAVHLHFTQKANAVNGANAP---- 183
Query: 185 SSLNTSARTGLSGYQTAPTNLSSQFGVDGLKDCDQMILDYLQQP----------SSSERE 234
TS G + N+SS + L +Q + +Y P S+ E
Sbjct: 184 -GYGTSNALGYN-------NISSNGAANSL---EQKLAEYSLTPAQMTVMQAIHSAPETN 232
Query: 235 RGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYK 276
GVHV +L++ + P + L+ EG+IY+TIDE H+K
Sbjct: 233 EGVHVRQLAQSVG-PGIDLTAVTDFLQQEGIIYTTIDENHFK 273
>sp|Q5RC43|RFA2_PONAB Replication protein A 32 kDa subunit OS=Pongo abelii GN=RPA2 PE=2
SV=1
Length = 270
Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 131/269 (48%), Gaps = 32/269 (11%)
Query: 14 SGGGFMPSQPPQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNV 73
S GGF P Q+ +R+R +Q +VP T+ + A+ + F I +EI+ V
Sbjct: 23 SPGGFGSPAPSQA----EKKSRAR-AQHIVPCTISQLLSATLVDEV---FRIGNVEISQV 74
Query: 74 TLVGLVYNKEERASDVNFTLDDGTGRVV-CKRWASEVFDTREMEAIQDGMYVRLIGNLKS 132
T+VG++ + E+ +++ + +DD T + ++W + E + YV++ G+L+S
Sbjct: 75 TIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDASSENTVVPPETYVKVAGHLRS 134
Query: 133 FQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKSQVQG----FPSSQPQMVDSSLN 188
FQ KK +VAF + P+ + +E T H +E I H+ SK+ Q P S P M ++
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAPISNPGMSEAG-- 192
Query: 189 TSARTGLSGYQTAPTNLSSQFGVDGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLK- 247
G P N GL +L+ ++ + R G++ +L QLK
Sbjct: 193 -----NFGGNSFMPAN--------GLTVAQNQVLNLIK---ACPRPEGLNFQDLKNQLKH 236
Query: 248 IPQKKIMDSIASLENEGLIYSTIDEFHYK 276
+ + ++ L NEG IYST+D+ H+K
Sbjct: 237 MSVSSVKQAMDFLSNEGHIYSTVDDDHFK 265
>sp|P26754|RFA2_YEAST Replication factor A protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFA2 PE=1 SV=1
Length = 273
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 136/292 (46%), Gaps = 39/292 (13%)
Query: 1 MFSSSQFDASNAFSGGGFMPSQP-PQSADYPSSTARSRDSQGLVPVTVKMISEASHSGDD 59
M + ++ ++ +GGGF S+ P S + ++T + L PVT+K I E+ D
Sbjct: 1 MATYQPYNEYSSVTGGGFENSESRPGSGESETNTRVNT----LTPVTIKQILESKQDIQD 56
Query: 60 KSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFD-------- 111
F+ + E+ +V VG+V N + +++ T++DGTG++ ++W+ + D
Sbjct: 57 GP-FVSHNQELHHVCFVGVVRNITDHTANIFLTIEDGTGQIEVRKWSEDANDLAAGNDDS 115
Query: 112 ------TREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHL 165
++ + + G YV++ G LK F GKK I ++P+ +F+EV H++E I H
Sbjct: 116 SGKGYGSQVAQQFEIGGYVKVFGALKEFGGKKNIQYAVIKPIDSFNEVLTHHLEVIKCHS 175
Query: 166 QNSKSQVQGFPSSQPQMVDSSLNTSARTGLSGYQTAPTNLSSQFGVDGLKDCDQMILDYL 225
S Q S+ S G S + + SS G L Q IL++
Sbjct: 176 IASGMMKQPLESA-----------SNNNGQSLFVKDDNDTSS--GSSPL----QRILEFC 218
Query: 226 QQPSSSERER--GVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHY 275
++ + V + +S+ L + + + + +L ++G IY T D+ ++
Sbjct: 219 KKQCEGKDANSFAVPIPLISQSLNLDETTVRNCCTTLTDQGFIYPTFDDNNF 270
>sp|Q13156|RFA4_HUMAN Replication protein A 30 kDa subunit OS=Homo sapiens GN=RPA4 PE=1
SV=2
Length = 261
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 29/221 (13%)
Query: 63 FMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGM 122
F + G+ ++ V++VG++ E+ ++ + + +DD T + + R +++ + G+
Sbjct: 64 FKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKVKQVTPLSVGV 123
Query: 123 YVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKSQ----VQGFPSS 178
YV++ G LK G K + + + + +E T H +E + H+ K++ V+ P S
Sbjct: 124 YVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTVESVPVS 183
Query: 179 QPQMVDSSLNTSARTGLSGYQTAPTNLSSQFGVDGLKDCDQMILDYLQQPSSSERERGVH 238
++ D+ N + ++D + L+ + G
Sbjct: 184 PSEVNDAGDNDESHRNF------------------IQD------EVLRLIHECPHQEGKS 219
Query: 239 VNELSEQL-KIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278
++EL QL + K I ++I L EG IY T+D H+K A
Sbjct: 220 IHELRAQLCDLSVKAIKEAIDYLTVEGHIYPTVDREHFKSA 260
>sp|Q9LMK5|STN1_ARATH CST complex subunit STN1 OS=Arabidopsis thaliana GN=STN1 PE=1 SV=1
Length = 160
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 63/143 (44%), Gaps = 19/143 (13%)
Query: 50 ISEASHSGDDKSNF-MINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASE 108
I + S + ++F ++ G ++ V +VG + +++ + F +DDGTG V C W ++
Sbjct: 17 IQRLTQSPTESNSFSLLGGACVSRVEIVGTIVSRDLTPKFLKFGVDDGTGCVTCVMWLNQ 76
Query: 109 VFDT------------------REMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNF 150
+ + ++ I+ G R+ G + S++G QI A +
Sbjct: 77 LTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRGVMQITANVAVAERDP 136
Query: 151 DEVTCHYIECIYFHLQNSKSQVQ 173
+ H++EC+ + ++Q
Sbjct: 137 NAEILHWLECLKLGQSCYRVRIQ 159
>sp|Q23697|RFA2_CRIFA Replication protein A 28 kDa subunit OS=Crithidia fasciculata
GN=RPA2 PE=3 SV=1
Length = 258
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 16/133 (12%)
Query: 44 PVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEE----------RASDVNFTL 93
P+T+K + EA G E+T T+VG V E A + +
Sbjct: 32 PLTIKQMLEAQSVGGGVMVVDGR--EVTQATVVGRVVGYENANMASGGGAITAKHFGYRI 89
Query: 94 DDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEV 153
D TG +V ++W + R E I +VR G + +Q + IV +V + + +E+
Sbjct: 90 TDNTGMIVVRQW---IDADRAQEPIPLNTHVRASGTVNVWQ-QSPIVTGTVVSMADSNEM 145
Query: 154 TCHYIECIYFHLQ 166
H ++ I HL+
Sbjct: 146 NYHMLDAILTHLR 158
>sp|Q1JEV4|DPO3_STRPD DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M2
(strain MGAS10270) GN=polC PE=3 SV=1
Length = 1465
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 64/135 (47%), Gaps = 14/135 (10%)
Query: 69 EITNVTLVGLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123
E + G+V++ E + + +NF + D T ++WA + + R+ + I G +
Sbjct: 240 EENRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAW 299
Query: 124 VRLIGNLKS--FQGKKQIVAFSVRPVTNFD--EVTCHYIECIYFHLQNSKSQVQGFPSSQ 179
+R+ GN+++ F + V+ + + D ++ + + FH + S + P+
Sbjct: 300 LRVQGNIETNPFTKSLTMNVQQVKEIVHHDRKDLMPEGQKRVEFHAHTNMSTMDALPT-- 357
Query: 180 PQMVDSSLNTSARTG 194
V+S ++T+A+ G
Sbjct: 358 ---VESLIDTAAKWG 369
>sp|Q08DB2|STN1_BOVIN CST complex subunit STN1 OS=Bos taurus GN=OBFC1 PE=2 SV=1
Length = 370
Score = 38.9 bits (89), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 26/121 (21%)
Query: 47 VKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRW- 105
++ I + SG + F NG I V ++G V E+ + ++ +DD TG + C W
Sbjct: 31 IRDILDLKESGQVQGVFFYNGHPIKQVDILGTVIGVREKDAFYSYGVDDSTGVINCICWK 90
Query: 106 ---------------ASEVFDTREMEAIQD----------GMYVRLIGNLKSFQGKKQIV 140
A E+ T +++ +Q+ G +R+ G+++ F+G+++I
Sbjct: 91 RLNNTKSSSATATPSARELSLTSQLKKLQETIAQRAKLEIGDIIRVRGHIRMFRGEREIH 150
Query: 141 A 141
A
Sbjct: 151 A 151
>sp|Q8NZB5|DPO3_STRP8 DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=polC PE=3 SV=1
Length = 1465
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 69 EITNVTLVGLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123
E + G+V++ E + + +NF + D T ++WA + + R+ + I G +
Sbjct: 240 EENRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAW 299
Query: 124 VRLIGNLKS--FQGKKQIVAFSVRPVTNFD--EVTCHYIECIYFHLQNSKSQVQGFPSSQ 179
+R+ GN+++ F + V+ + + D ++ + + H + S + P+
Sbjct: 300 LRVQGNIETNPFTKSLTMNVQQVKEIVHHDRKDLMPEGQKRVELHAHTNMSTMDALPT-- 357
Query: 180 PQMVDSSLNTSARTG 194
V+S ++T+A+ G
Sbjct: 358 ---VESLIDTAAKWG 369
>sp|Q1JJW3|DPO3_STRPC DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M12
(strain MGAS9429) GN=polC PE=3 SV=1
Length = 1465
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 69 EITNVTLVGLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123
E + G+V++ E + + +NF + D T ++WA + + R+ + I G +
Sbjct: 240 EENRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAW 299
Query: 124 VRLIGNLKS--FQGKKQIVAFSVRPVTNFD--EVTCHYIECIYFHLQNSKSQVQGFPSSQ 179
+R+ GN+++ F + V+ + + D ++ + + H + S + P+
Sbjct: 300 LRVQGNIETNPFTKSLTMNVQQVKEIVHHDRKDLMPEGQKRVELHAHTNMSTMDALPT-- 357
Query: 180 PQMVDSSLNTSARTG 194
V+S ++T+A+ G
Sbjct: 358 ---VESLIDTAAKWG 369
>sp|Q1J9R4|DPO3_STRPB DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M12
(strain MGAS2096) GN=polC PE=3 SV=1
Length = 1465
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 69 EITNVTLVGLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123
E + G+V++ E + + +NF + D T ++WA + + R+ + I G +
Sbjct: 240 EENRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAW 299
Query: 124 VRLIGNLKS--FQGKKQIVAFSVRPVTNFD--EVTCHYIECIYFHLQNSKSQVQGFPSSQ 179
+R+ GN+++ F + V+ + + D ++ + + H + S + P+
Sbjct: 300 LRVQGNIETNPFTKSLTMNVQQVKEIVHHDRKDLMPEGQKRVELHAHTNMSTMDALPT-- 357
Query: 180 PQMVDSSLNTSARTG 194
V+S ++T+A+ G
Sbjct: 358 ---VESLIDTAAKWG 369
>sp|Q48R90|DPO3_STRPM DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M28
(strain MGAS6180) GN=polC PE=3 SV=1
Length = 1465
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 69 EITNVTLVGLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123
E + G+V++ E + + +NF + D T ++WA + + R+ + I G +
Sbjct: 240 EENRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAW 299
Query: 124 VRLIGNLKS--FQGKKQIVAFSVRPVTNFD--EVTCHYIECIYFHLQNSKSQVQGFPSSQ 179
+R+ GN+++ F + V+ + + D ++ + + H + S + P+
Sbjct: 300 LRVQGNIETNPFTKSLTMNVQQVKEIVHHDRKDLMPEGQKRVELHAHTNMSTMDALPT-- 357
Query: 180 PQMVDSSLNTSARTG 194
V+S ++T+A+ G
Sbjct: 358 ---VESLIDTAAKWG 369
>sp|P63984|DPO3_STRA5 DNA polymerase III PolC-type OS=Streptococcus agalactiae serotype V
(strain ATCC BAA-611 / 2603 V/R) GN=polC PE=3 SV=1
Length = 1468
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 64/141 (45%), Gaps = 26/141 (18%)
Query: 69 EITNVTLVGLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123
E + G+V++ E + + +NF + D T ++WA + + ++ + I G +
Sbjct: 243 EENRIVFEGMVFSVERKTTRTGRHIINFKMTDYTSSFAMQKWAKDDEELKKYDMISKGSW 302
Query: 124 VRLIGNLK----------SFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKSQVQ 173
+R+ GN++ + Q K+IV + + D+ + + FH + S +
Sbjct: 303 LRVRGNIENNNFTKSLTMNVQDIKEIVHHERKDLMPADQ------KRVEFHAHTNMSTMD 356
Query: 174 GFPSSQPQMVDSSLNTSARTG 194
P+ V+S ++T+A+ G
Sbjct: 357 ALPT-----VESLIDTAAKWG 372
>sp|P63983|DPO3_STRA3 DNA polymerase III PolC-type OS=Streptococcus agalactiae serotype
III (strain NEM316) GN=polC PE=3 SV=1
Length = 1468
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 64/141 (45%), Gaps = 26/141 (18%)
Query: 69 EITNVTLVGLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123
E + G+V++ E + + +NF + D T ++WA + + ++ + I G +
Sbjct: 243 EENRIVFEGMVFSVERKTTRTGRHIINFKMTDYTSSFAMQKWAKDDEELKKYDMISKGSW 302
Query: 124 VRLIGNLK----------SFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKSQVQ 173
+R+ GN++ + Q K+IV + + D+ + + FH + S +
Sbjct: 303 LRVRGNIENNNFTKSLTMNVQDIKEIVHHERKDLMPADQ------KRVEFHAHTNMSTMD 356
Query: 174 GFPSSQPQMVDSSLNTSARTG 194
P+ V+S ++T+A+ G
Sbjct: 357 ALPT-----VESLIDTAAKWG 372
>sp|Q8K2X3|STN1_MOUSE CST complex subunit STN1 OS=Mus musculus GN=Obfc1 PE=1 SV=2
Length = 378
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 27/122 (22%)
Query: 47 VKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRW- 105
+K I E S + NG I V ++G V + +ER + ++ +DD TG + C W
Sbjct: 38 IKDILEMKESQQVPGTYFYNGHPIRRVDIMGAVISVKERETFYSYGVDDATGVINCVCWK 97
Query: 106 ----------------ASEVFDTREMEAIQD----------GMYVRLIGNLKSFQGKKQI 139
A E+ T +++ +Q+ G +R+ G+++ F+ +++I
Sbjct: 98 KLSNAESSSDPAILSTARELSMTSQLKKLQETIEQKTRIGIGDIIRVRGSVRMFREEREI 157
Query: 140 VA 141
A
Sbjct: 158 CA 159
>sp|Q9KDN6|YHAM_BACHD 3'-5' exoribonuclease YhaM OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=yhaM PE=3 SV=1
Length = 320
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 89 VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVT 148
+ L D TG + K W D G V + G L ++G++Q+ S+RP T
Sbjct: 35 LTLILSDHTGEIEAKLWGCSPEDE---ATFVSGAIVHISGQLSEYRGRQQLKIGSIRPTT 91
Query: 149 NFDEV 153
D+V
Sbjct: 92 AMDQV 96
>sp|A0AKX3|YHAM_LISW6 3'-5' exoribonuclease YhaM OS=Listeria welshimeri serovar 6b
(strain ATCC 35897 / DSM 20650 / SLCC5334) GN=yhaM PE=3
SV=1
Length = 313
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 89 VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGM--YVRLIGNLKSFQGKKQIVAFSVRP 146
++ L D +G + K W D +E + + G+ V LIG++++++G+KQ+ +R
Sbjct: 35 LSLVLQDKSGELEAKLW-----DVKESDEVNYGVQQIVHLIGDIQNYRGRKQLKIRQIRQ 89
Query: 147 VTNFDEVTC-HYIECIYFHLQNSKSQVQGFPSSQPQMVDSSLNTSARTGLSGYQ 199
T D V ++E + + ++ + +M +++L R L YQ
Sbjct: 90 ATPLDGVNASEFMETAPINKEEMADEITQYIF---EMKNANLQRITRALLKKYQ 140
>sp|P0DA77|DPO3_STRPQ DNA polymerase III polC-type OS=Streptococcus pyogenes serotype M3
(strain SSI-1) GN=polC PE=3 SV=1
Length = 1465
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 69 EITNVTLVGLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123
E + G+V++ E + + +NF + D T ++WA + + R+ + I G++
Sbjct: 240 EENRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGVW 299
Query: 124 VRLIGNLKS 132
+R+ GN+++
Sbjct: 300 LRVQGNIET 308
>sp|P0DA76|DPO3_STRP3 DNA polymerase III polC-type OS=Streptococcus pyogenes serotype M3
(strain ATCC BAA-595 / MGAS315) GN=polC PE=3 SV=1
Length = 1465
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 69 EITNVTLVGLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123
E + G+V++ E + + +NF + D T ++WA + + R+ + I G++
Sbjct: 240 EENRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGVW 299
Query: 124 VRLIGNLKS 132
+R+ GN+++
Sbjct: 300 LRVQGNIET 308
>sp|D2GXY4|STN1_AILME CST complex subunit STN1 OS=Ailuropoda melanoleuca GN=OBFC1 PE=3
SV=2
Length = 367
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 63 FMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRW 105
F NG I V ++G V + E+ + ++ +DDGTG + C W
Sbjct: 46 FFYNGHPIKQVEILGTVIGRREKDAFYSYGVDDGTGVINCICW 88
>sp|Q5X9U8|DPO3_STRP6 DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M6
(strain ATCC BAA-946 / MGAS10394) GN=polC PE=3 SV=1
Length = 1465
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/135 (19%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 69 EITNVTLVGLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123
E + G+V++ E + + +NF + D T ++WA + + R+ + I G +
Sbjct: 240 EENRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAW 299
Query: 124 VRLIGNLKS--FQGKKQIVAFSVRPVTNFD--EVTCHYIECIYFHLQNSKSQVQGFPSSQ 179
+R+ GN+++ F + V+ + + + ++ + + FH + S + P+
Sbjct: 300 LRVQGNIETNPFTKSLTMNVQQVKEIVHHERKDLMPEGQKRVEFHAHTNMSTMDALPT-- 357
Query: 180 PQMVDSSLNTSARTG 194
V+S ++ +A+ G
Sbjct: 358 ---VESLIDMAAKWG 369
>sp|A2RGI3|DPO3_STRPG DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M5
(strain Manfredo) GN=polC PE=3 SV=1
Length = 1465
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 60/139 (43%), Gaps = 22/139 (15%)
Query: 69 EITNVTLVGLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123
E + G+V++ E + + +NF + D T ++WA + + R+ + I G +
Sbjct: 240 EENRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAW 299
Query: 124 VRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIY--------FHLQNSKSQVQGF 175
+R+ GN+++ K + V E+ H + + H + S +
Sbjct: 300 LRVQGNIETNPFTKSLTM----NVQQVKEIVHHERKDLMPEGQKRVELHAHTNMSTMDAL 355
Query: 176 PSSQPQMVDSSLNTSARTG 194
P+ V+S ++T+A+ G
Sbjct: 356 PT-----VESLIDTAAKWG 369
>sp|P0C0B7|DPO3_STRPY DNA polymerase III PolC-type OS=Streptococcus pyogenes GN=polC PE=3
SV=1
Length = 1465
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 69 EITNVTLVGLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123
E + G+V++ E + + +NF + D T ++WA + + R+ + I G +
Sbjct: 240 EENRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAW 299
Query: 124 VRLIGNLKS 132
+R+ GN+++
Sbjct: 300 LRVQGNIET 308
>sp|Q1J4M0|DPO3_STRPF DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M4
(strain MGAS10750) GN=polC PE=3 SV=1
Length = 1465
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 69 EITNVTLVGLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123
E + G+V++ E + + +NF + D T ++WA + + R+ + I G +
Sbjct: 240 EENRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAW 299
Query: 124 VRLIGNLKS 132
+R+ GN+++
Sbjct: 300 LRVQGNIET 308
>sp|P0C0B8|DPO3_STRP1 DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M1
GN=polC PE=3 SV=1
Length = 1465
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 69 EITNVTLVGLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123
E + G+V++ E + + +NF + D T ++WA + + R+ + I G +
Sbjct: 240 EENRIVFEGMVFDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAW 299
Query: 124 VRLIGNLKS 132
+R+ GN+++
Sbjct: 300 LRVQGNIET 308
>sp|Q9SAR0|1A16_ARATH 1-aminocyclopropane-1-carboxylate synthase 6 OS=Arabidopsis
thaliana GN=ACS6 PE=1 SV=2
Length = 495
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 16/118 (13%)
Query: 15 GGGFMPSQPPQSADYPS--STARSRDSQGLVPVTVKMIS---------EASHSGDDKSNF 63
G GF+ P YP R R LVPVT + EA++ KSN
Sbjct: 146 GDGFLVPTPY----YPGFDRDLRWRTGVNLVPVTCHSSNGFKITVEALEAAYENARKSNI 201
Query: 64 MINGLEITNVT-LVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQD 120
+ GL +TN + +G ++E S VNFT D G + + +A+ F E ++ +
Sbjct: 202 PVKGLLVTNPSNPLGTTLDRECLKSLVNFTNDKGIHLIADEIYAATTFGQSEFISVAE 259
>sp|Q8DWE0|DPO3_STRMU DNA polymerase III PolC-type OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=polC PE=3 SV=1
Length = 1465
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 69 EITNVTLVGLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123
E +T GLV++ E + + +NF + D T ++WA + + ++ + I G +
Sbjct: 238 EENRITFEGLVFDVERKTTRTGRHIINFKMTDYTSSFPMQKWAKDDEELKKYDMISKGAW 297
Query: 124 VRLIGNLKS 132
+R+ GN+++
Sbjct: 298 LRVRGNIEN 306
>sp|Q9H668|STN1_HUMAN CST complex subunit STN1 OS=Homo sapiens GN=OBFC1 PE=1 SV=2
Length = 368
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 24/103 (23%)
Query: 63 FMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRW--------------ASE 108
F+ NG I V ++G V ER + ++ +DD TG + C W A E
Sbjct: 47 FLYNGHPIKQVDVLGTVIGVRERDAFYSYGVDDSTGVINCICWKKLNTESVSAAPSAARE 106
Query: 109 VFDTREMEAIQD----------GMYVRLIGNLKSFQGKKQIVA 141
+ T +++ +Q+ G +R+ G++++++ +++I A
Sbjct: 107 LSLTSQLKKLQETIEQKTKIEIGDTIRVRGSIRTYREEREIHA 149
>sp|Q4R804|STN1_MACFA CST complex subunit STN1 OS=Macaca fascicularis GN=OBFC1 PE=2 SV=1
Length = 368
Score = 34.7 bits (78), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 24/103 (23%)
Query: 63 FMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRW--------------ASE 108
F+ NG I V ++G V ER + ++ +DD TG + C W A E
Sbjct: 47 FLYNGHPIKQVDVLGTVVGVRERDAFYSYGVDDSTGVINCICWKKLNTESVSAAPSAARE 106
Query: 109 VFDTREMEAIQD----------GMYVRLIGNLKSFQGKKQIVA 141
+ T +++ +Q+ G +R+ G++++++ +++I A
Sbjct: 107 LSLTSQLKKLQETIERRTKIEIGDTIRVRGSIRTYREEREIHA 149
>sp|Q929F3|YHAM_LISIN 3'-5' exoribonuclease YhaM OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=yhaM PE=3 SV=1
Length = 313
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 89 VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGM--YVRLIGNLKSFQGKKQIVAFSVRP 146
++ L D +G + K W D +E + I G+ V L+G++++++G+KQ+ +R
Sbjct: 35 LSLVLQDKSGELEAKLW-----DVKESDEINYGVQQIVHLMGDIQNYRGRKQLKIRQIRQ 89
Query: 147 VTNFDEVTC 155
+ D V+
Sbjct: 90 ASPLDGVSA 98
>sp|Q02RT0|EX7L_PSEAB Exodeoxyribonuclease 7 large subunit OS=Pseudomonas aeruginosa
(strain UCBPP-PA14) GN=xseA PE=3 SV=1
Length = 459
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 89 VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKK--QIVAFSVRP 146
V FTL D ++ C + R+ A++DG+ V++ G + F+G+ Q++A +V P
Sbjct: 53 VYFTLKDSNAQIRCALFRQNALRVRQ--ALRDGLAVKVRGKISLFEGRGDYQLIADTVEP 110
>sp|Q9HXL8|EX7L_PSEAE Exodeoxyribonuclease 7 large subunit OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=xseA PE=3 SV=1
Length = 459
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 89 VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKK--QIVAFSVRP 146
V FTL D ++ C + R+ A++DG+ V++ G + F+G+ Q++A +V P
Sbjct: 53 VYFTLKDSNAQIRCALFRQNALRVRQ--ALRDGLAVKVRGKISLFEGRGDYQLIADTVEP 110
>sp|B7UXJ1|EX7L_PSEA8 Exodeoxyribonuclease 7 large subunit OS=Pseudomonas aeruginosa
(strain LESB58) GN=xseA PE=3 SV=1
Length = 459
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 89 VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKK--QIVAFSVRP 146
V FTL D ++ C + R+ A++DG+ V++ G + F+G+ Q++A +V P
Sbjct: 53 VYFTLKDSNAQIRCALFRQNALRVRQ--ALRDGLAVKVRGKISLFEGRGDYQLIADTVEP 110
>sp|A4VXT1|DPO3_STRSY DNA polymerase III PolC-type OS=Streptococcus suis (strain 05ZYH33)
GN=polC PE=3 SV=1
Length = 1463
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 69 EITNVTLVGLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123
E + GLV+ E++ + +NF + D T ++WA + ++ + ++ G +
Sbjct: 238 EENRIVFEGLVFEVEQKTTKTGRVIINFKMTDYTSSFTLQKWAKNEEEAQKFDMVKKGNW 297
Query: 124 VRLIGNLKS 132
+R+ GN+++
Sbjct: 298 LRVRGNVET 306
>sp|A4W428|DPO3_STRS2 DNA polymerase III PolC-type OS=Streptococcus suis (strain 98HAH33)
GN=polC PE=3 SV=1
Length = 1463
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 69 EITNVTLVGLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123
E + GLV+ E++ + +NF + D T ++WA + ++ + ++ G +
Sbjct: 238 EENRIVFEGLVFEVEQKTTKTGRVIINFKMTDYTSSFTLQKWAKNEEEAQKFDMVKKGNW 297
Query: 124 VRLIGNLKS 132
+R+ GN+++
Sbjct: 298 LRVRGNVET 306
>sp|Q8Y556|YHAM_LISMO 3'-5' exoribonuclease YhaM OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=yhaM PE=3 SV=1
Length = 313
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 89 VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGM--YVRLIGNLKSFQGKKQIVAFSVRP 146
++ L D +G + K W D +E + G+ V L+G++++++G+KQ+ +R
Sbjct: 35 LSLVLQDKSGELEAKLW-----DVKESDEANYGVQQIVHLMGDIQNYRGRKQLKIRQIRQ 89
Query: 147 VTNFDEVTC-HYIECIYFHLQNSKSQVQGFPSSQPQMVDSSLNTSARTGLSGYQ 199
T D V+ ++E + + ++ + +M +++L R L YQ
Sbjct: 90 ATALDGVSASEFMETAPINKEEMADEITQYIF---EMKNANLQRITRALLKKYQ 140
>sp|Q71XE5|YHAM_LISMF 3'-5' exoribonuclease YhaM OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=yhaM PE=3 SV=1
Length = 313
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 89 VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGM--YVRLIGNLKSFQGKKQIVAFSVRP 146
++ L D +G + K W D +E + G+ V L+G++++++G+KQ+ +R
Sbjct: 35 LSLVLQDKSGELEAKLW-----DVKESDEANYGVQQIVHLMGDIQNYRGRKQLKIRQIRQ 89
Query: 147 VTNFDEVTC-HYIECIYFHLQNSKSQVQGFPSSQPQMVDSSLNTSARTGLSGYQ 199
T D V+ ++E + + ++ + +M +++L R L YQ
Sbjct: 90 ATALDGVSASEFMETAPINKEEMADEITQYIF---EMKNANLQRITRALLKKYQ 140
>sp|C1KXH5|YHAM_LISMC 3'-5' exoribonuclease YhaM OS=Listeria monocytogenes serotype 4b
(strain CLIP80459) GN=yhaM PE=3 SV=1
Length = 313
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 89 VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGM--YVRLIGNLKSFQGKKQIVAFSVRP 146
++ L D +G + K W D +E + G+ V L+G++++++G+KQ+ +R
Sbjct: 35 LSLVLQDKSGELEAKLW-----DVKESDEANYGVQQIVHLMGDIQNYRGRKQLKIRQIRQ 89
Query: 147 VTNFDEVTC-HYIECIYFHLQNSKSQVQGFPSSQPQMVDSSLNTSARTGLSGYQ 199
T D V+ ++E + + ++ + +M +++L R L YQ
Sbjct: 90 ATALDGVSASEFMETAPINKEEMADEITQYIF---EMKNANLQRITRALLKKYQ 140
>sp|Q6AYD2|STN1_RAT CST complex subunit STN1 OS=Rattus norvegicus GN=Obfc1 PE=2 SV=1
Length = 408
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 47 VKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRW 105
+K I E S + NG I V ++G V + +ER + ++ +DD TG + C W
Sbjct: 38 IKDILEMKESQQVPGMYFYNGHPIRRVDIMGAVISVKERETFYSYGVDDATGVINCVCW 96
>sp|C3K1K5|EX7L_PSEFS Exodeoxyribonuclease 7 large subunit OS=Pseudomonas fluorescens
(strain SBW25) GN=xseA PE=3 SV=1
Length = 459
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 71 TNVTLVGLVYNKEERAS-DVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGN 129
TN+ + G + N AS V FTL D +V C + + R+ A++DG+ V++ G
Sbjct: 34 TNIWVEGEISNLARPASGHVYFTLKDSGAQVRCALFRNNAARVRQ--ALKDGLAVKVRGK 91
Query: 130 LKSFQGKK--QIVAFSVRP 146
+ F+G+ Q++ +V P
Sbjct: 92 VSLFEGRGDYQLILDTVEP 110
>sp|Q88P26|EX7L_PSEPK Exodeoxyribonuclease 7 large subunit OS=Pseudomonas putida (strain
KT2440) GN=xseA PE=3 SV=1
Length = 459
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 91 FTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKK--QIVAFSVRP 146
FTL D +V C + TR +A++DG+ VR+ G + F+G+ Q++ +V P
Sbjct: 55 FTLKDSGAQVRCALFRQNA--TRVRQALRDGLAVRVRGKVSLFEGRGDYQLILDTVEP 110
>sp|A3CQI2|DPO3_STRSV DNA polymerase III PolC-type OS=Streptococcus sanguinis (strain
SK36) GN=polC PE=3 SV=1
Length = 1462
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/127 (19%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 77 GLVYNKEERASD-----VNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGN-- 129
G+V++ E++ + +NF + D T ++W + ++ + I+ G ++R+ GN
Sbjct: 245 GMVFDLEQKVTRTGRVLLNFKMTDYTSSFSLQKWMKNEEEAKKFDMIKKGAWLRVRGNVE 304
Query: 130 LKSFQGKKQIVAFSVRPVTNFD--EVTCHYIECIYFHLQNSKSQVQGFPSSQPQMVDSSL 187
+ +F + V+ VT+++ ++ + + FH + S + P V+ +
Sbjct: 305 MNNFTRDLTMNVQDVQAVTHYERKDLMPEGQKRVEFHAHTNMSTMDALPE-----VEEIV 359
Query: 188 NTSARTG 194
T+A+ G
Sbjct: 360 ATAAKWG 366
>sp|O67837|RECG_AQUAE ATP-dependent DNA helicase RecG OS=Aquifex aeolicus (strain VF5)
GN=recG PE=3 SV=1
Length = 792
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 95 DGTGRVVCK-RWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVR 145
DGTG + K R+ + F ++A + GM + + G LKSF+G+K +V V+
Sbjct: 173 DGTGYITLKYRYKNPHF---ALKAFRKGMEIVVYGKLKSFKGEKYMVHPEVK 221
>sp|Q3K7C5|EX7L_PSEPF Exodeoxyribonuclease 7 large subunit OS=Pseudomonas fluorescens
(strain Pf0-1) GN=xseA PE=3 SV=1
Length = 459
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 71 TNVTLVGLVYNKEERAS-DVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGN 129
+N+ + G + N AS V FTL D +V C + R+ A++DG+ V++ G
Sbjct: 34 SNIWVEGEISNLARPASGHVYFTLKDSGAQVRCALFRQNAARVRQ--ALKDGLAVKVRGK 91
Query: 130 LKSFQGKK--QIVAFSVRP 146
+ F+G+ Q++ +V P
Sbjct: 92 VSLFEGRGDYQLILDTVEP 110
>sp|Q4K6V9|EX7L_PSEF5 Exodeoxyribonuclease 7 large subunit OS=Pseudomonas fluorescens
(strain Pf-5 / ATCC BAA-477) GN=xseA PE=3 SV=1
Length = 459
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 71 TNVTLVGLVYNKEERAS-DVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGN 129
+N+ + G + N AS V FTL D +V C + R+ A++DG+ V++ G
Sbjct: 34 SNIWVEGEISNLARPASGHVYFTLKDSGAQVRCALFRQNAARVRQ--ALKDGLAVKVRGK 91
Query: 130 LKSFQGKK--QIVAFSVRP 146
+ F+G+ Q++ +V P
Sbjct: 92 VSLFEGRGDYQLILDTVEP 110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,828,429
Number of Sequences: 539616
Number of extensions: 3964219
Number of successful extensions: 11081
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 11028
Number of HSP's gapped (non-prelim): 63
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)