Query 023576
Match_columns 280
No_of_seqs 171 out of 546
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 09:11:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pi2_A Replication protein A 3 100.0 1.7E-61 5.7E-66 435.1 18.0 256 7-279 9-268 (270)
2 3kdf_D Replication protein A 3 100.0 8.2E-40 2.8E-44 264.2 17.7 130 38-170 2-132 (132)
3 4gop_B Putative uncharacterize 100.0 1.7E-39 5.7E-44 263.6 15.4 134 35-169 2-136 (136)
4 3kf6_A Protein STN1; OB fold, 99.9 1.6E-23 5.4E-28 173.0 16.2 130 38-167 14-146 (159)
5 3kf8_A Protein STN1; OB fold; 99.4 1.5E-11 5.3E-16 105.4 15.4 126 40-165 47-204 (220)
6 3mxn_B RECQ-mediated genome in 99.0 1.6E-08 5.4E-13 80.6 15.9 118 39-165 22-147 (150)
7 2k50_A Replication factor A re 98.7 1.4E-08 4.6E-13 79.0 5.5 81 71-154 17-109 (115)
8 1o7i_A SSB, SSO2364, single st 98.7 1.2E-07 4E-12 74.3 9.7 73 72-150 14-99 (119)
9 2kbn_A Conserved protein; nucl 98.7 1E-07 3.5E-12 73.5 9.1 73 71-148 16-92 (109)
10 2k75_A Uncharacterized protein 98.6 9.2E-08 3.2E-12 73.4 8.4 76 72-156 15-102 (106)
11 3e0e_A Replication protein A; 98.3 3.2E-06 1.1E-10 63.7 9.8 72 71-147 12-93 (97)
12 3dm3_A Replication factor A; p 98.0 4.5E-05 1.5E-09 58.2 10.2 72 71-147 15-97 (105)
13 1nnx_A Protein YGIW; structura 97.8 0.00052 1.8E-08 52.5 12.8 83 44-147 25-107 (109)
14 1wjj_A Hypothetical protein F2 97.5 0.00092 3.2E-08 53.8 10.2 55 87-147 62-117 (145)
15 3au7_A TIAS, putative uncharac 97.3 0.001 3.4E-08 62.0 9.5 78 68-149 282-361 (402)
16 1qbj_A Protein (double-strande 97.1 0.00071 2.4E-08 49.0 5.2 52 215-269 9-60 (81)
17 1qgp_A Protein (double strande 97.0 0.00061 2.1E-08 48.8 4.3 52 216-270 14-65 (77)
18 2heo_A Z-DNA binding protein 1 97.0 0.00076 2.6E-08 46.9 4.5 58 214-277 8-65 (67)
19 2lnb_A Z-DNA-binding protein 1 97.0 0.00053 1.8E-08 48.7 3.5 52 213-269 16-67 (80)
20 3f2b_A DNA-directed DNA polyme 96.7 0.0054 1.9E-07 63.5 10.1 79 70-148 17-102 (1041)
21 1oyi_A Double-stranded RNA-bin 96.7 0.0023 7.7E-08 46.4 4.9 48 215-269 16-63 (82)
22 1xmk_A Double-stranded RNA-spe 96.5 0.0022 7.5E-08 46.2 3.8 49 215-269 10-59 (79)
23 1wyd_A Hypothetical aspartyl-t 96.5 0.023 7.8E-07 53.6 11.7 74 72-146 18-94 (429)
24 1xn7_A Hypothetical protein YH 96.4 0.0046 1.6E-07 44.4 4.9 45 219-269 5-49 (78)
25 3m4p_A Ehasnrs, asparaginyl-tR 96.3 0.028 9.5E-07 53.3 11.6 77 71-147 31-119 (456)
26 1l0w_A Aspartyl-tRNA synthetas 96.3 0.028 9.7E-07 54.9 11.5 75 72-147 18-100 (580)
27 1e1o_A Lysyl-tRNA synthetase, 96.2 0.041 1.4E-06 52.8 12.3 101 43-147 41-145 (504)
28 2jt1_A PEFI protein; solution 96.2 0.0047 1.6E-07 44.2 4.3 54 216-269 4-57 (77)
29 3nem_A Aspartyl-tRNA synthetas 96.2 0.029 9.9E-07 53.0 10.9 77 71-147 17-98 (438)
30 1c0a_A Aspartyl tRNA synthetas 96.2 0.023 7.9E-07 55.6 10.4 77 72-148 17-103 (585)
31 2htj_A P fimbrial regulatory p 96.2 0.0055 1.9E-07 43.7 4.5 45 218-268 2-46 (81)
32 2dk5_A DNA-directed RNA polyme 96.2 0.0083 2.8E-07 44.3 5.5 54 212-269 16-69 (91)
33 2k02_A Ferrous iron transport 96.2 0.0059 2E-07 44.7 4.6 46 219-270 5-50 (87)
34 1eov_A ASPRS, aspartyl-tRNA sy 96.1 0.029 9.8E-07 53.7 10.5 78 71-148 37-128 (487)
35 1sfu_A 34L protein; protein/Z- 96.1 0.015 5.1E-07 41.2 6.2 51 216-269 12-62 (75)
36 2xvc_A ESCRT-III, SSO0910; cel 96.0 0.0096 3.3E-07 39.7 4.7 45 217-267 11-56 (59)
37 4ex5_A Lysine--tRNA ligase; st 96.0 0.027 9.2E-07 54.4 9.6 77 71-147 87-166 (529)
38 1n9w_A Aspartyl-tRNA synthetas 95.9 0.06 2.1E-06 50.5 11.4 68 72-148 15-86 (422)
39 1x54_A Asparaginyl-tRNA synthe 95.9 0.032 1.1E-06 52.6 9.5 77 72-148 18-99 (434)
40 3a74_A Lysyl-tRNA synthetase; 95.8 0.037 1.3E-06 53.0 9.5 102 43-148 33-137 (493)
41 2xgt_A Asparaginyl-tRNA synthe 95.8 0.074 2.5E-06 50.1 11.5 76 72-148 13-95 (435)
42 1qzg_A Protection of telomeres 95.8 0.22 7.5E-06 41.4 13.0 88 40-143 25-127 (187)
43 3i7f_A Aspartyl-tRNA synthetas 95.6 0.097 3.3E-06 50.7 11.8 77 71-147 63-150 (548)
44 3bju_A Lysyl-tRNA synthetase; 95.5 0.1 3.4E-06 50.4 11.5 101 43-148 33-139 (521)
45 2yu3_A DNA-directed RNA polyme 95.5 0.02 6.7E-07 42.6 5.1 57 212-272 33-89 (95)
46 3i4p_A Transcriptional regulat 95.5 0.022 7.7E-07 46.0 5.9 48 214-267 1-48 (162)
47 2cfx_A HTH-type transcriptiona 95.3 0.025 8.4E-07 44.7 5.3 48 214-267 3-50 (144)
48 3b73_A PHIH1 repressor-like pr 95.2 0.018 6.3E-07 44.0 4.3 59 214-279 11-71 (111)
49 2fu4_A Ferric uptake regulatio 95.0 0.039 1.3E-06 39.2 5.4 54 214-271 15-73 (83)
50 2pn6_A ST1022, 150AA long hypo 95.0 0.039 1.3E-06 43.7 5.9 48 215-268 2-49 (150)
51 2dbb_A Putative HTH-type trans 94.9 0.029 9.8E-07 44.6 4.9 48 214-267 7-54 (151)
52 1i1g_A Transcriptional regulat 94.9 0.027 9.1E-07 44.0 4.6 48 214-267 2-49 (141)
53 3r0a_A Putative transcriptiona 94.9 0.033 1.1E-06 43.0 5.0 53 213-269 23-75 (123)
54 3cuo_A Uncharacterized HTH-typ 94.9 0.07 2.4E-06 38.6 6.5 52 215-272 23-74 (99)
55 4gs3_A Single-stranded DNA-bin 94.9 0.33 1.1E-05 36.7 10.3 60 70-133 11-81 (107)
56 2cg4_A Regulatory protein ASNC 94.8 0.034 1.2E-06 44.2 5.0 49 214-268 6-54 (152)
57 1l1o_C Replication protein A 7 94.8 0.1 3.5E-06 43.2 8.0 76 88-164 80-178 (181)
58 1sfx_A Conserved hypothetical 94.8 0.038 1.3E-06 40.4 4.9 53 213-271 17-69 (109)
59 1y0u_A Arsenical resistance op 94.8 0.06 2.1E-06 39.3 5.9 55 215-279 30-84 (96)
60 2w25_A Probable transcriptiona 94.7 0.042 1.4E-06 43.6 5.3 48 214-267 5-52 (150)
61 2ia0_A Putative HTH-type trans 94.7 0.041 1.4E-06 45.0 5.3 49 213-267 14-62 (171)
62 3bro_A Transcriptional regulat 94.5 0.068 2.3E-06 41.1 6.0 56 213-272 31-86 (141)
63 2cyy_A Putative HTH-type trans 94.5 0.039 1.3E-06 43.8 4.7 49 213-267 4-52 (151)
64 2p5v_A Transcriptional regulat 94.5 0.05 1.7E-06 43.7 5.3 49 213-267 7-55 (162)
65 2hpi_A DNA polymerase III alph 94.4 0.046 1.6E-06 57.6 6.2 75 71-148 1043-1122(1220)
66 3eco_A MEPR; mutlidrug efflux 94.3 0.072 2.5E-06 41.0 5.8 56 213-272 28-83 (139)
67 3k2z_A LEXA repressor; winged 94.3 0.019 6.6E-07 47.9 2.5 56 213-269 2-57 (196)
68 2e1c_A Putative HTH-type trans 94.3 0.053 1.8E-06 44.3 5.1 49 213-267 24-72 (171)
69 2b0l_A GTP-sensing transcripti 94.3 0.046 1.6E-06 41.0 4.3 34 236-269 42-76 (102)
70 1txy_A Primosomal replication 94.2 0.65 2.2E-05 34.6 10.6 77 70-148 2-101 (104)
71 2fbh_A Transcriptional regulat 94.1 0.12 4.2E-06 39.7 6.8 54 213-272 34-88 (146)
72 4ham_A LMO2241 protein; struct 94.1 0.073 2.5E-06 41.6 5.3 53 216-268 14-70 (134)
73 2dk8_A DNA-directed RNA polyme 94.0 0.059 2E-06 38.7 4.2 47 215-266 13-60 (81)
74 3tqn_A Transcriptional regulat 94.0 0.12 4.2E-06 39.1 6.3 35 235-269 31-66 (113)
75 4dka_C RNA-editing complex pro 93.9 0.43 1.5E-05 35.6 8.8 64 71-134 4-77 (105)
76 2kko_A Possible transcriptiona 93.7 0.089 3E-06 39.4 5.0 50 216-272 25-74 (108)
77 1p6r_A Penicillinase repressor 93.7 0.092 3.1E-06 37.1 4.9 54 213-272 6-63 (82)
78 3cdh_A Transcriptional regulat 93.7 0.17 5.8E-06 39.6 6.9 54 213-272 40-93 (155)
79 2x4h_A Hypothetical protein SS 93.5 0.08 2.7E-06 41.0 4.6 55 213-269 10-64 (139)
80 2frh_A SARA, staphylococcal ac 93.5 0.078 2.7E-06 40.7 4.5 56 213-272 34-89 (127)
81 3hsr_A HTH-type transcriptiona 93.5 0.14 4.9E-06 39.5 6.1 54 213-272 33-86 (140)
82 3by6_A Predicted transcription 93.4 0.15 5.2E-06 39.4 6.0 35 235-269 33-68 (126)
83 3kdf_A Replication protein A 1 93.4 1.3 4.3E-05 34.2 11.1 66 71-149 23-89 (121)
84 3tgn_A ADC operon repressor AD 93.3 0.19 6.4E-06 38.8 6.5 52 213-271 35-86 (146)
85 1xjv_A Protection of telomeres 93.3 0.94 3.2E-05 40.1 11.9 68 71-141 16-92 (294)
86 1ynx_A Replication factor-A pr 93.3 0.1 3.5E-06 39.7 4.7 40 87-128 40-79 (114)
87 3koj_A Uncharacterized protein 93.3 1.1 3.8E-05 33.7 10.5 76 69-146 10-108 (108)
88 2d1h_A ST1889, 109AA long hypo 93.2 0.1 3.6E-06 38.1 4.7 55 213-272 18-72 (109)
89 3bpv_A Transcriptional regulat 93.2 0.13 4.4E-06 39.3 5.3 54 213-272 26-79 (138)
90 1lj9_A Transcriptional regulat 93.2 0.13 4.6E-06 39.6 5.5 54 213-272 26-79 (144)
91 2ek5_A Predicted transcription 93.2 0.19 6.6E-06 39.0 6.3 35 235-269 26-61 (129)
92 3g3z_A NMB1585, transcriptiona 93.1 0.16 5.3E-06 39.3 5.8 54 213-272 28-81 (145)
93 1tbx_A ORF F-93, hypothetical 93.1 0.14 4.9E-06 37.3 5.2 54 213-272 5-62 (99)
94 2gxg_A 146AA long hypothetical 93.1 0.23 7.7E-06 38.3 6.7 53 213-272 34-86 (146)
95 2wte_A CSA3; antiviral protein 93.1 0.13 4.6E-06 44.5 5.7 60 213-278 149-208 (244)
96 3bj6_A Transcriptional regulat 93.0 0.17 5.7E-06 39.4 5.8 54 213-272 37-90 (152)
97 3bdd_A Regulatory protein MARR 93.0 0.14 4.7E-06 39.3 5.3 53 213-271 28-80 (142)
98 4gop_A Putative uncharacterize 93.0 0.29 1E-05 37.4 6.9 67 71-149 19-89 (114)
99 3nrv_A Putative transcriptiona 92.9 0.17 5.7E-06 39.3 5.6 54 213-272 37-90 (148)
100 3ech_A MEXR, multidrug resista 92.9 0.1 3.6E-06 40.3 4.4 54 213-272 34-87 (142)
101 2nnn_A Probable transcriptiona 92.9 0.13 4.4E-06 39.3 4.9 54 213-272 35-88 (140)
102 2qww_A Transcriptional regulat 92.8 0.17 5.9E-06 39.4 5.7 50 213-268 38-87 (154)
103 1r1u_A CZRA, repressor protein 92.8 0.16 5.6E-06 37.7 5.2 51 215-272 25-75 (106)
104 3fm5_A Transcriptional regulat 92.8 0.13 4.6E-06 40.0 5.0 55 213-272 36-90 (150)
105 3neu_A LIN1836 protein; struct 92.8 0.29 9.7E-06 37.7 6.7 35 235-269 35-70 (125)
106 3oop_A LIN2960 protein; protei 92.7 0.13 4.4E-06 39.7 4.8 54 213-272 34-87 (143)
107 3s2w_A Transcriptional regulat 92.7 0.16 5.4E-06 40.1 5.3 54 213-272 47-100 (159)
108 3i71_A Ethanolamine utilizatio 92.7 0.23 8E-06 33.1 5.1 44 220-268 7-50 (68)
109 1q1h_A TFE, transcription fact 92.6 0.1 3.5E-06 39.0 3.8 49 216-269 18-66 (110)
110 3deu_A Transcriptional regulat 92.6 0.17 5.9E-06 40.5 5.5 55 213-272 50-104 (166)
111 2vn2_A DNAD, chromosome replic 92.6 0.13 4.6E-06 39.8 4.6 58 213-271 29-86 (128)
112 1ku9_A Hypothetical protein MJ 92.5 0.22 7.6E-06 38.3 5.9 54 213-271 23-76 (152)
113 4ah6_A Aspartate--tRNA ligase, 92.5 0.23 7.7E-06 48.8 7.1 74 71-147 25-110 (617)
114 2pex_A Transcriptional regulat 92.5 0.19 6.6E-06 39.2 5.5 54 213-272 44-97 (153)
115 2pi2_E Replication protein A 1 92.5 1.3 4.3E-05 35.2 10.2 66 71-149 44-110 (142)
116 2rdp_A Putative transcriptiona 92.4 0.19 6.5E-06 39.0 5.3 54 213-272 39-92 (150)
117 3jth_A Transcription activator 92.3 0.35 1.2E-05 35.1 6.4 51 215-272 22-72 (98)
118 1jgs_A Multiple antibiotic res 92.3 0.2 6.7E-06 38.3 5.2 54 213-272 31-84 (138)
119 2fa5_A Transcriptional regulat 92.3 0.22 7.5E-06 39.2 5.7 54 213-272 46-99 (162)
120 3rkx_A Biotin-[acetyl-COA-carb 92.1 0.16 5.6E-06 45.8 5.2 58 215-276 2-59 (323)
121 3cjn_A Transcriptional regulat 92.1 0.21 7E-06 39.4 5.3 54 213-272 49-102 (162)
122 3k0l_A Repressor protein; heli 92.1 0.16 5.4E-06 40.3 4.6 54 213-272 43-96 (162)
123 1ufm_A COP9 complex subunit 4; 92.1 0.099 3.4E-06 37.8 3.0 40 234-273 28-67 (84)
124 2nyx_A Probable transcriptiona 92.1 0.17 5.9E-06 40.4 4.8 54 213-272 42-95 (168)
125 4hbl_A Transcriptional regulat 92.0 0.18 6E-06 39.4 4.8 54 213-272 38-91 (149)
126 1r7j_A Conserved hypothetical 92.0 0.33 1.1E-05 35.7 5.9 42 236-279 20-61 (95)
127 1u2w_A CADC repressor, cadmium 92.0 0.24 8E-06 37.9 5.3 51 216-272 42-92 (122)
128 1s3j_A YUSO protein; structura 92.0 0.17 5.7E-06 39.6 4.6 54 213-272 34-87 (155)
129 2fbi_A Probable transcriptiona 92.0 0.16 5.5E-06 38.9 4.4 54 213-272 33-86 (142)
130 2a61_A Transcriptional regulat 92.0 0.19 6.4E-06 38.7 4.8 54 213-272 30-83 (145)
131 2y75_A HTH-type transcriptiona 91.8 0.27 9.1E-06 37.8 5.5 56 219-277 12-68 (129)
132 3fhw_A Primosomal replication 91.8 1.9 6.5E-05 32.9 10.1 47 100-149 49-98 (115)
133 3jw4_A Transcriptional regulat 91.7 0.1 3.4E-06 40.7 2.9 56 213-272 38-93 (148)
134 3e6m_A MARR family transcripti 91.6 0.2 6.9E-06 39.6 4.7 54 213-272 50-103 (161)
135 1ub9_A Hypothetical protein PH 91.6 0.16 5.6E-06 36.6 3.8 50 215-270 15-64 (100)
136 2oqg_A Possible transcriptiona 91.6 0.25 8.5E-06 36.7 5.0 50 215-271 20-69 (114)
137 3f3x_A Transcriptional regulat 91.6 0.19 6.4E-06 38.8 4.4 54 213-273 34-87 (144)
138 1ucr_A Protein DSVD; dissimila 91.5 0.17 5.8E-06 35.8 3.6 50 215-266 2-52 (78)
139 2eth_A Transcriptional regulat 91.5 0.19 6.6E-06 39.3 4.5 54 213-272 41-94 (154)
140 3pqk_A Biofilm growth-associat 91.5 0.38 1.3E-05 35.2 5.8 51 215-272 22-72 (102)
141 1mkm_A ICLR transcriptional re 91.5 0.28 9.6E-06 42.2 5.8 54 219-278 11-64 (249)
142 4gop_C Putative uncharacterize 91.4 0.51 1.7E-05 44.3 8.0 76 88-164 345-443 (444)
143 3tqy_A Single-stranded DNA-bin 91.3 1.1 3.8E-05 36.0 8.8 79 69-149 7-114 (158)
144 4b8x_A SCO5413, possible MARR- 91.2 0.29 9.9E-06 38.4 5.2 57 213-273 32-88 (147)
145 3nqo_A MARR-family transcripti 91.2 0.28 9.7E-06 40.1 5.3 56 213-272 38-93 (189)
146 3bja_A Transcriptional regulat 91.2 0.16 5.4E-06 38.7 3.5 54 213-272 30-83 (139)
147 1mzb_A Ferric uptake regulatio 91.1 0.38 1.3E-05 37.5 5.7 53 214-270 16-73 (136)
148 2vw9_A Single-stranded DNA bin 91.1 0.98 3.4E-05 35.3 8.1 50 98-149 49-107 (134)
149 2jsc_A Transcriptional regulat 91.0 0.27 9.3E-06 37.3 4.7 51 215-272 20-70 (118)
150 2xrn_A HTH-type transcriptiona 91.0 0.27 9.3E-06 42.1 5.2 54 220-278 10-63 (241)
151 4aik_A Transcriptional regulat 91.0 0.42 1.4E-05 37.7 6.0 55 213-272 28-82 (151)
152 2o0y_A Transcriptional regulat 90.9 0.35 1.2E-05 42.0 5.9 51 221-277 28-78 (260)
153 3r4k_A Transcriptional regulat 90.9 0.27 9.1E-06 42.7 5.1 54 220-278 10-63 (260)
154 3eiv_A Single-stranded DNA-bin 90.8 1.6 5.4E-05 36.6 9.6 75 70-146 4-108 (199)
155 3vdy_A SSB, single-stranded DN 90.8 1.3 4.4E-05 33.5 8.4 79 70-150 5-109 (116)
156 2bv6_A MGRA, HTH-type transcri 90.7 0.19 6.6E-06 38.6 3.7 53 213-271 34-86 (142)
157 2fe3_A Peroxide operon regulat 90.7 0.51 1.7E-05 37.2 6.2 54 214-272 20-78 (145)
158 4gop_C Putative uncharacterize 90.7 0.31 1.1E-05 45.8 5.7 69 72-141 135-216 (444)
159 1z6r_A MLC protein; transcript 90.6 0.33 1.1E-05 44.6 5.7 47 218-270 18-64 (406)
160 3k8a_A Putative primosomal rep 90.6 3.1 0.00011 30.9 10.1 44 100-147 55-101 (103)
161 1z9f_A Single-strand binding p 90.6 1.6 5.5E-05 34.9 9.1 78 70-149 16-121 (153)
162 1uly_A Hypothetical protein PH 90.6 0.37 1.3E-05 40.1 5.5 48 215-269 19-66 (192)
163 1qvc_A Single stranded DNA bin 90.6 0.87 3E-05 36.1 7.4 61 70-132 5-85 (145)
164 4fx0_A Probable transcriptiona 90.4 0.44 1.5E-05 37.5 5.6 58 213-272 30-87 (148)
165 2g9w_A Conserved hypothetical 90.4 0.54 1.9E-05 36.5 6.1 57 213-274 6-66 (138)
166 2hr3_A Probable transcriptiona 90.3 0.24 8.1E-06 38.3 3.9 54 214-272 33-86 (147)
167 1z91_A Organic hydroperoxide r 90.3 0.26 8.9E-06 38.0 4.1 54 213-272 37-90 (147)
168 1fx7_A Iron-dependent represso 90.1 0.17 5.7E-06 43.1 3.0 61 213-278 3-65 (230)
169 3edp_A LIN2111 protein; APC883 90.0 0.64 2.2E-05 39.7 6.7 52 217-269 14-66 (236)
170 1sr3_A APO-CCME; OB fold, beta 89.9 1.3 4.5E-05 34.8 7.8 56 71-132 29-88 (136)
171 1se8_A Single-strand binding p 89.8 1.7 5.8E-05 38.7 9.5 77 70-149 129-233 (301)
172 3u2r_A Regulatory protein MARR 89.8 0.17 6E-06 40.3 2.8 56 213-272 43-98 (168)
173 1j5y_A Transcriptional regulat 89.8 0.37 1.3E-05 39.7 4.8 47 217-268 22-69 (187)
174 1v1q_A Primosomal replication 89.7 6 0.00021 30.9 12.6 47 100-148 67-118 (134)
175 1bia_A BIRA bifunctional prote 89.6 0.68 2.3E-05 41.5 6.8 57 215-277 4-60 (321)
176 2g7u_A Transcriptional regulat 89.6 0.47 1.6E-05 41.0 5.6 52 220-278 18-69 (257)
177 1okr_A MECI, methicillin resis 89.6 0.23 7.9E-06 37.4 3.2 55 213-273 7-65 (123)
178 3boq_A Transcriptional regulat 89.5 0.23 8E-06 39.0 3.3 54 213-272 44-98 (160)
179 3en2_A Probable primosomal rep 89.4 1.7 5.7E-05 32.4 7.7 31 100-133 50-80 (101)
180 2w57_A Ferric uptake regulatio 89.4 0.53 1.8E-05 37.4 5.3 52 214-269 15-71 (150)
181 2o03_A Probable zinc uptake re 89.3 0.47 1.6E-05 36.7 4.8 52 215-271 10-66 (131)
182 3kp7_A Transcriptional regulat 89.3 0.31 1E-05 38.0 3.8 49 213-268 35-83 (151)
183 2hzt_A Putative HTH-type trans 89.1 0.87 3E-05 33.7 6.1 49 217-272 15-64 (107)
184 1hw1_A FADR, fatty acid metabo 89.1 0.73 2.5E-05 38.9 6.3 36 233-268 27-63 (239)
185 2k4b_A Transcriptional regulat 89.1 0.21 7.3E-06 37.1 2.6 55 213-273 32-90 (99)
186 2vxz_A Pyrsv_GP04; viral prote 89.0 0.71 2.4E-05 36.9 5.6 47 215-268 10-56 (165)
187 3stb_C RNA-editing complex pro 89.0 0.71 2.4E-05 36.8 5.7 72 61-133 35-120 (148)
188 3f8m_A GNTR-family protein tra 89.0 0.62 2.1E-05 40.1 5.9 34 235-268 34-68 (248)
189 2fxa_A Protease production reg 88.9 0.42 1.4E-05 39.9 4.6 54 213-272 45-98 (207)
190 3rn5_A Interferon-inducible pr 88.8 3.7 0.00013 34.2 9.9 55 81-140 133-188 (208)
191 1r1t_A Transcriptional repress 88.7 0.87 3E-05 34.8 5.9 50 216-272 46-95 (122)
192 3t8r_A Staphylococcus aureus C 88.6 0.8 2.7E-05 36.1 5.8 51 218-271 13-63 (143)
193 1z05_A Transcriptional regulat 88.6 0.42 1.4E-05 44.4 4.8 46 218-269 41-86 (429)
194 2xig_A Ferric uptake regulatio 88.6 0.55 1.9E-05 37.3 4.9 51 214-269 25-80 (150)
195 2ia2_A Putative transcriptiona 88.5 0.54 1.8E-05 40.8 5.2 51 220-277 25-75 (265)
196 2l02_A Uncharacterized protein 88.5 0.73 2.5E-05 33.0 4.9 46 219-270 11-56 (82)
197 2fbk_A Transcriptional regulat 88.5 0.16 5.6E-06 41.1 1.7 57 213-272 66-122 (181)
198 1fse_A GERE; helix-turn-helix 88.4 1.2 3.9E-05 30.1 5.9 42 212-261 10-51 (74)
199 1jmc_A Protein (replication pr 88.4 0.61 2.1E-05 39.9 5.4 55 72-128 20-83 (246)
200 3mwm_A ZUR, putative metal upt 88.3 0.48 1.6E-05 37.1 4.3 51 214-269 12-67 (139)
201 3afp_A Single-stranded DNA-bin 88.3 1.1 3.8E-05 36.5 6.6 61 70-132 4-85 (168)
202 2f2e_A PA1607; transcription f 88.2 0.84 2.9E-05 36.0 5.7 50 217-273 25-74 (146)
203 2kct_A Cytochrome C-type bioge 88.2 2.8 9.4E-05 30.8 8.0 66 71-144 9-81 (94)
204 1on2_A Transcriptional regulat 88.2 0.49 1.7E-05 36.6 4.3 43 235-278 21-63 (142)
205 1sd4_A Penicillinase repressor 88.1 0.5 1.7E-05 35.6 4.2 56 213-274 7-66 (126)
206 2l01_A Uncharacterized protein 88.1 1.1 3.8E-05 31.6 5.5 47 219-271 13-60 (77)
207 3eet_A Putative GNTR-family tr 87.9 0.8 2.7E-05 40.0 5.9 35 235-269 51-86 (272)
208 2pg4_A Uncharacterized protein 87.9 0.54 1.8E-05 33.9 4.1 42 221-267 20-62 (95)
209 3ulq_B Transcriptional regulat 87.9 1 3.5E-05 32.5 5.6 43 212-262 28-70 (90)
210 1se8_A Single-strand binding p 87.8 2 6.9E-05 38.2 8.6 78 70-149 5-111 (301)
211 1j6q_A Cytochrome C maturation 87.8 2.5 8.5E-05 33.2 8.0 56 71-132 33-93 (136)
212 2obp_A Putative DNA-binding pr 87.7 1.3 4.5E-05 32.6 6.1 61 213-273 13-73 (96)
213 3f6o_A Probable transcriptiona 87.7 0.69 2.4E-05 34.9 4.8 51 215-272 17-67 (118)
214 1stz_A Heat-inducible transcri 87.7 0.69 2.4E-05 41.9 5.5 50 214-269 15-71 (338)
215 1je8_A Nitrate/nitrite respons 87.6 1.1 3.9E-05 31.5 5.6 42 212-261 20-61 (82)
216 1jmc_A Protein (replication pr 87.5 1.8 6.1E-05 36.9 7.8 66 71-141 139-217 (246)
217 1tc3_C Protein (TC3 transposas 87.4 0.69 2.4E-05 28.2 3.9 39 218-264 11-49 (51)
218 3bwg_A Uncharacterized HTH-typ 87.3 1 3.5E-05 38.5 6.1 52 217-269 10-62 (239)
219 2fxq_A Single-strand binding p 87.2 3.1 0.00011 36.1 9.2 78 69-149 127-229 (264)
220 4dam_A Single-stranded DNA-bin 87.2 1 3.6E-05 34.9 5.5 62 68-132 13-95 (128)
221 1v4r_A Transcriptional repress 87.0 0.49 1.7E-05 34.7 3.4 35 235-269 33-68 (102)
222 2wv0_A YVOA, HTH-type transcri 87.0 1 3.5E-05 38.5 6.0 35 235-269 32-67 (243)
223 2v79_A DNA replication protein 86.6 0.47 1.6E-05 37.2 3.2 59 213-272 29-89 (135)
224 2qvo_A Uncharacterized protein 86.2 0.43 1.5E-05 34.5 2.7 51 214-266 10-60 (95)
225 3ulp_A Single-strand binding p 86.2 1.6 5.4E-05 33.4 6.1 65 69-135 5-92 (124)
226 2h09_A Transcriptional regulat 86.2 0.93 3.2E-05 35.5 4.9 37 235-271 53-89 (155)
227 3mq0_A Transcriptional repress 86.1 0.61 2.1E-05 40.8 4.1 52 220-277 34-85 (275)
228 3sxy_A Transcriptional regulat 85.9 0.83 2.8E-05 38.2 4.7 36 233-268 32-67 (218)
229 3k7u_C MP18 RNA editing comple 85.8 2.2 7.6E-05 33.9 6.9 61 70-132 6-85 (148)
230 1gm5_A RECG; helicase, replica 85.8 0.69 2.3E-05 46.7 4.8 65 72-140 167-239 (780)
231 3lwf_A LIN1550 protein, putati 85.7 1.2 4.3E-05 35.7 5.4 50 219-271 30-79 (159)
232 2fsw_A PG_0823 protein; alpha- 85.7 1.2 4E-05 32.9 5.0 49 217-272 26-75 (107)
233 3cuq_B Vacuolar protein-sortin 85.6 1.2 4.2E-05 37.8 5.6 50 213-268 151-200 (218)
234 3eyy_A Putative iron uptake re 85.4 0.82 2.8E-05 36.0 4.2 50 214-269 17-71 (145)
235 1p4x_A Staphylococcal accessor 85.4 1.1 3.9E-05 38.7 5.4 56 213-272 155-210 (250)
236 1u5t_A Appears to BE functiona 85.4 1.2 4.2E-05 38.2 5.5 51 212-268 163-213 (233)
237 3c7j_A Transcriptional regulat 85.0 1.4 4.9E-05 37.5 5.9 37 233-269 46-82 (237)
238 2pjp_A Selenocysteine-specific 85.0 1.6 5.5E-05 33.2 5.6 52 217-276 8-59 (121)
239 3hrs_A Metalloregulator SCAR; 84.9 1.5 5E-05 36.9 5.8 44 234-278 18-61 (214)
240 2hs5_A Putative transcriptiona 84.9 1.1 3.7E-05 38.2 5.0 52 217-268 29-83 (239)
241 1wi9_A Protein C20ORF116 homol 84.8 1.5 5E-05 30.6 4.7 50 217-272 8-57 (72)
242 3lgj_A Single-stranded DNA-bin 84.8 2.3 7.7E-05 34.6 6.7 63 69-133 22-105 (169)
243 3ihu_A Transcriptional regulat 84.7 1.1 3.8E-05 37.4 5.0 52 217-268 17-71 (222)
244 3cuq_A Vacuolar-sorting protei 84.7 1.5 5.2E-05 37.7 5.8 51 212-268 150-200 (234)
245 3c57_A Two component transcrip 84.7 1.9 6.4E-05 31.2 5.6 42 212-261 26-67 (95)
246 3ull_A DNA binding protein; DN 84.7 5.2 0.00018 30.9 8.5 80 69-150 13-127 (132)
247 1hsj_A Fusion protein consisti 84.6 0.93 3.2E-05 42.3 4.9 56 213-272 401-456 (487)
248 4ets_A Ferric uptake regulatio 84.5 1.5 5.2E-05 35.2 5.5 51 214-269 31-88 (162)
249 2qq9_A Diphtheria toxin repres 84.4 0.32 1.1E-05 41.3 1.4 60 214-278 4-65 (226)
250 2w48_A Sorbitol operon regulat 84.3 0.96 3.3E-05 40.2 4.6 33 235-267 20-52 (315)
251 4a5n_A Uncharacterized HTH-typ 84.2 2 6.9E-05 33.3 5.9 51 216-273 26-77 (131)
252 1p4w_A RCSB; solution structur 84.0 1.6 5.6E-05 32.1 5.0 42 212-261 33-74 (99)
253 1z7u_A Hypothetical protein EF 83.8 1.3 4.6E-05 32.9 4.6 50 216-272 22-72 (112)
254 1yyv_A Putative transcriptiona 83.6 1.3 4.6E-05 34.2 4.6 49 217-272 36-85 (131)
255 3pgz_A Single-stranded DNA-bin 83.6 2.2 7.5E-05 35.6 6.1 68 62-132 19-107 (193)
256 1ylf_A RRF2 family protein; st 83.5 1.3 4.4E-05 34.9 4.6 49 219-271 17-65 (149)
257 2hoe_A N-acetylglucosamine kin 83.5 0.78 2.7E-05 41.8 3.7 44 219-269 23-66 (380)
258 3f6v_A Possible transcriptiona 83.4 1.4 4.8E-05 35.0 4.7 51 215-272 57-107 (151)
259 1p4x_A Staphylococcal accessor 83.2 0.92 3.2E-05 39.2 3.9 56 213-272 31-86 (250)
260 2lkp_A Transcriptional regulat 83.2 1.4 4.7E-05 32.9 4.5 51 215-272 31-81 (119)
261 4a0z_A Transcription factor FA 82.7 1 3.5E-05 37.3 3.8 44 217-266 13-56 (190)
262 3ic7_A Putative transcriptiona 82.6 0.31 1.1E-05 37.6 0.5 52 217-269 16-68 (126)
263 2rnj_A Response regulator prot 82.5 1.8 6.2E-05 30.9 4.7 42 212-261 28-69 (91)
264 1x3u_A Transcriptional regulat 82.3 2.2 7.4E-05 29.2 4.9 41 213-261 16-56 (79)
265 2jpc_A SSRB; DNA binding prote 82.3 2.1 7E-05 27.8 4.6 36 218-261 3-38 (61)
266 4hik_A Protection of telomeres 82.1 5 0.00017 31.7 7.4 55 71-127 15-92 (143)
267 1eqq_A Single stranded DNA bin 82.0 0.76 2.6E-05 37.8 2.7 61 70-132 6-86 (178)
268 2p7v_B Sigma-70, RNA polymeras 82.0 4 0.00014 27.2 6.1 46 213-261 5-50 (68)
269 2gqq_A Leucine-responsive regu 81.9 0.11 3.8E-06 41.7 -2.4 48 214-267 11-58 (163)
270 2fxq_A Single-strand binding p 81.7 4.9 0.00017 34.8 8.0 80 70-151 5-111 (264)
271 3df8_A Possible HXLR family tr 81.7 3.2 0.00011 30.9 6.0 51 216-271 27-78 (111)
272 1ku3_A Sigma factor SIGA; heli 81.7 4.3 0.00015 27.4 6.2 47 212-261 9-59 (73)
273 3k69_A Putative transcription 81.6 1.3 4.3E-05 35.7 3.9 47 219-269 15-61 (162)
274 3rlo_A Gamma-interferon-induci 81.6 5.2 0.00018 33.2 7.5 42 82-128 130-171 (204)
275 2o8x_A Probable RNA polymerase 81.5 3.5 0.00012 27.2 5.7 42 212-260 14-55 (70)
276 1jb7_A Telomere-binding protei 81.5 6.6 0.00023 37.4 9.4 68 71-141 50-138 (495)
277 2di3_A Bacterial regulatory pr 80.9 1.8 6.1E-05 36.6 4.8 35 234-268 25-60 (239)
278 3hug_A RNA polymerase sigma fa 80.4 3.4 0.00012 29.4 5.6 40 213-259 37-76 (92)
279 2o0m_A Transcriptional regulat 79.3 0.38 1.3E-05 43.5 0.0 50 215-270 19-68 (345)
280 1bja_A Transcription regulator 79.0 3.1 0.00011 30.6 4.9 50 212-267 12-62 (95)
281 1tty_A Sigma-A, RNA polymerase 78.6 5.7 0.0002 27.9 6.2 45 212-259 17-61 (87)
282 4dni_A Fusion protein of RNA-e 78.5 5.4 0.00019 34.6 7.1 62 69-133 145-226 (257)
283 2p8t_A Hypothetical protein PH 78.2 2.3 7.9E-05 35.6 4.5 47 217-268 16-62 (200)
284 3u50_C Telomerase-associated p 77.6 2.9 9.8E-05 34.2 4.8 60 89-148 77-169 (172)
285 1xd7_A YWNA; structural genomi 77.5 4.2 0.00014 31.7 5.7 47 219-271 12-58 (145)
286 2oq0_A Gamma-interferon-induci 77.3 24 0.00082 29.3 10.2 54 82-140 138-192 (206)
287 3iuo_A ATP-dependent DNA helic 77.3 3.4 0.00012 31.5 4.9 42 216-265 20-61 (122)
288 2v9v_A Selenocysteine-specific 76.3 2 7E-05 32.8 3.5 56 214-269 64-122 (135)
289 3u1d_A Uncharacterized protein 76.3 4 0.00014 32.6 5.2 49 216-268 29-78 (151)
290 2p4w_A Transcriptional regulat 76.1 3.2 0.00011 34.5 4.9 50 215-271 14-63 (202)
291 2ra5_A Putative transcriptiona 75.9 0.75 2.6E-05 39.6 0.9 33 236-268 39-72 (247)
292 1lva_A Selenocysteine-specific 74.2 4.8 0.00016 34.7 5.6 55 217-276 142-196 (258)
293 1jhf_A LEXA repressor; LEXA SO 74.0 1.8 6E-05 35.6 2.7 53 213-268 3-58 (202)
294 3lst_A CALO1 methyltransferase 73.6 3.5 0.00012 36.7 4.8 42 236-279 55-96 (348)
295 2ip2_A Probable phenazine-spec 73.1 4.6 0.00016 35.5 5.4 54 217-278 29-82 (334)
296 1w7p_D VPS36P, YLR417W; ESCRT- 72.9 5.2 0.00018 38.7 6.0 48 215-268 493-547 (566)
297 3txn_A 26S proteasome regulato 72.8 2 7E-05 39.7 3.0 38 235-272 315-352 (394)
298 3dp7_A SAM-dependent methyltra 72.2 4.4 0.00015 36.4 5.1 55 217-278 36-90 (363)
299 2r3s_A Uncharacterized protein 72.2 4 0.00014 35.7 4.8 53 217-278 27-79 (335)
300 3mzy_A RNA polymerase sigma-H 71.9 6.2 0.00021 30.2 5.4 39 213-259 109-147 (164)
301 2qlz_A Transcription factor PF 71.8 1.9 6.5E-05 36.9 2.4 51 215-272 11-62 (232)
302 3i53_A O-methyltransferase; CO 70.9 7.1 0.00024 34.3 6.1 54 217-278 26-79 (332)
303 1zyb_A Transcription regulator 70.5 8.2 0.00028 31.7 6.1 53 216-268 163-218 (232)
304 3t72_q RNA polymerase sigma fa 69.7 8.4 0.00029 28.2 5.3 42 213-257 19-60 (99)
305 2lfw_A PHYR sigma-like domain; 69.7 5.7 0.00019 31.0 4.7 40 212-258 92-131 (157)
306 1ft9_A Carbon monoxide oxidati 69.6 5.8 0.0002 32.4 4.9 32 237-268 164-195 (222)
307 3go5_A Multidomain protein wit 69.6 7.7 0.00026 34.1 5.9 57 213-269 221-278 (285)
308 2zkz_A Transcriptional repress 69.4 4 0.00014 29.5 3.5 48 215-269 26-73 (99)
309 4esf_A PADR-like transcription 69.2 6.1 0.00021 29.7 4.6 48 217-271 12-65 (117)
310 1x19_A CRTF-related protein; m 68.4 8.2 0.00028 34.3 6.0 53 217-278 52-104 (359)
311 3szt_A QCSR, quorum-sensing co 68.2 7.8 0.00027 32.6 5.5 41 213-261 175-215 (237)
312 1xsv_A Hypothetical UPF0122 pr 68.1 9.8 0.00034 28.3 5.5 40 213-259 25-64 (113)
313 4b4t_P 26S proteasome regulato 67.7 2.4 8.3E-05 39.6 2.4 38 235-272 358-395 (445)
314 3cta_A Riboflavin kinase; stru 67.3 5.2 0.00018 33.5 4.2 56 216-271 7-62 (230)
315 3k81_C MP18 RNA editing comple 66.7 9.3 0.00032 30.9 5.3 63 69-133 21-102 (164)
316 2xzm_8 RPS25E,; ribosome, tran 66.6 5.7 0.0002 31.2 3.9 49 217-268 45-95 (143)
317 4dni_A Fusion protein of RNA-e 65.4 25 0.00086 30.4 8.3 79 68-148 28-128 (257)
318 1qzz_A RDMB, aclacinomycin-10- 65.2 8.8 0.0003 34.1 5.6 54 217-278 37-92 (374)
319 1l3l_A Transcriptional activat 65.1 11 0.00037 31.5 5.8 41 213-261 173-213 (234)
320 3maj_A DNA processing chain A; 64.8 8.8 0.0003 35.3 5.5 49 214-269 326-374 (382)
321 2ga1_A Protein of unknown func 64.8 9 0.00031 28.6 4.6 35 220-262 56-91 (106)
322 2oz6_A Virulence factor regula 64.5 6.6 0.00023 31.4 4.2 33 236-268 164-196 (207)
323 4esb_A Transcriptional regulat 64.3 4.7 0.00016 30.3 3.0 49 216-271 9-63 (115)
324 3ryp_A Catabolite gene activat 64.2 6.9 0.00023 31.3 4.3 33 236-268 167-199 (210)
325 2q0o_A Probable transcriptiona 64.1 11 0.00036 31.6 5.6 41 213-261 175-215 (236)
326 4ev0_A Transcription regulator 64.1 6.7 0.00023 31.5 4.2 34 235-268 162-195 (216)
327 1tw3_A COMT, carminomycin 4-O- 63.7 8 0.00027 34.3 5.0 54 217-278 40-93 (360)
328 2zcw_A TTHA1359, transcription 63.5 7.2 0.00025 31.2 4.3 32 237-268 147-178 (202)
329 2v7f_A RPS19, RPS19E SSU ribos 63.5 4.2 0.00014 32.4 2.7 31 239-269 70-114 (150)
330 4b4t_R RPN7, 26S proteasome re 63.3 3.5 0.00012 38.2 2.5 38 235-272 346-383 (429)
331 3dv8_A Transcriptional regulat 62.7 7.5 0.00026 31.4 4.3 32 236-267 169-200 (220)
332 1or7_A Sigma-24, RNA polymeras 62.4 11 0.00037 29.9 5.1 40 213-259 140-179 (194)
333 1s7o_A Hypothetical UPF0122 pr 62.0 11 0.00039 28.1 4.8 40 213-259 22-61 (113)
334 3iwz_A CAP-like, catabolite ac 61.9 7.8 0.00027 31.5 4.3 32 237-268 188-219 (230)
335 2p5k_A Arginine repressor; DNA 61.9 12 0.00043 24.0 4.5 37 221-266 10-51 (64)
336 3e97_A Transcriptional regulat 61.6 8 0.00027 31.6 4.3 39 236-276 175-213 (231)
337 1xma_A Predicted transcription 61.6 12 0.0004 29.3 5.0 49 216-271 41-97 (145)
338 2b29_A Replication protein A 7 60.7 52 0.0018 24.9 9.6 64 86-149 42-107 (123)
339 3b02_A Transcriptional regulat 60.7 6.5 0.00022 31.4 3.5 31 237-267 140-170 (195)
340 3lmm_A Uncharacterized protein 60.3 1.8 6.2E-05 42.1 0.0 48 216-269 516-563 (583)
341 2gau_A Transcriptional regulat 59.9 8.8 0.0003 31.3 4.2 34 235-268 179-212 (232)
342 3la7_A Global nitrogen regulat 59.8 8.8 0.0003 31.9 4.3 33 236-268 193-225 (243)
343 3gwz_A MMCR; methyltransferase 59.7 9 0.00031 34.4 4.6 42 236-278 71-113 (369)
344 2qlz_A Transcription factor PF 59.5 14 0.00048 31.4 5.5 46 217-269 166-211 (232)
345 3pfi_A Holliday junction ATP-d 59.5 11 0.00038 32.9 5.1 55 213-271 260-315 (338)
346 3fx3_A Cyclic nucleotide-bindi 59.4 9.4 0.00032 31.2 4.4 39 237-278 179-217 (237)
347 2fmy_A COOA, carbon monoxide o 59.3 9.1 0.00031 31.0 4.2 33 236-268 167-199 (220)
348 1pdn_C Protein (PRD paired); p 58.6 14 0.00048 26.9 4.8 43 216-266 21-63 (128)
349 3d0s_A Transcriptional regulat 58.6 9.5 0.00033 31.0 4.2 33 236-268 177-209 (227)
350 2l0k_A Stage III sporulation p 58.5 7.9 0.00027 28.1 3.2 36 217-259 8-43 (93)
351 1xjv_A Protection of telomeres 57.9 30 0.001 30.2 7.6 56 71-129 155-239 (294)
352 1fsh_A Dishevelled-1; three-he 57.9 14 0.00049 27.3 4.6 38 239-276 57-96 (105)
353 1t6s_A Conserved hypothetical 57.6 10 0.00035 30.5 4.1 29 234-262 20-50 (162)
354 1rp3_A RNA polymerase sigma fa 57.2 15 0.00053 29.9 5.3 40 212-258 186-225 (239)
355 1jko_C HIN recombinase, DNA-in 56.5 13 0.00043 22.4 3.6 34 218-259 11-44 (52)
356 3qp6_A CVIR transcriptional re 56.5 17 0.00057 31.2 5.5 41 213-261 197-237 (265)
357 4b4t_Q 26S proteasome regulato 56.5 5.3 0.00018 35.4 2.4 38 235-272 355-392 (434)
358 2xvs_A Tetratricopeptide repea 56.4 37 0.0013 27.4 7.1 69 38-126 57-128 (166)
359 3clo_A Transcriptional regulat 56.3 17 0.00059 30.8 5.6 41 212-260 196-236 (258)
360 3kcc_A Catabolite gene activat 56.3 11 0.00037 31.7 4.3 33 236-268 217-249 (260)
361 3u5c_Z RP45, S31, YS23, 40S ri 56.2 5.8 0.0002 29.8 2.2 35 234-268 57-91 (108)
362 3e6c_C CPRK, cyclic nucleotide 56.2 11 0.00038 31.3 4.3 33 236-268 177-209 (250)
363 3c3w_A Two component transcrip 55.9 18 0.00061 29.5 5.5 41 213-261 149-189 (225)
364 3eyi_A Z-DNA-binding protein 1 55.9 8.7 0.0003 26.5 2.8 51 214-272 7-59 (72)
365 3dkw_A DNR protein; CRP-FNR, H 55.9 7.9 0.00027 31.4 3.3 34 235-268 177-210 (227)
366 2x48_A CAG38821; archeal virus 55.4 12 0.0004 23.5 3.4 24 235-258 30-53 (55)
367 2dql_A PEX protein; circadian 54.9 12 0.0004 28.0 3.8 52 216-271 21-77 (115)
368 3f2g_A Alkylmercury lyase; MER 54.6 18 0.00063 30.5 5.3 41 215-261 21-61 (220)
369 3lmm_A Uncharacterized protein 54.5 11 0.00038 36.5 4.4 48 215-268 429-481 (583)
370 2zfw_A PEX; five alpha-helices 53.7 18 0.0006 28.5 4.8 53 220-279 48-115 (148)
371 3lsg_A Two-component response 53.6 18 0.00061 25.8 4.6 41 217-260 3-43 (103)
372 1zg3_A Isoflavanone 4'-O-methy 53.6 9.8 0.00033 33.9 3.7 57 217-278 31-99 (358)
373 3dfg_A Xcrecx, regulatory prot 53.6 12 0.00042 29.7 3.9 52 214-276 16-70 (162)
374 3mcz_A O-methyltransferase; ad 53.4 14 0.00047 32.6 4.6 41 236-278 56-96 (352)
375 1a04_A Nitrate/nitrite respons 53.1 21 0.00071 28.6 5.4 42 213-262 154-195 (215)
376 3kf8_B Protein TEN1; OB fold; 52.5 75 0.0026 24.2 9.6 87 70-163 23-114 (123)
377 4g6q_A Putative uncharacterize 51.9 18 0.00061 29.2 4.7 47 215-268 22-69 (182)
378 2qen_A Walker-type ATPase; unk 51.7 30 0.001 29.7 6.5 55 216-279 282-341 (350)
379 3l4g_A Phenylalanyl-tRNA synth 51.6 3.1 0.00011 39.8 0.0 59 216-279 5-65 (508)
380 3l7w_A Putative uncharacterize 50.8 24 0.00081 25.8 4.9 49 216-271 9-61 (108)
381 3kfw_X Uncharacterized protein 50.8 29 0.00098 29.8 6.0 56 217-278 5-63 (247)
382 3oio_A Transcriptional regulat 50.1 26 0.00088 25.4 5.0 41 216-260 7-47 (113)
383 3f8b_A Transcriptional regulat 49.9 30 0.001 25.7 5.4 48 217-271 13-68 (116)
384 1k78_A Paired box protein PAX5 48.7 24 0.00082 26.9 4.9 42 216-265 36-77 (149)
385 3o2p_E Cell division control p 48.6 16 0.00056 26.2 3.5 57 217-275 24-84 (88)
386 1o5l_A Transcriptional regulat 47.7 4.3 0.00015 33.0 0.3 32 236-267 164-195 (213)
387 3klo_A Transcriptional regulat 47.7 29 0.001 28.0 5.5 42 213-262 159-200 (225)
388 3e0j_A DNA polymerase subunit 47.6 75 0.0026 29.9 8.8 36 90-132 139-174 (476)
389 2bgc_A PRFA; bacterial infecti 47.5 14 0.00048 30.4 3.5 33 236-268 169-202 (238)
390 1fp1_D Isoliquiritigenin 2'-O- 47.3 11 0.00038 33.7 3.0 59 218-278 46-117 (372)
391 3mkl_A HTH-type transcriptiona 47.3 36 0.0012 24.9 5.5 41 215-259 6-46 (120)
392 4a6d_A Hydroxyindole O-methylt 47.2 20 0.00068 32.0 4.7 46 217-267 29-74 (353)
393 3hhh_A Transcriptional regulat 47.2 33 0.0011 25.5 5.3 48 216-270 13-66 (116)
394 1u5t_B Defective in vacuolar p 47.0 8.1 0.00028 31.3 1.8 47 217-268 100-152 (169)
395 2e1n_A PEX, period extender; c 46.7 24 0.00084 27.3 4.6 50 218-271 36-89 (138)
396 2k9l_A RNA polymerase sigma fa 46.4 31 0.0011 23.7 4.6 25 237-261 49-73 (76)
397 1cf7_A Protein (transcription 45.3 19 0.00066 25.0 3.4 58 213-275 11-69 (76)
398 1fp2_A Isoflavone O-methyltran 44.4 13 0.00044 33.0 2.9 57 217-278 37-97 (352)
399 3e3v_A Regulatory protein RECX 43.8 15 0.00051 29.7 3.0 50 216-276 19-71 (177)
400 2gmg_A Hypothetical protein PF 43.5 20 0.0007 26.6 3.4 39 216-261 11-53 (105)
401 2v9v_A Selenocysteine-specific 43.2 39 0.0013 25.2 5.3 46 219-269 5-50 (135)
402 2esh_A Conserved hypothetical 43.2 13 0.00045 27.6 2.4 49 216-271 13-70 (118)
403 3p9c_A Caffeic acid O-methyltr 42.6 14 0.00046 33.2 2.8 58 217-278 41-110 (364)
404 1u78_A TC3 transposase, transp 42.5 31 0.0011 25.6 4.5 40 217-264 11-50 (141)
405 2ozu_A Histone acetyltransfera 42.4 20 0.00069 31.4 3.7 41 217-261 199-239 (284)
406 2k6x_A Sigma-A, RNA polymerase 42.4 19 0.00065 24.6 2.9 50 215-268 5-61 (72)
407 3mn2_A Probable ARAC family tr 42.2 28 0.00096 24.9 4.1 40 217-260 3-42 (108)
408 1yio_A Response regulatory pro 41.6 44 0.0015 26.3 5.6 41 213-261 142-182 (208)
409 3iz6_V 40S ribosomal protein S 41.5 5.2 0.00018 30.1 -0.2 35 235-269 59-93 (108)
410 3d5l_A Regulatory protein RECX 40.7 25 0.00085 29.4 4.0 50 216-276 62-114 (221)
411 2k9m_A RNA polymerase sigma fa 40.5 66 0.0023 24.5 6.1 45 214-261 17-64 (130)
412 1ldj_A Cullin homolog 1, CUL-1 40.3 45 0.0015 33.2 6.4 48 214-267 587-634 (760)
413 1p2f_A Response regulator; DRR 39.6 29 0.001 27.8 4.2 46 213-262 145-193 (220)
414 2ns0_A Hypothetical protein; r 39.3 60 0.0021 23.1 5.2 51 216-269 7-62 (85)
415 2qc0_A Uncharacterized protein 39.2 22 0.00077 32.2 3.7 46 218-269 299-344 (373)
416 3oou_A LIN2118 protein; protei 38.6 40 0.0014 24.1 4.4 41 216-260 5-45 (108)
417 2cpg_A REPA protein, transcrip 38.3 42 0.0014 19.9 3.9 24 239-262 17-41 (45)
418 1ug2_A 2610100B20RIK gene prod 38.0 58 0.002 23.6 4.9 43 216-262 39-82 (95)
419 2z99_A Putative uncharacterize 37.5 31 0.001 29.1 4.0 28 235-262 29-56 (219)
420 2jn6_A Protein CGL2762, transp 37.4 49 0.0017 23.2 4.7 42 217-264 10-51 (97)
421 2k9s_A Arabinose operon regula 37.1 53 0.0018 23.4 4.9 39 218-259 5-43 (107)
422 3htu_A Vacuolar protein-sortin 37.0 78 0.0027 22.2 5.4 53 215-269 8-70 (79)
423 2hgc_A YJCQ protein; SR346, st 36.7 24 0.00084 26.1 2.9 25 243-267 23-47 (102)
424 3tdu_C Cullin-1, CUL-1; E2:E3, 36.0 24 0.00083 24.6 2.7 48 217-270 12-67 (77)
425 1xrx_A SEQA protein; protein f 35.8 34 0.0012 21.6 3.0 34 216-252 5-39 (50)
426 3ri2_A Transcriptional regulat 35.8 27 0.00093 26.4 3.2 50 217-271 22-73 (123)
427 1hst_A Histone H5; chromosomal 35.8 87 0.003 22.3 5.7 52 215-269 8-66 (90)
428 3dpl_C Cullin-5; ubiquitin, NE 35.7 41 0.0014 30.5 4.9 46 214-263 197-242 (382)
429 2elh_A CG11849-PA, LD40883P; s 35.6 51 0.0018 22.8 4.5 39 216-262 26-64 (87)
430 3to7_A Histone acetyltransfera 35.6 28 0.00095 30.4 3.5 40 217-261 194-233 (276)
431 2oqr_A Sensory transduction pr 34.9 35 0.0012 27.5 4.0 45 213-261 156-205 (230)
432 3elk_A Putative transcriptiona 34.6 24 0.00083 26.3 2.7 48 217-271 15-68 (117)
433 1bl0_A Protein (multiple antib 34.6 49 0.0017 24.6 4.5 41 216-260 11-51 (129)
434 3c1d_A Protein ORAA, regulator 34.4 38 0.0013 26.6 4.0 49 217-276 7-68 (159)
435 2gwr_A DNA-binding response re 34.3 44 0.0015 27.2 4.6 45 213-261 153-202 (238)
436 1ust_A Histone H1; DNA binding 34.1 84 0.0029 22.5 5.5 52 215-269 8-69 (93)
437 2jqo_A Hypothetical protein YO 34.0 41 0.0014 25.0 3.7 67 70-140 11-95 (108)
438 3m6z_A Topoisomerase V; helix- 33.8 35 0.0012 28.8 3.7 35 214-254 181-215 (380)
439 2ou2_A Histone acetyltransfera 33.6 42 0.0014 29.3 4.3 45 217-261 192-237 (280)
440 3h5n_A MCCB protein; ubiquitin 33.4 42 0.0014 30.1 4.5 33 236-268 50-83 (353)
441 1rr7_A Middle operon regulator 33.0 41 0.0014 25.7 3.8 27 236-262 92-118 (129)
442 2ve8_A FTSK, DNA translocase F 32.6 76 0.0026 21.9 4.7 47 215-267 9-55 (73)
443 2glo_A Brinker CG9653-PA; prot 32.6 43 0.0015 21.3 3.4 35 216-258 9-47 (59)
444 1jb7_A Telomere-binding protei 32.3 1.5E+02 0.0051 28.0 8.3 54 71-129 222-276 (495)
445 3kor_A Possible Trp repressor; 32.0 49 0.0017 25.1 4.0 27 235-261 74-100 (119)
446 2k9i_A Plasmid PRN1, complete 31.9 46 0.0016 20.6 3.4 21 242-262 27-48 (55)
447 2kif_A O6-methylguanine-DNA me 31.9 82 0.0028 23.3 5.2 42 215-259 2-45 (108)
448 1uss_A Histone H1; DNA binding 31.6 73 0.0025 22.5 4.7 52 215-269 8-70 (88)
449 2fna_A Conserved hypothetical 31.1 86 0.0029 26.7 6.1 55 214-278 288-348 (357)
450 2pq8_A Probable histone acetyl 30.9 37 0.0013 29.7 3.5 40 217-261 194-233 (278)
451 1lva_A Selenocysteine-specific 29.8 66 0.0022 27.3 5.0 55 215-269 65-122 (258)
452 3g2b_A Coenzyme PQQ synthesis 29.6 51 0.0017 23.7 3.6 46 213-266 40-93 (95)
453 2q1z_A RPOE, ECF SIGE; ECF sig 29.6 9.5 0.00033 30.0 -0.4 40 213-259 135-174 (184)
454 1hqc_A RUVB; extended AAA-ATPa 29.6 64 0.0022 27.5 5.0 54 213-270 244-299 (324)
455 4ad9_A Lactb2, beta-lactamase- 29.5 95 0.0032 26.1 6.0 57 217-277 221-287 (289)
456 2co5_A Viral protein F93; vira 29.1 63 0.0022 23.3 4.1 62 216-279 9-75 (99)
457 2jrt_A Uncharacterized protein 29.0 92 0.0032 22.4 4.9 31 235-265 48-78 (95)
458 1uhm_A Histone H1, histone HHO 28.7 1.2E+02 0.0041 20.8 5.4 52 215-269 5-66 (78)
459 3t5x_A PCI domain-containing p 28.1 21 0.00072 29.5 1.4 40 235-274 140-185 (203)
460 4b4t_O 26S proteasome regulato 28.1 28 0.00096 31.7 2.4 39 234-272 305-343 (393)
461 3ebe_A Protein MCM10 homolog; 28.0 2E+02 0.0068 23.6 7.4 77 40-128 34-119 (200)
462 2w7n_A TRFB transcriptional re 27.9 61 0.0021 23.8 3.8 27 235-261 33-59 (101)
463 2k27_A Paired box protein PAX- 27.7 22 0.00076 27.5 1.5 42 216-265 29-70 (159)
464 1l9z_H Sigma factor SIGA; heli 27.7 73 0.0025 29.6 5.2 42 213-257 375-416 (438)
465 1yg2_A Gene activator APHA; vi 27.5 51 0.0018 26.2 3.7 26 247-272 34-59 (179)
466 3u4z_A Telomerase-associated p 27.4 1.6E+02 0.0055 20.6 9.4 68 71-140 13-83 (109)
467 1l0o_C Sigma factor; bergerat 26.9 13 0.00046 30.2 0.0 40 213-259 198-237 (243)
468 2vl6_A SSO MCM N-TER, minichro 26.7 2E+02 0.0067 24.4 7.6 34 115-148 222-266 (268)
469 2lky_A Uncharacterized protein 26.7 91 0.0031 23.4 4.6 47 215-265 7-58 (112)
470 3mxn_A RECQ-mediated genome in 26.5 1.3E+02 0.0043 24.0 5.7 37 70-106 37-79 (157)
471 2z0t_A Putative uncharacterize 26.5 1.1E+02 0.0036 22.8 5.0 49 93-153 15-63 (109)
472 1uxc_A FRUR (1-57), fructose r 26.2 62 0.0021 21.4 3.3 20 238-257 2-21 (65)
473 3n0r_A Response regulator; sig 25.9 72 0.0025 27.3 4.6 40 213-259 111-150 (286)
474 2pk2_A Cyclin-T1, protein TAT; 25.5 15 0.0005 33.3 0.0 7 38-44 310-316 (358)
475 3r0j_A Possible two component 25.2 81 0.0028 25.8 4.7 45 213-261 176-225 (250)
476 1wrj_A Methylated-DNA--protein 25.2 1.1E+02 0.0037 24.2 5.1 43 213-258 68-110 (156)
477 2do7_A Cullin-4B, CUL-4B; heli 25.2 1.2E+02 0.004 22.2 4.9 54 216-271 31-86 (101)
478 1iuy_A Cullin-3 homologue; win 25.1 1.2E+02 0.0042 21.6 5.0 56 214-271 24-83 (92)
479 3bz6_A UPF0502 protein pspto_2 24.7 58 0.002 26.5 3.4 57 213-269 21-88 (183)
480 2o3f_A Putative HTH-type trans 24.7 24 0.00082 26.1 1.0 42 213-256 18-59 (111)
481 1neq_A DNA-binding protein NER 24.6 71 0.0024 21.6 3.5 31 219-256 12-42 (74)
482 2csb_A Topoisomerase V, TOP61; 24.6 61 0.0021 28.3 3.7 35 214-254 181-215 (519)
483 1k8b_A EIF-2-beta, probable tr 24.4 51 0.0018 21.1 2.5 30 237-266 12-42 (52)
484 2fq3_A Transcription regulator 24.0 1.2E+02 0.0042 22.2 4.9 52 216-271 51-102 (104)
485 3k9t_A Putative peptidase; str 23.9 58 0.002 30.3 3.7 45 218-267 389-433 (435)
486 1kgs_A DRRD, DNA binding respo 23.4 69 0.0023 25.4 3.8 45 213-261 151-200 (225)
487 3f1z_A Putative nucleic acid-b 23.1 2.2E+02 0.0074 20.6 5.9 63 71-136 50-121 (133)
488 3eqx_A FIC domain containing t 22.5 61 0.0021 29.4 3.5 44 220-269 301-344 (373)
489 2xub_A DNA-directed RNA polyme 22.3 74 0.0025 30.2 4.2 44 219-268 363-406 (534)
490 3kf6_B Protein TEN1; OB fold, 22.1 2.4E+02 0.0082 20.8 9.2 80 44-149 9-88 (105)
491 3iwf_A Transcription regulator 22.0 48 0.0016 24.3 2.3 47 213-261 14-60 (107)
492 3u58_A Tetrahymena TEB1 AB; te 21.7 2.8E+02 0.0097 21.5 10.3 68 71-140 131-201 (213)
493 2kvc_A Putative uncharacterize 21.7 74 0.0025 23.5 3.2 46 216-265 6-56 (103)
494 3egq_A TETR family transcripti 21.7 47 0.0016 25.0 2.3 33 216-252 4-40 (170)
495 1tmx_A Hydroxyquinol 1,2-dioxy 21.6 37 0.0013 29.9 1.8 31 238-268 42-72 (293)
496 1zug_A Phage 434 CRO protein; 21.6 1.2E+02 0.0042 19.0 4.2 22 235-256 15-36 (71)
497 3n9t_A PNPC; phospholipid bind 21.5 38 0.0013 29.8 1.9 32 238-269 38-69 (290)
498 3reo_A (ISO)eugenol O-methyltr 21.5 42 0.0014 29.9 2.2 59 217-278 42-112 (368)
499 3vlf_B 26S protease regulatory 21.5 1.5E+02 0.0052 20.4 4.8 40 217-258 5-45 (88)
500 3l09_A Putative transcriptiona 21.4 76 0.0026 27.4 3.8 48 217-269 24-78 (266)
No 1
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=100.00 E-value=1.7e-61 Score=435.10 Aligned_cols=256 Identities=27% Similarity=0.450 Sum_probs=120.5
Q ss_pred CCCCCCcCccccCCCCCCC-CCCCCCC-cccCCCCCceeeeeHHHHhhcccCCCCCCCeEECCEEEeeEEEEEEEEEeee
Q 023576 7 FDASNAFSGGGFMPSQPPQ-SADYPSS-TARSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEE 84 (280)
Q Consensus 7 ~~~~~~~~ggGf~~~~~~~-~~~~~~~-~~k~~~~~~~~PvtIkqi~~a~~~~~~~~~~~i~g~~i~~V~iVG~V~~~~~ 84 (280)
|++++.+++||||++++++ ++.++++ +++.++.++|+|||||||+++.++ ++.|+|+|++|++|+|||+|++++.
T Consensus 9 ~~~~~~~~~ggf~~~~~~~~~~~~~~~~~~~~~~~~~l~PvtIkqil~a~~~---d~~f~i~g~~i~~V~ivG~V~~i~~ 85 (270)
T 2pi2_A 9 YGSSSYGGAGGYTQSPGGFGSPAPSQAEKKSRARAQHIVPCTISQLLSATLV---DEVFRIGNVEISQVTIVGIIRHAEK 85 (270)
T ss_dssp --------------------------------CCCCCCEECCHHHHHHCEEE---TTEEEETTEEESEEEEEEEEEEEEE
T ss_pred cCCcCCCCCCCcccCCCCCCCCCCCCCccccCCCCCceEEEEHHHHhcCccC---CCcEEECCEEEEEEEEEEEEEEEEe
Confidence 7777778899999876643 2222222 333568899999999999999864 4689999999999999999999999
Q ss_pred cCCeeEEEEEcCCc-eEEEEEecccccChhhhccCCCCCEEEEEEEEeeeCCeeEEEEEEEeeCCCchHHHHHHHHHHHH
Q 023576 85 RASDVNFTLDDGTG-RVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYF 163 (280)
Q Consensus 85 ~~t~~~~~LdDgTG-~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f~~~~~i~~~~ir~v~d~Nei~~H~Le~i~~ 163 (280)
..+++.|+|+|+|| +|+|++|.+.+.+......|++|+||||+|+|+.|++++||++++||||+|+||+++|+|||+++
T Consensus 86 ~~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~g~~qi~i~~ir~v~d~nEi~~H~Le~i~~ 165 (270)
T 2pi2_A 86 APTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINA 165 (270)
T ss_dssp CSSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEETTEEEEEEEEEEECSCTHHHHHHHHHHHHH
T ss_pred ccceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecCCeeEEEEEEEEecCCHhHHHHHHHHHHHH
Confidence 99999999999999 89999998764322235789999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCchhHHHHHHhcCCCCCCCCCccCHHHHH
Q 023576 164 HLQNSKSQVQGFPSSQPQMVDSSLNTSARTGLSGYQTAPTNLSSQFGVDGLKDCDQMILDYLQQPSSSERERGVHVNELS 243 (280)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~ 243 (280)
||+++++.+.. +.... +.+.........+.. + .....+++++++++||++||++. .++|+|+++|+
T Consensus 166 hl~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~Vl~~i~~~~---~~~Gi~~~~I~ 231 (270)
T 2pi2_A 166 HMVLSKANSQP---SAGRA---PISNPGMSEAGNFGG----N-SFMPANGLTVAQNQVLNLIKACP---RPEGLNFQDLK 231 (270)
T ss_dssp HHHHHHHTCCC---------------------------------------------------------------------
T ss_pred HHHHccCCccc---cccCC---CcCCCCcccccccCc----c-cccCCCCCCHHHHHHHHHHHhCC---CccCCCHHHHH
Confidence 99999887641 10000 000000000001110 0 00112357889999999999864 47899999999
Q ss_pred HHh-CCCHHHHHHHHHHHHhCCeeeecCCCccccccC
Q 023576 244 EQL-KIPQKKIMDSIASLENEGLIYSTIDEFHYKFAR 279 (280)
Q Consensus 244 ~~l-~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t~ 279 (280)
++| ++++++|++||++|++|||||+|+||+|||+||
T Consensus 232 ~~l~~~~~~~v~~al~~L~~eG~IYsTiDd~h~k~t~ 268 (270)
T 2pi2_A 232 NQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTD 268 (270)
T ss_dssp -------------------------------------
T ss_pred HHhcCCCHHHHHHHHHHHHhCCEEeccccccceeecc
Confidence 999 699999999999999999999999999999997
No 2
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=100.00 E-value=8.2e-40 Score=264.19 Aligned_cols=130 Identities=31% Similarity=0.550 Sum_probs=113.8
Q ss_pred CCCceeeeeHHHHhhcccCCCCCCCeEECCEEEeeEEEEEEEEEeeecCCeeEEEEEcCCc-eEEEEEecccccChhhhc
Q 023576 38 DSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTG-RVVCKRWASEVFDTREME 116 (280)
Q Consensus 38 ~~~~~~PvtIkqi~~a~~~~~~~~~~~i~g~~i~~V~iVG~V~~~~~~~t~~~~~LdDgTG-~I~~~~w~~~~~~~~~~~ 116 (280)
+.++|+|||||||++|.++ ++.|+++|+++++|+|||+|++++..++++.|+|+|+|| .|+|++|.+.+.+.....
T Consensus 2 r~~~l~PvtIkqil~a~~~---~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~ 78 (132)
T 3kdf_D 2 RAQHIVPCTISQLLSATLV---DEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENT 78 (132)
T ss_dssp ---CCEECCHHHHHTCEES---SSCEEETTEECCEEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEEC---------C
T ss_pred CCCceeeEEHHHHhhCccC---CCcEEECCEEEEEEEEEEEEEEEEEcCCeEEEEEECCCCCEEEEEEEccCCCcccccc
Confidence 5789999999999999875 468999999999999999999999999999999999999 999999988764434467
Q ss_pred cCCCCCEEEEEEEEeeeCCeeEEEEEEEeeCCCchHHHHHHHHHHHHHHHhcCC
Q 023576 117 AIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSKS 170 (280)
Q Consensus 117 ~~~~G~yVrV~G~l~~f~~~~~i~~~~ir~v~d~Nei~~H~Le~i~~~l~~~~~ 170 (280)
.+++|+||||+|+++.|+++++|+++.|||++|+||+++|+|||+++||+++|.
T Consensus 79 ~~~~g~yVrV~G~l~~f~g~~qi~~~~ir~v~d~Nei~~H~Le~i~~hl~~~k~ 132 (132)
T 3kdf_D 79 VVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKA 132 (132)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCCCEEEEEEEEEeECCEEEEEEEEEEEcCCccHHHHHHHHHHHHHHeecCC
Confidence 899999999999999999999999999999999999999999999999999863
No 3
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=100.00 E-value=1.7e-39 Score=263.65 Aligned_cols=134 Identities=31% Similarity=0.632 Sum_probs=117.0
Q ss_pred cCCCCCceeeeeHHHHhhcccCCCCCCCeEECCEEEeeEEEEEEEEEeeecCCeeEEEEEcCCceEEEEEeccccc-Chh
Q 023576 35 RSRDSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVF-DTR 113 (280)
Q Consensus 35 k~~~~~~~~PvtIkqi~~a~~~~~~~~~~~i~g~~i~~V~iVG~V~~~~~~~t~~~~~LdDgTG~I~~~~w~~~~~-~~~ 113 (280)
|++..++|+|||||||++|.++. +++.|+++|++|++|+|||+|++++..++++.|+|+|+||.|+|++|.+.+. +..
T Consensus 2 ~~~~~~~l~PvtIkqil~a~~~~-~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~ 80 (136)
T 4gop_B 2 KKAGNNTLRPVTIRQILNAEQPH-PDAEFILDGAELGQLTFVAVVRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSS 80 (136)
T ss_dssp -----CCEEECCHHHHHHCBCCS-SSCCCBSSSSBCCEEEEEEEEEEEEECSSEEEEEEECSSCEEEEEEECC-------
T ss_pred CCCCCCcEEeEEHHHHhhccccC-CCCcEEECCEEEEEEEEEEEEEEEEecCCeEEEEEECCCCCEEEEEecccCCcccc
Confidence 45578999999999999998875 3578999999999999999999999999999999999999999999987543 222
Q ss_pred hhccCCCCCEEEEEEEEeeeCCeeEEEEEEEeeCCCchHHHHHHHHHHHHHHHhcC
Q 023576 114 EMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQNSK 169 (280)
Q Consensus 114 ~~~~~~~G~yVrV~G~l~~f~~~~~i~~~~ir~v~d~Nei~~H~Le~i~~~l~~~~ 169 (280)
..+.+++|+||||.|+++.|++++||+++.|||++|+||+++|+|||+++||+++|
T Consensus 81 ~~~~~~~g~yVrV~G~v~~f~g~~qi~~~~ir~v~d~Nei~~H~Le~i~~hl~~t~ 136 (136)
T 4gop_B 81 KASEIRNNVYVRVLGTLKSFQNRRSISSGHMRPVIDYNEVMFHRLEAVHAHLQVTR 136 (136)
T ss_dssp -CCSCCTTCEEEEEEEEEEETTEEEEEESEEEECSSHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCCCEEEEEEEEEEeCCEEEEEEEEEEECCCccHHHHHHHHHHHHHHhhcC
Confidence 46789999999999999999999999999999999999999999999999999975
No 4
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=99.91 E-value=1.6e-23 Score=173.04 Aligned_cols=130 Identities=14% Similarity=0.178 Sum_probs=110.4
Q ss_pred CCCceeeeeHHHHhhcccCCCC-CCCeEECCEEEeeEEEEEEEEEeeecCCeeEEEEEcCCc-eEEEEEecccccCh-hh
Q 023576 38 DSQGLVPVTVKMISEASHSGDD-KSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTG-RVVCKRWASEVFDT-RE 114 (280)
Q Consensus 38 ~~~~~~PvtIkqi~~a~~~~~~-~~~~~i~g~~i~~V~iVG~V~~~~~~~t~~~~~LdDgTG-~I~~~~w~~~~~~~-~~ 114 (280)
.-...+|+.|++|+...+...- ...+.+.|+||++|+|||+|+++++.++++.|+|||+|| .|+|++|.+...+. ..
T Consensus 14 t~~~~v~L~i~DI~~l~~~~~~~~~~~f~~n~PI~~V~IvGiVv~~~~~~~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~ 93 (159)
T 3kf6_A 14 TLSRWNPMFISDVHKISFHPHLQRYIGFWMGFPIRWIQIVGYIAAIDIYEGKHVLTVDDCSGMVLRVVFIIQDDFSMSKR 93 (159)
T ss_dssp --CCCCBCCHHHHTTCBCCCC---CCEEETTEEECEEEEEEEEEEEEEETTEEEEEEECSSSCEEEEEEEGGGCHHHHHH
T ss_pred chhheecchHHHHHhchhcCCCCCcceeECCeEEEEEEEEEEEEEEEEeCCEEEEEEecCCCCeEEEEEEccCCCCcccc
Confidence 3467899999999998665421 224478999999999999999999999999999999999 59999998864221 12
Q ss_pred hccCCCCCEEEEEEEEeeeCCeeEEEEEEEeeCCCchHHHHHHHHHHHHHHHh
Q 023576 115 MEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEVTCHYIECIYFHLQN 167 (280)
Q Consensus 115 ~~~~~~G~yVrV~G~l~~f~~~~~i~~~~ir~v~d~Nei~~H~Le~i~~~l~~ 167 (280)
...+.+|+||||.|+|+.|++++||.+++++++.|+|++..||.+++....++
T Consensus 94 ~~~l~~G~~VrV~G~v~~fr~~rqI~~~~i~~v~d~n~Ev~~W~~~~r~~~~l 146 (159)
T 3kf6_A 94 AISMSPGNVVCVFGKINSFRSEVELIAQSFEELRDPNDEWKAWQKRMRYKKNL 146 (159)
T ss_dssp HTTCCTTCEEEEEEEEECSSSSCEEEEEEEEEECSTHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEEEEEEeeCCEEEEEEEEEEECCCcHHHHHHHHHHHHHHHhC
Confidence 34589999999999999999999999999999999999999999999987664
No 5
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=99.37 E-value=1.5e-11 Score=105.38 Aligned_cols=126 Identities=10% Similarity=0.185 Sum_probs=96.6
Q ss_pred CceeeeeHHHHhhcccCC--------CCCCCeEECCEEEeeEEEEEEEEEeeecC--------CeeEEEEEcCCce---E
Q 023576 40 QGLVPVTVKMISEASHSG--------DDKSNFMINGLEITNVTLVGLVYNKEERA--------SDVNFTLDDGTGR---V 100 (280)
Q Consensus 40 ~~~~PvtIkqi~~a~~~~--------~~~~~~~i~g~~i~~V~iVG~V~~~~~~~--------t~~~~~LdDgTG~---I 100 (280)
..++|+.|++|+...... ...+.|.+.++||.+|+|+|+|+.++... .++.|+|||+||. |
T Consensus 47 ~~~vpL~I~DI~~l~~~~~~yg~~~~~~~~i~f~~NhPI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i 126 (220)
T 3kf8_A 47 DKTIPLFISDINNSPNLYGIYNYIADHLRHVVLVNNYPVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKI 126 (220)
T ss_dssp TSEEECCHHHHHTCCCTHHHHGGGGGGCTTCEEETTEEECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEE
T ss_pred CcccceEhHHhhhchhhhcccccccccCccEEEECCcccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceE
Confidence 579999999999764321 01347899999999999999999997655 4699999999995 7
Q ss_pred EEEEecccccCh-hhhccCCCCCEEEEEEEEeeeCC--------eeEEEEEEEeeC----CCchHHHHHHHHHHHHHH
Q 023576 101 VCKRWASEVFDT-REMEAIQDGMYVRLIGNLKSFQG--------KKQIVAFSVRPV----TNFDEVTCHYIECIYFHL 165 (280)
Q Consensus 101 ~~~~w~~~~~~~-~~~~~~~~G~yVrV~G~l~~f~~--------~~~i~~~~ir~v----~d~Nei~~H~Le~i~~~l 165 (280)
.|+.-....... -.......|..|+|.|.++.|++ .++|.+.+|+.+ .|+..+.-||-+++...-
T Consensus 127 ~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~~~r~~~~~~~~~~rei~ve~i~vl~~~~~dl~~Ei~~W~~~~~fR~ 204 (220)
T 3kf8_A 127 RVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYDSINVSKKPDRELKVSKITVLSHRPDGLHFEFEQWKKRMEFRK 204 (220)
T ss_dssp EEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEECCCSTTTTSCCCEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEecHHHhhccCccccccCCCeEEEEEEEEEeeccccccccccceEEEEEEEEEeccCCCcHHHHHHHHHHHHHHHH
Confidence 776543211000 00122457999999999999998 899999999999 566788889988887765
No 6
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=99.02 E-value=1.6e-08 Score=80.64 Aligned_cols=118 Identities=15% Similarity=0.222 Sum_probs=93.4
Q ss_pred CCceeeeeHHHHhhcccCCCCCCCeEEC-------CEEEeeEEEEEEEEEeeecCCeeEEEEEcCCceEEEEEecccccC
Q 023576 39 SQGLVPVTVKMISEASHSGDDKSNFMIN-------GLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFD 111 (280)
Q Consensus 39 ~~~~~PvtIkqi~~a~~~~~~~~~~~i~-------g~~i~~V~iVG~V~~~~~~~t~~~~~LdDgTG~I~~~~w~~~~~~ 111 (280)
....+.|.++||.++.+.. ...+.+. ..+++.|++-|+|+.. ++. .++|+|+||.+.+..-.+..
T Consensus 22 ~~PpvK~l~~QLr~~~~~~--~~~w~l~r~~~g~~~l~~s~VWmQG~VV~~-~~g---~~~LdDgTG~~~v~g~~~vp-- 93 (150)
T 3mxn_B 22 RSPPLKVLAEQLRRDAEGG--PGAWRLSRAAAGRGPLDLAAVWMQGRVVMA-DRG---EARLRDPSGDFSVRGLERVP-- 93 (150)
T ss_dssp SSCCEECCHHHHHHHEESC--TTCCEECCTTTTCCCEECSEEEEEEEEEEE-ETT---EEEEEETTEEEEEECGGGSC--
T ss_pred CCCcHHHHHHHHHHHhhCC--CceEEEEecccCCccceeEEEEEEeEEEEe-CCC---eEEEECCCceEEEeeccccC--
Confidence 4556788999999987642 4456554 3789999999999996 333 48999999999876543321
Q ss_pred hhhhccCCCCCEEEEEEEEeeeCCeeEEEEEEEeeCCC-chHHHHHHHHHHHHHH
Q 023576 112 TREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTN-FDEVTCHYIECIYFHL 165 (280)
Q Consensus 112 ~~~~~~~~~G~yVrV~G~l~~f~~~~~i~~~~ir~v~d-~Nei~~H~Le~i~~~l 165 (280)
.-..-++.|+||.|.|.+..-.....|.+.+|.-+++ ++...+|.|||+.+|-
T Consensus 94 -~g~p~l~~G~YVMV~G~v~~~s~eP~i~AvKm~DLS~~p~~E~mW~lEV~el~r 147 (150)
T 3mxn_B 94 -RGRPCLVPGKYVMVMGVVQACSPEPCLQAVKMTDLSDNPIHESMWELEVEDLHR 147 (150)
T ss_dssp -CCSCCCSTTCEEEEEEEEEECSSSCEEEEEEEEECCSCHHHHHHHHHHHHHHHT
T ss_pred -CCCcccCCCCEEEEEEEEEecCCCceEEEEEeeeCCCCcchHHHHHHHHHHHHh
Confidence 1123478999999999999988899999999999988 5788999999999873
No 7
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.71 E-value=1.4e-08 Score=78.98 Aligned_cols=81 Identities=17% Similarity=0.300 Sum_probs=62.6
Q ss_pred eeEEEEEEEEEe-ee-------c--CCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEEEE--eeeCCeeE
Q 023576 71 TNVTLVGLVYNK-EE-------R--ASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNL--KSFQGKKQ 138 (280)
Q Consensus 71 ~~V~iVG~V~~~-~~-------~--~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l--~~f~~~~~ 138 (280)
..|.++|+|.++ .. . ..+..++|.|.||.|++++|.+... ....+++|++|.|.|.+ ..|++++|
T Consensus 17 ~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~~---~~~~l~~G~vv~i~g~~v~~~f~g~~q 93 (115)
T 2k50_A 17 AETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENIK---LLKKFREGDVIRIKDVNIRGGFGGRKE 93 (115)
T ss_dssp CEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGGG---GGGTCCTTSEEEEEEEEECCCSSSSCE
T ss_pred CEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchhh---hhhcCCCCCEEEEEeeEEccccCCeEE
Confidence 356888888877 21 1 3688999999999999999976532 23579999999999999 66999999
Q ss_pred EEEEEEeeCCCchHHH
Q 023576 139 IVAFSVRPVTNFDEVT 154 (280)
Q Consensus 139 i~~~~ir~v~d~Nei~ 154 (280)
|.+...+.|....++-
T Consensus 94 L~~~~~~~i~~~~~~~ 109 (115)
T 2k50_A 94 AHLMPRSTVEVLDPLE 109 (115)
T ss_dssp EEECTTCCEEEESSCC
T ss_pred EEECCCceEEECCccc
Confidence 9997766655444443
No 8
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=98.67 E-value=1.2e-07 Score=74.27 Aligned_cols=73 Identities=23% Similarity=0.314 Sum_probs=59.0
Q ss_pred eEEEEEEEEEeee--------c-CCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEE-EEEeeeCCeeEEEE
Q 023576 72 NVTLVGLVYNKEE--------R-ASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLI-GNLKSFQGKKQIVA 141 (280)
Q Consensus 72 ~V~iVG~V~~~~~--------~-~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~-G~l~~f~~~~~i~~ 141 (280)
.|.++++|.++.. + ..+..++|.|.||+|++++|.+.+ +.+++|++|+|. |+++.|+++.+|++
T Consensus 14 ~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~~------~~~~~G~vv~i~~g~v~~~~g~~qL~i 87 (119)
T 1o7i_A 14 SVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA------GSIKEGQVVKIENAWTTAFKGQVQLNA 87 (119)
T ss_dssp SEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGT------TCCCTTCEEEEEEEEEEEETTEEEEEE
T ss_pred cEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECChh------hcCCCCCEEEEEeEEEEEeCCEEEEEE
Confidence 4666777766531 1 269999999999999999998753 358999999999 99999999999999
Q ss_pred EE---EeeCCCc
Q 023576 142 FS---VRPVTNF 150 (280)
Q Consensus 142 ~~---ir~v~d~ 150 (280)
.+ |.++.++
T Consensus 88 ~~~~~i~~~~~~ 99 (119)
T 1o7i_A 88 GSKTKIAEASED 99 (119)
T ss_dssp CTTCEEEECCCT
T ss_pred CCCEEEEEcCCc
Confidence 76 7776653
No 9
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=98.66 E-value=1e-07 Score=73.54 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=60.2
Q ss_pred eeEEEEEEEEEeeec---CCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEE-EEEeeeCCeeEEEEEEEee
Q 023576 71 TNVTLVGLVYNKEER---ASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLI-GNLKSFQGKKQIVAFSVRP 146 (280)
Q Consensus 71 ~~V~iVG~V~~~~~~---~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~-G~l~~f~~~~~i~~~~ir~ 146 (280)
..|.++++|+++... ..+...+|.|.||+|.++.|.+.. ...+++|+.|+|. |.++.|+++.+|++.+...
T Consensus 16 ~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~~-----~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~~~ 90 (109)
T 2kbn_A 16 QWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNAE-----LPLLEQGESYLLRSVVVGEYNDRFQVQVNKNSS 90 (109)
T ss_dssp CEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGGC-----CCCCCTTCEEEEEEEEEEEETTEEEEEECSSSE
T ss_pred CcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECccc-----ccccCCCCEEEEEEEEEEEECCEEEEEECCceE
Confidence 467888999887642 357788999999999999998543 4579999999999 8999999999999976554
Q ss_pred CC
Q 023576 147 VT 148 (280)
Q Consensus 147 v~ 148 (280)
|+
T Consensus 91 I~ 92 (109)
T 2kbn_A 91 IE 92 (109)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 10
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.65 E-value=9.2e-08 Score=73.43 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=60.4
Q ss_pred eEEEEEEEEEeee-----cC---CeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEE-EEEeeeCCeeEEEEE
Q 023576 72 NVTLVGLVYNKEE-----RA---SDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLI-GNLKSFQGKKQIVAF 142 (280)
Q Consensus 72 ~V~iVG~V~~~~~-----~~---t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~-G~l~~f~~~~~i~~~ 142 (280)
.|.+++.|.++.+ .. .+..++|.|.||+|.+++|.+. +++|+.|+|. |.++.|+++.+|++.
T Consensus 15 ~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~~---------l~~Gdvv~i~ng~v~~~~g~~~L~v~ 85 (106)
T 2k75_A 15 YVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQ---------LQDSDVVRIDNARVAQFNGYLSLSVG 85 (106)
T ss_dssp EEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESSC---------CCTTEEEEEEEEEEEEETTEEEEEEC
T ss_pred eEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcCc---------cCCCCEEEEEeeEEeEECCEEEEEEC
Confidence 3555666655432 22 2889999999999999999763 9999999999 999999999999985
Q ss_pred ---EEeeCCCchHHHHH
Q 023576 143 ---SVRPVTNFDEVTCH 156 (280)
Q Consensus 143 ---~ir~v~d~Nei~~H 156 (280)
.|.++.++.++-+|
T Consensus 86 ~~~~I~~~~~~~~~~~~ 102 (106)
T 2k75_A 86 DSSRIESVNVNIPLEHH 102 (106)
T ss_dssp TTSEEEECCSCCCCSCC
T ss_pred CcEEEEECCCCCccccc
Confidence 48888887776544
No 11
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=98.34 E-value=3.2e-06 Score=63.66 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=56.0
Q ss_pred eeEEEEEEEEEeee-----c-----CCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEEEEeeeCCeeEEE
Q 023576 71 TNVTLVGLVYNKEE-----R-----ASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIV 140 (280)
Q Consensus 71 ~~V~iVG~V~~~~~-----~-----~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f~~~~~i~ 140 (280)
..|.|+|+|.++.. + .....++|.|.||+|.+..|.+... . .+++|++|+|.|.++.|.+..+|+
T Consensus 12 ~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~~----~-~i~~Gdvv~i~g~v~~~~~~~el~ 86 (97)
T 3e0e_A 12 LSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELAD----F-EVKKGDIAEVSGYVKQGYSGLEIS 86 (97)
T ss_dssp EEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGGG----C-CCCTTCEEEEEEEEEEC--CEEEE
T ss_pred CcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCccc----c-ccCCCCEEEEEEEEEEcCCeEEEE
Confidence 46788888888641 1 1377899999999999999987642 1 699999999999999999999998
Q ss_pred EEEEeeC
Q 023576 141 AFSVRPV 147 (280)
Q Consensus 141 ~~~ir~v 147 (280)
+-+--.|
T Consensus 87 ~g~~~~i 93 (97)
T 3e0e_A 87 VDNIGII 93 (97)
T ss_dssp EEEEEEE
T ss_pred ECCCcEE
Confidence 8765443
No 12
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=98.02 E-value=4.5e-05 Score=58.18 Aligned_cols=72 Identities=24% Similarity=0.304 Sum_probs=56.4
Q ss_pred eeEEEEEEEEEeee-----c-----CCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEEEEeeeC-CeeEE
Q 023576 71 TNVTLVGLVYNKEE-----R-----ASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQ-GKKQI 139 (280)
Q Consensus 71 ~~V~iVG~V~~~~~-----~-----~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f~-~~~~i 139 (280)
..|.|+|+|.++.. + .....++|.|.||+|.+.+|.+... . .+++|+.|+|.|.++.+. +.++|
T Consensus 15 ~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~----~-~l~~Gdvv~i~g~vk~~~~g~~eL 89 (105)
T 3dm3_A 15 MTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTD----I-DVGRGDYVRVRGYIREGYYGGLEC 89 (105)
T ss_dssp EEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGG----S-CCCTTCEEEEEEEEEECTTSSEEE
T ss_pred CeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECcccc----c-ccCCCCEEEEEEEEEEccCCCEEE
Confidence 57888888877642 1 1356799999999999999987652 1 799999999999999984 58899
Q ss_pred EEEEEeeC
Q 023576 140 VAFSVRPV 147 (280)
Q Consensus 140 ~~~~ir~v 147 (280)
++-+--.|
T Consensus 90 ~~g~~~~i 97 (105)
T 3dm3_A 90 TANYVEIL 97 (105)
T ss_dssp EEEEEEEE
T ss_pred EeCCceEE
Confidence 88664444
No 13
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=97.81 E-value=0.00052 Score=52.52 Aligned_cols=83 Identities=18% Similarity=0.158 Sum_probs=62.5
Q ss_pred eeeHHHHhhcccCCCCCCCeEECCEEEeeEEEEEEEEEeeecCCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCE
Q 023576 44 PVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123 (280)
Q Consensus 44 PvtIkqi~~a~~~~~~~~~~~i~g~~i~~V~iVG~V~~~~~~~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~y 123 (280)
..|++|++++. ++ ..|.|-|.|+..-... .|...|+||+|.+.+=.+. ..-..+.+++.
T Consensus 25 ~~TV~~a~~~~----Dd----------~~V~L~G~Iv~~~~~d---~Y~F~D~TG~I~VeId~~~----w~g~~v~p~~~ 83 (109)
T 1nnx_A 25 VTTVESAKSLR----DD----------TWVTLRGNIVERISDD---LYVFKDASGTINVDIDHKR----WNGVTVTPKDT 83 (109)
T ss_dssp CCCHHHHTTSC----SS----------EEEEEEEEEEEEEETT---EEEEEETTEEEEEECCGGG----STTCCCCTTSC
T ss_pred eEeHHHHhhCc----CC----------CeEEEEEEEEEEeCCC---eEEEECCCccEEEEEChhh----cCCcccCCCCE
Confidence 47899998752 22 6788999998876555 5789999999998852111 11246788999
Q ss_pred EEEEEEEeeeCCeeEEEEEEEeeC
Q 023576 124 VRLIGNLKSFQGKKQIVAFSVRPV 147 (280)
Q Consensus 124 VrV~G~l~~f~~~~~i~~~~ir~v 147 (280)
|||.|.+..--....|-+.+|..+
T Consensus 84 Vri~GevDkd~~~~eIdV~~i~~~ 107 (109)
T 1nnx_A 84 VEIQGEVDKDWNSVEIDVKQIRKV 107 (109)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEEECCCCCceEEEEEEEEEc
Confidence 999999998556778888888776
No 14
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=97.46 E-value=0.00092 Score=53.77 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=44.9
Q ss_pred CeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEE-EEeeeCCeeEEEEEEEeeC
Q 023576 87 SDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIG-NLKSFQGKKQIVAFSVRPV 147 (280)
Q Consensus 87 t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G-~l~~f~~~~~i~~~~ir~v 147 (280)
.-....|-|.||+|....|.+. .+.+++|+.|++.+ .++.|++...|.+-+--.|
T Consensus 62 ~V~~~lVgDeTG~I~ftlW~e~------~~~l~~Gd~v~i~na~v~~~~G~~~L~vgk~g~I 117 (145)
T 1wjj_A 62 RIVECLIGDETGCILFTARNDQ------VDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRI 117 (145)
T ss_dssp CCEEEEEECSSCEEEEEECTTH------HHHTCTTCEEEEEEEEEEEETTEEEEEECTTCCB
T ss_pred eEEEEEEEcCCcEEEEEEecCC------cCcCCCCCEEEEeccEEEeECCEEEEEECCCEEE
Confidence 3567899999999999999763 34588999999987 6889999999988653333
No 15
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=97.28 E-value=0.001 Score=62.01 Aligned_cols=78 Identities=19% Similarity=0.212 Sum_probs=63.2
Q ss_pred EEEeeEEEEEEEEEe-e-ecCCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEEEEeeeCCeeEEEEEEEe
Q 023576 68 LEITNVTLVGLVYNK-E-ERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVR 145 (280)
Q Consensus 68 ~~i~~V~iVG~V~~~-~-~~~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f~~~~~i~~~~ir 145 (280)
.+...+++.|.|.+. . .....+.|+|+|+++.|+|..|.....-......+.+||.|.|.|.++. + +|++.+++
T Consensus 282 ~~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~G~v~~--g--tLnvEk~~ 357 (402)
T 3au7_A 282 ENYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVYGSMKK--D--TINLEKIQ 357 (402)
T ss_dssp CTTCEEEEEEEEEEEEEEETTTEEEEEEEETTEEEEEEECGGGTTHHHHHTTCCTTCEEEEEEEEET--T--EEEEEEEE
T ss_pred ccCceEEEEEEEecCcEeccCceEEEEEEcCCCEEEEEEEccchHHHHHHhcCCCCCEEEEEEeecC--C--EEEEEEEE
Confidence 455789999999988 4 3556899999999999999999865422233567899999999999888 3 99999988
Q ss_pred eCCC
Q 023576 146 PVTN 149 (280)
Q Consensus 146 ~v~d 149 (280)
++.-
T Consensus 358 v~~l 361 (402)
T 3au7_A 358 IVEL 361 (402)
T ss_dssp EEEC
T ss_pred Eccc
Confidence 8754
No 16
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.10 E-value=0.00071 Score=49.02 Aligned_cols=52 Identities=27% Similarity=0.454 Sum_probs=45.5
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.+++++||++|++.+ ....++..+|+++|+++...|+.+|..|..+|.|...
T Consensus 9 ~~~~~~IL~~L~~~~---pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 9 QDQEQRILKFLEELG---EGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHHHHHC---TTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHHHcC---CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 357889999999753 3457999999999999999999999999999999864
No 17
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=97.03 E-value=0.00061 Score=48.80 Aligned_cols=52 Identities=27% Similarity=0.440 Sum_probs=46.0
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecC
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTI 270 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTi 270 (280)
+++.+||++|++.+ .+.+++..+|+++|+++...|+..|..|..+|.|+..-
T Consensus 14 ~~~~~IL~~L~~~~---~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 14 DQEQRILKFLEELG---EGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHHHHC---SSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHHcC---CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC
Confidence 46788999999863 34589999999999999999999999999999998864
No 18
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.00 E-value=0.00076 Score=46.87 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=47.4
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCccccc
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKF 277 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~ 277 (280)
+.+.+++||++|++. ...++..+|+++|+++.+.|...|..|.++|.|-++-. -+|..
T Consensus 8 m~~~~~~IL~~L~~~-----~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~-G~y~l 65 (67)
T 2heo_A 8 GDNLEQKILQVLSDD-----GGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSP-KYWSI 65 (67)
T ss_dssp -CHHHHHHHHHHHHH-----CSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEET-TEEEE
T ss_pred ccHHHHHHHHHHHHc-----CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCC-ceEee
Confidence 556788999999853 24699999999999999999999999999999987533 35544
No 19
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=96.99 E-value=0.00053 Score=48.73 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=46.7
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.+.++.++||++|++. ..-+.-.+|++.++++..+|.++|..|-.||.|+++
T Consensus 16 ~~~d~eekVLe~Lkea-----G~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SP 67 (80)
T 2lnb_A 16 REGHLEQRILQVLTEA-----GSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLT 67 (80)
T ss_dssp HHHHHHHHHHHHHHHH-----TSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccchHHHHHHHHHHHc-----CCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCC
Confidence 3466899999999985 347889999999999999999999999999999987
No 20
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=96.74 E-value=0.0054 Score=63.50 Aligned_cols=79 Identities=20% Similarity=0.398 Sum_probs=62.2
Q ss_pred EeeEEEEEEEEEeeec-----CCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEEEEe--eeCCeeEEEEE
Q 023576 70 ITNVTLVGLVYNKEER-----ASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLK--SFQGKKQIVAF 142 (280)
Q Consensus 70 i~~V~iVG~V~~~~~~-----~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~--~f~~~~~i~~~ 142 (280)
...|.|-|.|-.++.+ ..-++|.|.|.|++|.|+.|.+...+.+....+++|++|+|.|.+. .|.....+.+.
T Consensus 17 ~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~~~~k~f~~~~~~~~~~~~~~~g~~~~~~g~~~~d~~~~~~~~~~~ 96 (1041)
T 3f2b_A 17 ERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRDKEDAELMSGVKKGMWVKVRGSVQNDTFVRDLVIIAN 96 (1041)
T ss_dssp EEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSSHHHHHHHHTCCTTCEEEEEEEEEEETTTTEEEEEEE
T ss_pred cceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCCEEEEEeecccchHHHHhcCCCCCEEEEEEEEEeccCCcceEEEee
Confidence 4678999999876542 3567899999999999999977654334456799999999999987 46677788887
Q ss_pred EEeeCC
Q 023576 143 SVRPVT 148 (280)
Q Consensus 143 ~ir~v~ 148 (280)
.|.++.
T Consensus 97 ~~~~~~ 102 (1041)
T 3f2b_A 97 DLNEIA 102 (1041)
T ss_dssp EEEEEC
T ss_pred eeEEec
Confidence 776655
No 21
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=96.68 E-value=0.0023 Score=46.41 Aligned_cols=48 Identities=15% Similarity=0.351 Sum_probs=43.4
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.....+||++|+.. |++..+|+++|+++...|+..|..|..+|.|...
T Consensus 16 ~~~~~~IL~lL~~~-------g~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 16 AEIVCEAIKTIGIE-------GATAAQLTRQLNMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp HHHHHHHHHHHSSS-------TEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEC
T ss_pred HHHHHHHHHHHHHc-------CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 46888999999852 4999999999999999999999999999999875
No 22
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.49 E-value=0.0022 Score=46.18 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=44.0
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHH-HHHHHHHHHHhCCeeeec
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQK-KIMDSIASLENEGLIYST 269 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~-~v~~al~~L~~eG~IYsT 269 (280)
.+.+++||.+|+.. .+.+..+|++.|+++.. .|+..|..|..+|.|...
T Consensus 10 ~~~~~~IL~~Lk~~------g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~ 59 (79)
T 1xmk_A 10 AEIKEKICDYLFNV------SDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQ 59 (79)
T ss_dssp HHHHHHHHHHHHHT------CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred hhHHHHHHHHHHHc------CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEec
Confidence 46889999999975 27899999999999999 999999999999999843
No 23
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=96.47 E-value=0.023 Score=53.55 Aligned_cols=74 Identities=14% Similarity=0.022 Sum_probs=56.7
Q ss_pred eEEEEEEEEEeeecCCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEEEEeeeCC---eeEEEEEEEee
Q 023576 72 NVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQG---KKQIVAFSVRP 146 (280)
Q Consensus 72 ~V~iVG~V~~~~~~~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f~~---~~~i~~~~ir~ 146 (280)
.|+|.|+|.+++....-+-+.|.|+||.|.|.+-.+. ..-.....+..|+.|.|.|.+..-.. ...|.+..+..
T Consensus 18 ~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~-~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~~~~~~v 94 (429)
T 1wyd_A 18 EVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVDKNS-SAFGISQELTQESVIQVRGIVKADKRAPRGIELHAEEITL 94 (429)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECTTS-TTHHHHTTCCTTCEEEEEEEEEECSSSGGGEEEEEEEEEE
T ss_pred EEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCh-HHHHHHHhCCCCCEEEEEEEEEecCCCCccEEEEEeEEEE
Confidence 5999999999988777677799999999999975432 11123467999999999999987653 46676666543
No 24
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=96.37 E-value=0.0046 Score=44.36 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=40.4
Q ss_pred HHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 219 QMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 219 ~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.+|+++|++. .-+++++|++.|+.++..||.-|+.|.+.|.|-.+
T Consensus 5 ~~Il~~L~~~------g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLALR------GRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHS------CSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc------CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4689999874 36899999999999999999999999999999775
No 25
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=96.35 E-value=0.028 Score=53.35 Aligned_cols=77 Identities=16% Similarity=0.314 Sum_probs=55.6
Q ss_pred eeEEEEEEEEEeeecCC-eeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEEEEeeeC-----------CeeE
Q 023576 71 TNVTLVGLVYNKEERAS-DVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQ-----------GKKQ 138 (280)
Q Consensus 71 ~~V~iVG~V~~~~~~~t-~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f~-----------~~~~ 138 (280)
..|+|.|+|.+++.... -+-+.|.|+||.|.|.+-.+...+......+..|+.|.|.|.|..-. +...
T Consensus 31 ~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~~~~~~~~~t~g~~E 110 (456)
T 3m4p_A 31 KLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRLNAYAGKNHPPEIADILNLE 110 (456)
T ss_dssp SEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEEECCCSSSCCCSCTTBCSSE
T ss_pred CEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEecccchhhHHhhcCCCccEEEEEeEEEecCCcccCcccCCCCcEE
Confidence 46899999999988754 55568999999999987542211112234689999999999997432 4567
Q ss_pred EEEEEEeeC
Q 023576 139 IVAFSVRPV 147 (280)
Q Consensus 139 i~~~~ir~v 147 (280)
|.+..+..+
T Consensus 111 l~~~~i~vl 119 (456)
T 3m4p_A 111 MQVTEWKVI 119 (456)
T ss_dssp EEEEEEEEE
T ss_pred EEEeEEEEE
Confidence 777776654
No 26
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=96.28 E-value=0.028 Score=54.89 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=57.3
Q ss_pred eEEEEEEEEEeeecCCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEEEEeee--------CCeeEEEEEE
Q 023576 72 NVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSF--------QGKKQIVAFS 143 (280)
Q Consensus 72 ~V~iVG~V~~~~~~~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f--------~~~~~i~~~~ 143 (280)
.|+|.|+|.+++.....+-+.|-|+||.|.|.+-.+.. .-.....+..|+.|.|.|.|..- .+...|.+..
T Consensus 18 ~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~~~-~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ge~Ei~~~~ 96 (580)
T 1l0w_A 18 EVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPASP-AYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVELSA 96 (580)
T ss_dssp EEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECTTST-THHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTEEEEEEE
T ss_pred EEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCChh-HHHHHhcCCCCcEEEEEEEEEcCCCcCccCCCccEEEEEeE
Confidence 69999999999887777777999999999998754321 11234679999999999999874 3556777776
Q ss_pred EeeC
Q 023576 144 VRPV 147 (280)
Q Consensus 144 ir~v 147 (280)
|..+
T Consensus 97 i~vl 100 (580)
T 1l0w_A 97 LEVL 100 (580)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6433
No 27
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=96.25 E-value=0.041 Score=52.82 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=67.7
Q ss_pred eeeeHHHHhhcccCCCCCCCeEECCEEEeeEEEEEEEEEeeecCCeeEEEEEcCCceEEEEEeccccc-Ch-h-hhccCC
Q 023576 43 VPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVF-DT-R-EMEAIQ 119 (280)
Q Consensus 43 ~PvtIkqi~~a~~~~~~~~~~~i~g~~i~~V~iVG~V~~~~~~~t~~~~~LdDgTG~I~~~~w~~~~~-~~-~-~~~~~~ 119 (280)
+-.++++|......-+ ...+.-.| ..|+|.|+|.+++......-+.|.|+||.|.|.+-.+... +. . ....+.
T Consensus 41 ~~~~~~~~~~~~~~~~-~~~~~~~~---~~V~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~ 116 (504)
T 1e1o_A 41 RDHTSDQLHEEFDAKD-NQELESLN---IEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWD 116 (504)
T ss_dssp CSCCHHHHHHHHTTCC-HHHHHHHC---CEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCC
T ss_pred CceEHHHHHHHhhccC-ccccccCC---CEEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEECCcCCHHHHHHHHhcCC
Confidence 4456888876543210 00000001 3699999999998877777779999999999997644211 11 1 345799
Q ss_pred CCCEEEEEEEEeee-CCeeEEEEEEEeeC
Q 023576 120 DGMYVRLIGNLKSF-QGKKQIVAFSVRPV 147 (280)
Q Consensus 120 ~G~yVrV~G~l~~f-~~~~~i~~~~ir~v 147 (280)
.|+.|.|.|.|..- .+...|.+..+..+
T Consensus 117 ~g~~V~V~G~v~~~~~ge~ei~~~~i~vl 145 (504)
T 1e1o_A 117 LGDIIGARGTLFKTQTGELSIHCTELRLL 145 (504)
T ss_dssp TTCEEEEEEEEEECTTCCEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEecCCceEEEEEEEEEEe
Confidence 99999999999864 46677777776544
No 28
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.23 E-value=0.0047 Score=44.17 Aligned_cols=54 Identities=9% Similarity=0.185 Sum_probs=42.8
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
..+++||++|++.-......-+++.||++.|++++..|+.-|..|...|.|-.+
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 367889999987400000135799999999999999999999999999999765
No 29
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=96.22 E-value=0.029 Score=52.95 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=57.2
Q ss_pred eeEEEEEEEEEeeecCCeeEEEEEcCCceEEEEEecccccC--hhhhccCCCCCEEEEEEEEeeeC---CeeEEEEEEEe
Q 023576 71 TNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFD--TREMEAIQDGMYVRLIGNLKSFQ---GKKQIVAFSVR 145 (280)
Q Consensus 71 ~~V~iVG~V~~~~~~~t~~~~~LdDgTG~I~~~~w~~~~~~--~~~~~~~~~G~yVrV~G~l~~f~---~~~~i~~~~ir 145 (280)
..|+|.|+|.+++....-+-+.|.|+||.|.|.+-.+.... -.....+..|+.|.|.|.+..-. +...|.+..+.
T Consensus 17 ~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~~~~~~~el~~~~i~ 96 (438)
T 3nem_A 17 QKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIV 96 (438)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECTTSTTSEEEEEEEEE
T ss_pred CEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCCCCCcEEEEEEEEE
Confidence 46899999999988776555699999999998875432110 12245799999999999998754 46677777665
Q ss_pred eC
Q 023576 146 PV 147 (280)
Q Consensus 146 ~v 147 (280)
.+
T Consensus 97 vl 98 (438)
T 3nem_A 97 VL 98 (438)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 30
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=96.20 E-value=0.023 Score=55.57 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=57.6
Q ss_pred eEEEEEEEEEeeecCCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEEEEeee----------CCeeEEEE
Q 023576 72 NVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSF----------QGKKQIVA 141 (280)
Q Consensus 72 ~V~iVG~V~~~~~~~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f----------~~~~~i~~ 141 (280)
.|+|.|+|.+++....-+-+.|-|+||.|.|.+-.+....-.....+..|+.|.|.|.|..- .+...|.+
T Consensus 17 ~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~~geiEl~~ 96 (585)
T 1c0a_A 17 QVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLA 96 (585)
T ss_dssp EEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTTTTEEEEE
T ss_pred EEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccccccCCCccEEEEE
Confidence 59999999999887777777999999999998743221101123578999999999999864 35577777
Q ss_pred EEEeeCC
Q 023576 142 FSVRPVT 148 (280)
Q Consensus 142 ~~ir~v~ 148 (280)
..+..+.
T Consensus 97 ~~i~vl~ 103 (585)
T 1c0a_A 97 SSLTIIN 103 (585)
T ss_dssp EEEEEEE
T ss_pred eEEEEEe
Confidence 7765543
No 31
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.17 E-value=0.0055 Score=43.69 Aligned_cols=45 Identities=22% Similarity=0.396 Sum_probs=40.0
Q ss_pred hHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 218 DQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 218 ~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
+++||++|.+. ..+++.+|++.++++...|+..|..|.++|.|..
T Consensus 2 r~~Il~~L~~~------~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 2 KNEILEFLNRH------NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHHS------CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 56899999763 2589999999999999999999999999999974
No 32
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=96.17 E-value=0.0083 Score=44.26 Aligned_cols=54 Identities=15% Similarity=0.393 Sum_probs=48.6
Q ss_pred CCCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 212 DGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 212 ~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.+|+.-|..||.+|.+. .+.|+...+|+++++++...|..+|+.|...|+|...
T Consensus 16 ~~Lt~~q~~Vl~~I~~~----g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDA----GNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp CCSCSSHHHHHHHHHHH----CTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHHHHHc----CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 47888999999999974 2469999999999999999999999999999999943
No 33
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=96.16 E-value=0.0059 Score=44.71 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecC
Q 023576 219 QMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTI 270 (280)
Q Consensus 219 ~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTi 270 (280)
.+|+++|++. .-+++++|++.|++++..||.-|+.|...|.|.-+-
T Consensus 5 ~~Il~~L~~~------g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQ------GRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHS------CSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHc------CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4689999864 368999999999999999999999999999998874
No 34
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=96.12 E-value=0.029 Score=53.71 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=57.7
Q ss_pred eeEEEEEEEEEeeecCCe-eEEEEEcCCceEEEEEecccc--cC---hhhhccCCCCCEEEEEEEEeeeC--------Ce
Q 023576 71 TNVTLVGLVYNKEERASD-VNFTLDDGTGRVVCKRWASEV--FD---TREMEAIQDGMYVRLIGNLKSFQ--------GK 136 (280)
Q Consensus 71 ~~V~iVG~V~~~~~~~t~-~~~~LdDgTG~I~~~~w~~~~--~~---~~~~~~~~~G~yVrV~G~l~~f~--------~~ 136 (280)
..|+|.|+|.+++..... +-+.|.|++|.|.|.+-.+.+ .. ......+..|+.|.|.|.+..-. +.
T Consensus 37 ~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g~ 116 (487)
T 1eov_A 37 KEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQN 116 (487)
T ss_dssp CEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEE
T ss_pred CEEEEEEEEEEeeccCCccEEEEEEECCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCCCCc
Confidence 369999999999887766 677999999999998754311 11 11235789999999999998765 35
Q ss_pred eEEEEEEEeeCC
Q 023576 137 KQIVAFSVRPVT 148 (280)
Q Consensus 137 ~~i~~~~ir~v~ 148 (280)
..|.+..+..+.
T Consensus 117 ~El~~~~i~vl~ 128 (487)
T 1eov_A 117 LEIHITKIYTIS 128 (487)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEEEEEEEee
Confidence 667777665543
No 35
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=96.09 E-value=0.015 Score=41.24 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=45.3
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
+++..|+++|...+ .++..+..+||++|+++-.+|+.+|-.|...|.|+..
T Consensus 12 ~~~~~v~~~i~~L~---~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 12 EIFSLVKKEVLSLN---TNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp HHHHHHHHHHHTSC---TTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCC---CCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 58889999998874 3445999999999999999999999999999999875
No 36
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=96.04 E-value=0.0096 Score=39.68 Aligned_cols=45 Identities=22% Similarity=0.543 Sum_probs=39.7
Q ss_pred hhHHHHHHhcCCCCCCCCCcc-CHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 217 CDQMILDYLQQPSSSERERGV-HVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv-~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
..++||++|++.+ |+ .++.+++.++.+.++|..+|..|.+.|+|=
T Consensus 11 ~e~~lL~yIr~sG------GildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 11 TERELLDYIVNNG------GFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp CHHHHHHHHHHTT------SEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred cHHHHHHHHHHcC------CEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 3568999999842 54 999999999999999999999999999984
No 37
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=95.99 E-value=0.027 Score=54.39 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=57.2
Q ss_pred eeEEEEEEEEEeeecCCeeEEEEEcCCceEEEEEecccccC--hhhhccCCCCCEEEEEEEEeeeC-CeeEEEEEEEeeC
Q 023576 71 TNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFD--TREMEAIQDGMYVRLIGNLKSFQ-GKKQIVAFSVRPV 147 (280)
Q Consensus 71 ~~V~iVG~V~~~~~~~t~~~~~LdDgTG~I~~~~w~~~~~~--~~~~~~~~~G~yVrV~G~l~~f~-~~~~i~~~~ir~v 147 (280)
..|+|.|+|.+++....-+-+.|.|+||.|.|.+-.+...+ -.....+..|+.|.|.|.+..-. +...|.+..|+.+
T Consensus 87 ~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~gelel~~~~i~vL 166 (529)
T 4ex5_A 87 LEVAIAGRMMLKRVMGKASFATVQDGSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRLL 166 (529)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEECSSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred cEEEEEEEEEeeecCCCeEEEEEEeCCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcCCCcEEEEEEEEEEE
Confidence 46999999999987776666799999999998865432110 12235699999999999998643 6777877776543
No 38
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=95.91 E-value=0.06 Score=50.53 Aligned_cols=68 Identities=16% Similarity=0.126 Sum_probs=54.9
Q ss_pred eEEEEEEEEEeeecCCeeEEEEEcCCceEEEEEecccccChhhhccCC-CCCEEEEEEEEeeeCC---eeEEEEEEEeeC
Q 023576 72 NVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQ-DGMYVRLIGNLKSFQG---KKQIVAFSVRPV 147 (280)
Q Consensus 72 ~V~iVG~V~~~~~~~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~-~G~yVrV~G~l~~f~~---~~~i~~~~ir~v 147 (280)
.|+|.|+|.+++.....+-+.|.|+||.|.|..-. ..+. .|+.|.|.|.+..-.. ...|.+..+..+
T Consensus 15 ~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~---------~~l~~~~~~v~v~G~v~~~~~~~~~~el~~~~~~vl 85 (422)
T 1n9w_A 15 EVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGG---------LKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVL 85 (422)
T ss_dssp EEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEES---------CCCCCTTCEEEEEEEEEECTTSTTSEEEEEEEEEEE
T ss_pred EEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEEc---------cccCCCCCEEEEEEEEEecCCCCccEEEEEeEEEEe
Confidence 69999999999988776677999999999988642 4588 9999999999987653 577777776554
Q ss_pred C
Q 023576 148 T 148 (280)
Q Consensus 148 ~ 148 (280)
.
T Consensus 86 ~ 86 (422)
T 1n9w_A 86 S 86 (422)
T ss_dssp E
T ss_pred c
Confidence 3
No 39
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=95.90 E-value=0.032 Score=52.62 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=57.7
Q ss_pred eEEEEEEEEEeeecCCeeEEEEEcCCceEEEEEeccccc-C-hhhhccCCCCCEEEEEEEEeeeCC---eeEEEEEEEee
Q 023576 72 NVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVF-D-TREMEAIQDGMYVRLIGNLKSFQG---KKQIVAFSVRP 146 (280)
Q Consensus 72 ~V~iVG~V~~~~~~~t~~~~~LdDgTG~I~~~~w~~~~~-~-~~~~~~~~~G~yVrV~G~l~~f~~---~~~i~~~~ir~ 146 (280)
.|+|.|+|.+++....-+-+.|.|+||.|.|.+-.+... + -.....+..|+.|.|.|.+..-.. ...|.+..+..
T Consensus 18 ~V~v~G~v~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~~~~~~v 97 (434)
T 1x54_A 18 KVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADERAPGGAEVHVEKLEV 97 (434)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSGGGEEEEEEEEEE
T ss_pred EEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecCCCCccEEEEEeEEEE
Confidence 599999999998877766779999999999987532210 1 122357999999999999987653 57777777654
Q ss_pred CC
Q 023576 147 VT 148 (280)
Q Consensus 147 v~ 148 (280)
+.
T Consensus 98 l~ 99 (434)
T 1x54_A 98 IQ 99 (434)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 40
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=95.78 E-value=0.037 Score=53.03 Aligned_cols=102 Identities=16% Similarity=0.072 Sum_probs=67.3
Q ss_pred eeeeHHHHhhcccCCCCCCCeEECCEEEeeEEEEEEEEEeeecCCeeEEEEEcCCceEEEEEecccccC--hhhhccCCC
Q 023576 43 VPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFD--TREMEAIQD 120 (280)
Q Consensus 43 ~PvtIkqi~~a~~~~~~~~~~~i~g~~i~~V~iVG~V~~~~~~~t~~~~~LdDgTG~I~~~~w~~~~~~--~~~~~~~~~ 120 (280)
+-.++++|......-+ ...+.-.| ..|+|.|+|.+++.....+-+.|.|+||.|.|.+-.+...+ -.....+..
T Consensus 33 ~~~~~~~~~~~~~~~~-~~~~~~~~---~~V~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~ 108 (493)
T 3a74_A 33 RTHKAEELFELYGDLS-KEELEEQQ---IEVAVAGRIMTKRGMGKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKISDL 108 (493)
T ss_dssp CSCCHHHHHHHHTTSC-HHHHHHHC---CEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCCT
T ss_pred CceehHHHHHhhcccc-chhhccCC---CEEEEEEEEEEEecCCCcEEEEEEECCEeEEEEEECCcCCHHHHHHHhcCCC
Confidence 3456888877543210 00000001 36999999999988777777799999999999875432100 112356899
Q ss_pred CCEEEEEEEEeee-CCeeEEEEEEEeeCC
Q 023576 121 GMYVRLIGNLKSF-QGKKQIVAFSVRPVT 148 (280)
Q Consensus 121 G~yVrV~G~l~~f-~~~~~i~~~~ir~v~ 148 (280)
|+.|.|.|.+..- .+...|.+..+..+.
T Consensus 109 g~~v~V~G~v~~~~~ge~ei~~~~i~vl~ 137 (493)
T 3a74_A 109 GDIVGVRGTMFKTKVGELSIKVSSYEFLT 137 (493)
T ss_dssp TCEEEEEEEEEECTTCCEEEEEEEEEEEE
T ss_pred CCEEEEEEEEEeCCCCcEEEEEEEEEEcc
Confidence 9999999999864 466777777765443
No 41
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=95.77 E-value=0.074 Score=50.11 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=55.6
Q ss_pred eEEEEEEEEEeeecC-CeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEEEEeeeC------CeeEEEEEEE
Q 023576 72 NVTLVGLVYNKEERA-SDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQ------GKKQIVAFSV 144 (280)
Q Consensus 72 ~V~iVG~V~~~~~~~-t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f~------~~~~i~~~~i 144 (280)
.|+|.|+|.+++... .-+-+.|.|+||.|.|.+-.+.. +......+..|+.|.|.|.|+.-. +...|.+..+
T Consensus 13 ~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~~~-~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~g~~El~~~~~ 91 (435)
T 2xgt_A 13 RVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLC-QTYDALTVNTECTVEIYGAIKEVPEGKEAPNGHELIADFW 91 (435)
T ss_dssp EEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGGGG-SSHHHHHCCTTCEEEEEEEEEECC------TTEEEEEEEE
T ss_pred EEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCcch-hHHHHhcCCCCCEEEEEEEEEecCCCcCCCCcEEEEEEEE
Confidence 599999999998874 45667999999999998742211 111123689999999999998632 4467777777
Q ss_pred eeCC
Q 023576 145 RPVT 148 (280)
Q Consensus 145 r~v~ 148 (280)
..+.
T Consensus 92 ~vl~ 95 (435)
T 2xgt_A 92 KIIG 95 (435)
T ss_dssp EEEE
T ss_pred EEee
Confidence 6655
No 42
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=95.76 E-value=0.22 Score=41.43 Aligned_cols=88 Identities=19% Similarity=0.196 Sum_probs=62.1
Q ss_pred CceeeeeHHHHhhcccCCCCCCCeEECCEEEeeEEEEEEEEEee----e-cCC---eeEEEEEcCC----c-eEEEEEec
Q 023576 40 QGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKE----E-RAS---DVNFTLDDGT----G-RVVCKRWA 106 (280)
Q Consensus 40 ~~~~PvtIkqi~~a~~~~~~~~~~~i~g~~i~~V~iVG~V~~~~----~-~~t---~~~~~LdDgT----G-~I~~~~w~ 106 (280)
....-.+|++++...+.. ..|.++|+|+.+. . +.+ .++|+|-|.+ + .|.|++|.
T Consensus 25 ~~~~~~~~r~~l~~~~~g-------------~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~ 91 (187)
T 1qzg_A 25 GELTFQSIRSSQELQKKN-------------TIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFS 91 (187)
T ss_dssp TTEEEECHHHHTSCCSSC-------------EEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEE
T ss_pred cceeEEEHHHHHhhccCC-------------CEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEEC
Confidence 345556777777532221 4688999998863 1 223 6789999977 3 49999998
Q ss_pred ccccChhhhccC-CCCCEEEEEE-EEeeeCCeeEEEEEE
Q 023576 107 SEVFDTREMEAI-QDGMYVRLIG-NLKSFQGKKQIVAFS 143 (280)
Q Consensus 107 ~~~~~~~~~~~~-~~G~yVrV~G-~l~~f~~~~~i~~~~ 143 (280)
+..+ ..+.+ .+||.|++.. +++.|+++.++...+
T Consensus 92 ~~~e---~LP~V~~~GDIIlL~rvkiq~~~g~~~~v~~~ 127 (187)
T 1qzg_A 92 KQGN---DLPVIKQVGQPLLLHQITLRSYRDRTQGLSKD 127 (187)
T ss_dssp SSSS---CSCCCCSTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred CChh---hCCCCCCCCCEEEEEEEEEEEECCeEEEEEcC
Confidence 7542 35666 8999999975 677899998886544
No 43
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=95.61 E-value=0.097 Score=50.69 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=57.7
Q ss_pred eeEEEEEEEEEeeecCCeeEEEEEcCCceEEEEEecccccCh---hhhccCCCCCEEEEEEEEeeeC--------CeeEE
Q 023576 71 TNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFDT---REMEAIQDGMYVRLIGNLKSFQ--------GKKQI 139 (280)
Q Consensus 71 ~~V~iVG~V~~~~~~~t~~~~~LdDgTG~I~~~~w~~~~~~~---~~~~~~~~G~yVrV~G~l~~f~--------~~~~i 139 (280)
..|+|.|+|.+++....-+-+.|-|++|.|.|.+-.+...+. .....+..|+.|.|.|.|..-. +...|
T Consensus 63 ~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El 142 (548)
T 3i7f_A 63 KTVTIRARVQAVRGKGNMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEI 142 (548)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSSCSEEE
T ss_pred CEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEECCCccCHHHHHHHhCCCCCCEEEEEEEEEeCCcccccCCCCcEEE
Confidence 468999999999887765566899999999999865322111 1245799999999999999753 45677
Q ss_pred EEEEEeeC
Q 023576 140 VAFSVRPV 147 (280)
Q Consensus 140 ~~~~ir~v 147 (280)
.+..|..+
T Consensus 143 ~~~~i~vl 150 (548)
T 3i7f_A 143 HVTSIAVV 150 (548)
T ss_dssp EEEEEEEE
T ss_pred EEeEEEEE
Confidence 77776654
No 44
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=95.52 E-value=0.1 Score=50.35 Aligned_cols=101 Identities=9% Similarity=0.152 Sum_probs=67.7
Q ss_pred eeeeHHHHhhcccCCCCCCCeEECCEEEeeEEEEEEEEEeeecC-CeeEEEEEcCCceEEEEEecccc-c-Ch-h-hhcc
Q 023576 43 VPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERA-SDVNFTLDDGTGRVVCKRWASEV-F-DT-R-EMEA 117 (280)
Q Consensus 43 ~PvtIkqi~~a~~~~~~~~~~~i~g~~i~~V~iVG~V~~~~~~~-t~~~~~LdDgTG~I~~~~w~~~~-~-~~-~-~~~~ 117 (280)
+..++++|......-..+.. ..| ..|+|.|+|.+++... .-.-+.|.|+||.|.|.+-.+.. . +. . ....
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~--~~~---~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~ 107 (521)
T 3bju_A 33 VDISLTDFIQKYSHLQPGDH--LTD---ITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNK 107 (521)
T ss_dssp CCSCHHHHHHHHTTCCTTCB--CSS---CCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHH
T ss_pred CccchHHHHHHhhhhccccc--cCC---cEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhc
Confidence 44678898765432111001 112 4699999999998877 55667999999999999865432 1 11 1 1245
Q ss_pred CCCCCEEEEEEEEeee-CCeeEEEEEEEeeCC
Q 023576 118 IQDGMYVRLIGNLKSF-QGKKQIVAFSVRPVT 148 (280)
Q Consensus 118 ~~~G~yVrV~G~l~~f-~~~~~i~~~~ir~v~ 148 (280)
+..|+.|.|.|.+..- .+...|.+..+..+.
T Consensus 108 l~~gd~V~V~G~v~~t~~ge~ei~~~~i~~l~ 139 (521)
T 3bju_A 108 LRRGDIIGVQGNPGKTKKGELSIIPYEITLLS 139 (521)
T ss_dssp CCTTCEEEEEEEEEECTTCCEEEEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEecCCCCEEEEEeEEEEee
Confidence 8999999999999764 466777777765443
No 45
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.50 E-value=0.02 Score=42.59 Aligned_cols=57 Identities=14% Similarity=0.352 Sum_probs=51.4
Q ss_pred CCCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 212 DGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 212 ~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
.+|++.+..||.+|++. .+.||...+|..+++++...|..+|..|++.|+|.+--+.
T Consensus 33 ~~Lt~~E~lVy~~I~~a----Gn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~Vksv 89 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIEDA----GNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSV 89 (95)
T ss_dssp CSCSHHHHHHHHHHHHH----TTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEECCS
T ss_pred cCCCHHHHHHHHHHHHh----CCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEecCc
Confidence 57889999999999985 3679999999999999999999999999999999886554
No 46
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=95.48 E-value=0.022 Score=46.02 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=42.7
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
|.++.++||+.|++. .-++..+|++++++++..|+..|..|.++|.|-
T Consensus 1 lD~~d~~il~~L~~~------~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 1 MDRLDRKILRILQED------STLAVADLAKKVGLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp CCHHHHHHHHHHTTC------SCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSC
T ss_pred CCHHHHHHHHHHHHC------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 356889999999874 257999999999999999999999999999984
No 47
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=95.26 E-value=0.025 Score=44.71 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=43.4
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
+.+++.+||++|++. ..++..+|+++++++...|...|..|.+.|.|-
T Consensus 3 ld~~d~~il~~L~~~------~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 50 (144)
T 2cfx_A 3 LDQIDLNIIEELKKD------SRLSMRELGRKIKLSPPSVTERVRQLESFGIIK 50 (144)
T ss_dssp CCHHHHHHHHHHHHC------SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 567899999999863 358999999999999999999999999999995
No 48
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=95.21 E-value=0.018 Score=43.98 Aligned_cols=59 Identities=15% Similarity=0.285 Sum_probs=49.8
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHh--CCCHHHHHHHHHHHHhCCeeeecCCCccccccC
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQL--KIPQKKIMDSIASLENEGLIYSTIDEFHYKFAR 279 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l--~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t~ 279 (280)
+...+++||++|+.. .-+++.+|++.+ +++...|++.|..|.+.|.|-..-.- .|..|+
T Consensus 11 md~~d~~IL~~L~~~------g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg-~Y~LT~ 71 (111)
T 3b73_A 11 MTIWDDRILEIIHEE------GNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANG-VYVITE 71 (111)
T ss_dssp CCHHHHHHHHHHHHH------SCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTT-CEEECH
T ss_pred cCHHHHHHHHHHHHc------CCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCc-eEEECc
Confidence 577899999999864 257999999999 99999999999999999999875333 677663
No 49
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.04 E-value=0.039 Score=39.16 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=45.6
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHh-----CCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQL-----KIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-----~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
+++-+..||++|.+. ....+++++|++.+ +++...|...|+.|.+.|.|-..-.
T Consensus 15 ~t~~r~~IL~~l~~~----~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~ 73 (83)
T 2fu4_A 15 VTLPRLKILEVLQEP----DNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNF 73 (83)
T ss_dssp CCHHHHHHHHHHTSG----GGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred cCHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEee
Confidence 466788899999863 11478999999999 7999999999999999999987644
No 50
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=95.03 E-value=0.039 Score=43.67 Aligned_cols=48 Identities=27% Similarity=0.475 Sum_probs=42.8
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
.+.+.+||.+|+.. ..++..+|++.++++...|...|..|.+.|.|-.
T Consensus 2 d~~~~~il~~L~~~------~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 2 DEIDLRILKILQYN------AKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp CHHHHHHHHHHTTC------TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred ChHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 56788999999863 2689999999999999999999999999999954
No 51
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=94.93 E-value=0.029 Score=44.56 Aligned_cols=48 Identities=23% Similarity=0.395 Sum_probs=43.6
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
+.+++.+||++|+.. ..++..+|++.++++...|+..|..|.++|.|-
T Consensus 7 ld~~d~~il~~L~~~------~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 7 LDRVDMQLVKILSEN------SRLTYRELADILNTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp CCHHHHHHHHHHHHC------TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred CCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 678899999999863 368999999999999999999999999999994
No 52
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=94.93 E-value=0.027 Score=44.04 Aligned_cols=48 Identities=23% Similarity=0.499 Sum_probs=42.5
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
+++++..||..|+.. ..++..+|+++++++...|+..|..|.++|.|-
T Consensus 2 ld~~~~~il~~L~~~------~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 2 IDERDKIILEILEKD------ARTPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp CCSHHHHHHHHHHHC------TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 456888999999753 257999999999999999999999999999994
No 53
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.91 E-value=0.033 Score=43.00 Aligned_cols=53 Identities=17% Similarity=0.343 Sum_probs=45.6
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
+++..+..||.+|.+.+ +..+++.+|++.++++...|..+|+.|.+.|.|...
T Consensus 23 gLt~~e~~il~~L~~~~----~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 23 NLTKADLNVMKSFLNEP----DRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp TCCHHHHHHHHHHHHST----TCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCC----CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 67889999999998631 112999999999999999999999999999999764
No 54
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=94.87 E-value=0.07 Score=38.64 Aligned_cols=52 Identities=25% Similarity=0.315 Sum_probs=44.5
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
.+.+..||.+|.. ..++++.+|++.++++...|...|..|.+.|.|-..-|.
T Consensus 23 ~~~~~~il~~l~~------~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~ 74 (99)
T 3cuo_A 23 HPKRLLILCMLSG------SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDA 74 (99)
T ss_dssp SHHHHHHHHHHTT------CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred ChHHHHHHHHHHh------CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 3577889999865 237899999999999999999999999999999876554
No 55
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=94.86 E-value=0.33 Score=36.68 Aligned_cols=60 Identities=25% Similarity=0.283 Sum_probs=42.4
Q ss_pred EeeEEEEEEEEEe-----e-ecCCeeEEEEE-----cCCceEEEEEecccccChhhhccCCCCCEEEEEEEEeee
Q 023576 70 ITNVTLVGLVYNK-----E-ERASDVNFTLD-----DGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSF 133 (280)
Q Consensus 70 i~~V~iVG~V~~~-----~-~~~t~~~~~Ld-----DgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f 133 (280)
.++|.|+|.+..= + ....+.+|+|. |.+--|.|..|...++ ...+..|+.|.|.|++++|
T Consensus 11 ~N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe----~~~~~kG~~v~v~G~lrsy 81 (107)
T 4gs3_A 11 NNTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFE----GMNLEVGTRVKIEGQLRSY 81 (107)
T ss_dssp CSCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGST----TCCCCTTCEEEEEEEEEEE
T ss_pred CCEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhh----HHhhcCCCEEEEEEEEEec
Confidence 3778888888541 1 23346666664 5566799999987653 2335689999999999986
No 56
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=94.80 E-value=0.034 Score=44.19 Aligned_cols=49 Identities=20% Similarity=0.342 Sum_probs=44.0
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
+.+++.+||++|+.. ..++..+|++++++++..|+..|..|.++|.|-.
T Consensus 6 ld~~d~~il~~L~~~------~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 6 IDNLDRGILEALMGN------ARTAYAELAKQFGVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp CCHHHHHHHHHHHHC------TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred cCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcce
Confidence 677899999999864 3689999999999999999999999999999953
No 57
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=94.79 E-value=0.1 Score=43.18 Aligned_cols=76 Identities=11% Similarity=0.141 Sum_probs=50.0
Q ss_pred eeEEEEEcCCceEEEEEecccccC-----hhhh------------ccC--CCCC--EEEEEEEEeeeCCe--eEEEEEEE
Q 023576 88 DVNFTLDDGTGRVVCKRWASEVFD-----TREM------------EAI--QDGM--YVRLIGNLKSFQGK--KQIVAFSV 144 (280)
Q Consensus 88 ~~~~~LdDgTG~I~~~~w~~~~~~-----~~~~------------~~~--~~G~--yVrV~G~l~~f~~~--~~i~~~~i 144 (280)
.+.+.|.|.||.+.|..|.+.... .... ..+ ..+. .++|..+...|+++ ...++.++
T Consensus 80 ~l~~~i~D~Tg~~~~t~F~~~ae~ilG~sA~el~~l~e~~~~~~~~~~~~~~~~~~~f~l~vk~e~yn~e~r~~~~v~~~ 159 (181)
T 1l1o_C 80 ILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDKNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDV 159 (181)
T ss_dssp EEEEEEECSSCEEEEEEEHHHHHHHHSSCHHHHHHHTTSCHHHHHHHHHHTTTCEEEEEEEEECCCC-----CEEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEEhHHHHHHhCCCHHHHHHHHhhChHHHHHHHHHhcCceEEEEEEEEEeecCCEEEEEEEEEEe
Confidence 567889999999999999864320 0000 000 1122 45666667778766 56888999
Q ss_pred eeCCCchHHHHHHHHHHHHH
Q 023576 145 RPVTNFDEVTCHYIECIYFH 164 (280)
Q Consensus 145 r~v~d~Nei~~H~Le~i~~~ 164 (280)
.|| |+.+...|+|+.|...
T Consensus 160 ~~v-d~~~e~~~L~~~i~~~ 178 (181)
T 1l1o_C 160 KPV-DYREYGRRLVMSIRRS 178 (181)
T ss_dssp EEC-CHHHHHHHHHHHHHHH
T ss_pred eeC-CHHHHHHHHHHHHHHh
Confidence 999 6788889999998654
No 58
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=94.78 E-value=0.038 Score=40.43 Aligned_cols=53 Identities=23% Similarity=0.399 Sum_probs=46.5
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
+++..+..||.+|... .++++.+|++.++++...|...|..|.+.|.|...-+
T Consensus 17 ~l~~~~~~il~~l~~~------~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLER------GGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp CCCHHHHHHHHHHHHH------CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEee
Confidence 4677888999999753 3689999999999999999999999999999987654
No 59
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=94.77 E-value=0.06 Score=39.30 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=45.8
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCccccccC
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFAR 279 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t~ 279 (280)
.+.+..||.+| . ..+++.+|++.++++...|...|..|.+.|.|...- . +|..+.
T Consensus 30 ~~~r~~Il~~L-~-------~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~-g-~y~l~~ 84 (96)
T 1y0u_A 30 NPVRRKILRML-D-------KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-E-RWVVTD 84 (96)
T ss_dssp CHHHHHHHHHH-H-------TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-T-EEEECT
T ss_pred CHHHHHHHHHH-c-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC-C-EEEECC
Confidence 34677899998 3 148999999999999999999999999999998765 3 776553
No 60
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=94.71 E-value=0.042 Score=43.56 Aligned_cols=48 Identities=19% Similarity=0.379 Sum_probs=43.4
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
+++.+.+||.+|+.. ..++..+|+++++++...|...|..|.+.|.|-
T Consensus 5 ld~~~~~iL~~L~~~------~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 52 (150)
T 2w25_A 5 LDDIDRILVRELAAD------GRATLSELATRAGLSVSAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp CCHHHHHHHHHHHHC------TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred cCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 678899999999863 368999999999999999999999999999994
No 61
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=94.69 E-value=0.041 Score=45.00 Aligned_cols=49 Identities=39% Similarity=0.527 Sum_probs=44.1
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
.+.+++.+||.+|+.. ..++..+|+++++++...|+..|..|.++|.|-
T Consensus 14 ~ld~~d~~IL~~L~~~------~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~ 62 (171)
T 2ia0_A 14 HLDDLDRNILRLLKKD------ARLTISELSEQLKKPESTIHFRIKKLQERGVIE 62 (171)
T ss_dssp CCCHHHHHHHHHHHHC------TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4678999999999864 258999999999999999999999999999993
No 62
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=94.53 E-value=0.068 Score=41.06 Aligned_cols=56 Identities=20% Similarity=0.386 Sum_probs=47.9
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+.+++..+|++.++++...|..+|+.|.+.|.|...-|.
T Consensus 31 ~lt~~~~~iL~~l~~~----~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~ 86 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRN----KNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSG 86 (141)
T ss_dssp TCCHHHHHHHHHHHHT----TTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHC----CCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCC
Confidence 4667788899999864 2348999999999999999999999999999999987653
No 63
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=94.50 E-value=0.039 Score=43.83 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=43.9
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
.+++.+.+||++|+.. ..++..+|++.++++...|...|..|.+.|.|-
T Consensus 4 ~ld~~~~~il~~L~~~------~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 4 PLDEIDKKIIKILQND------GKAPLREISKITGLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp CCCHHHHHHHHHHHHC------TTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSC
T ss_pred CcCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 3678899999999864 268999999999999999999999999999994
No 64
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=94.47 E-value=0.05 Score=43.73 Aligned_cols=49 Identities=27% Similarity=0.398 Sum_probs=43.9
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
.+++.+.+||++|+.. ..++..+|++.++++...|...|..|.+.|.|-
T Consensus 7 ~ld~~~~~il~~L~~~------~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 55 (162)
T 2p5v_A 7 TLDKTDIKILQVLQEN------GRLTNVELSERVALSPSPCLRRLKQLEDAGIVR 55 (162)
T ss_dssp CCCHHHHHHHHHHHHC------TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 3678899999999864 247999999999999999999999999999994
No 65
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=94.44 E-value=0.046 Score=57.56 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=43.9
Q ss_pred eeEEEEEEEEEeeec-----CCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEEEEeeeCCeeEEEEEEEe
Q 023576 71 TNVTLVGLVYNKEER-----ASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVR 145 (280)
Q Consensus 71 ~~V~iVG~V~~~~~~-----~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f~~~~~i~~~~ir 145 (280)
..|.+.|.|.+++.. .....++|+|.||.+++++|.+.-. .....+..+..|.|.|+++.-. ..+|.+..|.
T Consensus 1043 ~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~~~--~~~~~l~~~~~~~v~G~v~~~~-~~~l~~~~i~ 1119 (1220)
T 2hpi_A 1043 PKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAYE--GVSPKLKEDIPLLVLAEVEKGE-ELRVLAQAVW 1119 (1220)
T ss_dssp CEEEEEEEECCC------------CEEEEETTEEEEEC---------------CTTCEEEEEEEEC------CEEEEEEE
T ss_pred CeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHHHH--HHHHHhccCCEEEEEEEEEECC-CcEEEEeeee
Confidence 357799999887532 2356789999999999999987532 2245689999999999997544 5788888887
Q ss_pred eCC
Q 023576 146 PVT 148 (280)
Q Consensus 146 ~v~ 148 (280)
+++
T Consensus 1120 ~l~ 1122 (1220)
T 2hpi_A 1120 TLE 1122 (1220)
T ss_dssp EHH
T ss_pred cHH
Confidence 653
No 66
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=94.33 E-value=0.072 Score=40.96 Aligned_cols=56 Identities=21% Similarity=0.418 Sum_probs=48.7
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+.+++..+|++.++++...|...|+.|...|.|...-|.
T Consensus 28 ~lt~~~~~vL~~l~~~----~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~ 83 (139)
T 3eco_A 28 DITNEQGHTLGYLYAH----QQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDA 83 (139)
T ss_dssp TCCHHHHHHHHHHHHS----TTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCCHHHHHHHHHHHhc----CCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCC
Confidence 4677888999999764 2459999999999999999999999999999999987654
No 67
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=94.32 E-value=0.019 Score=47.89 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=45.5
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.|+.-|++||++|.+.-. ......++.||++.|+++...|...|..|...|+|...
T Consensus 2 ~lt~~q~~il~~I~~~~~-~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIE-KNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp CCCHHHHHHHHHHHHHHH-HHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred CcCHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 367899999999876310 11235799999999999999999999999999999764
No 68
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=94.31 E-value=0.053 Score=44.35 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=44.2
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
.+.+++.+||++|+.. ..+++.+|++++++++..|+..|..|.++|.|-
T Consensus 24 ~ld~~d~~IL~~L~~~------~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~ 72 (171)
T 2e1c_A 24 PLDEIDKKIIKILQND------GKAPLREISKITGLAESTIHERIRKLRESGVIK 72 (171)
T ss_dssp CCCHHHHHHHHHHHHC------TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSC
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 4788999999999864 258999999999999999999999999999994
No 69
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=94.25 E-value=0.046 Score=40.96 Aligned_cols=34 Identities=24% Similarity=0.518 Sum_probs=31.5
Q ss_pred cc-CHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 236 GV-HVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 236 Gv-~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
-+ +..+|+++|+++...|++||..|.++|.|+..
T Consensus 42 ~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 42 GLLVASKIADRVGITRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp EEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45 99999999999999999999999999999864
No 70
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=94.17 E-value=0.65 Score=34.58 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=48.7
Q ss_pred EeeEEEEEEEEEee---e---cCCeeEEEE-----EcCCce-------EEEEEecccccChhhhccCCCCCEEEEEEEEe
Q 023576 70 ITNVTLVGLVYNKE---E---RASDVNFTL-----DDGTGR-------VVCKRWASEVFDTREMEAIQDGMYVRLIGNLK 131 (280)
Q Consensus 70 i~~V~iVG~V~~~~---~---~~t~~~~~L-----dDgTG~-------I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~ 131 (280)
++.|.|+|.+..-- . ......|+| .+.|+- |.|..|...++ .....+..|+.|.|.|+|+
T Consensus 2 ~N~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae--~~~~~l~KG~~V~V~G~L~ 79 (104)
T 1txy_A 2 TNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQ--AITHSITVGSRITVQGFIS 79 (104)
T ss_dssp CEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTH--HHHTTCCTTCEEEEEEEEE
T ss_pred cEEEEEEEEECCCceEEECCCCCEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHH--HHHhhCCCCCEEEEEEEEE
Confidence 36788888886531 1 223455655 244677 99999976542 2235699999999999999
Q ss_pred eeC---C--eeEEEEEEEeeCC
Q 023576 132 SFQ---G--KKQIVAFSVRPVT 148 (280)
Q Consensus 132 ~f~---~--~~~i~~~~ir~v~ 148 (280)
.-. | +..|.+..|..+.
T Consensus 80 ~~~~~~G~~r~~v~~~~i~~l~ 101 (104)
T 1txy_A 80 CHKAKNGLSKMVLHAEQIELID 101 (104)
T ss_dssp C--------CCEEEEEEEEEC-
T ss_pred eccCCCCCEEEEEEEEEEEECc
Confidence 742 1 1336666676654
No 71
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.11 E-value=0.12 Score=39.73 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=46.3
Q ss_pred CCCchhHHHHHHh-cCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYL-QQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i-~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+| ... .+++..+|++.++++...|..+|+.|.+.|.|....|.
T Consensus 34 ~l~~~~~~iL~~l~~~~------~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~ 88 (146)
T 2fbh_A 34 GLSQARWLVLLHLARHR------DSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVA 88 (146)
T ss_dssp CCTTTHHHHHHHHHHCS------SCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCB
T ss_pred CCCHHHHHHHHHHHHcC------CCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCC
Confidence 3566777899999 542 47999999999999999999999999999999987653
No 72
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=94.09 E-value=0.073 Score=41.57 Aligned_cols=53 Identities=9% Similarity=0.264 Sum_probs=40.0
Q ss_pred chhHHHHHHhcCC---CCCCCCCcc-CHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 216 DCDQMILDYLQQP---SSSERERGV-HVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 216 ~~~~~Vl~~i~~~---~~~~~e~Gv-~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
++-.+|.+.|+.. +.-...+=+ +..+++++|+++...||+|+..|..+|.|+.
T Consensus 14 PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~ 70 (134)
T 4ham_A 14 PIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIIT 70 (134)
T ss_dssp CHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE
Confidence 4666666665541 111233346 7899999999999999999999999999986
No 73
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=93.99 E-value=0.059 Score=38.74 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=41.9
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHh-CCCHHHHHHHHHHHHhCCee
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQL-KIPQKKIMDSIASLENEGLI 266 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-~~~~~~v~~al~~L~~eG~I 266 (280)
..+..+||++++.. .+||+-++|...+ +++.++.-++|..|..+|.|
T Consensus 13 ~~ie~~IL~l~~~~-----P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gki 60 (81)
T 2dk8_A 13 VEIENRIIELCHQF-----PHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQL 60 (81)
T ss_dssp HHHHHHHHHHHHHC-----SSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHhC-----CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCe
Confidence 45888999999974 4699999999999 58999999999999999876
No 74
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=93.98 E-value=0.12 Score=39.08 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=31.7
Q ss_pred Ccc-CHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 235 RGV-HVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 235 ~Gv-~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.-+ +..+|+++|+++...|++||..|.++|.|+..
T Consensus 31 ~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 31 EMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp CEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 345 89999999999999999999999999999864
No 75
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=93.91 E-value=0.43 Score=35.61 Aligned_cols=64 Identities=16% Similarity=0.270 Sum_probs=40.2
Q ss_pred eeEEEEEEEEEeee----cCCeeEEEEE-cCCc-----eEEEEEecccccChhhhccCCCCCEEEEEEEEeeeC
Q 023576 71 TNVTLVGLVYNKEE----RASDVNFTLD-DGTG-----RVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQ 134 (280)
Q Consensus 71 ~~V~iVG~V~~~~~----~~t~~~~~Ld-DgTG-----~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f~ 134 (280)
+++.+||.|.+++. ...-..|+|. |+.+ .+.++.+-+......-.+.+++|..|+|.|+||...
T Consensus 4 sn~vlvG~V~DVQ~Gfl~~~~V~Qftl~~d~e~~~eke~~tVRC~Gd~~~~~~lk~~lk~g~~v~V~GrLRm~p 77 (105)
T 4dka_C 4 SNALMIGRIADVQHGFLGAMTVTQYVLEVDGGASGEKEFIVIRCMGDNFPASLLKDQVKLGSRVLVQGTLRMNR 77 (105)
T ss_dssp CEEEEEEEEEEEEEEEETTEEEEEEEEEECC----CCEEEEEEEECC---------CCCTTCEEEEEEEEECCC
T ss_pred cceEEEEEEEEeeecccccceEEEEEEEEeCCCCCcccEEEEEEcCccchHHHHHHHHhCCCEEEEEeEEEeee
Confidence 57899999999987 3344455543 4443 467777765432112246799999999999999864
No 76
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=93.74 E-value=0.089 Score=39.42 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=42.4
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+.+..||.+|.. .++++.+|++.++++...|...|..|.+.|.|...-|.
T Consensus 25 ~~r~~IL~~L~~-------~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g 74 (108)
T 2kko_A 25 GRRLQILDLLAQ-------GERAVEAIATATGMNLTTASANLQALKSGGLVEARREG 74 (108)
T ss_dssp STTHHHHHHHTT-------CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEET
T ss_pred HHHHHHHHHHHc-------CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 456778888863 26899999999999999999999999999999766544
No 77
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=93.74 E-value=0.092 Score=37.07 Aligned_cols=54 Identities=15% Similarity=0.279 Sum_probs=46.3
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhC----CCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLK----IPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~----~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+..||.+|... .++++.+|++.++ ++...|...|+.|.+.|.|-..-|.
T Consensus 6 ~lt~~e~~vL~~L~~~------~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~g 63 (82)
T 1p6r_A 6 QISDAELEVMKVIWKH------SSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEG 63 (82)
T ss_dssp CCCHHHHHHHHHHHTS------SSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHcC------CCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecC
Confidence 5788999999999762 3799999999995 7899999999999999999765444
No 78
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=93.68 E-value=0.17 Score=39.62 Aligned_cols=54 Identities=17% Similarity=0.315 Sum_probs=46.3
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|...|.|....|.
T Consensus 40 ~lt~~~~~iL~~l~~~------~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~ 93 (155)
T 3cdh_A 40 GLRVPEWRVLACLVDN------DAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADA 93 (155)
T ss_dssp TCCHHHHHHHHHHSSC------SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC--
T ss_pred CCCHHHHHHHHHHHHC------CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCC
Confidence 4677888899999753 37999999999999999999999999999999987654
No 79
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=93.54 E-value=0.08 Score=41.01 Aligned_cols=55 Identities=20% Similarity=0.419 Sum_probs=43.0
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
+++..+..+|.+|.... ....++++.+|++.++++...|..+|..|.++|.|...
T Consensus 10 ~lt~~~~~~L~~l~~l~--~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~ 64 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYN--DSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK 64 (139)
T ss_dssp -CCHHHHHHHHHHHHHH--TTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcCHHHHHHHHHHHHHH--hcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEec
Confidence 35666777777664321 12357999999999999999999999999999999864
No 80
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=93.51 E-value=0.078 Score=40.69 Aligned_cols=56 Identities=14% Similarity=0.310 Sum_probs=48.1
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+.+++..+|++.++++...|...|+.|...|+|....|.
T Consensus 34 ~lt~~q~~vL~~l~~~----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 89 (127)
T 2frh_A 34 SISFEEFAVLTYISEN----KEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNE 89 (127)
T ss_dssp CCCHHHHHHHHHHHHT----CCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCS
T ss_pred CCCHHHHHHHHHHHhc----cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCC
Confidence 4677888899999763 2358999999999999999999999999999999986654
No 81
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=93.50 E-value=0.14 Score=39.51 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=46.5
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|....|.
T Consensus 33 glt~~q~~vL~~l~~~------~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~ 86 (140)
T 3hsr_A 33 DLTYTGYIVLMAIEND------EKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREE 86 (140)
T ss_dssp TCCHHHHHHHHHSCTT------CEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCCHHHHHHHHHHHHc------CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCC
Confidence 4677888899999752 48999999999999999999999999999999987664
No 82
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=93.42 E-value=0.15 Score=39.40 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=32.0
Q ss_pred Ccc-CHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 235 RGV-HVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 235 ~Gv-~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.=+ +..+|+++|+++...|++||..|..+|.|+..
T Consensus 33 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 33 DQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp CEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 446 89999999999999999999999999999864
No 83
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=93.37 E-value=1.3 Score=34.17 Aligned_cols=66 Identities=21% Similarity=0.246 Sum_probs=46.1
Q ss_pred eeEEEEEEEEEeeecCCeeEEEEEcCCc-eEEEEEecccccChhhhccCCCCCEEEEEEEEeeeCCeeEEEEEEEeeCCC
Q 023576 71 TNVTLVGLVYNKEERASDVNFTLDDGTG-RVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTN 149 (280)
Q Consensus 71 ~~V~iVG~V~~~~~~~t~~~~~LdDgTG-~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f~~~~~i~~~~ir~v~d 149 (280)
+.|+|||+|.+++.... +++|+++-| .|.+++-...+ + ..+.||.|+|++.. +..|.+.......+
T Consensus 23 k~VrivGkV~~~~~~g~--~~~l~s~Dg~~Vtv~l~~p~~------~--~l~~~vEViG~V~~---~~tI~~~~~~~fg~ 89 (121)
T 3kdf_A 23 KPVCFVGRLEKIHPTGK--MFILSDGEGKNGTIELMEPLD------E--EISGIVEVVGRVTA---KATILCTSYVQFKE 89 (121)
T ss_dssp CEEEEEEEEEEECTTSS--EEEEECTTSCEEEEECSSCCS------S--CCCSEEEEEEEECT---TSCEEEEEEEECCC
T ss_pred CeEEEEEEEEEEcCCCC--EEEEEeCCCCEEEEEeCCCCC------c--ccCcEEEEEEEECC---CCeEEEEEEEecCC
Confidence 68999999999875433 557777665 68888643211 1 22569999999984 45777777777665
No 84
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=93.34 E-value=0.19 Score=38.82 Aligned_cols=52 Identities=27% Similarity=0.455 Sum_probs=44.9
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
+++..+-.||.+|... |++..+|++.++++...|...|+.|...|.|...-|
T Consensus 35 ~lt~~~~~iL~~l~~~-------~~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~ 86 (146)
T 3tgn_A 35 ALTNTQEHILMLLSEE-------SLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKD 86 (146)
T ss_dssp CCCHHHHHHHHHHTTC-------CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---
T ss_pred CCCHHHHHHHHHHHhC-------CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccC
Confidence 5788999999999752 299999999999999999999999999999988765
No 85
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=93.33 E-value=0.94 Score=40.09 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=50.4
Q ss_pred eeEEEEEEEEEeee----c--CCeeEEEEEcCCc-eEEEEEecccccChhhhccC-CCCCEEEEE-EEEeeeCCeeEEEE
Q 023576 71 TNVTLVGLVYNKEE----R--ASDVNFTLDDGTG-RVVCKRWASEVFDTREMEAI-QDGMYVRLI-GNLKSFQGKKQIVA 141 (280)
Q Consensus 71 ~~V~iVG~V~~~~~----~--~t~~~~~LdDgTG-~I~~~~w~~~~~~~~~~~~~-~~G~yVrV~-G~l~~f~~~~~i~~ 141 (280)
..|.|+|+|+.+.. + .-.++|+|-|.+- .|.|.+|.+.. +..+.+ .+||.|++. -+++.|+++.++..
T Consensus 16 ~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~gl~v~iF~~~~---~~LP~v~~~GDII~l~~vki~~~~g~~~~v~ 92 (294)
T 1xjv_A 16 TIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNY---EALPIIYKNGDIVRFHRLKIQVYKKETQGIT 92 (294)
T ss_dssp EEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCCEEEEEEEESSG---GGSCCCCSTTCEEEEEEEEEEEETTEEEEEE
T ss_pred CeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCCCEEEEEECCCh---HHCCCCCCCCCEEEEEEEEEEEECCeEEEEc
Confidence 45788888887643 2 2378899999553 39999998653 235656 999999998 56788999988744
No 86
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.1 Score=39.74 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=32.1
Q ss_pred CeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEE
Q 023576 87 SDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIG 128 (280)
Q Consensus 87 t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G 128 (280)
..+.+.|-|.||.|.|.+|.+... .....|++|+.+.|.+
T Consensus 40 ~~~~~~L~De~G~I~at~~~~~~~--~f~~~l~eG~vy~Is~ 79 (114)
T 1ynx_A 40 KLFNVNFLDTSGEIRATAFNDFAT--KFNEILQEGKVYYVSK 79 (114)
T ss_dssp EEEEEEEEETTEEEEEEECHHHHH--HHHHHSCSSSEEEEES
T ss_pred eEEEEEEECCCCeEEEEECHHHHH--HHHhhcccCcEEEECC
Confidence 467889999999999999986532 2346799999888875
No 87
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=93.25 E-value=1.1 Score=33.75 Aligned_cols=76 Identities=13% Similarity=0.168 Sum_probs=48.7
Q ss_pred EEeeEEEEEEEEEe---e--e-c-CCeeEEEEE-------cCCceEEEEEecccccChhhhccCCCCCEEEEEEEEeee-
Q 023576 69 EITNVTLVGLVYNK---E--E-R-ASDVNFTLD-------DGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSF- 133 (280)
Q Consensus 69 ~i~~V~iVG~V~~~---~--~-~-~t~~~~~Ld-------DgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f- 133 (280)
..+.|.|+|.+..- + . . .....|+|. |.|--|.|..|...++ .....+..|+.|.|.|+|+.-
T Consensus 10 ~~~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE--~~~~yl~KG~~V~VeGrL~~r~ 87 (108)
T 3koj_A 10 HMNSCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQ--ELQDRCRLNDEVVLEGRLRINS 87 (108)
T ss_dssp SCEEEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHHHH--HHHHHCCTTCEEEEEEEEEEEC
T ss_pred ccceEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHHHH--HHHHhCCCCCEEEEEEEEEeee
Confidence 35788999998652 1 1 2 234555553 4566799999986542 223568999999999999964
Q ss_pred -CC---e----eEEEEEEEee
Q 023576 134 -QG---K----KQIVAFSVRP 146 (280)
Q Consensus 134 -~~---~----~~i~~~~ir~ 146 (280)
.+ + ..|.+..|.|
T Consensus 88 y~~kdG~kr~~tEVva~~i~P 108 (108)
T 3koj_A 88 LLKPDGNREKQTELTVTRVHH 108 (108)
T ss_dssp --------CCEEEEEEEEEEC
T ss_pred EECCCCCEEEEEEEEEEEEEC
Confidence 22 1 3466666655
No 88
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=93.25 E-value=0.1 Score=38.07 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=43.5
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+..++..+... ..++++.+|++.++++...|...|..|.+.|.|...-+.
T Consensus 18 ~l~~~~~~~l~~l~~~-----~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~ 72 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEI-----EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp TCCHHHHHHHHHHHHH-----CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred cCCHHHHHHHHHHHHc-----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccc
Confidence 4566676666554331 247999999999999999999999999999999887553
No 89
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=93.22 E-value=0.13 Score=39.32 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=46.9
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|...-|.
T Consensus 26 ~l~~~~~~iL~~l~~~------~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~ 79 (138)
T 3bpv_A 26 NLTDAQVACLLRIHRE------PGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDP 79 (138)
T ss_dssp TCCHHHHHHHHHHHHS------TTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 4677888899999763 47899999999999999999999999999999886543
No 90
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=93.22 E-value=0.13 Score=39.56 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=46.6
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .++++.+|++.++++...|..+|+.|.+.|.|....|.
T Consensus 26 ~lt~~~~~iL~~l~~~------~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~ 79 (144)
T 1lj9_A 26 SLTRGQYLYLVRVCEN------PGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDA 79 (144)
T ss_dssp TCTTTHHHHHHHHHHS------TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHC------cCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCC
Confidence 3566777899998753 38999999999999999999999999999999987654
No 91
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=93.18 E-value=0.19 Score=39.03 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=31.8
Q ss_pred Ccc-CHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 235 RGV-HVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 235 ~Gv-~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.=+ +..+|+++|+++...|++||..|..+|.|+..
T Consensus 26 ~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 26 QRVPSTNELAAFHRINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp SCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEE
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 345 89999999999999999999999999999864
No 92
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=93.15 E-value=0.16 Score=39.35 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=47.6
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|+|....|.
T Consensus 28 ~lt~~q~~iL~~l~~~------~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 81 (145)
T 3g3z_A 28 DLNYNLFAVLYTLATE------GSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGE 81 (145)
T ss_dssp TCCHHHHHHHHHHHHH------CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCS
T ss_pred CCCHHHHHHHHHHHHC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCC
Confidence 4677888899999763 26999999999999999999999999999999987664
No 93
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=93.12 E-value=0.14 Score=37.26 Aligned_cols=54 Identities=17% Similarity=0.322 Sum_probs=46.3
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHH----HHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNEL----SEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I----~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+| ++.++++...|...|+.|.+.|.|....|.
T Consensus 5 ~lt~~q~~iL~~l~~~------~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~ 62 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYDN------EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQER 62 (99)
T ss_dssp SSBCHHHHHHHHHTTC------TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHHc------CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 4677888999999753 37899999 788899999999999999999999876554
No 94
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=93.11 E-value=0.23 Score=38.27 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=46.1
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|. . .+++..+|++.++++...|..+|+.|.+.|.|...-|.
T Consensus 34 ~l~~~~~~iL~~l~-~------~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~ 86 (146)
T 2gxg_A 34 NLSYLDFLVLRATS-D------GPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDR 86 (146)
T ss_dssp TCCHHHHHHHHHHT-T------SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHh-c------CCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCC
Confidence 35678888999987 3 37899999999999999999999999999999876553
No 95
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=93.06 E-value=0.13 Score=44.50 Aligned_cols=60 Identities=18% Similarity=0.347 Sum_probs=50.5
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
+++..+..||.+|.+. .++++.+|++.++++.+.|...|..|.+.|.|-..-....|..|
T Consensus 149 ~L~~~~~~IL~~L~~~------~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r~~~~~LT 208 (244)
T 2wte_A 149 DYSREEMKLLNVLYET------KGTGITELAKMLDKSEKTLINKIAELKKFGILTQKGKDRKVELN 208 (244)
T ss_dssp CCCHHHHHHHHHHHHH------TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTTEEEEC
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCccEEEEC
Confidence 6788899999998753 37999999999999999999999999999999876444456554
No 96
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=93.03 E-value=0.17 Score=39.40 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=47.3
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|..+|+.|...|.|....|.
T Consensus 37 ~lt~~~~~iL~~l~~~------~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~ 90 (152)
T 3bj6_A 37 GVTVGQRAILEGLSLT------PGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNP 90 (152)
T ss_dssp TCCHHHHHHHHHHHHS------TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred CCCHHHHHHHHHHHhC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCc
Confidence 4677888899999753 27999999999999999999999999999999987654
No 97
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=93.01 E-value=0.14 Score=39.25 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=46.3
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|...-|
T Consensus 28 ~l~~~~~~iL~~l~~~------~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~ 80 (142)
T 3bdd_A 28 GISLTRYSILQTLLKD------APLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRN 80 (142)
T ss_dssp SSCHHHHHHHHHHHHH------CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHhC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 3566788899999753 3799999999999999999999999999999988765
No 98
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=92.96 E-value=0.29 Score=37.36 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=46.3
Q ss_pred eeEEEEEEEEEeeecCCeeEEEEEcCCc-eEEEEEecccccChhhhccCCCCCEEEEEEEEeeeCCe---eEEEEEEEee
Q 023576 71 TNVTLVGLVYNKEERASDVNFTLDDGTG-RVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGK---KQIVAFSVRP 146 (280)
Q Consensus 71 ~~V~iVG~V~~~~~~~t~~~~~LdDgTG-~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f~~~---~~i~~~~ir~ 146 (280)
..|+|||+|.+... -+++|...+| .|.|+.-.+ ..++.+.+|.|+|++..-.+. ..|.+....+
T Consensus 19 ~~VrivGkV~~~~g----~~~~l~s~d~~~Vtv~l~~~--------~~~~~~~~vEViG~V~~~~~~~~~~~I~~~~~~~ 86 (114)
T 4gop_A 19 QTVRIVGKVHKVTG----NTLLMQTSDLGNVEIAMTPD--------SDVSSSTFVEVTGKVSDAGSSFQANQIREFTTVD 86 (114)
T ss_dssp SEEEEEEEEEEEET----TEEEEECTTSCEEEEECCSS--------CCGGGCSEEEEEEEECTTSSEEEEEEEEECSCCC
T ss_pred CeEEEEEEEeeeCC----CEEEEEeCCCCEEEEEeCCC--------CCcccCcEEEEEEEEcCCCCcccCCeEEEEEEEe
Confidence 68999999999874 3678887765 688775432 224578999999999965443 6677766555
Q ss_pred CCC
Q 023576 147 VTN 149 (280)
Q Consensus 147 v~d 149 (280)
.-+
T Consensus 87 ~g~ 89 (114)
T 4gop_A 87 CGH 89 (114)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 99
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=92.92 E-value=0.17 Score=39.28 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=45.2
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|...-|.
T Consensus 37 ~l~~~~~~iL~~l~~~------~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 90 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSA------SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
T ss_dssp TCCHHHHHHHHHHHHS------SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----
T ss_pred CCCHHHHHHHHHHHcC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 4677888999999763 28999999999999999999999999999999887553
No 100
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=92.91 E-value=0.1 Score=40.29 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=42.3
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|...|.|....|.
T Consensus 34 ~lt~~~~~vL~~l~~~------~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~ 87 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQ------RGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNP 87 (142)
T ss_dssp CCCHHHHHHHHHHHHT------TTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----
T ss_pred CCCHHHHHHHHHHHhC------CCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCC
Confidence 4677888999999863 37999999999999999999999999999999987664
No 101
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=92.88 E-value=0.13 Score=39.32 Aligned_cols=54 Identities=22% Similarity=0.270 Sum_probs=46.7
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|....|.
T Consensus 35 ~l~~~~~~iL~~l~~~------~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~ 88 (140)
T 2nnn_A 35 GLTPTQWAALVRLGET------GPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADP 88 (140)
T ss_dssp CCCHHHHHHHHHHHHH------SSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEET
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCC
Confidence 4667788899999753 28999999999999999999999999999999886543
No 102
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=92.83 E-value=0.17 Score=39.44 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=44.6
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
+++..+-.||.+|... .++++.+|++.++++...|...|+.|...|.|..
T Consensus 38 ~lt~~~~~iL~~l~~~------~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 38 GLTIQQLAMINVIYST------PGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp TCCHHHHHHHHHHHHS------TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHHHHHC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 3667888899999763 3799999999999999999999999999999988
No 103
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=92.81 E-value=0.16 Score=37.67 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=43.2
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
.+.+..||.+|.. .++++.+|++.++++.+.|...|..|.+.|.|...-+.
T Consensus 25 ~~~r~~IL~~L~~-------~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 25 DYNRIRIMELLSV-------SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG 75 (106)
T ss_dssp SHHHHHHHHHHHH-------CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CHHHHHHHHHHHh-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4567789998862 25899999999999999999999999999999765444
No 104
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=92.79 E-value=0.13 Score=40.04 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=44.7
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... +.+++..+|++.++++...|...|+.|...|+|....|.
T Consensus 36 glt~~q~~vL~~l~~~-----~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~ 90 (150)
T 3fm5_A 36 GLRVRSYSVLVLACEQ-----AEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDP 90 (150)
T ss_dssp TCCHHHHHHHHHHHHS-----TTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC----
T ss_pred CCCHHHHHHHHHHHhC-----CCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCc
Confidence 4667788899998642 246899999999999999999999999999999987665
No 105
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=92.75 E-value=0.29 Score=37.71 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=31.7
Q ss_pred Ccc-CHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 235 RGV-HVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 235 ~Gv-~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.=+ +..+|+++|+++...|++||..|.++|.|+..
T Consensus 35 ~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 35 DKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 345 59999999999999999999999999999874
No 106
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=92.75 E-value=0.13 Score=39.72 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=46.5
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|...-|.
T Consensus 34 ~lt~~~~~iL~~l~~~------~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~ 87 (143)
T 3oop_A 34 DVTPEQWSVLEGIEAN------EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREIST 87 (143)
T ss_dssp SSCHHHHHHHHHHHHH------SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCCHHHHHHHHHHHHc------CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCC
Confidence 4667888899999763 48999999999999999999999999999999987654
No 107
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=92.70 E-value=0.16 Score=40.09 Aligned_cols=54 Identities=28% Similarity=0.411 Sum_probs=46.9
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|...|+|...-|.
T Consensus 47 ~lt~~q~~vL~~l~~~------~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 100 (159)
T 3s2w_A 47 GIGSGQFPFLMRLYRE------DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDE 100 (159)
T ss_dssp TCCTTTHHHHHHHHHS------CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCCHHHHHHHHHHHHC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 4566777899999753 48999999999999999999999999999999987664
No 108
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=92.68 E-value=0.23 Score=33.11 Aligned_cols=44 Identities=18% Similarity=0.347 Sum_probs=38.1
Q ss_pred HHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 220 MILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 220 ~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
.+|..|.+. ..|++..|++.+++.+.++-+.+|+.|..+|.+--
T Consensus 7 aLLall~s~-----~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRK 50 (68)
T 3i71_A 7 ELLALLTSV-----RQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRK 50 (68)
T ss_dssp HHHHHHHHC-----TTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHH-----hccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhh
Confidence 577777664 36999999999999999999999999999998743
No 109
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=92.63 E-value=0.1 Score=38.97 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=40.9
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
+...+|+..+..+ ...++..+|++.++++...|+++|..|.++|.|...
T Consensus 18 ~~~l~Il~~l~~~-----g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 18 DDVIDVLRILLDK-----GTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp STTHHHHHHHHHH-----CSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred hHHHHHHHHHHHc-----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4667788877543 224899999999999999999999999999999764
No 110
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=92.63 E-value=0.17 Score=40.52 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=46.8
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... ..++++.+|++.++++...|...|+.|...|+|....|.
T Consensus 50 glt~~q~~vL~~L~~~-----~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~ 104 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQL-----PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCA 104 (166)
T ss_dssp TCCHHHHHHHHHHHHS-----CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC---
T ss_pred CCCHHHHHHHHHHHHc-----CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCC
Confidence 6788888999999752 247999999999999999999999999999999988764
No 111
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=92.62 E-value=0.13 Score=39.83 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=44.2
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
+++.-+-.||-+|.... .....+.+..+|++++++++.+|..+|+.|+..|.|--..|
T Consensus 29 gLt~~e~~vll~L~~~~-~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFF-EEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp TCCHHHHHHHHHHHHHH-TTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCCHHHHHHHHHHHHHH-hcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 45666666766664321 12345689999999999999999999999999999988655
No 112
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=92.55 E-value=0.22 Score=38.30 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=45.5
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
+++..+..||.+|... +.++++.+|++.++++...|...|+.|.+.|.|....|
T Consensus 23 gl~~~~~~il~~L~~~-----~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~ 76 (152)
T 1ku9_A 23 GLNKSVGAVYAILYLS-----DKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWI 76 (152)
T ss_dssp TCCHHHHHHHHHHHHC-----SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCChhHHHHHHHHHHc-----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 4667788899988421 24799999999999999999999999999999988653
No 113
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=92.54 E-value=0.23 Score=48.80 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=52.5
Q ss_pred eeEEEEEEEEEeeecCCeeEEEEEcCCceEEEEEecccccC--hhhhccCCCCCEEEEEEEEeee----------CCeeE
Q 023576 71 TNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFD--TREMEAIQDGMYVRLIGNLKSF----------QGKKQ 138 (280)
Q Consensus 71 ~~V~iVG~V~~~~~~~t~~~~~LdDgTG~I~~~~w~~~~~~--~~~~~~~~~G~yVrV~G~l~~f----------~~~~~ 138 (280)
..|+|.|+|..++.. .-+.|-|+||.|.|.+=.+.... ......+..|+.|.|.|.|+.- .+...
T Consensus 25 ~~V~l~GwV~~~R~~---~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiE 101 (617)
T 4ah6_A 25 QEVTLCGWIQYRRQN---TFLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQENPKMPTGEIE 101 (617)
T ss_dssp CEEEEEEEECCCCTT---TEEEEECSSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCCCTTSTTTTEE
T ss_pred CEEEEEEEeeeecCe---EEEEEEeCCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCcEE
Confidence 369999999987643 35689999999999864332110 1224579999999999999752 24577
Q ss_pred EEEEEEeeC
Q 023576 139 IVAFSVRPV 147 (280)
Q Consensus 139 i~~~~ir~v 147 (280)
|.+..|..+
T Consensus 102 l~~~~i~vL 110 (617)
T 4ah6_A 102 IKVKTAELL 110 (617)
T ss_dssp EEEEEEEEE
T ss_pred EEEeEEEEe
Confidence 777776643
No 114
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=92.47 E-value=0.19 Score=39.18 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=46.2
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|...|.|....|.
T Consensus 44 ~l~~~~~~iL~~l~~~------~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~ 97 (153)
T 2pex_A 44 DLTYPQYLVMLVLWET------DERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAA 97 (153)
T ss_dssp TCCHHHHHHHHHHHHS------CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCCHHHHHHHHHHHhC------CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCc
Confidence 4677888899999753 37999999999999999999999999999999987654
No 115
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=92.46 E-value=1.3 Score=35.16 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=45.8
Q ss_pred eeEEEEEEEEEeeecCCeeEEEEEcCCc-eEEEEEecccccChhhhccCCCCCEEEEEEEEeeeCCeeEEEEEEEeeCCC
Q 023576 71 TNVTLVGLVYNKEERASDVNFTLDDGTG-RVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTN 149 (280)
Q Consensus 71 ~~V~iVG~V~~~~~~~t~~~~~LdDgTG-~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f~~~~~i~~~~ir~v~d 149 (280)
..|+|||+|.++.... -+++|....| .|.|+.-..- .-..+.||.|+|++.. +..|.+..+.+..|
T Consensus 44 k~VriVGkV~~~~~~G--~~~~l~s~Dg~~VtV~l~~pL--------~~~~~~~VEViG~V~~---~~tI~~~~~~~fGd 110 (142)
T 2pi2_E 44 KPVCFVGRLEKIHPTG--KMFILSDGEGKNGTIELMEPL--------DEEISGIVEVVGRVTA---KATILCTSYVQFKE 110 (142)
T ss_dssp CEEEEEEEEEEECTTS--SEEEEECTTSCEEEEECSSCC--------SSCCCSEEEEEEEECT---TSCEEEEEEEECCC
T ss_pred CEEEEEEEEeEEcCCC--CEEEEEeCCCcEEEEEeCCCC--------CccCCCEEEEEEEECC---CCcEEEEEEEecCC
Confidence 6899999999985433 3557777655 6888753210 1134789999999966 45677777777765
No 116
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=92.36 E-value=0.19 Score=38.97 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=46.8
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|...|.|....|.
T Consensus 39 ~l~~~~~~iL~~l~~~------~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 92 (150)
T 2rdp_A 39 PITPPQFVALQWLLEE------GDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDE 92 (150)
T ss_dssp SSCHHHHHHHHHHHHH------CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCC
Confidence 4567888899999763 37999999999999999999999999999999887553
No 117
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=92.32 E-value=0.35 Score=35.05 Aligned_cols=51 Identities=24% Similarity=0.396 Sum_probs=43.3
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
.+.+..||.+|.+ ..+++.+|++.++++...|...|..|.+.|.|-..-+.
T Consensus 22 ~~~r~~Il~~L~~-------~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (98)
T 3jth_A 22 NERRLQILCMLHN-------QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEA 72 (98)
T ss_dssp SHHHHHHHHHTTT-------SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CHHHHHHHHHHhc-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3467788988864 36899999999999999999999999999999766544
No 118
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=92.29 E-value=0.2 Score=38.28 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=46.6
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|...|.|....|.
T Consensus 31 ~lt~~~~~iL~~l~~~------~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~ 84 (138)
T 1jgs_A 31 DITAAQFKVLCSIRCA------ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNP 84 (138)
T ss_dssp TSCHHHHHHHHHHHHH------SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECT
T ss_pred CCCHHHHHHHHHHHhc------CCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCc
Confidence 4667788899998753 37899999999999999999999999999999986554
No 119
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=92.28 E-value=0.22 Score=39.19 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=44.8
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|..+|+.|...|.|....|.
T Consensus 46 ~lt~~~~~iL~~l~~~------~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~ 99 (162)
T 2fa5_A 46 GMAIPEWRVITILALY------PGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHG 99 (162)
T ss_dssp CCCHHHHHHHHHHHHS------TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----
T ss_pred CCCHHHHHHHHHHHhC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCC
Confidence 4677888899999752 37999999999999999999999999999999876543
No 120
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=92.12 E-value=0.16 Score=45.79 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=46.6
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccc
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYK 276 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk 276 (280)
.+.+++||++|++. ...-++-++|+++|+++...|.++|..|.++|+.-..+...-|+
T Consensus 2 ~~~~~~iL~~L~~~----~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~~~GY~ 59 (323)
T 3rkx_A 2 SKYSQDVLQLLYKN----KPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHL 59 (323)
T ss_dssp -CHHHHHHHHHHHH----TTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEETTTEEE
T ss_pred chHHHHHHHHHHhC----CCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeCCCeEE
Confidence 35788999999753 23468999999999999999999999999999965555555555
No 121
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=92.11 E-value=0.21 Score=39.43 Aligned_cols=54 Identities=20% Similarity=0.369 Sum_probs=46.8
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|...|.|....|.
T Consensus 49 ~lt~~~~~iL~~l~~~------~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~ 102 (162)
T 3cjn_A 49 GLSTAKMRALAILSAK------DGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDS 102 (162)
T ss_dssp TCCHHHHHHHHHHHHS------CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred CCCHHHHHHHHHHHHC------CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCC
Confidence 4677888899999753 37999999999999999999999999999999886553
No 122
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=92.09 E-value=0.16 Score=40.29 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=48.0
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .++++.+|++.++++...|...|+.|...|+|....|.
T Consensus 43 glt~~q~~iL~~l~~~------~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 96 (162)
T 3k0l_A 43 EISLPQFTALSVLAAK------PNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDP 96 (162)
T ss_dssp TCCHHHHHHHHHHHHC------TTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECC
T ss_pred CCCHHHHHHHHHHHHC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCC
Confidence 5677888999999763 38999999999999999999999999999999987764
No 123
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=92.06 E-value=0.099 Score=37.79 Aligned_cols=40 Identities=25% Similarity=0.362 Sum_probs=37.1
Q ss_pred CCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCc
Q 023576 234 ERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEF 273 (280)
Q Consensus 234 e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~ 273 (280)
-.=++++.|++.|+++++++++.|..|+.+|.|+-.||.-
T Consensus 28 Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~ 67 (84)
T 1ufm_A 28 YNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQI 67 (84)
T ss_dssp CSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETT
T ss_pred cCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCC
Confidence 3578999999999999999999999999999999999873
No 124
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=92.05 E-value=0.17 Score=40.43 Aligned_cols=54 Identities=13% Similarity=0.051 Sum_probs=47.1
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .++++.+|++.++++...|...|+.|...|.|....|.
T Consensus 42 ~lt~~~~~iL~~L~~~------~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~ 95 (168)
T 2nyx_A 42 NITIPQFRTLVILSNH------GPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHP 95 (168)
T ss_dssp SCCHHHHHHHHHHHHH------CSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCC
Confidence 4677888899999763 37999999999999999999999999999999886654
No 125
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=92.03 E-value=0.18 Score=39.41 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=45.1
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|...|.|....|.
T Consensus 38 ~lt~~q~~iL~~l~~~------~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~ 91 (149)
T 4hbl_A 38 GITYSQYLVMLTLWEE------NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQ 91 (149)
T ss_dssp TCCHHHHHHHHHHHHS------SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC----
T ss_pred CCCHHHHHHHHHHHHC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCC
Confidence 4677888899999753 48999999999999999999999999999999987654
No 126
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=92.01 E-value=0.33 Score=35.68 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=36.8
Q ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCccccccC
Q 023576 236 GVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFAR 279 (280)
Q Consensus 236 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t~ 279 (280)
|+...+|+..+++++..++..+++|.+.|.|-.+- ..|..|+
T Consensus 20 ~~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~--~~~~LT~ 61 (95)
T 1r7j_A 20 GSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEG--KQYMLTK 61 (95)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET--TEEEECH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEC--CeeEECh
Confidence 38999999999999999999999999999998863 3477764
No 127
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=92.00 E-value=0.24 Score=37.88 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=41.4
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+.+..||.+|... .++++.+|++.++++.+.|...|..|.+.|.|-..-+.
T Consensus 42 ~~rl~IL~~L~~~------~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~g 92 (122)
T 1u2w_A 42 ENRAKITYALCQD------EELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEG 92 (122)
T ss_dssp HHHHHHHHHHHHS------SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC---
T ss_pred HHHHHHHHHHHHC------CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4566788888742 36899999999999999999999999999999775443
No 128
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=91.99 E-value=0.17 Score=39.55 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=46.8
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .++++.+|++.++++...|...|+.|.+.|+|....|.
T Consensus 34 ~l~~~~~~iL~~l~~~------~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~ 87 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKH------GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNT 87 (155)
T ss_dssp TCCHHHHHHHHHHHHH------SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCC
Confidence 4667788899999752 37999999999999999999999999999999887553
No 129
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=91.98 E-value=0.16 Score=38.86 Aligned_cols=54 Identities=20% Similarity=0.298 Sum_probs=46.8
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|...|.|....|.
T Consensus 33 ~lt~~~~~iL~~l~~~------~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~ 86 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQQ------GEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAP 86 (142)
T ss_dssp TCCHHHHHHHHHHHHH------CSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCC
Confidence 4677888899999763 37999999999999999999999999999999876553
No 130
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=91.98 E-value=0.19 Score=38.68 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=46.7
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|.+.|.|....|.
T Consensus 30 ~l~~~~~~iL~~l~~~------~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~ 83 (145)
T 2a61_A 30 GITPAQFDILQKIYFE------GPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDP 83 (145)
T ss_dssp TCCHHHHHHHHHHHHH------CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCC
Confidence 3667888899999753 37999999999999999999999999999999886543
No 131
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=91.84 E-value=0.27 Score=37.79 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=41.8
Q ss_pred HHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC-ccccc
Q 023576 219 QMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE-FHYKF 277 (280)
Q Consensus 219 ~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd-~hfk~ 277 (280)
-.||.+|.... .+..++..+|+++++++...|+++|..|...|.|.++-.. -.|..
T Consensus 12 l~iL~~la~~~---~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L 68 (129)
T 2y75_A 12 LTIMIELAKKH---GEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVL 68 (129)
T ss_dssp HHHHHHHHHTT---TSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEE
T ss_pred HHHHHHHHhCC---CCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEe
Confidence 34666665431 2346899999999999999999999999999999886432 24543
No 132
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=91.79 E-value=1.9 Score=32.85 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=35.6
Q ss_pred EEEEEecccccChhhhccCCCCCEEEEEEEEeee--CC-eeEEEEEEEeeCCC
Q 023576 100 VVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSF--QG-KKQIVAFSVRPVTN 149 (280)
Q Consensus 100 I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f--~~-~~~i~~~~ir~v~d 149 (280)
|.|+.|-..++ ....+..|+.|.|.|+|+.- ++ +..|.|..|..+..
T Consensus 49 i~vv~~Gk~AE---~~~~l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~~ 98 (115)
T 3fhw_A 49 ISAVALGDLAL---LLADTPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAG 98 (115)
T ss_dssp EEEEEETHHHH---HHTTCCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECCC
T ss_pred EEEEEEhHHHH---hhhccCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcCC
Confidence 88999976542 24679999999999999973 23 34688888887754
No 133
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=91.69 E-value=0.1 Score=40.69 Aligned_cols=56 Identities=23% Similarity=0.401 Sum_probs=41.2
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+.+++..+|++.++++...|...|+.|...|.|....|.
T Consensus 38 glt~~q~~vL~~l~~~----~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~ 93 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYEN----QESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPE 93 (148)
T ss_dssp TCCHHHHHHHHHHHHH----TTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC---
T ss_pred CCCHHHHHHHHHHHhC----CCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCC
Confidence 4677888999999763 2358999999999999999999999999999999887664
No 134
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=91.61 E-value=0.2 Score=39.60 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=46.9
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|...|+|...-|.
T Consensus 50 glt~~q~~vL~~l~~~------~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~ 103 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSAY------GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISD 103 (161)
T ss_dssp TCCHHHHHHHHHHHHH------SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC--
T ss_pred CCCHHHHHHHHHHHhC------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCc
Confidence 5777888899999763 38999999999999999999999999999999987664
No 135
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=91.60 E-value=0.16 Score=36.58 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=42.7
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecC
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTI 270 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTi 270 (280)
++.+..||.+|... .++++.+|++.++++...|...|..|.+.|.|...-
T Consensus 15 ~~~~~~iL~~L~~~------~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 15 NPVRLGIMIFLLPR------RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp SHHHHHHHHHHHHH------SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred ChHHHHHHHHHHhc------CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 34677899988642 368999999999999999999999999999998654
No 136
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=91.59 E-value=0.25 Score=36.69 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=42.6
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
.+.+..||.+|.. .++++.+|++.++++...|...|..|.+.|.|...-+
T Consensus 20 ~~~r~~IL~~L~~-------~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 20 DETRWEILTELGR-------ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp CHHHHHHHHHHHH-------SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ChHHHHHHHHHHc-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 3577889999832 2589999999999999999999999999999976544
No 137
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=91.55 E-value=0.19 Score=38.83 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=46.6
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCc
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEF 273 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~ 273 (280)
+++..+-.||.+|... .+ +..+|++.++++...|...|+.|.+.|.|....|..
T Consensus 34 ~lt~~~~~iL~~l~~~------~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~ 87 (144)
T 3f3x_A 34 NLSYLDFSILKATSEE------PR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSK 87 (144)
T ss_dssp SCCHHHHHHHHHHHHS------CE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred CCCHHHHHHHHHHHHC------CC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCC
Confidence 4667788899999763 24 999999999999999999999999999999876653
No 138
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=91.53 E-value=0.17 Score=35.77 Aligned_cols=50 Identities=16% Similarity=0.434 Sum_probs=40.0
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHh-CCCHHHHHHHHHHHHhCCee
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQL-KIPQKKIMDSIASLENEGLI 266 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-~~~~~~v~~al~~L~~eG~I 266 (280)
.++++.|+++|+..+. .-.=.=+.++++.+ .....+|.+++..|++||.+
T Consensus 2 ee~K~~Ile~l~~k~~--~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~l 52 (78)
T 1ucr_A 2 EEAKQKVVDFLNSKSG--SKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVL 52 (78)
T ss_dssp CHHHHHHHHHHSSHHH--HSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSE
T ss_pred hHHHHHHHHHHHhccc--ccccchHHHHHHHccccCHHHHHHHHHHHHhcCce
Confidence 4688999999987421 11134578999999 79999999999999999976
No 139
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=91.50 E-value=0.19 Score=39.35 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=46.9
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .++++.+|++.++++...|...|+.|.+.|.|...-|.
T Consensus 41 ~lt~~~~~iL~~l~~~------~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~ 94 (154)
T 2eth_A 41 DMKTTELYAFLYVALF------GPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDP 94 (154)
T ss_dssp HSBHHHHHHHHHHHHH------CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECT
T ss_pred CCCHHHHHHHHHHHHc------CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCC
Confidence 4677888899999763 27999999999999999999999999999999886553
No 140
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=91.50 E-value=0.38 Score=35.18 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=43.4
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
.+.+..||.+|.+ ..+++.+|++.++++...|...|..|.+.|.|-..-+.
T Consensus 22 ~~~r~~Il~~L~~-------~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (102)
T 3pqk_A 22 HPVRLMLVCTLVE-------GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNI 72 (102)
T ss_dssp SHHHHHHHHHHHT-------CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSS
T ss_pred CHHHHHHHHHHHh-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4567789998864 14899999999999999999999999999999876554
No 141
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=91.49 E-value=0.28 Score=42.20 Aligned_cols=54 Identities=20% Similarity=0.388 Sum_probs=45.1
Q ss_pred HHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 219 QMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 219 ~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
-.||++|.+. ..++++.||+++++++.+.+...|..|.+.|.|... ++..|..+
T Consensus 11 l~iL~~l~~~-----~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~-~~~~Y~lg 64 (249)
T 1mkm_A 11 FEILDFIVKN-----PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK-KDKRYVPG 64 (249)
T ss_dssp HHHHHHHHHC-----SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC-TTSCEEEC
T ss_pred HHHHHHHHhC-----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC-CCCcEEEC
Confidence 3578888652 347999999999999999999999999999999986 56677653
No 142
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=91.42 E-value=0.51 Score=44.28 Aligned_cols=76 Identities=12% Similarity=0.200 Sum_probs=53.2
Q ss_pred eeEEEEEcCCceEEEEEeccccc----------------Chhh----hccCC-CCCEEEEEEEEeeeCCe--eEEEEEEE
Q 023576 88 DVNFTLDDGTGRVVCKRWASEVF----------------DTRE----MEAIQ-DGMYVRLIGNLKSFQGK--KQIVAFSV 144 (280)
Q Consensus 88 ~~~~~LdDgTG~I~~~~w~~~~~----------------~~~~----~~~~~-~G~yVrV~G~l~~f~~~--~~i~~~~i 144 (280)
.+.+.|.|+||.+.|..|.+.+. +... ...+. .--.+||..+...|+++ ...++..+
T Consensus 345 ~l~~~v~D~Tg~~~~~~F~~~a~~llG~sa~el~~~~~~d~~~~~~~~~~~~~k~~~f~~~~k~~~y~~~~r~~~~v~~~ 424 (444)
T 4gop_C 345 ILSTNVADATGQMWLSGFNEDATQLIGMSAGELHKLREESESEFSAALHRAANRMYMFNCRAKMDTFNDTARVRYTISRA 424 (444)
T ss_dssp CEEEEEEETTEEEEEEECHHHHHHHTTSCHHHHHHHHTTCHHHHHHHHHTTSSCEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEehHHHHHHcCCCHHHHHHHHhcChHHHHHHHHHhhCcEEEEEEEEEeeeeCCeeEEEEEEEEe
Confidence 46679999999999999975432 0000 11111 11356777777799987 55778888
Q ss_pred eeCCCchHHHHHHHHHHHHH
Q 023576 145 RPVTNFDEVTCHYIECIYFH 164 (280)
Q Consensus 145 r~v~d~Nei~~H~Le~i~~~ 164 (280)
.|+ |+.+...++|+.|..+
T Consensus 425 ~~~-d~~~~~~~l~~~i~~~ 443 (444)
T 4gop_C 425 APV-DFAKAGMELVDAIRAY 443 (444)
T ss_dssp EEC-CHHHHHHHHHHHHHHH
T ss_pred eeC-CHHHHHHHHHHHHHhh
Confidence 888 6888899999988765
No 143
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=91.28 E-value=1.1 Score=36.05 Aligned_cols=79 Identities=23% Similarity=0.260 Sum_probs=49.9
Q ss_pred EEeeEEEEEEEEE---eee---cCCeeEEEEE------cC-Cc-------eEEEEEecccccChhhhccCCCCCEEEEEE
Q 023576 69 EITNVTLVGLVYN---KEE---RASDVNFTLD------DG-TG-------RVVCKRWASEVFDTREMEAIQDGMYVRLIG 128 (280)
Q Consensus 69 ~i~~V~iVG~V~~---~~~---~~t~~~~~Ld------Dg-TG-------~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G 128 (280)
.++.|.|+|.|.. ++. ....+.|+|- |. +| -|.|..|...++ .....++.|+.|.|.|
T Consensus 7 ~mN~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae--~~~~~l~KG~~V~VeG 84 (158)
T 3tqy_A 7 GVNKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAE--IVGEYLRKGSKIYIEG 84 (158)
T ss_dssp CEEEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHH--HHHHHCCTTCEEEEEE
T ss_pred ccCEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHH--HHHhhcCCCCEEEEEE
Confidence 3788999999855 221 2245566552 22 34 378888976431 1234599999999999
Q ss_pred EEee--eC---Ce----eEEEEEEEeeCCC
Q 023576 129 NLKS--FQ---GK----KQIVAFSVRPVTN 149 (280)
Q Consensus 129 ~l~~--f~---~~----~~i~~~~ir~v~d 149 (280)
+|+. |. |+ ..|.+..|..+..
T Consensus 85 ~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~ 114 (158)
T 3tqy_A 85 SLRTRKWQDKNGVDRYTTEIIANEMHMLDN 114 (158)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEEEEEECC-
T ss_pred EEEeeeEECCCCCEEEEEEEEEeEEEEccC
Confidence 9986 42 32 3466777776654
No 144
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=91.21 E-value=0.29 Score=38.40 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=47.8
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCc
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEF 273 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~ 273 (280)
+++.-|-.||.+|... .+.+++..+|++.++++...|...|+.|...|+|...-|.+
T Consensus 32 gLt~~q~~vL~~L~~~----~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~ 88 (147)
T 4b8x_A 32 GLTFARYEALVLLTFS----KSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPN 88 (147)
T ss_dssp TCCHHHHHHHHHHHTS----GGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC-
T ss_pred CCCHHHHHHHHHHHHC----CCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCC
Confidence 4677777899988653 23479999999999999999999999999999999887753
No 145
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=91.19 E-value=0.28 Score=40.13 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=48.7
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... ...++++.+|++.++++...|...|..|...|+|....|.
T Consensus 38 ~lt~~q~~vL~~L~~~----~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~ 93 (189)
T 3nqo_A 38 ILTSRQYMTILSILHL----PEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSP 93 (189)
T ss_dssp SSCHHHHHHHHHHHHS----CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred cCCHHHHHHHHHHHhc----cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCC
Confidence 3677888999999763 2358999999999999999999999999999999987664
No 146
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=91.16 E-value=0.16 Score=38.74 Aligned_cols=54 Identities=11% Similarity=0.241 Sum_probs=46.4
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .++++.+|++.++++...|...|+.|.+.|.|....|.
T Consensus 30 ~l~~~~~~iL~~l~~~------~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~ 83 (139)
T 3bja_A 30 DISYVQFGVIQVLAKS------GKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNP 83 (139)
T ss_dssp TCCHHHHHHHHHHHHS------CSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHc------CCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCC
Confidence 4667888899999753 37999999999999999999999999999999876543
No 147
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=91.10 E-value=0.38 Score=37.52 Aligned_cols=53 Identities=15% Similarity=0.259 Sum_probs=44.5
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHh-----CCCHHHHHHHHHHHHhCCeeeecC
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQL-----KIPQKKIMDSIASLENEGLIYSTI 270 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-----~~~~~~v~~al~~L~~eG~IYsTi 270 (280)
+++.+..||++|.+. .+.-++.++|.+.+ +++...|-..|+.|.+.|.|-...
T Consensus 16 ~T~qR~~Il~~L~~~----~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 16 VTLPRVKILQMLDSA----EQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp CCHHHHHHHHHHHCC-----CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCHHHHHHHHHHHhC----CCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 577888999999863 21478999999998 599999999999999999997643
No 148
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=91.10 E-value=0.98 Score=35.26 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=34.3
Q ss_pred ceEEEEEecccccChhhhccCCCCCEEEEEEEEee--eC---Ce----eEEEEEEEeeCCC
Q 023576 98 GRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKS--FQ---GK----KQIVAFSVRPVTN 149 (280)
Q Consensus 98 G~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~--f~---~~----~~i~~~~ir~v~d 149 (280)
--|.|..|...++ .....++.|+.|.|.|+|+. |. ++ ..|.+..|..+..
T Consensus 49 ~~~~v~~wg~~Ae--~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~ 107 (134)
T 2vw9_A 49 CFIDARLFGRTAE--IANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDK 107 (134)
T ss_dssp EEEEEEEEHHHHH--HHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCC
T ss_pred EEEEEEEEcHHHH--HHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccC
Confidence 3588999975431 12345999999999999986 43 22 2367777777654
No 149
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=91.00 E-value=0.27 Score=37.27 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=42.9
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
.+.+..||.+|... .+++.+|++.++++...|...|..|.+.|.|...-+.
T Consensus 20 ~~~r~~IL~~L~~~-------~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g 70 (118)
T 2jsc_A 20 DPTRCRILVALLDG-------VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEG 70 (118)
T ss_dssp SHHHHHHHHHHHTT-------CCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECS
T ss_pred CHHHHHHHHHHHcC-------CCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEC
Confidence 35778899998741 3688999999999999999999999999999876544
No 150
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=90.98 E-value=0.27 Score=42.14 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=44.5
Q ss_pred HHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 220 MILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 220 ~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
.||++|.+. +.++++.||++.++++.+.+...|..|.+.|.|...-++..|..+
T Consensus 10 ~iL~~l~~~-----~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg 63 (241)
T 2xrn_A 10 SIMRALGSH-----PHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGFRLG 63 (241)
T ss_dssp HHHHHHHTC-----TTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGGGCEEEEC
T ss_pred HHHHHHHhC-----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCeEEEC
Confidence 478888652 347999999999999999999999999999999885444567653
No 151
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=90.96 E-value=0.42 Score=37.72 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=46.9
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..|-.||.+|... +.+++..+|++.++++...|...|+.|...|+|....|.
T Consensus 28 gLt~~q~~vL~~L~~~-----~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~ 82 (151)
T 4aik_A 28 ELTQTHWVTLYNINRL-----PPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSA 82 (151)
T ss_dssp CCCHHHHHHHHHHHHS-----CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCCHHHHHHHHHHHHc-----CCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCC
Confidence 4677777899988642 347888999999999999999999999999999977665
No 152
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=90.92 E-value=0.35 Score=41.96 Aligned_cols=51 Identities=20% Similarity=0.398 Sum_probs=41.5
Q ss_pred HHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCccccc
Q 023576 221 ILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKF 277 (280)
Q Consensus 221 Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~ 277 (280)
||++|.. .+.++++.||+++++++.+.+...|..|.+.|.|...-+. +|..
T Consensus 28 iL~~l~~-----~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~~-~Y~l 78 (260)
T 2o0y_A 28 LLELFDA-----AHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADG-SYSL 78 (260)
T ss_dssp HHTTCBT-----TBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTS-CEEE
T ss_pred HHHHHhh-----CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCC-eEEe
Confidence 5555543 2358999999999999999999999999999999885444 7764
No 153
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=90.90 E-value=0.27 Score=42.74 Aligned_cols=54 Identities=11% Similarity=0.325 Sum_probs=44.1
Q ss_pred HHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 220 MILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 220 ~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
.||++|.+ .+.++++.||+++++++.+.+...|..|.+.|.|...-+...|...
T Consensus 10 ~IL~~l~~-----~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG 63 (260)
T 3r4k_A 10 TLLTYFNH-----GRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSYRLG 63 (260)
T ss_dssp HHHTTCBT-----TBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEEEEC
T ss_pred HHHHHHhh-----CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEcC
Confidence 36666654 2458999999999999999999999999999999986554677643
No 154
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=90.84 E-value=1.6 Score=36.59 Aligned_cols=75 Identities=23% Similarity=0.287 Sum_probs=45.8
Q ss_pred EeeEEEEEEEEE---eee---cCCeeEEEEEc---------------CCceEEEEEecccccChhhhccCCCCCEEEEEE
Q 023576 70 ITNVTLVGLVYN---KEE---RASDVNFTLDD---------------GTGRVVCKRWASEVFDTREMEAIQDGMYVRLIG 128 (280)
Q Consensus 70 i~~V~iVG~V~~---~~~---~~t~~~~~LdD---------------gTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G 128 (280)
++.|.|+|.|.. ++. ....+.|+|-= .|--|.|+.|...++ .....|+.|+.|.|.|
T Consensus 4 ~N~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE--~v~~~L~KG~~V~VeG 81 (199)
T 3eiv_A 4 ETVITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAE--NVAESLQRGMRVIVQG 81 (199)
T ss_dssp CCEEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHHHH--HHHHHCCTTCEEEEEE
T ss_pred ccEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHH--HHHHhcCCCCEEEEEE
Confidence 467888888754 111 12355555531 234589999976432 2234699999999999
Q ss_pred EEeee--CCe-------eEEEEEEEee
Q 023576 129 NLKSF--QGK-------KQIVAFSVRP 146 (280)
Q Consensus 129 ~l~~f--~~~-------~~i~~~~ir~ 146 (280)
+|+.- .++ ..|.+..|.+
T Consensus 82 rL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 82 RLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 99964 321 3466666654
No 155
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=90.84 E-value=1.3 Score=33.49 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=50.1
Q ss_pred EeeEEEEEEEEE---eee---cCCeeEEEEE--c---------CCceEEEEEecccccChhhhccCCCCCEEEEEEEEee
Q 023576 70 ITNVTLVGLVYN---KEE---RASDVNFTLD--D---------GTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKS 132 (280)
Q Consensus 70 i~~V~iVG~V~~---~~~---~~t~~~~~Ld--D---------gTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~ 132 (280)
++.|.|+|.|.. +.. ....+.|+|- . .|--|.|..|...++ .....++.|+.|.|.|+|+.
T Consensus 5 mN~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae--~~~~~l~KG~~V~V~G~l~~ 82 (116)
T 3vdy_A 5 FNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAE--NTALYCQKGSLVGVSGRIQT 82 (116)
T ss_dssp CCCEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHH--HHHHHCCTTCEEEEEEEEEE
T ss_pred EeEEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHHHH--HHHHhCCCCCEEEEEEEEEe
Confidence 577888888854 111 2245666652 1 122499999976432 12345899999999999995
Q ss_pred --eC---Ce----eEEEEEEEeeCCCc
Q 023576 133 --FQ---GK----KQIVAFSVRPVTNF 150 (280)
Q Consensus 133 --f~---~~----~~i~~~~ir~v~d~ 150 (280)
|. |+ ..|.+..|..+...
T Consensus 83 ~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 83 RSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEC----CCEEEEEEEEEEEEECC--
T ss_pred eEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 44 22 35788888887654
No 156
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=90.74 E-value=0.19 Score=38.61 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=46.1
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
+++..+-.||.+|... .++++.+|++.++++...|..+|+.|.+.|.|-..-|
T Consensus 34 ~l~~~~~~iL~~l~~~------~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~ 86 (142)
T 2bv6_A 34 NLTYPQFLVLTILWDE------SPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERS 86 (142)
T ss_dssp TCCHHHHHHHHHHHHS------SEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEEC
T ss_pred CCCHHHHHHHHHHHHc------CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecC
Confidence 3566788899999753 3799999999999999999999999999999988765
No 157
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=90.72 E-value=0.51 Score=37.20 Aligned_cols=54 Identities=13% Similarity=0.284 Sum_probs=45.6
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHh-----CCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQL-----KIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-----~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++.+..||++|.+. +.-++.++|.+.+ +++...|-..|+.|.+.|.|-....+
T Consensus 20 ~T~qR~~Il~~L~~~-----~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~ 78 (145)
T 2fe3_A 20 ITPQRHAILEYLVNS-----MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYG 78 (145)
T ss_dssp CCHHHHHHHHHHHHC-----SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CCHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeC
Confidence 567888999999863 3478999999999 59999999999999999999765443
No 158
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=90.70 E-value=0.31 Score=45.76 Aligned_cols=69 Identities=14% Similarity=0.286 Sum_probs=46.1
Q ss_pred eEEEEEEEEEeee------c-----CCeeEEEEEcCCc-eEEEEEecccccChhhhccCCCCCEEEEEE-EEeeeCCeeE
Q 023576 72 NVTLVGLVYNKEE------R-----ASDVNFTLDDGTG-RVVCKRWASEVFDTREMEAIQDGMYVRLIG-NLKSFQGKKQ 138 (280)
Q Consensus 72 ~V~iVG~V~~~~~------~-----~t~~~~~LdDgTG-~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G-~l~~f~~~~~ 138 (280)
.|.|+|.|.++.. + .....++|.|.|| .|.|.+|.+.+..-........|..|.+.| +++.|+|+ .
T Consensus 135 ~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~kV~~f~G~-~ 213 (444)
T 4gop_C 135 QCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGGR-S 213 (444)
T ss_dssp CCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECTTCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESCEEECTTSS-E
T ss_pred ceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeCCCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeEEEeecCCe-E
Confidence 4567777777632 1 2467899999999 799999987542211011256788877765 67789885 6
Q ss_pred EEE
Q 023576 139 IVA 141 (280)
Q Consensus 139 i~~ 141 (280)
|++
T Consensus 214 ls~ 216 (444)
T 4gop_C 214 LSM 216 (444)
T ss_dssp EEC
T ss_pred Eec
Confidence 654
No 159
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=90.58 E-value=0.33 Score=44.64 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=41.5
Q ss_pred hHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecC
Q 023576 218 DQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTI 270 (280)
Q Consensus 218 ~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTi 270 (280)
++.||++|+.. ..++..+|++.++++...|...+++|.++|.|.++-
T Consensus 18 ~~~il~~l~~~------~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~~~ 64 (406)
T 1z6r_A 18 AGAVYRLIDQL------GPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQELE 64 (406)
T ss_dssp HHHHHHHHHSS------CSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHHc------CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEeec
Confidence 35699999974 368999999999999999999999999999998853
No 160
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=90.57 E-value=3.1 Score=30.92 Aligned_cols=44 Identities=7% Similarity=0.015 Sum_probs=31.5
Q ss_pred EEEEEecccccChhhhccCCCCCEEEEEEEEee--eCCe-eEEEEEEEeeC
Q 023576 100 VVCKRWASEVFDTREMEAIQDGMYVRLIGNLKS--FQGK-KQIVAFSVRPV 147 (280)
Q Consensus 100 I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~--f~~~-~~i~~~~ir~v 147 (280)
|.|+.|-..++ ...+..|+.|.|.|+|+. |+++ .-|.|..|..+
T Consensus 55 i~vv~~gk~Ae----~~~l~KG~~v~veGrL~~rs~~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGRQAE----EWQYRQGDCATVEGFLAQKSRRSLMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHHHHH----HSTTCTTCEEEEEEEEEESSSSCCCEEEEEEEEEEC
T ss_pred EEEEEEhHHhh----hhccCCCCEEEEEEEEEECccCCccEEEEEEEEEEc
Confidence 78888876542 455999999999999985 5544 33555666554
No 161
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=90.56 E-value=1.6 Score=34.93 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=47.7
Q ss_pred EeeEEEEEEEEE---ee---ecCCeeEEEEE--c-----C------CceEEEEEecccccChhhhccCCCCCEEEEEEEE
Q 023576 70 ITNVTLVGLVYN---KE---ERASDVNFTLD--D-----G------TGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNL 130 (280)
Q Consensus 70 i~~V~iVG~V~~---~~---~~~t~~~~~Ld--D-----g------TG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l 130 (280)
++.|.|+|.|.. ++ .....+.|+|- . . |--|.|..|...++ .....++.|+.|.|.|+|
T Consensus 16 ~N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae--~~~~~l~KG~~V~VeGrL 93 (153)
T 1z9f_A 16 FNKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAE--FARTYLTKGRLVLVEGEM 93 (153)
T ss_dssp CCCEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHHHH--HHHHHCCTTCEEEEEEEE
T ss_pred eeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHH--HHHhhCCCCCEEEEEEEE
Confidence 577888888854 11 12345566553 1 1 33488999975431 223459999999999999
Q ss_pred ee--eC---Ce----eEEEEEEEeeCCC
Q 023576 131 KS--FQ---GK----KQIVAFSVRPVTN 149 (280)
Q Consensus 131 ~~--f~---~~----~~i~~~~ir~v~d 149 (280)
+. |. |+ ..|.+..|..+..
T Consensus 94 ~~~~~~dkdG~~r~~~eV~a~~i~~l~~ 121 (153)
T 1z9f_A 94 RMRRWETPTGEKRVSPEVVANVVRFMDR 121 (153)
T ss_dssp EEEC-------CCCEEEEEEEEEEECC-
T ss_pred EeceEECCCCCEEEEEEEEEEEEEEccC
Confidence 97 43 22 3577788877754
No 162
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=90.55 E-value=0.37 Score=40.06 Aligned_cols=48 Identities=27% Similarity=0.441 Sum_probs=42.6
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.+.+..||.+|+. ..+++.+|++.++++...|...|..|.+.|.|-..
T Consensus 19 d~~~~~IL~~L~~-------~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 19 EDTRRKILKLLRN-------KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp SHHHHHHHHHHTT-------CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHc-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 5678889999973 25899999999999999999999999999999764
No 163
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=90.55 E-value=0.87 Score=36.07 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=42.8
Q ss_pred EeeEEEEEEEEEe---e---ecCCeeEEEEE--------------cCCceEEEEEecccccChhhhccCCCCCEEEEEEE
Q 023576 70 ITNVTLVGLVYNK---E---ERASDVNFTLD--------------DGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGN 129 (280)
Q Consensus 70 i~~V~iVG~V~~~---~---~~~t~~~~~Ld--------------DgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~ 129 (280)
++.|.|+|.|..- + .....+.|+|- |.|--|.|..|...++ .....++.|+.|.|.|+
T Consensus 5 mN~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae--~~~~~l~KG~~V~V~G~ 82 (145)
T 1qvc_A 5 VNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE--VASEYLRKGSQVYIEGQ 82 (145)
T ss_dssp EEEEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHH--HHHHHCCTTCEEEEEEE
T ss_pred eEEEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHH--HHHHhcCCCCEEEEEEE
Confidence 6889999999552 2 22357778773 1233599999976432 12345999999999999
Q ss_pred Eee
Q 023576 130 LKS 132 (280)
Q Consensus 130 l~~ 132 (280)
|+.
T Consensus 83 L~~ 85 (145)
T 1qvc_A 83 LRT 85 (145)
T ss_dssp EEE
T ss_pred EEe
Confidence 986
No 164
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=90.44 E-value=0.44 Score=37.47 Aligned_cols=58 Identities=12% Similarity=0.324 Sum_probs=41.0
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++.-|-.||.+|..... ....+++..+|++.++++...|...|+.|...|.| ...|+
T Consensus 30 gLt~~q~~vL~~l~~~~~-~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glV-r~~~~ 87 (148)
T 4fx0_A 30 GLTNTQFSTLAVISLSEG-SAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLV-RVMAG 87 (148)
T ss_dssp TCCHHHHHHHHHHHC----------CHHHHHHHHTCCHHHHHHHHHHHHHTTSB-C----
T ss_pred CCCHHHHHHHHHHHHhcC-CCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCE-EeeCC
Confidence 466777789999876531 12346999999999999999999999999999999 55554
No 165
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=90.41 E-value=0.54 Score=36.48 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=47.1
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhC----CCHHHHHHHHHHHHhCCeeeecCCCcc
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLK----IPQKKIMDSIASLENEGLIYSTIDEFH 274 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~----~~~~~v~~al~~L~~eG~IYsTiDd~h 274 (280)
+++..+-.||.+|-.. ..+++..+|++.++ ++...|...|+.|...|.|-..-|...
T Consensus 6 ~lt~~e~~vL~~L~~~-----~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r~ 66 (138)
T 2g9w_A 6 RLGDLERAVMDHLWSR-----TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDRA 66 (138)
T ss_dssp GCCHHHHHHHHHHHTC-----SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---C
T ss_pred cCCHHHHHHHHHHHhc-----CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEecCCe
Confidence 5788899999999762 24799999999996 799999999999999999988766543
No 166
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=90.31 E-value=0.24 Score=38.26 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=45.0
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
++..+-.||.+|... ..+++..+|++.++++...|..+|+.|...|.|....|.
T Consensus 33 l~~~~~~iL~~l~~~-----~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~ 86 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRL-----GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADP 86 (147)
T ss_dssp HHHHHHHHHHHHHHT-----TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCHHHHHHHHHHHHc-----CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCC
Confidence 456777899988751 247999999999999999999999999999999887654
No 167
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=90.30 E-value=0.26 Score=38.02 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=47.0
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|..+|+.|...|.|....|.
T Consensus 37 ~l~~~~~~iL~~l~~~------~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~ 90 (147)
T 1z91_A 37 NITYPQYLALLLLWEH------ETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSE 90 (147)
T ss_dssp CCCHHHHHHHHHHHHH------SEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCS
T ss_pred CCCHHHHHHHHHHHHC------CCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCC
Confidence 4667788899999753 28999999999999999999999999999999887653
No 168
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=90.13 E-value=0.17 Score=43.15 Aligned_cols=61 Identities=23% Similarity=0.388 Sum_probs=48.7
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCH--HHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHV--NELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v--~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
+++..+..+|.+|.... +.|++. .+|+++++++...|..+|+.|...|+|...-| ..+..|
T Consensus 3 ~lt~~~e~~L~~L~~l~----~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~-~~v~LT 65 (230)
T 1fx7_A 3 ELVDTTEMYLRTIYDLE----EEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD-RHLELT 65 (230)
T ss_dssp TTSSHHHHHHHHHHHHH----HHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT-SCEEEC
T ss_pred CCCHHHHHHHHHHHHHh----hcCCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC-ccEEEC
Confidence 46778888888886542 236766 99999999999999999999999999998765 344444
No 169
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=90.04 E-value=0.64 Score=39.72 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=37.3
Q ss_pred hhHHHHHHhcCCCCCCCCCcc-CHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 217 CDQMILDYLQQPSSSERERGV-HVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv-~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
+.+.|.+.|.... -....-+ +..+++++++.+...||+||..|.++|.|+..
T Consensus 14 i~~~l~~~I~~g~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 66 (236)
T 3edp_A 14 IASKIKDSINRDE-YKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK 66 (236)
T ss_dssp HHHHHHHHHHTTS-SCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCC-CCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3344445454421 1223456 79999999999999999999999999999873
No 170
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=89.89 E-value=1.3 Score=34.82 Aligned_cols=56 Identities=21% Similarity=0.285 Sum_probs=43.4
Q ss_pred eeEEEEEEEEE--eee--cCCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEEEEee
Q 023576 71 TNVTLVGLVYN--KEE--RASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKS 132 (280)
Q Consensus 71 ~~V~iVG~V~~--~~~--~~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~ 132 (280)
.+|+|-|.|.. +.. ....++|.|.|+...|.|.+--. .++.|++|.=|-|.|++..
T Consensus 29 ~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~Y~Gi------lPDlFrEGqgVVa~G~l~~ 88 (136)
T 1sr3_A 29 QRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGI------LPDLFREGQGVVVQGELEK 88 (136)
T ss_dssp SEEEEEEEECTTTCEECSSSSEEEEEEECSSCEEEEEEESC------CCTTCCTTSEEEEEEEECS
T ss_pred CEEEEeeEEeCCcEEEcCCCCEEEEEEEeCCcEEEEEECCC------CCccccCCCeEEEEEEECC
Confidence 57889999973 443 35689999999988898885432 2467999999999999863
No 171
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=89.84 E-value=1.7 Score=38.71 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=51.4
Q ss_pred EeeEEEEEEEEE---eee---cCCeeEEEEE------cC-------CceEEEEEecccccChhhhccCCCCCEEEEEEEE
Q 023576 70 ITNVTLVGLVYN---KEE---RASDVNFTLD------DG-------TGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNL 130 (280)
Q Consensus 70 i~~V~iVG~V~~---~~~---~~t~~~~~Ld------Dg-------TG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l 130 (280)
++.|.|+|.|.. +.. ....+.|+|- |. |--|.|..|...++ .... ++.|+.|.|.|+|
T Consensus 129 mN~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae--~~~~-l~KG~~V~V~GrL 205 (301)
T 1se8_A 129 MNEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAE--NMKE-LRKGDPVMIMGRL 205 (301)
T ss_dssp EEEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHH--HHTT-CCTTCEEEEEEEE
T ss_pred eeEEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHH--HHHh-cCCCCEEEEEEEE
Confidence 688999999965 221 2346666663 22 22488999976432 1234 9999999999999
Q ss_pred ee--eCCe-------eEEEEEEEeeCCC
Q 023576 131 KS--FQGK-------KQIVAFSVRPVTN 149 (280)
Q Consensus 131 ~~--f~~~-------~~i~~~~ir~v~d 149 (280)
+. |.++ ..|.+..|..+..
T Consensus 206 ~~~~y~dkdG~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 206 VNEGWTDKDGNKRNSTRVEATRVEALAR 233 (301)
T ss_dssp EEEECC------CEEEEEEEEEEEECCC
T ss_pred eeeeEECCCCcEEEEEEEEEEEEEEecc
Confidence 86 5432 3577788877765
No 172
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=89.82 E-value=0.17 Score=40.29 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=45.3
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+.++++.+|++.++++...|...|+.|...|+|....|.
T Consensus 43 glt~~q~~vL~~l~~~----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 98 (168)
T 3u2r_A 43 ELSAQQYNTLRLLRSV----HPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKP 98 (168)
T ss_dssp TCCHHHHHHHHHHHHH----TTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHhc----CCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCC
Confidence 4677888899999763 1358999999999999999999999999999999987654
No 173
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=89.76 E-value=0.37 Score=39.65 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=39.9
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCe-eee
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGL-IYS 268 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~-IYs 268 (280)
-+.+||++|++. ...++..+|+++|+++...|+.-|..|.+.|. |..
T Consensus 22 R~~~Il~~L~~~-----~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 22 RLKSIVRILERS-----KEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHC-----SSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHc-----CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 456789999753 23599999999999999999999999999998 754
No 174
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=89.73 E-value=6 Score=30.86 Aligned_cols=47 Identities=13% Similarity=0.076 Sum_probs=31.6
Q ss_pred EEEEEecccccChhhhccCCCCCEEEEEEEEeeeCC----ee-EEEEEEEeeCC
Q 023576 100 VVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQG----KK-QIVAFSVRPVT 148 (280)
Q Consensus 100 I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f~~----~~-~i~~~~ir~v~ 148 (280)
|.|+.|-..++ .....+..|+.|.|.|+|+.-.+ ++ .+.+..|..++
T Consensus 67 i~vv~wGk~AE--~~~~yl~KGs~V~VeGrL~tr~~k~G~kr~~~~a~~i~~l~ 118 (134)
T 1v1q_A 67 MPVIVSGHENQ--AITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELID 118 (134)
T ss_dssp EEEEEESTGGG--GGGTTCCTTCEEEEEEEEEEECTTTTSCEEEEEEEEEEETT
T ss_pred EEEEEEhHHHH--HHHHhcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEECc
Confidence 89999976542 12345899999999999998632 22 23445555553
No 175
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=89.61 E-value=0.68 Score=41.49 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=45.1
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCccccc
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKF 277 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~ 277 (280)
.+.+.+||++|+. ..-++.++|+++|++++..|+..|..|.+.|.+-.......|..
T Consensus 4 ~~r~~~Il~~L~~------~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~~~g~GY~l 60 (321)
T 1bia_A 4 NTVPLKLIALLAN------GEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSL 60 (321)
T ss_dssp CHHHHHHHHHHTT------SSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEEC
T ss_pred chHHHHHHHHHHc------CCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEecCCCcEE
Confidence 3467789999964 23689999999999999999999999999998854444334443
No 176
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=89.58 E-value=0.47 Score=40.97 Aligned_cols=52 Identities=10% Similarity=0.209 Sum_probs=42.2
Q ss_pred HHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 220 MILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 220 ~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
+||++|.. .+.++++.||+++++++.+.+...|..|.+.|.|... +..|..+
T Consensus 18 ~iL~~l~~-----~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~--~~~Y~Lg 69 (257)
T 2g7u_A 18 AVLLAFDA-----QRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGS--GGRWSLT 69 (257)
T ss_dssp HHHHTCSS-----SCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTEEEEC
T ss_pred HHHHHHHh-----CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC--CCEEEEc
Confidence 36666653 2358999999999999999999999999999999874 4677643
No 177
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=89.56 E-value=0.23 Score=37.40 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=47.7
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhC----CCHHHHHHHHHHHHhCCeeeecCCCc
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLK----IPQKKIMDSIASLENEGLIYSTIDEF 273 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~----~~~~~v~~al~~L~~eG~IYsTiDd~ 273 (280)
+++..+..||.+|... .+++..+|++.++ ++...|...|+.|.+.|.|...-|+.
T Consensus 7 ~lt~~~~~vL~~l~~~------~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~r 65 (123)
T 1okr_A 7 EISSAEWEVMNIIWMK------KYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNK 65 (123)
T ss_dssp CCCHHHHHHHHHHHHH------SSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETT
T ss_pred cCCHHHHHHHHHHHhC------CCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEecCC
Confidence 5788889999999752 3799999999997 88999999999999999998876654
No 178
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=89.53 E-value=0.23 Score=38.96 Aligned_cols=54 Identities=19% Similarity=0.354 Sum_probs=45.0
Q ss_pred CCCchhHHHHHHh-cCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYL-QQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i-~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+| .. ..+++..+|++.++++...|...|+.|...|.|....|.
T Consensus 44 ~l~~~~~~iL~~L~~~------~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~ 98 (160)
T 3boq_A 44 GLSLAKFDAMAQLARN------PDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSA 98 (160)
T ss_dssp SCCHHHHHHHHHHHHC------TTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC---
T ss_pred CCCHHHHHHHHHHHHc------CCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCC
Confidence 4677888899999 44 248999999999999999999999999999999987654
No 179
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=89.40 E-value=1.7 Score=32.39 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=24.4
Q ss_pred EEEEEecccccChhhhccCCCCCEEEEEEEEeee
Q 023576 100 VVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSF 133 (280)
Q Consensus 100 I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f 133 (280)
|.|+.|-..+ +....+..|+.|.|.|+|+.-
T Consensus 50 i~vv~wGk~A---E~~~~~~kGs~V~VeGrL~tr 80 (101)
T 3en2_A 50 IEALGAGKMA---SVLDRIAPGTVLECVGFLARK 80 (101)
T ss_dssp EEEEEETHHH---HHHTTSCTTCEEEEEEEEEEC
T ss_pred EEEEEEhHHH---HHHhhcCCCCEEEEEEEEEeC
Confidence 8889997644 234568899999999999953
No 180
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=89.37 E-value=0.53 Score=37.38 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=43.9
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHh-----CCCHHHHHHHHHHHHhCCeeeec
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQL-----KIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-----~~~~~~v~~al~~L~~eG~IYsT 269 (280)
+++.+..||++|.+. .+.-++.++|.+.+ +++...|-..|+.|.+.|.|-..
T Consensus 15 ~T~qR~~Il~~L~~~----~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 71 (150)
T 2w57_A 15 VTLPRLKILEVLQQP----ECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRH 71 (150)
T ss_dssp CCHHHHHHHHHHTSG----GGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 577888999999863 11468999999998 58999999999999999999764
No 181
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=89.30 E-value=0.47 Score=36.70 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=43.8
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHh-----CCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQL-----KIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-----~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
++.+..||++|.+. +.-++.++|.+.+ +++...|-..|+.|.+.|.|-....
T Consensus 10 T~qR~~Il~~l~~~-----~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 10 TRQRAAISTLLETL-----DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHHHHHC-----CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEe
Confidence 55678899999753 3478999999999 5999999999999999999976543
No 182
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=89.26 E-value=0.31 Score=37.97 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=43.8
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
+++..+-.||.+| .. .+++..+|++.++++...|...|+.|...|.|..
T Consensus 35 ~lt~~q~~iL~~l-~~------~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 35 GISAEQSHVLNML-SI------EALTVGQITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp TCCHHHHHHHHHH-HH------SCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred CCCHHHHHHHHHH-Hc------CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4667888899999 42 4899999999999999999999999999999996
No 183
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=89.14 E-value=0.87 Score=33.69 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=41.5
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHh-CCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQL-KIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
..-.||..|.. ..+++.+|++.+ +++...+...|+.|.+.|.|....|.
T Consensus 15 ~~~~IL~~L~~-------~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~ 64 (107)
T 2hzt_A 15 WKXVILXHLTH-------GKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYN 64 (107)
T ss_dssp THHHHHHHHTT-------CCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred cHHHHHHHHHh-------CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 45568877752 258999999999 99999999999999999999887664
No 184
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=89.09 E-value=0.73 Score=38.92 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=32.4
Q ss_pred CCCcc-CHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 233 RERGV-HVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 233 ~e~Gv-~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
...=+ +..+++++|+++..-||+||..|..+|.|..
T Consensus 27 pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~ 63 (239)
T 1hw1_A 27 PGTILPAERELSELIGVTRTTLREVLQRLARDGWLTI 63 (239)
T ss_dssp TTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE
Confidence 34567 6899999999999999999999999999975
No 185
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=89.09 E-value=0.21 Score=37.08 Aligned_cols=55 Identities=7% Similarity=0.180 Sum_probs=46.4
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhC----CCHHHHHHHHHHHHhCCeeeecCCCc
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLK----IPQKKIMDSIASLENEGLIYSTIDEF 273 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~----~~~~~v~~al~~L~~eG~IYsTiDd~ 273 (280)
+++..+..||++|.+. .+++..+|++.++ ++...|...|+.|++.|.|-..-|..
T Consensus 32 ~LT~~e~~VL~~L~~~------~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~gR 90 (99)
T 2k4b_A 32 NVSNAELIVMRVIWSL------GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEGR 90 (99)
T ss_dssp CCCCSCSHHHHHHHHH------SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEETT
T ss_pred CCCHHHHHHHHHHHhC------CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeCCC
Confidence 5778888999999863 3799999999996 57899999999999999998765543
No 186
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=88.98 E-value=0.71 Score=36.90 Aligned_cols=47 Identities=19% Similarity=0.153 Sum_probs=41.3
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
.+.+++||++|+ .+ .+++.+|++.+++|-.++.-+|-.|..||.|.+
T Consensus 10 ~erk~~ILE~Lk-~G------~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~ 56 (165)
T 2vxz_A 10 LVRLRDILALLA-DG------CKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTR 56 (165)
T ss_dssp HHHHHHHHHHHT-TC------CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEE
T ss_pred HHHHHHHHHHHH-hC------CccHHHHHHHhCCcHHHHHHHHHHHHhcCceEE
Confidence 346788999999 32 579999999999999999999999999999865
No 187
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=88.97 E-value=0.71 Score=36.84 Aligned_cols=72 Identities=19% Similarity=0.312 Sum_probs=46.2
Q ss_pred CCeEECCEEEeeEEEEEEEEEeeec----CCeeEEE--EEcCC---c-----eEEEEEecccccChhhhccCCCCCEEEE
Q 023576 61 SNFMINGLEITNVTLVGLVYNKEER----ASDVNFT--LDDGT---G-----RVVCKRWASEVFDTREMEAIQDGMYVRL 126 (280)
Q Consensus 61 ~~~~i~g~~i~~V~iVG~V~~~~~~----~t~~~~~--LdDgT---G-----~I~~~~w~~~~~~~~~~~~~~~G~yVrV 126 (280)
..+...-+.++.|.|+|+|.+...+ ..-..|+ ++... | -+.++.|- ......-...++.|+.|.|
T Consensus 35 ~~~~~h~r~vN~VvLmGRvtdpq~ry~~~~~Va~FtLAV~~~~~r~ge~~tdf~~V~vfG-g~lAE~i~~ylkkG~rVlV 113 (148)
T 3stb_C 35 GEVAAHWRCVNHCVMLGVVQNIQEGFVFEDKVLQFTLITDFEGPSPGDPDKDFHTVRVFD-SDYSSRVKEQLRDGEWFLV 113 (148)
T ss_dssp ---CCCCSCSEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCCTTSCSEEEEEEEECS-HHHHHHHHHHCCTTCEEEE
T ss_pred hhhhhhheecceEEEEEEecCccccccCCCcEEEEEEEEecCCCCCCCCccceEEEEEEC-ChHHHHHHHHhcCCCEEEE
Confidence 3455556889999999999877654 1233444 43321 2 38888886 2111123467999999999
Q ss_pred EEEEeee
Q 023576 127 IGNLKSF 133 (280)
Q Consensus 127 ~G~l~~f 133 (280)
.|+|+.-
T Consensus 114 eGRLrmn 120 (148)
T 3stb_C 114 TGRLRMV 120 (148)
T ss_dssp EEEEEEE
T ss_pred EEEEEcc
Confidence 9999974
No 188
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=88.95 E-value=0.62 Score=40.11 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=31.5
Q ss_pred Ccc-CHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 235 RGV-HVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 235 ~Gv-~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
.=+ +..+++++++.+...||+||..|.++|.|+.
T Consensus 34 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 68 (248)
T 3f8m_A 34 DPFPAEREIAEQFEVARETVRQALRELLIDGRVER 68 (248)
T ss_dssp CBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 345 8899999999999999999999999999986
No 189
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=88.95 E-value=0.42 Score=39.93 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=47.3
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|... .+++..+|++.++++...|...|+.|...|+|....|.
T Consensus 45 gLt~~q~~iL~~L~~~------~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~ 98 (207)
T 2fxa_A 45 DLNINEHHILWIAYQL------NGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRL 98 (207)
T ss_dssp TCCHHHHHHHHHHHHH------TSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC-
T ss_pred CCCHHHHHHHHHHHHC------CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 4677888899999753 37999999999999999999999999999999988764
No 190
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*
Probab=88.78 E-value=3.7 Score=34.18 Aligned_cols=55 Identities=25% Similarity=0.274 Sum_probs=35.5
Q ss_pred EeeecCCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEE-EEeeeCCeeEEE
Q 023576 81 NKEERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIG-NLKSFQGKKQIV 140 (280)
Q Consensus 81 ~~~~~~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G-~l~~f~~~~~i~ 140 (280)
.......++.|.|.|.||.++|...-.-. .-..++||-+|++. .|+...++++|.
T Consensus 133 KK~v~~~~~~YeI~DnTG~MeVvv~G~~~-----~i~CEeGDKLrL~cFeL~~~~~~~qL~ 188 (208)
T 3rn5_A 133 KVTEKKKNILFDLSDNTGKMEVLGVRNED-----TMKCKEGDKVRLTFFTLSKNGEKLQLT 188 (208)
T ss_dssp EEEECSSEEEEEEEETTEEEEEEEECSTG-----GGSCCTTCEEEEEEEEEEECSSSEEEE
T ss_pred EEEeccceEEEEEecCCCcEEEEEeccCc-----ccccCCCCeeEEEEEEEeccCCeeeEE
Confidence 34455678999999999999999764421 23467887665543 334444555543
No 191
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=88.65 E-value=0.87 Score=34.75 Aligned_cols=50 Identities=16% Similarity=0.254 Sum_probs=41.5
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+.+..||.+|.+ .++++.+|++.++++...|...|..|.+.|.|-..-+.
T Consensus 46 ~~rl~IL~~L~~-------~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~g 95 (122)
T 1r1t_A 46 PNRLRLLSLLAR-------SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQG 95 (122)
T ss_dssp HHHHHHHHHHTT-------CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHHc-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 456678888753 25799999999999999999999999999999765443
No 192
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=88.63 E-value=0.8 Score=36.06 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=40.7
Q ss_pred hHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 218 DQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 218 ~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
--.+|-+|.... .+.-++.++|+++++++..-|+++|..|...|.|-++-.
T Consensus 13 Al~~L~~La~~~---~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG 63 (143)
T 3t8r_A 13 GLTLMISLAKKE---GQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 63 (143)
T ss_dssp HHHHHHHHHTTT---TSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred HHHHHHHHHhCC---CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCC
Confidence 345666666531 233689999999999999999999999999999988643
No 193
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=88.57 E-value=0.42 Score=44.38 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=41.2
Q ss_pred hHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 218 DQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 218 ~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
++.||++|+.. ..++..+|++.++++...|...+++|.++|.|.++
T Consensus 41 ~~~il~~l~~~------~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 41 AGRVYKLIDQK------GPISRIDLSKESELAPASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHH------CSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc------CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 35699999874 36899999999999999999999999999999875
No 194
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=88.56 E-value=0.55 Score=37.29 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=43.2
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHh-----CCCHHHHHHHHHHHHhCCeeeec
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQL-----KIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-----~~~~~~v~~al~~L~~eG~IYsT 269 (280)
+++.+..||++|.+. +.-++.++|.+.+ +++...|-..|+.|.+.|.|-..
T Consensus 25 ~T~qR~~IL~~l~~~-----~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 25 NSKQREEVVSVLYRS-----GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp CHHHHHHHHHHHHHC-----SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEE
Confidence 466788899999863 3478999999998 59999999999999999999654
No 195
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=88.55 E-value=0.54 Score=40.84 Aligned_cols=51 Identities=6% Similarity=0.198 Sum_probs=42.0
Q ss_pred HHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCccccc
Q 023576 220 MILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKF 277 (280)
Q Consensus 220 ~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~ 277 (280)
.||++|.. ...++++.||+++++++.+.+...|..|.+.|.|... +..|..
T Consensus 25 ~iL~~l~~-----~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~--~~~Y~L 75 (265)
T 2ia2_A 25 AVIRCFDH-----RNQRRTLSDVARATDLTRATARRFLLTLVELGYVATD--GSAFWL 75 (265)
T ss_dssp HHHHTCCS-----SCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEES--SSEEEE
T ss_pred HHHHHHHh-----CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec--CCEEEE
Confidence 36666653 2358999999999999999999999999999999884 467764
No 196
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=88.55 E-value=0.73 Score=32.97 Aligned_cols=46 Identities=13% Similarity=0.237 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecC
Q 023576 219 QMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTI 270 (280)
Q Consensus 219 ~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTi 270 (280)
-.|..+|.+. ...++.+|++..+++.+++.-||-.|..|+.|.---
T Consensus 11 G~VW~~L~~~------~~~s~~el~k~t~l~d~el~lAIGWLaREdKI~~~~ 56 (82)
T 2l02_A 11 GKVWHALNEA------DGISIPELARKVNLSVESTALAVGWLARENKVVIER 56 (82)
T ss_dssp HHHHHHHHHC------CSBCHHHHHHHHTCCHHHHHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHHhcc------CCCCHHHHHHHhCCCHHHHHHHHHHHhccCceeEEe
Confidence 3688898863 278999999999999999999999999999987643
No 197
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=88.50 E-value=0.16 Score=41.11 Aligned_cols=57 Identities=28% Similarity=0.310 Sum_probs=47.6
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++..+-.||.+|...+ ...|+++.+|++.++++...|...|+.|...|+|....|.
T Consensus 66 glt~~~~~iL~~L~~~~---~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~ 122 (181)
T 2fbk_A 66 GLNAAGWDLLLTLYRSA---PPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDE 122 (181)
T ss_dssp TCCHHHHHHHHHHHHHC---CSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC--
T ss_pred CCCHHHHHHHHHHHHcC---CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCC
Confidence 57778889999998642 2247999999999999999999999999999999887653
No 198
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=88.44 E-value=1.2 Score=30.12 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=35.3
Q ss_pred CCCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 212 DGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 212 ~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
..|++.+.+|+.++. .|.+..+|++.++++...|+..+..+.
T Consensus 10 ~~L~~~e~~il~~~~--------~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 10 PLLTKREREVFELLV--------QDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCCCHHHHHHHHHHT--------TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--------cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 358889999999873 378999999999999999988887654
No 199
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=88.43 E-value=0.61 Score=39.89 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=39.5
Q ss_pred eEEEEEEEEEeee---------cCCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEE
Q 023576 72 NVTLVGLVYNKEE---------RASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIG 128 (280)
Q Consensus 72 ~V~iVG~V~~~~~---------~~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G 128 (280)
.++|.++|.++.+ ....+.+.|-|.+|.|.|..|.+... ...+.|++|+.+.+.+
T Consensus 20 ~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G~I~at~~~~~~~--~~~~~l~~G~vy~i~~ 83 (246)
T 1jmc_A 20 KWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVD--KFFPLIEVNKVYYFSK 83 (246)
T ss_dssp CCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHHHHH--HHGGGCCTTCEEEEEC
T ss_pred ceEEEEEEEEecccceeeCCCCCceEEEEEEECCCCeEEEEEChHHHH--HhhhhcccCCEEEECC
Confidence 4566777765421 12457889999999999999976431 2346799999998876
No 200
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=88.34 E-value=0.48 Score=37.13 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=43.1
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHh-----CCCHHHHHHHHHHHHhCCeeeec
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQL-----KIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-----~~~~~~v~~al~~L~~eG~IYsT 269 (280)
+++.+..||++|.+. ..-++.++|.+.+ +++...|-..|+.|.+.|.|-..
T Consensus 12 ~T~qR~~Il~~L~~~-----~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 67 (139)
T 3mwm_A 12 ATRQRAAVSAALQEV-----EEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVL 67 (139)
T ss_dssp HHHHHHHHHHHHTTC-----SSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred cCHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 356778899999874 2478999999988 48999999999999999998654
No 201
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=88.30 E-value=1.1 Score=36.45 Aligned_cols=61 Identities=30% Similarity=0.412 Sum_probs=40.3
Q ss_pred EeeEEEEEEEEEe---e---ecCCeeEEEEE------c---------CCceEEEEEecccccChhhhccCCCCCEEEEEE
Q 023576 70 ITNVTLVGLVYNK---E---ERASDVNFTLD------D---------GTGRVVCKRWASEVFDTREMEAIQDGMYVRLIG 128 (280)
Q Consensus 70 i~~V~iVG~V~~~---~---~~~t~~~~~Ld------D---------gTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G 128 (280)
++.|.|+|.|..- + .....+.|+|- | .|--|.|..|...++ .....|+.|+.|.|.|
T Consensus 4 ~N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae--~~~~~l~KG~~V~VeG 81 (168)
T 3afp_A 4 DTTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAE--NVAESLTRGARVIVTG 81 (168)
T ss_dssp CCEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHH--HHHHHCCTTCEEEEEE
T ss_pred cCEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHH--HHHHhCCCCCEEEEEE
Confidence 4678888888541 1 12235566664 1 233599999976432 2235699999999999
Q ss_pred EEee
Q 023576 129 NLKS 132 (280)
Q Consensus 129 ~l~~ 132 (280)
+|+.
T Consensus 82 rL~~ 85 (168)
T 3afp_A 82 RLKQ 85 (168)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9986
No 202
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=88.23 E-value=0.84 Score=35.96 Aligned_cols=50 Identities=12% Similarity=0.188 Sum_probs=42.1
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCc
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEF 273 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~ 273 (280)
....||..|.. ..+++.+|++.++++...+...|..|.+.|.|-...+.+
T Consensus 25 w~l~IL~~L~~-------g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~ 74 (146)
T 2f2e_A 25 WSMLIVRDAFE-------GLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAES 74 (146)
T ss_dssp SHHHHHHHHHT-------TCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred hHHHHHHHHHh-------CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 55567777752 257999999999999999999999999999999877643
No 203
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=88.20 E-value=2.8 Score=30.80 Aligned_cols=66 Identities=23% Similarity=0.225 Sum_probs=46.8
Q ss_pred eeEEEEEEEEE--eee--cCCeeEEEEEcC---CceEEEEEecccccChhhhccCCCCCEEEEEEEEeeeCCeeEEEEEE
Q 023576 71 TNVTLVGLVYN--KEE--RASDVNFTLDDG---TGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFS 143 (280)
Q Consensus 71 ~~V~iVG~V~~--~~~--~~t~~~~~LdDg---TG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f~~~~~i~~~~ 143 (280)
.+++|-|.|.. +.. ....++|.|.|+ ...|.|.+--. .++.|++|.-|-+.|++..- .-.+.|..
T Consensus 9 ~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~~~v~V~Y~Gi------lPDlFrEGqgVV~~G~l~~~--~g~F~A~e 80 (94)
T 2kct_A 9 HTVRLFGTVAADGLTMLDGAPGVRFRLEDKDNTSKTVWVLYKGA------VPDTFKPGVEVIIEGGLAPG--EDTFKART 80 (94)
T ss_dssp CCEEEEEEECSTTCEECTTSSEEEEEEECSSCTTCEEEEEEESC------CCTTCCTTCEEEEEEEECTT--CSEEEEEE
T ss_pred CeEEEeeEEeCCeEEecCCCCEEEEEEEcCCCCCcEEEEEECCC------CCccccCCCeEEEEEEEeCC--CCEEEEeE
Confidence 57888899864 433 357899999998 67888885432 24679999999999998631 22455555
Q ss_pred E
Q 023576 144 V 144 (280)
Q Consensus 144 i 144 (280)
|
T Consensus 81 v 81 (94)
T 2kct_A 81 L 81 (94)
T ss_dssp E
T ss_pred E
Confidence 4
No 204
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=88.17 E-value=0.49 Score=36.55 Aligned_cols=43 Identities=9% Similarity=0.166 Sum_probs=36.2
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 235 RGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 235 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
.++++.+|++.++++...|..+|..|...|.|...-+ -.|..|
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~-~~~~LT 63 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKY-RGLVLT 63 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT-TEEEEC
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeC-ceEEEc
Confidence 3789999999999999999999999999999987533 344444
No 205
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=88.13 E-value=0.5 Score=35.62 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=48.3
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhC----CCHHHHHHHHHHHHhCCeeeecCCCcc
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLK----IPQKKIMDSIASLENEGLIYSTIDEFH 274 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~----~~~~~v~~al~~L~~eG~IYsTiDd~h 274 (280)
+++..+-.||.+|-+. .+++..+|++.++ ++...|...|+.|...|.|...-|...
T Consensus 7 ~Lt~~q~~vL~~L~~~------~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r~ 66 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDK------KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSENI 66 (126)
T ss_dssp CCCHHHHHHHHHHHHS------SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHhc------CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeCCCe
Confidence 5788999999999863 3799999999995 589999999999999999988766543
No 206
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=88.05 E-value=1.1 Score=31.63 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=40.3
Q ss_pred HHHHHHhcCCCCCCCCCccCHHHHHHHhCC-CHHHHHHHHHHHHhCCeeeecCC
Q 023576 219 QMILDYLQQPSSSERERGVHVNELSEQLKI-PQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 219 ~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~-~~~~v~~al~~L~~eG~IYsTiD 271 (280)
-.|..+|.+. ...++.+|.+..++ +.+++.-||-.|..|+.|..--.
T Consensus 13 G~VW~~L~~~------~~~s~~el~k~t~l~~d~el~lAiGWLaREdKI~~~~~ 60 (77)
T 2l01_A 13 GQIWEALNGT------EGLTQKQIKKATKLKADKDFFLGLGWLLREDKVVTSEV 60 (77)
T ss_dssp HHHHHHHTTS------SCEEHHHHHHHHTCSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHhcC------CCCCHHHHHHHHCCCCHHHHHHHHHHHhhcCceEEEee
Confidence 4689999863 37899999999999 99999999999999998876433
No 207
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=87.92 E-value=0.8 Score=40.04 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=32.0
Q ss_pred Ccc-CHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 235 RGV-HVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 235 ~Gv-~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.-+ +..+++++++.+...||+||..|.++|.|+.-
T Consensus 51 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 86 (272)
T 3eet_A 51 TRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGR 86 (272)
T ss_dssp SBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 456 79999999999999999999999999999863
No 208
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=87.90 E-value=0.54 Score=33.90 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=35.7
Q ss_pred HHHHhcCCCCCCCCCccCHHHHHHHhCCCHHH-HHHHHHHHHhCCeee
Q 023576 221 ILDYLQQPSSSERERGVHVNELSEQLKIPQKK-IMDSIASLENEGLIY 267 (280)
Q Consensus 221 Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~-v~~al~~L~~eG~IY 267 (280)
+|.+|... +.++++.+|++.++++... |...|+.|.+.|+|.
T Consensus 20 ~L~~l~~~-----~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 20 TLLEFEKK-----GYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHHHHHHT-----TCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHHHhc-----CCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 45555442 2379999999999999999 999999999999998
No 209
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=87.89 E-value=1 Score=32.49 Aligned_cols=43 Identities=26% Similarity=0.426 Sum_probs=36.6
Q ss_pred CCCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHh
Q 023576 212 DGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLEN 262 (280)
Q Consensus 212 ~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~ 262 (280)
..|++-+++||.++. +|.+..+|++.|++++..|+.-+..+..
T Consensus 28 ~~Lt~rE~~Vl~l~~--------~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 28 DVLTPRECLILQEVE--------KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp -CCCHHHHHHHHHHH--------TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468999999999986 3899999999999999999988877653
No 210
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=87.83 E-value=2 Score=38.20 Aligned_cols=78 Identities=14% Similarity=0.197 Sum_probs=47.8
Q ss_pred EeeEEEEEEEEEe---e---ecCCeeEEEEE------cCCc-------eEEEEEecccccChhhhcc-CCCCCEEEEEEE
Q 023576 70 ITNVTLVGLVYNK---E---ERASDVNFTLD------DGTG-------RVVCKRWASEVFDTREMEA-IQDGMYVRLIGN 129 (280)
Q Consensus 70 i~~V~iVG~V~~~---~---~~~t~~~~~Ld------DgTG-------~I~~~~w~~~~~~~~~~~~-~~~G~yVrV~G~ 129 (280)
++.|.|+|.|..- . .....+.|+|- |.+| -|.|..|...++ ..... ++.|+.|.|.|+
T Consensus 5 mN~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae--~~~~~~l~KG~~V~VeG~ 82 (301)
T 1se8_A 5 MNHVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAE--WQAERNLKGGDAVVVEGT 82 (301)
T ss_dssp EEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHH--HHHHTCCCTTCEEEEEEE
T ss_pred eeEEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHH--HHHhhCCCCCCEEEEEEE
Confidence 6789999998542 2 12345666662 1123 488888965431 12345 899999999999
Q ss_pred Eee--eCCe-------eEEEEEEEeeCCC
Q 023576 130 LKS--FQGK-------KQIVAFSVRPVTN 149 (280)
Q Consensus 130 l~~--f~~~-------~~i~~~~ir~v~d 149 (280)
|+. |.++ ..|.+..|..+..
T Consensus 83 L~~r~~~dkdG~~r~~~ev~a~~i~~l~~ 111 (301)
T 1se8_A 83 LEYRQWEAPEGGKRSAVNVKALRMEQLGT 111 (301)
T ss_dssp EEEEEEC-----CEEEEEEEEEEEEECSS
T ss_pred EEeeeEECCCCCEEEEEEEEEeEEEEeec
Confidence 994 6532 2366777776654
No 211
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=87.80 E-value=2.5 Score=33.22 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=43.0
Q ss_pred eeEEEEEEEEE--eee--cCCeeEEEEEc-CCceEEEEEecccccChhhhccCCCCCEEEEEEEEee
Q 023576 71 TNVTLVGLVYN--KEE--RASDVNFTLDD-GTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKS 132 (280)
Q Consensus 71 ~~V~iVG~V~~--~~~--~~t~~~~~LdD-gTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~ 132 (280)
.+|+|-|.|.. +.. ....++|.|.| +...|.|.+--. .++.|++|.-|-|.|++..
T Consensus 33 ~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~v~V~Y~Gi------lPDlFrEGqgVVa~G~l~~ 93 (136)
T 1j6q_A 33 QRIRVGGMVTVGSMVRDPNSLHVQFAVHDSLGGEILVTYDDL------LPDLFREGQGIVAQGVLGE 93 (136)
T ss_dssp CEEEEEEEECTTCCEECTTSSCEEEEEECTTCCCEEEEECSC------CTTSCCSSSEEEEEEEECS
T ss_pred CEEEEeEEEeCCcEEecCCCCEEEEEEEcCCCCEEEEEECCC------CCccccCCCeEEEEEEECC
Confidence 57889999963 443 35689999999 777898875432 2467999999999999863
No 212
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=87.75 E-value=1.3 Score=32.64 Aligned_cols=61 Identities=11% Similarity=0.223 Sum_probs=48.2
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCc
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEF 273 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~ 273 (280)
+++..+=.||..|.+.....++..++..+|++++.++...+...|+.|...|+|=.+.++|
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~~~~D 73 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEAD 73 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTT
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEeecCCC
Confidence 5777777788877654222234458999999999999999999999999999998776643
No 213
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=87.73 E-value=0.69 Score=34.87 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=43.7
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
.+.+..||.+|.. ..+++.+|++.++++...|...|..|.+.|.|-..-+.
T Consensus 17 ~~~R~~Il~~L~~-------~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 17 DPTRRAVLGRLSR-------GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQG 67 (118)
T ss_dssp SHHHHHHHHHHHT-------CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CHHHHHHHHHHHh-------CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecC
Confidence 4577889999973 25799999999999999999999999999999776543
No 214
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=87.68 E-value=0.69 Score=41.93 Aligned_cols=50 Identities=24% Similarity=0.419 Sum_probs=43.4
Q ss_pred CCchhHHHHH-----HhcCCCCCCCCCccCHHHHHHHh--CCCHHHHHHHHHHHHhCCeeeec
Q 023576 214 LKDCDQMILD-----YLQQPSSSERERGVHVNELSEQL--KIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 214 l~~~~~~Vl~-----~i~~~~~~~~e~Gv~v~~I~~~l--~~~~~~v~~al~~L~~eG~IYsT 269 (280)
+++=+++||+ +|+. ..-|.+.+|++++ +.++..||..|..|.++|.|..+
T Consensus 15 l~eR~~~IL~~i~~~yl~~------~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~r~ 71 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIEN------KKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQP 71 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHH------CSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHHHHHHHHHc------CCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEc
Confidence 4567888999 6665 2468999999999 89999999999999999999876
No 215
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=87.57 E-value=1.1 Score=31.45 Aligned_cols=42 Identities=14% Similarity=0.299 Sum_probs=35.3
Q ss_pred CCCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 212 DGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 212 ~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
..|++.+++|+.++. +|.+..+|++.+++++..|+..+..+.
T Consensus 20 ~~Lt~~e~~vl~l~~--------~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 20 NQLTPRERDILKLIA--------QGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp GGSCHHHHHHHHHHT--------TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 358889999999862 389999999999999999988776654
No 216
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=87.53 E-value=1.8 Score=36.89 Aligned_cols=66 Identities=20% Similarity=0.353 Sum_probs=45.2
Q ss_pred eeEEEEEEEEEeee------c-----CCeeEEEEEcCCc-eEEEEEecccccChhhhccCCCCCEEEEEE-EEeeeCCee
Q 023576 71 TNVTLVGLVYNKEE------R-----ASDVNFTLDDGTG-RVVCKRWASEVFDTREMEAIQDGMYVRLIG-NLKSFQGKK 137 (280)
Q Consensus 71 ~~V~iVG~V~~~~~------~-----~t~~~~~LdDgTG-~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G-~l~~f~~~~ 137 (280)
..|.|+|.|.++.. + .....+.|.|.|| .|.|.+|.+.+. . .....|..|.+.| +++.|++ +
T Consensus 139 ~~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~sg~~i~~tLWg~~a~---~-~~~~~~~vv~i~~~~v~~f~g-~ 213 (246)
T 1jmc_A 139 SLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGEDAD---K-FDGSRQPVLAIKGARVSDFGG-R 213 (246)
T ss_dssp CEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCCEEEEEEEHHHHH---H-CCCTTCCEEEEEEEEEECTTS-S
T ss_pred CceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCCCCEEEEEEEchhhh---h-cccCCCCEEEEEEEEEEecCC-e
Confidence 35778888877642 1 1467889999999 599999987542 1 1246677777665 5667854 6
Q ss_pred EEEE
Q 023576 138 QIVA 141 (280)
Q Consensus 138 ~i~~ 141 (280)
.|++
T Consensus 214 ~ls~ 217 (246)
T 1jmc_A 214 SLSV 217 (246)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7765
No 217
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=87.35 E-value=0.69 Score=28.21 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=30.5
Q ss_pred hHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 023576 218 DQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEG 264 (280)
Q Consensus 218 ~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG 264 (280)
+..|+.++. .|++..+|++.|+++...|...+......|
T Consensus 11 ~~~i~~~~~--------~g~s~~~IA~~lgis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 11 RAQLDVMKL--------LNVSLHEMSRKISRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp HHHHHHHHH--------TTCCHHHHHHHHTCCHHHHHHHHHCSTTTT
T ss_pred HHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHhhHHhcC
Confidence 345666553 388999999999999999999887766555
No 218
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=87.27 E-value=1 Score=38.46 Aligned_cols=52 Identities=19% Similarity=0.366 Sum_probs=38.1
Q ss_pred hhHHHHHHhcCCCCCCCCCcc-CHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 217 CDQMILDYLQQPSSSERERGV-HVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv-~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
+.+.|.+.|.... -....=+ +..+++++++.+...||+||..|.++|.|+..
T Consensus 10 i~~~l~~~I~~g~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~ 62 (239)
T 3bwg_A 10 IATEIETYIEEHQ-LQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQV 62 (239)
T ss_dssp HHHHHHHHHHHTT-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCC-CCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe
Confidence 4444555444321 1123356 79999999999999999999999999999863
No 219
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=87.19 E-value=3.1 Score=36.12 Aligned_cols=78 Identities=18% Similarity=0.301 Sum_probs=52.6
Q ss_pred EEeeEEEEEEEEEe---e---ecCCeeEEEEE----------cCCceEEEEEecccccChhhhccCCCCCEEEEEEEEee
Q 023576 69 EITNVTLVGLVYNK---E---ERASDVNFTLD----------DGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKS 132 (280)
Q Consensus 69 ~i~~V~iVG~V~~~---~---~~~t~~~~~Ld----------DgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~ 132 (280)
.++.|.|+|.|..- . .....+.|+|- |.|--|.|..|...+. ... .++.|+.|.|.|+|+.
T Consensus 127 ~~N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae--~~~-~l~KG~~V~V~G~l~~ 203 (264)
T 2fxq_A 127 ALNQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAE--WAS-ELRKGDGLLVIGRLVN 203 (264)
T ss_dssp CCEEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHHHH--HHT-TCCTTCEEEEEEEEEE
T ss_pred ceEEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHH--Hhh-hcCCCCEEEEEEEEEe
Confidence 36899999999652 2 12346677763 2344699999975431 224 8999999999999986
Q ss_pred --eC---Ce----eEEEEEEEeeCCC
Q 023576 133 --FQ---GK----KQIVAFSVRPVTN 149 (280)
Q Consensus 133 --f~---~~----~~i~~~~ir~v~d 149 (280)
|. |+ ..|.+..|..+..
T Consensus 204 ~~~~~~dG~~~~~~ev~a~~i~~l~~ 229 (264)
T 2fxq_A 204 DSWTSSSGERRFQTRVEALRLERPTR 229 (264)
T ss_dssp EEEECTTSCEEEEEEEEEEEEECCCC
T ss_pred eEEECCCCCEEEEEEEEEEEEEECcc
Confidence 43 33 2477778877765
No 220
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=87.17 E-value=1 Score=34.93 Aligned_cols=62 Identities=21% Similarity=0.149 Sum_probs=42.0
Q ss_pred EEEeeEEEEEEEEEe------eecCCeeEEEEE------c---------CCceEEEEEecccccChhhhccCCCCCEEEE
Q 023576 68 LEITNVTLVGLVYNK------EERASDVNFTLD------D---------GTGRVVCKRWASEVFDTREMEAIQDGMYVRL 126 (280)
Q Consensus 68 ~~i~~V~iVG~V~~~------~~~~t~~~~~Ld------D---------gTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV 126 (280)
..|+.|.|+|.|..- ... ..+.|+|- | .|--+.|..|...++ .....++.|+.|.|
T Consensus 13 ~~~N~V~LiGrL~~dPelr~t~~G-~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae--~~~~~l~KG~~V~V 89 (128)
T 4dam_A 13 MNEIMICAVGNVATTPVFRDLANG-PSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLAT--NASGSLAVGDPVVV 89 (128)
T ss_dssp BCCCEEEEEEEECSCCEEEEETTE-EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHH--HHHHHCCTTCEEEE
T ss_pred cceeEEEEEEEECCCCEEEEcCCC-CEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHH--HHHHhcCCCCEEEE
Confidence 567889999998541 123 56667662 2 223488888865432 22356999999999
Q ss_pred EEEEee
Q 023576 127 IGNLKS 132 (280)
Q Consensus 127 ~G~l~~ 132 (280)
.|+|+.
T Consensus 90 eGrL~~ 95 (128)
T 4dam_A 90 QGRLKV 95 (128)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999985
No 221
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=87.05 E-value=0.49 Score=34.74 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=31.9
Q ss_pred Ccc-CHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 235 RGV-HVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 235 ~Gv-~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.-+ ++.+|++.|+++...|+++|..|.++|.|...
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 345 89999999999999999999999999999864
No 222
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=86.98 E-value=1 Score=38.55 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=31.8
Q ss_pred Ccc-CHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 235 RGV-HVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 235 ~Gv-~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.=+ +..+++++++.+...||+||..|.++|.|+..
T Consensus 32 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 67 (243)
T 2wv0_A 32 MPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL 67 (243)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 345 78999999999999999999999999999863
No 223
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=86.56 E-value=0.47 Score=37.25 Aligned_cols=59 Identities=15% Similarity=0.275 Sum_probs=42.3
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee--cCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS--TIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs--TiDd 272 (280)
++++-+-.|+=.|.... .....+.+.++|++++++++.+|...|+.|++.|.|-- ..|+
T Consensus 29 gLs~~E~~lLl~L~~~~-~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~ 89 (135)
T 2v79_A 29 GLNETELILLLKIKMHL-EKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQ 89 (135)
T ss_dssp TCCHHHHHHHHHHHHHH-TTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECT
T ss_pred CCCHHHHHHHHHHHHHH-hcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecC
Confidence 45555544433332210 12346899999999999999999999999999999877 4454
No 224
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=86.24 E-value=0.43 Score=34.51 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=38.8
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCee
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLI 266 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~I 266 (280)
++.-+-.||.+|-... .....++..+|++.++++...|...|+.|...|+|
T Consensus 10 l~~~~~~iL~~l~~~~--~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 10 FKEKALEILMTIYYES--LGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp SCHHHHHHHHHHHHHH--HTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred CchhHHHHHHHHHHcc--CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 4555556666653311 11123999999999999999999999999999999
No 225
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=86.21 E-value=1.6 Score=33.44 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=42.6
Q ss_pred EEeeEEEEEEEEE---ee---ecCCeeEEEEE------cC-Cc-------eEEEEEec-ccccChhhhccCCCCCEEEEE
Q 023576 69 EITNVTLVGLVYN---KE---ERASDVNFTLD------DG-TG-------RVVCKRWA-SEVFDTREMEAIQDGMYVRLI 127 (280)
Q Consensus 69 ~i~~V~iVG~V~~---~~---~~~t~~~~~Ld------Dg-TG-------~I~~~~w~-~~~~~~~~~~~~~~G~yVrV~ 127 (280)
-++.|.|+|.|.. +. .....+.|+|- |. +| -+.|..|. ..++ .....++.|+.|.|.
T Consensus 5 ~~N~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae--~~~~~l~KG~~V~V~ 82 (124)
T 3ulp_A 5 SLNKIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVD--LIDKYLRKGRRVYVQ 82 (124)
T ss_dssp CEEEEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHH--HHHHHCCTTCEEEEE
T ss_pred cceEEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHH--HHHhhcCCCCEEEEE
Confidence 4788999999864 22 12245666652 21 23 48899997 4331 123459999999999
Q ss_pred EEEe--eeCC
Q 023576 128 GNLK--SFQG 135 (280)
Q Consensus 128 G~l~--~f~~ 135 (280)
|+|+ .|.+
T Consensus 83 G~L~~~~~~d 92 (124)
T 3ulp_A 83 GSLHTRKWHT 92 (124)
T ss_dssp EEEEEEEECC
T ss_pred EEEEeEEEeC
Confidence 9998 4654
No 226
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=86.19 E-value=0.93 Score=35.52 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=33.4
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 235 RGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 235 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
.++++.+|++.++++...|..+|..|...|.|...-+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 89 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW 89 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 3689999999999999999999999999999987643
No 227
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=86.12 E-value=0.61 Score=40.82 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=41.7
Q ss_pred HHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCccccc
Q 023576 220 MILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKF 277 (280)
Q Consensus 220 ~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~ 277 (280)
.||++|... ..++++.||+++++++.+.+...|..|.+.|.|...- +..|..
T Consensus 34 ~IL~~l~~~-----~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~-~~~Y~L 85 (275)
T 3mq0_A 34 RILDLVAGS-----PRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSA-DGTLRI 85 (275)
T ss_dssp HHHHHHHHC-----SSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECT-TSEEEE
T ss_pred HHHHHHhhC-----CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC-CCcEEe
Confidence 478888753 3589999999999999999999999999999999853 346764
No 228
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=85.87 E-value=0.83 Score=38.17 Aligned_cols=36 Identities=33% Similarity=0.462 Sum_probs=32.5
Q ss_pred CCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 233 RERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 233 ~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
+..=++..+|+++|+++..-||+||..|..+|.|-.
T Consensus 32 pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~ 67 (218)
T 3sxy_A 32 LGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKV 67 (218)
T ss_dssp TTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred CCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 445679999999999999999999999999999964
No 229
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=85.84 E-value=2.2 Score=33.95 Aligned_cols=61 Identities=21% Similarity=0.296 Sum_probs=41.0
Q ss_pred EeeEEEEEEEEEeeec----CCeeEEEEE--------------cCCceEEEEEeccc-ccChhhhccCCCCCEEEEEEEE
Q 023576 70 ITNVTLVGLVYNKEER----ASDVNFTLD--------------DGTGRVVCKRWASE-VFDTREMEAIQDGMYVRLIGNL 130 (280)
Q Consensus 70 i~~V~iVG~V~~~~~~----~t~~~~~Ld--------------DgTG~I~~~~w~~~-~~~~~~~~~~~~G~yVrV~G~l 130 (280)
++.|.|+|.|..--++ ...+.|+|- +.|--+.|..|... ++ .....++.|+.|.|.|+|
T Consensus 6 ~NkV~LiGrLg~DPer~t~G~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe--~~~~yl~KG~~V~VeGrL 83 (148)
T 3k7u_C 6 VNSVTLVGVVHDIQSGFVYEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSA--EVKQKVKEGNVVCVNGRL 83 (148)
T ss_dssp CCCEEEEEEEEEEEEEESSSSEEEEEEEEEECC-----------CEEEEEEEEESHHHHH--HHHHHCCTTCEEEEEEEE
T ss_pred CcEEEEEEEeccCCEeeeCCcEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHH--HHHhhCCCCCEEEEEEEE
Confidence 6788888888653222 235555552 23445999999764 31 223569999999999999
Q ss_pred ee
Q 023576 131 KS 132 (280)
Q Consensus 131 ~~ 132 (280)
+.
T Consensus 84 ~~ 85 (148)
T 3k7u_C 84 RL 85 (148)
T ss_dssp EE
T ss_pred Ee
Confidence 96
No 230
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=85.80 E-value=0.69 Score=46.69 Aligned_cols=65 Identities=25% Similarity=0.266 Sum_probs=47.5
Q ss_pred eEEEEEEEEEeee----cCCeeEEEEEcCCceEEEEEecccccChhhhccCCC--CCEEEEEEEEeee--CCeeEEE
Q 023576 72 NVTLVGLVYNKEE----RASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQD--GMYVRLIGNLKSF--QGKKQIV 140 (280)
Q Consensus 72 ~V~iVG~V~~~~~----~~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~--G~yVrV~G~l~~f--~~~~~i~ 140 (280)
.|.|.|.|.+... ....+..++.|+||.|.+++|... .....+++ |..|.|.|+++.+ .+..++.
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~----~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~ 239 (780)
T 1gm5_A 167 KVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQD----YLQTYLKQLTGKEVFVTGTVKSNAYTGQYEIH 239 (780)
T ss_dssp CCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCC----TTHHHHHTTCSSCEEEEEEECSCCTTSSCCEE
T ss_pred EEEEEEEEEEEEeecCCCCeEEEEEEEECCceEEEEEECcH----HHHhhCccCCCCEEEEEEEEEEccCCCcEEEE
Confidence 7888998877532 234677889999999998877522 22345777 9999999999985 4554443
No 231
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=85.66 E-value=1.2 Score=35.74 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=39.3
Q ss_pred HHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 219 QMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 219 ~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
-.+|-+|.... .+.-++.++|++++++++.-++++|..|...|.|-++-.
T Consensus 30 lr~L~~LA~~~---~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG 79 (159)
T 3lwf_A 30 LTITLELAKRI---GDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 79 (159)
T ss_dssp HHHHHHHHHTT---TSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECS
T ss_pred HHHHHHHHhcC---CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecC
Confidence 34555554321 233589999999999999999999999999999998743
No 232
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=85.65 E-value=1.2 Score=32.91 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=41.0
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhC-CCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLK-IPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~-~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
....||..|.. .++++.+|++.++ ++...|...|..|.+.|.|-...|.
T Consensus 26 ~~~~IL~~L~~-------~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~ 75 (107)
T 2fsw_A 26 WTLLIIFQINR-------RIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYP 75 (107)
T ss_dssp SHHHHHHHHTT-------SCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred cHHHHHHHHHh-------CCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 44567777752 2689999999995 9999999999999999999887765
No 233
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=85.58 E-value=1.2 Score=37.76 Aligned_cols=50 Identities=8% Similarity=0.099 Sum_probs=44.6
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
.++..+..|+++++.. .++++.++++.++.+..-.+++|+.|+.+|.+.-
T Consensus 151 ~~~~~~~~il~~~~~~------g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~ 200 (218)
T 3cuq_B 151 KEEEMVASALETVSEK------GSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCR 200 (218)
T ss_dssp CGGGGHHHHHHHHHHT------SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred chHHHHHHHHHHHHHC------CCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEE
Confidence 4567889999999753 4999999999999999999999999999999985
No 234
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=85.40 E-value=0.82 Score=36.05 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=42.6
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHh-----CCCHHHHHHHHHHHHhCCeeeec
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQL-----KIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-----~~~~~~v~~al~~L~~eG~IYsT 269 (280)
++..+..||++|.+. + -++.++|.+.+ +++...|-.+|+.|.+.|.|-..
T Consensus 17 ~T~qR~~Il~~l~~~-----~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i 71 (145)
T 3eyy_A 17 LTPQRQLVLEAVDTL-----E-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHA 71 (145)
T ss_dssp CCHHHHHHHHHHHHH-----S-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCHHHHHHHHHHHhc-----C-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEE
Confidence 577888899999863 3 68999999988 48999999999999999998553
No 235
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=85.39 E-value=1.1 Score=38.65 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=49.1
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++.-|-.||.+|... .+.+++..+|++.++++...|..+|+.|...|.|.-.-|+
T Consensus 155 gLt~~q~~vL~~L~~~----~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~~~ 210 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQ----NKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERST 210 (250)
T ss_dssp SSCHHHHHHHHHHHTT----TTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECS
T ss_pred CCCHHHHHHHHHHHhC----CCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCC
Confidence 6888888999999764 2236999999999999999999999999999999987765
No 236
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=85.38 E-value=1.2 Score=38.17 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=45.2
Q ss_pred CCCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 212 DGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 212 ~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
..++.-+..||+++... ..++++++.+.++.+....+++|+.|+.+|.++-
T Consensus 163 ~el~~D~~~vLe~a~~~------g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~lwv 213 (233)
T 1u5t_A 163 NELTSDQTKILEICSIL------GYSSISLLKANLGWEAVRSKSALDEMVANGLLWI 213 (233)
T ss_dssp SCCCTTHHHHHHTTTTT------SCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEE
T ss_pred CccchHHHHHHHHHHhc------CcCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 35788899999988642 4899999999999999999999999999999985
No 237
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=85.04 E-value=1.4 Score=37.47 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=33.1
Q ss_pred CCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 233 RERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 233 ~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
+..=++..+|+++|+++..-||+||..|..+|.|...
T Consensus 46 pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~ 82 (237)
T 3c7j_A 46 SGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVE 82 (237)
T ss_dssp TTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3456799999999999999999999999999999753
No 238
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=84.97 E-value=1.6 Score=33.15 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=41.4
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccc
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYK 276 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk 276 (280)
+..+|++.++. .+..+.++++.++++++.+++.|..|..+|.|.. +++++|-
T Consensus 8 l~~~i~~~~~~-------~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~-i~~~~~~ 59 (121)
T 2pjp_A 8 IWQKAEPLFGD-------EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITA-IVKDRYY 59 (121)
T ss_dssp HHHHHGGGCSS-------SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-EETTEEE
T ss_pred HHHHHHHHHHh-------CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE-ecCCceE
Confidence 44556666642 4679999999999999999999999999999988 4555553
No 239
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=84.90 E-value=1.5 Score=36.85 Aligned_cols=44 Identities=11% Similarity=0.260 Sum_probs=36.9
Q ss_pred CCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 234 ERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 234 e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
..+++..+|+++|+++...|..+|..|..+|+|...-| ..+..|
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~-~~i~LT 61 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK-AGYLLT 61 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT-TEEEEC
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC-CCeEEC
Confidence 35899999999999999999999999999999987644 234443
No 240
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=84.86 E-value=1.1 Score=38.19 Aligned_cols=52 Identities=8% Similarity=0.180 Sum_probs=39.1
Q ss_pred hhHHHHHHhcCC---CCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 217 CDQMILDYLQQP---SSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 217 ~~~~Vl~~i~~~---~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
+...|++.|++. +.-.+..=++..+|+++|+++..-||+||..|..+|.|..
T Consensus 29 ~~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~ 83 (239)
T 2hs5_A 29 RTTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAH 83 (239)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 455555555431 1123345679999999999999999999999999999965
No 241
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=84.82 E-value=1.5 Score=30.60 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=43.2
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+-+...++|+.. .=+.++++|..|++..+++.+.|+.|.++|.|-=-+||
T Consensus 8 ll~~Fi~yIk~~------Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDD 57 (72)
T 1wi9_A 8 FLTEFINYIKKS------KVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDD 57 (72)
T ss_dssp HHHHHHHHHHHC------SEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECT
T ss_pred HHHHHHHHHHHc------CeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeC
Confidence 556778888874 36799999999999999999999999999988777776
No 242
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=84.82 E-value=2.3 Score=34.64 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=41.7
Q ss_pred EEeeEEEEEEEEE---eee---cCCeeEEEEE------c--------CCceEEEEEecc-cccChhhhccCCCCCEEEEE
Q 023576 69 EITNVTLVGLVYN---KEE---RASDVNFTLD------D--------GTGRVVCKRWAS-EVFDTREMEAIQDGMYVRLI 127 (280)
Q Consensus 69 ~i~~V~iVG~V~~---~~~---~~t~~~~~Ld------D--------gTG~I~~~~w~~-~~~~~~~~~~~~~G~yVrV~ 127 (280)
-++.|.|+|.|.. ++. ....+.|+|- | .|--|.|..|.. .++ .....++.|+.|.|.
T Consensus 22 ~mNkV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe--~~~~~l~KG~~V~Ve 99 (169)
T 3lgj_A 22 MLNKVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAK--IALQYLHKGSKVYIE 99 (169)
T ss_dssp CEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHHHH--HHHHHCCTTCEEEEE
T ss_pred ceeEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHH--HHHHhCCCCCEEEEE
Confidence 3789999999954 221 2245556552 1 233588999976 331 223459999999999
Q ss_pred EEEeee
Q 023576 128 GNLKSF 133 (280)
Q Consensus 128 G~l~~f 133 (280)
|+|+.-
T Consensus 100 GrL~~r 105 (169)
T 3lgj_A 100 GKLQTR 105 (169)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999864
No 243
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=84.74 E-value=1.1 Score=37.45 Aligned_cols=52 Identities=8% Similarity=0.174 Sum_probs=39.5
Q ss_pred hhHHHHHHhcCC---CCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 217 CDQMILDYLQQP---SSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 217 ~~~~Vl~~i~~~---~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
+...|++.|++. +.-....=++..+|+++|+++..-||+||..|..+|.|-.
T Consensus 17 ~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~ 71 (222)
T 3ihu_A 17 ASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDL 71 (222)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 455555555431 1123455788999999999999999999999999999965
No 244
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=84.70 E-value=1.5 Score=37.66 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=45.3
Q ss_pred CCCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 212 DGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 212 ~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
..++.-|..||+++... ..++++++++.++.+....+++|+.|+.+|.++-
T Consensus 150 ~el~~D~~~vLela~~~------g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gllwv 200 (234)
T 3cuq_A 150 AELNMDHTVVLQLAEKN------GYVTVSEIKASLKWETERARQVLEHLLKEGLAWL 200 (234)
T ss_dssp CCCCHHHHHHHHHHTTT------SEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCEE
T ss_pred CccchHHHHHHHHHHhc------CcCcHHHHHHHhCCCHHHHHHHHHHHHhCCCEEE
Confidence 35788999999998642 4899999999999999999999999999999985
No 245
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=84.69 E-value=1.9 Score=31.22 Aligned_cols=42 Identities=19% Similarity=0.476 Sum_probs=34.7
Q ss_pred CCCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 212 DGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 212 ~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
..|++.+++|+.++. +|.+..+|++.|++++..|+..+..+.
T Consensus 26 ~~Lt~~e~~vl~l~~--------~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 26 SGLTDQERTLLGLLS--------EGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp -CCCHHHHHHHHHHH--------TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468899999999872 389999999999999999887776554
No 246
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=84.68 E-value=5.2 Score=30.87 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=47.8
Q ss_pred EEeeEEEEEEEEEe---ee---cCCeeEEEEE------c------CCc-------eEEEEEecc-cccChhhhccCCCCC
Q 023576 69 EITNVTLVGLVYNK---EE---RASDVNFTLD------D------GTG-------RVVCKRWAS-EVFDTREMEAIQDGM 122 (280)
Q Consensus 69 ~i~~V~iVG~V~~~---~~---~~t~~~~~Ld------D------gTG-------~I~~~~w~~-~~~~~~~~~~~~~G~ 122 (280)
.++.|.|+|.|..- .. ....+.|+|- | .+| -+.|..|.+ .+. .....+..|+
T Consensus 13 ~mN~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae--~~~~~l~KG~ 90 (132)
T 3ull_A 13 SLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRD--VAYQYVKKGS 90 (132)
T ss_dssp CEEEEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHH--HHHHHCCTTC
T ss_pred cCcEEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHH--HHHhhCCCCC
Confidence 47899999999652 11 2245556553 1 123 366666653 221 1234599999
Q ss_pred EEEEEEEEee--eC---Ce----eEEEEEEEeeCCCc
Q 023576 123 YVRLIGNLKS--FQ---GK----KQIVAFSVRPVTNF 150 (280)
Q Consensus 123 yVrV~G~l~~--f~---~~----~~i~~~~ir~v~d~ 150 (280)
.|.|.|+|+. |. |+ ..|.+..|..+...
T Consensus 91 ~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 91 RIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp EEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred EEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 9999999985 42 32 35888888777654
No 247
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=84.61 E-value=0.93 Score=42.33 Aligned_cols=56 Identities=11% Similarity=0.155 Sum_probs=49.3
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+|+.-|-.||.+|.+. .+.+++..+|+++++++...|...|+.|...|+|...-|+
T Consensus 401 ~lt~~q~~vl~~l~~~----~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~ 456 (487)
T 1hsj_A 401 NLNYEEIYILNHILRS----ESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSL 456 (487)
T ss_dssp CCCHHHHHHHHHHHTC----SCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECC
T ss_pred CCCHHHHHHHHHHHhC----CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCC
Confidence 6888888899999763 2358999999999999999999999999999999987665
No 248
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=84.53 E-value=1.5 Score=35.23 Aligned_cols=51 Identities=12% Similarity=0.211 Sum_probs=43.0
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHh-------CCCHHHHHHHHHHHHhCCeeeec
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQL-------KIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-------~~~~~~v~~al~~L~~eG~IYsT 269 (280)
+++.+..||++|.+. +.-++.++|.+.+ +++...|-.+|+.|.+.|.|-..
T Consensus 31 ~T~qR~~IL~~L~~~-----~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i 88 (162)
T 4ets_A 31 YTKQREVLLKTLYHS-----DTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSI 88 (162)
T ss_dssp CCHHHHHHHHHHHSC-----CSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHHHHhC-----CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 467888899999874 3578999998766 38899999999999999999765
No 249
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=84.39 E-value=0.32 Score=41.27 Aligned_cols=60 Identities=22% Similarity=0.372 Sum_probs=45.4
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCH--HHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHV--NELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v--~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
++..+..+|++|-... +.|++. .+|+++++++...|..+|+.|...|+|...-| ..+..|
T Consensus 4 lt~~~e~yL~~i~~l~----~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~-~~v~LT 65 (226)
T 2qq9_A 4 LVATTEMYLRTIYELE----EEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASD-RSLQMT 65 (226)
T ss_dssp HHHHHHHHHHHHHHHH----HHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT-SBEEEC
T ss_pred CCHHHHHHHHHHHHHh----hcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC-CCeEEC
Confidence 5567777888775531 235655 99999999999999999999999999987544 334444
No 250
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=84.31 E-value=0.96 Score=40.22 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=31.8
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 235 RGVHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 235 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
.++++++|+++|++++..||.-|++|.++|.|-
T Consensus 20 ~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 20 QDMTQAQIARELGIYRTTISRLLKRGREQGIVT 52 (315)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 489999999999999999999999999999996
No 251
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=84.19 E-value=2 Score=33.34 Aligned_cols=51 Identities=14% Similarity=0.219 Sum_probs=42.5
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHh-CCCHHHHHHHHHHHHhCCeeeecCCCc
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQL-KIPQKKIMDSIASLENEGLIYSTIDEF 273 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-~~~~~~v~~al~~L~~eG~IYsTiDd~ 273 (280)
.....||..|.. ..+.+.+|++.+ +++...+...|..|.++|.|-.+.+.+
T Consensus 26 kW~l~IL~~L~~-------g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~ 77 (131)
T 4a5n_A 26 KWKGILFYHMID-------GKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQ 77 (131)
T ss_dssp SSHHHHHHHHTT-------SCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECS
T ss_pred cCHHHHHHHHhc-------CCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 355667777752 267999999999 999999999999999999999887654
No 252
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=83.96 E-value=1.6 Score=32.07 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=34.8
Q ss_pred CCCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 212 DGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 212 ~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
..|++-+++||.++. +|.+..||++.|++++..|+..+..+.
T Consensus 33 ~~Lt~re~~Vl~l~~--------~G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA--------EGFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp SSCCHHHHHHHHHHH--------HTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468899999998874 389999999999999999887766543
No 253
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=83.76 E-value=1.3 Score=32.91 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=42.4
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHh-CCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQL-KIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
..+-.||..|.. .++++.+|++.+ +++...|...|+.|.+.|.|-...|.
T Consensus 22 ~~~~~IL~~L~~-------~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~ 72 (112)
T 1z7u_A 22 KWKLSLMDELFQ-------GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFN 72 (112)
T ss_dssp TTHHHHHHHHHH-------SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred ccHHHHHHHHHh-------CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 355678887753 268999999999 99999999999999999999887664
No 254
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=83.59 E-value=1.3 Score=34.15 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=40.8
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHh-CCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQL-KIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
..-.||..|.. .++++.+|++.+ +++...+...|..|.+.|.|-.+.|.
T Consensus 36 w~l~IL~~L~~-------g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~ 85 (131)
T 1yyv_A 36 WGVLILVALRD-------GTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYP 85 (131)
T ss_dssp HHHHHHHHGGG-------CCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred cHHHHHHHHHc-------CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecC
Confidence 44457777652 268999999999 79999999999999999999987764
No 255
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=83.55 E-value=2.2 Score=35.56 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=40.8
Q ss_pred CeEECCEEEeeEEEEEEEEE---eee---cCCeeEEEEE------cC-Cc-------eEEEEEecc-cccChhhhccCCC
Q 023576 62 NFMINGLEITNVTLVGLVYN---KEE---RASDVNFTLD------DG-TG-------RVVCKRWAS-EVFDTREMEAIQD 120 (280)
Q Consensus 62 ~~~i~g~~i~~V~iVG~V~~---~~~---~~t~~~~~Ld------Dg-TG-------~I~~~~w~~-~~~~~~~~~~~~~ 120 (280)
.++.- ..++.|.|+|.|.. ++. ....+.|+|- |. +| -|.|..|.. .++ .....++.
T Consensus 19 ~~~Ma-~~mNkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe--~~~~yL~K 95 (193)
T 3pgz_A 19 PGSMA-GSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVK--VVEQYLKK 95 (193)
T ss_dssp ----C-CCEEEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHH--HHHHHCCT
T ss_pred hhhHh-hhcCEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHH--HHHhhcCC
Confidence 44433 34789999999854 221 2245566553 11 23 488999974 321 12346999
Q ss_pred CCEEEEEEEEee
Q 023576 121 GMYVRLIGNLKS 132 (280)
Q Consensus 121 G~yVrV~G~l~~ 132 (280)
|+.|.|.|+|+.
T Consensus 96 Gs~V~VeGrL~t 107 (193)
T 3pgz_A 96 GSKIYIEGQLQT 107 (193)
T ss_dssp TCEEEEEEEEEE
T ss_pred CCEEEEEEEEEE
Confidence 999999999984
No 256
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=83.55 E-value=1.3 Score=34.93 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=37.9
Q ss_pred HHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 219 QMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 219 ~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
-.+|-+|... .+.-++.++|++++++++.-|++.+..|...|.|.++-.
T Consensus 17 l~~L~~La~~----~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG 65 (149)
T 1ylf_A 17 VHILSILKNN----PSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG 65 (149)
T ss_dssp HHHHHHHHHS----CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred HHHHHHHHhC----CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC
Confidence 3455555432 123589999999999999999999999999999998643
No 257
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=83.52 E-value=0.78 Score=41.84 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=39.7
Q ss_pred HHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 219 QMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 219 ~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
+.||++|+ .+ .++..+|++.++++...|...+++|+++|.|.++
T Consensus 23 ~~il~~l~-~~------~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 23 SRILKRIM-KS------PVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp CCSHHHHH-HS------CBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHH-cC------CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 35899998 62 6899999999999999999999999999999885
No 258
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=83.36 E-value=1.4 Score=35.02 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=43.9
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
.+.+..||.+|.. ..+++.+|++.++++...|...|..|.+.|.|-..-|.
T Consensus 57 ~p~R~~IL~~L~~-------~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~G 107 (151)
T 3f6v_A 57 EPTRRRLVQLLTS-------GEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDG 107 (151)
T ss_dssp SHHHHHHHHHGGG-------CCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CHHHHHHHHHHHh-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 4577889999973 25899999999999999999999999999999876544
No 259
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=83.19 E-value=0.92 Score=39.23 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=48.7
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++.-|=.||.+|.+. .+.|+++.+|++++.++...|...|+.|...|.|.-.-|+
T Consensus 31 ~lt~~q~~vL~~L~~~----~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~ 86 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQ----QENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSK 86 (250)
T ss_dssp SSCHHHHHHHHHHHSC----SCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECS
T ss_pred CCCHHHHHHHHHHHhc----CCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCC
Confidence 4677888899999863 2358999999999999999999999999999999987665
No 260
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=83.15 E-value=1.4 Score=32.91 Aligned_cols=51 Identities=24% Similarity=0.342 Sum_probs=41.8
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+..+..||.+|.+ .++++.+|++.++++...|...|..|.+.|.|...-|.
T Consensus 31 ~~~~~~il~~L~~-------~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~~~ 81 (119)
T 2lkp_A 31 TPSRLMILTQLRN-------GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRAG 81 (119)
T ss_dssp CHHHHHHHHHHHH-------CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEEET
T ss_pred CHHHHHHHHHHHH-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 3456678888764 25799999999999999999999999999999764433
No 261
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=82.70 E-value=1 Score=37.34 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=37.9
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCee
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLI 266 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~I 266 (280)
=|+.|++.|++. .-++++++++.|+.++..||.-|.+|...+.+
T Consensus 13 R~~~i~~~l~~~------~~~~~~~la~~~~vs~~TiRrDl~eL~~~~l~ 56 (190)
T 4a0z_A 13 RREAIRQQIDSN------PFITDHELSDLFQVSIQTIRLDRTYLNIPELR 56 (190)
T ss_dssp HHHHHHHHHHHC------TTCCHHHHHHHHTSCHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHC------CCEeHHHHHHHHCCCHHHHHHHHHHhcCcchh
Confidence 567799999874 25899999999999999999999999887643
No 262
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=82.61 E-value=0.31 Score=37.58 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=37.6
Q ss_pred hhHHHHHHhcCCCCCCCCCcc-CHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 217 CDQMILDYLQQPSSSERERGV-HVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv-~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
+...|.+.|.... -....=+ +..+|++.|+++...|++|+..|.++|.|+..
T Consensus 16 i~~~l~~~I~~g~-~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 68 (126)
T 3ic7_A 16 IADRICDDILLGQ-YEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK 68 (126)
T ss_dssp HHHHHHHHHHTTS-SCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHhCC-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 4455555554421 1223345 78999999999999999999999999999864
No 263
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=82.46 E-value=1.8 Score=30.85 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=35.2
Q ss_pred CCCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 212 DGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 212 ~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
..|++.+++|+.++. .|.+..+|++.|++++..|+..+..+.
T Consensus 28 ~~Lt~~e~~vl~l~~--------~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 28 EMLTEREMEILLLIA--------KGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp GGCCSHHHHHHHHHH--------TTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 358889999999863 389999999999999999988776654
No 264
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=82.34 E-value=2.2 Score=29.20 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=33.8
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
.|++.++.|+.++ . .|.+..+|++.+++++..|+..+..+.
T Consensus 16 ~L~~~e~~vl~l~-~-------~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 16 TLSERERQVLSAV-V-------AGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HHCHHHHHHHHHH-T-------TTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHH-H-------cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4677888899886 2 389999999999999999988776654
No 265
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=82.34 E-value=2.1 Score=27.77 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=28.7
Q ss_pred hHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 218 DQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 218 ~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
+++|+.++. +|.+..+|++.+++++..|+..+..+.
T Consensus 3 e~~vl~l~~--------~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 3 ERQVLKLID--------EGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HHHHHHHHH--------TSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--------cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 566777753 388999999999999999988776554
No 266
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=82.14 E-value=5 Score=31.72 Aligned_cols=55 Identities=20% Similarity=0.322 Sum_probs=38.0
Q ss_pred eeEEEEEEEEEeeecCCeeEEEEEcCC---------------------c--eEEEEEecccccChhhhccCCCCCEEEEE
Q 023576 71 TNVTLVGLVYNKEERASDVNFTLDDGT---------------------G--RVVCKRWASEVFDTREMEAIQDGMYVRLI 127 (280)
Q Consensus 71 ~~V~iVG~V~~~~~~~t~~~~~LdDgT---------------------G--~I~~~~w~~~~~~~~~~~~~~~G~yVrV~ 127 (280)
..+.+++.|+.+-.....+.+.|-|.| | +|.+.+|.+.+. ...+.+++|+||++.
T Consensus 15 ~F~Dl~~qVv~~~~~~~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~ha~--~ar~~lk~Gd~v~L~ 92 (143)
T 4hik_A 15 QRCSFYAQVIKTWYSDKNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDF--YCRNYIKEGDYVVMK 92 (143)
T ss_dssp CEEEEEEEEEEEEECSSCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHHHH--HHTTTCCTTCEEEEE
T ss_pred CeEEEEEEEEEEEcCCCeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcHHH--HHHhhCCCCCEEEEE
Confidence 456778888887555577888888877 3 467777766431 122459999999975
No 267
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=81.99 E-value=0.76 Score=37.80 Aligned_cols=61 Identities=25% Similarity=0.273 Sum_probs=39.4
Q ss_pred EeeEEEEEEEEEe---ee---cCCeeEEEEE------c-CCc-------eEEEEEecccccChhhhccCCCCCEEEEEEE
Q 023576 70 ITNVTLVGLVYNK---EE---RASDVNFTLD------D-GTG-------RVVCKRWASEVFDTREMEAIQDGMYVRLIGN 129 (280)
Q Consensus 70 i~~V~iVG~V~~~---~~---~~t~~~~~Ld------D-gTG-------~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~ 129 (280)
++.|.|+|.|..- +. ....+.|+|- | .|| -|.|+.|...++ .....|+.|+.|.|.|+
T Consensus 6 ~N~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae--~~~~~l~KG~~V~VeGr 83 (178)
T 1eqq_A 6 VNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAE--VASEYLRKGSQVYIEGQ 83 (178)
T ss_dssp EEEEEEEEEESSSCCCCEETTTEECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHH--HHHHHCCTTCEEEECCE
T ss_pred eeEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHH--HHHHhcCCCCEEEEEEE
Confidence 6788999998652 11 1234445442 1 123 488999976431 22345999999999999
Q ss_pred Eee
Q 023576 130 LKS 132 (280)
Q Consensus 130 l~~ 132 (280)
|+.
T Consensus 84 L~~ 86 (178)
T 1eqq_A 84 LRT 86 (178)
T ss_dssp EEE
T ss_pred EEe
Confidence 986
No 268
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=81.98 E-value=4 Score=27.20 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=34.9
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
.|++-++.|+.+.--.. ..+|.+..+|++.+++++..|+..+....
T Consensus 5 ~L~~~er~il~l~~~l~---~~~g~s~~eIA~~lgis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGID---MNTDYTLEEVGKQFDVTRERIRQIEAKAL 50 (68)
T ss_dssp CCCHHHHHHHHHHTTTT---SSSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccC---CCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47888899988765211 13599999999999999999887665443
No 269
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=81.92 E-value=0.11 Score=41.73 Aligned_cols=48 Identities=27% Similarity=0.427 Sum_probs=41.9
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
+..++..|++.|+.. .-++..+|+++++++...|+++|..|..+|.|.
T Consensus 11 ~d~l~~~Il~~l~~~------~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~ 58 (163)
T 2gqq_A 11 LDRIDRNILNELQKD------GRISNVELSKRVGLSPTPCLERVRRLERQGFIQ 58 (163)
T ss_dssp CCSHHHHHHHHHHHC------SSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEE
T ss_pred hhHHHHHHHHHHHhC------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 567899999988752 346899999999999999999999999999995
No 270
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=81.71 E-value=4.9 Score=34.79 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=49.0
Q ss_pred EeeEEEEEEEEEe---e---ecCCeeEEEEE------cCCc-------eEEEEEecccccChhhhccCCCCCEEEEEEEE
Q 023576 70 ITNVTLVGLVYNK---E---ERASDVNFTLD------DGTG-------RVVCKRWASEVFDTREMEAIQDGMYVRLIGNL 130 (280)
Q Consensus 70 i~~V~iVG~V~~~---~---~~~t~~~~~Ld------DgTG-------~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l 130 (280)
++.|.|+|.|..- + .....+.|+|. |..| -|.|..|...++ .....++.|+.|.|.|+|
T Consensus 5 ~N~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae--~~~~~l~KG~~V~V~G~L 82 (264)
T 2fxq_A 5 LNQVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAE--MWGDLLEKGQLIFVEGRL 82 (264)
T ss_dssp EEEEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHH--HHTTTCCTTCEEEEEEEE
T ss_pred eeEEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHH--HHHHhCCCCCEEEEEEEE
Confidence 5778888887542 1 12245555552 2223 478888865431 123468999999999999
Q ss_pred ee--eC--Ce----eEEEEEEEeeCCCch
Q 023576 131 KS--FQ--GK----KQIVAFSVRPVTNFD 151 (280)
Q Consensus 131 ~~--f~--~~----~~i~~~~ir~v~d~N 151 (280)
+. |. |+ ..|.+..|..+...+
T Consensus 83 ~~~~~~~dG~~r~~~ev~a~~i~~l~~~~ 111 (264)
T 2fxq_A 83 EYRQWEKDGEKKSEVQVRAEFIDPLEGRG 111 (264)
T ss_dssp EEC---------CCEEEEEEEEEECCCC-
T ss_pred EeeeEEeCCEEEEEEEEEEEEEEECcCCc
Confidence 65 54 22 348888898887654
No 271
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=81.69 E-value=3.2 Score=30.87 Aligned_cols=51 Identities=16% Similarity=0.269 Sum_probs=41.3
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHh-CCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQL-KIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
+....||..|.. .+.-+++.+|++.+ +++...+...|..|.+.|.|-...+
T Consensus 27 ~wrl~IL~~L~~-----g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 27 KYTMLIISVLGN-----GSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp TTHHHHHHHHTS-----SSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred ccHHHHHHHHhc-----CCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 456678888863 12225599999999 8999999999999999999987654
No 272
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=81.65 E-value=4.3 Score=27.44 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=35.4
Q ss_pred CCCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHH----HHHHHH
Q 023576 212 DGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMD----SIASLE 261 (280)
Q Consensus 212 ~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~----al~~L~ 261 (280)
..|++-++.|+...--.. .++|.+..+|++.+++++..|+. |+..|-
T Consensus 9 ~~L~~~er~il~l~~~l~---~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLI---DGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTT---TSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcc---cCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 357888899888755321 23599999999999999999887 555554
No 273
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=81.59 E-value=1.3 Score=35.75 Aligned_cols=47 Identities=23% Similarity=0.349 Sum_probs=38.9
Q ss_pred HHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 219 QMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 219 ~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
-.+|-+|... .+.-++.++|+++++++..-|+++|..|...|.|-++
T Consensus 15 lr~l~~La~~----~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 15 VHSILYLDAH----RDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHHTT----TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHhC----CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 4566666653 1345899999999999999999999999999999765
No 274
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=81.56 E-value=5.2 Score=33.19 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=29.9
Q ss_pred eeecCCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEE
Q 023576 82 KEERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIG 128 (280)
Q Consensus 82 ~~~~~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G 128 (280)
......++.|.|.|.||.++|...-.-. .-..++||-+|++.
T Consensus 130 K~v~~~~~~YeI~DnTG~MeVvv~G~~~-----~i~CEeGDKLrL~c 171 (204)
T 3rlo_A 130 KNVRGEFTYYEIQDNTGKMEVVVHGRLT-----TINCEEGDKLKLTC 171 (204)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECGGGG-----GCCCCTTCEEEEEE
T ss_pred EEeccceEEEEEecCCCcEEEEEeccCc-----ccccCCCCeeEEEE
Confidence 3445578999999999999999764321 23467888666553
No 275
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=81.52 E-value=3.5 Score=27.20 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=32.9
Q ss_pred CCCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHH
Q 023576 212 DGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASL 260 (280)
Q Consensus 212 ~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L 260 (280)
..|++.++.|+.+.-- .|.+..+|++.+++++..|+..+...
T Consensus 14 ~~L~~~~r~il~l~~~-------~g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 14 ADLTTDQREALLLTQL-------LGLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp TSSCHHHHHHHHHHHT-------SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH-------cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3577888888886432 38899999999999999887766543
No 276
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=81.51 E-value=6.6 Score=37.37 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=49.9
Q ss_pred eeEEEEEEEEEeee----c--CCeeEEEEEcCC-c-------eE-----EEEEecccccChhhhccC-CCCCEEEE-EEE
Q 023576 71 TNVTLVGLVYNKEE----R--ASDVNFTLDDGT-G-------RV-----VCKRWASEVFDTREMEAI-QDGMYVRL-IGN 129 (280)
Q Consensus 71 ~~V~iVG~V~~~~~----~--~t~~~~~LdDgT-G-------~I-----~~~~w~~~~~~~~~~~~~-~~G~yVrV-~G~ 129 (280)
..|.|+|+|+.+.. + .=.++|+|-|.+ . -| .|.+|.+.. +..+.+ .+||.|++ .-+
T Consensus 50 ~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~---e~LP~V~~~GDII~Lhrvk 126 (495)
T 1jb7_A 50 QPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRF---EDLPIIHRAGDIIRVHRAT 126 (495)
T ss_dssp SCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSG---GGSCCCCEETCEEEEEEEE
T ss_pred CeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCCh---HHCCCCCCCCCEEEEEEEE
Confidence 35889999988742 1 236789999954 2 16 999997754 235666 69999999 568
Q ss_pred EeeeCCeeEEEE
Q 023576 130 LKSFQGKKQIVA 141 (280)
Q Consensus 130 l~~f~~~~~i~~ 141 (280)
|+.|+++.++..
T Consensus 127 Iq~~ng~~~~v~ 138 (495)
T 1jb7_A 127 LRLYNGQRQFNA 138 (495)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEECCcEEEEe
Confidence 889999988644
No 277
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=80.85 E-value=1.8 Score=36.60 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=31.1
Q ss_pred CCcc-CHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 234 ERGV-HVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 234 e~Gv-~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
.+=+ +..+|+++|+++..-||+||..|..+|.|-.
T Consensus 25 G~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 25 GDHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred CCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 3456 4779999999999999999999999999975
No 278
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=80.44 E-value=3.4 Score=29.37 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=31.9
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIAS 259 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~ 259 (280)
.|++.++.||.+.-- +|.+..+|++.|++++..|+..+..
T Consensus 37 ~L~~~~r~vl~l~~~-------~g~s~~eIA~~lgis~~tV~~~l~r 76 (92)
T 3hug_A 37 QLSAEHRAVIQRSYY-------RGWSTAQIATDLGIAEGTVKSRLHY 76 (92)
T ss_dssp TSCHHHHHHHHHHHT-------SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-------cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 578888888876432 4899999999999999998776654
No 279
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=79.34 E-value=0.38 Score=43.54 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=0.0
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecC
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTI 270 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTi 270 (280)
..-+..||..|... .+++..+|+++|++++..|+..|+.|.++|.|...+
T Consensus 19 ~~r~~~iL~~l~~~------~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~~~ 68 (345)
T 2o0m_A 19 LQERFQILRNIYWM------QPIGRRSLSETMGITERVLRTETDVLKQLNLIEPSK 68 (345)
T ss_dssp --------------------------------------------------------
T ss_pred hHHHHHHHHHHHHc------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 44566788888653 489999999999999999999999999999996333
No 280
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=79.02 E-value=3.1 Score=30.57 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=44.5
Q ss_pred CCCCchhHHHHHHhcCCCCCCCCCccCHHHHHH-HhCCCHHHHHHHHHHHHhCCeee
Q 023576 212 DGLKDCDQMILDYLQQPSSSERERGVHVNELSE-QLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 212 ~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~-~l~~~~~~v~~al~~L~~eG~IY 267 (280)
.+++..|-.||.+|... . .++..+|++ .++++...|-..|+-|...|.|=
T Consensus 12 ~~L~~~QfsiL~~L~~~-----~-~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAKK-----D-FITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHHS-----T-TBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred cCCCHHHHHHHHHHHHC-----C-CCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 35788888999999763 2 889999999 88999999999999999999996
No 281
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=78.61 E-value=5.7 Score=27.95 Aligned_cols=45 Identities=11% Similarity=0.161 Sum_probs=34.1
Q ss_pred CCCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHH
Q 023576 212 DGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIAS 259 (280)
Q Consensus 212 ~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~ 259 (280)
..|++-++.|+...--.. .++|.+..+|++.++++...|+..+..
T Consensus 17 ~~L~~~er~vl~l~~~l~---~~~~~s~~EIA~~lgis~~tV~~~~~r 61 (87)
T 1tty_A 17 KTLSPREAMVLRMRYGLL---DGKPKTLEEVGQYFNVTRERIRQIEVK 61 (87)
T ss_dssp TTSCHHHHHHHHHHHTTT---TSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHccC---CCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 357888888888654321 236999999999999999988776543
No 282
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=78.51 E-value=5.4 Score=34.64 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=43.5
Q ss_pred EEeeEEEEEEEEEeee----cCCeeEEEEE------c--------CCceEEEEEeccc--ccChhhhccCCCCCEEEEEE
Q 023576 69 EITNVTLVGLVYNKEE----RASDVNFTLD------D--------GTGRVVCKRWASE--VFDTREMEAIQDGMYVRLIG 128 (280)
Q Consensus 69 ~i~~V~iVG~V~~~~~----~~t~~~~~Ld------D--------gTG~I~~~~w~~~--~~~~~~~~~~~~G~yVrV~G 128 (280)
.++.|.|+|.+.+.+. ......|+|- | .|--+.|..|... ++ ....++.|+.|.|.|
T Consensus 145 ~lNkV~LiGrL~DPElR~t~G~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wgk~~~AE---i~~~L~KG~~V~VeG 221 (257)
T 4dni_A 145 SVNSVTLVGVVHDIQSGFVYEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAE---VKQKVKEGNVVCVNG 221 (257)
T ss_dssp CEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEESHHHHHH---HHHHCCTTCEEEEEE
T ss_pred ccCEEEEEEEcCCCEEEEeCCcEEEEEEEEECCCccCCCCceEccceEEEEEEEECCccHHH---HHhhCCCCCEEEEEE
Confidence 3899999999944332 2346667762 2 1234899999765 42 245699999999999
Q ss_pred EEeee
Q 023576 129 NLKSF 133 (280)
Q Consensus 129 ~l~~f 133 (280)
+|+.-
T Consensus 222 rL~tr 226 (257)
T 4dni_A 222 RLRLS 226 (257)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 99963
No 283
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=78.19 E-value=2.3 Score=35.61 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=37.1
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
-..+.|++|-.. ...+...+|+++|++++..|+.+|+.|.+.|+|-.
T Consensus 16 s~EdYLk~I~~L-----~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~ 62 (200)
T 2p8t_A 16 TVEDVLAVIFLL-----KEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRS 62 (200)
T ss_dssp CHHHHHHHHHHT-----TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHH-----cCCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 344555554443 13689999999999999999999999999999944
No 284
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=77.57 E-value=2.9 Score=34.17 Aligned_cols=60 Identities=12% Similarity=0.212 Sum_probs=35.2
Q ss_pred eEEEEEcCCceEEEEEeccccc------C-------hhhh-ccCC-CC----------------CEEEEEEEEeeeCCee
Q 023576 89 VNFTLDDGTGRVVCKRWASEVF------D-------TREM-EAIQ-DG----------------MYVRLIGNLKSFQGKK 137 (280)
Q Consensus 89 ~~~~LdDgTG~I~~~~w~~~~~------~-------~~~~-~~~~-~G----------------~yVrV~G~l~~f~~~~ 137 (280)
+.+.|.|.||.+.+..|.+... + ..+. ..+. .+ =.+||..+...|++..
T Consensus 77 l~~~i~D~TG~~wvt~F~e~ae~ilG~~~~~~~~~~A~eL~~~l~e~~~~~~~~~~~~~~~~k~~~frlr~k~e~ynde~ 156 (172)
T 3u50_C 77 LRAFVQDSTGTIPVMIFDQQSSQLINQIDPSIHVQEAGQYVKNCIENGQEEIIRQLFSKLDFARFIFEIQFENKEFNNEQ 156 (172)
T ss_dssp EEEEEEETTEEEEEEECHHHHHHHHHHHCTTSCGGGHHHHHHHHHTTTCHHHHHHHHHTTTTCEEEEEEEEEECC-----
T ss_pred EEEEEEeCCCCEEEEEEhHHHHHHhCCCCCccchhhHHHHHHHHHhcCcHHHHHHHHHhhcCcEEEEEEEEEEcccCCEe
Confidence 6789999999999999965322 1 1111 1111 11 2489999999999875
Q ss_pred E--EEEEEEeeCC
Q 023576 138 Q--IVAFSVRPVT 148 (280)
Q Consensus 138 ~--i~~~~ir~v~ 148 (280)
. .++.++.|++
T Consensus 157 Rvr~tv~~~~p~~ 169 (172)
T 3u50_C 157 EIAYKVLKIEKEN 169 (172)
T ss_dssp -EEEEEEEEEEC-
T ss_pred EEEEEEEEeeecC
Confidence 5 4777777873
No 285
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=77.53 E-value=4.2 Score=31.73 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=38.0
Q ss_pred HHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 219 QMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 219 ~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
-.+|-+|... .+ + +.++|++++++|..-+++.|..|...|.|-++-.
T Consensus 12 l~~L~~La~~----~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG 58 (145)
T 1xd7_A 12 IHILSLISMD----EK-T-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG 58 (145)
T ss_dssp HHHHHHHHTC----SC-C-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS
T ss_pred HHHHHHHHhC----CC-C-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC
Confidence 3456666543 12 4 9999999999999999999999999999987643
No 286
>2oq0_A Gamma-interferon-inducible protein IFI-16; OB folds, beta-barrels, structural genomics, PSI-2, protein initiative; 2.00A {Homo sapiens} SCOP: b.40.16.1 b.40.16.1
Probab=77.28 E-value=24 Score=29.31 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=35.3
Q ss_pred eeecCCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEE-EEeeeCCeeEEE
Q 023576 82 KEERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIG-NLKSFQGKKQIV 140 (280)
Q Consensus 82 ~~~~~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G-~l~~f~~~~~i~ 140 (280)
.......+.|.|.|.||.+++...-.-. .-..++||-+|+.. .|+.-.++++|.
T Consensus 138 k~v~~~~~~yeI~D~tG~MeVvv~G~~~-----~i~CeeGdkLrL~cF~L~~~~~~~~L~ 192 (206)
T 2oq0_A 138 KTVNQKTTIYEIQDDRGKMDVVGTGQCH-----NIPCEEGDKLQLFCFRLRKKNQMSKLI 192 (206)
T ss_dssp EEECSSEEEEEEEETTEEEEEEEEGGGS-----SCCCCTTCEEEEEEEEEEEETTEEEEE
T ss_pred EeeccceEEEEEccCCCcEEEEEeCccc-----ccccCCCCEEEEEEEEeeccCCcceEE
Confidence 3445668999999999999999764321 13467888776653 344444555554
No 287
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=77.26 E-value=3.4 Score=31.52 Aligned_cols=42 Identities=7% Similarity=0.246 Sum_probs=37.4
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCe
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGL 265 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~ 265 (280)
+.+...++++++ |+++++||+.-+++..+|..-|..|+.+|.
T Consensus 20 ~t~~~t~~l~~~--------G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~ 61 (122)
T 3iuo_A 20 KMKVSIVQQIDR--------KVALDDIAVSHGLDFPELLSEVETIVYSGT 61 (122)
T ss_dssp HHHHHHHHHHHT--------TCCHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHc--------CCCHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 466778888863 999999999999999999999999999996
No 288
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=76.32 E-value=2 Score=32.77 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=43.1
Q ss_pred CCchhHHHHHHhcCC-CCCCCCCccCHHHHHHHh--CCCHHHHHHHHHHHHhCCeeeec
Q 023576 214 LKDCDQMILDYLQQP-SSSERERGVHVNELSEQL--KIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~-~~~~~e~Gv~v~~I~~~l--~~~~~~v~~al~~L~~eG~IYsT 269 (280)
...++.+|++.|.+= .......|++.+++.+++ ++++.-+...|+.|+.+|.|-.+
T Consensus 64 ~~~l~~~l~~~L~~yH~~~P~~~G~~keeLr~~~~~~~~~~~~~~ll~~l~~~g~l~~~ 122 (135)
T 2v9v_A 64 YQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLA 122 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCEEec
Confidence 345777787777540 011346799999999997 48998899999999999999775
No 289
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=76.27 E-value=4 Score=32.61 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=40.0
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhC-CCHHHHHHHHHHHHhCCeeee
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLK-IPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~-~~~~~v~~al~~L~~eG~IYs 268 (280)
.-+..||.+|... ...-.++++|+..+. ++...|...|+.|.+.|.|-.
T Consensus 29 ~tR~~IL~~Ll~~----p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~ 78 (151)
T 3u1d_A 29 ETRLDVLHQILAQ----PDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEK 78 (151)
T ss_dssp HHHHHHHHHHHHS----TTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHcC----CCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEE
Confidence 4556788887653 122479999999997 999999999999999999974
No 290
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=76.12 E-value=3.2 Score=34.55 Aligned_cols=50 Identities=34% Similarity=0.511 Sum_probs=43.2
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
.+.+..||.+|.. ..+++.+|++.++++...|...|..|.+.|.|-..-+
T Consensus 14 ~~~rl~IL~~L~~-------~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 14 NETRRRILFLLTK-------RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp SHHHHHHHHHHHH-------SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CHHHHHHHHHHHh-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEee
Confidence 3567789999853 2589999999999999999999999999999988655
No 291
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=75.87 E-value=0.75 Score=39.55 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=4.4
Q ss_pred cc-CHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 236 GV-HVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 236 Gv-~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
=+ +..+++++++++...|++||..|.++|.|+.
T Consensus 39 ~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~ 72 (247)
T 2ra5_A 39 LLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVR 72 (247)
T ss_dssp -----------------------------CEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 35 7899999999999999999999999999986
No 292
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=74.16 E-value=4.8 Score=34.68 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=42.1
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccc
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYK 276 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk 276 (280)
+...|++.++..+. .--.+.+|+..+++++.++++.|..|+.+|.|.. ++++.|=
T Consensus 142 ~~~~i~~~~~~~g~----~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~-l~~~~~~ 196 (258)
T 1lva_A 142 LLKDLEDKYRVSRW----QPPSFKEVAGSFNLDPSELEELLHYLVREGVLVK-INDEFYW 196 (258)
T ss_dssp HHHHHHHHHHHHTT----SCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-SSSSBEE
T ss_pred HHHHHHHHHHHCCC----CCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEE-ecCCeEE
Confidence 44556666654321 1237899999999999999999999999999998 5666663
No 293
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=73.99 E-value=1.8 Score=35.63 Aligned_cols=53 Identities=17% Similarity=0.336 Sum_probs=43.4
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCcc--CHHHHHHHhCCC-HHHHHHHHHHHHhCCeeee
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGV--HVNELSEQLKIP-QKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv--~v~~I~~~l~~~-~~~v~~al~~L~~eG~IYs 268 (280)
.|++-|..+++.|++.. .+.|+ +..+|++.++++ ...|...+..|...|.|-.
T Consensus 3 ~lt~~q~~i~~~i~~~~---~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~~~l~~ 58 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHI---SQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEI 58 (202)
T ss_dssp CCCHHHHHHHHHHHHHH---HHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEE
T ss_pred ccCHHHHHHHHHHHHHH---HHhCCCccHHHHHHHhCCCChHHHHHHHHHHHHCCCcee
Confidence 46778888999888742 34588 999999999998 8999999999998876643
No 294
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=73.57 E-value=3.5 Score=36.71 Aligned_cols=42 Identities=7% Similarity=0.080 Sum_probs=38.0
Q ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCccccccC
Q 023576 236 GVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFAR 279 (280)
Q Consensus 236 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t~ 279 (280)
.+++++|+++++.++.-++..|+.|...|.+-. +++.|..|.
T Consensus 55 ~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~--~~~~y~~t~ 96 (348)
T 3lst_A 55 PRTPAELAAATGTDADALRRVLRLLAVRDVVRE--SDGRFALTD 96 (348)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTEEEECT
T ss_pred CCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe--cCCEEecCH
Confidence 689999999999999999999999999999988 667888663
No 295
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=73.14 E-value=4.6 Score=35.49 Aligned_cols=54 Identities=9% Similarity=0.004 Sum_probs=44.4
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
++-.|++.|.. ..+++++|+++++.++.-++..|+.|...|.+-.+ ++.+|+.|
T Consensus 29 ~~lgi~~~l~~-------~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~-~~~~y~~t 82 (334)
T 2ip2_A 29 TRLGLADLIES-------GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGD-TRDGYANT 82 (334)
T ss_dssp HHTTHHHHHHT-------TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTTEEEEC
T ss_pred HHcCcHHHHhC-------CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEec-CCCeEecC
Confidence 34457787753 26899999999999999999999999999999875 55688765
No 296
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=72.91 E-value=5.2 Score=38.73 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=42.9
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhC-------CCHHHHHHHHHHHHhCCeeee
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLK-------IPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~-------~~~~~v~~al~~L~~eG~IYs 268 (280)
+..+.+|+++++.. .|+++.+|++.|+ .+..-.+++|+.|+.+|.+.-
T Consensus 493 ~~~~~~il~l~~~~------g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG~l~r 547 (566)
T 1w7p_D 493 DVVKEKLVDLIGDN------PGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLI 547 (566)
T ss_dssp HHHHHHHHHHHTTS------TTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHhc------CCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHcCCEEE
Confidence 46788899988652 4999999999999 999999999999999999975
No 297
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=72.77 E-value=2 Score=39.68 Aligned_cols=38 Identities=13% Similarity=0.341 Sum_probs=35.7
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 235 RGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 235 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
.=|+++.|++.|++++++++..|-.|+.+|.|+-.||-
T Consensus 315 srIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq 352 (394)
T 3txn_A 315 SRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQ 352 (394)
T ss_dssp SEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEET
T ss_pred ceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcC
Confidence 35999999999999999999999999999999999985
No 298
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=72.20 E-value=4.4 Score=36.41 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=44.4
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
++-.|++.|... +..+++++|+++++.++..++..|+.|...|.+-. +++.|..|
T Consensus 36 ~~lgifd~L~~~-----~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~--~~~~y~~t 90 (363)
T 3dp7_A 36 LKFGIFQLLSGK-----REGYTLQEISGRTGLTRYAAQVLLEASLTIGTILL--EEDRYVLA 90 (363)
T ss_dssp HHTTHHHHHHTC-----TTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE--ETTEEEEC
T ss_pred HHhCHHHHHHhc-----CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEe--cCCEEecc
Confidence 334477777652 24789999999999999999999999999999855 46788866
No 299
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=72.16 E-value=4 Score=35.74 Aligned_cols=53 Identities=9% Similarity=0.117 Sum_probs=43.5
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
++-.|++.|.. ..+++++|+++++.++.-++..|+.|...|.+-. ++++|+.|
T Consensus 27 ~~l~i~~~l~~-------~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~--~~~~y~~t 79 (335)
T 2r3s_A 27 VELNVFTAISQ-------GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTK--QAEGYRLT 79 (335)
T ss_dssp HHTTHHHHHTT-------SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTEEEEC
T ss_pred HHcChHHHHhc-------CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEe--cCCEEecC
Confidence 34457777753 2689999999999999999999999999999954 56788865
No 300
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=71.89 E-value=6.2 Score=30.18 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=30.9
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIAS 259 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~ 259 (280)
.|++.++.|+. +.- .|.+..+|++.|+++...|+..+..
T Consensus 109 ~L~~~~r~v~~-~~~-------~g~s~~EIA~~lgis~~tV~~~~~r 147 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI-------RGYSYREIATILSKNLKSIDNTIQR 147 (164)
T ss_dssp HSCHHHHHHHH-HHT-------TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH-------cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 57777788877 332 4999999999999999998776654
No 301
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=71.84 E-value=1.9 Score=36.89 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=42.9
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee-cCCC
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS-TIDE 272 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs-TiDd 272 (280)
.+.+..||.+|.. ..+++.+|++.++++...|...|..|.+.|.|-. ..+.
T Consensus 11 ~~~R~~IL~~L~~-------g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~~~~g 62 (232)
T 2qlz_A 11 NKVRRDLLSHLTC-------MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKEE 62 (232)
T ss_dssp SHHHHHHHHHHTT-------TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC
T ss_pred CHHHHHHHHHHHh-------CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeeecC
Confidence 3567789999974 1478889999999999999999999999999988 4443
No 302
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=70.94 E-value=7.1 Score=34.30 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=45.1
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
++-.|++.|.+ ..++.++|+++++.++..++..|+.|...|.+-.+ ++..|..|
T Consensus 26 ~~lglf~~l~~-------g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~-~~~~y~~t 79 (332)
T 3i53_A 26 ATLRVADHIAA-------GHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRD-GQGVYGLT 79 (332)
T ss_dssp HHHTHHHHHHT-------TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-TTSBEEEC
T ss_pred HHcChHHHHhc-------CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEec-CCCeEEcC
Confidence 55568888853 26899999999999999999999999999999876 45678765
No 303
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=70.45 E-value=8.2 Score=31.72 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=40.1
Q ss_pred chhHHHHHHhcCCCCCC---CCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 216 DCDQMILDYLQQPSSSE---RERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~---~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
+...+|..+|....... -..-++.++||+.++++.+.|..+|..|.++|.|-.
T Consensus 163 ~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~ 218 (232)
T 1zyb_A 163 DLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIEL 218 (232)
T ss_dssp SHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEE
T ss_pred CHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEe
Confidence 36667777776542111 012378999999999999999999999999999843
No 304
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=69.73 E-value=8.4 Score=28.21 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=32.1
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSI 257 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al 257 (280)
.|++-++.|+.+---. ...+|.+.++|++.++++...|++.+
T Consensus 19 ~Lp~reR~Vi~Lry~l---~~~e~~s~~EIA~~lgiS~~tVr~~~ 60 (99)
T 3t72_q 19 GLTAREAKVLRMRFGI---DMNTDYTLEEVGKQFDVTRERIRQIE 60 (99)
T ss_pred cCCHHHHHHHHHHHhc---CCCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 5778888888864422 12368999999999999999887654
No 305
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=69.72 E-value=5.7 Score=31.04 Aligned_cols=40 Identities=5% Similarity=0.092 Sum_probs=32.2
Q ss_pred CCCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHH
Q 023576 212 DGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIA 258 (280)
Q Consensus 212 ~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~ 258 (280)
..|++.++.|+.+.. -+|++.+||++.|++++..|+..|.
T Consensus 92 ~~Lp~~~r~vl~L~~-------~~g~s~~EIA~~lgis~~tV~~~l~ 131 (157)
T 2lfw_A 92 ARMTPLSRQALLLTA-------MEGFSPEDAAYLIEVDTSEVETLVT 131 (157)
T ss_dssp TTSCTTHHHHHTTTS-------SSCCCHHHHHHTTTSCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHH-------HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 467888898887643 2599999999999999998876654
No 306
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=69.64 E-value=5.8 Score=32.36 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=29.8
Q ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 237 VHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 237 v~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
++.++||+.++++...|..+|..|.++|.|-.
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~ 195 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISR 195 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEE
Confidence 78999999999999999999999999999843
No 307
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=69.63 E-value=7.7 Score=34.14 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=46.5
Q ss_pred CCCchhHHHHHHhcCCC-CCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 213 GLKDCDQMILDYLQQPS-SSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~-~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.+.+..+.||++|++.+ ...-..=-+-++|.+.|++|-...+.||-.|.-+|.|+.+
T Consensus 221 ~~~~~a~~il~~L~~~~G~l~~~DkS~pe~I~~~f~~SK~~FKrAiG~L~K~~~I~~~ 278 (285)
T 3go5_A 221 MLENDAQMILTYLESNGGFMTLNDKSSPDDIKATFGISKGQFKKALGGLMKAGKIKQD 278 (285)
T ss_dssp CCCHHHHHHHHHHHHTTTEESCCTTSCHHHHHHHHSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred ccchHHHHHHHHHHhcCCeeccCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCcEEEc
Confidence 46778889999998642 2222234578999999999999999999999999999986
No 308
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=69.38 E-value=4 Score=29.49 Aligned_cols=48 Identities=15% Similarity=0.350 Sum_probs=38.0
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
++.+.+||..+... .++++.+|++.++++.+.|...|..|.+. .|-..
T Consensus 26 ~~~Rl~IL~~l~~~------~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~ 73 (99)
T 2zkz_A 26 HPMRLKIVNELYKH------KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRN 73 (99)
T ss_dssp SHHHHHHHHHHHHH------SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEE
T ss_pred CHHHHHHHHHHHHC------CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhhe
Confidence 35667788544331 25899999999999999999999999998 77543
No 309
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=69.15 E-value=6.1 Score=29.75 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=37.5
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHh------CCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQL------KIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l------~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
++-.||.+|... -.+--+|++.+ ++++..|..+|..|..+|.|-+..+
T Consensus 12 l~~~IL~lL~~~-------p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~ 65 (117)
T 4esf_A 12 LEGCVLEIISRR-------ETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKK 65 (117)
T ss_dssp HHHHHHHHHHHS-------CBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHcC-------CCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEee
Confidence 566788888752 24556666665 5899999999999999999988753
No 310
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=68.37 E-value=8.2 Score=34.32 Aligned_cols=53 Identities=6% Similarity=0.084 Sum_probs=43.0
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
++-.|++.|.. ..+++++|+++++.++.-++..|+.|...|.+-.+ +..|+.|
T Consensus 52 ~~lgif~~L~~-------~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~--~~~y~~t 104 (359)
T 1x19_A 52 IELDLFSHMAE-------GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLE--DGKWSLT 104 (359)
T ss_dssp HHHTHHHHHTT-------CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTEEEEC
T ss_pred HHcCcHHHHcC-------CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEee--CCeEecC
Confidence 34456677653 36899999999999999999999999999999775 3488765
No 311
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=68.19 E-value=7.8 Score=32.64 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=35.6
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
.|++-+++||.++. .|.+..+|++.|++++..|+.-+..+.
T Consensus 175 ~Lt~re~~vl~~~~--------~G~s~~eIa~~l~is~~tV~~~~~~~~ 215 (237)
T 3szt_A 175 RLTARETEMLKWTA--------VGKTYGEIGLILSIDQRTVKFHIVNAM 215 (237)
T ss_dssp CCCHHHHHHHHHHH--------TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--------cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 47889999999985 389999999999999999998877664
No 312
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=68.12 E-value=9.8 Score=28.35 Aligned_cols=40 Identities=13% Similarity=0.307 Sum_probs=31.4
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIAS 259 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~ 259 (280)
.|++-++.|+.+.-. .|.+..+||+.+++++..|+..+..
T Consensus 25 ~L~~~~r~vl~l~~~-------~g~s~~EIA~~lgiS~~tV~~~l~r 64 (113)
T 1xsv_A 25 LLTNKQRNYLELFYL-------EDYSLSEIADTFNVSRQAVYDNIRR 64 (113)
T ss_dssp GSCHHHHHHHHHHHT-------SCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-------cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 467778888877543 4899999999999999988766543
No 313
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.66 E-value=2.4 Score=39.59 Aligned_cols=38 Identities=24% Similarity=0.485 Sum_probs=35.6
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 235 RGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 235 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
.=|+++.|++.|++++++++..|..|+.+|.|+-.||-
T Consensus 358 s~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq 395 (445)
T 4b4t_P 358 SRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNR 395 (445)
T ss_dssp EEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEET
T ss_pred ceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 35899999999999999999999999999999999984
No 314
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=67.33 E-value=5.2 Score=33.54 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=44.3
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
.-+-.+|..|..........|+++.+++++|+++.+.|...|..|.+.|.|..+.|
T Consensus 7 ~~~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~~ 62 (230)
T 3cta_A 7 DQYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVT 62 (230)
T ss_dssp CHHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHhcccccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 35556777775543333456899999999999999999999999999999887654
No 315
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=66.71 E-value=9.3 Score=30.87 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=41.8
Q ss_pred EEeeEEEEEEEEEe---eec-CCeeEEEE--E----c--------CCceEEEEEeccc-ccChhhhccCCCCCEEEEEEE
Q 023576 69 EITNVTLVGLVYNK---EER-ASDVNFTL--D----D--------GTGRVVCKRWASE-VFDTREMEAIQDGMYVRLIGN 129 (280)
Q Consensus 69 ~i~~V~iVG~V~~~---~~~-~t~~~~~L--d----D--------gTG~I~~~~w~~~-~~~~~~~~~~~~G~yVrV~G~ 129 (280)
.++.|.|||.+..- ... .....|+| + | .|--+.|..|... ++ .....++.|+.|-|.|+
T Consensus 21 smNkViLiGrLg~DPElR~t~~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE--~~~~yL~KGs~V~VeGr 98 (164)
T 3k81_C 21 SVNSVTLVGVVHDIQSGFVYEDAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSA--EVKQKVKEGNVVCVNGR 98 (164)
T ss_dssp CEEEEEEEEEEECCCCEESSSCEECCEEEEECCC--------CCCCCEEEEEEECCHHHHH--HHHHHCCTTCEEEECCE
T ss_pred CCcEEEEEEEeccCCEEEEcCccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHH--HHHhhcCCCCEEEEEEE
Confidence 38999999999662 111 23334443 2 1 1345999999765 32 22356999999999999
Q ss_pred Eeee
Q 023576 130 LKSF 133 (280)
Q Consensus 130 l~~f 133 (280)
|+.-
T Consensus 99 L~tr 102 (164)
T 3k81_C 99 LRLS 102 (164)
T ss_dssp EEEE
T ss_pred EEee
Confidence 9863
No 316
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=66.63 E-value=5.7 Score=31.24 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=38.2
Q ss_pred hhHHHHH-HhcCCCCCCCC-CccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 217 CDQMILD-YLQQPSSSERE-RGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 217 ~~~~Vl~-~i~~~~~~~~e-~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
+....|+ ++++-. .. .=|+...|+.+|++..+--|.+|.+|.+.|.|=.
T Consensus 45 fDk~tydKL~KEVp---k~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~ 95 (143)
T 2xzm_8 45 IEKKNVESIINNPS---KVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEK 95 (143)
T ss_dssp CCHHHHHHHHTCCT---TSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEE
T ss_pred ecHHHHHHHHHHhc---ccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEE
Confidence 4455555 444432 23 5789999999999999999999999999998843
No 317
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=65.45 E-value=25 Score=30.38 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=51.1
Q ss_pred EEEeeEEEEEEEEEeeec--C----CeeEEEEEcC-------Cc-eEEEEEec-ccccChhhhccCCCCCEEEEEEEEee
Q 023576 68 LEITNVTLVGLVYNKEER--A----SDVNFTLDDG-------TG-RVVCKRWA-SEVFDTREMEAIQDGMYVRLIGNLKS 132 (280)
Q Consensus 68 ~~i~~V~iVG~V~~~~~~--~----t~~~~~LdDg-------TG-~I~~~~w~-~~~~~~~~~~~~~~G~yVrV~G~l~~ 132 (280)
+-++.|.|+|.+..-+.+ . ..++|.++-. +. -|.|+.|- ..++ .....++.|+.|-|.|+|+.
T Consensus 28 r~~N~viLiGrLtrdElRyT~~g~~a~~~lav~~~~~~~ge~~~df~~vv~wg~k~AE--~~~~yl~kG~~V~VeGrL~~ 105 (257)
T 4dni_A 28 RCVNHCVMLGVVQNIQEGFVFEDKVLQFTLITDFEGPSPGDPDKDFHTVRVFDSDYSS--RVKEQLRDGEWFLVTGRLRM 105 (257)
T ss_dssp CCSEEEEEEEEEEEEEEEEETTEEEEEEEEEEECCCCCSSCCCEEEEEEEECSHHHHH--HHHHHCCTTCEEEEEEEEEE
T ss_pred hcCcEEEEEEEEeceEEEECCCCCEEEEEEEEEecCCCCCCCcccEEEEEEECCHHHH--HHHHhccCCCEEEEEEEEEE
Confidence 347899999999765321 1 2234444322 22 46777998 5432 22356999999999999999
Q ss_pred eCC-------eeEEEEEEEeeCC
Q 023576 133 FQG-------KKQIVAFSVRPVT 148 (280)
Q Consensus 133 f~~-------~~~i~~~~ir~v~ 148 (280)
|.. .-.+.+..+.|+.
T Consensus 106 ~~~~dG~kr~~~evva~~v~~~~ 128 (257)
T 4dni_A 106 VPQYDGSMRKYYHYPVIQVHPGC 128 (257)
T ss_dssp EEEECSSSSSEEEEEEEEECTTT
T ss_pred eECCCCCcEEEEEEEEEEEEecC
Confidence 742 1357778888854
No 318
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=65.16 E-value=8.8 Score=34.15 Aligned_cols=54 Identities=9% Similarity=0.124 Sum_probs=43.2
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCc--ccccc
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEF--HYKFA 278 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~--hfk~t 278 (280)
++..|++.|.. ..+++++|+++++.++.-++..|+.|...|.+-.+ ++. +|..|
T Consensus 37 ~~l~i~~~l~~-------~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~-~~~~~~y~~t 92 (374)
T 1qzz_A 37 ATLRLVDHLLA-------GADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGG-EKQGRPLRPT 92 (374)
T ss_dssp HHTTHHHHHHT-------TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECC-CC-CCCCEEC
T ss_pred HHcChHHHHhC-------CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEe-CCCCeEEEEC
Confidence 44567888853 25899999999999999999999999999999774 444 78765
No 319
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=65.10 E-value=11 Score=31.49 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=34.7
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
.|++-+++||.++. +|.+..||++.|++++..|+.-+..+.
T Consensus 173 ~Lt~~e~~vl~~~~--------~g~s~~eIa~~l~is~~tV~~~~~~~~ 213 (234)
T 1l3l_A 173 WLDPKEATYLRWIA--------VGKTMEEIADVEGVKYNSVRVKLREAM 213 (234)
T ss_dssp CCCHHHHHHHHHHT--------TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47889999999863 389999999999999999988776553
No 320
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=64.80 E-value=8.8 Score=35.26 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=42.8
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
++..+..||++|.. ..+++++|+++.+++..+|..+|-+|.=.|.|-..
T Consensus 326 l~~~~~~vl~~l~~-------~~~~~D~l~~~~gl~~~~v~~~L~~LEl~G~v~~~ 374 (382)
T 3maj_A 326 DTGDRTRILALLGP-------SPVGIDDLIRLSGISPAVVRTILLELELAGRLERH 374 (382)
T ss_dssp CTTHHHHHHHHCCS-------SCEEHHHHHHHHCCCHHHHHHHHHHHHHTTCCEEC
T ss_pred CChHHHHHHHhhCC-------CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEeC
Confidence 56667889999853 36899999999999999999999999999999764
No 321
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=64.79 E-value=9 Score=28.62 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=29.3
Q ss_pred HHHHHhcCCCCCCCCCccCHHHHHHHh-CCCHHHHHHHHHHHHh
Q 023576 220 MILDYLQQPSSSERERGVHVNELSEQL-KIPQKKIMDSIASLEN 262 (280)
Q Consensus 220 ~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-~~~~~~v~~al~~L~~ 262 (280)
.|++.++. |.+.++|++.+ .++.++|..||.+-..
T Consensus 56 ~Il~~l~~--------G~s~eeIl~~yP~Lt~edI~aAL~Ya~~ 91 (106)
T 2ga1_A 56 TLVAYRQQ--------GAPDKELLANYPGLTAEDLSAAWHYYEQ 91 (106)
T ss_dssp HHHHHHHT--------TCCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHc--------CCCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 46677753 89999999999 7999999999988543
No 322
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=64.49 E-value=6.6 Score=31.35 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=30.3
Q ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 236 GVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 236 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
-++.++||+.++++...|..++..|.++|.|-.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 196 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHV 196 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 368899999999999999999999999999843
No 323
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=64.26 E-value=4.7 Score=30.29 Aligned_cols=49 Identities=27% Similarity=0.271 Sum_probs=38.7
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHh------CCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQL------KIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l------~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
.++-.||.+|... -.+--+|++.+ .++...|..+|..|..+|.|-+..+
T Consensus 9 ~l~~~IL~~L~~~-------~~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~ 63 (115)
T 4esb_A 9 VLEGCILYIISQE-------EVYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLK 63 (115)
T ss_dssp THHHHHHHHHHHS-------CEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHcC-------CCCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEee
Confidence 3777899999752 24666676666 3899999999999999999988753
No 324
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=64.17 E-value=6.9 Score=31.33 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=30.3
Q ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 236 GVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 236 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
-++.++||+.++++.+.|..+|..|.++|.|-.
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~ 199 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLISA 199 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe
Confidence 368899999999999999999999999999854
No 325
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=64.14 E-value=11 Score=31.61 Aligned_cols=41 Identities=10% Similarity=0.136 Sum_probs=34.5
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
.|++-+++||.++. +|.+..||++.|++++..|+.-+..+.
T Consensus 175 ~Lt~~e~~vl~~~~--------~g~s~~eIa~~l~is~~tV~~~~~~~~ 215 (236)
T 2q0o_A 175 MLSPREMLCLVWAS--------KGKTASVTANLTGINARTVQHYLDKAR 215 (236)
T ss_dssp SCCHHHHHHHHHHH--------TTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47889999999874 389999999999999999988776553
No 326
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=64.06 E-value=6.7 Score=31.54 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=31.2
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 235 RGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 235 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
.-++.++||+.++++...|..++..|.++|.|-.
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 195 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEGVVRL 195 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 4579999999999999999999999999999943
No 327
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=63.70 E-value=8 Score=34.28 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=43.3
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
.+..|++.|.. ..+++++|+++++.++.-++..|..|...|.+-.. ++..|..|
T Consensus 40 ~~l~i~~~l~~-------~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~-~~g~y~~t 93 (360)
T 1tw3_A 40 ATLRLVDHILA-------GARTVKALAARTDTRPEALLRLIRHLVAIGLLEED-APGEFVPT 93 (360)
T ss_dssp HHTTHHHHHHT-------TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-ETTEEEEC
T ss_pred HHhCHHHHHhC-------CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEec-CCCeEEeC
Confidence 34457777743 24799999999999999999999999999999775 34577765
No 328
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=63.47 E-value=7.2 Score=31.21 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=29.9
Q ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 237 VHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 237 v~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
++.++||+.++++...|..+|..|.++|.|-.
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 178 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIRS 178 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 68899999999999999999999999999853
No 329
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=63.45 E-value=4.2 Score=32.35 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=28.9
Q ss_pred HHHHHHHhC--------------CCHHHHHHHHHHHHhCCeeeec
Q 023576 239 VNELSEQLK--------------IPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 239 v~~I~~~l~--------------~~~~~v~~al~~L~~eG~IYsT 269 (280)
..++++.++ .+..-||+||+.|..+|.|...
T Consensus 70 ~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~ 114 (150)
T 2v7f_A 70 IERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKV 114 (150)
T ss_dssp HHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEe
Confidence 399999999 9999999999999999999875
No 330
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.26 E-value=3.5 Score=38.20 Aligned_cols=38 Identities=5% Similarity=0.197 Sum_probs=35.8
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 235 RGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 235 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
.=|+++.|++.|+++++++++.|..|+.+|.|.-.||-
T Consensus 346 s~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~ 383 (429)
T 4b4t_R 346 KTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDR 383 (429)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEET
T ss_pred ceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcC
Confidence 46899999999999999999999999999999999986
No 331
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=62.73 E-value=7.5 Score=31.35 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=30.2
Q ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 236 GVHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 236 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
-++.++||+.++++.+.|..++..|.++|.|=
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 200 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVK 200 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 57899999999999999999999999999993
No 332
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=62.37 E-value=11 Score=29.91 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=30.4
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIAS 259 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~ 259 (280)
.|++.++.|+.+..- +|.+..+|++.+++++..|+..+..
T Consensus 140 ~L~~~~r~vl~l~~~-------~g~s~~EIA~~lgis~~tV~~~l~r 179 (194)
T 1or7_A 140 SLPEDLRMAITLREL-------DGLSYEEIAAIMDCPVGTVRSRIFR 179 (194)
T ss_dssp HSCHHHHHHHHHHHT-------TCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHH-------cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 466667777765332 4899999999999999998876653
No 333
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=62.00 E-value=11 Score=28.05 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=31.6
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIAS 259 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~ 259 (280)
.|++-++.|+.+.-. .|.+..+||+.+++++..|+..+..
T Consensus 22 ~L~~~~r~vl~l~y~-------~g~s~~EIA~~lgiS~~tV~~~l~r 61 (113)
T 1s7o_A 22 LLTDKQMNYIELYYA-------DDYSLAEIADEFGVSRQAVYDNIKR 61 (113)
T ss_dssp GSCHHHHHHHHHHHH-------TCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-------cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 467788888876532 3899999999999999988776654
No 334
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=61.92 E-value=7.8 Score=31.48 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=30.0
Q ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 237 VHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 237 v~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
++.++||+.++++.+.|..+|..|.++|.|-.
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 219 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLHA 219 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 68999999999999999999999999999854
No 335
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=61.89 E-value=12 Score=24.04 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=29.4
Q ss_pred HHHHhcCCCCCCCCCccCHHHHHHHh-----CCCHHHHHHHHHHHHhCCee
Q 023576 221 ILDYLQQPSSSERERGVHVNELSEQL-----KIPQKKIMDSIASLENEGLI 266 (280)
Q Consensus 221 Vl~~i~~~~~~~~e~Gv~v~~I~~~l-----~~~~~~v~~al~~L~~eG~I 266 (280)
|+.++++. ..+++++|++.| +++...|...|++| |.|
T Consensus 10 i~~ll~~~------~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l---g~v 51 (64)
T 2p5k_A 10 IREIITSN------EIETQDELVDMLKQDGYKVTQATVSRDIKEL---HLV 51 (64)
T ss_dssp HHHHHHHS------CCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH---TCE
T ss_pred HHHHHHcC------CCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc---CCE
Confidence 55666542 368999999999 89999999999955 556
No 336
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=61.57 E-value=8 Score=31.57 Aligned_cols=39 Identities=5% Similarity=0.118 Sum_probs=32.9
Q ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccc
Q 023576 236 GVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYK 276 (280)
Q Consensus 236 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk 276 (280)
-++.++||+.++++...|..+|..|.++|.|=. +..++.
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~--~~~~i~ 213 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEV--SPRSVT 213 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--CSSCEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe--cCCEEE
Confidence 468999999999999999999999999999943 344444
No 337
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=61.56 E-value=12 Score=29.34 Aligned_cols=49 Identities=27% Similarity=0.339 Sum_probs=40.1
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHh--------CCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQL--------KIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l--------~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
.++-.||.+|.+ ..++.-+|++.+ .++...|..+|..|.++|.|-...+
T Consensus 41 ~~~~~IL~~L~~-------~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~ 97 (145)
T 1xma_A 41 YVDTIILSLLIE-------GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYG 97 (145)
T ss_dssp THHHHHHHHHHH-------CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cHHHHHHHHHHh-------CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEe
Confidence 478889999964 136777777776 5999999999999999999988754
No 338
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=60.71 E-value=52 Score=24.91 Aligned_cols=64 Identities=9% Similarity=0.222 Sum_probs=45.4
Q ss_pred CCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEEE-EeeeC-CeeEEEEEEEeeCCC
Q 023576 86 ASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGN-LKSFQ-GKKQIVAFSVRPVTN 149 (280)
Q Consensus 86 ~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~-l~~f~-~~~~i~~~~ir~v~d 149 (280)
..+.++.|.||.=.+.+-+......+.-....++.|+.|||.=- +...+ +++-|.+..+..+..
T Consensus 42 ~~RyRl~lSDG~~~~~~~mLatqln~~v~~g~l~~~sIirl~~y~~~~v~~~k~vliIl~levl~~ 107 (123)
T 2b29_A 42 PPRYRLLMSDGLNTLSSFMLATQLNPLVEEEQLSSNCVCQIHRFIVNTLKDGRRVVILMELEVLKS 107 (123)
T ss_dssp CCEEEEEEECSSEEEEEEEECGGGHHHHHTTSSCTTCEEEEEEEEEEECSSSCEEEEEEEEEEEEC
T ss_pred CceEEEEEECcchheeeehhHHHHHHHHhcCCccCCCEEEEEEEEEEEecCCcEEEEEEeeEEeec
Confidence 46889999999999998555433222222356999999999543 34446 888888888877755
No 339
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=60.71 E-value=6.5 Score=31.37 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=29.4
Q ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 237 VHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 237 v~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
++.++||+.++++.+.|..+|..|.++|.|=
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 170 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGLIA 170 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 6889999999999999999999999999984
No 340
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=60.30 E-value=1.8 Score=42.08 Aligned_cols=48 Identities=8% Similarity=0.171 Sum_probs=0.0
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
..++.|+++|++.+ .++..+|++.++++..+++.+|..|+++|.|-.+
T Consensus 516 ~~~~~I~~~l~~~g------~it~~di~~l~~ls~~qa~~~L~~Lv~~G~l~~~ 563 (583)
T 3lmm_A 516 ELTNAAMLWLSEVG------DLATSDLMAMCGVSRGTAKACVDGLVDEERVVAV 563 (583)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHcC------CcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe
Confidence 35578999999752 5899999999999999999999999999998543
No 341
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=59.87 E-value=8.8 Score=31.33 Aligned_cols=34 Identities=9% Similarity=0.149 Sum_probs=31.2
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 235 RGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 235 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
.-++.++||+.++++.+.|..+|..|.++|.|-.
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 212 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLAL 212 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee
Confidence 4578999999999999999999999999999854
No 342
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=59.84 E-value=8.8 Score=31.86 Aligned_cols=33 Identities=9% Similarity=0.192 Sum_probs=30.6
Q ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 236 GVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 236 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
-++.++||+.++++...|..+|..|.++|.|-.
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~ 225 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMISI 225 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEE
Confidence 468899999999999999999999999999854
No 343
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=59.71 E-value=9 Score=34.37 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=36.9
Q ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcc-cccc
Q 023576 236 GVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFH-YKFA 278 (280)
Q Consensus 236 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~h-fk~t 278 (280)
.+++++|+++++.++.-++..|+.|...|.+-.+ +++. |+.|
T Consensus 71 ~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~-~~~~~y~~t 113 (369)
T 3gwz_A 71 PRTATALAEATGAHEQTLRRLLRLLATVGVFDDL-GHDDLFAQN 113 (369)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEC-SSTTEEECC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEe-CCCceEecC
Confidence 6899999999999999999999999999999876 3446 8765
No 344
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=59.51 E-value=14 Score=31.37 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=38.1
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
....|+-.|.. .+.+..+|+..++++++.|...|..|.+.|.|=..
T Consensus 166 ~~~~l~~~l~~-------~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~ 211 (232)
T 2qlz_A 166 QLAILHYLLLN-------GRATVEELSDRLNLKEREVREKISEMARFVPVKII 211 (232)
T ss_dssp HHHHHHHHHHS-------SEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHHHhc-------CCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEe
Confidence 55556666553 37899999999999999999999999999999543
No 345
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=59.49 E-value=11 Score=32.89 Aligned_cols=55 Identities=22% Similarity=0.334 Sum_probs=42.9
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHH-HHHhCCeeeecCC
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIA-SLENEGLIYSTID 271 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~-~L~~eG~IYsTiD 271 (280)
.+..+.++++..+... ....+++.++++.++++...+...++ +|.+.|.|+.+-.
T Consensus 260 ~l~~~e~~~l~~l~~~----~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~ 315 (338)
T 3pfi_A 260 GFDAMDLRYLELLTAA----KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAK 315 (338)
T ss_dssp CCCHHHHHHHHHHHHS----CSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETT
T ss_pred CCCHHHHHHHHHHHHh----cCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCC
Confidence 4566656666655442 23467899999999999999999999 9999999998743
No 346
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=59.40 E-value=9.4 Score=31.25 Aligned_cols=39 Identities=10% Similarity=0.260 Sum_probs=32.0
Q ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 237 VHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 237 v~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
++.++||+.++++...|..+|..|.++| | . .+..++...
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i-~-~~~~~i~I~ 217 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAAG-V-T-VKRNHAEIE 217 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGGT-E-E-CCTTEEEES
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCC-e-E-eeCCEEEEc
Confidence 4578999999999999999999999999 5 3 455555543
No 347
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=59.32 E-value=9.1 Score=30.99 Aligned_cols=33 Identities=12% Similarity=0.312 Sum_probs=30.6
Q ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 236 GVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 236 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
-++.++||+.++++...|..++..|.++|.|-.
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 578999999999999999999999999999854
No 348
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=58.57 E-value=14 Score=26.90 Aligned_cols=43 Identities=16% Similarity=0.300 Sum_probs=34.8
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCee
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLI 266 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~I 266 (280)
+.+..|+.++. .|.++.+|++.|+++...|..-+......|.+
T Consensus 21 ~~r~~i~~~~~--------~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~ 63 (128)
T 1pdn_C 21 NIRLKIVEMAA--------DGIRPCVISRQLRVSHGCVSKILNRYQETGSI 63 (128)
T ss_dssp HHHHHHHHHHH--------TTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCc
Confidence 35666777664 37899999999999999999999988777743
No 349
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=58.57 E-value=9.5 Score=30.99 Aligned_cols=33 Identities=12% Similarity=0.300 Sum_probs=30.4
Q ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 236 GVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 236 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
-++.++||+.++++...|..+|..|.++|.|-.
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 209 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRL 209 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe
Confidence 478999999999999999999999999999854
No 350
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=58.46 E-value=7.9 Score=28.13 Aligned_cols=36 Identities=8% Similarity=0.219 Sum_probs=29.7
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHH
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIAS 259 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~ 259 (280)
-+..|+++|... ++++.+|++.++++...|+.+|..
T Consensus 8 R~~~I~~~l~~~-------~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 8 RTIKIGKYIVET-------KKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHHHH-------CCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-------CCCHHHHHHHHCCCHHHHHHHHcC
Confidence 456788888753 489999999999999999988753
No 351
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=57.93 E-value=30 Score=30.20 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=38.7
Q ss_pred eeEEEEEEEEEeee-cCCeeEEEEEcCCce----------------------------EEEEEecccccChhhhccCCCC
Q 023576 71 TNVTLVGLVYNKEE-RASDVNFTLDDGTGR----------------------------VVCKRWASEVFDTREMEAIQDG 121 (280)
Q Consensus 71 ~~V~iVG~V~~~~~-~~t~~~~~LdDgTG~----------------------------I~~~~w~~~~~~~~~~~~~~~G 121 (280)
..+-||++|+.+.. ....+.+.+-|+|+. +++..|.+.. .....+++|
T Consensus 155 ~f~DLv~qVv~v~~~~~~~~~LyVwDgT~~~~~~~~~~~~~~~~~gd~~~~~~~~~lt~~V~~~d~h~---~~~~~lk~G 231 (294)
T 1xjv_A 155 QYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHV---HVARSLKVG 231 (294)
T ss_dssp CEEEEEEEEEEEEECSSSEEEEEEECSSCCSSCBCCCCCCSSCCEECHHHHHHHGGGSEEEEEETTHH---HHHHHCCTT
T ss_pred CeeeEEEEEEEEEecCCCeEEEEEECCCCCCCCccccccccccccCcccccccccCeeEEEEEEcchh---HHHhcCCCC
Confidence 45788899987643 346678889998862 4556676432 123579999
Q ss_pred CEEEEEEE
Q 023576 122 MYVRLIGN 129 (280)
Q Consensus 122 ~yVrV~G~ 129 (280)
++|++..-
T Consensus 232 d~V~l~Nv 239 (294)
T 1xjv_A 232 SFLRIYSL 239 (294)
T ss_dssp CEEEEEEE
T ss_pred cEEEEeee
Confidence 99998753
No 352
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=57.85 E-value=14 Score=27.28 Aligned_cols=38 Identities=13% Similarity=0.283 Sum_probs=32.2
Q ss_pred HHHHHHHh-C-CCHHHHHHHHHHHHhCCeeeecCCCcccc
Q 023576 239 VNELSEQL-K-IPQKKIMDSIASLENEGLIYSTIDEFHYK 276 (280)
Q Consensus 239 v~~I~~~l-~-~~~~~v~~al~~L~~eG~IYsTiDd~hfk 276 (280)
|+.+.+.+ + .+..+-....+.|+++|.|+-+.++.+|+
T Consensus 57 VdWL~~~~~~~~~r~eAv~lg~~Ll~~G~I~hv~~~~~F~ 96 (105)
T 1fsh_A 57 VDWLYTHVEGFKERREARKYASSMLKHGFLRHTVNKITFS 96 (105)
T ss_dssp HHHHHHHCCCCSSHHHHHHHHHHHHHTTTEECSSSSCCCC
T ss_pred HHHHHHhCcCCCCHHHHHHHHHHHHHCCcEEEcCCCCccc
Confidence 56667777 4 67888888899999999999999998887
No 353
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=57.63 E-value=10 Score=30.50 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=26.6
Q ss_pred CCccCHHHHHHHhC--CCHHHHHHHHHHHHh
Q 023576 234 ERGVHVNELSEQLK--IPQKKIMDSIASLEN 262 (280)
Q Consensus 234 e~Gv~v~~I~~~l~--~~~~~v~~al~~L~~ 262 (280)
++++++++|++.++ .+.++|+++|+.|..
T Consensus 20 ~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~ 50 (162)
T 1t6s_A 20 EEPVNLQTLSQITAHKFTPSELQEAVDELNR 50 (162)
T ss_dssp SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCcCCCHHHHHHHHHHHHH
Confidence 45899999999998 999999999999975
No 354
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=57.21 E-value=15 Score=29.88 Aligned_cols=40 Identities=10% Similarity=0.249 Sum_probs=31.7
Q ss_pred CCCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHH
Q 023576 212 DGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIA 258 (280)
Q Consensus 212 ~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~ 258 (280)
..|++.++.|+.+.-- +|.+..+|++.|++++..|+..+.
T Consensus 186 ~~L~~~~r~vl~l~~~-------~g~s~~EIA~~lgis~~~V~~~~~ 225 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFY-------EELPAKEVAKILETSVSRVSQLKA 225 (239)
T ss_dssp TTSCHHHHHHHHHHHT-------SCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHh-------cCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3577888888876432 489999999999999999886653
No 355
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=56.48 E-value=13 Score=22.42 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=26.1
Q ss_pred hHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHH
Q 023576 218 DQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIAS 259 (280)
Q Consensus 218 ~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~ 259 (280)
...|+.++. .|.++.+|++.++++...|...+..
T Consensus 11 ~~~i~~l~~--------~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 11 QEQISRLLE--------KGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHHHHH--------TTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHHHHH--------cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 356666654 2689999999999999998876643
No 356
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=56.48 E-value=17 Score=31.25 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=35.2
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
.|++-+.+||..+. +|.+..||++.|++++..|+.-+..+.
T Consensus 197 ~Lt~re~~vl~~~~--------~G~s~~eIA~~l~is~~TV~~~~~~~~ 237 (265)
T 3qp6_A 197 PLSQREYDIFHWMS--------RGKTNWEIATILNISERTVKFHVANVI 237 (265)
T ss_dssp CCCHHHHHHHHHHH--------TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47889999999984 389999999999999999988777654
No 357
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.48 E-value=5.3 Score=35.44 Aligned_cols=38 Identities=11% Similarity=0.378 Sum_probs=35.2
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 235 RGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 235 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
.=++++.|++.|++++++++..|..|+.+|.|+-.||.
T Consensus 355 ~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~ 392 (434)
T 4b4t_Q 355 ECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQ 392 (434)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEET
T ss_pred HhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceeccc
Confidence 35799999999999999999999999999999998885
No 358
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=56.42 E-value=37 Score=27.36 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=46.0
Q ss_pred CCCceeeeeHHHHhhcccCCCCCCCeEECCEEEeeEEEEEEEEEe-ee-cCCeeEEEEEcCCce-EEEEEecccccChhh
Q 023576 38 DSQGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNK-EE-RASDVNFTLDDGTGR-VVCKRWASEVFDTRE 114 (280)
Q Consensus 38 ~~~~~~PvtIkqi~~a~~~~~~~~~~~i~g~~i~~V~iVG~V~~~-~~-~~t~~~~~LdDgTG~-I~~~~w~~~~~~~~~ 114 (280)
...++.+++++.|....- .-+.++|.|+.. .. ..--+.|.+.|..|. .-+.+|.-.+
T Consensus 57 ~~~~l~~~~l~~L~~G~N---------------~g~vv~gKVv~~i~~e~~vP~~f~~vD~~g~c~avsVYNl~~----- 116 (166)
T 2xvs_A 57 QKVTLELKPLSTLQPGVN---------------SGAVILGKVVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNIVQ----- 116 (166)
T ss_dssp CEECCEECCGGGCCSEEC---------------TTEEEEEEEEEEECCTTCCSEEEEEESSSSCCEEEEECCCCS-----
T ss_pred CcceeeeeeHHHcccccC---------------CCcEEEEEEEEEecCCCCCceEEEEECCCCCEEEEEEEeccC-----
Confidence 467899999999977642 235667777664 32 335779999999996 5555664332
Q ss_pred hccCCCCCEEEE
Q 023576 115 MEAIQDGMYVRL 126 (280)
Q Consensus 115 ~~~~~~G~yVrV 126 (280)
-..+.+||.|-|
T Consensus 117 ~~G~~iGDsV~I 128 (166)
T 2xvs_A 117 SWGVLIGDSVAI 128 (166)
T ss_dssp SCCCCTTCEEEE
T ss_pred CcceEecCEEEe
Confidence 234777887765
No 359
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=56.31 E-value=17 Score=30.77 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=34.4
Q ss_pred CCCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHH
Q 023576 212 DGLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASL 260 (280)
Q Consensus 212 ~~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L 260 (280)
..|++-+++|+.++ . +|.+.+|||+.|++++..|+..+...
T Consensus 196 ~~L~~~erevl~L~-~-------~G~s~~EIA~~L~iS~~TVk~~l~ra 236 (258)
T 3clo_A 196 NILSEREKEILRCI-R-------KGLSSKEIAATLYISVNTVNRHRQNI 236 (258)
T ss_dssp TSSCHHHHHHHHHH-H-------TTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH-H-------cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 46888999999986 2 38999999999999999988776554
No 360
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=56.26 E-value=11 Score=31.75 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=30.2
Q ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 236 GVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 236 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
-++.++||+.++++...|..+|..|.++|.|-.
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~ 249 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISA 249 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 357899999999999999999999999999854
No 361
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=56.21 E-value=5.8 Score=29.77 Aligned_cols=35 Identities=34% Similarity=0.362 Sum_probs=31.6
Q ss_pred CCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 234 ERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 234 e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
..=|+...|+++|++..+=-|.+|.+|.+.|.|=.
T Consensus 57 ~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~ 91 (108)
T 3u5c_Z 57 YRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKP 91 (108)
T ss_dssp CSSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEE
T ss_pred CeEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEE
Confidence 45789999999999999999999999999998854
No 362
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=56.15 E-value=11 Score=31.28 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=30.5
Q ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 236 GVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 236 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
-++.++||..++++...|..+|..|.++|.|=.
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~ 209 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDK 209 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEe
Confidence 468999999999999999999999999999843
No 363
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=55.93 E-value=18 Score=29.48 Aligned_cols=41 Identities=20% Similarity=0.494 Sum_probs=34.2
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
.|++-+.+||.+|.+ |++.++|++.+++++..|+.-+..|.
T Consensus 149 ~LT~rE~~vL~~l~~--------g~s~~eIa~~l~is~~TV~~hi~~l~ 189 (225)
T 3c3w_A 149 GLTDQERTLLGLLSE--------GLTNKQIADRMFLAEKTVKNYVSRLL 189 (225)
T ss_dssp TSCHHHHHHHHHHHT--------TCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC--------CCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 478888999999864 68999999999999998877776654
No 364
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=55.89 E-value=8.7 Score=26.46 Aligned_cols=51 Identities=14% Similarity=0.259 Sum_probs=40.0
Q ss_pred CCch-hHHHHHHhcCCCCCCCCCccCHHHHHHHhC-CCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 214 LKDC-DQMILDYLQQPSSSERERGVHVNELSEQLK-IPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 214 l~~~-~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~-~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
|+.. +++|+.+|+..+ .-..-.|++.|| -+..+|+-.|-.|...+.+ .+ |+
T Consensus 7 ls~~~ee~I~~fL~~~G------p~~AL~IAK~LGlktAK~VNp~LY~m~~~~lL-~~-De 59 (72)
T 3eyi_A 7 FSQQREEDIYRFLKDNG------PQRALVIAQALGMRTAKDVNRDLYRMKSRHLL-DM-DE 59 (72)
T ss_dssp CSSHHHHHHHHHHHHHC------SEEHHHHHHHTTCCSGGGTHHHHHHHHHTTSE-EE-CT
T ss_pred hhhhhHHHHHHHHHHcC------CchHHHHHHHhCcchhhhcCHHHHHHHHccCc-CC-CC
Confidence 4455 677999999753 346678999998 5666799999999999999 44 76
No 365
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=55.87 E-value=7.9 Score=31.37 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=30.8
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 235 RGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 235 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
.-++.++||+.++++...|..++..|.++|.|-.
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 210 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHL 210 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEe
Confidence 3568899999999999999999999999999943
No 366
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=55.41 E-value=12 Score=23.48 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=20.9
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHH
Q 023576 235 RGVHVNELSEQLKIPQKKIMDSIA 258 (280)
Q Consensus 235 ~Gv~v~~I~~~l~~~~~~v~~al~ 258 (280)
.|.+..+|++.++++...|...+.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 388999999999999999987653
No 367
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=54.87 E-value=12 Score=28.04 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=36.2
Q ss_pred chhHH-HHHHhcCCCCCCCCCccCHHHHHHH----hCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 216 DCDQM-ILDYLQQPSSSERERGVHVNELSEQ----LKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 216 ~~~~~-Vl~~i~~~~~~~~e~Gv~v~~I~~~----l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
.+.-. ||.+|.+. +-.|..+...++. ++++...|..+|..|.++|.|-+..+
T Consensus 21 ~l~~~~IL~lL~~~----~~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe~~GlI~~~~~ 77 (115)
T 2dql_A 21 EVAICYILYVLLQG----ESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWK 77 (115)
T ss_dssp HHHHHHHHHHHTTS----CBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHHHHHHHHHHhC----CCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHCCCEEEEee
Confidence 35545 89999753 2345544333322 25899999999999999999988743
No 368
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=54.56 E-value=18 Score=30.51 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=34.3
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
..+..-||+.|.+ ..-++++++++.++.+.++|+++|..|-
T Consensus 21 ~~~~~~llr~la~------Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 21 ADLLVPLLRELAK------GRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp HHHHHHHHHHHTT------TSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHhc------CCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 3466778887763 3578999999999999999999999996
No 369
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=54.49 E-value=11 Score=36.54 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=39.9
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHh-----CCeeee
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLEN-----EGLIYS 268 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~-----eG~IYs 268 (280)
+..+..||.+|++. .-++..+|++.+++++.+++.+|..|.+ .|.|-.
T Consensus 429 ~~~~~~iL~~l~~~------~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~ 481 (583)
T 3lmm_A 429 DYRIAIVLYLLFQR------PFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIA 481 (583)
T ss_dssp CHHHHHHHHHHHHS------SSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEE
T ss_pred chhHHHHHHHHHHC------CCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEE
Confidence 33456799998874 3689999999999999999999999999 566655
No 370
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=53.66 E-value=18 Score=28.52 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=37.6
Q ss_pred HHHHHhcCCCCCCCCCccCHHHHHHHh-------CCCHHHHHHHHHHHHhCCeeeecCCCc--------cccccC
Q 023576 220 MILDYLQQPSSSERERGVHVNELSEQL-------KIPQKKIMDSIASLENEGLIYSTIDEF--------HYKFAR 279 (280)
Q Consensus 220 ~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-------~~~~~~v~~al~~L~~eG~IYsTiDd~--------hfk~t~ 279 (280)
.||.+|.+. -.+--+|++.+ +++...|..+|..|.++|.|-+..++. .|+.|+
T Consensus 48 ~IL~lL~~~-------p~~GYeI~k~l~~~~~~~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~ 115 (148)
T 2zfw_A 48 YVLAVLRHE-------DSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQ 115 (148)
T ss_dssp HHHHHHTTC-------CEEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESS
T ss_pred HHHHHHHhC-------CCcHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECH
Confidence 478888652 23444554444 489999999999999999998875431 377765
No 371
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=53.63 E-value=18 Score=25.79 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=29.5
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHH
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASL 260 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L 260 (280)
+-++|.++|.+.- .+.-+++++|++.+++++..+...+...
T Consensus 3 ~~~~i~~~i~~~~---~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESY---TDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHT---TCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc---cCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4567788887652 2336899999999988888777665544
No 372
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=53.60 E-value=9.8 Score=33.85 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=44.3
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCC---CHHHHHHHHHHHHhCCeeeecC------C---Ccccccc
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKI---PQKKIMDSIASLENEGLIYSTI------D---EFHYKFA 278 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~---~~~~v~~al~~L~~eG~IYsTi------D---d~hfk~t 278 (280)
++-.|++.|... ...+++++|+++++. .+.-++..|+.|...|.+-... | +++|+.|
T Consensus 31 ~~lgif~~L~~~-----~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t 99 (358)
T 1zg3_A 31 MELGIADAIHNH-----GKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLT 99 (358)
T ss_dssp HHHTHHHHHHHH-----TSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEEC
T ss_pred HHCChHhHHhhc-----CCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEecccccccCCCCCCEEeCC
Confidence 455678888642 125899999999998 5888999999999999998762 2 4678765
No 373
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=53.57 E-value=12 Score=29.74 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=40.9
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHh---CCCHHHHHHHHHHHHhCCeeeecCCCcccc
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQL---KIPQKKIMDSIASLENEGLIYSTIDEFHYK 276 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l---~~~~~~v~~al~~L~~eG~IYsTiDd~hfk 276 (280)
...+....|.+|..- --+..+|.++| +++++.|..+|++|.+.|.| ||.-|.
T Consensus 16 ~~~a~~~Al~~Ls~r-------~~s~~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~l----dD~rfA 70 (162)
T 3dfg_A 16 EQTPVQRALGLLVHR-------EHSKKELNRKLQARGIEPEAAQAAVERLAGEGWQ----DDVRFA 70 (162)
T ss_dssp -CCHHHHHHHHHHHS-------CCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSC----CHHHHH
T ss_pred HHHHHHHHHHHhhch-------hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC----CHHHHH
Confidence 345777888888752 34788999998 59999999999999999986 665553
No 374
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=53.37 E-value=14 Score=32.59 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=36.5
Q ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 236 GVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 236 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
.+++++|+++++.++.-++..|+.|...|.+-.+ ++.|..|
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~--~~~y~~t 96 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALGLLTKE--GDAFRNT 96 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTEEEEC
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEec--CCeeecC
Confidence 7899999999999999999999999999998774 3577755
No 375
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=53.10 E-value=21 Score=28.58 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=34.6
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHh
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLEN 262 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~ 262 (280)
.|++-..+||.+|.+ |.+.++|++.+++++..|+.-+..|..
T Consensus 154 ~Lt~rE~~vl~~l~~--------g~s~~~Ia~~l~is~~TV~~hi~~i~~ 195 (215)
T 1a04_A 154 QLTPRERDILKLIAQ--------GLPNKMIARRLDITESTVKVHVKHMLK 195 (215)
T ss_dssp GSCHHHHHHHHHHHT--------TCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--------CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 477888889999864 678999999999999988887776643
No 376
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=52.45 E-value=75 Score=24.20 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=56.4
Q ss_pred EeeEEEEEEEEEeeecCCeeEEEEEcCC-----ceEEEEEecccccChhhhccCCCCCEEEEEEEEeeeCCeeEEEEEEE
Q 023576 70 ITNVTLVGLVYNKEERASDVNFTLDDGT-----GRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSV 144 (280)
Q Consensus 70 i~~V~iVG~V~~~~~~~t~~~~~LdDgT-----G~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f~~~~~i~~~~i 144 (280)
..+|+++|.|.+...... .++|+-.- -...+.+|...--..-....+++|.+|-|.|- |+|+ .|.+-.|
T Consensus 23 p~kVR~L~QVisYd~~sa--~L~l~~~p~~p~ss~~tv~VdI~~vL~~i~~~~~~vG~~VNI~Gy---ynGe-~i~~i~i 96 (123)
T 3kf8_B 23 PERLRILAQVKDFIPHES--TIVIDKVPTITSEQSTYINICIFNLLEACSSRVLVPGTLVNIDAF---YDGE-SINPVDI 96 (123)
T ss_dssp CEEEEEEEEEEEEEGGGT--EEEEECCGGGCCSCCCCEEEECTTTTTTSCGGGGSTTCEEEEEEE---ECSS-CEEEEEE
T ss_pred CceEEEEEEEEEEcCCCc--EEEEEecCCCCCCCCeEEEEEHHHHHhhcCccccccceEEEEEEE---ecCc-cccEEEE
Confidence 479999999999865543 34555441 12336666544222234677999999999995 4554 6777777
Q ss_pred eeCCCchHHHHHHHHHHHH
Q 023576 145 RPVTNFDEVTCHYIECIYF 163 (280)
Q Consensus 145 r~v~d~Nei~~H~Le~i~~ 163 (280)
..+. .-+++.-.|+++..
T Consensus 97 ~~vN-gs~~t~eni~~l~~ 114 (123)
T 3kf8_B 97 YEVN-GANFTMENIQLIDE 114 (123)
T ss_dssp EECC-GGGCCHHHHHHHHH
T ss_pred Eeec-ccceeHHHHHHHHH
Confidence 7774 45666666766643
No 377
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=51.89 E-value=18 Score=29.23 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=40.7
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhC-CCHHHHHHHHHHHHhCCeeee
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLK-IPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~-~~~~~v~~al~~L~~eG~IYs 268 (280)
.+...+||.+|.. ...++.+|++.|+ ++...|..-|..|.+.|.|=.
T Consensus 22 ~P~Rl~il~~L~~-------~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~ 69 (182)
T 4g6q_A 22 HPLRWRITQLLIG-------RSLTTRELAELLPDVATTTLYRQVGILVKAGVLMV 69 (182)
T ss_dssp SHHHHHHHHHTTT-------SCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHHHHHHh-------CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEE
Confidence 5688889999864 2579999999996 999999999999999999853
No 378
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=51.74 E-value=30 Score=29.74 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=41.3
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHh-----CCCHHHHHHHHHHHHhCCeeeecCCCccccccC
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQL-----KIPQKKIMDSIASLENEGLIYSTIDEFHYKFAR 279 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-----~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t~ 279 (280)
+..+.||..+.. + ..+..+|++.+ +.+..++..+|+.|.+.|.|+.. +..|..++
T Consensus 282 ~~~~~~l~~la~-g------~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~--~~~y~~~~ 341 (350)
T 2qen_A 282 PRYVDILRAIAL-G------YNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE--DNTYKIAD 341 (350)
T ss_dssp HHHHHHHHHHHT-T------CCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE--TTEEEESS
T ss_pred hhHHHHHHHHHh-C------CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec--CCEEEEec
Confidence 455667777754 1 25788998877 78999999999999999999875 34565443
No 379
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=51.63 E-value=3.1 Score=39.78 Aligned_cols=59 Identities=19% Similarity=0.414 Sum_probs=0.0
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCC-ee-eecCCCccccccC
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEG-LI-YSTIDEFHYKFAR 279 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG-~I-YsTiDd~hfk~t~ 279 (280)
+++.+||..|... +..++.+++++.++++.+.|..++..|.+.| .| +.......|..|+
T Consensus 5 ~~~~~iL~~l~~~-----~~~~~~~~~a~~~~~~~~~v~~~~~~L~~~~~~v~~~~~~~~~~~Lt~ 65 (508)
T 3l4g_A 5 QVAELLLRRLEAS-----DGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTA 65 (508)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhc-----CCCcCHHHHHHHcCCCHHHHHHHHHHHHhCCCeEEEEEEEEEEEEECH
Confidence 4888999988653 1146788999999999999999999999998 55 7777777887775
No 380
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=50.82 E-value=24 Score=25.77 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=38.6
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHh----CCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQL----KIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l----~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
.++-.||.+|... ..+--+|++.+ +++...|..+|..|.++|.|-...+
T Consensus 9 ~l~~~IL~~L~~~-------~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~ 61 (108)
T 3l7w_A 9 LIEYLILAIVSKH-------DSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTYTQ 61 (108)
T ss_dssp HHHHHHHHHHHHS-------CEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHcC-------CCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEEee
Confidence 3667789998752 34556666665 7999999999999999999988754
No 381
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=50.75 E-value=29 Score=29.76 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=42.0
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHh---CCCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQL---KIPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l---~~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
-+..|+.++-.. ...-+++..+++-+ ++++.-||.||..|..+|.|-+.-. -|..|
T Consensus 5 arSlIlsll~g~----~g~~i~~~~Li~l~~~~Gi~e~avRtAlsRL~~~G~L~~~~~--GY~LT 63 (247)
T 3kfw_X 5 ARSVVLSVLLGA----HPAWATASELIQLTADFGIKETTLRVALTRMVGAGDLVRSAD--GYRLS 63 (247)
T ss_dssp HHHHHHHHHTTT----TTSCBCHHHHHHHHTTTTCCHHHHHHHHHHHHHTTSEEEETT--EEEEC
T ss_pred CceeeEeeecCC----CCCcccHHHHHHHHHHcCCChHHHHHHHHHHHHcCCeeccCC--ceeeC
Confidence 456788876332 13468888888766 7999999999999999999987532 36655
No 382
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=50.08 E-value=26 Score=25.44 Aligned_cols=41 Identities=2% Similarity=0.092 Sum_probs=30.2
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHH
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASL 260 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L 260 (280)
+.-.+|+++|.+.- ...+++++|++.+++++..+...+...
T Consensus 7 ~~i~~~~~~i~~~~----~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 7 PKLTEAVSLMEANI----EEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHHTCS----SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh----cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34567888888752 235999999999988888776665543
No 383
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=49.89 E-value=30 Score=25.67 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=35.8
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHh--------CCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQL--------KIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l--------~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
++-.||.+|.+. + .+--+|++.+ .+++..|..+|..|.++|.|-+..+
T Consensus 13 l~~~IL~~L~~~----~---~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~ 68 (116)
T 3f8b_A 13 TNVILLNVLKQG----D---NYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWG 68 (116)
T ss_dssp HHHHHHHHHHHC----C---BCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHhC----C---CCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEee
Confidence 566788888752 2 3444555444 5899999999999999999988753
No 384
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=48.72 E-value=24 Score=26.91 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=34.6
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCe
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGL 265 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~ 265 (280)
+.+..|+.++. .|.++.+|++.|+++...|..-+......|.
T Consensus 36 e~r~~iv~~~~--------~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~ 77 (149)
T 1k78_A 36 VVRQRIVELAH--------QGVRPCDISRQLRVSHGCVSKILGRYYETGS 77 (149)
T ss_dssp HHHHHHHHHHH--------TTCCHHHHHHHHTCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 35566777663 2789999999999999999999998888775
No 385
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=48.57 E-value=16 Score=26.22 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=36.4
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHh----CCCHHHHHHHHHHHHhCCeeeecCCCccc
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQL----KIPQKKIMDSIASLENEGLIYSTIDEFHY 275 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l----~~~~~~v~~al~~L~~eG~IYsTiDd~hf 275 (280)
++..|..+++.... -..---+.++++++ ..+...|+++|+.|++.+.|=-.-|++.|
T Consensus 24 iqAaIVRIMK~rK~--l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~~~y 84 (88)
T 3o2p_E 24 LEACIVRIMKAKRN--LPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDGESY 84 (88)
T ss_dssp HHHHHHHHHHHHSE--EEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTSSEE
T ss_pred hheeeehhhccccc--ccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCCCeE
Confidence 66777778776310 01111234444444 47788999999999999988876444444
No 386
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=47.69 E-value=4.3 Score=33.03 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=0.0
Q ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 236 GVHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 236 Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
-++.++||+.++++...|..+|..|.++|.|=
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~ 195 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALSRVFQELEREGYIE 195 (213)
T ss_dssp --------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEE
Confidence 57889999999999999999999999999983
No 387
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=47.65 E-value=29 Score=28.02 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=35.8
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHh
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLEN 262 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~ 262 (280)
.|++.+.+||.+|.+ |.+.++|++.+++++..|+.-+..|..
T Consensus 159 ~Lt~rE~~vL~~l~~--------g~s~~~Ia~~l~~s~~Tv~~~i~~l~~ 200 (225)
T 3klo_A 159 KLTKREQQIIKLLGS--------GASNIEIADKLFVSENTVKTHLHNVFK 200 (225)
T ss_dssp TSCHHHHHHHHHHTT--------TCCHHHHHHHTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHc--------CCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 478888999999853 789999999999999999988877653
No 388
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=47.64 E-value=75 Score=29.93 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=29.7
Q ss_pred EEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEEEEee
Q 023576 90 NFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKS 132 (280)
Q Consensus 90 ~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~ 132 (280)
.+.|+|.||+|.+.... +...+..|..|-|.|+...
T Consensus 139 ~l~LEDesGRv~L~g~~-------~~~~lVTG~VvaV~G~~~~ 174 (476)
T 3e0j_A 139 ELVLEDELQRIKLKGTI-------DVSKLVTGTVLAVFGSVRD 174 (476)
T ss_dssp EEEEECSSCEEEEEESC-------CTTTCCTTCEEEEEEEECT
T ss_pred eEEEECCCCEEEEEEEc-------ccccccCCcEEEEEEEEcC
Confidence 69999999999988622 2456899999999999774
No 389
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=47.50 E-value=14 Score=30.40 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=30.2
Q ss_pred ccCHHHHHHHhCCCH-HHHHHHHHHHHhCCeeee
Q 023576 236 GVHVNELSEQLKIPQ-KKIMDSIASLENEGLIYS 268 (280)
Q Consensus 236 Gv~v~~I~~~l~~~~-~~v~~al~~L~~eG~IYs 268 (280)
-++.++||+.++++. ..|..+|..|.++|.|-.
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~ 202 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVY 202 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEe
Confidence 578899999999999 699999999999999854
No 390
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=47.31 E-value=11 Score=33.74 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=42.7
Q ss_pred hHHHHHHhcCCCCCCCCCccCHHHHHHHhCC------CHHHHHHHHHHHHhCCeeeec----CC---Ccccccc
Q 023576 218 DQMILDYLQQPSSSERERGVHVNELSEQLKI------PQKKIMDSIASLENEGLIYST----ID---EFHYKFA 278 (280)
Q Consensus 218 ~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~------~~~~v~~al~~L~~eG~IYsT----iD---d~hfk~t 278 (280)
+-.|+++|...+ .+...+++++|+++++. .+.-++..|+.|...|.+-.+ -| +++|+.|
T Consensus 46 ~lgif~~L~~~g--~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t 117 (372)
T 1fp1_D 46 DLNLFEIIAKAT--PPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLS 117 (372)
T ss_dssp HTTHHHHHHTCS--STTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEEC
T ss_pred HCChHHHHHhcC--CCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEecccccCCCCcCCeEecC
Confidence 345677776421 01112999999999998 677899999999999999876 22 3588766
No 391
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=47.26 E-value=36 Score=24.94 Aligned_cols=41 Identities=2% Similarity=0.102 Sum_probs=31.7
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHH
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIAS 259 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~ 259 (280)
.++-.+|+++|.+.- ..-+++++|++.+++++..+...+..
T Consensus 6 ~~~~~~~~~~i~~~~----~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 6 PNMRTRVCTVINNNI----AHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp CCHHHHHHHHHHTST----TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 346678999998862 34689999999999998887776544
No 392
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=47.22 E-value=20 Score=31.95 Aligned_cols=46 Identities=11% Similarity=0.165 Sum_probs=39.5
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
++..|+++|.+. ...+++++|+++++.++..++..|+.|..-|.+-
T Consensus 29 ~eLglfd~L~~~-----~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~ 74 (353)
T 4a6d_A 29 CELGVFDLLAEA-----PGPLDVAAVAAGVRASAHGTELLLDICVSLKLLK 74 (353)
T ss_dssp HHHTHHHHHHHS-----SSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCHHHHHhcC-----CCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEE
Confidence 566788888753 2468999999999999999999999999999884
No 393
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=47.16 E-value=33 Score=25.50 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=37.9
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHh------CCCHHHHHHHHHHHHhCCeeeecC
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQL------KIPQKKIMDSIASLENEGLIYSTI 270 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l------~~~~~~v~~al~~L~~eG~IYsTi 270 (280)
.++-.||.+|.+. -.+--+|++.+ .+++..|..+|..|..+|.|-+..
T Consensus 13 ~l~~~IL~lL~~~-------p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~ 66 (116)
T 3hhh_A 13 ILEGLVLAIIQRK-------ETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEK 66 (116)
T ss_dssp HHHHHHHHHHHHS-------CBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hHHHHHHHHHhcC-------CCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEe
Confidence 3677899999752 23555777766 589999999999999999998865
No 394
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=47.04 E-value=8.1 Score=31.30 Aligned_cols=47 Identities=9% Similarity=0.132 Sum_probs=39.2
Q ss_pred hhHHHHHHhcCCCCCCCCCc----cCHH-H-HHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 217 CDQMILDYLQQPSSSERERG----VHVN-E-LSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~G----v~v~-~-I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
.+..|+++++.. ... ++.. + ++++++.+..-.+++|+.++.+|.+.-
T Consensus 100 ~~~~il~~~~~~-----~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~G~l~~ 152 (169)
T 1u5t_B 100 VKEKLVDLIGDN-----PGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLI 152 (169)
T ss_dssp HHHHHHHHHHHS-----CSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhc-----CCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCEEE
Confidence 667899998753 123 6888 8 999999999999999999999999875
No 395
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=46.74 E-value=24 Score=27.26 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=33.7
Q ss_pred hHHHHHHhcCCCCCCCCCccCHHHHHHH----hCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 218 DQMILDYLQQPSSSERERGVHVNELSEQ----LKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 218 ~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~----l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
.-.||.+|.+. +-.|..+..-++. ++++...|..+|..|.++|.|-+..+
T Consensus 36 ~~~IL~lL~~~----~~~Gyei~k~l~~~~~~~~is~gtLYp~L~rLe~~GlI~~~~~ 89 (138)
T 2e1n_A 36 VCYVLAVLRHE----DSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWK 89 (138)
T ss_dssp HHHHHHHHTTS----CEEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHhC----CCcHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEee
Confidence 34488888752 2234433222221 25899999999999999999988643
No 396
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=46.43 E-value=31 Score=23.71 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=22.5
Q ss_pred cCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 237 VHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 237 v~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
.+.++|+..++.++++|+.+|..|-
T Consensus 49 ~~l~eia~~l~~~~~eve~vL~~lQ 73 (76)
T 2k9l_A 49 KSVEEISDVLRCSVEELEKVRQKVL 73 (76)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCHHHHHHHHHHHh
Confidence 5899999999999999999998764
No 397
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=45.26 E-value=19 Score=25.04 Aligned_cols=58 Identities=19% Similarity=0.274 Sum_probs=46.3
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCC-CHHHHHHHHHHHHhCCeeeecCCCccc
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKI-PQKKIMDSIASLENEGLIYSTIDEFHY 275 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~-~~~~v~~al~~L~~eG~IYsTiDd~hf 275 (280)
.|..+-+++++++++. .+.=+++++++..|+. ....|-+++.=|..-|.|=-+ .-++|
T Consensus 11 SL~~lt~kFi~l~~~~----~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~-~k~~~ 69 (76)
T 1cf7_A 11 SLGLLTTKFVSLLQEA----KDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKK-SKNSI 69 (76)
T ss_dssp CHHHHHHHHHHHHHHS----STTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEE-ETTEE
T ss_pred cHHHHHHHHHHHHHhC----CCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeec-CCCcE
Confidence 4667888888888864 2346799999999999 888999999999999998765 33344
No 398
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=44.39 E-value=13 Score=32.99 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=43.7
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCC---HHHHHHHHHHHHhCCeeeecC-CCcccccc
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIP---QKKIMDSIASLENEGLIYSTI-DEFHYKFA 278 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~---~~~v~~al~~L~~eG~IYsTi-Dd~hfk~t 278 (280)
++-.|++.|... ...+++++|+++++.+ +.-++..|+.|...|.+-.+- ++++|+.|
T Consensus 37 ~~lgif~~L~~~-----~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~t 97 (352)
T 1fp2_A 37 VEMNIPNIIQNH-----GKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALT 97 (352)
T ss_dssp HHTTHHHHHHHH-----TSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEEC
T ss_pred HHCChhhhhhhc-----CCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEecCCCCeEeCC
Confidence 444578887642 1268999999999984 778999999999999997752 35688765
No 399
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=43.77 E-value=15 Score=29.75 Aligned_cols=50 Identities=24% Similarity=0.314 Sum_probs=38.9
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHh---CCCHHHHHHHHHHHHhCCeeeecCCCcccc
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQL---KIPQKKIMDSIASLENEGLIYSTIDEFHYK 276 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l---~~~~~~v~~al~~L~~eG~IYsTiDd~hfk 276 (280)
......|.+|..- --+..+|.++| +++++.|..+|++|.+.|.| ||.-|.
T Consensus 19 ~a~~~Al~~Ls~r-------~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~l----dD~rfA 71 (177)
T 3e3v_A 19 KGYNAALNYLSYQ-------LRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLI----NDKNYA 71 (177)
T ss_dssp HHHHHHHHHHHSS-------CCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSS----CHHHHH
T ss_pred HHHHHHHHHhccc-------cccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC----CHHHHH
Confidence 3555667777652 45889999999 59999999999999999986 665553
No 400
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=43.48 E-value=20 Score=26.63 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=32.0
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCC---CHHH-HHHHHHHHH
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKI---PQKK-IMDSIASLE 261 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~---~~~~-v~~al~~L~ 261 (280)
...++|+++|+. +.++..+|++.+++ ++.+ |-+.|+.+.
T Consensus 11 T~Re~Ii~lL~~-------~plta~ei~~~l~i~~~~~ke~Vy~hLeHIa 53 (105)
T 2gmg_A 11 TRREKIIELLLE-------GDYSPSELARILDMRGKGSKKVILEDLKVIS 53 (105)
T ss_dssp HHHHHHHHHTTT-------SCBCTTHHHHSSCCCSSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHc-------CCCCHHHHHHHhCCCCCChHHHHHHHHHHHH
Confidence 478889999973 47899999999998 8888 777777654
No 401
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=43.21 E-value=39 Score=25.23 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=36.1
Q ss_pred HHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 219 QMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 219 ~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
..|..+|+.. ..++..++++..++++.+++..+|+.|..+|.|+.-
T Consensus 5 ~~l~~~L~~~-----~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~ 50 (135)
T 2v9v_A 5 KILAQIIQEH-----REGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLL 50 (135)
T ss_dssp HHHHHHHHHC-----SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHc-----CcCCCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEE
Confidence 3455566543 224555999999999999999999999999998875
No 402
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=43.17 E-value=13 Score=27.63 Aligned_cols=49 Identities=29% Similarity=0.326 Sum_probs=39.6
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHh------C--CCH-HHHHHHHHHHHhCCeeeecCC
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQL------K--IPQ-KKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l------~--~~~-~~v~~al~~L~~eG~IYsTiD 271 (280)
.++-.||.+|.+. ..+.-+|++.+ . ++. ..|..+|..|.++|.|-...+
T Consensus 13 ~~~~~IL~~L~~~-------~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~ 70 (118)
T 2esh_A 13 WLASTILLLVAEK-------PSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWD 70 (118)
T ss_dssp HHHHHHHHHHHHS-------CBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEE
T ss_pred hHHHHHHHHHHcC-------CCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEee
Confidence 4777899998642 36778888877 3 788 899999999999999988764
No 403
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=42.59 E-value=14 Score=33.20 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=44.4
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCC--CHH---HHHHHHHHHHhCCeeeecC----C---Ccccccc
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKI--PQK---KIMDSIASLENEGLIYSTI----D---EFHYKFA 278 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~--~~~---~v~~al~~L~~eG~IYsTi----D---d~hfk~t 278 (280)
++-.|++.|...+ +..++.++|+++++. ++. -++..|+.|...|.+-.+- | +++|..|
T Consensus 41 ~~Lgifd~L~~~g----~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t 110 (364)
T 3p9c_A 41 IELGLLEILVAAG----GKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAA 110 (364)
T ss_dssp HHHTHHHHHHHTT----TCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEEC
T ss_pred HHCChHHHHhhcC----CCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEeccccCCCCcCCEEecC
Confidence 5566888887631 246899999999997 655 7999999999999987752 1 4678765
No 404
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=42.51 E-value=31 Score=25.64 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=31.7
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEG 264 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG 264 (280)
....|+.+++ .|.++.+|++.|+++...|...+......|
T Consensus 11 ~r~~i~~~~~--------~G~s~~~ia~~lgis~~Tv~r~~~~~~~~g 50 (141)
T 1u78_A 11 ERAQLDVMKL--------LNVSLHEMSRKISRSRHCIRVYLKDPVSYG 50 (141)
T ss_dssp HHHHHHHHHH--------TTCCHHHHHHHHTCCHHHHHHHHHSGGGTT
T ss_pred HHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHcccccC
Confidence 4455666653 388999999999999999999998776655
No 405
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=42.44 E-value=20 Score=31.39 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=30.9
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
....|+++|.+. ....+++++|.+..++..++|-.+|+.|-
T Consensus 199 W~~~il~~L~~~----~~~~isi~~is~~T~i~~~DIi~tL~~l~ 239 (284)
T 2ozu_A 199 WKSVILECLYHQ----NDKQISIKKLSKLTGICPQDITSTLHHLR 239 (284)
T ss_dssp HHHHHHHHHHHC---------CHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc----CCCcEeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 556788888753 24579999999999999999999999883
No 406
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=42.43 E-value=19 Score=24.55 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=36.8
Q ss_pred CchhHHHHHHhcCCCCCCCCCc-cCHHHHHHHh-C----CCHHHHHHHHHHHHhCC-eeee
Q 023576 215 KDCDQMILDYLQQPSSSERERG-VHVNELSEQL-K----IPQKKIMDSIASLENEG-LIYS 268 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~G-v~v~~I~~~l-~----~~~~~v~~al~~L~~eG-~IYs 268 (280)
..++..|-++|+.. .+.| ++.++|...| . ++.+++.+.++.|.+.| .|+.
T Consensus 5 ~~~~~~~k~Li~~g----K~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI~Vvd 61 (72)
T 2k6x_A 5 PQIERRIKKLISLG----KKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGINIVE 61 (72)
T ss_dssp HHHHHHHHHHHHHH----HHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCCCCBC
T ss_pred HHHHHHHHHHHHHH----hHcCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCCCcccc
Confidence 34555565666432 2345 8999999988 2 79999999999999999 5654
No 407
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=42.23 E-value=28 Score=24.94 Aligned_cols=40 Identities=13% Similarity=0.264 Sum_probs=28.3
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHH
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASL 260 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L 260 (280)
+-.+|+++|.++- ...+++++|++.+++++..+...+...
T Consensus 3 ~i~~~~~~i~~~~----~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 3 AVRQVEEYIEANW----MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHT----TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc----cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3356777777652 235899999999988888776665543
No 408
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=41.57 E-value=44 Score=26.31 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=32.8
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
.|++...+||.++.+ |.+.++|++.+++++..|+.-+..|.
T Consensus 142 ~Lt~rE~~vl~~l~~--------g~s~~~Ia~~l~is~~TV~~~~~~i~ 182 (208)
T 1yio_A 142 SLTGREQQVLQLTIR--------GLMNKQIAGELGIAEVTVKVHRHNIM 182 (208)
T ss_dssp TSCHHHHHHHHHHTT--------TCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHc--------CCcHHHHHHHcCCCHHHHHHHHHHHH
Confidence 367788889998843 67999999999999998876666554
No 409
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=41.46 E-value=5.2 Score=30.07 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=31.0
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 235 RGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 235 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.=|+...|+++|++..+--|.+|.+|.+.|.|=.-
T Consensus 59 KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V 93 (108)
T 3iz6_V 59 KQITPSVLSERLRINGSLARQAIKDLESRGAIRVV 93 (108)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHHHHTSCEE
T ss_pred eEEeHHHHHhhhcccHHHHHHHHHHHHHCCCEEEE
Confidence 36788999999999999999999999999988553
No 410
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=40.69 E-value=25 Score=29.42 Aligned_cols=50 Identities=22% Similarity=0.388 Sum_probs=38.9
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHh---CCCHHHHHHHHHHHHhCCeeeecCCCcccc
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQL---KIPQKKIMDSIASLENEGLIYSTIDEFHYK 276 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l---~~~~~~v~~al~~L~~eG~IYsTiDd~hfk 276 (280)
.+....|.+|..- --+..+|.++| +++++.|..+|++|.+.|.| ||.-|.
T Consensus 62 ~a~~~Al~~Ls~r-------~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~l----dD~rfA 114 (221)
T 3d5l_A 62 KAYSRMLDYLSYQ-------MRTESDIVKKLKEIDTPEEFVEPILKKLRGQQLI----DDHAYA 114 (221)
T ss_dssp HHHHHHHHHHTTS-------CCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC----CHHHHH
T ss_pred HHHHHHHHHhccc-------cccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC----CHHHHH
Confidence 3455667777642 45889999988 59999999999999999986 665554
No 411
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=40.52 E-value=66 Score=24.54 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=32.1
Q ss_pred CCchhHHHHHHhcCCCCCCCCCc---cCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 214 LKDCDQMILDYLQQPSSSERERG---VHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~G---v~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
+++..+.|..+|=.. -.+.| .+.++|+..++.++++|+.+|..+-
T Consensus 17 ~~~~~~~ia~~iI~~---LD~~GYL~~~l~eia~~l~~~~~eve~vL~~iQ 64 (130)
T 2k9m_A 17 LEGKEQELALELLNY---LNEKGFLSKSVEEISDVLRCSVEELEKVRQKVL 64 (130)
T ss_dssp CCSHHHHHHHHHTTS---BCTTSSBSSCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh---cCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHh
Confidence 344556666655442 13445 4889999999999999999988764
No 412
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=40.28 E-value=45 Score=33.22 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=42.6
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
.+..|..||-++.+. ..+++++|++.+++++++++.+|..|+..+.|-
T Consensus 587 vs~~Qa~iLllFn~~------~~~t~~ei~~~t~i~~~~l~r~L~~l~k~~iL~ 634 (760)
T 1ldj_A 587 ASTFQMAILLQYNTE------DAYTVQQLTDSTQIKMDILAQVLQILLKSKLLV 634 (760)
T ss_dssp CCHHHHHHHHGGGSS------SEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEE
T ss_pred EcHHHHHHHHHhcCC------CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcce
Confidence 567899999988762 479999999999999999999999999988875
No 413
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=39.62 E-value=29 Score=27.77 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=37.3
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhC---CCHHHHHHHHHHHHh
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLK---IPQKKIMDSIASLEN 262 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~---~~~~~v~~al~~L~~ 262 (280)
.|+....+||.+|.+. ....++.++|++.+. .++..|+..+..|..
T Consensus 145 ~Lt~rE~~vl~~l~~~----~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~ 193 (220)
T 1p2f_A 145 HLPKKEFEILLFLAEN----AGKVVTREKLLETFWEDPVSPRVVDTVIKRIRK 193 (220)
T ss_dssp CCCHHHHHHHHHHHHT----TTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHC----CCceEcHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 4788889999999874 245799999999998 898888877776643
No 414
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=39.32 E-value=60 Score=23.11 Aligned_cols=51 Identities=10% Similarity=0.199 Sum_probs=40.5
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhC-----CCHHHHHHHHHHHHhCCeeeec
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLK-----IPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~-----~~~~~v~~al~~L~~eG~IYsT 269 (280)
.|...||+++..-. .+.=+.-.|+++.++ --...|+.+...|..+|.|--|
T Consensus 7 ~le~~Il~ll~~R~---~~kTicPSEvARal~~~~Wr~lM~~vR~~A~~La~~G~v~I~ 62 (85)
T 2ns0_A 7 ELEECIRALLDARA---DSASICPSDVARAVAPDDWRPLMEPVREAAGRLADAGEVEVT 62 (85)
T ss_dssp HHHHHHHHHHHHSC---TTCCBCHHHHHHHHCTTSCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhC---CCCCcCHHHHHHHhCchhHHHHhHHHHHHHHHHHHCCcEEEE
Confidence 57889999998742 334566799999994 4467899999999999998654
No 415
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=39.24 E-value=22 Score=32.15 Aligned_cols=46 Identities=9% Similarity=0.096 Sum_probs=36.9
Q ss_pred hHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 218 DQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 218 ~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
+.+|++.|... .-+.++++++.++++...++.+|..|.+.|.|-.+
T Consensus 299 ~~~ll~~l~~~------p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~ 344 (373)
T 2qc0_A 299 SHELVQVIFEQ------PYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEV 344 (373)
T ss_dssp CHHHHHHHHHC------SEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC
T ss_pred HHHHHHHHHhC------CcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEe
Confidence 34566665532 24688999999999999999999999999999765
No 416
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=38.60 E-value=40 Score=24.14 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=29.0
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHH
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASL 260 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L 260 (280)
++-..|+++|.++- ...+++++|++.+++++..+...+...
T Consensus 5 ~~i~~~~~~i~~~~----~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 5 PIIQNVLSYITEHF----SEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp CHHHHHHHHHHHHT----TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh----cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35566788887752 236899999999888887776665543
No 417
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=38.32 E-value=42 Score=19.94 Aligned_cols=24 Identities=4% Similarity=0.314 Sum_probs=16.7
Q ss_pred HHHHHHHhCCCHHH-HHHHHHHHHh
Q 023576 239 VNELSEQLKIPQKK-IMDSIASLEN 262 (280)
Q Consensus 239 v~~I~~~l~~~~~~-v~~al~~L~~ 262 (280)
++++++..+.+.++ |++||.....
T Consensus 17 Ld~~a~~~g~srS~~ir~ai~~~l~ 41 (45)
T 2cpg_A 17 LEKMAREMGLSKSAMISVALENYKK 41 (45)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45566666777777 7788876654
No 418
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=37.96 E-value=58 Score=23.56 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=34.4
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHh-CCCHHHHHHHHHHHHh
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQL-KIPQKKIMDSIASLEN 262 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-~~~~~~v~~al~~L~~ 262 (280)
+.++.||...++.+. .--++..|+++| +-++++|++...+|+.
T Consensus 39 e~DR~IL~~cQ~~G~----s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 39 EADRVILTMCQEQGA----QPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp HHHHHHHHHHHHTTS----CTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHhcCC----ChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 467889998887531 123788899999 5999999999999986
No 419
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=37.52 E-value=31 Score=29.13 Aligned_cols=28 Identities=11% Similarity=0.251 Sum_probs=25.9
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHHHh
Q 023576 235 RGVHVNELSEQLKIPQKKIMDSIASLEN 262 (280)
Q Consensus 235 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~ 262 (280)
+.+++++|++.++.+..+|+++|+.|..
T Consensus 29 epvs~~~La~~l~~~~~~v~~~l~~L~~ 56 (219)
T 2z99_A 29 TPVTADALAAATEQPVYRVAAKLQLMAD 56 (219)
T ss_dssp SCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4699999999999999999999999975
No 420
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=37.39 E-value=49 Score=23.18 Aligned_cols=42 Identities=10% Similarity=0.214 Sum_probs=31.7
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEG 264 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG 264 (280)
.+..++..+.. ..|.++.+|++.++++...|..-+......|
T Consensus 10 ~k~~~v~~~~~------~~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g 51 (97)
T 2jn6_A 10 FKRDAVALYEN------SDGASLQQIANDLGINRVTLKNWIIKYGSNH 51 (97)
T ss_dssp HHHHHHHHHTT------GGGSCHHHHHHHHTSCHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHH------cCCChHHHHHHHHCcCHHHHHHHHHHHhhcC
Confidence 45556665532 1288999999999999999999887776655
No 421
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=37.12 E-value=53 Score=23.36 Aligned_cols=39 Identities=3% Similarity=0.176 Sum_probs=27.8
Q ss_pred hHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHH
Q 023576 218 DQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIAS 259 (280)
Q Consensus 218 ~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~ 259 (280)
-.+|+++|.+.- .+.-+++++|++.+++++..+...+..
T Consensus 5 i~~~~~~i~~~~---~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 5 VREACQYISDHL---ADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHTS---SCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---ccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 356788887652 224789999999988888777666554
No 422
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=37.03 E-value=78 Score=22.16 Aligned_cols=53 Identities=11% Similarity=0.364 Sum_probs=40.1
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHH-------Hh-CCCHHHHHHHHHHHHhCCe--eeec
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSE-------QL-KIPQKKIMDSIASLENEGL--IYST 269 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~-------~l-~~~~~~v~~al~~L~~eG~--IYsT 269 (280)
.+.-..|++.+.+.+ ....=+++-||.+ .| ++++.-+++||.-|+..|. |+..
T Consensus 8 eeWa~~Iy~Wv~~~G--~~~sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA~i~~~ 70 (79)
T 3htu_A 8 EEWGKLIYQWVSRSG--QNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIITV 70 (79)
T ss_dssp HHHHHHHHHHHHTTC--CSCSEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHHHHcC--CCCceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 446678999988865 2334468888887 34 5999999999999999884 5553
No 423
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=36.72 E-value=24 Score=26.05 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=22.6
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 243 SEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 243 ~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
...|++++.....+++.|.++|.|-
T Consensus 23 ~e~l~Ise~~~~~il~~L~d~GyI~ 47 (102)
T 2hgc_A 23 ENDIGVTEDQFDDAVNFLKREGYII 47 (102)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHhcCCCHHHHHHHHHHHHHCCCcc
Confidence 4677999999999999999999984
No 424
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=35.98 E-value=24 Score=24.58 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=32.5
Q ss_pred hhHHHHHHhcCCCCCCCCCccCH----HHHHHHh----CCCHHHHHHHHHHHHhCCeeeecC
Q 023576 217 CDQMILDYLQQPSSSERERGVHV----NELSEQL----KIPQKKIMDSIASLENEGLIYSTI 270 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v----~~I~~~l----~~~~~~v~~al~~L~~eG~IYsTi 270 (280)
++..|..+++.. .-++. .++++++ ..+...|+++|+.|++.+.|=-.-
T Consensus 12 i~AaIVRIMK~r------K~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~ 67 (77)
T 3tdu_C 12 IQAAIVRIMKMR------KVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVD 67 (77)
T ss_dssp HHHHHHHHHHHH------SEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEET
T ss_pred EeeEEeeeeccc------ceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCC
Confidence 566677777653 13333 3334444 477789999999999999887653
No 425
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=35.81 E-value=34 Score=21.59 Aligned_cols=34 Identities=12% Similarity=0.384 Sum_probs=24.4
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHh-CCCHHH
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQL-KIPQKK 252 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-~~~~~~ 252 (280)
++.++++.+|.+.. ...|-+-++|.++| +++..+
T Consensus 5 EvDdelY~YIas~t---~~igEsaSdiLRRll~l~~~~ 39 (50)
T 1xrx_A 5 EVDDELYSYIASHT---KHIGESASDILRRMLKFSAAS 39 (50)
T ss_dssp EECHHHHHHHHTTC---SSTTCCHHHHHHHHHTC----
T ss_pred eecHHHHHHHHHhc---hhhccCHHHHHHHHHcCCccc
Confidence 36788999999864 45788999999988 766554
No 426
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=35.80 E-value=27 Score=26.40 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=35.2
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHH--hCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQ--LKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~--l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
+.-.||.+|. . +-.|..+...++. +++++..|-.+|..|..+|.|-+..+
T Consensus 22 l~~~IL~lL~-~----p~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~ 73 (123)
T 3ri2_A 22 LVMLVLSQLR-E----PAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWD 73 (123)
T ss_dssp HHHHHHHHTT-S----CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHc-C----CCCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEec
Confidence 5556788887 3 1235444333332 37999999999999999999988643
No 427
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=35.75 E-value=87 Score=22.29 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=40.7
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHh----CCC---HHHHHHHHHHHHhCCeeeec
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQL----KIP---QKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l----~~~---~~~v~~al~~L~~eG~IYsT 269 (280)
....++|++.|.... ...|.++..|.+-+ ..+ ...++.+|..|++.|.+-.+
T Consensus 8 P~y~~MI~eAI~~lk---er~GsS~~AI~KyI~~~y~~~~~~~~~l~~aLk~~v~~G~l~q~ 66 (90)
T 1hst_A 8 PTYSEMIAAAIRAEK---SRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAAGVLKQT 66 (90)
T ss_dssp CCHHHHHHHHHHTCC---CSSCEEHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHHccCchhHHHHHHHHHHHHHHcCCeeee
Confidence 457889999999873 45799999998766 232 33499999999999998775
No 428
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=35.72 E-value=41 Score=30.55 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=38.9
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhC
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENE 263 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~e 263 (280)
.+..|-.||-++.+. ....+++++|++.+++++++++.+|.-|+.-
T Consensus 197 vs~~Qa~ILllFn~~----~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~~ 242 (382)
T 3dpl_C 197 VTTFQLAVLFAWNQR----PREKISFENLKLATELPDAELRRTLWSLVAF 242 (382)
T ss_dssp EEHHHHHHHGGGTTC----TTCCEEHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_pred EcHHHHHHHHHhccC----CCCcCcHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 466888999988763 1258999999999999999999999999874
No 429
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=35.63 E-value=51 Score=22.81 Aligned_cols=39 Identities=5% Similarity=0.154 Sum_probs=29.0
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHh
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLEN 262 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~ 262 (280)
+.+..+++.+. .|.++.+|++.|+++...|..-+.....
T Consensus 26 e~k~~~v~~~~--------~g~s~~~iA~~~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 26 RDKIHAIQRIH--------DGESKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp HHHHHHHHHHH--------HTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--------CCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 34456666553 2689999999999999999888765443
No 430
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=35.63 E-value=28 Score=30.37 Aligned_cols=40 Identities=13% Similarity=0.367 Sum_probs=33.6
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
....|+++|.+. ...+++++|.+..++..+||-.+|+.|-
T Consensus 194 W~~~i~~~L~~~-----~~~isi~~is~~Tgi~~~Dii~tL~~l~ 233 (276)
T 3to7_A 194 WSDTLITLLVEH-----QKEITIDEISSMTSMTTTDILHTAKTLN 233 (276)
T ss_dssp HHHHHHHHHHHT-----CSEEEHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc-----CCceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 567889988864 2479999999999999999988888774
No 431
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=34.90 E-value=35 Score=27.46 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=35.8
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHh-----CCCHHHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQL-----KIPQKKIMDSIASLE 261 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-----~~~~~~v~~al~~L~ 261 (280)
.|+.-..+||.+|.+. ...+++.++|++++ ..++..|+..+..|.
T Consensus 156 ~Lt~rE~~vL~~l~~~----~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~ 205 (230)
T 2oqr_A 156 TLPLKEFDLLEYLMRN----SGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLR 205 (230)
T ss_dssp CCCHHHHHHHHHHHHT----TTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHhC----CCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHH
Confidence 5888899999998764 34689999999999 677777777766654
No 432
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=34.59 E-value=24 Score=26.32 Aligned_cols=48 Identities=23% Similarity=0.328 Sum_probs=37.1
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhC------CCHHHHHHHHHHHHhCCeeeecCC
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLK------IPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~------~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
+.-.||.+|.+. -.+--+|++.+. ++...|..+|..|..+|.|-+..+
T Consensus 15 l~~~IL~lL~~~-------p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~ 68 (117)
T 3elk_A 15 ITLYILKELVKR-------PMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESS 68 (117)
T ss_dssp HHHHHHHHHHHS-------CEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHHHHcC-------CCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEee
Confidence 666789888742 245566666663 888999999999999999988754
No 433
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=34.59 E-value=49 Score=24.56 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=29.5
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHH
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASL 260 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L 260 (280)
.+-.+|+++|.+.- ...+++++||+.+++++..+...+...
T Consensus 11 ~~i~~~~~~i~~~~----~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 11 ITIHSILDWIEDNL----ESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHHHHTTT----TSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc----CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35567888888752 235899999999888887776665543
No 434
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.43 E-value=38 Score=26.65 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=37.2
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHh-C------------CCHHHHHHHHHHHHhCCeeeecCCCcccc
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQL-K------------IPQKKIMDSIASLENEGLIYSTIDEFHYK 276 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-~------------~~~~~v~~al~~L~~eG~IYsTiDd~hfk 276 (280)
+....|.+|..- --+..+|.++| . ++++.|..+|++|.+.|.| ||..|.
T Consensus 7 a~~~Al~~Ls~r-------~~S~~EL~~kL~~k~~~~~g~e~~~~~~~~i~~vl~~l~~~g~l----dD~rfA 68 (159)
T 3c1d_A 7 LLDRAVRILAVR-------DHSEQELRRKLAAPIMGKNGPEEIDATAEDYERVIAWCHEHGYL----DDSRFV 68 (159)
T ss_dssp HHHHHHHHHTTS-------CCCHHHHHHHHHCC-----------CCHHHHHHHHHHHHHTTSC----CHHHHH
T ss_pred HHHHHHHHhhcc-------cccHHHHHHHHHHHhhcccCccccCCCHHHHHHHHHHHHHcCCc----CHHHHH
Confidence 455667777642 45788888887 3 7899999999999999986 666554
No 435
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=34.33 E-value=44 Score=27.16 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=34.0
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHh-----CCCHHHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQL-----KIPQKKIMDSIASLE 261 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-----~~~~~~v~~al~~L~ 261 (280)
.|++...+||.+|.+. ....++.++|++++ ..++..|+.-+..|.
T Consensus 153 ~LT~rE~~vL~~l~~~----~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr 202 (238)
T 2gwr_A 153 SLTPLEFDLLVALARK----PRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLR 202 (238)
T ss_dssp CCCHHHHHHHHHHHHS----TTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHC----CCceecHHHHHHHHcCCCCCCCcccHHHHHHHHH
Confidence 4888899999998764 34579999999999 677777666655543
No 436
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=34.12 E-value=84 Score=22.52 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=40.8
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHh--CCC--------HHHHHHHHHHHHhCCeeeec
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQL--KIP--------QKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l--~~~--------~~~v~~al~~L~~eG~IYsT 269 (280)
....++|++.|.... ...|.+...|.+-+ ++. ...++.+|..|++.|.+-.+
T Consensus 8 P~y~~MI~eAI~alk---er~GsS~~AIkKyI~~~y~~~~~~~~~~~~lk~aLK~~v~~G~lvq~ 69 (93)
T 1ust_A 8 KSYRELIIEGLTALK---ERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQP 69 (93)
T ss_dssp CCHHHHHHHHHTTTT---TTSCEEHHHHHHHHHHHCHHHHTSTTHHHHHHHHHHHHHHTTSEECT
T ss_pred CCHHHHHHHHHHHcc---cCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEec
Confidence 457889999999863 45799999998766 232 23499999999999999875
No 437
>2jqo_A Hypothetical protein YOBA; OB-fold, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis}
Probab=34.03 E-value=41 Score=25.02 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=40.2
Q ss_pred EeeEEEEEEEEEeeecCCeeEEEEEcCCc----------------eEEEEEecccccChhhhccCCCCCEEEEEEE--Ee
Q 023576 70 ITNVTLVGLVYNKEERASDVNFTLDDGTG----------------RVVCKRWASEVFDTREMEAIQDGMYVRLIGN--LK 131 (280)
Q Consensus 70 i~~V~iVG~V~~~~~~~t~~~~~LdDgTG----------------~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~--l~ 131 (280)
...+.+.|.|+..+.. ..|.++|.|- -..-++|..-. +......+..|+.|||.=. +.
T Consensus 11 ~~~~t~EGYII~k~~n---~vyfi~dktf~~~elqn~seqql~~e~~s~ivll~~~-~~d~~~~lK~GdKIKVW~s~iLE 86 (108)
T 2jqo_A 11 TKMQSLVGYVVLKDNE---RAILITDTKAPGKEDYNLSEGQLMNKFKNNIVIVGLS-EIDNTDDLKRGEKIKVWFHTRKE 86 (108)
T ss_dssp SCCEEEEEEEEEECSS---EEEEECSSCCCCTTGGGSCHHHHHHHSTTTEEEEECT-TCTTGGGCCTTEEEEEEEEEEEC
T ss_pred cccccceEEEEEecCC---EEEEEcCCCcchHHHHHHHHHHHHhhCCCcEEEEecc-ccccccccCCCCEEEEEehhhhh
Confidence 6788999999987553 6889999982 11112221100 0112567999999999855 23
Q ss_pred eeCCeeEEE
Q 023576 132 SFQGKKQIV 140 (280)
Q Consensus 132 ~f~~~~~i~ 140 (280)
+|-++..+.
T Consensus 87 SyPaK~~V~ 95 (108)
T 2jqo_A 87 SNPPSATIQ 95 (108)
T ss_dssp SSSCEEEEE
T ss_pred hCCcchhhh
Confidence 344443333
No 438
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A
Probab=33.80 E-value=35 Score=28.77 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=28.8
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHH
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIM 254 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~ 254 (280)
.......||++|++++ =.+-++|+++|+++.++|+
T Consensus 181 idekeerileilrenp------wtphdeiarrlglsvseve 215 (380)
T 3m6z_A 181 IDEKEERILEILRENP------WTPHDEIARRLGLSVSEVE 215 (380)
T ss_dssp CCHHHHHHHHHHHHCT------TCCHHHHHHHHTCCHHHHH
T ss_pred CChHHHHHHHHHhcCC------CCChHHHHHHhCCchhhhc
Confidence 4567788999999864 3478999999999998875
No 439
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=33.56 E-value=42 Score=29.35 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=30.7
Q ss_pred hhHHHHHHhcCCCCC-CCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 217 CDQMILDYLQQPSSS-ERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~-~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
....|+++|.+.... ....-+++++|.+..++..++|-.+|+.|-
T Consensus 192 W~~~i~~~L~~~~~~~~~~~~isi~~is~~T~i~~~Dii~tL~~l~ 237 (280)
T 2ou2_A 192 WSQTILEILMGLKSESGERPQITINEISEITSIKKEDVISTLQYLN 237 (280)
T ss_dssp HHHHHHHHC-----------CCBHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccccCCCCceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 567889988764210 012369999999999999999988888864
No 440
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=33.43 E-value=42 Score=30.08 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=30.5
Q ss_pred c-cCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 236 G-VHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 236 G-v~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
| -++++|.+.+.+++++|.++++.|.+.|.+..
T Consensus 50 G~~tl~ei~~~l~~~~~~v~~~i~~L~~~g~l~~ 83 (353)
T 3h5n_A 50 TPSSYTAALETANIPEKDFSNCFRFLKENFFIIP 83 (353)
T ss_dssp SCBCHHHHHTTCCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHcCCCHHHHHHHHHHHHHCCCEee
Confidence 5 69999999999999999999999999998873
No 441
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=32.96 E-value=41 Score=25.69 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=24.8
Q ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHh
Q 023576 236 GVHVNELSEQLKIPQKKIMDSIASLEN 262 (280)
Q Consensus 236 Gv~v~~I~~~l~~~~~~v~~al~~L~~ 262 (280)
|.++.++++++++++..|++++...-.
T Consensus 92 G~n~~eLArkYgLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 92 GRNVSELTTRYGVTFNTVYKAIRRMRR 118 (129)
T ss_dssp SSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999999999987654
No 442
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=32.59 E-value=76 Score=21.89 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=38.8
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
.+|-.++.+++.+. .-.|+..|.++|++.-..--..++.|..+|.|=
T Consensus 9 D~Ly~~A~~~V~~~------~~aS~S~lQR~lrIGYnRAArlid~lE~~GiVg 55 (73)
T 2ve8_A 9 DPLYDEAVRFVTES------RRASISAVQRKLKIGYNRAARMIEAMEMAGVVT 55 (73)
T ss_dssp CTTHHHHHHHHHHH------CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBC
T ss_pred cHHHHHHHHHHHhc------CCccHHHHHHHHccChHHHHHHHHHHHHCCcCC
Confidence 45777788877653 256999999999988888899999999999883
No 443
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=32.59 E-value=43 Score=21.31 Aligned_cols=35 Identities=9% Similarity=0.179 Sum_probs=25.6
Q ss_pred chhHHHHHHhcCCCCCCCCCccC----HHHHHHHhCCCHHHHHHHHH
Q 023576 216 DCDQMILDYLQQPSSSERERGVH----VNELSEQLKIPQKKIMDSIA 258 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~----v~~I~~~l~~~~~~v~~al~ 258 (280)
+.+.+|++++.. |.+ +.+|++.++++...|+.-+.
T Consensus 9 efK~~~~~~~~~--------g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 9 HFKLQVLESYRN--------DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp HHHHHHHHHHHH--------CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHc--------CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 356667666643 446 99999999999988876554
No 444
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=32.27 E-value=1.5e+02 Score=27.95 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=39.3
Q ss_pred eeEEEEEEEEEeee-cCCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCEEEEEEE
Q 023576 71 TNVTLVGLVYNKEE-RASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGN 129 (280)
Q Consensus 71 ~~V~iVG~V~~~~~-~~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~ 129 (280)
..+.||++|+.+.. ....+.+.|-|+|+.-....+... ....+++|++++|...
T Consensus 222 ~f~DLv~qVv~~~~~d~~~~~L~VwDgT~~~~~~~~~~~-----~fP~~~~G~Vlri~~~ 276 (495)
T 1jb7_A 222 GDFDVVAKILQVHELDEYTNELKLKDASGQVFYTLSLKL-----KFPHVRTGEVVRIRSA 276 (495)
T ss_dssp SCEEEEEEEEEEEECSSSEEEEEEEETTCCEEEEEEETT-----TCTTCCTTCEEEEEEE
T ss_pred CceeEEEEEeEEeccCCCeEEEEEEeCCCCCcceeeccc-----cCCceeeEEEEEEecC
Confidence 45889999998865 357889999999997444433332 2456778999998875
No 445
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=32.04 E-value=49 Score=25.14 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=22.5
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 235 RGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 235 ~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
.|.+..+|++.++.+...|...-..|.
T Consensus 74 ~G~syreIA~~~g~S~aTIsRv~r~L~ 100 (119)
T 3kor_A 74 QGYTYATIEQESGASTATISRVKRSLQ 100 (119)
T ss_dssp HTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHh
Confidence 489999999999999988877666664
No 446
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=31.91 E-value=46 Score=20.62 Aligned_cols=21 Identities=5% Similarity=0.080 Sum_probs=10.4
Q ss_pred HHHHhCCCHHH-HHHHHHHHHh
Q 023576 242 LSEQLKIPQKK-IMDSIASLEN 262 (280)
Q Consensus 242 I~~~l~~~~~~-v~~al~~L~~ 262 (280)
+++..+++.++ |++||..+++
T Consensus 27 ~a~~~g~s~s~~ir~ai~~~l~ 48 (55)
T 2k9i_A 27 IAKEKNLTLSDVCRLAIKEYLD 48 (55)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHH
Confidence 33344444444 5566655543
No 447
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=31.89 E-value=82 Score=23.33 Aligned_cols=42 Identities=7% Similarity=0.102 Sum_probs=31.9
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCC--CHHHHHHHHHH
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQLKI--PQKKIMDSIAS 259 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~--~~~~v~~al~~ 259 (280)
++.+++|+++|++-+ ..+=++..+||+.++. ....|-.||..
T Consensus 2 t~F~~~V~~~l~~IP---~G~v~TYg~iA~~~G~p~aaRaVG~Al~~ 45 (108)
T 2kif_A 2 DQFLVQIFAVIHQIP---KGKVSTYGEIAKMAGYPGYARHVGKALGN 45 (108)
T ss_dssp CHHHHHHHHHHTTCC---TTCBEEHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCC---CCCcEeHHHHHHHhCCCCcHHHHHHHHHh
Confidence 568999999999864 3345799999999975 45667777654
No 448
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=31.59 E-value=73 Score=22.54 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=40.2
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHh--CCC---------HHHHHHHHHHHHhCCeeeec
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQL--KIP---------QKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l--~~~---------~~~v~~al~~L~~eG~IYsT 269 (280)
....++|++.|.... ...|.++..|.+-+ ++. ...++.+|..|++.|.+-.+
T Consensus 8 P~y~~MI~eAI~alk---er~GsS~~AIkKyI~~~y~~~~~~~~~~~~~lk~aLK~~v~~G~lvq~ 70 (88)
T 1uss_A 8 LTYKEMILKSMPQLN---DGKGSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCVENGELVQP 70 (88)
T ss_dssp CCHHHHHHHHHHHSC---CTTSBCHHHHHHHHHHHTTTTSCCSSTHHHHHHHHHHHHHHHSSEECS
T ss_pred CCHHHHHHHHHHHhc---cCCCcCHHHHHHHHHHhCCCcccchHhHHHHHHHHHHHHHHcCCEEec
Confidence 357789999998763 45799999998766 232 23489999999999998765
No 449
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=31.06 E-value=86 Score=26.74 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=39.4
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHH----HhC--CCHHHHHHHHHHHHhCCeeeecCCCcccccc
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSE----QLK--IPQKKIMDSIASLENEGLIYSTIDEFHYKFA 278 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~----~l~--~~~~~v~~al~~L~~eG~IYsTiDd~hfk~t 278 (280)
+++..+.||..+.. + . +.++|++ .++ ++..++.++|+.|.+.|.|+..- ..|..+
T Consensus 288 l~~~~~~~l~~la~-g------~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~--~~y~f~ 348 (357)
T 2fna_A 288 ARKRYLNIMRTLSK-C------G-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG--EKYCPS 348 (357)
T ss_dssp GHHHHHHHHHHHTT-C------B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS--SCEEES
T ss_pred ccHHHHHHHHHHHc-C------C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC--CEEEec
Confidence 34455667777653 1 2 7888874 446 88999999999999999998752 456544
No 450
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=30.87 E-value=37 Score=29.68 Aligned_cols=40 Identities=23% Similarity=0.398 Sum_probs=28.6
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
....|+++|++. ..-+++++|.+..++..++|-.+|+.|-
T Consensus 194 W~~~il~~L~~~-----~~~isi~~is~~T~i~~~Dii~tL~~l~ 233 (278)
T 2pq8_A 194 WSWVLLENLRDF-----RGTLSIKDLSQMTSITQNDIISTLQSLN 233 (278)
T ss_dssp HHHHHHHHTC------------CHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc-----CCCccHHHHHHHhCCCHHHHHHHHHHCC
Confidence 557788998763 2368999999999999999988888774
No 451
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=29.81 E-value=66 Score=27.32 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=41.0
Q ss_pred CchhHHHHHHhcCC-CCCCCCCccCHHHHHHHhC--CCHHHHHHHHHHHHhCCeeeec
Q 023576 215 KDCDQMILDYLQQP-SSSERERGVHVNELSEQLK--IPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~-~~~~~e~Gv~v~~I~~~l~--~~~~~v~~al~~L~~eG~IYsT 269 (280)
..++..|++.|..- .......|++.+++.+++. +++.-+...|+.|+.+|.|-.+
T Consensus 65 ~~~~~~l~~~L~~~H~~~P~~~G~~~~~L~~~~~~~~~~~l~~~ll~~l~~~g~l~~~ 122 (258)
T 1lva_A 65 QAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLA 122 (258)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCccCCCHHHHHHhccccCCHHHHHHHHHHHHHCCCEEec
Confidence 45667777777531 0112457999999999983 8888899999999999987653
No 452
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=29.62 E-value=51 Score=23.73 Aligned_cols=46 Identities=11% Similarity=0.289 Sum_probs=34.2
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHh--CCC--H----HHHHHHHHHHHhCCee
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQL--KIP--Q----KKIMDSIASLENEGLI 266 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l--~~~--~----~~v~~al~~L~~eG~I 266 (280)
.|++.-..|++.+-. .-++.+|++.| .|+ . .+|..-|+.|.+.|.|
T Consensus 40 ~Ln~~a~~Iw~l~DG--------~rtv~eIv~~L~~~y~~~~e~i~~DV~~FL~~L~~~g~I 93 (95)
T 3g2b_A 40 ELDDIALVVAQRYDG--------TQSLAQIAQTLAAEFDADASEIETDVIELTTTLHQKRLL 93 (95)
T ss_dssp CCCTHHHHHHHHCCS--------SSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred ecCHHHHHHHHHccC--------CCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHCcCE
Confidence 577788889998643 45899998877 244 2 4688888888888876
No 453
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=29.61 E-value=9.5 Score=30.00 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=30.2
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIAS 259 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~ 259 (280)
.|++.++.|+.+.-- +|.+..+|++.+++++..|+..+..
T Consensus 135 ~L~~~~r~vl~l~~~-------~g~s~~eIA~~lgis~~tV~~~l~r 174 (184)
T 2q1z_A 135 RLPEAQRALIERAFF-------GDLTHRELAAETGLPLGTIKSRIRL 174 (184)
T ss_dssp TSCHHHHHHHHHHHH-------SCCSSCCSTTTCCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHH-------cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 467777777765322 3889999999999999888876654
No 454
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=29.57 E-value=64 Score=27.47 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=38.4
Q ss_pred CCCchhHHHHH-HhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHH-HHhCCeeeecC
Q 023576 213 GLKDCDQMILD-YLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIAS-LENEGLIYSTI 270 (280)
Q Consensus 213 ~l~~~~~~Vl~-~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~-L~~eG~IYsTi 270 (280)
.+....+.++. +++.. ....+++..+++.|+++...+...++. |++.|.|+.+-
T Consensus 244 ~l~~~e~~~i~~~~~~~----~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~ 299 (324)
T 1hqc_A 244 GLEKRDREILEVLILRF----GGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTP 299 (324)
T ss_dssp CCCHHHHHHHHHHHHHS----CSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHHHHHHHh----cCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCC
Confidence 34555545554 34332 123568999999999999999887776 99999998763
No 455
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=29.48 E-value=95 Score=26.12 Aligned_cols=57 Identities=28% Similarity=0.467 Sum_probs=41.1
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHh--CCC-------HHHHHHHHHHHHhCCeeeecCC-Cccccc
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQL--KIP-------QKKIMDSIASLENEGLIYSTID-EFHYKF 277 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l--~~~-------~~~v~~al~~L~~eG~IYsTiD-d~hfk~ 277 (280)
..++|++.+++. ...+.+..+|++++ +++ ..++...|++|..+|.|-...| +..||+
T Consensus 221 r~~~i~~~l~~~----~~~~~t~~ei~~~~~~~~p~~l~~~a~~~~~ahL~~L~~~g~v~~~~~~~~~w~~ 287 (289)
T 4ad9_A 221 REQQILTLFREN----FEKSFTVMELVKIIYKNTPENLHEMAKHNLLLHLKKLEKEGKIFSNTDPDKKWKA 287 (289)
T ss_dssp HHHHHHHHHHHT----TTCCBCHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHHHHTTSEEECCCSSCCEEE
T ss_pred HHHHHHHHHHhc----CCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHCCcEEEEeCCCceeec
Confidence 345677777653 24589999999988 443 4457888999999999977654 346664
No 456
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=29.10 E-value=63 Score=23.34 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=40.3
Q ss_pred chhHHHHHHhcCCCCCCCCCcc-CHHHHHHHh--CCCHHHHHHHHHHHHhCCeeeecCCC--ccccccC
Q 023576 216 DCDQMILDYLQQPSSSERERGV-HVNELSEQL--KIPQKKIMDSIASLENEGLIYSTIDE--FHYKFAR 279 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv-~v~~I~~~l--~~~~~~v~~al~~L~~eG~IYsTiDd--~hfk~t~ 279 (280)
.+.-.||.+|.... ..-.|. -+++|.+++ .+++..|-.+|..|.++|.|-+.-+. -.|..|+
T Consensus 9 ~~~~~IL~lL~~~~--~~~~g~~i~~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~ 75 (99)
T 2co5_A 9 INYYIILKVLVING--SRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTE 75 (99)
T ss_dssp HHHHHHHHHHHHTT--TEEEGGGHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECH
T ss_pred ccHHHHHHHHHhcC--CCCcHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECH
Confidence 34455888875321 011233 346777776 48999999999999999999776422 2355553
No 457
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=28.99 E-value=92 Score=22.37 Aligned_cols=31 Identities=6% Similarity=0.069 Sum_probs=26.2
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHHHhCCe
Q 023576 235 RGVHVNELSEQLKIPQKKIMDSIASLENEGL 265 (280)
Q Consensus 235 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~ 265 (280)
.++++.+++++++++.++|..=...+...|.
T Consensus 48 g~~s~~e~arry~Is~s~i~~W~r~~~~~G~ 78 (95)
T 2jrt_A 48 GLITEREALDRYSLSEEEFALWRSAVAAHGE 78 (95)
T ss_dssp TSSCHHHHHHHTTCCHHHHHHHHHHTTTCCT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhH
Confidence 3789999999999999999988877766553
No 458
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=28.75 E-value=1.2e+02 Score=20.76 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=40.1
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHHHHh--CCC--------HHHHHHHHHHHHhCCeeeec
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELSEQL--KIP--------QKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l--~~~--------~~~v~~al~~L~~eG~IYsT 269 (280)
....++|++.|.... ...|.+...|.+-+ ++. ...++.+|..|++.|.+-.+
T Consensus 5 P~y~~MI~eAI~~lk---er~GsS~~AIkKyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G~l~q~ 66 (78)
T 1uhm_A 5 KSYRELIIEGLTALK---ERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQP 66 (78)
T ss_dssp CCHHHHHHHHHHHHC---CSSCEEHHHHHHHHHTTSCTTTSSSTHHHHHHHHHHHHHHTTSEECC
T ss_pred CCHHHHHHHHHHHhc---cCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEec
Confidence 357788999888763 45799999998866 332 23499999999999998775
No 459
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=28.10 E-value=21 Score=29.48 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=34.6
Q ss_pred CccCHHHHHHHhC------CCHHHHHHHHHHHHhCCeeeecCCCcc
Q 023576 235 RGVHVNELSEQLK------IPQKKIMDSIASLENEGLIYSTIDEFH 274 (280)
Q Consensus 235 ~Gv~v~~I~~~l~------~~~~~v~~al~~L~~eG~IYsTiDd~h 274 (280)
.=+++++|+..++ +++++++-.|-.|+.+|.|=-.||-++
T Consensus 140 ~rI~l~~i~~~l~~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~ 185 (203)
T 3t5x_A 140 HQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQH 185 (203)
T ss_dssp SEEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTT
T ss_pred CcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCceEEEEcccc
Confidence 3689999999994 489999999999999999988777654
No 460
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.07 E-value=28 Score=31.68 Aligned_cols=39 Identities=18% Similarity=0.358 Sum_probs=35.7
Q ss_pred CCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 234 ERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 234 e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
..-++.++|++.|++++++|+..|-.++..|.|--.||.
T Consensus 305 ~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQ 343 (393)
T 4b4t_O 305 IRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQ 343 (393)
T ss_dssp CCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEET
T ss_pred CCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcC
Confidence 356999999999999999999999999999999888875
No 461
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=27.99 E-value=2e+02 Score=23.63 Aligned_cols=77 Identities=10% Similarity=0.129 Sum_probs=49.7
Q ss_pred CceeeeeHHHHhhcccCCCCCCCeEECCEEEeeEEEEEEEEEeee------cCCeeEEEEEcCCc---eEEEEEeccccc
Q 023576 40 QGLVPVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEE------RASDVNFTLDDGTG---RVVCKRWASEVF 110 (280)
Q Consensus 40 ~~~~PvtIkqi~~a~~~~~~~~~~~i~g~~i~~V~iVG~V~~~~~------~~t~~~~~LdDgTG---~I~~~~w~~~~~ 110 (280)
.....+.|++|+...... .|. + ....++|+|.+... ..+|..|+|.|=++ .|++-+|.+.-
T Consensus 34 ~~~k~~~l~~L~~~v~~~----~~~-e----~dwv~~GVV~~Ks~pk~~~~gk~y~~w~l~DL~~~~~~V~lfLFg~a~- 103 (200)
T 3ebe_A 34 NGRKLIRLAQLQNKIATE----KLE-E----EDWVTFGVIVKKITPQSSNNGKTFSIWRLNDLKDLDKYISLFLFGDVH- 103 (200)
T ss_dssp TTCEECCGGGHHHHHHTT----CST-T----SCEEEEEEEEEEECC-------CCEEEEEECSSSTTCCEEEEECHHHH-
T ss_pred cCCeEEeHHHHHhhccCC----CCC-c----CCEEEEEEEEecCCccCcCCCCeEEEEEEEecCCCCcEEEEEEechHH-
Confidence 456788899998754432 121 1 25667888877642 34688999987665 47777776543
Q ss_pred ChhhhccCCCCCEEEEEE
Q 023576 111 DTREMEAIQDGMYVRLIG 128 (280)
Q Consensus 111 ~~~~~~~~~~G~yVrV~G 128 (280)
.+...+++|+.|-|.-
T Consensus 104 --~~~~k~~~G~ViaiLN 119 (200)
T 3ebe_A 104 --KEHWKTDQGTVIGLLN 119 (200)
T ss_dssp --HHHTTCCTTEEEEEES
T ss_pred --HHhcCcCCceEEEEEC
Confidence 2345789999887763
No 462
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=27.87 E-value=61 Score=23.76 Aligned_cols=27 Identities=7% Similarity=0.174 Sum_probs=22.7
Q ss_pred CccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 235 RGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 235 ~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
+|.+.++|+++|+++...|...|..--
T Consensus 33 ~g~tQ~eIA~~lGiSR~~VsrlL~~Ar 59 (101)
T 2w7n_A 33 DGKPQATFATSLGLTRGAVSQAVHRVW 59 (101)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 499999999999999988877776544
No 463
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=27.73 E-value=22 Score=27.54 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=33.5
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCe
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGL 265 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~ 265 (280)
..+.+|+.++. .|.++.+|++.|+++...|..-+......|.
T Consensus 29 e~r~~ii~l~~--------~G~s~~~IA~~lgis~~TV~rwl~r~~~~G~ 70 (159)
T 2k27_A 29 VVRQRIVDLAH--------QGVRPCDISRQLRVSHGCVSKILGRYYETGS 70 (159)
T ss_dssp HHHHHHHHHHH--------HTCCHHHHHHHHTCCSHHHHHHHCCSSTTSC
T ss_pred HHHHHHHHHHH--------cCCCHHHHHHHHCcCHHHHHHHHHHHHhcCC
Confidence 35566777663 3789999999999999999999887766665
No 464
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=27.68 E-value=73 Score=29.60 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=31.1
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSI 257 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al 257 (280)
.|++-++.|+.+.--. ..++|.+.++|++.|+++...|++.+
T Consensus 375 ~L~ereR~VI~LRygL---~~~e~~TleEIAe~LgIS~erVRqi~ 416 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGL---IDGREHTLEEVGAYFGVTRERIRQIE 416 (438)
T ss_pred hCCHHHHHHHHHHHhc---cCCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 5677777777654322 12468999999999999999988654
No 465
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=27.45 E-value=51 Score=26.18 Aligned_cols=26 Identities=12% Similarity=0.436 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHhCCeeeecCCC
Q 023576 247 KIPQKKIMDSIASLENEGLIYSTIDE 272 (280)
Q Consensus 247 ~~~~~~v~~al~~L~~eG~IYsTiDd 272 (280)
+++...|..+|..|..+|.|-...++
T Consensus 34 ~~s~~~ly~~L~~Le~~GlI~~~~~~ 59 (179)
T 1yg2_A 34 KASHQQVYRELNKMGEQGLVTCVLEP 59 (179)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEECCC-
T ss_pred CCCcCcHHHHHHHHHHCCCeEEEeec
Confidence 58999999999999999999887543
No 466
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=27.39 E-value=1.6e+02 Score=20.62 Aligned_cols=68 Identities=4% Similarity=0.124 Sum_probs=45.0
Q ss_pred eeEEEEEEEEEeeecCCeeEEEEEcCCc--eEEEEEecccccChhhhccCCCCCEEEEEEEEe-eeCCeeEEE
Q 023576 71 TNVTLVGLVYNKEERASDVNFTLDDGTG--RVVCKRWASEVFDTREMEAIQDGMYVRLIGNLK-SFQGKKQIV 140 (280)
Q Consensus 71 ~~V~iVG~V~~~~~~~t~~~~~LdDgTG--~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~-~f~~~~~i~ 140 (280)
....+++.|+.+.....++.+.|.|.+- .+.+..|.+-.. +..+.|..+...-..--++ .|+++.|+.
T Consensus 13 qylsvlaqvvdiqssdknirlkicdnscnqelkvvifpdlcy--ewrdkfsinkwyyfnefvrqiyndevqlk 83 (109)
T 3u4z_A 13 QYLSVLAQVVDIQSSDKNIRLKICDNSCNQELKVVIFPDLCY--EWRDKFSINKWYYFNEFVRQIYNDEVQLK 83 (109)
T ss_dssp SEEEEEEEEEEEECCSSCEEEEEECSSCSSCEEEEECTTHHH--HHTTTCCTTCEEEEEEEEEEESSSCEEEE
T ss_pred HHHHHHHHHhhhhcCCCceEEEeecccccceeEEEEchhHHH--HHHhhcchhhhhhHHHHHHHHhhhHHhHh
Confidence 3467899999999999999999999875 588888865421 1234455555443333333 356665554
No 467
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=26.92 E-value=13 Score=30.25 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIAS 259 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~ 259 (280)
.|++.++.|+.+.. -.|.+..+|++.|++++..|+..+..
T Consensus 198 ~L~~~~r~vl~l~~-------~~g~s~~EIA~~lgis~~tV~~~~~r 237 (243)
T 1l0o_C 198 ELDERERLIVYLRY-------YKDQTQSEVASRLGISQVQMSRLEKK 237 (243)
T ss_dssp -----------------------------------------------
T ss_pred hCCHHHHHHHHHHH-------hcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 56777777777533 24899999999999999998876643
No 468
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=26.73 E-value=2e+02 Score=24.37 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=25.3
Q ss_pred hccCCCCCEEEEEEEEeeeCC-----------eeEEEEEEEeeCC
Q 023576 115 MEAIQDGMYVRLIGNLKSFQG-----------KKQIVAFSVRPVT 148 (280)
Q Consensus 115 ~~~~~~G~yVrV~G~l~~f~~-----------~~~i~~~~ir~v~ 148 (280)
.+.+++||.|.|.|.++.... +.+|.|.+|.++.
T Consensus 222 vd~~~PGDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~ 266 (268)
T 2vl6_A 222 VDSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQ 266 (268)
T ss_dssp TTSSCTTCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC-
T ss_pred cCcccCCCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEec
Confidence 356899999999999987542 2457777777654
No 469
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=26.69 E-value=91 Score=23.36 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=36.4
Q ss_pred CchhHHHHHHhcCCCCCCCCCccCHHHHH---HHh--CCCHHHHHHHHHHHHhCCe
Q 023576 215 KDCDQMILDYLQQPSSSERERGVHVNELS---EQL--KIPQKKIMDSIASLENEGL 265 (280)
Q Consensus 215 ~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~---~~l--~~~~~~v~~al~~L~~eG~ 265 (280)
...-..|++.||.- =.+||+-.+=. .-| .+++++|.+.+..|..+|+
T Consensus 7 ~~~l~siv~WLRAG----YP~GVP~~Dy~PLLALL~r~Ltdeev~~Va~~L~~~~~ 58 (112)
T 2lky_A 7 NAFLAKIAAWLNAG----YPEGVPGPDRVPLLALLTRRLTNDEIKAIAEDLEKRAH 58 (112)
T ss_dssp CHHHHHHHHHHHHH----CSSCCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHcc----CCCCCCCcchHHHHHHHcccCCHHHHHHHHHHHHHcCC
Confidence 34667799999873 24699887654 444 4999999999999999997
No 470
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=26.50 E-value=1.3e+02 Score=23.96 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=26.2
Q ss_pred EeeEEEEEEEEEeeec------CCeeEEEEEcCCceEEEEEec
Q 023576 70 ITNVTLVGLVYNKEER------ASDVNFTLDDGTGRVVCKRWA 106 (280)
Q Consensus 70 i~~V~iVG~V~~~~~~------~t~~~~~LdDgTG~I~~~~w~ 106 (280)
+..++|=|.|+.+... .=.+.-.|+|||+.++|.+=.
T Consensus 37 ~~~~kVKafI~tl~~~l~~~~~~W~l~a~IsDGS~~LdV~f~~ 79 (157)
T 3mxn_A 37 VTTVKVKAFIVTLTGNLSSSGGIWSITAKVSDGTAYLDVDFVD 79 (157)
T ss_dssp CEEEEEEEEEEEECSCCBCGGGSCBCEEEEECSSCEEEEEECH
T ss_pred ceEEEEEEEEEEeccceeecCCEEEEEEEEeCCceeEEEEeeH
Confidence 4557777777776431 126777999999999998744
No 471
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=26.45 E-value=1.1e+02 Score=22.76 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=37.0
Q ss_pred EEcCCceEEEEEecccccChhhhccCCCCCEEEEEEEEeeeCCeeEEEEEEEeeCCCchHH
Q 023576 93 LDDGTGRVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGKKQIVAFSVRPVTNFDEV 153 (280)
Q Consensus 93 LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f~~~~~i~~~~ir~v~d~Nei 153 (280)
|.+|+=+|++|..+.. ...+++||.+.. + ..+..+.+..|+.-++|.++
T Consensus 15 I~~G~KtiEiRlnd~k------~~~ikvGD~I~f-----~-~~~l~~~V~~v~~Y~sF~~l 63 (109)
T 2z0t_A 15 IKAGKKKIEGRLYDEK------RRQIKPGDIIIF-----E-GGKLKVKVKGIRVYSSFKEM 63 (109)
T ss_dssp HHTTSCCEEEEECCTT------GGGCCTTCEEEE-----G-GGTEEEEEEEEEEESCHHHH
T ss_pred HHcCCCEEEEEecchh------hhcCCCCCEEEE-----C-CCEEEEEEEEEEccCCHHHH
Confidence 3456668999977553 567999999988 1 23678888899999998775
No 472
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=26.23 E-value=62 Score=21.39 Aligned_cols=20 Identities=10% Similarity=0.199 Sum_probs=9.3
Q ss_pred CHHHHHHHhCCCHHHHHHHH
Q 023576 238 HVNELSEQLKIPQKKIMDSI 257 (280)
Q Consensus 238 ~v~~I~~~l~~~~~~v~~al 257 (280)
++.||++.++++...|..+|
T Consensus 2 T~~diA~~aGVS~sTVSrvL 21 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVI 21 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 34455555554444444433
No 473
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=25.86 E-value=72 Score=27.31 Aligned_cols=40 Identities=10% Similarity=0.055 Sum_probs=30.9
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIAS 259 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~ 259 (280)
.|++.++.|+.+-.- +|.+..+|+..+++++..|+..+..
T Consensus 111 ~Lp~~~R~v~~L~~~-------eg~s~~EIA~~lgis~~tVks~l~r 150 (286)
T 3n0r_A 111 RIAPRSRQAFLLTAL-------EGFTPTEAAQILDCDFGEVERLIGD 150 (286)
T ss_dssp HHSCHHHHHHHHHHT-------TCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hCCHHHeeEEEEEee-------CCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 467778888765443 4999999999999999888765543
No 474
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=25.52 E-value=15 Score=33.28 Aligned_cols=7 Identities=29% Similarity=0.325 Sum_probs=0.0
Q ss_pred CCCceee
Q 023576 38 DSQGLVP 44 (280)
Q Consensus 38 ~~~~~~P 44 (280)
..+...|
T Consensus 310 ~~~~~~~ 316 (358)
T 2pk2_A 310 GGQEARP 316 (358)
T ss_dssp -------
T ss_pred CCCCCcc
Confidence 4445555
No 475
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=25.19 E-value=81 Score=25.78 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=34.9
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHh-----CCCHHHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQL-----KIPQKKIMDSIASLE 261 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-----~~~~~~v~~al~~L~ 261 (280)
.|+....+||.+|-.. ...+++.++|++.+ ..++..|+..+..|-
T Consensus 176 ~LT~rE~~iL~~l~~~----~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr 225 (250)
T 3r0j_A 176 SLSPTEFTLLRYFVIN----AGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLR 225 (250)
T ss_dssp CCCHHHHHHHHHHHHT----TTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHC----CCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHH
Confidence 5888899999998764 35699999999998 357777776665554
No 476
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=25.18 E-value=1.1e+02 Score=24.18 Aligned_cols=43 Identities=2% Similarity=0.100 Sum_probs=33.5
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIA 258 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~ 258 (280)
++++.|++|++.|++-+ ..+=++..+||+.++.+...|-.|+.
T Consensus 68 g~t~fq~~V~~~l~~IP---~G~~~tYg~iA~~~g~p~RaVG~A~~ 110 (156)
T 1wrj_A 68 PFNEFRIRVFKEVMRIK---WGEVRTYKQVADAVKTSPRAVGTALS 110 (156)
T ss_dssp TSCHHHHHHHHHHTTSC---TTCCEEHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCC---CCceEcHHHHHHHhCCCccHHHHHHH
Confidence 34789999999999864 33467999999999988755666654
No 477
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.18 E-value=1.2e+02 Score=22.21 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=35.8
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhC--CCHHHHHHHHHHHHhCCeeeecCC
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLK--IPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~--~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
.++..|..+++.... -..---+.+++++|. .+...|+++++.|++-.+|=-.-|
T Consensus 31 ~iqAaIVRIMK~rK~--l~h~~Lv~eV~~ql~F~p~~~~IKk~IE~LIereYleR~~~ 86 (101)
T 2do7_A 31 QIDAAIVRIMKMRKT--LSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYMERDKE 86 (101)
T ss_dssp HHHHHHHHHHHHSSE--EEHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred HHHHHHHHHHhhccc--ccHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhHHhcCCC
Confidence 377778888886421 011112345555554 777889999999999998887543
No 478
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=25.07 E-value=1.2e+02 Score=21.61 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=37.7
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhC----CCHHHHHHHHHHHHhCCeeeecCC
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQLK----IPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~----~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
-..++..|..+++.... -..---+.+++++|. .+...|++.|+.|++-.+|=-.-|
T Consensus 24 ~~~i~AaIVRIMK~rK~--l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~ 83 (92)
T 1iuy_A 24 KHEIEAAIVRIMKSRKK--MQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPE 83 (92)
T ss_dssp TTHHHHHHHHHHHHHCE--EEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred HHHeeeeeeehhhcccc--ccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCC
Confidence 34588888888886421 011112355556653 677889999999999998877543
No 479
>3bz6_A UPF0502 protein pspto_2686; APC84902, conserved domain, pseudomonas syringae PV. tomato DC3000, structural genomics, PSI-2; 2.21A {Pseudomonas syringae PV} SCOP: a.4.5.75 a.4.5.75
Probab=24.67 E-value=58 Score=26.49 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=43.4
Q ss_pred CCCchhHHHHHHhcCCCCCCCC-CccCHHHHHHHhC----------CCHHHHHHHHHHHHhCCeeeec
Q 023576 213 GLKDCDQMILDYLQQPSSSERE-RGVHVNELSEQLK----------IPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e-~Gv~v~~I~~~l~----------~~~~~v~~al~~L~~eG~IYsT 269 (280)
.|+.+...||-+|=+.....++ =-++.+-+...|+ +++.+|.++|+.|..-+.+...
T Consensus 21 ~Ls~~E~RVlG~LiEK~~TTPd~YPLsLNaL~~aCNQKsnR~PVm~l~e~eV~~ald~L~~~~lv~~~ 88 (183)
T 3bz6_A 21 QLNSTEVRILGCLIEKQATNPETYPLTLNALVIACNQKTSRDPVMNLTQGQVGQSLRALEGRGLTRLV 88 (183)
T ss_dssp CBCHHHHHHHHHHHHHHHHCGGGCSEEHHHHHHHHTCSSSCSSCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHhhhhhcccCCCcCcchHHHHHHHhccccccCccccCCHHHHHHHHHHHHHCCCeEee
Confidence 4788999999988543111122 3568888887772 9999999999999999999765
No 480
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=24.65 E-value=24 Score=26.12 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=28.2
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDS 256 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~a 256 (280)
.|++..++|.++|-++.. .-..+++.+||++++.++..|-.-
T Consensus 18 ~ls~~e~~ia~yil~~~~--~~~~~si~elA~~~~vS~aTv~Rf 59 (111)
T 2o3f_A 18 XLPPSERKLADYILAHPH--XAIESTVNEISALANSSDAAVIRL 59 (111)
T ss_dssp GSCHHHHHHHHHHHHCHH--HHHTCCHHHHHHHTTCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHChH--HHHhcCHHHHHHHHCCCHHHHHHH
Confidence 578888899998876521 113568888887777666655433
No 481
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=24.62 E-value=71 Score=21.59 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=24.5
Q ss_pred HHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHH
Q 023576 219 QMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDS 256 (280)
Q Consensus 219 ~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~a 256 (280)
..|...++. .|++..+++++++++...|..+
T Consensus 12 ~ri~~~l~~-------~glT~~~LA~~~Gvs~stls~~ 42 (74)
T 1neq_A 12 ADVIAGLKK-------RKLSLSALSRQFGYAPTTLANA 42 (74)
T ss_dssp HHHHHHHHT-------TSCCHHHHHHHHSSCHHHHHHT
T ss_pred HHHHHHHHH-------cCCCHHHHHHHHCcCHHHHHHH
Confidence 456666663 4899999999999998888765
No 482
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=24.60 E-value=61 Score=28.32 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=28.7
Q ss_pred CCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHH
Q 023576 214 LKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIM 254 (280)
Q Consensus 214 l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~ 254 (280)
.......||++|++++ =.+-++|+++|+++.++|.
T Consensus 181 idekeerileilrenp------wtphdeiarrlglsvseve 215 (519)
T 2csb_A 181 IDEKEERILEILRENP------WTPHDEIARRLGLSVSEVE 215 (519)
T ss_dssp CCHHHHHHHHHHHHCT------TCCHHHHHHHHTCCHHHHH
T ss_pred CChHHHHHHHHHhcCC------CCChHHHHHHhCCchhhhc
Confidence 4567788999999864 3478999999999998875
No 483
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1
Probab=24.39 E-value=51 Score=21.11 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=23.3
Q ss_pred cCHHHHHHHhCCCHHHHHHH-HHHHHhCCee
Q 023576 237 VHVNELSEQLKIPQKKIMDS-IASLENEGLI 266 (280)
Q Consensus 237 v~v~~I~~~l~~~~~~v~~a-l~~L~~eG~I 266 (280)
+++.+|++.|+.+++.|.+- +.+|-..|.|
T Consensus 12 ~Nf~~Ia~~L~R~p~hv~ky~~~ELGt~g~i 42 (52)
T 1k8b_A 12 RNFRELAKAVNRDEEFFAKYLLKETGSAGNL 42 (52)
T ss_dssp CCHHHHHHHHHTCHHHHHHHHHHHHSSEEEE
T ss_pred ECHHHHHHHHCCCHHHHHHHHHHHhCCCeee
Confidence 47899999999999887766 4477776655
No 484
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=24.03 E-value=1.2e+02 Score=22.25 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=41.9
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeecCC
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYSTID 271 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiD 271 (280)
.+...|++..+.. ..+-+++.++.+.|.-+...|.....||..=|.|=--+|
T Consensus 51 ~iRN~iI~~yr~n----P~~yLT~t~~r~~l~gDv~~i~RVh~FLe~wGLIN~~v~ 102 (104)
T 2fq3_A 51 RYRNFMVNSYRLN----PNEYFSVTTARRNVSGDAAALFRLHKFLTKWGLINYQVD 102 (104)
T ss_dssp HHHHHHHHHHHHC----TTSCCCHHHHHHHSCSCHHHHHHHHHHHHHTTSSSSCC-
T ss_pred HHHHHHHHHHHhC----CceeeeHHHHHHHccccHHHHHHHHHHHHHcCeeccCCC
Confidence 3677788888875 346899999999998799999999999999998844333
No 485
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=23.92 E-value=58 Score=30.32 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=36.9
Q ss_pred hHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeee
Q 023576 218 DQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIY 267 (280)
Q Consensus 218 ~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IY 267 (280)
+..+|.+|.-. +---++-+||++++++..++..+++.|.+.|+|=
T Consensus 389 ~~~~l~~L~~~-----dG~~slldia~~~~~~~~~~~~~~~~l~~~~l~~ 433 (435)
T 3k9t_A 389 EFAMFWVLNMS-----DGKNSLLDIAYKSGMEFRRIKYAADALYRVELLK 433 (435)
T ss_dssp HHHHHHHHHHC-----EEEEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhc-----cCCccHHHHHHHhCcCHHHHHHHHHHHHHccCcc
Confidence 45577777652 3345899999999999999999999999999874
No 486
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=23.42 E-value=69 Score=25.44 Aligned_cols=45 Identities=29% Similarity=0.372 Sum_probs=33.8
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhC-----CCHHHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLK-----IPQKKIMDSIASLE 261 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~-----~~~~~v~~al~~L~ 261 (280)
.|++-..+||.+|.+. ....++.++|++.+. .++..|+..+..|.
T Consensus 151 ~Lt~rE~~vL~~l~~~----~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~ 200 (225)
T 1kgs_A 151 DLTKKEYQILEYLVMN----KNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLR 200 (225)
T ss_dssp CCCHHHHHHHHHHHHT----TTSCEEHHHHHHHCC-----CHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHhC----CCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHH
Confidence 4788889999998763 234699999999996 67776666655543
No 487
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=23.12 E-value=2.2e+02 Score=20.62 Aligned_cols=63 Identities=16% Similarity=0.311 Sum_probs=41.5
Q ss_pred eeEEEEEEEEEeeecC-----CeeEEEEEcCCc----eEEEEEecccccChhhhccCCCCCEEEEEEEEeeeCCe
Q 023576 71 TNVTLVGLVYNKEERA-----SDVNFTLDDGTG----RVVCKRWASEVFDTREMEAIQDGMYVRLIGNLKSFQGK 136 (280)
Q Consensus 71 ~~V~iVG~V~~~~~~~-----t~~~~~LdDgTG----~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~~f~~~ 136 (280)
.+|.+-|.|+.++..+ -|+..+.-|.-. ++...+=.. .+.+.+.+..|....|+|.+...++.
T Consensus 50 kwvkvrgvivdirrksgiagsyyfivtmrdeqnktdkrltfnfgsh---nsadvealsngsvativgqvhqvqds 121 (133)
T 3f1z_A 50 KWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSH---NSADVEALSNGSVATIVGQVHQVQDS 121 (133)
T ss_dssp CEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCSCSCCEEEEEEGG---GHHHHTTCCTTSEEEEEEECCCCCSB
T ss_pred ceEEEEEEEEEeeeccCccceEEEEEEeeccccCccceEEEeccCC---cchhhHhhcCCceeeEeeeeeeeecc
Confidence 4678888898886532 366667777433 233222211 12456789999999999999877765
No 488
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=22.45 E-value=61 Score=29.36 Aligned_cols=44 Identities=9% Similarity=0.088 Sum_probs=35.4
Q ss_pred HHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 220 MILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 220 ~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.++++|.+. .-++++++++.++.+...++..|..|++.|.|-.+
T Consensus 301 ~ll~~l~~~------p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~~ 344 (373)
T 3eqx_A 301 ELVQVIFEQ------PYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEV 344 (373)
T ss_dssp HHHHHHHHC------SEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC
T ss_pred HHHHHHHHC------CCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEEe
Confidence 455555432 24788999999999999999999999999998664
No 489
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=22.27 E-value=74 Score=30.20 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 219 QMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 219 ~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
.+|+++|.... -+.-++|++...++..++|+.|-.|..+|.|..
T Consensus 363 ~RI~r~L~~~~------~l~d~~ia~~a~i~~k~vR~~Ly~L~~~g~v~~ 406 (534)
T 2xub_A 363 ARIFRLVLQKK------HIEQKQVEDFAMIPAKEAKDMLYKMLSENFMSL 406 (534)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHCSCHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHcC------CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEE
Confidence 45677776531 378899999999999999999999999999753
No 490
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A
Probab=22.10 E-value=2.4e+02 Score=20.76 Aligned_cols=80 Identities=16% Similarity=0.316 Sum_probs=49.0
Q ss_pred eeeHHHHhhcccCCCCCCCeEECCEEEeeEEEEEEEEEeeecCCeeEEEEEcCCceEEEEEecccccChhhhccCCCCCE
Q 023576 44 PVTVKMISEASHSGDDKSNFMINGLEITNVTLVGLVYNKEERASDVNFTLDDGTGRVVCKRWASEVFDTREMEAIQDGMY 123 (280)
Q Consensus 44 PvtIkqi~~a~~~~~~~~~~~i~g~~i~~V~iVG~V~~~~~~~t~~~~~LdDgTG~I~~~~w~~~~~~~~~~~~~~~G~y 123 (280)
=+.++||-.... + ..|+++|.|.+-. .-.++|.+.--++.|-+-.--+ .. .++.|..
T Consensus 9 L~~Ls~lp~~~~-G-------------~KVRFLGCV~sY~----tg~L~Le~~~~~v~VDV~lvL~----~l-~~~vGeW 65 (105)
T 3kf6_B 9 LIFINQINDCKD-G-------------QKLRFLGCVQSYK----NGILRLIDGSSSVTCDVTVVLP----DV-SIQKHEW 65 (105)
T ss_dssp ECCGGGGGGSCT-T-------------CEEEEEEEEEEEE----TTEEEEEETTEEEEEECTTSCC----SS-CCCTTCE
T ss_pred EeehhhccCCCC-C-------------CEEEEEEEeeeec----cEEEEEccCCcEEEEEHHHhhc----hh-eeecccE
Confidence 356777765522 1 5789999999877 2356666432233333221111 12 7899999
Q ss_pred EEEEEEEeeeCCeeEEEEEEEeeCCC
Q 023576 124 VRLIGNLKSFQGKKQIVAFSVRPVTN 149 (280)
Q Consensus 124 VrV~G~l~~f~~~~~i~~~~ir~v~d 149 (280)
|-|+|-++.- ..+.+.-+.+.-.
T Consensus 66 vNVvGYir~~---v~VqAl~lwsAG~ 88 (105)
T 3kf6_B 66 LNIVGRKRQD---GIVDVLLIRSAVG 88 (105)
T ss_dssp EEEEEEEEET---TEEEEEEEEECTT
T ss_pred EEEEEEEecC---cEEEEEEEeecCC
Confidence 9999999983 4555555555433
No 491
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=21.99 E-value=48 Score=24.34 Aligned_cols=47 Identities=11% Similarity=0.199 Sum_probs=34.0
Q ss_pred CCCchhHHHHHHhcCCCCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHH
Q 023576 213 GLKDCDQMILDYLQQPSSSERERGVHVNELSEQLKIPQKKIMDSIASLE 261 (280)
Q Consensus 213 ~l~~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~v~~al~~L~ 261 (280)
.|++..++|.++|-++.. .-.-+++.+||+.++.++..|-.-+..|-
T Consensus 14 ~lt~~e~~ia~yil~~~~--~~~~~si~elA~~~~vS~aTv~Rf~kkLG 60 (107)
T 3iwf_A 14 YFTKNEKKIAQFILNYPH--KVVNMTSQEIANQLETSSTSIIRLSKKVT 60 (107)
T ss_dssp GSCHHHHHHHHHHHHCHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHhCHH--HHHHCCHHHHHHHHCCCHHHHHHHHHHhC
Confidence 577888899998877531 12467999999998888887766555543
No 492
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=21.75 E-value=2.8e+02 Score=21.48 Aligned_cols=68 Identities=4% Similarity=0.124 Sum_probs=46.1
Q ss_pred eeEEEEEEEEEeeecCCeeEEEEEcCCc--eEEEEEecccccChhhhccCCCCCEEEEEEEEe-eeCCeeEEE
Q 023576 71 TNVTLVGLVYNKEERASDVNFTLDDGTG--RVVCKRWASEVFDTREMEAIQDGMYVRLIGNLK-SFQGKKQIV 140 (280)
Q Consensus 71 ~~V~iVG~V~~~~~~~t~~~~~LdDgTG--~I~~~~w~~~~~~~~~~~~~~~G~yVrV~G~l~-~f~~~~~i~ 140 (280)
....+++.|+.+.....++.+.|.|.+- .+.+..|.+-.. +..+.+..+...-..--++ .|+++.++.
T Consensus 131 qylsvlaqvvdiqssdknirlkicdnscnqelkvvifpdlcy--ewrdkfsinkwyyfnefvrqiyndevqlk 201 (213)
T 3u58_A 131 QYLSVLAQVVDIQSSDKNIRLKICDNSCNQELKVVIFPDLCY--EWRDKFSINKWYYFNEFVRQIYNDEVQLK 201 (213)
T ss_dssp SEEEEEEEEEEEEECSSCEEEEEECTTCSCCEEEEECTTTTG--GGTTCCCTTCEEEEEEEEECCSSSSCEEE
T ss_pred HHHHHHHHhhccccCCCceEEEeecccccceeEEEEchhHhh--HhhhhcchhhhhhHHHHHHHHhhhhhhhh
Confidence 3467899999999999999999999875 588888876542 2234555555444433333 355655553
No 493
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=21.69 E-value=74 Score=23.49 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=34.4
Q ss_pred chhHHHHHHhcCCCCCCCCCccCHHHHH---HHh--CCCHHHHHHHHHHHHhCCe
Q 023576 216 DCDQMILDYLQQPSSSERERGVHVNELS---EQL--KIPQKKIMDSIASLENEGL 265 (280)
Q Consensus 216 ~~~~~Vl~~i~~~~~~~~e~Gv~v~~I~---~~l--~~~~~~v~~al~~L~~eG~ 265 (280)
..-..|++.||.- =.+||+-.+=. .-| .+++++|.+.+..|..+|.
T Consensus 6 ~~l~siv~WLRaG----YP~GVP~~Dy~PLlALL~r~Ltdeev~~Va~~L~~~~~ 56 (103)
T 2kvc_A 6 RFLTSIVAWLRAG----YPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGD 56 (103)
T ss_dssp HHHHHHHHHHHHH----CTTCCCHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcc----CCCCCCCcchHHHHHHHhccCCHHHHHHHHHHHHHcCC
Confidence 3456788888863 24688876644 334 4999999999999999986
No 494
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=21.66 E-value=47 Score=24.97 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=21.4
Q ss_pred chhHHHHH----HhcCCCCCCCCCccCHHHHHHHhCCCHHH
Q 023576 216 DCDQMILD----YLQQPSSSERERGVHVNELSEQLKIPQKK 252 (280)
Q Consensus 216 ~~~~~Vl~----~i~~~~~~~~e~Gv~v~~I~~~l~~~~~~ 252 (280)
+-+++|++ ++.+. .-.++++++|+++.+++...
T Consensus 4 ~~r~~Il~aa~~l~~~~----G~~~~t~~~Ia~~agvs~~t 40 (170)
T 3egq_A 4 DQSVRIIEAALRLYMKK----PPHEVSIEEIAREAKVSKSL 40 (170)
T ss_dssp HHHHHHHHHHHHHHTTS----CGGGCCHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHhc----CCccCcHHHHHHHhCCCchh
Confidence 34445544 56553 34589999999998755443
No 495
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=21.63 E-value=37 Score=29.92 Aligned_cols=31 Identities=13% Similarity=0.347 Sum_probs=27.4
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHhCCeeee
Q 023576 238 HVNELSEQLKIPQKKIMDSIASLENEGLIYS 268 (280)
Q Consensus 238 ~v~~I~~~l~~~~~~v~~al~~L~~eG~IYs 268 (280)
|+.+.++.++++++|.+.++++|..-|++.+
T Consensus 42 hlh~~~re~~lT~~E~~~~i~~l~~~G~~~~ 72 (293)
T 1tmx_A 42 HLHAFLREVRLTEAEWETGIGFLTDAGHVTN 72 (293)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhhhccc
Confidence 5667778888999999999999999999874
No 496
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=21.58 E-value=1.2e+02 Score=19.03 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=16.4
Q ss_pred CccCHHHHHHHhCCCHHHHHHH
Q 023576 235 RGVHVNELSEQLKIPQKKIMDS 256 (280)
Q Consensus 235 ~Gv~v~~I~~~l~~~~~~v~~a 256 (280)
.|++..++++.++++...|...
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~ 36 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLI 36 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHH
Confidence 4788888888888887666543
No 497
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=21.55 E-value=38 Score=29.77 Aligned_cols=32 Identities=13% Similarity=0.352 Sum_probs=28.1
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 238 HVNELSEQLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 238 ~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
|+.+.++.++++++|.+.++++|..-|++.+-
T Consensus 38 hlh~f~re~~lT~~Ew~~~i~fL~~~G~~~~~ 69 (290)
T 3n9t_A 38 HLHDFVSEVELTEQEWFEGIRFLTATGQKCDG 69 (290)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhhhcCc
Confidence 66777888899999999999999999998653
No 498
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=21.50 E-value=42 Score=29.91 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=42.1
Q ss_pred hhHHHHHHhcCC-CCCCCCCccCHHHHHHHhC-CCH---HHHHHHHHHHHhCCeeeecC----C---Ccccccc
Q 023576 217 CDQMILDYLQQP-SSSERERGVHVNELSEQLK-IPQ---KKIMDSIASLENEGLIYSTI----D---EFHYKFA 278 (280)
Q Consensus 217 ~~~~Vl~~i~~~-~~~~~e~Gv~v~~I~~~l~-~~~---~~v~~al~~L~~eG~IYsTi----D---d~hfk~t 278 (280)
++..|++.|.+. + .+..++.++|+++++ ..+ .-++..|+.|...|.+-.+. | ++.|..|
T Consensus 42 ~~Lglfd~L~~~~g---p~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t 112 (368)
T 3reo_A 42 IELDVLEIMAKSVP---PSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLA 112 (368)
T ss_dssp HHTTHHHHHHHHCC---TTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEEC
T ss_pred HHCCchhHHhhcCC---CCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEecccCCCCcccceeCcC
Confidence 445578888652 1 123589999999996 233 36899999999999987752 2 3578766
No 499
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=21.46 E-value=1.5e+02 Score=20.44 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=26.5
Q ss_pred hhHHHHHHhcCCCCCCCCCccCHHHHHHHh-CCCHHHHHHHHH
Q 023576 217 CDQMILDYLQQPSSSERERGVHVNELSEQL-KIPQKKIMDSIA 258 (280)
Q Consensus 217 ~~~~Vl~~i~~~~~~~~e~Gv~v~~I~~~l-~~~~~~v~~al~ 258 (280)
-..+||+++-..- .....+.++.|+++. ||+-.+|...+.
T Consensus 5 ~R~~Il~~~~~~~--~~~~dvdl~~lA~~t~G~SGADl~~l~~ 45 (88)
T 3vlf_B 5 GRANIFRIHSKSM--SVERGIRWELISRLCPNSTGAELRSVCT 45 (88)
T ss_dssp HHHHHHHHHHTTS--CBCSCCCHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCC--CCCCccCHHHHHHHcCCCcHHHHHHHHH
Confidence 4556777654432 123468889998887 688888776554
No 500
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=21.42 E-value=76 Score=27.44 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=36.8
Q ss_pred hhHHHHHHh----cCCCCCCCCCccCHHHHHH---HhCCCHHHHHHHHHHHHhCCeeeec
Q 023576 217 CDQMILDYL----QQPSSSERERGVHVNELSE---QLKIPQKKIMDSIASLENEGLIYST 269 (280)
Q Consensus 217 ~~~~Vl~~i----~~~~~~~~e~Gv~v~~I~~---~l~~~~~~v~~al~~L~~eG~IYsT 269 (280)
.+..|+.++ ... ...+.+..+++ .|++++..||.||..|..+|.|-+.
T Consensus 24 a~Sli~tl~Gd~~~~~-----g~~i~~~~Li~l~~~~Gi~~~avR~Al~RL~~~G~l~~~ 78 (266)
T 3l09_A 24 LWSVLVTCLGDVSRDG-----VIEVSGVALSSFVERMGLQPQAMRVALHRLKRDGWVESR 78 (266)
T ss_dssp HHHHHHHHHHHHHHTT-----CCCEEHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hhHHHHHHHHHHhccC-----CCcccHHHHHHHHHHcCCCchHHHHHHHHHHHCCCeeee
Confidence 456677766 432 33688888665 4589999999999999999999765
Done!