Query 023577
Match_columns 280
No_of_seqs 128 out of 157
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:05:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3345 Uncharacterized conser 100.0 8.6E-71 1.9E-75 493.2 11.1 255 7-275 4-274 (275)
2 PF07052 Hep_59: Hepatocellula 100.0 5.7E-35 1.2E-39 235.9 6.0 97 95-191 1-104 (104)
3 KOG1664 Vacuolar H+-ATPase V1 19.9 61 0.0013 29.9 1.5 14 108-121 11-24 (220)
4 KOG1891 Proline binding protei 17.2 81 0.0018 29.6 1.7 45 160-220 65-109 (271)
5 TIGR00061 L21 ribosomal protei 16.6 55 0.0012 26.6 0.4 14 6-19 73-86 (101)
6 CHL00075 rpl21 ribosomal prote 13.4 76 0.0016 26.1 0.4 14 6-19 76-89 (108)
7 PRK05573 rplU 50S ribosomal pr 12.3 84 0.0018 25.5 0.4 14 6-19 74-87 (103)
8 PRK12278 50S ribosomal protein 10.7 1E+02 0.0022 28.5 0.4 14 6-19 74-87 (221)
9 PRK05340 UDP-2,3-diacylglucosa 10.4 1.5E+02 0.0032 26.6 1.4 22 258-279 117-138 (241)
10 TIGR01615 A_thal_3542 uncharac 9.4 2.5E+02 0.0054 24.0 2.3 50 160-217 71-122 (131)
No 1
>KOG3345 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.6e-71 Score=493.22 Aligned_cols=255 Identities=41% Similarity=0.589 Sum_probs=208.7
Q ss_pred ccccccccccccCCcchhhccCCCCchHHHHhhcHHHHHHHHHhhccCCCccccccccccccc--------cCCCccccc
Q 023577 7 QKKEKKKNFRKRSYEEEEETTNKLSDDEEERRLALEEIKFLQKQRERKSGIPAIPSALQSAAA--------AGGGGLTKV 78 (280)
Q Consensus 7 ~~~kkkKn~RkR~~~~d~e~~~~~~e~eee~~~~lee~kelQklR~R~~GI~a~~la~g~~~~--------~~gg~~~~~ 78 (280)
.|+|.+..+++|...++++.. ++++++.++.|+||++||+||.|++||+.+.|++|.+.+ .+||++.+.
T Consensus 4 ~frk~~~k~~~rk~l~~~~~~---~eEeeerrl~leeikelQrlReRknGvs~v~lavgeeala~~d~~qm~~Ggmv~~k 80 (275)
T KOG3345|consen 4 IFRKVKFKIQKRKNLEDDDVA---AEEEEERRLALEEIKELQRLRERKNGVSEVELAVGEEALALEDPFQMKTGGMVDMK 80 (275)
T ss_pred chhhhHHHHHHhhcchhhhhh---hhhHHHHHhhHHHHHHHHHHHhccCCcchhhhhhhhhhhhccCchhcccCcceehH
Confidence 344555556666654444422 566778899999999999999999999999999997433 277776655
Q ss_pred ccccCCCC-cchhhhhhccchhcccccccchhHHHHHHHHHHHhhCCCCCCCccccccccchhHhhhcCchhhh----hc
Q 023577 79 SEKNEGDG-EKDELVLQDTFAQETAVMVEDPNMLKYVEQELAKKRGKNIDVNDRVENDLKHAEDELYKIPEHLK----KR 153 (280)
Q Consensus 79 ~~k~~~~~-e~~~~~l~~~Ft~eT~~~deD~hMmkYIE~eLakRk~~~~~~~~~~~~~~~~~~~~Ly~~pe~l~----kr 153 (280)
..+..+.. ..+.-+|+.+|+++|+.+|+|++||+|||++|+||+|..+.+.+.+...+++++||||.+|+||+ ++
T Consensus 81 K~k~~~mkeas~eqdlgtqFs~ET~~rdEdeem~KYIeqeLqkrkg~~~~e~eeqk~k~~naED~Ly~lpdhlk~ssskk 160 (275)
T KOG3345|consen 81 KLKERGMKEASEEQDLGTQFSAETNRRDEDEEMMKYIEQELQKRKGTSIVEHEEQKNKPKNAEDCLYELPDHLKVSSSKK 160 (275)
T ss_pred HhhhhhhhHHHHhhhhhHHHHHHHhcccccHHHHHHHHHHHHHhhccchhhhhhhhcccCCHHHHHHhhhhhhccccccc
Confidence 55433322 22333589999999999999999999999999999998888887888999999999999999999 79
Q ss_pred cccccccccccCCccccCChHHHhhcHHHHHHHHHHHHHHHhccCCCCCCCCCCccchhhhhcchhhHHHHHhhCccccc
Q 023577 154 NSEESSTQWTTGIAEVQLPIEYKLKNIEETEAAKKLLQEKRLMGRAKSDFSIPSSYSADYFQRGRDYAEKLRREHPELYK 233 (280)
Q Consensus 154 ~~e~~s~~~lsgI~EVDLGieaKlkNIe~TE~AKr~L~e~~~~~~~~~~~~~p~n~a~n~~qh~r~~~~~~~~~~~~~~~ 233 (280)
++||+|+|||+|||||||||++||+||++||+|||+|+++++++++++++|||+||+||||||+|||++.+.+. +
T Consensus 161 s~EmlS~qml~GIpEVdLgI~~kikNI~eTE~aKrlLqe~~~~~~~g~~~~ipt~~a~ny~qr~rf~~e~~~~~-r---- 235 (275)
T KOG3345|consen 161 SEEMLSNQMLSGIPEVDLGIDAKIKNIEETEDAKRLLQEQQNKKKDGETSFIPTNMAVNYVQRNRFYHEELNRD-R---- 235 (275)
T ss_pred hHHHHHHHHHcCCcccccchhhhhhhHHhhHHHHHHHHHHHhccCCCCCCCCccchhhhHHHhhhhhHHHhccc-h----
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998652 1
Q ss_pred ccCCCCCCCCCCCCCCC---CCCCCCCCCcchHHHHHHHHHHHHh
Q 023577 234 DRGSQDDGAGSRPTDNS---TDAAGSRQAATDQFMLERFRKRERH 275 (280)
Q Consensus 234 ~~~~~~~~~~~~~~~~~---~~~~~~~~~ATDd~~~erFrK~~r~ 275 (280)
..++ ..+.++. +..++.+++||||||||||||++|+
T Consensus 236 -----~~d~-e~~ep~~s~~~~~np~~~~atddyhyekfrk~~rr 274 (275)
T KOG3345|consen 236 -----QADT-EKAEPSTSPSTNNNPDRQAATDDYHYEKFRKRERR 274 (275)
T ss_pred -----hccc-cccCCCCCccccCChhhhhhhhHHHHHHHHHHhcc
Confidence 1111 1222222 2234569999999999999999994
No 2
>PF07052 Hep_59: Hepatocellular carcinoma-associated antigen 59; InterPro: IPR010756 This family represents a conserved region approximately 100 residues long within mammalian hepatocellular carcinoma-associated antigen 59 and similar proteins. Family members are found in a variety of eukaryotes, mainly as hypothetical proteins.
Probab=100.00 E-value=5.7e-35 Score=235.87 Aligned_cols=97 Identities=48% Similarity=0.694 Sum_probs=84.6
Q ss_pred ccchhcccccccchhHHHHHHHHHHHhhCCCCCC------CccccccccchhHhhhcCchhhh-hccccccccccccCCc
Q 023577 95 DTFAQETAVMVEDPNMLKYVEQELAKKRGKNIDV------NDRVENDLKHAEDELYKIPEHLK-KRNSEESSTQWTTGIA 167 (280)
Q Consensus 95 ~~Ft~eT~~~deD~hMmkYIE~eLakRk~~~~~~------~~~~~~~~~~~~~~Ly~~pe~l~-kr~~e~~s~~~lsgI~ 167 (280)
++|++|||++|||+|||+|||++|++|++..... .......+.+..++||.+|++|+ +++.+++|++||||||
T Consensus 1 ~~F~~qT~~~d~DkhM~~YIE~eL~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~l~~~~~~~~~s~~ml~gI~ 80 (104)
T PF07052_consen 1 DRFTAQTGQRDVDKHMMKYIEEELAKRKGRAAESDAEQSDSESSANNSDPPEDELYRLPEHLKAKRSEEMLSNQMLGGIP 80 (104)
T ss_pred CcccccccchhHHHHHHHHHHHHHHHhhccCcccccccccccccccccCcHHHHHHhCcHHhhcccccccccHHHhcCCc
Confidence 5899999999999999999999999999976211 12223455566789999999999 8899999999999999
Q ss_pred cccCChHHHhhcHHHHHHHHHHHH
Q 023577 168 EVQLPIEYKLKNIEETEAAKKLLQ 191 (280)
Q Consensus 168 EVDLGieaKlkNIe~TE~AKr~L~ 191 (280)
|||||+++||+||++||+|||.|+
T Consensus 81 EVdLg~eaklkNIe~TE~Akr~ll 104 (104)
T PF07052_consen 81 EVDLGIEAKLKNIERTEKAKRRLL 104 (104)
T ss_pred eecCcHHHHHhhHHHHHHHHHhcC
Confidence 999999999999999999998774
No 3
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=19.92 E-value=61 Score=29.91 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHh
Q 023577 108 PNMLKYVEQELAKK 121 (280)
Q Consensus 108 ~hMmkYIE~eLakR 121 (280)
.|||+||++|-.-+
T Consensus 11 ~~M~aFI~qEA~EK 24 (220)
T KOG1664|consen 11 KHMVAFIRQEAEEK 24 (220)
T ss_pred HHHHHHHHHHHHHH
Confidence 68999999886443
No 4
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=17.17 E-value=81 Score=29.64 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=31.2
Q ss_pred cccccCCccccCChHHHhhcHHHHHHHHHHHHHHHhccCCCCCCCCCCccchhhhhcchhh
Q 023577 160 TQWTTGIAEVQLPIEYKLKNIEETEAAKKLLQEKRLMGRAKSDFSIPSSYSADYFQRGRDY 220 (280)
Q Consensus 160 ~~~lsgI~EVDLGieaKlkNIe~TE~AKr~L~e~~~~~~~~~~~~~p~n~a~n~~qh~r~~ 220 (280)
.+-++||.-+-|+ .|+.-...+.-+++.-+|++.||.|.-|+|-|
T Consensus 65 ~~~~~~~g~~a~~----------------slq~~~s~~~~sedlPLPpgWav~~T~~grkY 109 (271)
T KOG1891|consen 65 FQSLQTLGSEALM----------------SLQQYRSSCDCSEDLPLPPGWAVEFTTEGRKY 109 (271)
T ss_pred cchhhccchhhhh----------------hhhhccccCCCcccCCCCCCcceeeEecCcee
Confidence 5667777766555 23333334445677789999999999999854
No 5
>TIGR00061 L21 ribosomal protein L21. Eubacterial and chloroplast.
Probab=16.56 E-value=55 Score=26.56 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=10.7
Q ss_pred CccccccccccccC
Q 023577 6 PQKKEKKKNFRKRS 19 (280)
Q Consensus 6 ~~~~kkkKn~RkR~ 19 (280)
+|+.|+||+||++.
T Consensus 73 vfK~krrK~y~r~~ 86 (101)
T TIGR00061 73 VYKYRRRKHSRKKQ 86 (101)
T ss_pred EEEeCCCCCccCCC
Confidence 45558889999886
No 6
>CHL00075 rpl21 ribosomal protein L21
Probab=13.42 E-value=76 Score=26.11 Aligned_cols=14 Identities=36% Similarity=0.332 Sum_probs=10.9
Q ss_pred CccccccccccccC
Q 023577 6 PQKKEKKKNFRKRS 19 (280)
Q Consensus 6 ~~~~kkkKn~RkR~ 19 (280)
+|+.|+||+||++.
T Consensus 76 vfK~krRK~yrrk~ 89 (108)
T CHL00075 76 VYKMRPKKKTRKKQ 89 (108)
T ss_pred EEEeCCCCCccCCC
Confidence 45667889999986
No 7
>PRK05573 rplU 50S ribosomal protein L21; Validated
Probab=12.34 E-value=84 Score=25.50 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=10.8
Q ss_pred CccccccccccccC
Q 023577 6 PQKKEKKKNFRKRS 19 (280)
Q Consensus 6 ~~~~kkkKn~RkR~ 19 (280)
+|++|+||+||++.
T Consensus 74 vfK~krRK~y~r~~ 87 (103)
T PRK05573 74 VFKYKRRKNYRKKQ 87 (103)
T ss_pred EEEEcCCCCccccC
Confidence 45667888999886
No 8
>PRK12278 50S ribosomal protein L21/unknown domain fusion protein; Provisional
Probab=10.69 E-value=1e+02 Score=28.46 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=10.5
Q ss_pred CccccccccccccC
Q 023577 6 PQKKEKKKNFRKRS 19 (280)
Q Consensus 6 ~~~~kkkKn~RkR~ 19 (280)
+|++++||+||++.
T Consensus 74 vfK~krRK~yrrk~ 87 (221)
T PRK12278 74 HFKKRRRQSSRRTK 87 (221)
T ss_pred EEEeCCCCCcccCC
Confidence 45557778999887
No 9
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=10.36 E-value=1.5e+02 Score=26.57 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=18.2
Q ss_pred CCcchHHHHHHHHHHHHhhhhc
Q 023577 258 QAATDQFMLERFRKRERHRVMR 279 (280)
Q Consensus 258 ~~ATDd~~~erFrK~~r~~~~~ 279 (280)
.-.|||..|.+||+..|+.+++
T Consensus 117 ~~~~~d~~y~~~r~~~r~~~~~ 138 (241)
T PRK05340 117 TLCTDDKAYQRFRRKVRNPWLQ 138 (241)
T ss_pred ccccCCHHHHHHHHHHhCHHHH
Confidence 3458999999999999987654
No 10
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=9.37 E-value=2.5e+02 Score=24.01 Aligned_cols=50 Identities=24% Similarity=0.368 Sum_probs=39.2
Q ss_pred cccccCCccccCChHHHhhcHHH--HHHHHHHHHHHHhccCCCCCCCCCCccchhhhhcc
Q 023577 160 TQWTTGIAEVQLPIEYKLKNIEE--TEAAKKLLQEKRLMGRAKSDFSIPSSYSADYFQRG 217 (280)
Q Consensus 160 ~~~lsgI~EVDLGieaKlkNIe~--TE~AKr~L~e~~~~~~~~~~~~~p~n~a~n~~qh~ 217 (280)
.++|..||+|=.|-..+|+-|.. -++||+.|.+... .+|+=--..|+|.+
T Consensus 71 ~~ll~~LP~vFVG~~~rL~~iV~~mc~Aak~Slk~~gm--------hlPPWRk~~ym~aK 122 (131)
T TIGR01615 71 KRLLESLPEVFVGTTERLRQLVRLMCDAAKKSLKKKGM--------PLPPWRKNRYMQSK 122 (131)
T ss_pred HHHHHhCCcceECCHHHHHHHHHHHHHHHHHHHHHcCC--------CCCCCCchHHHHHh
Confidence 56778899999999999998865 5777877766543 48888888888753
Done!