Query 023577
Match_columns 280
No_of_seqs 128 out of 157
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 09:12:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjr_O 50S ribosomal protein L 14.8 31 0.0011 26.8 -0.3 14 6-19 71-84 (100)
2 3v2d_V 50S ribosomal protein L 13.2 32 0.0011 26.9 -0.7 14 6-19 72-85 (101)
3 3r8s_R 50S ribosomal protein L 12.5 34 0.0012 26.7 -0.7 14 6-19 74-87 (103)
4 3bbo_T Ribosomal protein L21; 10.9 58 0.002 29.5 0.2 14 6-19 198-211 (257)
5 2ket_A Cathelicidin-6; antimic 7.3 2.1E+02 0.0073 16.9 1.6 9 266-274 3-11 (27)
6 3v26_X ORF3, ORF95, probable s 7.1 2.7E+02 0.0093 20.8 2.6 20 104-123 10-29 (101)
7 1imu_A Hypothetical protein HI 7.0 2.8E+02 0.0095 20.8 2.7 20 104-123 10-29 (107)
8 3t5d_A Septin-7; GTP-binding p 7.0 1.4E+02 0.0047 25.6 0.9 14 259-272 257-270 (274)
9 2ywq_A Protein Y, ribosomal su 5.8 3E+02 0.01 20.4 2.3 18 104-121 11-28 (105)
10 4fyl_A Ribosome hibernation pr 5.8 3.1E+02 0.011 20.1 2.3 19 104-122 10-28 (95)
No 1
>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O* ...
Probab=14.79 E-value=31 Score=26.83 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=10.8
Q ss_pred CccccccccccccC
Q 023577 6 PQKKEKKKNFRKRS 19 (280)
Q Consensus 6 ~~~~kkkKn~RkR~ 19 (280)
+|++|+||+||++.
T Consensus 71 vfK~krrK~yrrk~ 84 (100)
T 2zjr_O 71 IRKYKSGVQYRRRT 84 (100)
T ss_dssp EEEECSSSCCEEEE
T ss_pred EEEECCCCCCcCCC
Confidence 46668889999875
No 2
>3v2d_V 50S ribosomal protein L21; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...
Probab=13.16 E-value=32 Score=26.87 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=10.7
Q ss_pred CccccccccccccC
Q 023577 6 PQKKEKKKNFRKRS 19 (280)
Q Consensus 6 ~~~~kkkKn~RkR~ 19 (280)
+|+.|+||+||++.
T Consensus 72 vfK~krrK~yrrk~ 85 (101)
T 3v2d_V 72 VSKFKAKVQYRRKK 85 (101)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEECCCCCcCCCC
Confidence 45667889999875
No 3
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=12.55 E-value=34 Score=26.73 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=10.5
Q ss_pred CccccccccccccC
Q 023577 6 PQKKEKKKNFRKRS 19 (280)
Q Consensus 6 ~~~~kkkKn~RkR~ 19 (280)
+|+.|+||+||++.
T Consensus 74 vfK~krrK~yrrk~ 87 (103)
T 3r8s_R 74 IVKFRRRKHYRKQQ 87 (103)
T ss_dssp EEEEETTTTEEEEE
T ss_pred EEEecCCCCccCCC
Confidence 45557889999875
No 4
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=10.88 E-value=58 Score=29.55 Aligned_cols=14 Identities=43% Similarity=0.532 Sum_probs=11.2
Q ss_pred CccccccccccccC
Q 023577 6 PQKKEKKKNFRKRS 19 (280)
Q Consensus 6 ~~~~kkkKn~RkR~ 19 (280)
+|++|+||+|||+.
T Consensus 198 VFK~KRRK~yRRk~ 211 (257)
T 3bbo_T 198 VFKYKKKKNYRRNI 211 (257)
T ss_dssp EEECCTTTTCCEEE
T ss_pred EEEeCCCCCCcCCC
Confidence 46667889999987
No 5
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=7.31 E-value=2.1e+02 Score=16.87 Aligned_cols=9 Identities=44% Similarity=0.899 Sum_probs=5.7
Q ss_pred HHHHHHHHH
Q 023577 266 LERFRKRER 274 (280)
Q Consensus 266 ~erFrK~~r 274 (280)
|.||||.++
T Consensus 3 fkrfrkkfk 11 (27)
T 2ket_A 3 FKRFRKKFK 11 (27)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456776665
No 6
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=7.12 E-value=2.7e+02 Score=20.83 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=16.8
Q ss_pred cccchhHHHHHHHHHHHhhC
Q 023577 104 MVEDPNMLKYVEQELAKKRG 123 (280)
Q Consensus 104 ~deD~hMmkYIE~eLakRk~ 123 (280)
.+....+..||++.|.|=..
T Consensus 10 ie~t~alr~~ve~Kl~kL~k 29 (101)
T 3v26_X 10 VEITEALREFVTAKFAKLEQ 29 (101)
T ss_dssp SCCCHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHHh
Confidence 68889999999999986443
No 7
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome, solution structure, ribosome, structure 2 function project, S2F; NMR {Haemophilus influenzae} SCOP: d.204.1.1
Probab=7.00 E-value=2.8e+02 Score=20.84 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=16.8
Q ss_pred cccchhHHHHHHHHHHHhhC
Q 023577 104 MVEDPNMLKYVEQELAKKRG 123 (280)
Q Consensus 104 ~deD~hMmkYIE~eLakRk~ 123 (280)
.+....+..||++.|.|=..
T Consensus 10 i~~t~alr~~v~~kl~kL~r 29 (107)
T 1imu_A 10 MDITPAIREHLEERLAKLGK 29 (107)
T ss_dssp SCCCHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHHHHH
Confidence 57889999999999988433
No 8
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=6.95 E-value=1.4e+02 Score=25.62 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=11.7
Q ss_pred CcchHHHHHHHHHH
Q 023577 259 AATDQFMLERFRKR 272 (280)
Q Consensus 259 ~ATDd~~~erFrK~ 272 (280)
..|++.|||.||..
T Consensus 257 ~~t~~~~ye~yr~~ 270 (274)
T 3t5d_A 257 DVTNNVHYENYRSR 270 (274)
T ss_dssp HHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46899999999963
No 9
>2ywq_A Protein Y, ribosomal subunit interface protein; sigma-54 modulation protein family, structural genomics; 2.64A {Thermus thermophilus} SCOP: d.204.1.1
Probab=5.82 E-value=3e+02 Score=20.37 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=15.6
Q ss_pred cccchhHHHHHHHHHHHh
Q 023577 104 MVEDPNMLKYVEQELAKK 121 (280)
Q Consensus 104 ~deD~hMmkYIE~eLakR 121 (280)
.+....+..||++.|.|=
T Consensus 11 i~~t~al~~~v~~kl~kL 28 (105)
T 2ywq_A 11 LEITDAIRDYVEKKLARL 28 (105)
T ss_dssp SCCCHHHHHHHHHHHHGG
T ss_pred CcCCHHHHHHHHHHHHHH
Confidence 578889999999999853
No 10
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=5.80 E-value=3.1e+02 Score=20.11 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=16.2
Q ss_pred cccchhHHHHHHHHHHHhh
Q 023577 104 MVEDPNMLKYVEQELAKKR 122 (280)
Q Consensus 104 ~deD~hMmkYIE~eLakRk 122 (280)
.++...+..||++.|.|=.
T Consensus 10 i~vt~al~~~v~~Kl~kl~ 28 (95)
T 4fyl_A 10 IDLTDSMQDYVHSKFDKLE 28 (95)
T ss_dssp SCCCHHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 6788899999999998743
Done!