Query 023577
Match_columns 280
No_of_seqs 128 out of 157
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 09:12:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023577.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023577hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j01v1 b.155.1.1 (V:1-101) Ri 11.9 27 0.002 25.2 0.5 14 6-19 72-85 (101)
2 d1e7la1 a.140.4.1 (A:104-157) 10.5 95 0.0069 20.0 2.8 21 257-277 33-53 (54)
3 d2zjro1 b.155.1.1 (O:5-98) Rib 10.3 26 0.0019 25.0 -0.1 14 6-19 67-80 (94)
4 d1k8ba_ d.241.1.1 (A:) Transla 8.7 66 0.0048 20.3 1.4 24 96-119 13-37 (52)
5 d2qamr1 b.155.1.1 (R:1-103) Ri 7.6 38 0.0028 24.5 -0.2 14 6-19 74-87 (103)
6 d2ywqa1 d.204.1.1 (A:1-95) Rib 5.4 1.6E+02 0.012 19.6 2.3 19 104-122 11-29 (95)
7 d1l4sa_ d.204.1.1 (A:) Ribosom 4.9 2E+02 0.014 19.8 2.5 19 104-122 9-27 (112)
8 d2c5ra1 a.251.1.1 (A:66-129) E 3.3 2.3E+02 0.017 18.3 1.6 15 106-120 35-49 (64)
9 d1imua_ d.204.1.1 (A:) Ribosom 3.0 3.7E+02 0.027 18.0 2.7 20 104-123 10-29 (107)
10 d1iufa2 a.4.1.7 (A:76-141) Ars 2.9 2.2E+02 0.016 18.1 1.2 9 265-273 55-63 (66)
No 1
>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus thermophilus [TaxId: 274]}
Probab=11.92 E-value=27 Score=25.19 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=10.6
Q ss_pred CccccccccccccC
Q 023577 6 PQKKEKKKNFRKRS 19 (280)
Q Consensus 6 ~~~~kkkKn~RkR~ 19 (280)
+|+.|+||+||++.
T Consensus 72 vfK~krRK~y~R~~ 85 (101)
T d2j01v1 72 VSKFKAKVQYRRKK 85 (101)
T ss_dssp CCCCCEECCCCEEC
T ss_pred EEEEcCcCCcccCC
Confidence 45667889999875
No 2
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=10.47 E-value=95 Score=20.02 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=16.6
Q ss_pred CCCcchHHHHHHHHHHHHhhh
Q 023577 257 RQAATDQFMLERFRKRERHRV 277 (280)
Q Consensus 257 ~~~ATDd~~~erFrK~~r~~~ 277 (280)
+++-|-.-...+|||++++++
T Consensus 33 ne~dtk~el~~kf~KQ~~K~~ 53 (54)
T d1e7la1 33 NESDTKTQLIASFKKQLRKSL 53 (54)
T ss_dssp CTTCCHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHHhc
Confidence 455667788999999999764
No 3
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus radiodurans [TaxId: 1299]}
Probab=10.27 E-value=26 Score=24.98 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=10.4
Q ss_pred CccccccccccccC
Q 023577 6 PQKKEKKKNFRKRS 19 (280)
Q Consensus 6 ~~~~kkkKn~RkR~ 19 (280)
+|+.++||+||++.
T Consensus 67 vfK~krrK~yrRk~ 80 (94)
T d2zjro1 67 IRKYKSGVQYRRRT 80 (94)
T ss_dssp EEEECSSSCCEEEE
T ss_pred EEEEcCCCCccccC
Confidence 45668888998864
No 4
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.68 E-value=66 Score=20.34 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=16.0
Q ss_pred cchhccccc-ccchhHHHHHHHHHH
Q 023577 96 TFAQETAVM-VEDPNMLKYVEQELA 119 (280)
Q Consensus 96 ~Ft~eT~~~-deD~hMmkYIE~eLa 119 (280)
+|..=.... -...|+++||-.||.
T Consensus 13 Nf~eI~~~L~R~p~hv~kfl~~ELg 37 (52)
T d1k8ba_ 13 NFRELAKAVNRDEEFFAKYLLKETG 37 (52)
T ss_dssp CHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 555322222 356799999999994
No 5
>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia coli [TaxId: 562]}
Probab=7.61 E-value=38 Score=24.46 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=10.2
Q ss_pred CccccccccccccC
Q 023577 6 PQKKEKKKNFRKRS 19 (280)
Q Consensus 6 ~~~~kkkKn~RkR~ 19 (280)
+|+.++||+||++.
T Consensus 74 vfK~krrk~yrr~~ 87 (103)
T d2qamr1 74 IVKFRRRKHYRKQQ 87 (103)
T ss_dssp EEEECTTSSCEEEE
T ss_pred EEEecCCCcccccC
Confidence 45557889998864
No 6
>d2ywqa1 d.204.1.1 (A:1-95) Ribosome binding protein Y (YfiA homologue) {Thermus thermophilus [TaxId: 274]}
Probab=5.37 E-value=1.6e+02 Score=19.58 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=15.6
Q ss_pred cccchhHHHHHHHHHHHhh
Q 023577 104 MVEDPNMLKYVEQELAKKR 122 (280)
Q Consensus 104 ~deD~hMmkYIE~eLakRk 122 (280)
.+.-..|..|||+.|.+=.
T Consensus 11 ~~lt~al~~~ve~kl~kL~ 29 (95)
T d2ywqa1 11 LEITDAIRDYVEKKLARLD 29 (95)
T ss_dssp SCCCHHHHHHHHHHHHGGG
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 5677889999999998643
No 7
>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Escherichia coli [TaxId: 562]}
Probab=4.85 E-value=2e+02 Score=19.82 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=15.9
Q ss_pred cccchhHHHHHHHHHHHhh
Q 023577 104 MVEDPNMLKYVEQELAKKR 122 (280)
Q Consensus 104 ~deD~hMmkYIE~eLakRk 122 (280)
.+.-..|..||++.|.+=.
T Consensus 9 ~~lt~al~~~i~~kl~kl~ 27 (112)
T d1l4sa_ 9 MEITPAIRQHVADRLAKLE 27 (112)
T ss_dssp SCCCHHHHHHHHHHHHHCT
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 5778899999999998743
No 8
>d2c5ra1 a.251.1.1 (A:66-129) Early protein gp16.7 {Bacteriophage phi-29 [TaxId: 10756]}
Probab=3.32 E-value=2.3e+02 Score=18.34 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=10.9
Q ss_pred cchhHHHHHHHHHHH
Q 023577 106 EDPNMLKYVEQELAK 120 (280)
Q Consensus 106 eD~hMmkYIE~eLak 120 (280)
..++.|.|||.+-+-
T Consensus 35 te~EVmnYiEnqR~~ 49 (64)
T d2c5ra1 35 SEQEVLNYIETQRTY 49 (64)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhHhH
Confidence 456789999987543
No 9
>d1imua_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=3.01 E-value=3.7e+02 Score=17.98 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=15.9
Q ss_pred cccchhHHHHHHHHHHHhhC
Q 023577 104 MVEDPNMLKYVEQELAKKRG 123 (280)
Q Consensus 104 ~deD~hMmkYIE~eLakRk~ 123 (280)
.+.-..|..||++.|.+=..
T Consensus 10 ~~lt~al~~~i~~kl~kl~k 29 (107)
T d1imua_ 10 MDITPAIREHLEERLAKLGK 29 (107)
T ss_dssp SCCCHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHHHHh
Confidence 46677899999999987544
No 10
>d1iufa2 a.4.1.7 (A:76-141) Ars-binding protein 1, ABP1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=2.94 E-value=2.2e+02 Score=18.10 Aligned_cols=9 Identities=67% Similarity=0.948 Sum_probs=5.0
Q ss_pred HHHHHHHHH
Q 023577 265 MLERFRKRE 273 (280)
Q Consensus 265 ~~erFrK~~ 273 (280)
-++|||||.
T Consensus 55 WL~rFK~Rh 63 (66)
T d1iufa2 55 WLEGFRKRH 63 (66)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 456666653
Done!