Query 023578
Match_columns 280
No_of_seqs 203 out of 1649
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:06:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13226 phosphoglycolate phos 100.0 2.3E-30 5.1E-35 212.6 21.1 203 67-272 11-224 (229)
2 PRK13288 pyrophosphatase PpaX; 100.0 1.5E-30 3.3E-35 211.8 19.1 202 67-275 2-213 (214)
3 PRK11587 putative phosphatase; 100.0 3.3E-30 7.1E-35 210.4 20.2 196 67-269 2-204 (218)
4 PLN02770 haloacid dehalogenase 100.0 5.2E-30 1.1E-34 212.9 20.9 197 66-267 20-230 (248)
5 COG0546 Gph Predicted phosphat 100.0 1.6E-29 3.5E-34 206.3 22.3 205 66-274 2-219 (220)
6 TIGR03351 PhnX-like phosphonat 100.0 1.7E-29 3.6E-34 206.6 21.6 201 68-272 1-219 (220)
7 TIGR01422 phosphonatase phosph 100.0 2.5E-29 5.4E-34 209.8 20.8 202 68-272 2-252 (253)
8 PRK13478 phosphonoacetaldehyde 100.0 2.7E-29 5.8E-34 211.1 21.0 207 66-275 2-257 (267)
9 PLN03243 haloacid dehalogenase 100.0 6E-29 1.3E-33 206.9 22.0 200 66-272 22-234 (260)
10 PRK13223 phosphoglycolate phos 100.0 7.3E-29 1.6E-33 208.4 22.4 208 63-274 8-231 (272)
11 PRK13225 phosphoglycolate phos 100.0 4.2E-29 9.2E-34 209.1 20.5 204 66-276 60-271 (273)
12 TIGR01449 PGP_bact 2-phosphogl 100.0 5.2E-29 1.1E-33 202.7 20.4 198 71-272 1-213 (213)
13 PRK10826 2-deoxyglucose-6-phos 100.0 6.5E-29 1.4E-33 203.4 20.5 199 67-270 6-217 (222)
14 PRK13222 phosphoglycolate phos 100.0 4.8E-28 1E-32 198.8 23.0 205 66-274 4-223 (226)
15 PLN02575 haloacid dehalogenase 100.0 3.6E-28 7.8E-33 209.1 22.8 204 67-277 130-347 (381)
16 COG0637 Predicted phosphatase/ 100.0 2E-28 4.3E-33 199.5 18.2 205 68-274 2-218 (221)
17 TIGR01454 AHBA_synth_RP 3-amin 100.0 4.3E-28 9.4E-33 196.1 19.5 194 71-273 1-204 (205)
18 TIGR02253 CTE7 HAD superfamily 100.0 9.5E-28 2.1E-32 196.4 20.1 196 68-268 2-220 (221)
19 PRK14988 GMP/IMP nucleotidase; 100.0 1.3E-27 2.9E-32 195.3 17.6 129 140-276 90-222 (224)
20 PRK09449 dUMP phosphatase; Pro 100.0 5.4E-27 1.2E-31 192.3 20.7 130 138-273 90-223 (224)
21 PLN02940 riboflavin kinase 100.0 3.7E-27 7.9E-32 206.4 19.8 199 66-270 9-218 (382)
22 TIGR02254 YjjG/YfnB HAD superf 100.0 1.4E-26 3E-31 189.8 21.0 199 68-272 1-224 (224)
23 PRK10748 flavin mononucleotide 99.9 1.5E-26 3.2E-31 191.1 17.9 126 140-272 110-238 (238)
24 PRK10563 6-phosphogluconate ph 99.9 2E-26 4.4E-31 188.5 17.8 199 67-274 3-214 (221)
25 PLN02779 haloacid dehalogenase 99.9 4.1E-26 8.9E-31 192.8 19.8 197 67-270 39-270 (286)
26 PRK06698 bifunctional 5'-methy 99.9 4E-26 8.6E-31 205.5 20.9 204 67-278 240-459 (459)
27 TIGR01428 HAD_type_II 2-haloal 99.9 2.1E-26 4.6E-31 185.2 16.9 104 140-244 89-195 (198)
28 TIGR02009 PGMB-YQAB-SF beta-ph 99.9 4.3E-26 9.4E-31 181.4 17.5 170 68-240 1-185 (185)
29 TIGR01990 bPGM beta-phosphoglu 99.9 1.1E-25 2.5E-30 179.0 16.3 168 70-240 1-184 (185)
30 PRK10725 fructose-1-P/6-phosph 99.9 2.3E-25 5.1E-30 177.7 17.7 172 67-241 4-186 (188)
31 COG1011 Predicted hydrolase (H 99.9 3.1E-25 6.6E-30 182.4 18.0 129 141-274 97-228 (229)
32 PHA02597 30.2 hypothetical pro 99.9 5.5E-25 1.2E-29 176.8 15.5 186 68-270 2-196 (197)
33 TIGR02252 DREG-2 REG-2-like, H 99.9 1.6E-24 3.4E-29 175.0 18.0 170 69-239 1-203 (203)
34 PF13419 HAD_2: Haloacid dehal 99.9 3.7E-25 7.9E-30 174.0 13.6 167 71-240 1-176 (176)
35 PLN02919 haloacid dehalogenase 99.9 3.9E-24 8.4E-29 207.7 22.1 199 65-268 72-285 (1057)
36 TIGR02247 HAD-1A3-hyp Epoxide 99.9 2.2E-24 4.7E-29 175.2 16.7 172 68-242 2-197 (211)
37 PRK08942 D,D-heptose 1,7-bisph 99.9 3.3E-24 7.2E-29 169.8 16.2 129 141-274 27-178 (181)
38 TIGR00213 GmhB_yaeD D,D-heptos 99.9 4.9E-24 1.1E-28 168.0 14.6 124 141-269 24-175 (176)
39 TIGR01993 Pyr-5-nucltdase pyri 99.9 8.3E-24 1.8E-28 168.1 12.7 160 70-240 2-184 (184)
40 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 3.2E-23 7E-28 164.5 14.9 97 142-240 84-183 (183)
41 TIGR00338 serB phosphoserine p 99.9 8.6E-23 1.9E-27 166.8 16.9 188 65-272 11-219 (219)
42 PLN02811 hydrolase 99.9 4.6E-23 9.9E-28 168.4 14.8 190 75-270 1-208 (220)
43 TIGR01548 HAD-SF-IA-hyp1 haloa 99.9 1.3E-22 2.8E-27 163.0 16.5 164 69-233 1-197 (197)
44 PRK09456 ?-D-glucose-1-phospha 99.9 1.7E-22 3.7E-27 162.6 16.1 99 143-242 84-186 (199)
45 PRK06769 hypothetical protein; 99.9 1.4E-22 3E-27 159.0 14.7 129 141-272 26-171 (173)
46 TIGR01549 HAD-SF-IA-v1 haloaci 99.9 2.2E-22 4.9E-27 155.3 15.3 147 70-234 1-154 (154)
47 TIGR01662 HAD-SF-IIIA HAD-supe 99.9 1.6E-22 3.6E-27 151.9 12.9 98 142-241 24-131 (132)
48 TIGR01656 Histidinol-ppas hist 99.9 2E-22 4.4E-27 154.1 12.5 100 142-242 26-146 (147)
49 PLN02954 phosphoserine phospha 99.9 2.2E-21 4.8E-26 159.0 18.4 190 67-272 11-223 (224)
50 KOG2914 Predicted haloacid-hal 99.9 2.8E-21 6.1E-26 154.7 17.9 197 66-268 8-218 (222)
51 PRK11133 serB phosphoserine ph 99.9 2.4E-21 5.1E-26 165.3 16.4 190 65-274 107-317 (322)
52 TIGR01691 enolase-ppase 2,3-di 99.9 1.6E-20 3.5E-25 151.9 19.5 112 131-244 83-199 (220)
53 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.9 1.4E-21 2.9E-26 157.5 13.4 169 67-241 3-190 (201)
54 TIGR01261 hisB_Nterm histidino 99.9 3.3E-21 7.2E-26 148.8 11.9 101 141-242 27-148 (161)
55 PRK09552 mtnX 2-hydroxy-3-keto 99.9 7.9E-21 1.7E-25 155.1 14.4 194 68-278 3-218 (219)
56 TIGR01493 HAD-SF-IA-v2 Haloaci 99.9 7.7E-22 1.7E-26 155.5 7.3 86 140-233 87-175 (175)
57 KOG3085 Predicted hydrolase (H 99.8 9.2E-21 2E-25 152.2 11.1 101 141-242 111-214 (237)
58 PRK13582 thrH phosphoserine ph 99.8 1.2E-19 2.6E-24 146.7 15.1 191 68-277 1-200 (205)
59 TIGR01664 DNA-3'-Pase DNA 3'-p 99.8 2.6E-20 5.7E-25 144.7 10.7 96 144-239 43-160 (166)
60 TIGR01672 AphA HAD superfamily 99.8 3E-19 6.5E-24 145.5 16.8 149 70-252 65-222 (237)
61 KOG3109 Haloacid dehalogenase- 99.8 3.2E-19 7E-24 138.4 13.4 123 141-275 98-230 (244)
62 TIGR01685 MDP-1 magnesium-depe 99.8 4.7E-20 1E-24 143.2 6.3 102 140-242 42-158 (174)
63 TIGR01670 YrbI-phosphatas 3-de 99.8 1.5E-19 3.2E-24 139.1 6.1 112 151-277 36-150 (154)
64 TIGR02726 phenyl_P_delta pheny 99.8 2.2E-19 4.8E-24 139.2 6.9 97 151-264 42-140 (169)
65 COG2179 Predicted hydrolase of 99.8 1.1E-18 2.4E-23 130.1 10.2 96 141-242 44-139 (175)
66 TIGR02137 HSK-PSP phosphoserin 99.8 2E-17 4.4E-22 132.7 16.3 181 69-275 2-198 (203)
67 TIGR01668 YqeG_hyp_ppase HAD s 99.8 8.7E-18 1.9E-22 131.4 13.8 95 142-242 42-137 (170)
68 cd01427 HAD_like Haloacid deha 99.8 5.9E-18 1.3E-22 127.3 11.7 100 140-240 21-139 (139)
69 PRK05446 imidazole glycerol-ph 99.8 9.1E-18 2E-22 144.1 13.8 102 140-242 27-149 (354)
70 COG0560 SerB Phosphoserine pho 99.8 2.2E-17 4.8E-22 133.0 14.1 97 142-239 76-185 (212)
71 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.8 1E-17 2.3E-22 139.6 11.9 127 145-272 122-254 (257)
72 TIGR03333 salvage_mtnX 2-hydro 99.7 2.8E-17 6E-22 133.7 12.5 191 71-277 2-213 (214)
73 PRK11009 aphA acid phosphatase 99.7 1.1E-16 2.3E-21 130.5 15.2 106 138-252 109-222 (237)
74 TIGR01489 DKMTPPase-SF 2,3-dik 99.7 3.8E-17 8.2E-22 130.1 12.2 93 141-237 70-185 (188)
75 TIGR01681 HAD-SF-IIIC HAD-supe 99.7 3.7E-17 8E-22 121.7 9.7 86 143-232 29-126 (128)
76 PRK09484 3-deoxy-D-manno-octul 99.7 1.4E-17 3E-22 131.8 7.1 108 151-273 56-169 (183)
77 COG0241 HisB Histidinol phosph 99.7 5.3E-16 1.1E-20 119.9 15.5 128 141-273 29-177 (181)
78 PHA02530 pseT polynucleotide k 99.7 1.4E-16 3E-21 136.3 11.8 100 141-241 185-296 (300)
79 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.7 7.5E-16 1.6E-20 127.9 15.1 74 194-268 176-249 (249)
80 PRK10444 UMP phosphatase; Prov 99.7 6E-16 1.3E-20 128.0 14.2 75 193-268 171-245 (248)
81 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.7 1.1E-15 2.5E-20 123.1 14.7 97 142-239 86-196 (202)
82 TIGR01488 HAD-SF-IB Haloacid D 99.7 1.1E-15 2.4E-20 120.5 13.9 93 140-233 70-177 (177)
83 TIGR01452 PGP_euk phosphoglyco 99.7 1.7E-16 3.7E-21 134.1 8.6 122 145-268 145-279 (279)
84 COG0647 NagD Predicted sugar p 99.7 2.1E-15 4.5E-20 124.5 14.1 81 194-275 188-268 (269)
85 smart00577 CPDc catalytic doma 99.7 1.2E-16 2.6E-21 122.2 5.7 93 141-238 43-139 (148)
86 PF00702 Hydrolase: haloacid d 99.6 5.2E-16 1.1E-20 126.1 9.1 90 142-234 126-215 (215)
87 PLN02645 phosphoglycolate phos 99.6 1.1E-15 2.5E-20 130.9 10.5 122 152-274 179-309 (311)
88 PRK11590 hypothetical protein; 99.6 4.7E-14 1E-18 114.4 16.7 168 68-241 6-202 (211)
89 TIGR01663 PNK-3'Pase polynucle 99.6 5.6E-15 1.2E-19 133.0 11.1 91 144-235 198-305 (526)
90 PRK10530 pyridoxal phosphate ( 99.6 1.9E-14 4.1E-19 121.4 11.3 123 145-276 139-271 (272)
91 KOG1615 Phosphoserine phosphat 99.6 7.6E-15 1.7E-19 112.0 7.1 121 140-269 85-222 (227)
92 COG1778 Low specificity phosph 99.6 1.3E-15 2.9E-20 112.3 2.9 115 143-274 37-157 (170)
93 TIGR01686 FkbH FkbH-like domai 99.6 2E-14 4.4E-19 123.7 10.6 89 143-236 31-125 (320)
94 PF09419 PGP_phosphatase: Mito 99.5 9.1E-14 2E-18 106.6 10.9 94 141-242 57-165 (168)
95 PF13242 Hydrolase_like: HAD-h 99.5 5E-14 1.1E-18 94.7 7.5 73 194-268 2-75 (75)
96 PTZ00445 p36-lilke protein; Pr 99.5 6.8E-14 1.5E-18 109.5 8.7 99 143-242 75-206 (219)
97 PRK08238 hypothetical protein; 99.5 8.2E-13 1.8E-17 118.6 15.8 152 69-242 11-166 (479)
98 PF08645 PNK3P: Polynucleotide 99.5 1.3E-13 2.7E-18 106.2 7.3 96 142-238 27-153 (159)
99 PRK01158 phosphoglycolate phos 99.5 4.5E-13 9.7E-18 110.2 11.1 105 162-275 118-228 (230)
100 KOG3040 Predicted sugar phosph 99.5 1.8E-12 3.9E-17 100.2 13.2 80 194-274 179-258 (262)
101 COG4229 Predicted enolase-phos 99.5 5E-12 1.1E-16 95.7 15.2 120 140-266 100-224 (229)
102 PRK10513 sugar phosphate phosp 99.5 9.8E-13 2.1E-17 110.8 12.3 73 195-276 194-268 (270)
103 PF12710 HAD: haloacid dehalog 99.4 1.1E-12 2.3E-17 104.7 11.7 84 146-231 92-192 (192)
104 TIGR01545 YfhB_g-proteo haloac 99.4 1.3E-11 2.8E-16 99.8 16.4 119 116-238 70-199 (210)
105 PRK15126 thiamin pyrimidine py 99.4 1.8E-12 4E-17 109.3 11.8 72 197-277 188-263 (272)
106 PF06888 Put_Phosphatase: Puta 99.4 2.2E-12 4.9E-17 104.6 11.6 102 140-242 68-197 (234)
107 TIGR01487 SPP-like sucrose-pho 99.4 1.5E-12 3.3E-17 105.9 10.2 63 195-266 145-207 (215)
108 TIGR01544 HAD-SF-IE haloacid d 99.4 1.4E-11 3.1E-16 102.1 15.7 93 140-233 118-230 (277)
109 PRK10976 putative hydrolase; P 99.4 4.6E-12 9.9E-17 106.5 12.5 72 196-276 189-264 (266)
110 TIGR01482 SPP-subfamily Sucros 99.4 2.3E-13 5.1E-18 111.5 3.8 105 161-274 109-223 (225)
111 TIGR01456 CECR5 HAD-superfamil 99.4 6.2E-11 1.3E-15 102.1 18.2 77 194-272 231-320 (321)
112 COG0561 Cof Predicted hydrolas 99.4 6.2E-12 1.4E-16 105.6 11.8 73 196-277 188-262 (264)
113 PF12689 Acid_PPase: Acid Phos 99.4 9.5E-13 2.1E-17 101.4 6.0 101 140-242 42-152 (169)
114 PLN02887 hydrolase family prot 99.3 8.2E-12 1.8E-16 114.2 11.9 70 197-275 507-578 (580)
115 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.3 6.4E-12 1.4E-16 104.1 8.4 89 142-235 23-116 (242)
116 TIGR01533 lipo_e_P4 5'-nucleot 99.3 3E-11 6.5E-16 100.1 11.8 84 140-230 115-204 (266)
117 KOG2882 p-Nitrophenyl phosphat 99.3 3E-11 6.5E-16 99.1 9.7 79 194-273 222-304 (306)
118 COG4359 Uncharacterized conser 99.3 3.8E-11 8.3E-16 91.1 9.0 127 140-277 70-216 (220)
119 TIGR02251 HIF-SF_euk Dullard-l 99.3 2.9E-12 6.3E-17 99.2 3.0 96 141-241 40-139 (162)
120 PRK00192 mannosyl-3-phosphogly 99.2 4.3E-10 9.3E-15 94.9 15.5 114 154-275 143-269 (273)
121 PF08282 Hydrolase_3: haloacid 99.2 7.8E-11 1.7E-15 97.7 9.3 61 198-267 187-247 (254)
122 TIGR01460 HAD-SF-IIA Haloacid 99.2 1.3E-10 2.7E-15 95.9 10.2 48 194-241 186-234 (236)
123 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.2 3.2E-11 6.9E-16 99.9 5.4 96 145-241 140-241 (242)
124 PF06941 NT5C: 5' nucleotidase 99.2 7.1E-11 1.5E-15 94.3 7.0 176 69-274 2-187 (191)
125 TIGR01684 viral_ppase viral ph 99.1 2.1E-10 4.7E-15 94.9 8.9 56 145-200 148-206 (301)
126 TIGR00099 Cof-subfamily Cof su 99.1 4.6E-10 9.9E-15 93.8 11.1 64 195-267 186-249 (256)
127 TIGR02244 HAD-IG-Ncltidse HAD 99.1 9.6E-10 2.1E-14 94.2 10.8 102 140-241 181-323 (343)
128 PRK03669 mannosyl-3-phosphogly 99.1 1.8E-10 3.9E-15 97.1 6.2 80 193-276 183-268 (271)
129 PHA03398 viral phosphatase sup 99.1 1.2E-09 2.6E-14 90.6 10.0 83 145-227 150-266 (303)
130 TIGR02471 sucr_syn_bact_C sucr 99.0 2.8E-10 6.2E-15 93.9 5.5 107 159-274 112-233 (236)
131 TIGR01525 ATPase-IB_hvy heavy 99.0 2.3E-09 5E-14 99.2 10.9 115 142-273 383-500 (556)
132 PRK10187 trehalose-6-phosphate 99.0 1.6E-08 3.6E-13 84.7 14.8 68 197-277 174-245 (266)
133 KOG3120 Predicted haloacid deh 99.0 4.5E-09 9.8E-14 82.4 10.2 101 140-241 81-209 (256)
134 TIGR01512 ATPase-IB2_Cd heavy 99.0 2.9E-09 6.3E-14 98.0 10.6 116 142-273 361-479 (536)
135 COG4087 Soluble P-type ATPase 99.0 5.4E-09 1.2E-13 75.0 9.5 124 141-277 28-151 (152)
136 TIGR01511 ATPase-IB1_Cu copper 99.0 4.7E-09 1E-13 97.1 11.0 114 142-273 404-519 (562)
137 TIGR01484 HAD-SF-IIB HAD-super 98.9 1.9E-08 4E-13 81.1 11.2 44 194-238 160-203 (204)
138 TIGR02463 MPGP_rel mannosyl-3- 98.9 2E-08 4.4E-13 82.0 11.1 43 196-239 178-220 (221)
139 TIGR01485 SPP_plant-cyano sucr 98.9 1.4E-08 3E-13 84.6 9.6 84 157-241 117-210 (249)
140 PF13344 Hydrolase_6: Haloacid 98.9 3.3E-08 7.2E-13 70.2 10.1 82 143-235 14-100 (101)
141 TIGR01486 HAD-SF-IIB-MPGP mann 98.8 1.1E-07 2.3E-12 79.6 13.8 76 194-275 173-255 (256)
142 TIGR02461 osmo_MPG_phos mannos 98.8 9.1E-08 2E-12 78.3 11.9 40 198-238 182-223 (225)
143 smart00775 LNS2 LNS2 domain. T 98.8 1.4E-07 2.9E-12 72.7 11.8 94 143-237 27-142 (157)
144 PRK10671 copA copper exporting 98.8 4.2E-08 9.1E-13 95.0 10.5 116 143-273 650-765 (834)
145 TIGR01675 plant-AP plant acid 98.7 1.1E-07 2.3E-12 77.0 9.9 97 140-241 117-222 (229)
146 TIGR00685 T6PP trehalose-phosp 98.7 5E-08 1.1E-12 80.9 7.7 69 197-275 167-242 (244)
147 PF03767 Acid_phosphat_B: HAD 98.7 2.6E-08 5.6E-13 81.4 5.4 95 142-241 114-222 (229)
148 TIGR01522 ATPase-IIA2_Ca golgi 98.7 1.4E-07 3.1E-12 91.7 10.7 123 143-273 528-671 (884)
149 KOG2630 Enolase-phosphatase E- 98.7 1.2E-06 2.5E-11 69.4 13.7 122 142-268 122-248 (254)
150 PF11019 DUF2608: Protein of u 98.7 1.8E-06 3.9E-11 71.6 15.5 99 142-241 80-209 (252)
151 COG3700 AphA Acid phosphatase 98.6 5.5E-07 1.2E-11 68.4 10.8 155 67-252 62-222 (237)
152 TIGR02250 FCP1_euk FCP1-like p 98.5 7.8E-08 1.7E-12 73.8 4.0 79 140-223 55-137 (156)
153 TIGR01116 ATPase-IIA1_Ca sarco 98.5 8.7E-07 1.9E-11 86.6 10.6 122 143-273 537-683 (917)
154 PLN02382 probable sucrose-phos 98.5 4.8E-06 1E-10 74.1 14.2 45 194-239 172-220 (413)
155 PRK11033 zntA zinc/cadmium/mer 98.5 1.8E-06 3.8E-11 82.6 12.0 112 143-273 568-681 (741)
156 COG4996 Predicted phosphatase 98.5 3.1E-07 6.6E-12 66.1 4.9 84 140-230 38-132 (164)
157 PLN02177 glycerol-3-phosphate 98.4 1.8E-05 4E-10 71.7 17.2 162 68-241 22-214 (497)
158 PRK14501 putative bifunctional 98.4 4.6E-06 9.9E-11 79.8 14.0 66 198-277 658-725 (726)
159 COG5663 Uncharacterized conser 98.4 7E-07 1.5E-11 67.1 6.6 135 126-278 55-192 (194)
160 PF05116 S6PP: Sucrose-6F-phos 98.4 2.4E-06 5.2E-11 70.9 9.8 44 196-241 164-207 (247)
161 PLN02580 trehalose-phosphatase 98.4 6.3E-06 1.4E-10 71.9 12.5 70 197-277 301-378 (384)
162 TIGR01680 Veg_Stor_Prot vegeta 98.4 2.2E-06 4.7E-11 70.7 9.1 102 140-242 142-250 (275)
163 PRK14502 bifunctional mannosyl 98.4 9.7E-06 2.1E-10 75.0 13.9 46 195-241 611-658 (694)
164 PLN02205 alpha,alpha-trehalose 98.3 1.2E-05 2.6E-10 77.5 14.0 73 194-278 759-847 (854)
165 TIGR01689 EcbF-BcbF capsule bi 98.3 4.7E-06 1E-10 61.2 8.6 48 143-190 24-86 (126)
166 COG2503 Predicted secreted aci 98.3 6.4E-06 1.4E-10 65.9 9.8 84 140-230 119-209 (274)
167 TIGR01497 kdpB K+-transporting 98.3 8.7E-06 1.9E-10 76.2 11.1 114 143-273 446-561 (675)
168 PF03031 NIF: NLI interacting 98.2 1.5E-06 3.2E-11 67.2 4.4 81 141-226 34-118 (159)
169 PTZ00174 phosphomannomutase; P 98.2 5.2E-06 1.1E-10 69.0 7.6 35 144-178 23-57 (247)
170 PRK14010 potassium-transportin 98.2 1.6E-05 3.6E-10 74.5 11.4 114 143-273 441-556 (673)
171 PLN02423 phosphomannomutase 98.2 9.8E-06 2.1E-10 67.2 8.7 42 194-241 186-231 (245)
172 PRK10517 magnesium-transportin 98.2 1.1E-05 2.3E-10 78.7 10.0 122 143-273 550-690 (902)
173 PF08235 LNS2: LNS2 (Lipin/Ned 98.1 3.6E-05 7.9E-10 58.5 10.2 91 143-236 27-141 (157)
174 PRK12702 mannosyl-3-phosphogly 98.1 7.4E-06 1.6E-10 68.4 6.9 40 144-183 19-58 (302)
175 PRK01122 potassium-transportin 98.1 3.4E-05 7.3E-10 72.5 11.4 114 143-273 445-560 (679)
176 TIGR01524 ATPase-IIIB_Mg magne 98.1 2.1E-05 4.6E-10 76.6 9.7 122 143-273 515-655 (867)
177 COG2217 ZntA Cation transport 98.0 4.8E-05 1E-09 71.7 10.9 114 143-273 537-652 (713)
178 PRK15122 magnesium-transportin 98.0 2.4E-05 5.2E-10 76.4 9.1 122 143-273 550-690 (903)
179 PF05761 5_nucleotid: 5' nucle 98.0 3.7E-05 7.9E-10 68.7 9.4 102 140-241 180-324 (448)
180 TIGR01517 ATPase-IIB_Ca plasma 98.0 3.7E-05 7.9E-10 75.7 10.1 123 143-273 579-722 (941)
181 PLN02645 phosphoglycolate phos 98.0 4.9E-05 1.1E-09 65.4 9.7 89 142-239 43-136 (311)
182 COG3882 FkbH Predicted enzyme 98.0 4.6E-05 1E-09 66.9 8.8 88 144-235 256-348 (574)
183 TIGR01647 ATPase-IIIA_H plasma 98.0 4.5E-05 9.8E-10 73.2 9.6 121 143-273 442-587 (755)
184 PLN03017 trehalose-phosphatase 97.9 0.0003 6.5E-09 61.0 13.1 71 197-277 283-360 (366)
185 PF05152 DUF705: Protein of un 97.9 0.00014 3.1E-09 59.9 10.5 85 143-227 142-260 (297)
186 PLN02151 trehalose-phosphatase 97.9 0.00023 4.9E-09 61.5 12.0 70 197-277 269-346 (354)
187 TIGR01523 ATPase-IID_K-Na pota 97.9 9.1E-05 2E-09 73.4 10.6 123 143-273 646-799 (1053)
188 KOG2961 Predicted hydrolase (H 97.8 0.00059 1.3E-08 50.8 11.3 92 143-242 61-168 (190)
189 KOG2134 Polynucleotide kinase 97.8 4.9E-05 1.1E-09 65.0 6.4 94 143-237 104-229 (422)
190 TIGR02245 HAD_IIID1 HAD-superf 97.7 0.00026 5.6E-09 56.2 8.9 87 143-235 45-150 (195)
191 COG4030 Uncharacterized protei 97.7 0.0023 5.1E-08 51.0 14.0 127 141-274 81-263 (315)
192 TIGR01106 ATPase-IIC_X-K sodiu 97.7 0.00019 4.2E-09 71.0 9.8 123 143-273 568-737 (997)
193 PLN02499 glycerol-3-phosphate 97.5 0.0076 1.6E-07 54.2 15.5 84 151-241 101-197 (498)
194 KOG0207 Cation transport ATPas 97.5 0.00073 1.6E-08 64.0 9.3 114 143-273 723-838 (951)
195 COG0474 MgtA Cation transport 97.4 0.00074 1.6E-08 66.3 9.4 124 142-273 546-692 (917)
196 TIGR01657 P-ATPase-V P-type AT 97.3 0.0023 5.1E-08 63.9 11.5 121 143-274 656-853 (1054)
197 COG5610 Predicted hydrolase (H 97.3 0.0009 2E-08 58.6 7.0 96 145-240 101-201 (635)
198 KOG1618 Predicted phosphatase 97.3 0.0027 5.8E-08 53.2 9.4 84 143-239 51-144 (389)
199 TIGR01652 ATPase-Plipid phosph 97.3 0.00086 1.9E-08 67.1 7.7 122 143-272 631-819 (1057)
200 KOG0202 Ca2+ transporting ATPa 97.2 0.0016 3.4E-08 61.3 7.7 124 143-274 584-732 (972)
201 COG3769 Predicted hydrolase (H 97.1 0.0019 4E-08 51.4 6.5 36 148-183 28-63 (274)
202 TIGR01452 PGP_euk phosphoglyco 96.9 0.0095 2.1E-07 50.4 10.1 88 141-238 16-108 (279)
203 TIGR01494 ATPase_P-type ATPase 96.9 0.0052 1.1E-07 56.5 9.1 105 143-272 347-453 (499)
204 KOG2470 Similar to IMP-GMP spe 96.8 0.0026 5.7E-08 53.9 5.4 98 144-241 241-375 (510)
205 PLN03190 aminophospholipid tra 96.7 0.0053 1.2E-07 61.7 7.8 52 214-273 872-923 (1178)
206 PRK10444 UMP phosphatase; Prov 96.3 0.044 9.6E-07 45.5 9.5 99 143-241 17-142 (248)
207 COG4502 5'(3')-deoxyribonucleo 96.0 0.032 7E-07 41.2 6.4 105 140-275 65-178 (180)
208 PF06189 5-nucleotidase: 5'-nu 96.0 0.085 1.8E-06 43.4 9.5 70 159-241 186-258 (264)
209 KOG2116 Protein involved in pl 95.8 0.02 4.4E-07 52.6 5.9 92 145-237 560-673 (738)
210 COG2216 KdpB High-affinity K+ 95.7 0.033 7.1E-07 50.0 6.5 89 143-240 447-535 (681)
211 KOG3189 Phosphomannomutase [Li 95.4 0.057 1.2E-06 42.4 6.2 43 143-189 28-74 (252)
212 COG1877 OtsB Trehalose-6-phosp 95.3 0.038 8.3E-07 46.1 5.5 42 141-182 38-80 (266)
213 COG4850 Uncharacterized conser 95.2 0.37 8E-06 40.9 10.7 84 141-229 194-293 (373)
214 TIGR01458 HAD-SF-IIA-hyp3 HAD- 95.2 0.027 5.9E-07 47.1 4.3 47 144-190 22-73 (257)
215 PF05822 UMPH-1: Pyrimidine 5' 95.0 0.034 7.3E-07 45.7 4.2 91 140-233 87-198 (246)
216 TIGR01658 EYA-cons_domain eyes 94.6 0.18 4E-06 41.0 7.1 79 160-242 177-258 (274)
217 KOG4549 Magnesium-dependent ph 94.3 0.3 6.6E-06 35.4 6.9 86 141-227 42-135 (144)
218 COG5083 SMP2 Uncharacterized p 94.1 0.14 3.1E-06 45.0 6.1 89 145-236 405-516 (580)
219 TIGR01460 HAD-SF-IIA Haloacid 94.0 0.67 1.5E-05 38.1 9.8 50 141-190 12-67 (236)
220 PTZ00174 phosphomannomutase; P 93.9 0.07 1.5E-06 44.3 3.8 43 194-241 185-231 (247)
221 PLN03063 alpha,alpha-trehalose 93.7 0.13 2.9E-06 50.0 5.8 41 142-182 531-572 (797)
222 PLN03064 alpha,alpha-trehalose 93.2 0.14 3E-06 50.3 4.9 41 142-182 621-662 (934)
223 KOG0204 Calcium transporting A 92.9 0.55 1.2E-05 45.0 8.2 121 143-271 647-790 (1034)
224 TIGR01456 CECR5 HAD-superfamil 92.6 0.62 1.3E-05 40.3 7.7 87 140-239 13-109 (321)
225 PF02358 Trehalose_PPase: Treh 92.2 0.17 3.6E-06 41.6 3.6 38 198-236 166-206 (235)
226 PRK12702 mannosyl-3-phosphogly 92.2 1.3 2.8E-05 37.6 8.7 44 195-239 206-251 (302)
227 KOG2882 p-Nitrophenyl phosphat 92.1 1.3 2.9E-05 37.3 8.7 92 140-241 35-132 (306)
228 KOG0206 P-type ATPase [General 91.6 2.3 5E-05 42.8 11.0 29 141-169 649-677 (1151)
229 KOG1605 TFIIF-interacting CTD 90.8 0.025 5.5E-07 46.9 -2.6 92 142-237 130-224 (262)
230 KOG0210 P-type ATPase [Inorgan 90.7 0.97 2.1E-05 42.5 7.0 116 145-272 713-832 (1051)
231 PRK00192 mannosyl-3-phosphogly 90.6 0.47 1E-05 39.9 4.8 41 143-183 21-61 (273)
232 TIGR02463 MPGP_rel mannosyl-3- 90.1 0.56 1.2E-05 38.0 4.8 39 145-183 18-56 (221)
233 TIGR01486 HAD-SF-IIB-MPGP mann 89.8 0.9 1.9E-05 37.8 5.8 39 145-183 18-56 (256)
234 PRK01158 phosphoglycolate phos 89.7 0.62 1.4E-05 37.9 4.7 41 143-183 20-60 (230)
235 PRK10530 pyridoxal phosphate ( 88.9 0.82 1.8E-05 38.2 5.0 41 143-183 20-60 (272)
236 PRK03669 mannosyl-3-phosphogly 88.4 1.1 2.3E-05 37.7 5.4 40 144-183 25-64 (271)
237 KOG3128 Uncharacterized conser 88.4 1.1 2.3E-05 36.9 4.9 92 141-233 136-247 (298)
238 TIGR01482 SPP-subfamily Sucros 87.9 1 2.2E-05 36.5 4.8 41 143-183 15-55 (225)
239 KOG3107 Predicted haloacid deh 86.9 2.5 5.5E-05 36.8 6.6 77 161-242 373-452 (468)
240 KOG0203 Na+/K+ ATPase, alpha s 84.1 1 2.2E-05 43.2 3.3 96 143-239 590-730 (1019)
241 PF06437 ISN1: IMP-specific 5' 83.9 2.9 6.2E-05 36.6 5.6 16 67-82 146-161 (408)
242 KOG0209 P-type ATPase [Inorgan 83.8 3.8 8.3E-05 39.6 6.7 43 141-183 673-715 (1160)
243 TIGR01485 SPP_plant-cyano sucr 82.6 2.3 5E-05 35.2 4.6 46 144-189 22-68 (249)
244 PF02571 CbiJ: Precorrin-6x re 82.3 27 0.0006 29.0 11.9 120 141-274 111-249 (249)
245 COG2099 CobK Precorrin-6x redu 80.7 31 0.00068 28.6 11.9 95 140-243 109-231 (257)
246 TIGR00715 precor6x_red precorr 79.9 34 0.00074 28.5 12.4 61 201-275 188-254 (256)
247 KOG0780 Signal recognition par 79.7 14 0.00029 32.8 8.2 58 184-242 184-249 (483)
248 KOG0323 TFIIF-interacting CTD 78.9 3.1 6.8E-05 39.1 4.4 52 140-192 198-253 (635)
249 KOG2469 IMP-GMP specific 5'-nu 77.7 9.1 0.0002 33.8 6.6 99 144-242 199-334 (424)
250 PRK11840 bifunctional sulfur c 77.0 48 0.001 28.7 10.6 95 140-242 175-279 (326)
251 COG0731 Fe-S oxidoreductases [ 76.7 5 0.00011 34.1 4.7 38 141-181 90-128 (296)
252 PLN02588 glycerol-3-phosphate 74.8 26 0.00056 32.3 8.9 36 153-191 140-176 (525)
253 PF06437 ISN1: IMP-specific 5' 74.5 6.6 0.00014 34.4 4.9 43 198-242 350-400 (408)
254 PF06014 DUF910: Bacterial pro 74.0 2 4.4E-05 27.1 1.3 25 202-231 7-31 (62)
255 TIGR02471 sucr_syn_bact_C sucr 73.4 8 0.00017 31.6 5.1 39 150-189 22-61 (236)
256 PF13580 SIS_2: SIS domain; PD 73.2 25 0.00055 26.0 7.4 98 143-241 19-137 (138)
257 TIGR02468 sucrsPsyn_pln sucros 72.6 14 0.0003 37.3 7.2 70 171-241 924-1001(1050)
258 TIGR02329 propionate_PrpR prop 72.1 25 0.00054 32.8 8.5 86 147-242 85-171 (526)
259 KOG2832 TFIIF-interacting CTD 72.0 9.8 0.00021 33.2 5.3 76 143-223 214-293 (393)
260 PRK14502 bifunctional mannosyl 70.3 11 0.00023 36.1 5.7 40 144-183 434-473 (694)
261 cd04728 ThiG Thiazole synthase 69.7 63 0.0014 26.7 11.1 94 141-242 102-205 (248)
262 cd01421 IMPCH Inosine monophos 68.2 25 0.00054 27.8 6.5 70 145-220 10-98 (187)
263 KOG0208 Cation transport ATPas 68.1 18 0.0004 35.8 6.7 40 143-182 705-744 (1140)
264 PF02593 dTMP_synthase: Thymid 68.1 13 0.00027 30.2 4.9 90 142-235 58-155 (217)
265 KOG1618 Predicted phosphatase 66.2 6.7 0.00015 33.6 3.1 49 194-242 269-341 (389)
266 PRK15424 propionate catabolism 66.2 37 0.0008 31.8 8.2 86 147-242 95-181 (538)
267 PRK00994 F420-dependent methyl 65.5 76 0.0017 26.1 10.3 82 158-242 30-117 (277)
268 PF06506 PrpR_N: Propionate ca 65.1 12 0.00026 29.2 4.3 81 148-241 66-150 (176)
269 PF10307 DUF2410: Hypothetical 63.6 75 0.0016 25.4 8.9 84 148-233 59-152 (197)
270 cd01948 EAL EAL domain. This d 62.9 34 0.00075 27.5 6.9 88 148-239 134-228 (240)
271 COG0541 Ffh Signal recognition 62.1 34 0.00074 30.8 6.9 99 143-242 138-248 (451)
272 PRK13762 tRNA-modifying enzyme 61.7 15 0.00032 31.9 4.6 29 143-171 142-170 (322)
273 PF14336 DUF4392: Domain of un 60.5 30 0.00066 29.5 6.2 24 145-168 62-85 (291)
274 COG0381 WecB UDP-N-acetylgluco 59.8 67 0.0014 28.5 8.2 90 149-242 20-124 (383)
275 PF04413 Glycos_transf_N: 3-De 59.5 18 0.00038 28.6 4.3 69 150-227 109-184 (186)
276 PF05690 ThiG: Thiazole biosyn 59.5 1E+02 0.0022 25.5 11.0 95 140-242 101-205 (247)
277 cd05007 SIS_Etherase N-acetylm 58.7 1.1E+02 0.0023 25.6 10.2 91 151-242 42-153 (257)
278 TIGR00355 purH phosphoribosyla 57.6 56 0.0012 30.2 7.5 70 145-221 10-99 (511)
279 PRK00208 thiG thiazole synthas 56.8 1.1E+02 0.0025 25.3 10.9 94 141-242 102-205 (250)
280 COG3769 Predicted hydrolase (H 56.7 44 0.00096 27.2 6.0 89 145-241 136-235 (274)
281 PF04007 DUF354: Protein of un 56.6 1E+02 0.0023 26.9 8.9 87 149-242 17-111 (335)
282 TIGR02244 HAD-IG-Ncltidse HAD 56.1 6.8 0.00015 34.2 1.6 16 66-81 10-25 (343)
283 PF13911 AhpC-TSA_2: AhpC/TSA 55.3 37 0.00081 24.0 5.2 39 150-189 4-42 (115)
284 KOG0205 Plasma membrane H+-tra 55.2 53 0.0012 31.4 7.0 95 143-238 492-608 (942)
285 smart00540 LEM in nuclear memb 55.1 13 0.00028 21.7 2.1 32 149-180 9-40 (44)
286 TIGR03278 methan_mark_10 putat 54.4 1.6E+02 0.0036 26.4 10.4 41 143-183 86-130 (404)
287 KOG0207 Cation transport ATPas 54.1 56 0.0012 32.3 7.3 46 194-241 723-768 (951)
288 PRK10076 pyruvate formate lyas 53.6 26 0.00057 28.3 4.5 38 143-180 50-90 (213)
289 TIGR03151 enACPred_II putative 51.7 1.6E+02 0.0034 25.4 9.6 86 150-242 100-191 (307)
290 PF00578 AhpC-TSA: AhpC/TSA fa 51.6 31 0.00068 24.4 4.4 43 146-188 46-88 (124)
291 TIGR02826 RNR_activ_nrdG3 anae 51.5 27 0.00058 26.4 4.0 35 145-179 74-109 (147)
292 TIGR03590 PseG pseudaminic aci 50.7 1.5E+02 0.0033 24.9 12.3 32 151-182 23-54 (279)
293 COG4483 Uncharacterized protei 50.1 18 0.00039 23.0 2.3 25 202-231 7-31 (68)
294 TIGR03365 Bsubt_queE 7-cyano-7 49.4 17 0.00036 29.9 2.8 28 144-171 85-112 (238)
295 TIGR00236 wecB UDP-N-acetylglu 48.1 1E+02 0.0022 26.9 7.7 90 148-241 16-117 (365)
296 TIGR02495 NrdG2 anaerobic ribo 47.0 45 0.00097 26.1 4.9 29 143-171 74-102 (191)
297 TIGR01369 CPSaseII_lrg carbamo 47.0 3.4E+02 0.0073 28.0 12.0 67 200-276 129-195 (1050)
298 cd06533 Glyco_transf_WecG_TagA 46.9 94 0.002 24.0 6.6 73 148-223 35-109 (171)
299 COG1922 WecG Teichoic acid bio 46.6 72 0.0016 26.6 6.0 73 148-223 97-171 (253)
300 COG1834 N-Dimethylarginine dim 46.6 1.2E+02 0.0027 25.5 7.4 38 196-233 91-147 (267)
301 cd05008 SIS_GlmS_GlmD_1 SIS (S 46.4 25 0.00055 25.2 3.1 30 145-174 59-88 (126)
302 PRK03692 putative UDP-N-acetyl 45.9 1E+02 0.0022 25.6 6.8 71 149-222 95-166 (243)
303 cd05014 SIS_Kpsf KpsF-like pro 45.5 21 0.00047 25.7 2.7 30 145-174 60-89 (128)
304 PRK00881 purH bifunctional pho 45.3 82 0.0018 29.2 6.7 71 145-220 14-103 (513)
305 cd01445 TST_Repeats Thiosulfat 44.9 75 0.0016 23.5 5.5 48 194-241 75-129 (138)
306 PF02606 LpxK: Tetraacyldisacc 44.6 81 0.0018 27.4 6.4 79 145-235 51-149 (326)
307 smart00052 EAL Putative diguan 44.0 1.5E+02 0.0033 23.6 7.8 88 148-239 135-229 (241)
308 PF07453 NUMOD1: NUMOD1 domain 44.0 34 0.00075 18.7 2.7 29 69-98 2-30 (37)
309 PF02358 Trehalose_PPase: Treh 43.9 20 0.00044 29.2 2.5 10 72-81 1-10 (235)
310 PF03020 LEM: LEM domain; Int 43.2 5.3 0.00011 23.2 -0.7 31 150-180 10-40 (43)
311 PRK08057 cobalt-precorrin-6x r 42.7 51 0.0011 27.4 4.7 64 200-276 180-247 (248)
312 TIGR02109 PQQ_syn_pqqE coenzym 42.3 59 0.0013 28.5 5.3 40 143-183 65-107 (358)
313 CHL00162 thiG thiamin biosynth 42.1 2.1E+02 0.0045 24.0 10.6 95 140-242 115-219 (267)
314 KOG1359 Glycine C-acetyltransf 41.6 23 0.0005 30.1 2.5 94 145-244 273-378 (417)
315 PF04123 DUF373: Domain of unk 41.6 83 0.0018 27.6 5.9 61 149-231 54-116 (344)
316 PRK05301 pyrroloquinoline quin 41.3 55 0.0012 28.9 5.0 41 142-183 73-116 (378)
317 TIGR01858 tag_bisphos_ald clas 40.9 2.3E+02 0.0049 24.1 8.5 91 148-243 4-104 (282)
318 PF03332 PMM: Eukaryotic phosp 40.8 73 0.0016 25.9 5.1 27 148-175 1-27 (220)
319 PLN02423 phosphomannomutase 40.7 58 0.0013 26.8 4.8 36 143-179 24-59 (245)
320 TIGR00696 wecB_tagA_cpsF bacte 40.7 1.5E+02 0.0032 23.2 6.7 70 149-222 38-109 (177)
321 PRK09348 glyQ glycyl-tRNA synt 40.6 31 0.00066 28.6 2.9 45 196-241 85-135 (283)
322 PRK01372 ddl D-alanine--D-alan 40.5 2.2E+02 0.0049 24.0 10.4 113 150-275 47-165 (304)
323 cd05710 SIS_1 A subgroup of th 40.5 34 0.00073 24.6 3.0 29 145-173 60-88 (120)
324 COG0191 Fba Fructose/tagatose 40.4 1.4E+02 0.0031 25.3 6.9 93 147-242 5-106 (286)
325 KOG2469 IMP-GMP specific 5'-nu 39.9 14 0.0003 32.7 1.0 16 66-81 25-40 (424)
326 cd00733 GlyRS_alpha_core Class 39.8 32 0.00069 28.4 2.9 45 196-241 81-131 (279)
327 COG0378 HypB Ni2+-binding GTPa 39.8 2E+02 0.0043 23.1 7.3 119 148-273 30-159 (202)
328 COG1179 Dinucleotide-utilizing 39.5 1.4E+02 0.003 24.8 6.5 23 145-167 132-154 (263)
329 cd05017 SIS_PGI_PMI_1 The memb 39.2 64 0.0014 23.0 4.3 36 145-182 56-91 (119)
330 PLN02334 ribulose-phosphate 3- 39.0 2.1E+02 0.0046 23.2 10.2 94 146-241 102-202 (229)
331 cd06537 CIDE_N_B CIDE_N domain 38.4 17 0.00038 24.3 1.0 16 69-84 40-55 (81)
332 PF09269 DUF1967: Domain of un 38.3 30 0.00066 22.3 2.2 22 201-222 44-65 (69)
333 PF03808 Glyco_tran_WecB: Glyc 38.2 1.5E+02 0.0033 22.8 6.5 73 148-223 37-111 (172)
334 cd06831 PLPDE_III_ODC_like_AZI 38.1 2.4E+02 0.0052 25.2 8.6 18 150-167 50-67 (394)
335 PRK05752 uroporphyrinogen-III 38.0 1.2E+02 0.0027 25.0 6.4 21 144-164 11-31 (255)
336 PF09949 DUF2183: Uncharacteri 37.9 57 0.0012 22.9 3.6 33 198-232 51-83 (100)
337 PF05761 5_nucleotid: 5' nucle 37.6 21 0.00045 32.5 1.8 16 66-81 10-25 (448)
338 cd06539 CIDE_N_A CIDE_N domain 37.5 18 0.0004 24.0 1.0 17 68-84 40-56 (78)
339 KOG2018 Predicted dinucleotide 37.4 1.3E+02 0.0028 26.0 6.2 46 146-191 177-245 (430)
340 TIGR00388 glyQ glycyl-tRNA syn 37.3 37 0.00081 28.3 3.0 45 196-241 82-132 (293)
341 cd04256 AAK_P5CS_ProBA AAK_P5C 36.7 40 0.00087 28.6 3.3 75 147-221 35-128 (284)
342 TIGR00877 purD phosphoribosyla 36.6 3.1E+02 0.0068 24.5 10.0 118 146-276 51-173 (423)
343 PLN02382 probable sucrose-phos 36.2 82 0.0018 28.4 5.3 41 149-189 35-76 (413)
344 PF02222 ATP-grasp: ATP-grasp 36.2 1.4E+02 0.0031 23.2 6.0 60 206-275 1-61 (172)
345 PF01993 MTD: methylene-5,6,7, 35.9 1.2E+02 0.0025 25.1 5.5 79 158-242 29-116 (276)
346 smart00266 CAD Domains present 35.9 21 0.00045 23.5 1.1 17 68-84 38-54 (74)
347 COG2897 SseA Rhodanese-related 35.9 78 0.0017 26.9 4.8 51 193-244 69-125 (285)
348 PLN02891 IMP cyclohydrolase 35.8 1.3E+02 0.0029 27.9 6.5 71 145-220 32-121 (547)
349 PF01380 SIS: SIS domain SIS d 35.8 49 0.0011 23.7 3.3 30 145-174 66-95 (131)
350 COG2022 ThiG Uncharacterized e 35.7 2.5E+02 0.0055 23.2 9.6 95 140-242 108-212 (262)
351 PF12261 T_hemolysin: Thermost 35.5 80 0.0017 24.8 4.5 34 150-185 107-140 (179)
352 cd03017 PRX_BCP Peroxiredoxin 35.0 1.1E+02 0.0023 22.2 5.1 40 146-185 44-83 (140)
353 TIGR03127 RuMP_HxlB 6-phospho 34.7 44 0.00096 25.9 3.0 30 145-174 85-114 (179)
354 COG5426 Uncharacterized membra 34.5 1.4E+02 0.003 23.8 5.6 79 140-221 26-118 (254)
355 TIGR03470 HpnH hopanoid biosyn 33.8 47 0.001 28.7 3.3 29 142-170 83-111 (318)
356 PHA02575 1 deoxynucleoside mon 33.3 2.7E+02 0.0059 22.8 9.3 102 166-276 113-225 (227)
357 PHA01976 helix-turn-helix prot 33.2 25 0.00054 22.1 1.2 43 174-216 19-61 (67)
358 TIGR03595 Obg_CgtA_exten Obg f 33.1 47 0.001 21.4 2.4 55 162-222 10-65 (69)
359 cd03018 PRX_AhpE_like Peroxire 33.0 1E+02 0.0022 22.7 4.7 40 146-185 49-88 (149)
360 cd04795 SIS SIS domain. SIS (S 33.0 46 0.00099 21.8 2.5 22 145-166 60-81 (87)
361 PF05240 APOBEC_C: APOBEC-like 32.9 44 0.00096 20.6 2.1 22 146-167 2-23 (55)
362 cd05013 SIS_RpiR RpiR-like pro 32.9 48 0.001 23.9 2.9 27 146-172 74-100 (139)
363 smart00497 IENR1 Intron encode 32.8 61 0.0013 19.1 2.8 30 68-98 2-31 (53)
364 COG0052 RpsB Ribosomal protein 32.4 3E+02 0.0064 22.9 11.8 50 214-272 157-209 (252)
365 PF13701 DDE_Tnp_1_4: Transpos 32.3 79 0.0017 28.8 4.6 18 67-84 138-155 (448)
366 PF03193 DUF258: Protein of un 32.2 1.1E+02 0.0024 23.5 4.8 57 149-208 2-58 (161)
367 PRK11145 pflA pyruvate formate 32.2 90 0.002 25.6 4.7 36 144-179 83-123 (246)
368 PRK10886 DnaA initiator-associ 32.1 2.6E+02 0.0056 22.2 11.1 98 145-242 27-144 (196)
369 PF00532 Peripla_BP_1: Peripla 32.0 3E+02 0.0066 23.0 8.0 55 151-208 23-78 (279)
370 cd05006 SIS_GmhA Phosphoheptos 32.0 46 0.001 25.7 2.7 28 144-171 113-140 (177)
371 PRK12570 N-acetylmuramic acid- 31.7 3.3E+02 0.0071 23.3 11.6 89 152-242 52-162 (296)
372 TIGR00190 thiC thiamine biosyn 31.7 3.3E+02 0.0071 24.5 7.9 56 123-178 138-194 (423)
373 TIGR02493 PFLA pyruvate format 31.2 91 0.002 25.2 4.5 37 143-179 77-118 (235)
374 KOG0208 Cation transport ATPas 30.8 2E+02 0.0044 29.1 7.0 88 145-235 649-744 (1140)
375 cd01766 Ufm1 Urm1-like ubiquit 30.5 75 0.0016 20.8 2.9 40 195-235 25-64 (82)
376 PLN02951 Molybderin biosynthes 30.5 2.2E+02 0.0048 25.2 7.0 28 143-170 118-147 (373)
377 cd01580 AcnA_IRP_Swivel Aconit 30.4 2.2E+02 0.0047 22.1 5.9 57 148-212 84-146 (171)
378 PRK13937 phosphoheptose isomer 30.3 57 0.0012 25.6 3.0 30 144-173 118-147 (188)
379 cd01615 CIDE_N CIDE_N domain, 30.2 29 0.00063 23.1 1.1 17 68-84 40-56 (78)
380 PF01976 DUF116: Protein of un 30.2 1.4E+02 0.0031 22.8 5.1 39 147-189 74-112 (158)
381 PRK13789 phosphoribosylamine-- 30.1 4.2E+02 0.0091 24.0 10.1 118 146-276 55-176 (426)
382 PRK13790 phosphoribosylamine-- 29.9 3.9E+02 0.0085 23.6 10.4 117 146-276 14-135 (379)
383 PRK13352 thiamine biosynthesis 29.8 3E+02 0.0066 24.8 7.5 55 123-177 141-196 (431)
384 PF13756 Stimulus_sens_1: Stim 29.3 39 0.00084 24.2 1.7 19 67-85 18-37 (112)
385 COG0626 MetC Cystathionine bet 29.2 4.3E+02 0.0092 23.8 11.9 13 255-267 198-210 (396)
386 TIGR03572 WbuZ glycosyl amidat 29.1 3.1E+02 0.0067 22.1 9.1 41 197-241 184-227 (232)
387 COG0019 LysA Diaminopimelate d 29.0 4.3E+02 0.0092 23.7 9.3 32 210-241 93-125 (394)
388 PF08444 Gly_acyl_tr_C: Aralky 28.8 1.1E+02 0.0024 21.0 3.7 34 150-183 43-76 (89)
389 PRK08883 ribulose-phosphate 3- 28.8 3.2E+02 0.0069 22.2 8.0 94 145-241 92-195 (220)
390 cd06536 CIDE_N_ICAD CIDE_N dom 28.6 30 0.00064 23.2 0.9 16 69-84 43-58 (80)
391 PRK10669 putative cation:proto 28.5 5E+02 0.011 24.4 9.8 113 149-277 430-548 (558)
392 COG5190 FCP1 TFIIF-interacting 28.1 1.6E+02 0.0034 26.3 5.6 81 143-227 252-334 (390)
393 COG0263 ProB Glutamate 5-kinas 28.0 3E+02 0.0065 24.3 7.0 24 146-169 31-54 (369)
394 PTZ00082 L-lactate dehydrogena 28.0 3.5E+02 0.0075 23.4 7.6 74 148-223 108-185 (321)
395 PF03033 Glyco_transf_28: Glyc 27.5 99 0.0022 22.3 3.8 34 149-185 16-49 (139)
396 TIGR00441 gmhA phosphoheptose 27.4 60 0.0013 24.5 2.6 29 145-173 92-120 (154)
397 TIGR01426 MGT glycosyltransfer 27.1 4.3E+02 0.0093 23.2 9.7 91 148-241 12-120 (392)
398 KOG1154 Gamma-glutamyl kinase 27.1 2.3E+02 0.0049 23.5 5.8 80 148-228 37-129 (285)
399 TIGR00237 xseA exodeoxyribonuc 27.1 3.7E+02 0.0081 24.4 8.0 61 160-220 130-194 (432)
400 cd05005 SIS_PHI Hexulose-6-pho 27.0 67 0.0014 24.9 2.9 30 145-174 88-117 (179)
401 COG0036 Rpe Pentose-5-phosphat 26.9 2.6E+02 0.0056 22.8 6.1 96 143-240 93-196 (220)
402 PRK15317 alkyl hydroperoxide r 26.9 2.9E+02 0.0063 25.6 7.5 99 140-242 126-242 (517)
403 PRK01045 ispH 4-hydroxy-3-meth 26.7 3.6E+02 0.0078 23.2 7.3 54 162-223 69-123 (298)
404 cd03334 Fab1_TCP TCP-1 like do 26.5 2.2E+02 0.0049 23.7 6.1 36 148-183 119-154 (261)
405 cd06538 CIDE_N_FSP27 CIDE_N do 26.5 34 0.00074 22.8 0.9 16 69-84 40-55 (79)
406 PRK12388 fructose-1,6-bisphosp 26.3 93 0.002 26.7 3.6 27 145-171 163-189 (321)
407 PF12844 HTH_19: Helix-turn-he 26.3 19 0.0004 22.4 -0.4 44 173-216 15-58 (64)
408 PF00875 DNA_photolyase: DNA p 26.3 74 0.0016 24.2 3.0 44 144-189 51-94 (165)
409 TIGR02494 PFLE_PFLC glycyl-rad 26.2 1.1E+02 0.0025 25.7 4.4 28 143-170 137-165 (295)
410 cd02971 PRX_family Peroxiredox 26.1 1.8E+02 0.0038 21.0 5.0 41 145-185 42-83 (140)
411 PRK00414 gmhA phosphoheptose i 25.9 77 0.0017 25.1 3.1 29 145-173 124-152 (192)
412 COG1180 PflA Pyruvate-formate 25.6 62 0.0013 27.1 2.6 27 145-171 98-124 (260)
413 PF06901 FrpC: RTX iron-regula 25.5 37 0.00081 26.8 1.1 13 68-80 58-70 (271)
414 PRK05294 carB carbamoyl phosph 25.3 7.7E+02 0.017 25.5 12.1 122 149-280 31-200 (1066)
415 KOG0538 Glycolate oxidase [Ene 25.1 1.3E+02 0.0027 26.0 4.2 51 216-276 226-276 (363)
416 COG2022 ThiG Uncharacterized e 25.0 4E+02 0.0086 22.1 9.3 94 145-239 55-156 (262)
417 TIGR01501 MthylAspMutase methy 24.9 2.9E+02 0.0063 20.5 6.7 37 202-239 72-115 (134)
418 TIGR02068 cya_phycin_syn cyano 24.8 1.6E+02 0.0034 29.5 5.6 119 141-276 154-282 (864)
419 TIGR03140 AhpF alkyl hydropero 24.6 4.2E+02 0.0091 24.6 8.1 98 140-241 127-242 (515)
420 smart00481 POLIIIAc DNA polyme 24.6 1E+02 0.0022 19.3 2.9 23 147-169 16-38 (67)
421 cd01516 FBPase_glpX Bacterial 24.5 1.2E+02 0.0025 26.0 3.9 79 145-223 163-260 (309)
422 TIGR00682 lpxK tetraacyldisacc 24.5 53 0.0012 28.3 2.0 90 146-241 45-146 (311)
423 COG0854 PdxJ Pyridoxal phospha 24.5 3.8E+02 0.0083 21.9 6.5 49 145-194 110-158 (243)
424 COG0752 GlyQ Glycyl-tRNA synth 24.4 76 0.0017 26.2 2.7 45 196-241 86-136 (298)
425 COG2044 Predicted peroxiredoxi 24.4 1.1E+02 0.0024 22.2 3.3 27 143-169 59-85 (120)
426 PRK00066 ldh L-lactate dehydro 24.3 2.9E+02 0.0063 23.8 6.5 73 149-223 103-179 (315)
427 PRK09479 glpX fructose 1,6-bis 24.1 1.3E+02 0.0029 25.8 4.2 28 145-172 166-193 (319)
428 PF01071 GARS_A: Phosphoribosy 24.0 3.3E+02 0.0072 21.7 6.2 68 201-277 5-72 (194)
429 PRK01713 ornithine carbamoyltr 23.9 4.9E+02 0.011 22.7 11.3 93 146-242 89-189 (334)
430 PF08889 WbqC: WbqC-like prote 23.8 2E+02 0.0043 23.3 5.1 96 140-241 85-184 (219)
431 PRK00994 F420-dependent methyl 23.7 1.4E+02 0.0029 24.7 3.9 40 144-183 72-111 (277)
432 cd02970 PRX_like2 Peroxiredoxi 23.7 2.1E+02 0.0045 20.8 5.0 40 146-185 44-83 (149)
433 PRK13938 phosphoheptose isomer 23.7 87 0.0019 24.9 2.9 29 145-173 126-154 (196)
434 COG2241 CobL Precorrin-6B meth 23.7 3.5E+02 0.0077 21.9 6.4 75 159-241 68-147 (210)
435 cd04906 ACT_ThrD-I_1 First of 23.6 91 0.002 20.8 2.7 22 148-169 55-76 (85)
436 PRK00286 xseA exodeoxyribonucl 23.3 5.6E+02 0.012 23.2 11.1 61 160-220 136-199 (438)
437 PRK05441 murQ N-acetylmuramic 23.3 4.7E+02 0.01 22.3 10.0 93 149-242 53-166 (299)
438 PF04007 DUF354: Protein of un 23.3 5.1E+02 0.011 22.6 9.5 106 148-275 201-307 (335)
439 PRK12314 gamma-glutamyl kinase 22.9 65 0.0014 27.0 2.2 73 147-223 35-113 (266)
440 PF11181 YflT: Heat induced st 22.7 1.5E+02 0.0032 20.7 3.7 65 146-215 10-86 (103)
441 PF08620 RPAP1_C: RPAP1-like, 22.7 33 0.00071 22.5 0.3 10 71-80 3-12 (73)
442 cd08612 GDPD_GDE4 Glycerophosp 22.6 2.2E+02 0.0047 24.3 5.4 38 149-189 251-288 (300)
443 PRK12415 fructose 1,6-bisphosp 22.5 1.2E+02 0.0026 26.2 3.6 79 145-223 164-261 (322)
444 PRK13890 conjugal transfer pro 22.4 56 0.0012 23.7 1.5 53 174-227 22-74 (120)
445 TIGR01756 LDH_protist lactate 22.3 2.8E+02 0.006 24.0 6.0 71 150-223 91-168 (313)
446 cd02072 Glm_B12_BD B12 binding 22.2 3.3E+02 0.0071 20.1 7.1 13 227-239 101-113 (128)
447 cd01965 Nitrogenase_MoFe_beta_ 22.2 3.6E+02 0.0079 24.3 7.0 42 198-240 170-229 (428)
448 PRK12737 gatY tagatose-bisphos 22.2 4.9E+02 0.011 22.1 9.2 91 148-243 6-106 (284)
449 cd05212 NAD_bind_m-THF_DH_Cycl 22.2 3.4E+02 0.0074 20.2 6.1 24 200-223 13-38 (140)
450 smart00455 RBD Raf-like Ras-bi 22.1 84 0.0018 20.3 2.1 28 192-219 16-43 (70)
451 PLN02735 carbamoyl-phosphate s 22.0 2.8E+02 0.006 28.8 6.7 91 149-242 502-616 (1102)
452 PLN03063 alpha,alpha-trehalose 21.9 4.3E+02 0.0092 26.3 7.8 75 194-277 675-785 (797)
453 PRK13717 conjugal transfer pro 21.8 39 0.00085 24.7 0.6 13 68-80 45-57 (128)
454 PRK14129 heat shock protein Hs 21.7 87 0.0019 22.1 2.2 19 67-85 18-36 (105)
455 TIGR00216 ispH_lytB (E)-4-hydr 21.5 5.1E+02 0.011 22.0 7.3 49 167-223 74-123 (280)
456 PF08445 FR47: FR47-like prote 21.4 2.6E+02 0.0056 18.6 4.7 35 149-183 44-78 (86)
457 TIGR01101 V_ATP_synt_F vacuola 21.2 3.3E+02 0.0071 19.7 5.3 63 146-208 46-111 (115)
458 COG0826 Collagenase and relate 21.1 5.8E+02 0.012 22.5 9.6 88 144-241 47-144 (347)
459 TIGR01285 nifN nitrogenase mol 21.0 6.3E+02 0.014 22.9 9.7 77 159-241 311-398 (432)
460 PF13704 Glyco_tranf_2_4: Glyc 21.0 1.8E+02 0.0039 19.5 3.9 33 148-180 7-40 (97)
461 PF01993 MTD: methylene-5,6,7, 20.9 99 0.0021 25.5 2.7 40 144-183 71-110 (276)
462 TIGR03772 anch_rpt_subst ancho 20.9 6.8E+02 0.015 23.2 9.9 89 146-240 358-451 (479)
463 PRK00208 thiG thiazole synthas 20.8 5E+02 0.011 21.7 7.4 87 149-239 52-149 (250)
464 PF02017 CIDE-N: CIDE-N domain 20.8 47 0.001 22.1 0.7 16 69-84 41-56 (78)
465 PF05988 DUF899: Bacterial pro 20.7 3.1E+02 0.0067 22.2 5.4 43 147-189 94-136 (211)
466 COG3785 Uncharacterized conser 20.6 97 0.0021 21.8 2.2 26 67-92 27-52 (116)
467 PRK13936 phosphoheptose isomer 20.6 1.1E+02 0.0024 24.3 3.0 31 145-175 124-154 (197)
468 PRK06524 biotin carboxylase-li 20.6 7E+02 0.015 23.2 8.5 116 145-276 93-214 (493)
469 PLN00135 malate dehydrogenase 20.4 3.8E+02 0.0081 23.1 6.4 71 151-223 90-166 (309)
470 cd06589 GH31 The enzymes of gl 20.3 1.2E+02 0.0027 25.2 3.4 27 143-169 63-89 (265)
471 PF02350 Epimerase_2: UDP-N-ac 20.3 1.5E+02 0.0032 25.9 4.0 86 154-242 2-99 (346)
472 COG0602 NrdG Organic radical a 20.3 1.1E+02 0.0025 24.6 3.0 27 145-171 85-111 (212)
473 COG1225 Bcp Peroxiredoxin [Pos 20.2 2.6E+02 0.0057 21.4 4.8 40 148-187 53-92 (157)
474 PF14824 Sirohm_synth_M: Siroh 20.0 1.6E+02 0.0035 15.6 3.0 21 158-178 3-23 (30)
No 1
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=2.3e-30 Score=212.62 Aligned_cols=203 Identities=21% Similarity=0.231 Sum_probs=152.3
Q ss_pred CccEEEEeCCCcccCCCCCHHHHHHHHh---CCch--HHHHHh-cCCChhhHHHHhh-ccChhHHHHHHHHHHH-HHHhc
Q 023578 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVKA-ENPTGIDILHHIE-SWSPDLQRHAYQTIAD-FERQG 138 (280)
Q Consensus 67 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~--~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~ 138 (280)
++|+|+|||||||+|+...+..+++.++ |.+. ....+. .+.+......... .......++..+.+.. |....
T Consensus 11 ~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLAVAFPELDAAARDALIPEFLQRYEALI 90 (229)
T ss_pred cCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh
Confidence 4699999999999999998888887776 5432 222222 2333333333221 2233333333333333 33333
Q ss_pred CCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCc
Q 023578 139 LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNE 215 (280)
Q Consensus 139 ~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~ 215 (280)
.....++||+.++|+.|+++|++++++||+.....+..++.+|+. |+.+++++ .+..||+|++|..+++++|++|++
T Consensus 91 ~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~ 170 (229)
T PRK13226 91 GTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTD 170 (229)
T ss_pred hhcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhh
Confidence 345789999999999999999999999999999888899999987 88888876 678899999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHH
Q 023578 216 VMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSIL 272 (280)
Q Consensus 216 ~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l 272 (280)
|++|||+. +|+++|+++|+.+|++..+......... ..+++++++++.||.+++
T Consensus 171 ~l~IGDs~-~Di~aA~~aG~~~i~v~~g~~~~~~~~~--~~~~~~~i~~~~el~~~~ 224 (229)
T PRK13226 171 CVYVGDDE-RDILAARAAGMPSVAALWGYRLHDDDPL--AWQADVLVEQPQLLWNPA 224 (229)
T ss_pred EEEeCCCH-HHHHHHHHCCCcEEEEeecCCCCCcChh--hcCCCeeeCCHHHHHHHh
Confidence 99999999 9999999999999999753322221221 357999999999998875
No 2
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.97 E-value=1.5e-30 Score=211.85 Aligned_cols=202 Identities=21% Similarity=0.326 Sum_probs=154.6
Q ss_pred CccEEEEeCCCcccCCCCCHHHHHHHHh---CCch---HHHHHhcCCChhhHHHHhhccChhHHHHHHHHHHHHHHh-cC
Q 023578 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE---YKRVKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQ-GL 139 (280)
Q Consensus 67 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (280)
++|+|+||+||||+|+...+..++.+.+ +... .......|.+..+.... +.+...+.....+..+... ..
T Consensus 2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (214)
T PRK13288 2 KINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSK---IDESKVEEMITTYREFNHEHHD 78 (214)
T ss_pred CccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHh---cCHHHHHHHHHHHHHHHHHhhh
Confidence 4799999999999999987777777665 3221 22333345444444433 2333334443434333222 23
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCcE
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEV 216 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~ 216 (280)
....++||+.++|+.|+++|++++|+||+....++..++.+|+. |+.+++++ ....||+|+.++.+++++|++|+++
T Consensus 79 ~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~~ 158 (214)
T PRK13288 79 ELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEA 158 (214)
T ss_pred hhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCHHHE
Confidence 45679999999999999999999999999999999999999998 89998876 6788999999999999999999999
Q ss_pred EEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhc
Q 023578 217 MMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEAN 275 (280)
Q Consensus 217 v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~ 275 (280)
++|||+. +|+++|+++|+.++++.++... ..++. ...++++++++.++.+++...
T Consensus 159 ~~iGDs~-~Di~aa~~aG~~~i~v~~g~~~-~~~l~--~~~~~~~i~~~~~l~~~i~~~ 213 (214)
T PRK13288 159 LMVGDNH-HDILAGKNAGTKTAGVAWTIKG-REYLE--QYKPDFMLDKMSDLLAIVGDM 213 (214)
T ss_pred EEECCCH-HHHHHHHHCCCeEEEEcCCCCC-HHHHh--hcCcCEEECCHHHHHHHHhhc
Confidence 9999999 9999999999999999853211 11222 357999999999999987653
No 3
>PRK11587 putative phosphatase; Provisional
Probab=99.97 E-value=3.3e-30 Score=210.36 Aligned_cols=196 Identities=19% Similarity=0.268 Sum_probs=147.0
Q ss_pred CccEEEEeCCCcccCCCCCHHHHHHHHh---CCchHHHHHh-cCCChhhHHHHhh-ccChhHHHHHHHHHHHHHHhcCCC
Q 023578 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDEYKRVKA-ENPTGIDILHHIE-SWSPDLQRHAYQTIADFERQGLDR 141 (280)
Q Consensus 67 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 141 (280)
++|+|+|||||||+|+...+..++.+++ |.+....... .+.......+.+. ....+...........+.......
T Consensus 2 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAPDEVLNFIHGKQAITSLRHFMAGASEAEIQAEFTRLEQIEATDTEG 81 (218)
T ss_pred CCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCHHHHHHHHcCCCHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhcC
Confidence 4799999999999999998877777766 6554322222 3444444444432 122222222222222222333456
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc-ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCcEEEE
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEVMMV 219 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~v~i 219 (280)
..++||+.++|+.|+++|++++|+||+........++..|+. |+.+++++ ....||+|+.|..+++++|++|++|++|
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~~l~i 161 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVVV 161 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCCCccEEEEHHHhcCCCCCcHHHHHHHHHcCCCcccEEEE
Confidence 789999999999999999999999999888888888888887 77788765 6688999999999999999999999999
Q ss_pred cCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHH
Q 023578 220 GDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVL 269 (280)
Q Consensus 220 GDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~ 269 (280)
||+. .|+++|+++|+.+|+++++ +. ... ...++++++++.||.
T Consensus 162 gDs~-~di~aA~~aG~~~i~v~~~--~~--~~~--~~~~~~~~~~~~el~ 204 (218)
T PRK11587 162 EDAP-AGVLSGLAAGCHVIAVNAP--AD--TPR--LDEVDLVLHSLEQLT 204 (218)
T ss_pred ecch-hhhHHHHHCCCEEEEECCC--Cc--hhh--hccCCEEecchhhee
Confidence 9999 9999999999999999752 11 111 247999999999874
No 4
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.97 E-value=5.2e-30 Score=212.88 Aligned_cols=197 Identities=19% Similarity=0.283 Sum_probs=148.1
Q ss_pred CCccEEEEeCCCcccCCCCCHHHHHHHHh---CCc----h-HHH-HHh-cCCChhhHHHHhhccChhHHHHHHHHHHH-H
Q 023578 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAVL---GED----E-YKR-VKA-ENPTGIDILHHIESWSPDLQRHAYQTIAD-F 134 (280)
Q Consensus 66 ~~~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~----~-~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 134 (280)
.++|+|+|||||||+|+...+..++++++ |.+ . ... .+. .+....+....+.....+...+....... |
T Consensus 20 ~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 99 (248)
T PLN02770 20 APLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVENIAGKHNEDIALGLFPDDLERGLKFTDDKEALF 99 (248)
T ss_pred CccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHcCCCCHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 45899999999999999997777777665 322 1 221 222 34444444443322111111122222222 2
Q ss_pred HHhcCCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCC
Q 023578 135 ERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEV 211 (280)
Q Consensus 135 ~~~~~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi 211 (280)
.........++||+.++|+.|+++|++++|+||+....++..++++|+. |+.+++++ ...+||+|++|..+++++|+
T Consensus 100 ~~~~~~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~ 179 (248)
T PLN02770 100 RKLASEQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKV 179 (248)
T ss_pred HHHHHhcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCC
Confidence 2222345789999999999999999999999999999999999999998 89998876 67889999999999999999
Q ss_pred CCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHH
Q 023578 212 QPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTE 267 (280)
Q Consensus 212 ~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~d 267 (280)
+|++|++|||+. .|+++|+++|+.+|++.++ +...++. ..++++++.++.|
T Consensus 180 ~~~~~l~vgDs~-~Di~aA~~aGi~~i~v~~g--~~~~~l~--~~~a~~vi~~~~e 230 (248)
T PLN02770 180 SKDHTFVFEDSV-SGIKAGVAAGMPVVGLTTR--NPESLLM--EAKPTFLIKDYED 230 (248)
T ss_pred ChhHEEEEcCCH-HHHHHHHHCCCEEEEEeCC--CCHHHHh--hcCCCEEeccchh
Confidence 999999999999 9999999999999999853 2222222 3689999999999
No 5
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.97 E-value=1.6e-29 Score=206.26 Aligned_cols=205 Identities=23% Similarity=0.412 Sum_probs=156.1
Q ss_pred CCccEEEEeCCCcccCCCCCHHHHHHHHh---CCch--HHHHHh-cCCChhhHHHHhhccChhHHH-HHHHHHHH-HHHh
Q 023578 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVKA-ENPTGIDILHHIESWSPDLQR-HAYQTIAD-FERQ 137 (280)
Q Consensus 66 ~~~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~ 137 (280)
+++++|+||+||||+|+...+..+++..+ |.+. ...++. .+................... ...+.+.+ +...
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEADEEAAAELVERLREEFLTA 81 (220)
T ss_pred CCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Confidence 35899999999999999998888766554 6653 333333 444444455444332221111 22222222 2222
Q ss_pred cCC--CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCC
Q 023578 138 GLD--RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQ 212 (280)
Q Consensus 138 ~~~--~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~ 212 (280)
... ...++||+.++|..|+++|++++|+||.....++..++.+|+. |+.+++++ ....||+|..+..+++++|++
T Consensus 82 ~~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~~~ 161 (220)
T COG0546 82 YAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLD 161 (220)
T ss_pred HHhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhCCC
Confidence 222 3579999999999999999999999999999999999999999 99999954 778999999999999999999
Q ss_pred CCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHh
Q 023578 213 PNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEA 274 (280)
Q Consensus 213 ~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~ 274 (280)
|++++||||+. +|+++|+++|+.+++|.++.. ...... ...+|++++++.||..++.+
T Consensus 162 ~~~~l~VGDs~-~Di~aA~~Ag~~~v~v~~g~~-~~~~l~--~~~~d~vi~~~~el~~~l~~ 219 (220)
T COG0546 162 PEEALMVGDSL-NDILAAKAAGVPAVGVTWGYN-SREELA--QAGADVVIDSLAELLALLAE 219 (220)
T ss_pred hhheEEECCCH-HHHHHHHHcCCCEEEEECCCC-CCcchh--hcCCCEEECCHHHHHHHHhc
Confidence 88999999999 999999999999999986432 222222 47899999999999988764
No 6
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.97 E-value=1.7e-29 Score=206.61 Aligned_cols=201 Identities=17% Similarity=0.188 Sum_probs=153.6
Q ss_pred ccEEEEeCCCcccCCCCCHHHHHHHHh---CCch--HHHHH-hcCCChhhHHHHhh---ccChhHHHHHHHHHHHHH-Hh
Q 023578 68 LRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVK-AENPTGIDILHHIE---SWSPDLQRHAYQTIADFE-RQ 137 (280)
Q Consensus 68 ~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~--~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~ 137 (280)
+|+|+|||||||+|+...+..++++++ |.+. ....+ ..+....+.++.+. .......+.....+.+.+ ..
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWMGQSKIEAIRALLALDGADEAEAQAAFADFEERLAEA 80 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCHHHHHHhhcCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999998888888776 5543 22233 34555555555443 233333333433333322 22
Q ss_pred cC-CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc----ccceeeCC-CCCCCCChHHHHHHHHhcCC
Q 023578 138 GL-DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT----FSPALSRE-FRPYKPDPGPLLHICSTWEV 211 (280)
Q Consensus 138 ~~-~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~----fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi 211 (280)
+. ....++||+.++|++|+++|++++|+||+....++..++.+|+. |+.+++++ ....||+|++|..+++++|+
T Consensus 81 ~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~~ 160 (220)
T TIGR03351 81 YDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGV 160 (220)
T ss_pred hcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcCC
Confidence 22 24589999999999999999999999999999999999999985 88888865 66789999999999999999
Q ss_pred C-CCcEEEEcCCchhhHHHHHHcCCcE-EEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHH
Q 023578 212 Q-PNEVMMVGDSLKDDVACGKRAGAFT-CLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSIL 272 (280)
Q Consensus 212 ~-~~~~v~iGDs~~~Di~~a~~~G~~~-i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l 272 (280)
. |++|++|||+. +|+++|+++|+.+ +++.++.. ...... ..++++++.++.|+..++
T Consensus 161 ~~~~~~~~igD~~-~Di~aa~~aG~~~~i~~~~g~~-~~~~~~--~~~~~~~i~~~~~l~~~~ 219 (220)
T TIGR03351 161 QDVQSVAVAGDTP-NDLEAGINAGAGAVVGVLTGAH-DAEELS--RHPHTHVLDSVADLPALL 219 (220)
T ss_pred CChhHeEEeCCCH-HHHHHHHHCCCCeEEEEecCCC-cHHHHh--hcCCceeecCHHHHHHhh
Confidence 7 79999999999 9999999999999 88875322 222222 368999999999998875
No 7
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.97 E-value=2.5e-29 Score=209.80 Aligned_cols=202 Identities=16% Similarity=0.207 Sum_probs=146.7
Q ss_pred ccEEEEeCCCcccCCCC-CHHHHHHHHh---CCch-HH-HHHhcCCChhhHHHHhh-------------c--cChhHHHH
Q 023578 68 LRGVVFDMDGTLTVPVI-DFPAMYRAVL---GEDE-YK-RVKAENPTGIDILHHIE-------------S--WSPDLQRH 126 (280)
Q Consensus 68 ~k~iiFD~DGTL~d~~~-~~~~~~~~~~---g~~~-~~-~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~ 126 (280)
+|+|+|||||||+|+.. .+..++++.+ |.+. .. .....+.+.......+. . ...+....
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITLEEARGPMGLGKWDHIRALLKMPAVAERWRAKFGRLPTEADIEA 81 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccHHHHHHhcCccHHHHHHHHhcCHHHHHHHHHHhCCCCCHHHHHH
Confidence 68999999999999864 3455555554 5433 22 22233333322222111 1 12222333
Q ss_pred HHHHHHHH-HHhcCCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--c-cceeeCC-CCCCCCChHH
Q 023578 127 AYQTIADF-ERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--F-SPALSRE-FRPYKPDPGP 201 (280)
Q Consensus 127 ~~~~~~~~-~~~~~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--f-d~v~~~~-~~~~Kp~~~~ 201 (280)
+...+..+ .+.......++||+.++|+.|+++|++++|+||+....++.+++++|+. | +.+++++ ....||+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~ 161 (253)
T TIGR01422 82 IYEAFEPLQLAKLAEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWM 161 (253)
T ss_pred HHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHH
Confidence 33333332 2333356789999999999999999999999999999999999999987 4 7888876 6688999999
Q ss_pred HHHHHHhcCCC-CCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCC---C-------------------ccccccCCCCC
Q 023578 202 LLHICSTWEVQ-PNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRY---S-------------------ADDFTKSNLQP 258 (280)
Q Consensus 202 ~~~~~~~lgi~-~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~---~-------------------~~~~~~~~~~~ 258 (280)
|..+++++|+. |++|++|||+. +|+++|+++|+.+|+|.++... . ..++. ..++
T Consensus 162 ~~~a~~~l~~~~~~~~l~IGDs~-~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~ 238 (253)
T TIGR01422 162 ALKNAIELGVYDVAACVKVGDTV-PDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLK--AAGA 238 (253)
T ss_pred HHHHHHHcCCCCchheEEECCcH-HHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHH--hcCC
Confidence 99999999995 99999999999 9999999999999999853221 0 11222 4789
Q ss_pred CEEEcCHHHHHHHH
Q 023578 259 DFRVSSLTEVLSIL 272 (280)
Q Consensus 259 d~v~~~~~dl~~~l 272 (280)
+++++++.|+.++|
T Consensus 239 ~~v~~~~~el~~~~ 252 (253)
T TIGR01422 239 HYVIDTLAELPAVI 252 (253)
T ss_pred CEehhcHHHHHHhh
Confidence 99999999998765
No 8
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.97 E-value=2.7e-29 Score=211.06 Aligned_cols=207 Identities=14% Similarity=0.142 Sum_probs=148.3
Q ss_pred CCccEEEEeCCCcccCCCCC-HHHHHHHHh---CCch--HHHHHhcCCChhhHHHHhh-------------cc--ChhHH
Q 023578 66 TRLRGVVFDMDGTLTVPVID-FPAMYRAVL---GEDE--YKRVKAENPTGIDILHHIE-------------SW--SPDLQ 124 (280)
Q Consensus 66 ~~~k~iiFD~DGTL~d~~~~-~~~~~~~~~---g~~~--~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~ 124 (280)
+++|+|+||+||||+|+... +..++++.+ |.+. .......+.......+.+. .. ..+..
T Consensus 2 ~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 81 (267)
T PRK13478 2 MKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITLEEARGPMGLGKWDHIRALLKMPRVAARWQAVFGRLPTEADV 81 (267)
T ss_pred CceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHhcHHHHHHHHHHhCCCCCHHHH
Confidence 35899999999999998643 355666554 5543 2222234433333222211 11 11222
Q ss_pred HHHHHHHHH-HHHhcCCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---ccceeeCC-CCCCCCCh
Q 023578 125 RHAYQTIAD-FERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPALSRE-FRPYKPDP 199 (280)
Q Consensus 125 ~~~~~~~~~-~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---fd~v~~~~-~~~~Kp~~ 199 (280)
......+.. +.+.......++||+.++|+.|+++|++++|+||+....+...++.+++. |+.+++++ .+..||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p 161 (267)
T PRK13478 82 DALYAAFEPLQIAKLADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYP 161 (267)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCCh
Confidence 333333322 22333345689999999999999999999999999999999999887765 47788765 66889999
Q ss_pred HHHHHHHHhcCCC-CCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCC---C-------------------ccccccCCC
Q 023578 200 GPLLHICSTWEVQ-PNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRY---S-------------------ADDFTKSNL 256 (280)
Q Consensus 200 ~~~~~~~~~lgi~-~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~---~-------------------~~~~~~~~~ 256 (280)
++|..+++++|+. +++|+||||+. +|+++|+++|+.+|+|.+++.. + ...+. ..
T Consensus 162 ~~~~~a~~~l~~~~~~e~l~IGDs~-~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~ 238 (267)
T PRK13478 162 WMALKNAIELGVYDVAACVKVDDTV-PGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLR--AA 238 (267)
T ss_pred HHHHHHHHHcCCCCCcceEEEcCcH-HHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHH--Hc
Confidence 9999999999996 69999999999 9999999999999999863321 0 01222 46
Q ss_pred CCCEEEcCHHHHHHHHHhc
Q 023578 257 QPDFRVSSLTEVLSILEAN 275 (280)
Q Consensus 257 ~~d~v~~~~~dl~~~l~~~ 275 (280)
+++++++++.|+.++++.+
T Consensus 239 ~a~~vi~~~~~l~~~l~~~ 257 (267)
T PRK13478 239 GAHYVIDTIADLPAVIADI 257 (267)
T ss_pred CCCeehhhHHHHHHHHHHH
Confidence 8999999999999988654
No 9
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.97 E-value=6e-29 Score=206.86 Aligned_cols=200 Identities=16% Similarity=0.193 Sum_probs=151.6
Q ss_pred CCccEEEEeCCCcccCCCC-CHHHHHHHHh---CCch--HHHH-HhcCCChhhHHHHhhcc--ChhHHHHHHHHHHHHHH
Q 023578 66 TRLRGVVFDMDGTLTVPVI-DFPAMYRAVL---GEDE--YKRV-KAENPTGIDILHHIESW--SPDLQRHAYQTIADFER 136 (280)
Q Consensus 66 ~~~k~iiFD~DGTL~d~~~-~~~~~~~~~~---g~~~--~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 136 (280)
..+|+|+|||||||+||.. .+..+|.+++ |.+. .... ...|.+.......+..+ .......+......++.
T Consensus 22 ~~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 101 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEGMKNEQAISEVLCWSRDFLQMKRLAIRKEDLYE 101 (260)
T ss_pred CCceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3489999999999999964 4445666554 6553 2233 34566666666555432 22223333333333322
Q ss_pred hc-CCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCC
Q 023578 137 QG-LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQ 212 (280)
Q Consensus 137 ~~-~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~ 212 (280)
.. .....++||+.++|+.|+++|++++|+||+....++..++++|+. |+.+++++ ...+||+|++|..+++++|++
T Consensus 102 ~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~~ 181 (260)
T PLN03243 102 YMQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGFI 181 (260)
T ss_pred HHHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCCC
Confidence 21 234678999999999999999999999999999999999999998 99998876 668999999999999999999
Q ss_pred CCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHH
Q 023578 213 PNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSIL 272 (280)
Q Consensus 213 ~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l 272 (280)
|++|++|||+. .|+++|+++|+.+|++.. .+..... ..+++++.++.|+....
T Consensus 182 p~~~l~IgDs~-~Di~aA~~aG~~~i~v~g--~~~~~~l----~~ad~vi~~~~el~~~~ 234 (260)
T PLN03243 182 PERCIVFGNSN-SSVEAAHDGCMKCVAVAG--KHPVYEL----SAGDLVVRRLDDLSVVD 234 (260)
T ss_pred hHHeEEEcCCH-HHHHHHHHcCCEEEEEec--CCchhhh----ccCCEEeCCHHHHHHHH
Confidence 99999999999 999999999999999963 2222221 36899999999987764
No 10
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=7.3e-29 Score=208.35 Aligned_cols=208 Identities=23% Similarity=0.292 Sum_probs=156.7
Q ss_pred CCCCCccEEEEeCCCcccCCCCCHHHHHHHHh---CCch--HHHH-HhcCCChhhHHHHhh-------ccChhHHHHHHH
Q 023578 63 KPKTRLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRV-KAENPTGIDILHHIE-------SWSPDLQRHAYQ 129 (280)
Q Consensus 63 ~~~~~~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~--~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 129 (280)
.+.+.+|+|+|||||||+|+...+..++..++ |.+. .... ...+.........+. ..++...+....
T Consensus 8 ~~~~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 87 (272)
T PRK13223 8 FPGRLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALA 87 (272)
T ss_pred CCCccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhChhHHHHHHHHhcccccccCCCHHHHHHHHH
Confidence 34456899999999999999998887777765 5443 2222 223433333333321 123333444444
Q ss_pred HHHHHHHhcCCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHH
Q 023578 130 TIADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHIC 206 (280)
Q Consensus 130 ~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~ 206 (280)
.+.+.+........++||+.++|+.|+++|++++++||+....++..++.+|+. |+.+++++ .+..||+|++++.++
T Consensus 88 ~~~~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~ 167 (272)
T PRK13223 88 LFMEAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVM 167 (272)
T ss_pred HHHHHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHH
Confidence 444444433345678999999999999999999999999999999999999987 88888876 667899999999999
Q ss_pred HhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHh
Q 023578 207 STWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEA 274 (280)
Q Consensus 207 ~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~ 274 (280)
+++|++|++|++|||+. +|+++|+++|+.+++|..+.. ...+.. ...++++++++.+|.+++..
T Consensus 168 ~~~g~~~~~~l~IGD~~-~Di~aA~~aGi~~i~v~~G~~-~~~~l~--~~~~~~vi~~l~el~~~~~~ 231 (272)
T PRK13223 168 KMAGVPPSQSLFVGDSR-SDVLAAKAAGVQCVALSYGYN-HGRPIA--EESPALVIDDLRALLPGCAD 231 (272)
T ss_pred HHhCCChhHEEEECCCH-HHHHHHHHCCCeEEEEecCCC-Cchhhh--hcCCCEEECCHHHHHHHHhc
Confidence 99999999999999999 999999999999999975222 121222 25899999999999987654
No 11
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=4.2e-29 Score=209.06 Aligned_cols=204 Identities=23% Similarity=0.312 Sum_probs=155.3
Q ss_pred CCccEEEEeCCCcccCCCCCHHHHHHHHh---CCch--HHHHH-hcCCChhhHHHHhhccChhHHHHHHHHHHHHHHhcC
Q 023578 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVK-AENPTGIDILHHIESWSPDLQRHAYQTIADFERQGL 139 (280)
Q Consensus 66 ~~~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (280)
+.+|+++|||||||+||...+..++++++ |.+. ...+. ..+.......+.+ .......++....+.++.....
T Consensus 60 ~~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~ 138 (273)
T PRK13225 60 QTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTIVRRA-GLSPWQQARLLQRVQRQLGDCL 138 (273)
T ss_pred hhcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHc-CCCHHHHHHHHHHHHHHHHhhc
Confidence 35899999999999999987777777765 5432 22222 2333444443332 2333334444444444445555
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEE
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVM 217 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v 217 (280)
....++||+.++|+.|+++|++++|+||+....++..++.+|+. |+.+++++... ++++.+..+++++|++|++|+
T Consensus 139 ~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~~~~~~--~k~~~~~~~l~~~~~~p~~~l 216 (273)
T PRK13225 139 PALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQAGTPIL--SKRRALSQLVAREGWQPAAVM 216 (273)
T ss_pred ccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEecCCCC--CCHHHHHHHHHHhCcChhHEE
Confidence 67789999999999999999999999999999999999999998 88887766443 456899999999999999999
Q ss_pred EEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhcc
Q 023578 218 MVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANF 276 (280)
Q Consensus 218 ~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~ 276 (280)
+|||+. +|+++|+++|+.+|++.++.. ...++. ...++++++++.||++++.+++
T Consensus 217 ~IGDs~-~Di~aA~~AG~~~I~v~~g~~-~~~~l~--~~~ad~~i~~~~eL~~~~~~~~ 271 (273)
T PRK13225 217 YVGDET-RDVEAARQVGLIAVAVTWGFN-DRQSLV--AACPDWLLETPSDLLQAVTQLM 271 (273)
T ss_pred EECCCH-HHHHHHHHCCCeEEEEecCCC-CHHHHH--HCCCCEEECCHHHHHHHHHHHh
Confidence 999999 999999999999999985221 111222 3589999999999999987764
No 12
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.97 E-value=5.2e-29 Score=202.68 Aligned_cols=198 Identities=26% Similarity=0.358 Sum_probs=148.6
Q ss_pred EEEeCCCcccCCCCCHHHHHHHHh---CCch--HHHH-HhcCCChhhHHHHhhc-----cChhHHHHHHHHHHHHH-Hhc
Q 023578 71 VVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRV-KAENPTGIDILHHIES-----WSPDLQRHAYQTIADFE-RQG 138 (280)
Q Consensus 71 iiFD~DGTL~d~~~~~~~~~~~~~---g~~~--~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~ 138 (280)
|+||+||||+|+...+..++++.+ |.+. ...+ ...+.........+.. ...+..+.....+..++ ...
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPATLARVIGFIGNGVPVLMERVLAWAGQEPDAQRVAELRKLFDRHYEEVA 80 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhcccHHHHHHHHhhccccccChHHHHHHHHHHHHHHHHhc
Confidence 689999999999887777777665 5542 2222 2244444444443321 12222333333333333 333
Q ss_pred CCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCc
Q 023578 139 LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNE 215 (280)
Q Consensus 139 ~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~ 215 (280)
.....++||+.++|+.|+++|++++|+||+....++..++++|+. |+.+++++ .+..||+|+.|..+++++|++|++
T Consensus 81 ~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 160 (213)
T TIGR01449 81 GELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQQ 160 (213)
T ss_pred cccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChhH
Confidence 345789999999999999999999999999999999999999997 88888866 668899999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHH
Q 023578 216 VMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSIL 272 (280)
Q Consensus 216 ~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l 272 (280)
|++|||+. +|+++|+++|+.++++.++... ..... ...++++++++.|+..+|
T Consensus 161 ~~~igDs~-~d~~aa~~aG~~~i~v~~g~~~-~~~l~--~~~a~~~i~~~~~l~~~~ 213 (213)
T TIGR01449 161 MVYVGDSR-VDIQAARAAGCPSVLLTYGYRY-GEAID--LLPPDVLYDSLNELPPLL 213 (213)
T ss_pred eEEeCCCH-HHHHHHHHCCCeEEEEccCCCC-Ccchh--hcCCCeEeCCHHHHHhhC
Confidence 99999999 9999999999999999753221 12222 358999999999988753
No 13
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.97 E-value=6.5e-29 Score=203.36 Aligned_cols=199 Identities=18% Similarity=0.244 Sum_probs=148.9
Q ss_pred CccEEEEeCCCcccCCCCCHHHHHHHHh---CCchH--HHH-HhcCCChhhHHHHhh---ccChhHHHHHH-HHHHHHHH
Q 023578 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDEY--KRV-KAENPTGIDILHHIE---SWSPDLQRHAY-QTIADFER 136 (280)
Q Consensus 67 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~~--~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~ 136 (280)
++|+|+||+||||+|+...+..++.+++ |.+.. ... ...+.........+. .+......... ...+.+.+
T Consensus 6 ~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPSRQEVVQRIIARVIS 85 (222)
T ss_pred cCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHhhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999988887777655 54431 222 223433333333221 12111122222 22222333
Q ss_pred hcCCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCC
Q 023578 137 QGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQP 213 (280)
Q Consensus 137 ~~~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~ 213 (280)
.......++||+.++|+.|+++|++++|+||+....++..++.+|+. |+.+++++ .+.+||+|++++.+++++|++|
T Consensus 86 ~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 165 (222)
T PRK10826 86 LIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGVDP 165 (222)
T ss_pred HHhcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCCCH
Confidence 33456789999999999999999999999999999999999999998 89888865 6789999999999999999999
Q ss_pred CcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHH
Q 023578 214 NEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLS 270 (280)
Q Consensus 214 ~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~ 270 (280)
++|++|||+. +|+++|+++|+.+|++.++.... +.. ...+++++.++.|+..
T Consensus 166 ~~~~~igDs~-~Di~aA~~aG~~~i~v~~~~~~~--~~~--~~~~~~~~~~~~dl~~ 217 (222)
T PRK10826 166 LTCVALEDSF-NGMIAAKAARMRSIVVPAPEQQN--DPR--WALADVKLESLTELTA 217 (222)
T ss_pred HHeEEEcCCh-hhHHHHHHcCCEEEEecCCccCc--hhh--hhhhheeccCHHHHhh
Confidence 9999999999 99999999999999998643221 111 2468999999999865
No 14
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.96 E-value=4.8e-28 Score=198.75 Aligned_cols=205 Identities=23% Similarity=0.354 Sum_probs=155.9
Q ss_pred CCccEEEEeCCCcccCCCCCHHHHHHHHh---CCch--HHHHH-hcCCChhhHHHHhhc-----cChhHHHHHHHHHHHH
Q 023578 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVK-AENPTGIDILHHIES-----WSPDLQRHAYQTIADF 134 (280)
Q Consensus 66 ~~~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~--~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 134 (280)
+++++|+||+||||+|+...+..++...+ |.+. ...+. ..+............ ...+..+.....+..+
T Consensus 4 ~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRTWVGNGADVLVERALTWAGREPDEELLEKLRELFDRH 83 (226)
T ss_pred CcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHHHhhccCCccHHHHHHHHHHHHHH
Confidence 45899999999999999876666666554 5442 22232 234444444444322 2334444444444443
Q ss_pred HHh-cCCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcC
Q 023578 135 ERQ-GLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWE 210 (280)
Q Consensus 135 ~~~-~~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lg 210 (280)
+.. ......++||+.++++.|+++|++++++||+....++..++.+|+. |+.+++++ ....||+|++++.++++++
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~ 163 (226)
T PRK13222 84 YAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLG 163 (226)
T ss_pred HHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcC
Confidence 333 3335789999999999999999999999999999999999999987 88888865 6688999999999999999
Q ss_pred CCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHh
Q 023578 211 VQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEA 274 (280)
Q Consensus 211 i~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~ 274 (280)
+++++|++|||+. +|+++|+++|+.+|++.++..... +.. ...+++++.++.||..++.+
T Consensus 164 ~~~~~~i~igD~~-~Di~~a~~~g~~~i~v~~g~~~~~-~~~--~~~~~~~i~~~~~l~~~l~~ 223 (226)
T PRK13222 164 LDPEEMLFVGDSR-NDIQAARAAGCPSVGVTYGYNYGE-PIA--LSEPDVVIDHFAELLPLLGL 223 (226)
T ss_pred CChhheEEECCCH-HHHHHHHHCCCcEEEECcCCCCcc-chh--hcCCCEEECCHHHHHHHHHH
Confidence 9999999999999 999999999999999985332222 222 35899999999999998864
No 15
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.96 E-value=3.6e-28 Score=209.11 Aligned_cols=204 Identities=16% Similarity=0.211 Sum_probs=155.7
Q ss_pred CccEEEEeCCCcccCCCC-CHHHHHHHHh---CCch--HHHH-HhcCCChhhHHHHhhcc--ChhHHHHHHHHHHHHHH-
Q 023578 67 RLRGVVFDMDGTLTVPVI-DFPAMYRAVL---GEDE--YKRV-KAENPTGIDILHHIESW--SPDLQRHAYQTIADFER- 136 (280)
Q Consensus 67 ~~k~iiFD~DGTL~d~~~-~~~~~~~~~~---g~~~--~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~- 136 (280)
..++|||||||||+|+.. .+..+|.+++ |.+. .... ...|.+..+....+..+ .....+.+...+.+++.
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G~~~~~~l~~ll~~~~~~~~~e~l~~~~~~~y~~ 209 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGMKNEQAISEVLCWSRDPAELRRMATRKEEIYQA 209 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 589999999999999887 3444666554 6554 2222 34566666666655432 23334444444444333
Q ss_pred hcCCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCC
Q 023578 137 QGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQP 213 (280)
Q Consensus 137 ~~~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~ 213 (280)
.......++||+.++|+.|+++|++++|+||+....++..++++|+. |+.+++++ ....||+|++|..+++++|++|
T Consensus 210 ~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl~P 289 (381)
T PLN02575 210 LQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNFIP 289 (381)
T ss_pred HhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCCCc
Confidence 23345678999999999999999999999999999999999999998 99999876 6678999999999999999999
Q ss_pred CcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHH-HHHHHhccC
Q 023578 214 NEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEV-LSILEANFD 277 (280)
Q Consensus 214 ~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl-~~~l~~~~~ 277 (280)
++|++|||+. .|+++|+++|+.+|++.+. +...+ ...++++++++.|| ...++.+++
T Consensus 290 eecl~IGDS~-~DIeAAk~AGm~~IgV~~~--~~~~~----l~~Ad~iI~s~~EL~~~~l~~l~~ 347 (381)
T PLN02575 290 ERCIVFGNSN-QTVEAAHDARMKCVAVASK--HPIYE----LGAADLVVRRLDELSIVDLKNLAD 347 (381)
T ss_pred ccEEEEcCCH-HHHHHHHHcCCEEEEECCC--CChhH----hcCCCEEECCHHHHHHHHHhhhhh
Confidence 9999999999 9999999999999999742 21111 13699999999998 334454443
No 16
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.96 E-value=2e-28 Score=199.48 Aligned_cols=205 Identities=20% Similarity=0.241 Sum_probs=152.2
Q ss_pred ccEEEEeCCCcccCCCCCHHHHHHHHh---CCch-H-HHHHhcCCChhhHHHHhhccCh----hHHHHHHHHHHHHHHhc
Q 023578 68 LRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE-Y-KRVKAENPTGIDILHHIESWSP----DLQRHAYQTIADFERQG 138 (280)
Q Consensus 68 ~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~-~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 138 (280)
+|++||||||||+||...+.++|.+++ |... . ......+.........+..... .................
T Consensus 2 ~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (221)
T COG0637 2 IKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEALE 81 (221)
T ss_pred CcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHhh
Confidence 699999999999999998888888877 5443 2 2223334333333333322111 11112222222333444
Q ss_pred CCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCc
Q 023578 139 LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNE 215 (280)
Q Consensus 139 ~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~ 215 (280)
.....+.||+.++|+.|+++|++++++|++.+..++..++.+|+. |+.+++++ +..+||+|+.|..+++++|++|++
T Consensus 82 ~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~ 161 (221)
T COG0637 82 LEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEE 161 (221)
T ss_pred hcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCChHH
Confidence 567889999999999999999999999999999999999999988 99887754 778899999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHh
Q 023578 216 VMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEA 274 (280)
Q Consensus 216 ~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~ 274 (280)
|++|+|+. +++++|+++||.+|++....... .........++.+..++.++...+.+
T Consensus 162 CvviEDs~-~Gi~Aa~aAGm~vv~v~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (221)
T COG0637 162 CVVVEDSP-AGIQAAKAAGMRVVGVPAGHDRP-HLDPLDAHGADTVLLDLAELPALLEA 218 (221)
T ss_pred eEEEecch-hHHHHHHHCCCEEEEecCCCCcc-ccchhhhhhcchhhccHHHHHHHHHh
Confidence 99999999 99999999999999998622221 01111135777788888888877654
No 17
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.96 E-value=4.3e-28 Score=196.08 Aligned_cols=194 Identities=18% Similarity=0.313 Sum_probs=145.2
Q ss_pred EEEeCCCcccCCCCCHHHHHHHHh----CCch--HHHHH-hcCCChhhHHHHhhccChhHHHHHHHHHHHHHHhcCCCcc
Q 023578 71 VVFDMDGTLTVPVIDFPAMYRAVL----GEDE--YKRVK-AENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQ 143 (280)
Q Consensus 71 iiFD~DGTL~d~~~~~~~~~~~~~----g~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (280)
|+|||||||+|+...+.+++++++ |.+. ...++ ..+.......+.+ ......... ....++ .......
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~---~~~~~~-~~~~~~~ 75 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAPFEEYRRHLGRYFPDIMRIM-GLPLEMEEP---FVRESY-RLAGEVE 75 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhCccHHHHHHHc-CCCHHHHHH---HHHHHH-Hhhcccc
Confidence 689999999999998888877664 3322 22222 2343333333332 111111111 111222 2235678
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCcEEEEc
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~v~iG 220 (280)
++||+.++|++|+++|++++|+||+....++..++.+|+. |+.+++++ .+.+||+|+.|+.+++++|++|++|++||
T Consensus 76 ~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~ig 155 (205)
T TIGR01454 76 VFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVMVG 155 (205)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheEEEc
Confidence 9999999999999999999999999999999999999997 88888865 66889999999999999999999999999
Q ss_pred CCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHH
Q 023578 221 DSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILE 273 (280)
Q Consensus 221 Ds~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~ 273 (280)
|+. +|+++|+++|+.++++.++.... .++. +.++++++.++.+|..++.
T Consensus 156 D~~-~Di~aA~~~Gi~~i~~~~g~~~~-~~l~--~~~~~~~~~~~~~l~~~~~ 204 (205)
T TIGR01454 156 DAV-TDLASARAAGTATVAALWGEGDA-GELL--AARPDFLLRKPQSLLALCR 204 (205)
T ss_pred CCH-HHHHHHHHcCCeEEEEEecCCCh-hhhh--hcCCCeeeCCHHHHHHHhh
Confidence 999 99999999999999998532211 1222 3689999999999988764
No 18
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.96 E-value=9.5e-28 Score=196.36 Aligned_cols=196 Identities=21% Similarity=0.299 Sum_probs=138.0
Q ss_pred ccEEEEeCCCcccCCCCCHHHHHHHHh------CCch-HHHHH--------hcCCC----hhhHHHHhh-ccChhHHHHH
Q 023578 68 LRGVVFDMDGTLTVPVIDFPAMYRAVL------GEDE-YKRVK--------AENPT----GIDILHHIE-SWSPDLQRHA 127 (280)
Q Consensus 68 ~k~iiFD~DGTL~d~~~~~~~~~~~~~------g~~~-~~~~~--------~~~~~----~~~~~~~~~-~~~~~~~~~~ 127 (280)
+++|+||+||||+|+...+..+++.+. |.+. ..... ..+.. .......+. .... +..
T Consensus 2 ~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 78 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLNVDFEEAYEELLKLIKEYGSNYPTHFDYLIRRLWEEYNP---KLV 78 (221)
T ss_pred ceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHhccccCcchHHHHHHHhhhcCH---HHH
Confidence 689999999999999987766655431 3322 11110 01110 000111110 0011 111
Q ss_pred HHHHHHHHHhcCCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHH
Q 023578 128 YQTIADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLH 204 (280)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~ 204 (280)
.+....+.........++||+.++|+.|+++|++++++||+....++..++++|+. |+.+++++ .+..||+|++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~ 158 (221)
T TIGR02253 79 AAFVYAYHKLKFAYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYA 158 (221)
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHH
Confidence 12222222222345689999999999999999999999999988899999999998 89888765 7789999999999
Q ss_pred HHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHH
Q 023578 205 ICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEV 268 (280)
Q Consensus 205 ~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl 268 (280)
+++++|++|+++++|||+..+|+.+|+++|+.+|++.++.... .+.. ....+++++.++.|+
T Consensus 159 ~~~~~~~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~-~~~~-~~~~~~~~i~~~~el 220 (221)
T TIGR02253 159 ALKRLGVKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKSSK-MEDD-VYPYPDYEISSLREL 220 (221)
T ss_pred HHHHcCCChhhEEEECCChHHHHHHHHHCCCEEEEECCCCCcc-cccc-cccCCCeeeCcHHhh
Confidence 9999999999999999997479999999999999998633221 1111 135789999999886
No 19
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.96 E-value=1.3e-27 Score=195.27 Aligned_cols=129 Identities=15% Similarity=0.124 Sum_probs=109.7
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCcE
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEV 216 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~ 216 (280)
....++||+.++|+.|+++|++++++||+....++..++.+|+. |+.+++++ .+..||+|++|..+++++|++|++|
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~ 169 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERT 169 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHE
Confidence 55789999999999999999999999999999999999999987 89988865 7789999999999999999999999
Q ss_pred EEEcCCchhhHHHHHHcCCcE-EEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhcc
Q 023578 217 MMVGDSLKDDVACGKRAGAFT-CLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANF 276 (280)
Q Consensus 217 v~iGDs~~~Di~~a~~~G~~~-i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~ 276 (280)
+||||+. .|+++|+++||.+ ++|.++.. ... ..+..+..++.++.+++..+.
T Consensus 170 l~igDs~-~di~aA~~aG~~~~~~v~~~~~----~~~---~~~~~~~~~~~~~~~~~~~l~ 222 (224)
T PRK14988 170 LFIDDSE-PILDAAAQFGIRYCLGVTNPDS----GIA---EKQYQRHPSLNDYRRLIPSLM 222 (224)
T ss_pred EEEcCCH-HHHHHHHHcCCeEEEEEeCCCC----Ccc---chhccCCCcHHHHHHHhhhhc
Confidence 9999999 9999999999974 66764211 111 245555678888888877664
No 20
>PRK09449 dUMP phosphatase; Provisional
Probab=99.96 E-value=5.4e-27 Score=192.27 Aligned_cols=130 Identities=28% Similarity=0.397 Sum_probs=110.5
Q ss_pred cCCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCC-C
Q 023578 138 GLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQ-P 213 (280)
Q Consensus 138 ~~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~-~ 213 (280)
+.....++||+.++|+.|+ +|++++++||+....++..++.+|+. |+.+++++ .+..||+|++|..+++++|+. +
T Consensus 90 ~~~~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~ 168 (224)
T PRK09449 90 MAEICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQMGNPDR 168 (224)
T ss_pred HhhcCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHcCCCCc
Confidence 3344679999999999999 57999999999999999999999998 99988865 778999999999999999985 5
Q ss_pred CcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHH
Q 023578 214 NEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILE 273 (280)
Q Consensus 214 ~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~ 273 (280)
++|++|||+..+|+++|+++|+.+|++++. +..... ...+++++.++.||.++++
T Consensus 169 ~~~~~vgD~~~~Di~~A~~aG~~~i~~~~~---~~~~~~--~~~~~~~i~~~~el~~~l~ 223 (224)
T PRK09449 169 SRVLMVGDNLHSDILGGINAGIDTCWLNAH---GREQPE--GIAPTYQVSSLSELEQLLC 223 (224)
T ss_pred ccEEEEcCCcHHHHHHHHHCCCcEEEECCC---CCCCCC--CCCCeEEECCHHHHHHHHh
Confidence 799999999724999999999999999742 221111 2468999999999998875
No 21
>PLN02940 riboflavin kinase
Probab=99.95 E-value=3.7e-27 Score=206.44 Aligned_cols=199 Identities=20% Similarity=0.267 Sum_probs=149.7
Q ss_pred CCccEEEEeCCCcccCCCCCHHHHHHHHh---CCch--HHHHHhcCCChhhHHHHhhc-cC-hhHHHHHHHHHHHHHHhc
Q 023578 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVKAENPTGIDILHHIES-WS-PDLQRHAYQTIADFERQG 138 (280)
Q Consensus 66 ~~~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~--~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 138 (280)
..+|+|+||+||||+|+...+..++..++ |.+. .......+....+....+.. .. ....+++...+..+....
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVGKTPLEAAATVVEDYGLPCSTDEFNSEITPLLSEQ 88 (382)
T ss_pred ccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 34899999999999999998888877765 5433 22223345444444433321 11 112233333333333333
Q ss_pred CCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHH-HcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCCC
Q 023578 139 LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHN-RFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPN 214 (280)
Q Consensus 139 ~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~-~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~ 214 (280)
.....++||+.++|+.|+++|++++|+||+....++..++ .+|+. |+.+++++ ....||+|++|..+++++|++|+
T Consensus 89 ~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~ 168 (382)
T PLN02940 89 WCNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPS 168 (382)
T ss_pred HccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCChh
Confidence 3567899999999999999999999999999998888886 68887 99999876 67899999999999999999999
Q ss_pred cEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHH
Q 023578 215 EVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLS 270 (280)
Q Consensus 215 ~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~ 270 (280)
+|++|||+. .|+++|+++|+.+|++.++. .... . ...+++++.++.|+..
T Consensus 169 ~~l~VGDs~-~Di~aA~~aGi~~I~v~~g~--~~~~--~-~~~ad~~i~sl~el~~ 218 (382)
T PLN02940 169 NCLVIEDSL-PGVMAGKAAGMEVIAVPSIP--KQTH--L-YSSADEVINSLLDLQP 218 (382)
T ss_pred HEEEEeCCH-HHHHHHHHcCCEEEEECCCC--cchh--h-ccCccEEeCCHhHcCH
Confidence 999999999 99999999999999998521 1111 1 3589999999999754
No 22
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.95 E-value=1.4e-26 Score=189.81 Aligned_cols=199 Identities=22% Similarity=0.277 Sum_probs=140.2
Q ss_pred ccEEEEeCCCcccCCCCCHHHHHHHHh---CCchH-HHHHhcCCChhhHHHHhh--ccChhH-----HHHHH--------
Q 023578 68 LRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDEY-KRVKAENPTGIDILHHIE--SWSPDL-----QRHAY-------- 128 (280)
Q Consensus 68 ~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~-------- 128 (280)
+|+|+||+||||+|+...+..++.+++ |.+.. ................+. ...... .....
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDMFAQYKEINQGLWRAYEEGKITKDEVVNTRFSALLKEYNTEAD 80 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccHHHHHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCc
Confidence 589999999999999997776666654 54421 111000000001111110 000000 00000
Q ss_pred --HHHHHHHHhcCCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHH
Q 023578 129 --QTIADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLL 203 (280)
Q Consensus 129 --~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~ 203 (280)
.....+.+.......++||+.++|++|+++ ++++++||+....++..++.+|+. |+.+++++ .+..||+|++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~ 159 (224)
T TIGR02254 81 EALLNQKYLRFLEEGHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFN 159 (224)
T ss_pred HHHHHHHHHHHHhccCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHH
Confidence 111122222223467999999999999999 999999999999999999999998 99998865 788999999999
Q ss_pred HHHHhc-CCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHH
Q 023578 204 HICSTW-EVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSIL 272 (280)
Q Consensus 204 ~~~~~l-gi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l 272 (280)
.+++++ |++|++++||||+..+|+++|+++|+.+|++++++. . ... ...++++++++.||.++|
T Consensus 160 ~~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~-~--~~~--~~~~~~~~~~~~el~~~~ 224 (224)
T TIGR02254 160 YALERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMH-P--NPD--DIIPTYEIRSLEELYEIL 224 (224)
T ss_pred HHHHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCCCC-C--CCC--CCCCceEECCHHHHHhhC
Confidence 999999 999999999999973599999999999999985322 1 111 357899999999998764
No 23
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.95 E-value=1.5e-26 Score=191.09 Aligned_cols=126 Identities=24% Similarity=0.290 Sum_probs=103.7
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCcE
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEV 216 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~ 216 (280)
....++||+.++|+.|+++ ++++++||+... ++.+|+. |+.+++++ .+..||+|++|..+++++|++|++|
T Consensus 110 ~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~ 183 (238)
T PRK10748 110 SRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEI 183 (238)
T ss_pred hcCCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCChhHE
Confidence 4568999999999999976 999999998764 3678887 89988765 7789999999999999999999999
Q ss_pred EEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHH
Q 023578 217 MMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSIL 272 (280)
Q Consensus 217 v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l 272 (280)
+||||+...|+.+|+++|+.+|++++.+..-... ......+++++.++.||.++|
T Consensus 184 ~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~-~~~~~~p~~~i~~l~el~~~~ 238 (238)
T PRK10748 184 LHVGDDLTTDVAGAIRCGMQACWINPENGDLMQT-WDSRLLPHIEISRLASLTSLI 238 (238)
T ss_pred EEEcCCcHHHHHHHHHCCCeEEEEcCCCcccccc-ccccCCCCEEECCHHHHHhhC
Confidence 9999993299999999999999998643211111 111247999999999998864
No 24
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.95 E-value=2e-26 Score=188.47 Aligned_cols=199 Identities=17% Similarity=0.225 Sum_probs=144.0
Q ss_pred CccEEEEeCCCcccCCCCCHHHHHHHHh---CCch-HH-HHHh-cCCChhhHHHHhhc-cC-hhHHHHHHHHHHH-HHHh
Q 023578 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE-YK-RVKA-ENPTGIDILHHIES-WS-PDLQRHAYQTIAD-FERQ 137 (280)
Q Consensus 67 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~-~~-~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~-~~~~ 137 (280)
++|+|+||+||||+|+...+.+++.+.+ |.+. .. .... .+.........+.. .. ....+.+...+.. +...
T Consensus 3 ~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (221)
T PRK10563 3 QIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFKGVKLYEIIDIISKEHGVTLAKAELEPVYRAEVARL 82 (221)
T ss_pred CCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 4899999999999999887777776665 5543 22 2222 33344444444322 11 1112223222222 2222
Q ss_pred cCCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--cc-ceeeC-CCCCCCCChHHHHHHHHhcCCCC
Q 023578 138 GLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FS-PALSR-EFRPYKPDPGPLLHICSTWEVQP 213 (280)
Q Consensus 138 ~~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd-~v~~~-~~~~~Kp~~~~~~~~~~~lgi~~ 213 (280)
......++||+.++|+.|+ ++++|+||+....++..++++|+. |+ .++++ +.+..||+|+.|..+++++|++|
T Consensus 83 ~~~~~~~~~gv~~~L~~L~---~~~~ivTn~~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p 159 (221)
T PRK10563 83 FDSELEPIAGANALLESIT---VPMCVVSNGPVSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNV 159 (221)
T ss_pred HHccCCcCCCHHHHHHHcC---CCEEEEeCCcHHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCH
Confidence 2345789999999999993 899999999999999999999998 75 56776 47889999999999999999999
Q ss_pred CcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHh
Q 023578 214 NEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEA 274 (280)
Q Consensus 214 ~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~ 274 (280)
++|++|||+. .|+++|+++|+.+|++...+ .. ... ...++.++.++.||.+++..
T Consensus 160 ~~~l~igDs~-~di~aA~~aG~~~i~~~~~~-~~-~~~---~~~~~~~~~~~~~l~~~~~~ 214 (221)
T PRK10563 160 ENCILVDDSS-AGAQSGIAAGMEVFYFCADP-HN-KPI---DHPLVTTFTDLAQLPELWKA 214 (221)
T ss_pred HHeEEEeCcH-hhHHHHHHCCCEEEEECCCC-CC-cch---hhhhhHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999999986321 11 111 23566778999998887764
No 25
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.95 E-value=4.1e-26 Score=192.83 Aligned_cols=197 Identities=17% Similarity=0.208 Sum_probs=138.8
Q ss_pred CccEEEEeCCCcccCCC-CCHHHHHHHHh---CCch----HH---HHHhcCCChhhHHHHhh--ccC----------hhH
Q 023578 67 RLRGVVFDMDGTLTVPV-IDFPAMYRAVL---GEDE----YK---RVKAENPTGIDILHHIE--SWS----------PDL 123 (280)
Q Consensus 67 ~~k~iiFD~DGTL~d~~-~~~~~~~~~~~---g~~~----~~---~~~~~~~~~~~~~~~~~--~~~----------~~~ 123 (280)
.+++|+|||||||+|+. ..+..++++++ |.+. .. .+...+.+.......+. .+. ++.
T Consensus 39 ~~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 118 (286)
T PLN02779 39 LPEALLFDCDGVLVETERDGHRVAFNDAFKEFGLRPVEWDVELYDELLNIGGGKERMTWYFNENGWPTSTIEKAPKDEEE 118 (286)
T ss_pred CCcEEEEeCceeEEccccHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHccCCChHHHHHHHHHcCCCccccccCCccchh
Confidence 47999999999999999 77777777665 6621 11 12223433333333221 111 111
Q ss_pred HHH----HHHHHHHHHHhcC-C-CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCC-c----ccceeeCC-
Q 023578 124 QRH----AYQTIADFERQGL-D-RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI-T----FSPALSRE- 191 (280)
Q Consensus 124 ~~~----~~~~~~~~~~~~~-~-~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~-~----fd~v~~~~- 191 (280)
.+. +......++.... . .+.++||+.++|+.|+++|++++|+||+....+..+++.++. . |+.+ +++
T Consensus 119 ~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~~~~~~~~~v-~~~~ 197 (286)
T PLN02779 119 RKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVF-AGDD 197 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccccccCceEEE-eccc
Confidence 111 2222222222221 2 257999999999999999999999999999999888887642 2 3444 444
Q ss_pred CCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHH
Q 023578 192 FRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLS 270 (280)
Q Consensus 192 ~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~ 270 (280)
.+..||+|++|..+++++|++|++|++|||+. +|+++|+++|+.+|++.++ +...+.. ..++++++++.++..
T Consensus 198 ~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs~-~Di~aA~~aG~~~i~v~~g--~~~~~~l---~~ad~vi~~~~~l~~ 270 (286)
T PLN02779 198 VPKKKPDPDIYNLAAETLGVDPSRCVVVEDSV-IGLQAAKAAGMRCIVTKSS--YTADEDF---SGADAVFDCLGDVPL 270 (286)
T ss_pred cCCCCCCHHHHHHHHHHhCcChHHEEEEeCCH-HhHHHHHHcCCEEEEEccC--Ccccccc---CCCcEEECChhhcch
Confidence 67889999999999999999999999999999 9999999999999999753 2222111 479999999998754
No 26
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.95 E-value=4e-26 Score=205.45 Aligned_cols=204 Identities=15% Similarity=0.185 Sum_probs=150.2
Q ss_pred CccEEEEeCCCcccCCCCCHHHHHHHHhCCc----------hHHHH-HhcCCChhhHHHHhhc-cChhHHHHHHHHHHHH
Q 023578 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVLGED----------EYKRV-KAENPTGIDILHHIES-WSPDLQRHAYQTIADF 134 (280)
Q Consensus 67 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~g~~----------~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 134 (280)
++++|+|||||||+|+...+..+|++.+... ....+ +..|....+.+..+.. ......+.....+.++
T Consensus 240 m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 319 (459)
T PRK06698 240 MLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDKYREIMGVPLPKVWEALLPDHSLEIREQTDAYFLER 319 (459)
T ss_pred hhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHcCCChHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 4799999999999999998887777765111 11222 2345555555444422 1111112222222222
Q ss_pred H-Hhc-CCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCCCCCCCCChHHHHHHHHhcC
Q 023578 135 E-RQG-LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWE 210 (280)
Q Consensus 135 ~-~~~-~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~~~~~Kp~~~~~~~~~~~lg 210 (280)
+ +.. .....++||+.++|+.|+++|++++|+||+....++..++.+|+. |+.+++++....||+|+.+..++++++
T Consensus 320 ~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~l~ 399 (459)
T PRK06698 320 LIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQINSLNKSDLVKSILNKYD 399 (459)
T ss_pred hHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEecCCCCCCCCcHHHHHHHHhcC
Confidence 2 211 234688999999999999999999999999999999999999998 899999875455788899999999875
Q ss_pred CCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhccCC
Q 023578 211 VQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANFDL 278 (280)
Q Consensus 211 i~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~~~ 278 (280)
|++|++|||+. +|+.+|+++|+.+|++.++ +...+.. ..++++++++.|+.++++.+..|
T Consensus 400 --~~~~v~VGDs~-~Di~aAk~AG~~~I~v~~~--~~~~~~~---~~~d~~i~~l~el~~~l~~~~~~ 459 (459)
T PRK06698 400 --IKEAAVVGDRL-SDINAAKDNGLIAIGCNFD--FAQEDEL---AQADIVIDDLLELKGILSTVQRL 459 (459)
T ss_pred --cceEEEEeCCH-HHHHHHHHCCCeEEEEeCC--CCccccc---CCCCEEeCCHHHHHHHHHHHhcC
Confidence 68999999999 9999999999999999852 2221112 36999999999999999887654
No 27
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.95 E-value=2.1e-26 Score=185.21 Aligned_cols=104 Identities=23% Similarity=0.337 Sum_probs=97.1
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCcE
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEV 216 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~ 216 (280)
....++||+.++|++|+++|++++++||+....++..++++|+. |+.+++++ .+..||+|++|+.+++++|++|++|
T Consensus 89 ~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~ 168 (198)
T TIGR01428 89 LRLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALGVPPDEV 168 (198)
T ss_pred hcCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhCCChhhE
Confidence 35678999999999999999999999999999999999999987 99988865 7889999999999999999999999
Q ss_pred EEEcCCchhhHHHHHHcCCcEEEEcCCC
Q 023578 217 MMVGDSLKDDVACGKRAGAFTCLLDETG 244 (280)
Q Consensus 217 v~iGDs~~~Di~~a~~~G~~~i~v~~~~ 244 (280)
++|||+. +|+.+|+++|+.+|++++++
T Consensus 169 ~~vgD~~-~Di~~A~~~G~~~i~v~r~~ 195 (198)
T TIGR01428 169 LFVASNP-WDLGGAKKFGFKTAWVNRPG 195 (198)
T ss_pred EEEeCCH-HHHHHHHHCCCcEEEecCCC
Confidence 9999999 99999999999999998643
No 28
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.94 E-value=4.3e-26 Score=181.41 Aligned_cols=170 Identities=23% Similarity=0.355 Sum_probs=130.0
Q ss_pred ccEEEEeCCCcccCCCCCHHHHHHHHh---CCch-HHHHH-hcCCChhhHHHHhh-----ccChhHHHHHHHHHHHHHHh
Q 023578 68 LRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE-YKRVK-AENPTGIDILHHIE-----SWSPDLQRHAYQTIADFERQ 137 (280)
Q Consensus 68 ~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~-~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 137 (280)
+|+|+||+||||+|+...+..++...+ |.+. ..... ..+.........+. .+.........+....+...
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFDKQYNTSLGGLSREDILRAILKLRKPGLSLETIHQLAERKNELYRE 80 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCCHHHHHHcCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 488999999999999987766666554 5443 11112 23444444444432 23334444444444444433
Q ss_pred c--CCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCC
Q 023578 138 G--LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQ 212 (280)
Q Consensus 138 ~--~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~ 212 (280)
. .....++||+.++|+.|+++|++++++||+ ..++..++.+|+. |+.+++++ .+..||+|++|..+++++|++
T Consensus 81 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~~ 158 (185)
T TIGR02009 81 LLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGVS 158 (185)
T ss_pred HHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCCC
Confidence 3 235789999999999999999999999998 5678899999998 89888865 678999999999999999999
Q ss_pred CCcEEEEcCCchhhHHHHHHcCCcEEEE
Q 023578 213 PNEVMMVGDSLKDDVACGKRAGAFTCLL 240 (280)
Q Consensus 213 ~~~~v~iGDs~~~Di~~a~~~G~~~i~v 240 (280)
|+++++|||+. +|+++|+++|+.+|+|
T Consensus 159 ~~~~v~IgD~~-~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 159 PNECVVFEDAL-AGVQAARAAGMFAVAV 185 (185)
T ss_pred HHHeEEEeCcH-hhHHHHHHCCCeEeeC
Confidence 99999999999 9999999999999874
No 29
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.94 E-value=1.1e-25 Score=178.99 Aligned_cols=168 Identities=21% Similarity=0.301 Sum_probs=124.5
Q ss_pred EEEEeCCCcccCCCCCHHHHHHHHh---CCchH-HH-HHhcCCChhhHHHHhhc-----cChhHHHHHHHHHHHHHHhc-
Q 023578 70 GVVFDMDGTLTVPVIDFPAMYRAVL---GEDEY-KR-VKAENPTGIDILHHIES-----WSPDLQRHAYQTIADFERQG- 138 (280)
Q Consensus 70 ~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~~-~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~- 138 (280)
+|+||+||||+|+...+..++++.+ |.+.. .. ....+.+..+....+.. ++.+............+...
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDEEFNESLKGVSREDSLERILDLGGKKYSEEEKEELAERKNDYYVELL 80 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999998887777655 55431 11 12234444444443321 23333333333222222111
Q ss_pred --CCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCC
Q 023578 139 --LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQP 213 (280)
Q Consensus 139 --~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~ 213 (280)
.....++||+.++|+.|+++|++++++||+.. ....++++|+. |+.+++++ .+..||+|+.|+.+++++|++|
T Consensus 81 ~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~ 158 (185)
T TIGR01990 81 KELTPADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVSP 158 (185)
T ss_pred HhcCCcccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCCH
Confidence 12347899999999999999999999998753 46688999998 89988765 7789999999999999999999
Q ss_pred CcEEEEcCCchhhHHHHHHcCCcEEEE
Q 023578 214 NEVMMVGDSLKDDVACGKRAGAFTCLL 240 (280)
Q Consensus 214 ~~~v~iGDs~~~Di~~a~~~G~~~i~v 240 (280)
++|++|||+. +|+++|+++|+.+|+|
T Consensus 159 ~~~v~vgD~~-~di~aA~~aG~~~i~v 184 (185)
T TIGR01990 159 SECIGIEDAQ-AGIEAIKAAGMFAVGV 184 (185)
T ss_pred HHeEEEecCH-HHHHHHHHcCCEEEec
Confidence 9999999999 9999999999999987
No 30
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.94 E-value=2.3e-25 Score=177.67 Aligned_cols=172 Identities=17% Similarity=0.235 Sum_probs=128.7
Q ss_pred CccEEEEeCCCcccCCCCCHHHHHHHHh---CCch-HHHH-HhcCCChhhHHHHhhcc-C-hhHHHHHHHHHHH-HHHhc
Q 023578 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE-YKRV-KAENPTGIDILHHIESW-S-PDLQRHAYQTIAD-FERQG 138 (280)
Q Consensus 67 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~-~~~~-~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~-~~~~~ 138 (280)
++|+|+||+||||+|+...+.+++.+.+ |.+. .... ...+....+....+... . ....+.+...... +.+..
T Consensus 4 ~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (188)
T PRK10725 4 RYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAMVALNGSPTWRIAQAIIELNQADLDPHALAREKTEAVKSML 83 (188)
T ss_pred cceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999988777777776 5433 2222 22444444444433221 1 1111222222222 22233
Q ss_pred CCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCc
Q 023578 139 LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNE 215 (280)
Q Consensus 139 ~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~ 215 (280)
.....++|+ .++|..|++. ++++|+||+....++..++++|+. |+.+++++ .+..||+|++|..+++++|++|++
T Consensus 84 ~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~ 161 (188)
T PRK10725 84 LDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQ 161 (188)
T ss_pred hccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHH
Confidence 345567885 6899999876 899999999999999999999998 89988876 678999999999999999999999
Q ss_pred EEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 216 VMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 216 ~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
|++|||+. +|+++|+++|+.+|++.
T Consensus 162 ~l~igDs~-~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 162 CVVFEDAD-FGIQAARAAGMDAVDVR 186 (188)
T ss_pred eEEEeccH-hhHHHHHHCCCEEEeec
Confidence 99999999 99999999999999985
No 31
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.94 E-value=3.1e-25 Score=182.43 Aligned_cols=129 Identities=26% Similarity=0.401 Sum_probs=114.5
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCcEE
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEVM 217 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~v 217 (280)
..+++|++.+.|+.++.+ ++++++||+....+...++.+|+. ||.+++++ .+..||+|++|+.+++++|++|++++
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l 175 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEAL 175 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceEE
Confidence 478999999999999999 999999999999999999999987 99987754 88999999999999999999999999
Q ss_pred EEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHh
Q 023578 218 MVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEA 274 (280)
Q Consensus 218 ~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~ 274 (280)
||||+..+|+.+|+++||.+||+++++... .+....+++.+.++.++.+++..
T Consensus 176 ~VgD~~~~di~gA~~~G~~~vwi~~~~~~~----~~~~~~~~~~i~~l~~l~~~~~~ 228 (229)
T COG1011 176 FVGDSLENDILGARALGMKTVWINRGGKPL----PDALEAPDYEISSLAELLDLLER 228 (229)
T ss_pred EECCChhhhhHHHHhcCcEEEEECCCCCCC----CCCccCCceEEcCHHHHHHHHhh
Confidence 999999888899999999999999754333 11124799999999999998864
No 32
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.93 E-value=5.5e-25 Score=176.80 Aligned_cols=186 Identities=12% Similarity=0.097 Sum_probs=129.3
Q ss_pred ccEEEEeCCCcccCCCCCHHHHHHHHhCCchHHHHHhcCCChhhHHHHhhccChhHHHHHHHHHHHHH-HhcCCCcccCc
Q 023578 68 LRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILHHIESWSPDLQRHAYQTIADFE-RQGLDRLQIMP 146 (280)
Q Consensus 68 ~k~iiFD~DGTL~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p 146 (280)
+|+|+|||||||+|....+..++++. |.+........+...................+. ...+. ..+.....++|
T Consensus 2 ~k~viFDlDGTLiD~~~~~~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p 77 (197)
T PHA02597 2 KPTILTDVDGVLLSWQSGLPYFAQKY-NIPTDHILKMIQDERFRDPGELFGCDQELAKKL---IEKYNNSDFIRYLSAYD 77 (197)
T ss_pred CcEEEEecCCceEchhhccHHHHHhc-CCCHHHHHHHHhHhhhcCHHHHhcccHHHHHHH---hhhhhHHHHHHhccCCC
Confidence 69999999999999777776677665 776432222233222222222222222222222 22222 22334567999
Q ss_pred CHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc------ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEc
Q 023578 147 GTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT------FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (280)
Q Consensus 147 g~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~------fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iG 220 (280)
|+.++|+.|++. ++++++||.........++.+++. |+.+++++.. ||||+.|..+++++| |++++|||
T Consensus 78 G~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~--~~kp~~~~~a~~~~~--~~~~v~vg 152 (197)
T PHA02597 78 DALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLMCGHD--ESKEKLFIKAKEKYG--DRVVCFVD 152 (197)
T ss_pred CHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEEeccC--cccHHHHHHHHHHhC--CCcEEEeC
Confidence 999999999997 578888998766666566777664 4566666553 677899999999999 88999999
Q ss_pred CCchhhHHHHHHc--CCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHH
Q 023578 221 DSLKDDVACGKRA--GAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLS 270 (280)
Q Consensus 221 Ds~~~Di~~a~~~--G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~ 270 (280)
|+. .|+.+|+++ |+.+|++++ +.. .....+++.+.|+.|+..
T Consensus 153 Ds~-~di~aA~~a~~Gi~~i~~~~----~~~---~~~~~~~~~~~~~~~~~~ 196 (197)
T PHA02597 153 DLA-HNLDAAHEALSQLPVIHMLR----GER---DHIPKLAHRVKSWNDIEN 196 (197)
T ss_pred CCH-HHHHHHHHHHcCCcEEEecc----hhh---ccccchhhhhccHHHHhc
Confidence 999 999999999 999999974 332 113477799999999863
No 33
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.93 E-value=1.6e-24 Score=174.98 Aligned_cols=170 Identities=19% Similarity=0.210 Sum_probs=120.7
Q ss_pred cEEEEeCCCcccCCCCCHHHHHHHHh---CCch-HHHH--------Hh-------c----CCChhhH----HHH-hhccC
Q 023578 69 RGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE-YKRV--------KA-------E----NPTGIDI----LHH-IESWS 120 (280)
Q Consensus 69 k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~-~~~~--------~~-------~----~~~~~~~----~~~-~~~~~ 120 (280)
|+|+||+||||+|+...+..++++++ |.+. .... +. . +....++ ... +....
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRAG 80 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 58999999999999998888777765 5542 1111 00 0 2122111 111 11111
Q ss_pred hhHHHHHHHHHHHHHHhcC--CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCC
Q 023578 121 PDLQRHAYQTIADFERQGL--DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPY 195 (280)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~--~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~ 195 (280)
.............+.+.+. ....++||+.++|+.|+++|++++|+||+... ++..++.+|+. |+.+++++ .+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i~~s~~~~~~ 159 (203)
T TIGR02252 81 VPDPESFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFVVTSYEVGAE 159 (203)
T ss_pred CCCchhHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceEEeecccCCC
Confidence 0111122222333332221 33578999999999999999999999998765 47788999987 89888754 7889
Q ss_pred CCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEE
Q 023578 196 KPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCL 239 (280)
Q Consensus 196 Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~ 239 (280)
||+|++|..+++++|++|++|++|||+..+|+++|+++|+.+|+
T Consensus 160 KP~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 160 KPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred CCCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 99999999999999999999999999964699999999999875
No 34
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.93 E-value=3.7e-25 Score=174.00 Aligned_cols=167 Identities=22% Similarity=0.328 Sum_probs=125.8
Q ss_pred EEEeCCCcccCCCCCHHHHHHHHh----CCch-HHHHHh-cCCChhhHHHHhhccChhHHHHHHHHHHHHHHhcCCCccc
Q 023578 71 VVFDMDGTLTVPVIDFPAMYRAVL----GEDE-YKRVKA-ENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQI 144 (280)
Q Consensus 71 iiFD~DGTL~d~~~~~~~~~~~~~----g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (280)
|+||+||||+|+...+.+++...+ +.+. ...++. .+....+....+............+.+.++ .......+
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 78 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEISAEELRELFGKSYEEALERLLERFGIDPEEIQELFREY--NLESKLQP 78 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHGGEEE
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHhhhccchhHHHHHHHhhhh--hhhhccch
Confidence 799999999998876666665532 4433 222222 222333333333222222222222333333 12356789
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCcEEEEcC
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEVMMVGD 221 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGD 221 (280)
+||+.++|+.|+++|++++++||+....++..++.+|+. |+.+++++ .+..||+++.|+.+++++|++|++|++|||
T Consensus 79 ~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~vgD 158 (176)
T PF13419_consen 79 YPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEILFVGD 158 (176)
T ss_dssp STTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEEEES
T ss_pred hhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEEEEeC
Confidence 999999999999999999999999999999999999998 89988765 788999999999999999999999999999
Q ss_pred CchhhHHHHHHcCCcEEEE
Q 023578 222 SLKDDVACGKRAGAFTCLL 240 (280)
Q Consensus 222 s~~~Di~~a~~~G~~~i~v 240 (280)
+. .|+++|+++|+.+|+|
T Consensus 159 ~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 159 SP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp SH-HHHHHHHHTTSEEEEE
T ss_pred CH-HHHHHHHHcCCeEEeC
Confidence 99 9999999999999986
No 35
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.93 E-value=3.9e-24 Score=207.67 Aligned_cols=199 Identities=19% Similarity=0.205 Sum_probs=149.0
Q ss_pred CCCccEEEEeCCCcccCCCCCHHHHHHHHh---CCch--HHHHHhcCCChhhHHHHhhc---cChhHHHHHH-HHHHHHH
Q 023578 65 KTRLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVKAENPTGIDILHHIES---WSPDLQRHAY-QTIADFE 135 (280)
Q Consensus 65 ~~~~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~ 135 (280)
.+++|+|+|||||||+|+...+.+++.+++ |.+. .......+....+....+.. +.....+... ...+.+.
T Consensus 72 ~~~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~e~~~~~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 151 (1057)
T PLN02919 72 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFVPFMGTGEANFLGGVASVKGVKGFDPDAAKKRFFEIYL 151 (1057)
T ss_pred CCCCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999998877777665 5543 22333455555554443321 1111111211 1222222
Q ss_pred HhcC--CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---ccceeeCC-CCCCCCChHHHHHHHHhc
Q 023578 136 RQGL--DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPALSRE-FRPYKPDPGPLLHICSTW 209 (280)
Q Consensus 136 ~~~~--~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---fd~v~~~~-~~~~Kp~~~~~~~~~~~l 209 (280)
+.+. ....++||+.++|++|+++|++++|+||.....++..++++|+. |+.+++++ ....||+|++|..+++++
T Consensus 152 ~~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~l 231 (1057)
T PLN02919 152 EKYAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKIL 231 (1057)
T ss_pred HHhhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHc
Confidence 2211 12347999999999999999999999999999999999999984 89998876 678899999999999999
Q ss_pred CCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHH
Q 023578 210 EVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEV 268 (280)
Q Consensus 210 gi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl 268 (280)
|++|++|++|||+. .|+++|+++||.+|++.+. +...++. ..+++++++++.|+
T Consensus 232 gv~p~e~v~IgDs~-~Di~AA~~aGm~~I~v~~~--~~~~~L~--~~~a~~vi~~l~el 285 (1057)
T PLN02919 232 GVPTSECVVIEDAL-AGVQAARAAGMRCIAVTTT--LSEEILK--DAGPSLIRKDIGNI 285 (1057)
T ss_pred CcCcccEEEEcCCH-HHHHHHHHcCCEEEEECCC--CCHHHHh--hCCCCEEECChHHC
Confidence 99999999999999 9999999999999999863 2333333 36899999999995
No 36
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.93 E-value=2.2e-24 Score=175.21 Aligned_cols=172 Identities=15% Similarity=0.111 Sum_probs=118.0
Q ss_pred ccEEEEeCCCcccCCCCCHHHHHHHHhCCc---hHHHHH-hcCCChhhHHHHhhccChhHHHHHHHHHHH----------
Q 023578 68 LRGVVFDMDGTLTVPVIDFPAMYRAVLGED---EYKRVK-AENPTGIDILHHIESWSPDLQRHAYQTIAD---------- 133 (280)
Q Consensus 68 ~k~iiFD~DGTL~d~~~~~~~~~~~~~g~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 133 (280)
+|+|+||+||||+|+.. ....|...++.. ...... ..+.......+.+.. .....+.....+.+
T Consensus 2 ik~viFDldGtL~d~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 79 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPG-VMRRWETERGLPGLKDFIVTVNITGPDFNPWARTFER-GELTAEAFDGLFRHEYGLRLGHDV 79 (211)
T ss_pred ceEEEEecCCceecCHH-HHHHHHHHcCCCCCccHHHHHHhcCCCCChHHHHHHc-CCCCHHHHHHHHHHHhccccCCCc
Confidence 68999999999999866 666777665443 221122 223332222222211 11111111111111
Q ss_pred ----HHHh-cCCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHH--HHHHHHHcCCc--ccceeeCC-CCCCCCChHHHH
Q 023578 134 ----FERQ-GLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEA--VDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLL 203 (280)
Q Consensus 134 ----~~~~-~~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~--~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~ 203 (280)
+... ......++||+.++|+.|+++|++++|+||+.... ....+..+++. |+.+++++ .+..||+|++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~ 159 (211)
T TIGR02247 80 RIAPVFPLLYGENTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQ 159 (211)
T ss_pred CchhhHHHHhccccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHH
Confidence 1111 11346789999999999999999999999986543 22233445654 89888754 778999999999
Q ss_pred HHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcC
Q 023578 204 HICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 204 ~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~ 242 (280)
.+++++|++|++|+||||+. .|+.+|+++|+.+|++.+
T Consensus 160 ~~~~~~g~~~~~~l~i~D~~-~di~aA~~aG~~~i~v~~ 197 (211)
T TIGR02247 160 LMLERLGVAPEECVFLDDLG-SNLKPAAALGITTIKVSD 197 (211)
T ss_pred HHHHHcCCCHHHeEEEcCCH-HHHHHHHHcCCEEEEECC
Confidence 99999999999999999999 999999999999999873
No 37
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.92 E-value=3.3e-24 Score=169.84 Aligned_cols=129 Identities=22% Similarity=0.245 Sum_probs=104.8
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCch---------------HHHHHHHHHcCCcccceeeC------CCCCCCCCh
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIK---------------EAVDLFHNRFGITFSPALSR------EFRPYKPDP 199 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~---------------~~~~~~l~~~g~~fd~v~~~------~~~~~Kp~~ 199 (280)
.+.++||+.++|++|+++|++++|+||... ..+...++.+|+.|+.++.+ +.+..||+|
T Consensus 27 ~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~f~~i~~~~~~~~~~~~~~KP~p 106 (181)
T PRK08942 27 EWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRLDGIYYCPHHPEDGCDCRKPKP 106 (181)
T ss_pred HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcCCCCCH
Confidence 346899999999999999999999999862 33455677788777776542 246789999
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCC--CEEEcCHHHHHHHHHh
Q 023578 200 GPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQP--DFRVSSLTEVLSILEA 274 (280)
Q Consensus 200 ~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~--d~v~~~~~dl~~~l~~ 274 (280)
++|..+++++|++|++|++|||+. +|+.+|+++|+.++++..+ ....... ...+ +++++++.++.+++..
T Consensus 107 ~~~~~~~~~l~~~~~~~~~VgDs~-~Di~~A~~aG~~~i~v~~g--~~~~~~~--~~~~~~~~ii~~l~el~~~l~~ 178 (181)
T PRK08942 107 GMLLSIAERLNIDLAGSPMVGDSL-RDLQAAAAAGVTPVLVRTG--KGVTTLA--EGAAPGTWVLDSLADLPQALKK 178 (181)
T ss_pred HHHHHHHHHcCCChhhEEEEeCCH-HHHHHHHHCCCeEEEEcCC--CCchhhh--cccCCCceeecCHHHHHHHHHh
Confidence 999999999999999999999999 9999999999999998742 2221222 2345 9999999999998764
No 38
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.92 E-value=4.9e-24 Score=167.99 Aligned_cols=124 Identities=20% Similarity=0.221 Sum_probs=101.4
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCch---------------HHHHHHHHHcCCcccceeeC------------CCC
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIK---------------EAVDLFHNRFGITFSPALSR------------EFR 193 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~---------------~~~~~~l~~~g~~fd~v~~~------------~~~ 193 (280)
...++||+.++|++|+++|++++|+||... ..+...++.+++.|+.++.+ +..
T Consensus 24 ~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 103 (176)
T TIGR00213 24 NFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVDLDGIYYCPHHPEGVEEFRQVCD 103 (176)
T ss_pred HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCCccEEEECCCCCcccccccCCCC
Confidence 446899999999999999999999999874 34456677777777776542 344
Q ss_pred CCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcE-EEEcCCCCCCccccccCCCCCCEEEcCHHHHH
Q 023578 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFT-CLLDETGRYSADDFTKSNLQPDFRVSSLTEVL 269 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~-i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~ 269 (280)
.+||+|++|..+++++|+++++|+||||+. +|+++|+++|+.+ +++.+ +..........++++++++.||.
T Consensus 104 ~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~-~Di~aA~~aG~~~~i~v~~----g~~~~~~~~~~ad~~i~~~~el~ 175 (176)
T TIGR00213 104 CRKPKPGMLLQARKELHIDMAQSYMVGDKL-EDMQAGVAAKVKTNVLVRT----GKPITPEAENIADWVLNSLADLP 175 (176)
T ss_pred CCCCCHHHHHHHHHHcCcChhhEEEEcCCH-HHHHHHHHCCCcEEEEEec----CCcccccccccCCEEeccHHHhh
Confidence 689999999999999999999999999999 9999999999998 78874 22222221357999999999986
No 39
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.91 E-value=8.3e-24 Score=168.13 Aligned_cols=160 Identities=19% Similarity=0.187 Sum_probs=115.7
Q ss_pred EEEEeCCCcccCCCCCHHHHHHHHh--------CCchHHH--HH-----hcCCChhhHHHHhhccChhHHHHHHHHHHHH
Q 023578 70 GVVFDMDGTLTVPVIDFPAMYRAVL--------GEDEYKR--VK-----AENPTGIDILHHIESWSPDLQRHAYQTIADF 134 (280)
Q Consensus 70 ~iiFD~DGTL~d~~~~~~~~~~~~~--------g~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (280)
+|+||+||||+|+...+..++.+.+ |.+.... .+ ..+......... ..... +...+ .+
T Consensus 2 ~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~g~~~~~~~~~-~~~~~---~~~~~---~~ 74 (184)
T TIGR01993 2 VWFFDLDNTLYPHSAGIFLQIDRNITEFVAARLKLSEEEARVLRKDYYREYGTTLAGLMIL-HEIDA---DEYLR---YV 74 (184)
T ss_pred eEEEeCCCCCCCCcccHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHchHHHHHHHh-hCCCH---HHHHH---HH
Confidence 6999999999999887777766532 4443211 11 112111111111 01111 11111 11
Q ss_pred HH-hcCCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCC----CCCChHHHHHHH
Q 023578 135 ER-QGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRP----YKPDPGPLLHIC 206 (280)
Q Consensus 135 ~~-~~~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~----~Kp~~~~~~~~~ 206 (280)
.+ .......++||+.++|+.|+ ++++++||+....+...++.+|+. |+.+++++ .+. .||+|++|+.++
T Consensus 75 ~~~~~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~ 151 (184)
T TIGR01993 75 HGRLPYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKAL 151 (184)
T ss_pred hccCCHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHH
Confidence 11 11134568999999999998 479999999999999999999997 99998876 444 599999999999
Q ss_pred HhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEE
Q 023578 207 STWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLL 240 (280)
Q Consensus 207 ~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v 240 (280)
+++|++|+++++|||+. .|+++|+++|+.+|+|
T Consensus 152 ~~~~~~~~~~l~vgD~~-~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 152 REAGVDPERAIFFDDSA-RNIAAAKALGMKTVLV 184 (184)
T ss_pred HHhCCCccceEEEeCCH-HHHHHHHHcCCEEeeC
Confidence 99999999999999999 9999999999999875
No 40
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.91 E-value=3.2e-23 Score=164.46 Aligned_cols=97 Identities=25% Similarity=0.412 Sum_probs=89.4
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCcEEE
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEVMM 218 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~v~ 218 (280)
..++||+.++|+.|+++|++++++||+.... .....++|+. |+.+++++ .+..||+|+.|+.+++++|++|++|++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~ 162 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLGLKPEECLF 162 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcCCCcceEEE
Confidence 6899999999999999999999999999888 6666668987 89988754 788999999999999999999999999
Q ss_pred EcCCchhhHHHHHHcCCcEEEE
Q 023578 219 VGDSLKDDVACGKRAGAFTCLL 240 (280)
Q Consensus 219 iGDs~~~Di~~a~~~G~~~i~v 240 (280)
|||+. .|+++|+++|+.+|+|
T Consensus 163 vgD~~-~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 163 VDDSP-AGIEAAKAAGMHTVLV 183 (183)
T ss_pred EcCCH-HHHHHHHHcCCEEEeC
Confidence 99999 9999999999999874
No 41
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.90 E-value=8.6e-23 Score=166.79 Aligned_cols=188 Identities=19% Similarity=0.274 Sum_probs=126.2
Q ss_pred CCCccEEEEeCCCcccCCCCCHHHHHHHHhCCchH-HHH-Hh--cCC-ChhhHH-HHhhccChhHHHHHHHHHHHHHHhc
Q 023578 65 KTRLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEY-KRV-KA--ENP-TGIDIL-HHIESWSPDLQRHAYQTIADFERQG 138 (280)
Q Consensus 65 ~~~~k~iiFD~DGTL~d~~~~~~~~~~~~~g~~~~-~~~-~~--~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (280)
.+++|+++||+||||+++.. +....+.. |.+.. ... .. .+. ...... +.+..+..... +..+..
T Consensus 11 ~~~~k~iiFD~DGTL~~~~~-~~~l~~~~-g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 80 (219)
T TIGR00338 11 LRSKKLVVFDMDSTLINAET-IDEIAKIA-GVEEEVSEITERAMRGELDFKASLRERVALLKGLPV--------ELLKEV 80 (219)
T ss_pred hccCCEEEEeCcccCCCchH-HHHHHHHh-CCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCH--------HHHHHH
Confidence 34579999999999998753 34444444 66431 111 11 111 111111 11111111111 111222
Q ss_pred CCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--cc-------ceeeC----CCCCCCCChHHHHHH
Q 023578 139 LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FS-------PALSR----EFRPYKPDPGPLLHI 205 (280)
Q Consensus 139 ~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd-------~v~~~----~~~~~Kp~~~~~~~~ 205 (280)
.....+.||+.++++.|+++|++++|+||+....++.+++.+|+. |. ..+++ ....++|++..++.+
T Consensus 81 ~~~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 160 (219)
T TIGR00338 81 RENLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLIL 160 (219)
T ss_pred HhcCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHHHHHH
Confidence 234578999999999999999999999999999999999999987 42 22222 223457789999999
Q ss_pred HHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEc--CHHHHHHHH
Q 023578 206 CSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVS--SLTEVLSIL 272 (280)
Q Consensus 206 ~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~--~~~dl~~~l 272 (280)
++++|+++++|+||||+. +|+.+|+++|+.+++ + +...+++ .+++++. ++.++..+|
T Consensus 161 ~~~~~~~~~~~i~iGDs~-~Di~aa~~ag~~i~~-~-----~~~~~~~---~a~~~i~~~~~~~~~~~~ 219 (219)
T TIGR00338 161 LRKEGISPENTVAVGDGA-NDLSMIKAAGLGIAF-N-----AKPKLQQ---KADICINKKDLTDILPLL 219 (219)
T ss_pred HHHcCCCHHHEEEEECCH-HHHHHHHhCCCeEEe-C-----CCHHHHH---hchhccCCCCHHHHHhhC
Confidence 999999999999999999 999999999998654 2 2223333 7888876 667777653
No 42
>PLN02811 hydrolase
Probab=99.90 E-value=4.6e-23 Score=168.43 Aligned_cols=190 Identities=19% Similarity=0.245 Sum_probs=134.0
Q ss_pred CCCcccCCCCCHHHHHHHHh---CCch-HHHHH-hcCCChhhHHHHhhc---cChh-HHHHHHHHHHHHHHhcCCCcccC
Q 023578 75 MDGTLTVPVIDFPAMYRAVL---GEDE-YKRVK-AENPTGIDILHHIES---WSPD-LQRHAYQTIADFERQGLDRLQIM 145 (280)
Q Consensus 75 ~DGTL~d~~~~~~~~~~~~~---g~~~-~~~~~-~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 145 (280)
|||||+|+...+..+|.+++ |.+. ..... ..+.........+.. .... ..+........+.........++
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTFDWSLKAKMMGKKAIEAARIFVEESGLSDSLSPEDFLVEREAMLQDLFPTSDLM 80 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCCCHHHHHHccCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhhCCCC
Confidence 79999999998888887776 5443 22222 345555444444321 2211 12222233333333333456789
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCCchHHHHH-HHHHcCCc--ccceeeCC---CCCCCCChHHHHHHHHhcC---CCCCcE
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDL-FHNRFGIT--FSPALSRE---FRPYKPDPGPLLHICSTWE---VQPNEV 216 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~-~l~~~g~~--fd~v~~~~---~~~~Kp~~~~~~~~~~~lg---i~~~~~ 216 (280)
||+.++|+.|+++|++++|+||........ ..+..++. |+.+++++ .+..||+|++|..+++++| ++|++|
T Consensus 81 ~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~ 160 (220)
T PLN02811 81 PGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVDPGKV 160 (220)
T ss_pred ccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCCccce
Confidence 999999999999999999999988765543 33334554 78888865 5578999999999999997 999999
Q ss_pred EEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHH
Q 023578 217 MMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLS 270 (280)
Q Consensus 217 v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~ 270 (280)
+||||+. .|+++|+++|+.+|++.++ ...... ...++++++++.|+..
T Consensus 161 v~IgDs~-~di~aA~~aG~~~i~v~~~--~~~~~~---~~~~d~vi~~~~e~~~ 208 (220)
T PLN02811 161 LVFEDAP-SGVEAAKNAGMSVVMVPDP--RLDKSY---CKGADQVLSSLLDFKP 208 (220)
T ss_pred EEEeccH-hhHHHHHHCCCeEEEEeCC--CCcHhh---hhchhhHhcCHhhCCH
Confidence 9999999 9999999999999999752 211122 2378999999988543
No 43
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.90 E-value=1.3e-22 Score=162.98 Aligned_cols=164 Identities=18% Similarity=0.227 Sum_probs=116.9
Q ss_pred cEEEEeCCCcccCCCCCHHHHHHHHh---C-Cch-HHHHHh-cCCCh---------hhHHHHhhcc------ChhHHHHH
Q 023578 69 RGVVFDMDGTLTVPVIDFPAMYRAVL---G-EDE-YKRVKA-ENPTG---------IDILHHIESW------SPDLQRHA 127 (280)
Q Consensus 69 k~iiFD~DGTL~d~~~~~~~~~~~~~---g-~~~-~~~~~~-~~~~~---------~~~~~~~~~~------~~~~~~~~ 127 (280)
++|+|||||||+|+...+..++++.+ | .+. ...+.. .+.+. ......+... .....+.+
T Consensus 1 ~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (197)
T TIGR01548 1 QALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVTHADIDHTKLAGNANNDWQLTHRLVVDGLNSASSERVRDAPTLEAV 80 (197)
T ss_pred CceEEecCceEEechHHHHHHHHHHHHHHcCCCCCHHHHHHHHHccCccCchHHHHHHHHHhhhcccchhccCCccHHHH
Confidence 36999999999999998888777776 3 222 222221 22111 1122222111 12233344
Q ss_pred HHHHHHHHHhcC----------CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCCCCCC
Q 023578 128 YQTIADFERQGL----------DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRPY 195 (280)
Q Consensus 128 ~~~~~~~~~~~~----------~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~~~~~ 195 (280)
...+.+++.... ....+.++..++|+.|+++|++++|+||+....++..++.+|+. |+.+++++....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~ 160 (197)
T TIGR01548 81 TAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIWMEDCPP 160 (197)
T ss_pred HHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEeecCCCC
Confidence 444444433211 12245566799999999999999999999999999999999998 898888774333
Q ss_pred CCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHc
Q 023578 196 KPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRA 233 (280)
Q Consensus 196 Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~ 233 (280)
||+|+.+..+++++|+++++|++|||+. +|+++|+++
T Consensus 161 KP~p~~~~~~~~~~~~~~~~~i~vGD~~-~Di~aA~~a 197 (197)
T TIGR01548 161 KPNPEPLILAAKALGVEACHAAMVGDTV-DDIITGRKA 197 (197)
T ss_pred CcCHHHHHHHHHHhCcCcccEEEEeCCH-HHHHHHHhC
Confidence 9999999999999999999999999999 999999875
No 44
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.90 E-value=1.7e-22 Score=162.56 Aligned_cols=99 Identities=10% Similarity=0.175 Sum_probs=88.4
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHH-cCCc--ccceeeC-CCCCCCCChHHHHHHHHhcCCCCCcEEE
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNR-FGIT--FSPALSR-EFRPYKPDPGPLLHICSTWEVQPNEVMM 218 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~-~g~~--fd~v~~~-~~~~~Kp~~~~~~~~~~~lgi~~~~~v~ 218 (280)
.++||+.++|+.|+++|++++|+||+.....+..+.. .++. |+.++++ +.+.+||+|++|+.+++++|++|++|+|
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~ 163 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVF 163 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHcCCChhHeEE
Confidence 5899999999999999999999999988776655544 3554 8888775 4889999999999999999999999999
Q ss_pred EcCCchhhHHHHHHcCCcEEEEcC
Q 023578 219 VGDSLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 219 iGDs~~~Di~~a~~~G~~~i~v~~ 242 (280)
|||+. .|+.+|+++|+.++++.+
T Consensus 164 vgD~~-~di~aA~~aG~~~i~~~~ 186 (199)
T PRK09456 164 FDDNA-DNIEAANALGITSILVTD 186 (199)
T ss_pred eCCCH-HHHHHHHHcCCEEEEecC
Confidence 99999 999999999999999875
No 45
>PRK06769 hypothetical protein; Validated
Probab=99.90 E-value=1.4e-22 Score=158.99 Aligned_cols=129 Identities=17% Similarity=0.281 Sum_probs=100.6
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchH--------HHHHHHHHcCCc--cccee-eCC-CCCCCCChHHHHHHHHh
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKE--------AVDLFHNRFGIT--FSPAL-SRE-FRPYKPDPGPLLHICST 208 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~--------~~~~~l~~~g~~--fd~v~-~~~-~~~~Kp~~~~~~~~~~~ 208 (280)
...++||+.++|++|+++|++++|+||.... .....++.+|+. |.... +++ ....||+|++|..++++
T Consensus 26 ~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~ 105 (173)
T PRK06769 26 SFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEK 105 (173)
T ss_pred HeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 3468999999999999999999999997641 123346677764 22221 222 46789999999999999
Q ss_pred cCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCc-----cccccCCCCCCEEEcCHHHHHHHH
Q 023578 209 WEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSA-----DDFTKSNLQPDFRVSSLTEVLSIL 272 (280)
Q Consensus 209 lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~-----~~~~~~~~~~d~v~~~~~dl~~~l 272 (280)
+|++|++|+||||+. +|+.+|+++|+.+|++.++..... .+.. ...++++++++.|+.++|
T Consensus 106 l~~~p~~~i~IGD~~-~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~--~~~~~~~~~~~~el~~~l 171 (173)
T PRK06769 106 HGLDLTQCAVIGDRW-TDIVAAAKVNATTILVRTGAGYDALHTYRDKWA--HIEPNYIAENFEDAVNWI 171 (173)
T ss_pred cCCCHHHeEEEcCCH-HHHHHHHHCCCeEEEEecCCCchhhhhhhcccc--cCCCcchhhCHHHHHHHH
Confidence 999999999999999 999999999999999986332211 1111 357999999999998875
No 46
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.90 E-value=2.2e-22 Score=155.29 Aligned_cols=147 Identities=26% Similarity=0.419 Sum_probs=108.4
Q ss_pred EEEEeCCCcccCCCCCHHHHHHHHh---CCchHHHHH-hcCCChhhHHHHhhccChhHHHHHHHHHHHHHHhcCCCcccC
Q 023578 70 GVVFDMDGTLTVPVIDFPAMYRAVL---GEDEYKRVK-AENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIM 145 (280)
Q Consensus 70 ~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (280)
+|+||+||||+|+...+..++.+.+ |... ..++ ..+. ...........++++.. +......+
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~------------~~~~~~~~~~~~~~~~~-~~~~~~~~ 66 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGEDF-QALKALRGL------------AEELLYRIATSFEELLG-YDAEEAYI 66 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcccH-HHHHHHHcc------------ChHHHHHHHHHHHHHhC-cchhheec
Confidence 4899999999999887777776664 3221 1111 1111 11111111111222221 22345678
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCcEEEEcCC
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs 222 (280)
||+.++++.|+++|++++++||+....+...++.+ +. |+.+++.+ .+ +||+|++|..+++++|+++ +|++|||+
T Consensus 67 ~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l~iGDs 143 (154)
T TIGR01549 67 RGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-EVLHVGDN 143 (154)
T ss_pred cCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-CEEEEeCC
Confidence 99999999999999999999999999999988886 44 88888866 55 9999999999999999999 99999999
Q ss_pred chhhHHHHHHcC
Q 023578 223 LKDDVACGKRAG 234 (280)
Q Consensus 223 ~~~Di~~a~~~G 234 (280)
. .|+++|+++|
T Consensus 144 ~-~Di~aa~~aG 154 (154)
T TIGR01549 144 L-NDIEGARNAG 154 (154)
T ss_pred H-HHHHHHHHcc
Confidence 9 9999999987
No 47
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.89 E-value=1.6e-22 Score=151.95 Aligned_cols=98 Identities=23% Similarity=0.345 Sum_probs=88.1
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCc--------hHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhc-CCC
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNI--------KEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTW-EVQ 212 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~--------~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~l-gi~ 212 (280)
..++||+.++|+.|+++|++++++||+. ...++..++.+|+.++.++.+. ...||+|+.|+.+++++ +++
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~KP~~~~~~~~~~~~~~~~ 102 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYACP-HCRKPKPGMFLEALKRFNEID 102 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEECC-CCCCCChHHHHHHHHHcCCCC
Confidence 3689999999999999999999999998 7788889999999855544444 67799999999999999 599
Q ss_pred CCcEEEEcC-CchhhHHHHHHcCCcEEEEc
Q 023578 213 PNEVMMVGD-SLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 213 ~~~~v~iGD-s~~~Di~~a~~~G~~~i~v~ 241 (280)
|++++|||| +. .|+.+|+++|+.+|+++
T Consensus 103 ~~~~v~IGD~~~-~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 103 PEESVYVGDQDL-TDLQAAKRAGLAFILVA 131 (132)
T ss_pred hhheEEEcCCCc-ccHHHHHHCCCeEEEee
Confidence 999999999 68 99999999999999986
No 48
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.89 E-value=2e-22 Score=154.06 Aligned_cols=100 Identities=22% Similarity=0.317 Sum_probs=85.9
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCch---------------HHHHHHHHHcCCcccc-eee----CC-CCCCCCChH
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIK---------------EAVDLFHNRFGITFSP-ALS----RE-FRPYKPDPG 200 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~~---------------~~~~~~l~~~g~~fd~-v~~----~~-~~~~Kp~~~ 200 (280)
..++||+.++|+.|+++|++++|+||+.. ..+...++.+|+.++. +++ ++ .+..||+|+
T Consensus 26 ~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~ 105 (147)
T TIGR01656 26 WQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPG 105 (147)
T ss_pred eEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHH
Confidence 36899999999999999999999999873 4566778899987332 222 23 456799999
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcC
Q 023578 201 PLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 201 ~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~ 242 (280)
+|+.+++++|+++++|+||||+. .|+++|+++|+.+|++++
T Consensus 106 ~~~~~~~~~~~~~~e~i~IGDs~-~Di~~A~~~Gi~~v~i~~ 146 (147)
T TIGR01656 106 LILEALKRLGVDASRSLVVGDRL-RDLQAARNAGLAAVLLVD 146 (147)
T ss_pred HHHHHHHHcCCChHHEEEEcCCH-HHHHHHHHCCCCEEEecC
Confidence 99999999999999999999998 999999999999999974
No 49
>PLN02954 phosphoserine phosphatase
Probab=99.88 E-value=2.2e-21 Score=159.00 Aligned_cols=190 Identities=17% Similarity=0.253 Sum_probs=125.0
Q ss_pred CccEEEEeCCCcccCCCCCHHHHHHHHhCCch-H-HHHHh-cC--CChhhHHHH-hhccChhHHHHHHHHHHHHHHhcCC
Q 023578 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDE-Y-KRVKA-EN--PTGIDILHH-IESWSPDLQRHAYQTIADFERQGLD 140 (280)
Q Consensus 67 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~g~~~-~-~~~~~-~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (280)
++|+|+|||||||+|+.. +....+.. |.+. . ..... .+ ....+.+.. +..+.. .. +....+.+..
T Consensus 11 ~~k~viFDfDGTL~~~~~-~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~-- 81 (224)
T PLN02954 11 SADAVCFDVDSTVCVDEG-IDELAEFC-GAGEAVAEWTAKAMGGSVPFEEALAARLSLFKP-SL----SQVEEFLEKR-- 81 (224)
T ss_pred cCCEEEEeCCCcccchHH-HHHHHHHc-CChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCC-CH----HHHHHHHHHc--
Confidence 479999999999998733 34444444 6643 1 11211 11 222222222 222221 11 1122222221
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc----ccc--------eee-CC----CCCCCCChHHHH
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT----FSP--------ALS-RE----FRPYKPDPGPLL 203 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~----fd~--------v~~-~~----~~~~Kp~~~~~~ 203 (280)
...++||+.++++.|+++|++++|+|++....++.+++.+|+. |.. .+. .+ ....++|+..++
T Consensus 82 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~ 161 (224)
T PLN02954 82 PPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQ 161 (224)
T ss_pred cCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHH
Confidence 3468999999999999999999999999999999999999985 221 111 11 123567889999
Q ss_pred HHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHH
Q 023578 204 HICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSIL 272 (280)
Q Consensus 204 ~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l 272 (280)
.+++++|. +++++|||+. +|+.+++++|+.++.... + +...+.. ...+++++.++.++.+++
T Consensus 162 ~~~~~~~~--~~~i~iGDs~-~Di~aa~~~~~~~~~~~~-~-~~~~~~~--~~~~~~~i~~~~el~~~~ 223 (224)
T PLN02954 162 HIKKKHGY--KTMVMIGDGA-TDLEARKPGGADLFIGYG-G-VQVREAV--AAKADWFVTDFQDLIEVL 223 (224)
T ss_pred HHHHHcCC--CceEEEeCCH-HHHHhhhcCCCCEEEecC-C-CccCHHH--HhcCCEEECCHHHHHHhh
Confidence 99999885 6899999999 999999998887665432 1 1111211 357999999999998875
No 50
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.88 E-value=2.8e-21 Score=154.65 Aligned_cols=197 Identities=21% Similarity=0.239 Sum_probs=153.7
Q ss_pred CCccEEEEeCCCcccCCCCCHHHHHHHHh---CCch--HHHHHhcCCChhhHHHHhhcc--ChhHHHHHHHHHHHHHHhc
Q 023578 66 TRLRGVVFDMDGTLTVPVIDFPAMYRAVL---GEDE--YKRVKAENPTGIDILHHIESW--SPDLQRHAYQTIADFERQG 138 (280)
Q Consensus 66 ~~~k~iiFD~DGTL~d~~~~~~~~~~~~~---g~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 138 (280)
..+.+++||+||||+|+...+.+++++++ |.+. ....+..|....+..+.+-.+ .+...+++....+......
T Consensus 8 ~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~~~~~~ 87 (222)
T KOG2914|consen 8 LKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEEILDRL 87 (222)
T ss_pred cceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Confidence 34789999999999999999999888887 4433 344445777777777766422 3344555555555666666
Q ss_pred CCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcC-Cc--ccceeeC---CCCCCCCChHHHHHHHHhcCCC
Q 023578 139 LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFG-IT--FSPALSR---EFRPYKPDPGPLLHICSTWEVQ 212 (280)
Q Consensus 139 ~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g-~~--fd~v~~~---~~~~~Kp~~~~~~~~~~~lgi~ 212 (280)
.....+.||+..+++.|+.+|++++++|+..+...+...++++ +. |..++.+ ++..+||+|++|..+++.+|..
T Consensus 88 ~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~ 167 (222)
T KOG2914|consen 88 FMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVP 167 (222)
T ss_pred ccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCC
Confidence 7788899999999999999999999999998888888888777 33 6665553 3678999999999999999998
Q ss_pred C-CcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHH
Q 023578 213 P-NEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEV 268 (280)
Q Consensus 213 ~-~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl 268 (280)
| +.|++++|++ ..+++|+++||.+|++.+ .. ........+++++.++.+.
T Consensus 168 ~~~k~lVfeds~-~Gv~aa~aagm~vi~v~~---~~--~~~~~~~~~~~~~~~~~~~ 218 (222)
T KOG2914|consen 168 PPSKCLVFEDSP-VGVQAAKAAGMQVVGVAT---PD--LSNLFSAGATLILESLEDF 218 (222)
T ss_pred CccceEEECCCH-HHHHHHHhcCCeEEEecC---CC--cchhhhhccceeccccccc
Confidence 8 9999999999 999999999999999985 11 1111245777777776653
No 51
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.88 E-value=2.4e-21 Score=165.28 Aligned_cols=190 Identities=17% Similarity=0.207 Sum_probs=127.7
Q ss_pred CCCccEEEEeCCCcccCCCCCHHHHHHHHhCCchH-H-HHHhcCCChhhHHHH----hhccChhHHHHHHHHHHHHHHhc
Q 023578 65 KTRLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEY-K-RVKAENPTGIDILHH----IESWSPDLQRHAYQTIADFERQG 138 (280)
Q Consensus 65 ~~~~k~iiFD~DGTL~d~~~~~~~~~~~~~g~~~~-~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 138 (280)
...+++++|||||||+.. ..+.+..+.. |.... . ..........+..+. +..+.... ....+..
T Consensus 107 ~~~~~LvvfDmDGTLI~~-e~i~eia~~~-g~~~~v~~it~~~m~Geldf~esl~~rv~~l~g~~--------~~il~~v 176 (322)
T PRK11133 107 LRTPGLLVMDMDSTAIQI-ECIDEIAKLA-GTGEEVAEVTERAMRGELDFEASLRQRVATLKGAD--------ANILQQV 176 (322)
T ss_pred ccCCCEEEEECCCCCcch-HHHHHHHHHh-CCchHHHHHHHHHHcCCcCHHHHHHHHHHHhCCCC--------HHHHHHH
Confidence 456899999999999932 3344444433 65441 1 111111111222211 11111110 0111222
Q ss_pred CCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--c-------cceee----CCCCCCCCChHHHHHH
Q 023578 139 LDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--F-------SPALS----REFRPYKPDPGPLLHI 205 (280)
Q Consensus 139 ~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--f-------d~v~~----~~~~~~Kp~~~~~~~~ 205 (280)
....++.||+.++++.|+++|++++|+|++...+.+.+.+++|++ + +..++ ++...+|||++.++.+
T Consensus 177 ~~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~l 256 (322)
T PRK11133 177 RENLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRL 256 (322)
T ss_pred HHhCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHH
Confidence 235679999999999999999999999999999999999999976 1 22232 2334678999999999
Q ss_pred HHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEc--CHHHHHHHHHh
Q 023578 206 CSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVS--SLTEVLSILEA 274 (280)
Q Consensus 206 ~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~--~~~dl~~~l~~ 274 (280)
++++|+++++|++|||+. ||+.|++.+|+.+++ + +.+..+ ..++++++ ++..++-++..
T Consensus 257 a~~lgi~~~qtIaVGDg~-NDl~m~~~AGlgiA~-n-----Akp~Vk---~~Ad~~i~~~~l~~~l~~~~~ 317 (322)
T PRK11133 257 AQEYEIPLAQTVAIGDGA-NDLPMIKAAGLGIAY-H-----AKPKVN---EQAQVTIRHADLMGVLCILSG 317 (322)
T ss_pred HHHcCCChhhEEEEECCH-HHHHHHHHCCCeEEe-C-----CCHHHH---hhCCEEecCcCHHHHHHHhcc
Confidence 999999999999999999 999999999998876 3 233343 48888887 45556555543
No 52
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.87 E-value=1.6e-20 Score=151.86 Aligned_cols=112 Identities=16% Similarity=0.222 Sum_probs=96.0
Q ss_pred HHHHHHhcCCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHc---CCc--ccceeeCCCCCCCCChHHHHHH
Q 023578 131 IADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRF---GIT--FSPALSREFRPYKPDPGPLLHI 205 (280)
Q Consensus 131 ~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~---g~~--fd~v~~~~~~~~Kp~~~~~~~~ 205 (280)
+.+.+........++||+.++|++|+++|++++|+||++...++..++.. ++. |+.++....+ .||+|+.|..+
T Consensus 83 w~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~~~fd~~~g-~KP~p~~y~~i 161 (220)
T TIGR01691 83 WRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFSGYFDTTVG-LKTEAQSYVKI 161 (220)
T ss_pred HHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhcceEEEeCcc-cCCCHHHHHHH
Confidence 55555555566789999999999999999999999999998888888775 343 6666654333 69999999999
Q ss_pred HHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCC
Q 023578 206 CSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETG 244 (280)
Q Consensus 206 ~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~ 244 (280)
++++|++|++|+||||+. .|+++|+++||.++++.+++
T Consensus 162 ~~~lgv~p~e~lfVgDs~-~Di~AA~~AG~~ti~v~r~g 199 (220)
T TIGR01691 162 AGQLGSPPREILFLSDII-NELDAARKAGLHTGQLVRPG 199 (220)
T ss_pred HHHhCcChhHEEEEeCCH-HHHHHHHHcCCEEEEEECCC
Confidence 999999999999999999 99999999999999998755
No 53
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.87 E-value=1.4e-21 Score=157.52 Aligned_cols=169 Identities=15% Similarity=0.156 Sum_probs=110.8
Q ss_pred CccEEEEeCCCcccCCCCCHHHHHHHHhCCchH-HH---HHhcCC-ChhhHHHHh-hccChhHHHHHHHHHHHHHHhcCC
Q 023578 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEY-KR---VKAENP-TGIDILHHI-ESWSPDLQRHAYQTIADFERQGLD 140 (280)
Q Consensus 67 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~g~~~~-~~---~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 140 (280)
++|+|+||+||||+|+...+... ...+|.... .. ....+. ......... ..+.... .....+.......
T Consensus 3 ~~k~viFD~DGTLid~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 77 (201)
T TIGR01491 3 MIKLIIFDLDGTLTDVMSSWEYL-HRRLETCGLAKKNAELFFSGRISYEEWARLDASLWKRRS----GRLRREEVEEIFK 77 (201)
T ss_pred cceEEEEeCCCCCcCCccHHHHH-HHHhCchHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcc----cCCCHHHHHHHHH
Confidence 47999999999999977555433 333365531 11 111111 111111110 0000000 0001111222234
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceee-CCCCCCC----------CChHHHHHHHH
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALS-REFRPYK----------PDPGPLLHICS 207 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~-~~~~~~K----------p~~~~~~~~~~ 207 (280)
...++||+.++|+.|+++|++++|+||+....++.+++.+|+. |...+. .+.+..+ +++..+..+++
T Consensus 78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 78 EISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred hCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999987 443332 2333222 33468889999
Q ss_pred hcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 208 TWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 208 ~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
++|+++++++||||+. +|+++|+++|+.++...
T Consensus 158 ~~~~~~~~~i~iGDs~-~D~~~a~~ag~~~a~~~ 190 (201)
T TIGR01491 158 ELNPSLTETVAVGDSK-NDLPMFEVADISISLGD 190 (201)
T ss_pred HhCCCHHHEEEEcCCH-hHHHHHHhcCCeEEECC
Confidence 9999999999999999 99999999999777643
No 54
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.86 E-value=3.3e-21 Score=148.76 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=90.4
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCC---------------chHHHHHHHHHcCCccccee-e-----CCCCCCCCCh
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRN---------------IKEAVDLFHNRFGITFSPAL-S-----REFRPYKPDP 199 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~---------------~~~~~~~~l~~~g~~fd~v~-~-----~~~~~~Kp~~ 199 (280)
...++||+.++|++|+++|++++|+||. ....+..+++.+|+.|+.++ | .+...+||++
T Consensus 27 ~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~~~~~~~~~KP~~ 106 (161)
T TIGR01261 27 KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFPDDNCDCRKPKI 106 (161)
T ss_pred HeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCCCCCCCCCCCCCH
Confidence 4578999999999999999999999996 34567888999999987654 4 3467889999
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcC
Q 023578 200 GPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 200 ~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~ 242 (280)
.+++.+++++|+++++++||||+. +|+++|+++|+.++++.+
T Consensus 107 ~~~~~~~~~~~~~~~e~l~IGD~~-~Di~~A~~aGi~~i~~~~ 148 (161)
T TIGR01261 107 KLLEPYLKKNLIDKARSYVIGDRE-TDMQLAENLGIRGIQYDE 148 (161)
T ss_pred HHHHHHHHHcCCCHHHeEEEeCCH-HHHHHHHHCCCeEEEECh
Confidence 999999999999999999999999 999999999999999984
No 55
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.86 E-value=7.9e-21 Score=155.08 Aligned_cols=194 Identities=15% Similarity=0.180 Sum_probs=128.8
Q ss_pred ccEEEEeCCCcccCCCCCHHHHHHHHhCCchHHHHHh----cCCChhhHH-HHhhccChhHHHHHHHHHHHHHHhcCCCc
Q 023578 68 LRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKA----ENPTGIDIL-HHIESWSPDLQRHAYQTIADFERQGLDRL 142 (280)
Q Consensus 68 ~k~iiFD~DGTL~d~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (280)
-++|+||+||||+++...+ ...++. +-+....+.. ......+.. ..+..+.....+... +.+....
T Consensus 3 ~~~vifDfDgTi~~~d~~~-~~~~~~-~~~~~~~i~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~ 73 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNII-AIMKKF-APPEWEELKDDILSQELSIQEGVGQMFQLLPSNLKEEII-------QFLLETA 73 (219)
T ss_pred CcEEEEcCCCCCCcchhhH-HHHHHh-CHHHHHHHHHHHHhCCcCHHHHHHHHHHhCCCCchHHHH-------HHHHhCC
Confidence 4689999999999888765 344444 3222222211 111222222 222223222211211 1122456
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccce------eeCC-CCCCCCChHH----------HHHH
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPA------LSRE-FRPYKPDPGP----------LLHI 205 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v------~~~~-~~~~Kp~~~~----------~~~~ 205 (280)
.++||+.++++.|+++|++++|+||+...+++.+++.+ +..+.+ ++++ ....||.|.. ...+
T Consensus 74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~ 152 (219)
T PRK09552 74 EIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL 152 (219)
T ss_pred CcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence 89999999999999999999999999999999999987 542223 3333 3456776653 3578
Q ss_pred HHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhccCC
Q 023578 206 CSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANFDL 278 (280)
Q Consensus 206 ~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~~~ 278 (280)
+++++.++++|+||||+. +|+.+|+++|+.++ .+ .......+ ...+.+.++++.|+.+.|+++.+.
T Consensus 153 l~~~~~~~~~~i~iGDs~-~Di~aa~~Ag~~~a--~~---~l~~~~~~-~~~~~~~~~~f~ei~~~l~~~~~~ 218 (219)
T PRK09552 153 IRKLSDTNDFHIVIGDSI-TDLEAAKQADKVFA--RD---FLITKCEE-LGIPYTPFETFHDVQTELKHLLEV 218 (219)
T ss_pred HHHhccCCCCEEEEeCCH-HHHHHHHHCCccee--HH---HHHHHHHH-cCCCccccCCHHHHHHHHHHHhcc
Confidence 899999999999999999 99999999999443 21 11111111 346788899999999999887654
No 56
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.86 E-value=7.7e-22 Score=155.55 Aligned_cols=86 Identities=27% Similarity=0.406 Sum_probs=78.8
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCcE
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEV 216 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~ 216 (280)
....++||+.++|+ +++|+||+....++..++++|+. |+.+++++ .+..||+|+.|+.+++++|++|++|
T Consensus 87 ~~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~ 159 (175)
T TIGR01493 87 KNLPPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRV 159 (175)
T ss_pred hcCCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHe
Confidence 35679999999998 38899999999999999999998 89888876 6889999999999999999999999
Q ss_pred EEEcCCchhhHHHHHHc
Q 023578 217 MMVGDSLKDDVACGKRA 233 (280)
Q Consensus 217 v~iGDs~~~Di~~a~~~ 233 (280)
++|||+. +|+.+|+++
T Consensus 160 l~vgD~~-~Di~~A~~~ 175 (175)
T TIGR01493 160 LMVAAHQ-WDLIGARKF 175 (175)
T ss_pred EeEecCh-hhHHHHhcC
Confidence 9999999 999999864
No 57
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.85 E-value=9.2e-21 Score=152.17 Aligned_cols=101 Identities=24% Similarity=0.338 Sum_probs=91.7
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceee-CCCCCCCCChHHHHHHHHhcCCCCCcEE
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALS-REFRPYKPDPGPLLHICSTWEVQPNEVM 217 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~-~~~~~~Kp~~~~~~~~~~~lgi~~~~~v 217 (280)
...+.+++.++++.||+.|..++++||.... .+..+..+|+. ||.++. ++.+..||+|.+|+.+++++|+.|++|+
T Consensus 111 ~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r-~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~v 189 (237)
T KOG3085|consen 111 AWKYLDGMQELLQKLRKKGTILGIISNFDDR-LRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECV 189 (237)
T ss_pred CceeccHHHHHHHHHHhCCeEEEEecCCcHH-HHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeE
Confidence 5567888899999999999999999998865 45788888987 998664 7799999999999999999999999999
Q ss_pred EEcCCchhhHHHHHHcCCcEEEEcC
Q 023578 218 MVGDSLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 218 ~iGDs~~~Di~~a~~~G~~~i~v~~ 242 (280)
+|||+..||+++|+++||.++.|.+
T Consensus 190 hIgD~l~nD~~gA~~~G~~ailv~~ 214 (237)
T KOG3085|consen 190 HIGDLLENDYEGARNLGWHAILVDN 214 (237)
T ss_pred EecCccccccHhHHHcCCEEEEEcc
Confidence 9999999999999999999999985
No 58
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.83 E-value=1.2e-19 Score=146.68 Aligned_cols=191 Identities=16% Similarity=0.196 Sum_probs=120.1
Q ss_pred ccEEEEeCCCcccCCCCCHHHHHHHHhCCchHHHHHhcCCChhhHHH-HhhccChhHHHHHHHHHHHHHHhcCCCcccCc
Q 023578 68 LRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILH-HIESWSPDLQRHAYQTIADFERQGLDRLQIMP 146 (280)
Q Consensus 68 ~k~iiFD~DGTL~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 146 (280)
+|+|+|||||||++ ..|....++. |.+................. .+..+... ....+-.........++|
T Consensus 1 ~~~v~FD~DGTL~~--~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~i~~~~~~~~~~p 71 (205)
T PRK13582 1 MEIVCLDLEGVLVP--EIWIAFAEKT-GIPELRATTRDIPDYDVLMKQRLDILDEH------GLGLADIQEVIATLDPLP 71 (205)
T ss_pred CeEEEEeCCCCChh--hHHHHHHHHc-CChHHHHHhcCCCCHHHHHHHHHHHHHHc------CCCHHHHHHHHHhCCCCC
Confidence 37899999999994 2555444444 76553221111111111111 11110000 000011122224567899
Q ss_pred CHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeC--C---CCCCCCChHHHHHHHHhcCCCCCcEEEE
Q 023578 147 GTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSR--E---FRPYKPDPGPLLHICSTWEVQPNEVMMV 219 (280)
Q Consensus 147 g~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~--~---~~~~Kp~~~~~~~~~~~lgi~~~~~v~i 219 (280)
|+.++|+.|+++ ++++|+||+....++..++++|+. |+..+.. + .+..+++|.....++++++..+++|++|
T Consensus 72 g~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~~~~v~i 150 (205)
T PRK13582 72 GAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLGYRVIAA 150 (205)
T ss_pred CHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHHHhCCeEEEE
Confidence 999999999999 999999999999999999999987 4433221 1 1122334455567777777778999999
Q ss_pred cCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCE-EEcCHHHHHHHHHhccC
Q 023578 220 GDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDF-RVSSLTEVLSILEANFD 277 (280)
Q Consensus 220 GDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~-v~~~~~dl~~~l~~~~~ 277 (280)
||+. +|+.+++++|+.+. ++ +.. ... ...+++ +++++.||.+++.+...
T Consensus 151 GDs~-~D~~~~~aa~~~v~-~~----~~~-~~~--~~~~~~~~~~~~~el~~~l~~~~~ 200 (205)
T PRK13582 151 GDSY-NDTTMLGEADAGIL-FR----PPA-NVI--AEFPQFPAVHTYDELLAAIDKASA 200 (205)
T ss_pred eCCH-HHHHHHHhCCCCEE-EC----CCH-HHH--HhCCcccccCCHHHHHHHHHHHHh
Confidence 9999 99999999998654 33 221 111 124454 89999999999887643
No 59
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.83 E-value=2.6e-20 Score=144.65 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=83.5
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCchH------------HHHHHHHHcCCcccceeeCC-CCCCCCChHHHHHHHHhcC
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIKE------------AVDLFHNRFGITFSPALSRE-FRPYKPDPGPLLHICSTWE 210 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~~------------~~~~~l~~~g~~fd~v~~~~-~~~~Kp~~~~~~~~~~~lg 210 (280)
++||+.++|+.|+++|++++|+||+... .++.+++.+|+.++.+++++ ...+||+|+++..+++++|
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~~ 122 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQSQYN 122 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCccHHHHHHHHHcC
Confidence 6899999999999999999999997753 46778899999865566554 4468999999999999999
Q ss_pred --CCCCcEEEEcCCc-------hhhHHHHHHcCCcEEE
Q 023578 211 --VQPNEVMMVGDSL-------KDDVACGKRAGAFTCL 239 (280)
Q Consensus 211 --i~~~~~v~iGDs~-------~~Di~~a~~~G~~~i~ 239 (280)
+++++++||||+. .+|+++|+++|+.+++
T Consensus 123 ~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 123 SPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred CCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 9999999999985 2599999999999865
No 60
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.83 E-value=3e-19 Score=145.52 Aligned_cols=149 Identities=14% Similarity=0.094 Sum_probs=108.0
Q ss_pred EEEEeCCCcccCCCCCHHHHHHHHhCCchHH--HHHhcCCChhhHHHHhhccChhHHHHHHHHHHHHHHhcCCCcccCcC
Q 023578 70 GVVFDMDGTLTVPVIDFPAMYRAVLGEDEYK--RVKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIMPG 147 (280)
Q Consensus 70 ~iiFD~DGTL~d~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg 147 (280)
+|+||+||||+|+.+.+ . .|.+... .++... ....+..+.........+.++
T Consensus 65 aViFDlDgTLlDSs~~~-----~-~G~~~~s~~~~~~l~--------------------g~~~w~~~~~~~~~~s~p~~~ 118 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGF-----W-RGKKTFSPGSEDYLK--------------------NQVFWEKVNNGWDEFSIPKEV 118 (237)
T ss_pred EEEEeCCCccccCcHHH-----h-CCcccCCHHHhhhhc--------------------ChHHHHHHHHhcccCCcchhH
Confidence 99999999999998877 1 3554311 011000 012223333333345567788
Q ss_pred HHHHHHHhhhCCCeEEEEeCC----chHHHHHHHHHcCCc--ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCcEEEEc
Q 023578 148 TAQLCGFLDSKKIRRGLITRN----IKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~----~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~v~iG 220 (280)
+.++|++++++|++++++||. ....++.+++.+|+. |+.+++++ ....||++. .+++++|+ ++|||
T Consensus 119 a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~---~~l~~~~i----~i~vG 191 (237)
T TIGR01672 119 ARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKT---QWIQDKNI----RIHYG 191 (237)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHH---HHHHhCCC----eEEEe
Confidence 999999999999999999998 666888899999998 78888876 445677654 45677776 79999
Q ss_pred CCchhhHHHHHHcCCcEEEEcCCCCCCccccc
Q 023578 221 DSLKDDVACGKRAGAFTCLLDETGRYSADDFT 252 (280)
Q Consensus 221 Ds~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~ 252 (280)
|+. +|+.+|+++|+.++.+.++.+......+
T Consensus 192 Ds~-~DI~aAk~AGi~~I~V~~g~~s~~~~~~ 222 (237)
T TIGR01672 192 DSD-NDITAAKEAGARGIRILRASNSTYKPLP 222 (237)
T ss_pred CCH-HHHHHHHHCCCCEEEEEecCCCCCCCcc
Confidence 999 9999999999999999875554444444
No 61
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.82 E-value=3.2e-19 Score=138.36 Aligned_cols=123 Identities=17% Similarity=0.190 Sum_probs=102.9
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCCCC-------CCCCChHHHHHHHHhcCC
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFR-------PYKPDPGPLLHICSTWEV 211 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~~~-------~~Kp~~~~~~~~~~~lgi 211 (280)
.++|.+...++|-.|+.++ .++.||+.+.++.++++++|+. |+++++.+.. ..||.+.+|+.+++..|+
T Consensus 98 ~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi 175 (244)
T KOG3109|consen 98 DLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGI 175 (244)
T ss_pred hcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCC
Confidence 3678888999999999874 8899999999999999999999 9999987622 579999999999999999
Q ss_pred C-CCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhc
Q 023578 212 Q-PNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEAN 275 (280)
Q Consensus 212 ~-~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~ 275 (280)
+ |.+++||+||. ++|+.|++.||.++++..... ..++++++.+..+..+.+.++
T Consensus 176 ~~p~~t~FfDDS~-~NI~~ak~vGl~tvlv~~~~~---------~~~~d~~l~~ih~~k~a~p~l 230 (244)
T KOG3109|consen 176 DSPRNTYFFDDSE-RNIQTAKEVGLKTVLVGREHK---------IKGVDYALEQIHNNKEALPEL 230 (244)
T ss_pred CCcCceEEEcCch-hhHHHHHhccceeEEEEeeec---------ccchHHHHHHhhchhhhchHH
Confidence 7 99999999999 999999999999999874211 136777777666655544443
No 62
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.80 E-value=4.7e-20 Score=143.21 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=88.8
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCC-chHHHHHHHHHcCCc-----------ccceeeCC-CCCCCCChHHHHHHH
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRN-IKEAVDLFHNRFGIT-----------FSPALSRE-FRPYKPDPGPLLHIC 206 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~-~~~~~~~~l~~~g~~-----------fd~v~~~~-~~~~Kp~~~~~~~~~ 206 (280)
....++||+.++|+.|+++|++++++||+ ....++..++.+|+. |+.+++++ ....||.+.+++.+.
T Consensus 42 ~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~ 121 (174)
T TIGR01685 42 TEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVN 121 (174)
T ss_pred CEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhh
Confidence 45689999999999999999999999998 888888899998863 78888865 445666677777777
Q ss_pred Hhc--CCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcC
Q 023578 207 STW--EVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 207 ~~l--gi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~ 242 (280)
+.+ |++|++|+||||+. .|+++|+++|+.++++..
T Consensus 122 ~~~~~gl~p~e~l~VgDs~-~di~aA~~aGi~~i~v~~ 158 (174)
T TIGR01685 122 KVDPSVLKPAQILFFDDRT-DNVREVWGYGVTSCYCPS 158 (174)
T ss_pred hcccCCCCHHHeEEEcChh-HhHHHHHHhCCEEEEcCC
Confidence 777 89999999999999 999999999999999974
No 63
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.79 E-value=1.5e-19 Score=139.09 Aligned_cols=112 Identities=16% Similarity=0.104 Sum_probs=91.1
Q ss_pred HHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHH
Q 023578 151 LCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACG 230 (280)
Q Consensus 151 ~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a 230 (280)
++++|+++|++++|+||.....++..++.+|+. ..+.+ .+|+++.++.+++++|+++++|+||||+. +|+.++
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~--~~~~~----~~~k~~~~~~~~~~~~~~~~~~~~vGDs~-~D~~~~ 108 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT--HLYQG----QSNKLIAFSDILEKLALAPENVAYIGDDL-IDWPVM 108 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC--EEEec----ccchHHHHHHHHHHcCCCHHHEEEECCCH-HHHHHH
Confidence 799999999999999999999999999999986 22222 37889999999999999999999999999 999999
Q ss_pred HHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHH---HHHHHHhccC
Q 023578 231 KRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTE---VLSILEANFD 277 (280)
Q Consensus 231 ~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~d---l~~~l~~~~~ 277 (280)
+++|+. +.+.+ +.... +..+++++.+..+ +.+.++.++.
T Consensus 109 ~~ag~~-~~v~~----~~~~~---~~~a~~i~~~~~~~g~~~~~~~~~~~ 150 (154)
T TIGR01670 109 EKVGLS-VAVAD----AHPLL---IPRADYVTRIAGGRGAVREVCELLLL 150 (154)
T ss_pred HHCCCe-EecCC----cCHHH---HHhCCEEecCCCCCcHHHHHHHHHHH
Confidence 999997 55542 22233 3478999987754 6666666544
No 64
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.79 E-value=2.2e-19 Score=139.19 Aligned_cols=97 Identities=22% Similarity=0.222 Sum_probs=84.1
Q ss_pred HHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHH
Q 023578 151 LCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVA 228 (280)
Q Consensus 151 ~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~ 228 (280)
.++.|+++|++++|+||.....++..++.+|+. |+. .||+|+.++.+++++|+++++|++|||+. +|+.
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~~f~~--------~kpkp~~~~~~~~~l~~~~~ev~~iGD~~-nDi~ 112 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKRFHEG--------IKKKTEPYAQMLEEMNISDAEVCYVGDDL-VDLS 112 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcEEEec--------CCCCHHHHHHHHHHcCcCHHHEEEECCCH-HHHH
Confidence 678899999999999999999999999999987 442 28999999999999999999999999999 9999
Q ss_pred HHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcC
Q 023578 229 CGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSS 264 (280)
Q Consensus 229 ~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~ 264 (280)
+++.+|+.+++-+ +..+.+ ..+++|+.+
T Consensus 113 ~~~~ag~~~am~n-----A~~~lk---~~A~~I~~~ 140 (169)
T TIGR02726 113 MMKRVGLAVAVGD-----AVADVK---EAAAYVTTA 140 (169)
T ss_pred HHHHCCCeEECcC-----chHHHH---HhCCEEcCC
Confidence 9999999888743 344444 478888764
No 65
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.78 E-value=1.1e-18 Score=130.14 Aligned_cols=96 Identities=27% Similarity=0.383 Sum_probs=88.3
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEc
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iG 220 (280)
.....|++.+.+..++++|+++.|+||+....+....+++|++| + ....||.+..|.++++++++++++|++||
T Consensus 44 ~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~f--i----~~A~KP~~~~fr~Al~~m~l~~~~vvmVG 117 (175)
T COG2179 44 NPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPF--I----YRAKKPFGRAFRRALKEMNLPPEEVVMVG 117 (175)
T ss_pred CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCce--e----ecccCccHHHHHHHHHHcCCChhHEEEEc
Confidence 44577899999999999999999999999999999999999763 3 45779999999999999999999999999
Q ss_pred CCchhhHHHHHHcCCcEEEEcC
Q 023578 221 DSLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 221 Ds~~~Di~~a~~~G~~~i~v~~ 242 (280)
|+..+|+.+++.+|+.||+|..
T Consensus 118 DqL~TDVlggnr~G~~tIlV~P 139 (175)
T COG2179 118 DQLFTDVLGGNRAGMRTILVEP 139 (175)
T ss_pred chhhhhhhcccccCcEEEEEEE
Confidence 9999999999999999999973
No 66
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.77 E-value=2e-17 Score=132.65 Aligned_cols=181 Identities=12% Similarity=0.127 Sum_probs=114.3
Q ss_pred cEEEEeCCCcccCCCCCHHHHHHHHhCCchHHHHHhcCCChhhHHH-Hhh-----ccChhHHHHHHHHHHHHHHhcCCCc
Q 023578 69 RGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILH-HIE-----SWSPDLQRHAYQTIADFERQGLDRL 142 (280)
Q Consensus 69 k~iiFD~DGTL~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (280)
++++|||||||++. .|.....+. |................... .+. +++.+.+ +......
T Consensus 2 ~la~FDlD~TLi~~--~w~~~~~~~-g~~~~~~~~~~~~~~~~~~~~r~~ll~~~g~~~~~i-----------~~~~~~i 67 (203)
T TIGR02137 2 EIACLDLEGVLVPE--IWIAFAEKT-GIDALKATTRDIPDYDVLMKQRLRILDEHGLKLGDI-----------QEVIATL 67 (203)
T ss_pred eEEEEeCCcccHHH--HHHHHHHHc-CCcHHHHHhcCCcCHHHHHHHHHHHHHHCCCCHHHH-----------HHHHHhC
Confidence 56999999999965 355444444 65442222111111111111 000 1111111 2222355
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--cc--------ceeeCCCCCCCCChHHHHHHHHhcCCC
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FS--------PALSREFRPYKPDPGPLLHICSTWEVQ 212 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd--------~v~~~~~~~~Kp~~~~~~~~~~~lgi~ 212 (280)
.++||+.++++.+++++ +++|+|++...+++.+++.+|++ |. ..+++.....++.+......+++.|.
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~~- 145 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYY- 145 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhCC-
Confidence 78999999999999985 99999999999999999999987 33 23333222334444444444455553
Q ss_pred CCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhc
Q 023578 213 PNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEAN 275 (280)
Q Consensus 213 ~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~ 275 (280)
++++|||+. ||+.+++.+|..+++... +...+ .+.---++.+..||+..+.+.
T Consensus 146 --~~v~vGDs~-nDl~ml~~Ag~~ia~~ak------~~~~~-~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T TIGR02137 146 --RVIAAGDSY-NDTTMLSEAHAGILFHAP------ENVIR-EFPQFPAVHTYEDLKREFLKA 198 (203)
T ss_pred --CEEEEeCCH-HHHHHHHhCCCCEEecCC------HHHHH-hCCCCCcccCHHHHHHHHHHH
Confidence 799999999 999999999999887442 11121 233334688999999988765
No 67
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.77 E-value=8.7e-18 Score=131.42 Aligned_cols=95 Identities=20% Similarity=0.294 Sum_probs=82.9
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCc-hHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEc
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNI-KEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~-~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iG 220 (280)
..++||+.++|+.|+++|++++++||+. ...++.+++.+|+.+. ....||+|++|..+++++|+++++++|||
T Consensus 42 ~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~------~~~~KP~p~~~~~~l~~~~~~~~~~l~IG 115 (170)
T TIGR01668 42 NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVL------PHAVKPPGCAFRRAHPEMGLTSEQVAVVG 115 (170)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEE------cCCCCCChHHHHHHHHHcCCCHHHEEEEC
Confidence 3688999999999999999999999998 5677777788876521 13469999999999999999999999999
Q ss_pred CCchhhHHHHHHcCCcEEEEcC
Q 023578 221 DSLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 221 Ds~~~Di~~a~~~G~~~i~v~~ 242 (280)
|+...|+.+|+++|+.+|++++
T Consensus 116 Ds~~~Di~aA~~aGi~~i~v~~ 137 (170)
T TIGR01668 116 DRLFTDVMGGNRNGSYTILVEP 137 (170)
T ss_pred CcchHHHHHHHHcCCeEEEEcc
Confidence 9973599999999999999985
No 68
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.77 E-value=5.9e-18 Score=127.26 Aligned_cols=100 Identities=32% Similarity=0.548 Sum_probs=89.1
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCC----------------CCChH
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPY----------------KPDPG 200 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~----------------Kp~~~ 200 (280)
....++|++.++++.|+++|++++++||+....++..++.+|+. ++.+++.+ .... ||++.
T Consensus 21 ~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (139)
T cd01427 21 EELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPD 100 (139)
T ss_pred ccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccCCCCHH
Confidence 45679999999999999999999999999999999999999985 67677644 2222 99999
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEE
Q 023578 201 PLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLL 240 (280)
Q Consensus 201 ~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v 240 (280)
.+..++++++..++++++|||+. +|+++++++|+.++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~igD~~-~d~~~~~~~g~~~i~v 139 (139)
T cd01427 101 KLLAALKLLGVDPEEVLMVGDSL-NDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHHHcCCChhhEEEeCCCH-HHHHHHHHcCCceeeC
Confidence 99999999999999999999999 9999999999998874
No 69
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.76 E-value=9.1e-18 Score=144.10 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=88.7
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCC---------------chHHHHHHHHHcCCcccce-eeC-----CCCCCCCC
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRN---------------IKEAVDLFHNRFGITFSPA-LSR-----EFRPYKPD 198 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~---------------~~~~~~~~l~~~g~~fd~v-~~~-----~~~~~Kp~ 198 (280)
....++||+.++|++|+++|++++|+||. ....+..+++.+|+.|+.+ ++. +...+||+
T Consensus 27 ~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~fd~i~i~~~~~sd~~~~rKP~ 106 (354)
T PRK05446 27 DKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIKFDEVLICPHFPEDNCSCRKPK 106 (354)
T ss_pred ccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCceeeEEEeCCcCcccCCCCCCC
Confidence 45689999999999999999999999995 2445666778888887665 442 35688999
Q ss_pred hHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcC
Q 023578 199 PGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 199 ~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~ 242 (280)
|.++..+++++++++++++||||+. +|+++|+++|+.+|+++.
T Consensus 107 p~~l~~a~~~l~v~~~~svmIGDs~-sDi~aAk~aGi~~I~v~~ 149 (354)
T PRK05446 107 TGLVEEYLAEGAIDLANSYVIGDRE-TDVQLAENMGIKGIRYAR 149 (354)
T ss_pred HHHHHHHHHHcCCCcccEEEEcCCH-HHHHHHHHCCCeEEEEEC
Confidence 9999999999999999999999999 999999999999999974
No 70
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.76 E-value=2.2e-17 Score=133.04 Aligned_cols=97 Identities=20% Similarity=0.269 Sum_probs=84.6
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---------ccceeeCC----CCCCCCChHHHHHHHHh
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---------FSPALSRE----FRPYKPDPGPLLHICST 208 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---------fd~v~~~~----~~~~Kp~~~~~~~~~~~ 208 (280)
..+.||+.++++.++++|++++|+|++....++++.+.+|++ -++++++. ...++-|...+..++++
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~ 155 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAE 155 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999988 12334443 12445677899999999
Q ss_pred cCCCCCcEEEEcCCchhhHHHHHHcCCcEEE
Q 023578 209 WEVQPNEVMMVGDSLKDDVACGKRAGAFTCL 239 (280)
Q Consensus 209 lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~ 239 (280)
+|+++++++++|||. ||+.|.+.+|...+.
T Consensus 156 ~g~~~~~~~a~gDs~-nDlpml~~ag~~ia~ 185 (212)
T COG0560 156 LGIPLEETVAYGDSA-NDLPMLEAAGLPIAV 185 (212)
T ss_pred cCCCHHHeEEEcCch-hhHHHHHhCCCCeEe
Confidence 999999999999999 999999999997665
No 71
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.75 E-value=1e-17 Score=139.57 Aligned_cols=127 Identities=17% Similarity=0.143 Sum_probs=98.5
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-C---CCCCCChHHHHHHHHhcCCCCCcEEE
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-F---RPYKPDPGPLLHICSTWEVQPNEVMM 218 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~---~~~Kp~~~~~~~~~~~lgi~~~~~v~ 218 (280)
++++.+.++.|++.+.+++++||............+|.. |+.+.+.. . ..+||+|.+|+.+++++|++|++++|
T Consensus 122 y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~~ 201 (257)
T TIGR01458 122 YQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAVM 201 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEEE
Confidence 567888899999999999999998776665555556665 55554322 1 24799999999999999999999999
Q ss_pred EcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHH
Q 023578 219 VGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSIL 272 (280)
Q Consensus 219 iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l 272 (280)
|||+..+|+.+|+++|+.+++|.++. +...+.......|+++++++.|+.++|
T Consensus 202 vGD~~~~Di~~a~~~G~~~i~v~~G~-~~~~~~~~~~~~pd~~~~sl~el~~~l 254 (257)
T TIGR01458 202 IGDDCRDDVGGAQDCGMRGIQVRTGK-YRPSDEEKINVPPDLTCDSLPHAVDLI 254 (257)
T ss_pred ECCCcHHHHHHHHHcCCeEEEECCCC-CChHHhcccCCCCCEEECCHHHHHHHH
Confidence 99995489999999999999997531 222222222468999999999998875
No 72
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.74 E-value=2.8e-17 Score=133.66 Aligned_cols=191 Identities=16% Similarity=0.199 Sum_probs=121.5
Q ss_pred EEEeCCCcccCCCCCHHHHHHHHhCCchHHHHH----hcCCChhhHHH-HhhccChhHHHHHHHHHHHHHHhcCCCcccC
Q 023578 71 VVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVK----AENPTGIDILH-HIESWSPDLQRHAYQTIADFERQGLDRLQIM 145 (280)
Q Consensus 71 iiFD~DGTL~d~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (280)
|+||+||||++... +...++.. +.+.+..+. ....+..+.+. .+..+.....+... ++.. ....++
T Consensus 2 ~~fDFDgTit~~d~-~~~~~~~~-~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~~~~~~~~~~----~~~~---~~~~l~ 72 (214)
T TIGR03333 2 IICDFDGTITNNDN-IISIMKQF-APPEWEALKDGVLSKTLSIQEGVGRMFGLLPSSLKEEIT----SFVL---ETAEIR 72 (214)
T ss_pred EEeccCCCCCcchh-HHHHHHHh-CcHHHHHHHHHHHcCCccHHHHHHHHHhhCCCchHHHHH----HHHH---hcCccc
Confidence 79999999996554 33333333 323322221 11222233332 22333222211111 1111 246799
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--c---cceeeCC-CCCCCCChHHH----------HHHHHhc
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--F---SPALSRE-FRPYKPDPGPL----------LHICSTW 209 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--f---d~v~~~~-~~~~Kp~~~~~----------~~~~~~l 209 (280)
||+.++++.|+++|++++|+|++...+++.+++.++.. + +.++.++ ....||.|..+ ..+++++
T Consensus 73 pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~l~~~ 152 (214)
T TIGR03333 73 EGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSLIRKL 152 (214)
T ss_pred ccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999887543 2 2233332 34556766654 4778888
Q ss_pred CCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhccC
Q 023578 210 EVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANFD 277 (280)
Q Consensus 210 gi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~~ 277 (280)
+..+++++||||+. +|+.+|+.+|+ +.+.+ .......+ ...+...+.++.|+.+.|+++.+
T Consensus 153 ~~~~~~~i~iGDg~-~D~~~a~~Ad~--~~ar~---~l~~~~~~-~~~~~~~~~~f~di~~~l~~~~~ 213 (214)
T TIGR03333 153 SEPNDYHIVIGDSV-TDVEAAKQSDL--CFARD---YLLNECEE-LGLNHAPFQDFYDVRKELENVKE 213 (214)
T ss_pred hhcCCcEEEEeCCH-HHHHHHHhCCe--eEehH---HHHHHHHH-cCCCccCcCCHHHHHHHHHHHhc
Confidence 88889999999999 99999999998 33332 11111111 23467778999999999987654
No 73
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.73 E-value=1.1e-16 Score=130.48 Aligned_cols=106 Identities=13% Similarity=0.051 Sum_probs=82.4
Q ss_pred cCCCcccCcCHHHHHHHhhhCCCeEEEEeCCc----hHHHHHHHHHcCC--c--ccceeeCCCCCCCCChHHHHHHHHhc
Q 023578 138 GLDRLQIMPGTAQLCGFLDSKKIRRGLITRNI----KEAVDLFHNRFGI--T--FSPALSREFRPYKPDPGPLLHICSTW 209 (280)
Q Consensus 138 ~~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~----~~~~~~~l~~~g~--~--fd~v~~~~~~~~Kp~~~~~~~~~~~l 209 (280)
......++||+.++|+.|+++|++++++||.. ....+.+++.+|+ . |+.+++++. ..||++.. .++++
T Consensus 109 ~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~-~~K~~K~~---~l~~~ 184 (237)
T PRK11009 109 WDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDK-PGQYTKTQ---WLKKK 184 (237)
T ss_pred ccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCC-CCCCCHHH---HHHhc
Confidence 34457899999999999999999999999953 4566777778999 4 677777664 35666543 55667
Q ss_pred CCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccc
Q 023578 210 EVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFT 252 (280)
Q Consensus 210 gi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~ 252 (280)
|+ ++||||+. +|+.+|+++|+.+|.+.++.+......+
T Consensus 185 ~i----~I~IGDs~-~Di~aA~~AGi~~I~v~~G~~~~~~~~~ 222 (237)
T PRK11009 185 NI----RIFYGDSD-NDITAAREAGARGIRILRAANSTYKPLP 222 (237)
T ss_pred CC----eEEEcCCH-HHHHHHHHcCCcEEEEecCCCCCCCccc
Confidence 75 89999999 9999999999999999875444443333
No 74
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.73 E-value=3.8e-17 Score=130.12 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=78.8
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCCC---------------------CCCCC
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREF---------------------RPYKP 197 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~~---------------------~~~Kp 197 (280)
...+.||+.++++.|+++|++++++||+....++..++.+|+. |+.+++++. ..+.+
T Consensus 70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 149 (188)
T TIGR01489 70 SAPIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGCC 149 (188)
T ss_pred hCCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCCC
Confidence 3689999999999999999999999999999999999999987 888886431 13345
Q ss_pred ChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcE
Q 023578 198 DPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFT 237 (280)
Q Consensus 198 ~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~ 237 (280)
|++.++.+.++. +++++||||+. +|+.+|+++++-+
T Consensus 150 K~~~~~~~~~~~---~~~~i~iGD~~-~D~~aa~~~d~~~ 185 (188)
T TIGR01489 150 KGKVIHKLSEPK---YQHIIYIGDGV-TDVCPAKLSDVVF 185 (188)
T ss_pred HHHHHHHHHhhc---CceEEEECCCc-chhchHhcCCccc
Confidence 677888877765 78999999999 9999999997644
No 75
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.72 E-value=3.7e-17 Score=121.74 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=75.5
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCC-chHHHHHHHHHcC-------Cc--ccceeeCCCCCCCCChHHHHHHHHhcC--
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRN-IKEAVDLFHNRFG-------IT--FSPALSREFRPYKPDPGPLLHICSTWE-- 210 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~-~~~~~~~~l~~~g-------~~--fd~v~~~~~~~~Kp~~~~~~~~~~~lg-- 210 (280)
.++||+.++|+.|+++|++++++||+ ....+...++.++ +. |+.+++++ .+|+|+.|..+++++|
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~---~~pkp~~~~~a~~~lg~~ 105 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGY---WLPKSPRLVEIALKLNGV 105 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcC---CCcHHHHHHHHHHHhcCC
Confidence 58999999999999999999999999 8888888888888 45 77776654 3588999999999999
Q ss_pred CCCCcEEEEcCCchhhHHHHHH
Q 023578 211 VQPNEVMMVGDSLKDDVACGKR 232 (280)
Q Consensus 211 i~~~~~v~iGDs~~~Di~~a~~ 232 (280)
+.|++|+||||+. .|++..++
T Consensus 106 ~~p~~~l~igDs~-~n~~~~~~ 126 (128)
T TIGR01681 106 LKPKSILFVDDRP-DNNEEVDY 126 (128)
T ss_pred CCcceEEEECCCH-hHHHHHHh
Confidence 9999999999999 99877654
No 76
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.71 E-value=1.4e-17 Score=131.85 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=88.0
Q ss_pred HHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHH
Q 023578 151 LCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACG 230 (280)
Q Consensus 151 ~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a 230 (280)
.++.|+++|++++|+||.....++.+++.+|+. .++. ..++++..++.+++++|+++++++||||+. +|+.++
T Consensus 56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~--~~f~----g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~-~D~~~a 128 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGRKSKLVEDRMTTLGIT--HLYQ----GQSNKLIAFSDLLEKLAIAPEQVAYIGDDL-IDWPVM 128 (183)
T ss_pred HHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCc--eeec----CCCcHHHHHHHHHHHhCCCHHHEEEECCCH-HHHHHH
Confidence 678888999999999999999999999999976 2222 135678999999999999999999999999 999999
Q ss_pred HHcCCcEEEEcCCCCCCccccccCCCCCCEEEc------CHHHHHHHHH
Q 023578 231 KRAGAFTCLLDETGRYSADDFTKSNLQPDFRVS------SLTEVLSILE 273 (280)
Q Consensus 231 ~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~------~~~dl~~~l~ 273 (280)
+++|+.++ +. .+.... +..+++++. .+.|+.++|.
T Consensus 129 ~~aG~~~~-v~----~~~~~~---~~~a~~v~~~~~g~g~~~el~~~i~ 169 (183)
T PRK09484 129 EKVGLSVA-VA----DAHPLL---LPRADYVTRIAGGRGAVREVCDLLL 169 (183)
T ss_pred HHCCCeEe-cC----ChhHHH---HHhCCEEecCCCCCCHHHHHHHHHH
Confidence 99999854 43 222222 357899996 6888887765
No 77
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.71 E-value=5.3e-16 Score=119.88 Aligned_cols=128 Identities=20% Similarity=0.250 Sum_probs=100.9
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCC---------------chHHHHHHHHHcCCcccceeeC----C--CCCCCCCh
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRN---------------IKEAVDLFHNRFGITFSPALSR----E--FRPYKPDP 199 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~---------------~~~~~~~~l~~~g~~fd~v~~~----~--~~~~Kp~~ 199 (280)
.+.+.||+.+.+..|++.|++++++||. ....+...++..|+.|+.++.+ + +..+||++
T Consensus 29 ~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~ 108 (181)
T COG0241 29 DFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKP 108 (181)
T ss_pred HhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCCh
Confidence 3468899999999999999999999991 2233556667788888887653 2 46899999
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHH
Q 023578 200 GPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILE 273 (280)
Q Consensus 200 ~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~ 273 (280)
.++..+++++++++++.++|||.. .|+++|.++|+..+.+.++.... ... +...+++..++.++..++.
T Consensus 109 gm~~~~~~~~~iD~~~s~~VGD~~-~Dlq~a~n~gi~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~ 177 (181)
T COG0241 109 GMLLSALKEYNIDLSRSYVVGDRL-TDLQAAENAGIKGVLVLTGIGVT--TDG--AGRAKWVFDSLAEFANLIK 177 (181)
T ss_pred HHHHHHHHHhCCCccceEEecCcH-HHHHHHHHCCCCceEEEcCcccc--ccc--ccccccccccHHHHHHHHH
Confidence 999999999999999999999999 99999999999988777522211 111 1266788888888884443
No 78
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.70 E-value=1.4e-16 Score=136.32 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=90.5
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---ccceeeCC--------CCCCCCChHHHHHHHHhc
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPALSRE--------FRPYKPDPGPLLHICSTW 209 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---fd~v~~~~--------~~~~Kp~~~~~~~~~~~l 209 (280)
...++||+.++++.|+++|++++++||......+..++.+++. |+.+++.+ ...+||+|..+..+++++
T Consensus 185 ~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~ 264 (300)
T PHA02530 185 EDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEK 264 (300)
T ss_pred cCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999888776 77777765 346799999999999999
Q ss_pred CC-CCCcEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 210 EV-QPNEVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 210 gi-~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
+. ++++|++|||+. +|+++|+++|+.+++|.
T Consensus 265 ~~~~~~~~~~vgD~~-~d~~~a~~~Gi~~i~v~ 296 (300)
T PHA02530 265 IAPKYDVLLAVDDRD-QVVDMWRRIGLECWQVA 296 (300)
T ss_pred hccCceEEEEEcCcH-HHHHHHHHhCCeEEEec
Confidence 98 679999999999 99999999999999996
No 79
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.69 E-value=7.5e-16 Score=127.91 Aligned_cols=74 Identities=27% Similarity=0.299 Sum_probs=60.0
Q ss_pred CCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHH
Q 023578 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEV 268 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl 268 (280)
.+||+|.+|+.+++++|++++++++|||+..+|+.+|+++|+.+++|.++. ....+.......|+++++++.|+
T Consensus 176 ~gKP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~-~~~~~~~~~~~~pd~~v~~l~~~ 249 (249)
T TIGR01457 176 IGKPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGV-TKAEEVAGLPIAPTHVVSSLAEW 249 (249)
T ss_pred cCCChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcCCC-CCHHHHhcCCCCCCEEeCChhhC
Confidence 579999999999999999999999999996479999999999999997532 22222222235799999998774
No 80
>PRK10444 UMP phosphatase; Provisional
Probab=99.69 E-value=6e-16 Score=127.98 Aligned_cols=75 Identities=25% Similarity=0.399 Sum_probs=62.6
Q ss_pred CCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHH
Q 023578 193 RPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEV 268 (280)
Q Consensus 193 ~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl 268 (280)
..+||+|.++..+++++|+++++|+||||+..+|+.+|+++|+.+++|.+ |.+...+.......|+++++|+.|+
T Consensus 171 ~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~-G~~~~~~l~~~~~~pd~~~~sl~el 245 (248)
T PRK10444 171 YVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLS-GVSTLDDIDSMPFRPSWIYPSVADI 245 (248)
T ss_pred ccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECC-CCCCHHHHhcCCCCCCEEECCHHHh
Confidence 35899999999999999999999999999975799999999999999974 2333333332246899999999997
No 81
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.68 E-value=1.1e-15 Score=123.13 Aligned_cols=97 Identities=12% Similarity=0.129 Sum_probs=82.0
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccc--------eeeCC----CCCCCCChHHHHHHHH
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSP--------ALSRE----FRPYKPDPGPLLHICS 207 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~--------v~~~~----~~~~Kp~~~~~~~~~~ 207 (280)
..++||+.++++.++++|++++|+|++....++.+++.+|++ |.. .+++. ...+++|...++.+++
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~ 165 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELLA 165 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999987 322 22222 1245667788999999
Q ss_pred hcCCCCCcEEEEcCCchhhHHHHHHcCCcEEE
Q 023578 208 TWEVQPNEVMMVGDSLKDDVACGKRAGAFTCL 239 (280)
Q Consensus 208 ~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~ 239 (280)
+.++++++|+++|||. +|+.+++.+|..++.
T Consensus 166 ~~~~~~~~~~~~gDs~-~D~~~~~~a~~~~~v 196 (202)
T TIGR01490 166 EEQIDLKDSYAYGDSI-SDLPLLSLVGHPYVV 196 (202)
T ss_pred HcCCCHHHcEeeeCCc-ccHHHHHhCCCcEEe
Confidence 9999999999999999 999999999987654
No 82
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.68 E-value=1.1e-15 Score=120.50 Aligned_cols=93 Identities=19% Similarity=0.307 Sum_probs=76.1
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccc--------eeeCC-----CCCCCCChHHHHH
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSP--------ALSRE-----FRPYKPDPGPLLH 204 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~--------v~~~~-----~~~~Kp~~~~~~~ 204 (280)
....+.||+.++++.++++|++++|+|++...+++.+++.+|+. |.. .+.+. ...+..|+..+..
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~ 149 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKE 149 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHH
Confidence 34568999999999999999999999999999999999999986 222 22221 1234556778889
Q ss_pred HHHhcCCCCCcEEEEcCCchhhHHHHHHc
Q 023578 205 ICSTWEVQPNEVMMVGDSLKDDVACGKRA 233 (280)
Q Consensus 205 ~~~~lgi~~~~~v~iGDs~~~Di~~a~~~ 233 (280)
+++++|++++++++|||+. +|+.+++.+
T Consensus 150 ~~~~~~~~~~~~~~iGDs~-~D~~~~~~a 177 (177)
T TIGR01488 150 LLEESKITLKKIIAVGDSV-NDLPMLKLA 177 (177)
T ss_pred HHHHhCCCHHHEEEEeCCH-HHHHHHhcC
Confidence 8999999999999999999 999998764
No 83
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.67 E-value=1.7e-16 Score=134.08 Aligned_cols=122 Identities=22% Similarity=0.272 Sum_probs=90.0
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHH-HHHHHcCCc--cccee---eCC-CCCCCCChHHHHHHHHhcCCCCCcEE
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVD-LFHNRFGIT--FSPAL---SRE-FRPYKPDPGPLLHICSTWEVQPNEVM 217 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~-~~l~~~g~~--fd~v~---~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~v 217 (280)
++++.++++.|+++|. ++++||....... ..+...|.. |+.+. +.+ ...+||+|.++..+++++|++|++++
T Consensus 145 y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~l 223 (279)
T TIGR01452 145 YAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTL 223 (279)
T ss_pred HHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEE
Confidence 6789999999999887 7899997754331 122333443 44443 233 44789999999999999999999999
Q ss_pred EEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccc------cCCCCCCEEEcCHHHH
Q 023578 218 MVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFT------KSNLQPDFRVSSLTEV 268 (280)
Q Consensus 218 ~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~------~~~~~~d~v~~~~~dl 268 (280)
||||+...|+++|+++|+.+++|.++ ....++.. ....+||++++++.|+
T Consensus 224 mIGD~~~tDI~~A~~aGi~si~V~~G-~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l 279 (279)
T TIGR01452 224 MVGDRLETDILFGHRCGMTTVLVLSG-VSRLEEAQEYLAAGQHDLVPDYVVESLADL 279 (279)
T ss_pred EECCChHHHHHHHHHcCCcEEEECCC-CCCHHHHHhhhcccccCCCCCEEecccccC
Confidence 99999449999999999999999752 22222222 1135799999998874
No 84
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.66 E-value=2.1e-15 Score=124.45 Aligned_cols=81 Identities=32% Similarity=0.453 Sum_probs=69.6
Q ss_pred CCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHH
Q 023578 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILE 273 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~ 273 (280)
.+||.+.+|+.+++.+|.+++++++|||+..+||.+|.++||.+++|.. |.+...+.......++|+.+|+.++...+.
T Consensus 188 ~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~T-Gv~~~~~~~~~~~~p~~v~~sl~~~~~~~~ 266 (269)
T COG0647 188 IGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLT-GVSSAEDLDRAEVKPTYVVDSLAELITALK 266 (269)
T ss_pred cCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEcc-CCCChhhhhhhccCCcchHhhHHHHHhhhh
Confidence 4799999999999999999999999999999999999999999999985 344344444335789999999999998877
Q ss_pred hc
Q 023578 274 AN 275 (280)
Q Consensus 274 ~~ 275 (280)
.+
T Consensus 267 ~~ 268 (269)
T COG0647 267 EL 268 (269)
T ss_pred cc
Confidence 64
No 85
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.66 E-value=1.2e-16 Score=122.18 Aligned_cols=93 Identities=13% Similarity=0.016 Sum_probs=82.8
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCcE
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEV 216 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~ 216 (280)
...++||+.++|++|+ ++++++|+|++...+++.+++.+++. |+.+++++ ....||+ |.++++++|.+|++|
T Consensus 43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~~ 118 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSNV 118 (148)
T ss_pred EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhcE
Confidence 4578999999999999 56999999999999999999999884 58888866 6677886 899999999999999
Q ss_pred EEEcCCchhhHHHHHHcCCcEE
Q 023578 217 MMVGDSLKDDVACGKRAGAFTC 238 (280)
Q Consensus 217 v~iGDs~~~Di~~a~~~G~~~i 238 (280)
++|||+. .|++++.++|+.+-
T Consensus 119 i~i~Ds~-~~~~aa~~ngI~i~ 139 (148)
T smart00577 119 IIIDDSP-DSWPFHPENLIPIK 139 (148)
T ss_pred EEEECCH-HHhhcCccCEEEec
Confidence 9999999 99999999988653
No 86
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.65 E-value=5.2e-16 Score=126.07 Aligned_cols=90 Identities=27% Similarity=0.410 Sum_probs=79.5
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcC
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGD 221 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGD 221 (280)
.+++|++.++|+.|++.|++++++||.....+..+.+.+|+. +.++.++.. +||.+.++..+++++++++.+|+||||
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~-~~~v~a~~~-~kP~~k~~~~~i~~l~~~~~~v~~vGD 203 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF-DSIVFARVI-GKPEPKIFLRIIKELQVKPGEVAMVGD 203 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC-SEEEEESHE-TTTHHHHHHHHHHHHTCTGGGEEEEES
T ss_pred CcchhhhhhhhhhhhccCcceeeeeccccccccccccccccc-ccccccccc-ccccchhHHHHHHHHhcCCCEEEEEcc
Confidence 367899999999999999999999999999999999999994 433333211 799999999999999999999999999
Q ss_pred CchhhHHHHHHcC
Q 023578 222 SLKDDVACGKRAG 234 (280)
Q Consensus 222 s~~~Di~~a~~~G 234 (280)
+. ||+.|+++||
T Consensus 204 g~-nD~~al~~Ag 215 (215)
T PF00702_consen 204 GV-NDAPALKAAG 215 (215)
T ss_dssp SG-GHHHHHHHSS
T ss_pred CH-HHHHHHHhCc
Confidence 99 9999999987
No 87
>PLN02645 phosphoglycolate phosphatase
Probab=99.64 E-value=1.1e-15 Score=130.86 Aligned_cols=122 Identities=18% Similarity=0.197 Sum_probs=84.7
Q ss_pred HHHhhhCCCeEEEEeCCchHH-HHHHHHHcCCc--ccceeeCC----CCCCCCChHHHHHHHHhcCCCCCcEEEEcCCch
Q 023578 152 CGFLDSKKIRRGLITRNIKEA-VDLFHNRFGIT--FSPALSRE----FRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLK 224 (280)
Q Consensus 152 l~~L~~~g~~i~ivS~~~~~~-~~~~l~~~g~~--fd~v~~~~----~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~ 224 (280)
...|++++-..+|+||..... ....+...|.. |+.+.+.. ...+||+|.+|..+++++|+++++++||||+..
T Consensus 179 ~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~ 258 (311)
T PLN02645 179 TLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGDRLD 258 (311)
T ss_pred HHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcCCcH
Confidence 344444333577777766433 12222334444 55554432 124799999999999999999999999999965
Q ss_pred hhHHHHHHcCCcEEEEcCCCCCCcccccc--CCCCCCEEEcCHHHHHHHHHh
Q 023578 225 DDVACGKRAGAFTCLLDETGRYSADDFTK--SNLQPDFRVSSLTEVLSILEA 274 (280)
Q Consensus 225 ~Di~~a~~~G~~~i~v~~~~~~~~~~~~~--~~~~~d~v~~~~~dl~~~l~~ 274 (280)
+|+.+|+++|+.+++|.++. ....+... ....|+++++++.+|.++++.
T Consensus 259 ~Di~~A~~aG~~~ilV~~G~-~~~~~~~~~~~~~~pd~~~~~~~~l~~~~~~ 309 (311)
T PLN02645 259 TDILFGQNGGCKTLLVLSGV-TSESMLLSPENKIQPDFYTSKISDFLTLKAA 309 (311)
T ss_pred HHHHHHHHcCCCEEEEcCCC-CCHHHHHhccCCCCCCEEECCHHHHHHHhhc
Confidence 89999999999999997422 22222211 135799999999999988765
No 88
>PRK11590 hypothetical protein; Provisional
Probab=99.61 E-value=4.7e-14 Score=114.41 Aligned_cols=168 Identities=13% Similarity=-0.040 Sum_probs=99.9
Q ss_pred ccEEEEeCCCcccCCCC--CHHHHH-HHHhCCch--HHHHH-hcCCChhhHHHH------------hhccChhHHHHHHH
Q 023578 68 LRGVVFDMDGTLTVPVI--DFPAMY-RAVLGEDE--YKRVK-AENPTGIDILHH------------IESWSPDLQRHAYQ 129 (280)
Q Consensus 68 ~k~iiFD~DGTL~d~~~--~~~~~~-~~~~g~~~--~~~~~-~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 129 (280)
.|+++||+||||++... .+...+ ++. |.+. ....+ ..+......... ....+.+..+...+
T Consensus 6 ~k~~iFD~DGTL~~~d~~~~~~~~~~~~~-g~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 84 (211)
T PRK11590 6 RRVVFFDLDGTLHQQDMFGSFLRYLLRRQ-PLNLLLVLPLLPVIGLGLLVKGRAARWPMSLLLWGCTFGHSEARLQALEA 84 (211)
T ss_pred ceEEEEecCCCCcccchHHHHHHHHHHhc-chhhHHHhHHHHHhccCcccchhhhhhhHHHHHHHHHcCCCHHHHHHHHH
Confidence 58999999999994332 333333 222 4432 12221 122222111111 11234444444444
Q ss_pred HHHHHHHhcCCCcccCcCHHHHH-HHhhhCCCeEEEEeCCchHHHHHHHHHcCCc-ccceeeCC---------CCCCCCC
Q 023578 130 TIADFERQGLDRLQIMPGTAQLC-GFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FSPALSRE---------FRPYKPD 198 (280)
Q Consensus 130 ~~~~~~~~~~~~~~~~pg~~~~l-~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-fd~v~~~~---------~~~~Kp~ 198 (280)
.+.+.+.. ...++||+.+.| +.+++.|++++|+||+....++.+++.+|+. .+.+++.+ .+..--.
T Consensus 85 ~f~~~~~~---~~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g 161 (211)
T PRK11590 85 DFVRWFRD---NVTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLG 161 (211)
T ss_pred HHHHHHHH---hCcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCC
Confidence 44333322 256799999999 5788899999999999999999999998852 23333322 1110001
Q ss_pred hHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 199 PGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 199 ~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
.+-...+-+.+|.+...+.+.|||. +|+.+...+|-..+ |+
T Consensus 162 ~~K~~~l~~~~~~~~~~~~aY~Ds~-~D~pmL~~a~~~~~-vn 202 (211)
T PRK11590 162 HEKVAQLERKIGTPLRLYSGYSDSK-QDNPLLYFCQHRWR-VT 202 (211)
T ss_pred hHHHHHHHHHhCCCcceEEEecCCc-ccHHHHHhCCCCEE-EC
Confidence 1222333444576778899999999 99999999997654 44
No 89
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.60 E-value=5.6e-15 Score=132.98 Aligned_cols=91 Identities=21% Similarity=0.278 Sum_probs=80.1
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCch------------HHHHHHHHHcCCcccceeeCC-CCCCCCChHHHHHHHHhcC
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIK------------EAVDLFHNRFGITFSPALSRE-FRPYKPDPGPLLHICSTWE 210 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~------------~~~~~~l~~~g~~fd~v~~~~-~~~~Kp~~~~~~~~~~~lg 210 (280)
++||+.+.|+.|++.|++++|+||... ..+..+++.+|+.|+.+++.+ ...+||+|.++..++++++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgipfdviia~~~~~~RKP~pGm~~~a~~~~~ 277 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVPFQVFIAIGAGFYRKPLTGMWDHLKEEAN 277 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCceEEEEeCCCCCCCCCCHHHHHHHHHhcC
Confidence 689999999999999999999999655 357788999999999888765 5688999999999999995
Q ss_pred ----CCCCcEEEEcCCchhhHHHHHHcCC
Q 023578 211 ----VQPNEVMMVGDSLKDDVACGKRAGA 235 (280)
Q Consensus 211 ----i~~~~~v~iGDs~~~Di~~a~~~G~ 235 (280)
+++++++||||.. .|+++++++|-
T Consensus 278 ~~~~Id~~~S~~VGDaa-gr~~~g~~ag~ 305 (526)
T TIGR01663 278 DGTEIQEDDCFFVGDAA-GRPANGKAAGK 305 (526)
T ss_pred cccCCCHHHeEEeCCcc-cchHHHHhcCC
Confidence 8999999999999 99888776664
No 90
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.57 E-value=1.9e-14 Score=121.36 Aligned_cols=123 Identities=11% Similarity=0.101 Sum_probs=81.6
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCc-----hHHHHHHHHHcCCcc--cceeeCC-CCCCCCChHHHHHHHHhcCCCCCcE
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNI-----KEAVDLFHNRFGITF--SPALSRE-FRPYKPDPGPLLHICSTWEVQPNEV 216 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~-----~~~~~~~l~~~g~~f--d~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~ 216 (280)
++++.+++..++..+..+.++++.. ....+.+.+.+++.. ...-.-+ ...+..|+.+++.+++++|++++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~ 218 (272)
T PRK10530 139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNV 218 (272)
T ss_pred eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHe
Confidence 3456666677766666666777643 223344445555431 0000012 2234456789999999999999999
Q ss_pred EEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHH--HHHHHHhcc
Q 023578 217 MMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTE--VLSILEANF 276 (280)
Q Consensus 217 v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~d--l~~~l~~~~ 276 (280)
++|||+. ||++|++.+|+.+++ +++.++.+ ..|++++.+..+ +...|++++
T Consensus 219 i~~GD~~-NDi~m~~~ag~~vam-----gna~~~lk---~~Ad~v~~~n~~dGv~~~l~~~~ 271 (272)
T PRK10530 219 VAFGDNF-NDISMLEAAGLGVAM-----GNADDAVK---ARADLVIGDNTTPSIAEFIYSHV 271 (272)
T ss_pred EEeCCCh-hhHHHHHhcCceEEe-----cCchHHHH---HhCCEEEecCCCCcHHHHHHHHh
Confidence 9999999 999999999986655 23444443 589999987766 777776653
No 91
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.56 E-value=7.6e-15 Score=111.99 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=86.7
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccce------------eeC-CC----CCCCCChHHH
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPA------------LSR-EF----RPYKPDPGPL 202 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v------------~~~-~~----~~~Kp~~~~~ 202 (280)
...++.||+.++++.|+++|.+++++|++.+.++..+...+|+++..+ +.+ +. ..+--|++.+
T Consensus 85 ~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i 164 (227)
T KOG1615|consen 85 QKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVI 164 (227)
T ss_pred CCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHH
Confidence 356789999999999999999999999999999999999999983222 111 11 1233456777
Q ss_pred HHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHH
Q 023578 203 LHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVL 269 (280)
Q Consensus 203 ~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~ 269 (280)
..+.+ |.....++||||+. +|+++..- |..+++.. +..-....+..+.+.+.+|..|.
T Consensus 165 ~~lrk--~~~~~~~~mvGDGa-tDlea~~p-a~afi~~~-----g~~~r~~vk~nak~~~~~f~~L~ 222 (227)
T KOG1615|consen 165 ALLRK--NYNYKTIVMVGDGA-TDLEAMPP-ADAFIGFG-----GNVIREGVKANAKWYVTDFYVLG 222 (227)
T ss_pred HHHHh--CCChheeEEecCCc-cccccCCc-hhhhhccC-----CceEcHhhHhccHHHHHHHHHHc
Confidence 77777 77888999999999 99998766 44444432 12222222457777776666554
No 92
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.56 E-value=1.3e-15 Score=112.29 Aligned_cols=115 Identities=19% Similarity=0.258 Sum_probs=89.1
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCC
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs 222 (280)
...+|. .++.|.+.|++++|+|+.....++...+.+|+. .++-+ .+.|...++.+++++++++++|.||||.
T Consensus 37 nv~DG~--Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~--~~~qG----~~dK~~a~~~L~~~~~l~~e~~ayiGDD 108 (170)
T COG1778 37 NVRDGH--GIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIK--HLYQG----ISDKLAAFEELLKKLNLDPEEVAYVGDD 108 (170)
T ss_pred eccCcH--HHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCc--eeeec----hHhHHHHHHHHHHHhCCCHHHhhhhcCc
Confidence 345565 688899999999999999999999999999986 22221 1456689999999999999999999999
Q ss_pred chhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEc------CHHHHHHHHHh
Q 023578 223 LKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVS------SLTEVLSILEA 274 (280)
Q Consensus 223 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~------~~~dl~~~l~~ 274 (280)
. +|+.+.+++|++++..+ +..... ..++||+. -+.|+.++|-.
T Consensus 109 ~-~Dlpvm~~vGls~a~~d-----Ah~~v~---~~a~~Vt~~~GG~GAvREv~dlil~ 157 (170)
T COG1778 109 L-VDLPVMEKVGLSVAVAD-----AHPLLK---QRADYVTSKKGGEGAVREVCDLILQ 157 (170)
T ss_pred c-ccHHHHHHcCCcccccc-----cCHHHH---HhhHhhhhccCcchHHHHHHHHHHH
Confidence 9 99999999999876532 222333 36777765 35666666543
No 93
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.56 E-value=2e-14 Score=123.68 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=80.0
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHH----cCCc--ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcE
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNR----FGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEV 216 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~----~g~~--fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~ 216 (280)
.++||+.++|+.|+++|++++|+|++....+..+++. +++. |+.+.++ .||+|+.+..+++++|+.++++
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~----~~pk~~~i~~~~~~l~i~~~~~ 106 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAEDFDARSIN----WGPKSESLRKIAKKLNLGTDSF 106 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHHHeeEEEEe----cCchHHHHHHHHHHhCCCcCcE
Confidence 4689999999999999999999999999999999998 7776 6665443 5899999999999999999999
Q ss_pred EEEcCCchhhHHHHHHcCCc
Q 023578 217 MMVGDSLKDDVACGKRAGAF 236 (280)
Q Consensus 217 v~iGDs~~~Di~~a~~~G~~ 236 (280)
+||||+. .|+.++++++-.
T Consensus 107 vfidD~~-~d~~~~~~~lp~ 125 (320)
T TIGR01686 107 LFIDDNP-AERANVKITLPV 125 (320)
T ss_pred EEECCCH-HHHHHHHHHCCC
Confidence 9999999 999999997754
No 94
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.53 E-value=9.1e-14 Score=106.59 Aligned_cols=94 Identities=27% Similarity=0.434 Sum_probs=75.1
Q ss_pred CcccCcCHHHHHHHhhhCCC--eEEEEeCCc-------hHHHHHHHHHcCCc-ccceeeCCCCCCCCChHHHHHHHHhcC
Q 023578 141 RLQIMPGTAQLCGFLDSKKI--RRGLITRNI-------KEAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICSTWE 210 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~--~i~ivS~~~-------~~~~~~~l~~~g~~-fd~v~~~~~~~~Kp~~~~~~~~~~~lg 210 (280)
...+.|.+.+.++++++.+. +++|+||+. ...++.+.+.+|+. +- ....|| ..+..+++.++
T Consensus 57 ~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~------h~~kKP--~~~~~i~~~~~ 128 (168)
T PF09419_consen 57 EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLR------HRAKKP--GCFREILKYFK 128 (168)
T ss_pred cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEE------eCCCCC--ccHHHHHHHHh
Confidence 34677888999999999876 499999973 66778888899976 22 123466 56667777775
Q ss_pred C-----CCCcEEEEcCCchhhHHHHHHcCCcEEEEcC
Q 023578 211 V-----QPNEVMMVGDSLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 211 i-----~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~ 242 (280)
. .|+|+++|||..-+|+.+|+..|+.+|++.+
T Consensus 129 ~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~ 165 (168)
T PF09419_consen 129 CQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTD 165 (168)
T ss_pred hccCCCCchhEEEEcchHHHHHHHhhccCceEEEEec
Confidence 4 5999999999999999999999999999975
No 95
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.52 E-value=5e-14 Score=94.73 Aligned_cols=73 Identities=37% Similarity=0.525 Sum_probs=62.2
Q ss_pred CCCCChHHHHHHHHhcCCCCCcEEEEcCC-chhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHH
Q 023578 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDS-LKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEV 268 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs-~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl 268 (280)
.+||+|.++..++++++++++++++|||+ . .|+++|+++|+.+|+|.++ .....+.......|++|++++.|+
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~-~Di~~a~~~G~~~ilV~tG-~~~~~~~~~~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLE-TDIEAAKAAGIDTILVLTG-VYSPEDLEKAEHKPDYVVDDLKEA 75 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTT-THHHHHHHTTSEEEEESSS-SSCCCGHHHSSSTTSEEESSGGGH
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcH-hHHHHHHHcCCcEEEECCC-CCCHHHHhccCCCCCEEECCHHhC
Confidence 57999999999999999999999999999 6 9999999999999999863 333333332347999999999986
No 96
>PTZ00445 p36-lilke protein; Provisional
Probab=99.51 E-value=6.8e-14 Score=109.53 Aligned_cols=99 Identities=17% Similarity=0.296 Sum_probs=82.1
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCch---------------HHHHHHHHHcCCc--ccceeeC------C------CC
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIK---------------EAVDLFHNRFGIT--FSPALSR------E------FR 193 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~---------------~~~~~~l~~~g~~--fd~v~~~------~------~~ 193 (280)
.+.|+...++..|++.|++++|||=+.. ++++..++.-+-+ .+.++++ + .+
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~g 154 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLG 154 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhc
Confidence 3678899999999999999999996544 3567777766655 3445432 1 25
Q ss_pred CCCCChHH--H--HHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcC
Q 023578 194 PYKPDPGP--L--LHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 194 ~~Kp~~~~--~--~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~ 242 (280)
..||+|.. | +++++++|+.|+|++||+|+. .++++|+++|+.++.+..
T Consensus 155 l~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~-~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 155 LDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDM-NNCKNALKEGYIALHVTG 206 (219)
T ss_pred ccCCCccchHHHHHHHHHHcCCCHHHeEeecCCH-HHHHHHHHCCCEEEEcCC
Confidence 78999999 8 999999999999999999999 999999999999999875
No 97
>PRK08238 hypothetical protein; Validated
Probab=99.50 E-value=8.2e-13 Score=118.56 Aligned_cols=152 Identities=12% Similarity=0.102 Sum_probs=102.6
Q ss_pred cEEEEeCCCcccCCCCCHHHHHHHHhCCchHHHHHh---cCCChhhHHHHhhccChhHHHHHHHHHHHHHHhcCCCcccC
Q 023578 69 RGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKA---ENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIM 145 (280)
Q Consensus 69 k~iiFD~DGTL~d~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (280)
+-++||+||||+.++..+.-.+..+ +..+...... ... +.. ...+........-....++.
T Consensus 11 ~pl~~DlDgTLi~td~l~e~~~~~l-~~~p~~~~~l~~~~~~-g~a--------------~lK~~~a~~~~~d~~~lp~~ 74 (479)
T PRK08238 11 LPLVVDLDGTLIRTDLLHESIFALL-RRNPLALLRLPLWLLR-GKA--------------ALKRRLARRVDLDVATLPYN 74 (479)
T ss_pred CCEEEeCCCCccccchHHHHHHHHH-HhChHHHHHHHHHHHh-cHH--------------HHHHHHHhhcCCChhhCCCC
Confidence 4699999999998777555555444 4444222211 000 000 00011111111111344578
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCC-CCCCCCChHHHHHHHHhcCCCCCcEEEEcCCch
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLK 224 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~ 224 (280)
||+.+.+++++++|++++++|++.+..++.+.+++|+ ||.+++++ ....||++.. +.+.+.++ .++++++||+.
T Consensus 75 pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl-Fd~Vigsd~~~~~kg~~K~-~~l~~~l~--~~~~~yvGDS~- 149 (479)
T PRK08238 75 EEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL-FDGVFASDGTTNLKGAAKA-AALVEAFG--ERGFDYAGNSA- 149 (479)
T ss_pred hhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC-CCEEEeCCCccccCCchHH-HHHHHHhC--ccCeeEecCCH-
Confidence 9999999999999999999999999999999999998 89999876 4455554432 33445665 35689999999
Q ss_pred hhHHHHHHcCCcEEEEcC
Q 023578 225 DDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 225 ~Di~~a~~~G~~~i~v~~ 242 (280)
+|+.+++.+| ..+.|+.
T Consensus 150 ~Dlp~~~~A~-~av~Vn~ 166 (479)
T PRK08238 150 ADLPVWAAAR-RAIVVGA 166 (479)
T ss_pred HHHHHHHhCC-CeEEECC
Confidence 9999999999 5667764
No 98
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.47 E-value=1.3e-13 Score=106.25 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=71.7
Q ss_pred ccc-CcCHHHHHHHhhhCCCeEEEEeCC----c----------hHHHHHHHHHcCCcccceeeCC-CCCCCCChHHHHHH
Q 023578 142 LQI-MPGTAQLCGFLDSKKIRRGLITRN----I----------KEAVDLFHNRFGITFSPALSRE-FRPYKPDPGPLLHI 205 (280)
Q Consensus 142 ~~~-~pg~~~~l~~L~~~g~~i~ivS~~----~----------~~~~~~~l~~~g~~fd~v~~~~-~~~~Kp~~~~~~~~ 205 (280)
..+ .|++.+.|+.|.+.|+.++|+||. . ...++.+++.+++.+..+++.. ...+||.+.+++.+
T Consensus 27 ~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~~~~a~~~d~~RKP~~GM~~~~ 106 (159)
T PF08645_consen 27 WKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQVYAAPHKDPCRKPNPGMWEFA 106 (159)
T ss_dssp GEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EEEEECGCSSTTSTTSSHHHHHH
T ss_pred hhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceEEEecCCCCCCCCCchhHHHHH
Confidence 344 458999999999999999999983 1 1235566778888755455544 57999999999999
Q ss_pred HHhcCC----CCCcEEEEcCC-----------chhhHHHHHHcCCcEE
Q 023578 206 CSTWEV----QPNEVMMVGDS-----------LKDDVACGKRAGAFTC 238 (280)
Q Consensus 206 ~~~lgi----~~~~~v~iGDs-----------~~~Di~~a~~~G~~~i 238 (280)
++.++. +.++++||||. . .|..-|.++|+.+.
T Consensus 107 ~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~-~D~~fA~N~gi~f~ 153 (159)
T PF08645_consen 107 LKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSD-SDRKFALNCGIKFY 153 (159)
T ss_dssp CCCTSTT--S-CCC-EEEESSCHCTB-S--S---HHHHHHHHHT--EE
T ss_pred HHhccccccccccceEEEeccCCCCCcccccCh-hHHHHHHHcCCccc
Confidence 999974 89999999996 5 79999999999754
No 99
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.47 E-value=4.5e-13 Score=110.18 Aligned_cols=105 Identities=18% Similarity=0.162 Sum_probs=75.0
Q ss_pred EEEEeCCchHHHHHHHHHcCCcccceee---CC-CCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcE
Q 023578 162 RGLITRNIKEAVDLFHNRFGITFSPALS---RE-FRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFT 237 (280)
Q Consensus 162 i~ivS~~~~~~~~~~l~~~g~~fd~v~~---~~-~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~ 237 (280)
+.+.++.....+...++.++..+..+.+ .+ ...+..|+.+++.+++++|++++++++|||+. ||++|++.+|+.+
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~-NDi~m~~~ag~~v 196 (230)
T PRK01158 118 VALRRTVPVEEVRELLEELGLDLEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDSE-NDLEMFEVAGFGV 196 (230)
T ss_pred eeecccccHHHHHHHHHHcCCcEEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHHEEEECCch-hhHHHHHhcCceE
Confidence 3444554555566677776644322222 13 33566788999999999999999999999999 9999999999987
Q ss_pred EEEcCCCCCCccccccCCCCCCEEEcCHHH--HHHHHHhc
Q 023578 238 CLLDETGRYSADDFTKSNLQPDFRVSSLTE--VLSILEAN 275 (280)
Q Consensus 238 i~v~~~~~~~~~~~~~~~~~~d~v~~~~~d--l~~~l~~~ 275 (280)
++- ++.++.+ ..+++++.+..+ +.+.|+++
T Consensus 197 am~-----Na~~~vk---~~a~~v~~~n~~~Gv~~~l~~~ 228 (230)
T PRK01158 197 AVA-----NADEELK---EAADYVTEKSYGEGVAEAIEHL 228 (230)
T ss_pred Eec-----CccHHHH---HhcceEecCCCcChHHHHHHHH
Confidence 763 4444554 478999987655 66666654
No 100
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.47 E-value=1.8e-12 Score=100.21 Aligned_cols=80 Identities=25% Similarity=0.451 Sum_probs=69.9
Q ss_pred CCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHH
Q 023578 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILE 273 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~ 273 (280)
.+||.+..|+.+++.+|++|+++|||||....|+..|.++||+.|.|.. |.|...+.......|+.++++|.|..++|-
T Consensus 179 vGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkT-GK~rpsDe~k~~~~p~~~~d~f~~AVd~I~ 257 (262)
T KOG3040|consen 179 VGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKT-GKFRPSDEEKPPVPPDLTADNFADAVDLII 257 (262)
T ss_pred ecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeec-cccCCcccccCCCCcchhhhhHHHHHHHHH
Confidence 7899999999999999999999999999997799999999999999986 456554444446899999999999888875
Q ss_pred h
Q 023578 274 A 274 (280)
Q Consensus 274 ~ 274 (280)
+
T Consensus 258 q 258 (262)
T KOG3040|consen 258 Q 258 (262)
T ss_pred h
Confidence 4
No 101
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.46 E-value=5e-12 Score=95.66 Aligned_cols=120 Identities=16% Similarity=0.182 Sum_probs=96.3
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc-----ccceeeCCCCCCCCChHHHHHHHHhcCCCCC
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-----FSPALSREFRPYKPDPGPLLHICSTWEVQPN 214 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-----fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~ 214 (280)
-...++|++.+.|++.++.|++++|.|+++...++..+..-... |++.+....+ .|-....|.++++..|++|.
T Consensus 100 lkahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDttiG-~KrE~~SY~kIa~~iGl~p~ 178 (229)
T COG4229 100 LKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDTTIG-KKRESQSYAKIAGDIGLPPA 178 (229)
T ss_pred cccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeecccc-ccccchhHHHHHHhcCCCch
Confidence 45678999999999999999999999999988877766443222 6666555444 36667899999999999999
Q ss_pred cEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHH
Q 023578 215 EVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLT 266 (280)
Q Consensus 215 ~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~ 266 (280)
+++|+-|.+ ..+.+|+.+|+.++++.++|+.... ......++.|+.
T Consensus 179 eilFLSDn~-~EL~AA~~vGl~t~l~~R~g~~P~~-----d~~~~~~~~sf~ 224 (229)
T COG4229 179 EILFLSDNP-EELKAAAGVGLATGLAVRPGNAPVP-----DGQGFLVYKSFE 224 (229)
T ss_pred heEEecCCH-HHHHHHHhcchheeeeecCCCCCCC-----CCcCceeeechh
Confidence 999999999 9999999999999999987654332 234556677766
No 102
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.45 E-value=9.8e-13 Score=110.82 Aligned_cols=73 Identities=21% Similarity=0.234 Sum_probs=59.1
Q ss_pred CCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHH--HHHHH
Q 023578 195 YKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTE--VLSIL 272 (280)
Q Consensus 195 ~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~d--l~~~l 272 (280)
+-.|..+++.+++++|++++++++|||+. ||++|.+.+|..+++ +++.++.++ .|++|+.+.++ +...|
T Consensus 194 gvsKg~al~~l~~~~gi~~~~v~afGD~~-NDi~Ml~~ag~~vAm-----~NA~~~vK~---~A~~vt~~n~~dGva~~i 264 (270)
T PRK10513 194 RVNKGTGVKSLAEHLGIKPEEVMAIGDQE-NDIAMIEYAGVGVAM-----GNAIPSVKE---VAQFVTKSNLEDGVAFAI 264 (270)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEECCch-hhHHHHHhCCceEEe-----cCccHHHHH---hcCeeccCCCcchHHHHH
Confidence 34466788999999999999999999999 999999999998887 345555554 89999987655 66666
Q ss_pred Hhcc
Q 023578 273 EANF 276 (280)
Q Consensus 273 ~~~~ 276 (280)
++++
T Consensus 265 ~~~~ 268 (270)
T PRK10513 265 EKYV 268 (270)
T ss_pred HHHh
Confidence 6653
No 103
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.45 E-value=1.1e-12 Score=104.73 Aligned_cols=84 Identities=19% Similarity=0.364 Sum_probs=65.3
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCC---C--------CCC---CChHHHHHH---HHh
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREF---R--------PYK---PDPGPLLHI---CST 208 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~---~--------~~K---p~~~~~~~~---~~~ 208 (280)
|++.++++.++++|++++|+|++....++.+++.+|++.+.+++.+. + .+. .|...++.+ ...
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~ 171 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRDEE 171 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHhhc
Confidence 45559999999999999999999999999999999987444554332 0 000 155666666 444
Q ss_pred cCCCCCcEEEEcCCchhhHHHHH
Q 023578 209 WEVQPNEVMMVGDSLKDDVACGK 231 (280)
Q Consensus 209 lgi~~~~~v~iGDs~~~Di~~a~ 231 (280)
+.....+++||||. +|+.+++
T Consensus 172 -~~~~~~~~~iGDs~-~D~~~lr 192 (192)
T PF12710_consen 172 -DIDPDRVIAIGDSI-NDLPMLR 192 (192)
T ss_dssp -THTCCEEEEEESSG-GGHHHHH
T ss_pred -CCCCCeEEEEECCH-HHHHHhC
Confidence 78899999999999 9999875
No 104
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.42 E-value=1.3e-11 Score=99.78 Aligned_cols=119 Identities=11% Similarity=-0.068 Sum_probs=78.7
Q ss_pred hhccChhHHHHHHHHHHHHHHhcCCCcccCcCHHHHHH-HhhhCCCeEEEEeCCchHHHHHHHHHcCCc-ccceeeCCCC
Q 023578 116 IESWSPDLQRHAYQTIADFERQGLDRLQIMPGTAQLCG-FLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FSPALSREFR 193 (280)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~l~-~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-fd~v~~~~~~ 193 (280)
+.+.+.+..++..+.+.+.+. ....++||+.+.|+ .++++|++++|+||+....++.+.+..++. .+.+++.+..
T Consensus 70 ~~g~~~~~l~~~~~~f~~~~~---~~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~~i~t~le 146 (210)
T TIGR01545 70 TFGHREAHLQDLEADFVAAFR---DKVTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLNLIASQIE 146 (210)
T ss_pred HcCCCHHHHHHHHHHHHHHHH---HhCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCcEEEEEeE
Confidence 345565555555444433222 23468999999996 788899999999999999999999886552 2344443210
Q ss_pred --C-CC---C---ChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEE
Q 023578 194 --P-YK---P---DPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTC 238 (280)
Q Consensus 194 --~-~K---p---~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i 238 (280)
. ++ + ..+-...+.+.+|.+...+.+.|||. +|+.+...+|-..+
T Consensus 147 ~~~gg~~~g~~c~g~~Kv~rl~~~~~~~~~~~~aYsDS~-~D~pmL~~a~~~~~ 199 (210)
T TIGR01545 147 RGNGGWVLPLRCLGHEKVAQLEQKIGSPLKLYSGYSDSK-QDNPLLAFCEHRWR 199 (210)
T ss_pred EeCCceEcCccCCChHHHHHHHHHhCCChhheEEecCCc-ccHHHHHhCCCcEE
Confidence 0 11 1 11222233344565667889999999 99999999998654
No 105
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.42 E-value=1.8e-12 Score=109.30 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=57.6
Q ss_pred CChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCE--EEcCHHH--HHHHH
Q 023578 197 PDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDF--RVSSLTE--VLSIL 272 (280)
Q Consensus 197 p~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~--v~~~~~d--l~~~l 272 (280)
.|..+++.+++++|++++++++|||+. ||++|.+.+|..+++ +++.++.++ .+++ ++.+.++ +...|
T Consensus 188 sKg~al~~l~~~~gi~~~~v~afGD~~-NDi~Ml~~ag~~vAm-----~Na~~~vK~---~A~~~~v~~~n~edGva~~l 258 (272)
T PRK15126 188 NKGAALAVLSQHLGLSLADCMAFGDAM-NDREMLGSVGRGFIM-----GNAMPQLRA---ELPHLPVIGHCRNQAVSHYL 258 (272)
T ss_pred ChHHHHHHHHHHhCCCHHHeEEecCCH-HHHHHHHHcCCceec-----cCChHHHHH---hCCCCeecCCCcchHHHHHH
Confidence 467789999999999999999999999 999999999998877 345555554 5554 6766554 77778
Q ss_pred HhccC
Q 023578 273 EANFD 277 (280)
Q Consensus 273 ~~~~~ 277 (280)
++++.
T Consensus 259 ~~~~~ 263 (272)
T PRK15126 259 THWLD 263 (272)
T ss_pred HHHhc
Confidence 77765
No 106
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.42 E-value=2.2e-12 Score=104.60 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=80.2
Q ss_pred CCcccCcCHHHHHHHh--hhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-----CC----------------C
Q 023578 140 DRLQIMPGTAQLCGFL--DSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-----FR----------------P 194 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L--~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-----~~----------------~ 194 (280)
..+++.||+.++++.+ ++.|+.++|+|+++..+++.+++..|+. |+.|++.- .+ .
T Consensus 68 ~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~ 147 (234)
T PF06888_consen 68 RSIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPP 147 (234)
T ss_pred HcCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCC
Confidence 5778999999999999 4579999999999999999999999998 77776531 11 1
Q ss_pred CCCChHHHHHHHHh---cCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcC
Q 023578 195 YKPDPGPLLHICST---WEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 195 ~Kp~~~~~~~~~~~---lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~ 242 (280)
..-|...++..++. -|+..++++||||+. ||+-++...+-.-+...+
T Consensus 148 NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~-nD~Cp~~~L~~~D~v~~R 197 (234)
T PF06888_consen 148 NMCKGKILERLLQEQAQRGVPYDRVIYIGDGR-NDFCPALRLRPRDVVFPR 197 (234)
T ss_pred ccchHHHHHHHHHHHhhcCCCcceEEEECCCC-CCcCcccccCCCCEEecC
Confidence 11245566666665 377889999999999 999999988776555554
No 107
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.41 E-value=1.5e-12 Score=105.93 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=51.8
Q ss_pred CCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHH
Q 023578 195 YKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLT 266 (280)
Q Consensus 195 ~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~ 266 (280)
+..|..+++.+++++|++++++++|||+. ||++|++.+|+.+++- ++.++.++ .+++++.+..
T Consensus 145 ~~~K~~~i~~l~~~~~i~~~~~i~iGDs~-ND~~ml~~ag~~vam~-----na~~~~k~---~A~~v~~~~~ 207 (215)
T TIGR01487 145 GVDKGVGVEKLKELLGIKPEEVAAIGDSE-NDIDLFRVVGFKVAVA-----NADDQLKE---IADYVTSNPY 207 (215)
T ss_pred CCChHHHHHHHHHHhCCCHHHEEEECCCH-HHHHHHHhCCCeEEcC-----CccHHHHH---hCCEEcCCCC
Confidence 44567799999999999999999999999 9999999999988773 44445554 7889887543
No 108
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.40 E-value=1.4e-11 Score=102.10 Aligned_cols=93 Identities=13% Similarity=0.185 Sum_probs=78.1
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceee------CC-CCCCCCCh---------HH
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALS------RE-FRPYKPDP---------GP 201 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~------~~-~~~~Kp~~---------~~ 201 (280)
....+.||+.++++.|+++|++++|+|++....++.+++.+|+. +..+++ .+ ...++|.| ..
T Consensus 118 ~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v 197 (277)
T TIGR01544 118 SDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDV 197 (277)
T ss_pred cCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHH
Confidence 36789999999999999999999999999999999999999985 444532 22 22456666 66
Q ss_pred HHHHHHhcC--CCCCcEEEEcCCchhhHHHHHHc
Q 023578 202 LLHICSTWE--VQPNEVMMVGDSLKDDVACGKRA 233 (280)
Q Consensus 202 ~~~~~~~lg--i~~~~~v~iGDs~~~Di~~a~~~ 233 (280)
++.+++.++ .++++|++|||+. +|+.||..+
T Consensus 198 ~~~~~~~~~~~~~~~~vI~vGDs~-~Dl~ma~g~ 230 (277)
T TIGR01544 198 ALRNTEYFNQLKDRSNIILLGDSQ-GDLRMADGV 230 (277)
T ss_pred HHHHHHHhCccCCcceEEEECcCh-hhhhHhcCC
Confidence 777889998 7999999999999 999997766
No 109
>PRK10976 putative hydrolase; Provisional
Probab=99.39 E-value=4.6e-12 Score=106.53 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=57.3
Q ss_pred CCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCC--EEEcCHHH--HHHH
Q 023578 196 KPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPD--FRVSSLTE--VLSI 271 (280)
Q Consensus 196 Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d--~v~~~~~d--l~~~ 271 (280)
-.|..+++.+++++|++++++++|||+. ||++|.+.+|..+++ +++.++.++ .++ +|+.+.+| +...
T Consensus 189 vsKg~al~~l~~~lgi~~~~viafGD~~-NDi~Ml~~ag~~vAm-----~NA~~~vK~---~A~~~~v~~~n~edGVa~~ 259 (266)
T PRK10976 189 VSKGHALEAVAKKLGYSLKDCIAFGDGM-NDAEMLSMAGKGCIM-----GNAHQRLKD---LLPELEVIGSNADDAVPHY 259 (266)
T ss_pred CChHHHHHHHHHHcCCCHHHeEEEcCCc-ccHHHHHHcCCCeee-----cCCcHHHHH---hCCCCeecccCchHHHHHH
Confidence 3467789999999999999999999999 999999999998887 345555554 554 77877655 7777
Q ss_pred HHhcc
Q 023578 272 LEANF 276 (280)
Q Consensus 272 l~~~~ 276 (280)
|++++
T Consensus 260 l~~~~ 264 (266)
T PRK10976 260 LRKLY 264 (266)
T ss_pred HHHHh
Confidence 76653
No 110
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.38 E-value=2.3e-13 Score=111.47 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=74.8
Q ss_pred eEEEEeCCchHHHHHHHHHcCCcccce---eeCC-CCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCc
Q 023578 161 RRGLITRNIKEAVDLFHNRFGITFSPA---LSRE-FRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAF 236 (280)
Q Consensus 161 ~i~ivS~~~~~~~~~~l~~~g~~fd~v---~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~ 236 (280)
...+.+..........++.++..+... ...+ ...+.+|..+++.+++++|++++++++|||+. ||+.|++.+|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~-NDi~m~~~ag~~ 187 (225)
T TIGR01482 109 LVKMRYGIDVDTVREIIKELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSE-NDIDLFEVPGFG 187 (225)
T ss_pred eEEEeecCCHHHHHHHHHhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCH-hhHHHHHhcCce
Confidence 344555555566677777777542211 1123 33567788999999999999999999999999 999999999998
Q ss_pred EEEEcCCCCCCccccccCCCCCCEEEcCHHH------HHHHHHh
Q 023578 237 TCLLDETGRYSADDFTKSNLQPDFRVSSLTE------VLSILEA 274 (280)
Q Consensus 237 ~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~d------l~~~l~~ 274 (280)
+++ .++.++.+ ..+++|+.+..+ +...|++
T Consensus 188 vam-----~Na~~~~k---~~A~~vt~~~~~~G~~~~v~~~l~~ 223 (225)
T TIGR01482 188 VAV-----ANAQPELK---EWADYVTESPYGEGGAEAIGEILQA 223 (225)
T ss_pred EEc-----CChhHHHH---HhcCeecCCCCCCcHHHHHHHHHHh
Confidence 777 34554554 488999876554 5555544
No 111
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.37 E-value=6.2e-11 Score=102.10 Aligned_cols=77 Identities=21% Similarity=0.320 Sum_probs=62.1
Q ss_pred CCCCChHHHHHHHHhc--------CC-----CCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCE
Q 023578 194 PYKPDPGPLLHICSTW--------EV-----QPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDF 260 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~~l--------gi-----~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~ 260 (280)
.+||++.+|+.+++.+ ++ ++++++||||+..+|+.+|+++||.+++|.. |.+...+.. ....|++
T Consensus 231 ~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~t-G~~~~~~~~-~~~~p~~ 308 (321)
T TIGR01456 231 LGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKT-GVYNGGDDL-KECKPTL 308 (321)
T ss_pred cCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecc-cccCCCCCC-CCCCCCE
Confidence 5999999999988887 43 4579999999998999999999999999975 333333322 1357999
Q ss_pred EEcCHHHHHHHH
Q 023578 261 RVSSLTEVLSIL 272 (280)
Q Consensus 261 v~~~~~dl~~~l 272 (280)
+++|+.|+...|
T Consensus 309 vv~~l~e~~~~i 320 (321)
T TIGR01456 309 IVNDVFDAVTKI 320 (321)
T ss_pred EECCHHHHHHHh
Confidence 999999998875
No 112
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.37 E-value=6.2e-12 Score=105.59 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=57.2
Q ss_pred CCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHH--HHHHHH
Q 023578 196 KPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTE--VLSILE 273 (280)
Q Consensus 196 Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~d--l~~~l~ 273 (280)
..|..+++.+++++|++++++++|||+. ||++|.+.+|..+++- ++.++.++ .+++++.+..+ +...|+
T Consensus 188 ~~K~~al~~l~~~lgi~~~~v~afGD~~-ND~~Ml~~ag~gvam~-----Na~~~~k~---~A~~vt~~n~~~Gv~~~l~ 258 (264)
T COG0561 188 VSKGYALQRLAKLLGIKLEEVIAFGDST-NDIEMLEVAGLGVAMG-----NADEELKE---LADYVTTSNDEDGVAEALE 258 (264)
T ss_pred CchHHHHHHHHHHhCCCHHHeEEeCCcc-ccHHHHHhcCeeeecc-----CCCHHHHh---hCCcccCCccchHHHHHHH
Confidence 3466788999999999999999999999 9999999999988873 44444443 67777676655 777777
Q ss_pred hccC
Q 023578 274 ANFD 277 (280)
Q Consensus 274 ~~~~ 277 (280)
+++.
T Consensus 259 ~~~~ 262 (264)
T COG0561 259 KLLL 262 (264)
T ss_pred HHhc
Confidence 6643
No 113
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.37 E-value=9.5e-13 Score=101.42 Aligned_cols=101 Identities=11% Similarity=0.204 Sum_probs=70.2
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeC-CchHHHHHHHHHcCCc-c--c-----ceee-CCCCCCCCChHHHHHHHHhc
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITR-NIKEAVDLFHNRFGIT-F--S-----PALS-REFRPYKPDPGPLLHICSTW 209 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~-~~~~~~~~~l~~~g~~-f--d-----~v~~-~~~~~~Kp~~~~~~~~~~~l 209 (280)
..+.++|++.++|+.|+++|++++++|- ...+.++.+++.+++. - . .++. -+... -.|..-|+.+.++.
T Consensus 42 ~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~-gsK~~Hf~~i~~~t 120 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYP-GSKTTHFRRIHRKT 120 (169)
T ss_dssp -EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESS-S-HHHHHHHHHHHH
T ss_pred CEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheec-CchHHHHHHHHHhc
Confidence 4678999999999999999999999994 5567899999999876 0 0 1111 12222 36778999999999
Q ss_pred CCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcC
Q 023578 210 EVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 210 gi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~ 242 (280)
|++.++++||+|.. .++...+..|+.++.+.+
T Consensus 121 gI~y~eMlFFDDe~-~N~~~v~~lGV~~v~v~~ 152 (169)
T PF12689_consen 121 GIPYEEMLFFDDES-RNIEVVSKLGVTCVLVPD 152 (169)
T ss_dssp ---GGGEEEEES-H-HHHHHHHTTT-EEEE-SS
T ss_pred CCChhHEEEecCch-hcceeeEecCcEEEEeCC
Confidence 99999999999999 999999999999999985
No 114
>PLN02887 hydrolase family protein
Probab=99.35 E-value=8.2e-12 Score=114.21 Aligned_cols=70 Identities=20% Similarity=0.188 Sum_probs=56.8
Q ss_pred CChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHH--HHHHHHh
Q 023578 197 PDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTE--VLSILEA 274 (280)
Q Consensus 197 p~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~d--l~~~l~~ 274 (280)
.|..+++.+++++|++++++++|||+. ||++|.+.+|..+++ +++.++.++ .|++|+.+.++ +...|++
T Consensus 507 SKG~ALk~L~e~lGI~~eeviAFGDs~-NDIeMLe~AG~gVAM-----gNA~eeVK~---~Ad~VT~sNdEDGVA~aLek 577 (580)
T PLN02887 507 SKGNGVKMLLNHLGVSPDEIMAIGDGE-NDIEMLQLASLGVAL-----SNGAEKTKA---VADVIGVSNDEDGVADAIYR 577 (580)
T ss_pred CHHHHHHHHHHHcCCCHHHEEEEecch-hhHHHHHHCCCEEEe-----CCCCHHHHH---hCCEEeCCCCcCHHHHHHHH
Confidence 455678889999999999999999999 999999999998887 345555554 89999987665 6666655
Q ss_pred c
Q 023578 275 N 275 (280)
Q Consensus 275 ~ 275 (280)
+
T Consensus 578 ~ 578 (580)
T PLN02887 578 Y 578 (580)
T ss_pred h
Confidence 4
No 115
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.31 E-value=6.4e-12 Score=104.09 Aligned_cols=89 Identities=10% Similarity=0.082 Sum_probs=72.2
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCchHHHH--HHHHHcCCc---ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcE
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVD--LFHNRFGIT---FSPALSREFRPYKPDPGPLLHICSTWEVQPNEV 216 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~--~~l~~~g~~---fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~ 216 (280)
..++||+.++|++|+++|++++++||+.+...+ ..++.+|+. |+.+++++... ...+..+++++|++++++
T Consensus 23 ~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~----~~~l~~~~~~~~~~~~~~ 98 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSGEIA----VQMILESKKRFDIRNGII 98 (242)
T ss_pred CccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccHHHH----HHHHHhhhhhccCCCceE
Confidence 357999999999999999999999998887665 678999986 57777755221 146777778889999999
Q ss_pred EEEcCCchhhHHHHHHcCC
Q 023578 217 MMVGDSLKDDVACGKRAGA 235 (280)
Q Consensus 217 v~iGDs~~~Di~~a~~~G~ 235 (280)
++|||+. .|++....+|.
T Consensus 99 ~~vGd~~-~d~~~~~~~~~ 116 (242)
T TIGR01459 99 YLLGHLE-NDIINLMQCYT 116 (242)
T ss_pred EEeCCcc-cchhhhcCCCc
Confidence 9999999 89988765554
No 116
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.30 E-value=3e-11 Score=100.14 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=67.2
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchH---HHHHHHHHcCCc---ccceeeCCCCCCCCChHHHHHHHHhcCCCC
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKE---AVDLFHNRFGIT---FSPALSREFRPYKPDPGPLLHICSTWEVQP 213 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~---~~~~~l~~~g~~---fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~ 213 (280)
....++||+.++++.|+++|++++++||+... .....++.+|+. ++.++..+.. ++|+...+.+.+.+++
T Consensus 115 ~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~--~~K~~rr~~I~~~y~I-- 190 (266)
T TIGR01533 115 AQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKKDK--SSKESRRQKVQKDYEI-- 190 (266)
T ss_pred CCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCCCC--CCcHHHHHHHHhcCCE--
Confidence 35678999999999999999999999997643 445777889987 4566665433 5667888888887777
Q ss_pred CcEEEEcCCchhhHHHH
Q 023578 214 NEVMMVGDSLKDDVACG 230 (280)
Q Consensus 214 ~~~v~iGDs~~~Di~~a 230 (280)
+++|||+. +|+..+
T Consensus 191 --vl~vGD~~-~Df~~~ 204 (266)
T TIGR01533 191 --VLLFGDNL-LDFDDF 204 (266)
T ss_pred --EEEECCCH-HHhhhh
Confidence 89999999 999654
No 117
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=99.27 E-value=3e-11 Score=99.13 Aligned_cols=79 Identities=27% Similarity=0.425 Sum_probs=65.5
Q ss_pred CCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccc----cCCCCCCEEEcCHHHHH
Q 023578 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFT----KSNLQPDFRVSSLTEVL 269 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~----~~~~~~d~v~~~~~dl~ 269 (280)
.+||.+.+++.+.++++++|++++||||+..+||.-++++|++++++-.+.. ..++.. +....|||+++++.++.
T Consensus 222 ~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~-~led~~~~~~~~~~~PDyy~~~l~d~~ 300 (306)
T KOG2882|consen 222 LGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVT-TLEDILEAQGDNKMVPDYYADSLGDLL 300 (306)
T ss_pred cCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcC-cHHHHHhcccccCCCCchHHhhHHHHh
Confidence 6899999999999999999999999999998999999999999999986332 222211 12457999999999988
Q ss_pred HHHH
Q 023578 270 SILE 273 (280)
Q Consensus 270 ~~l~ 273 (280)
+.++
T Consensus 301 ~~~~ 304 (306)
T KOG2882|consen 301 PLLN 304 (306)
T ss_pred hhcc
Confidence 7664
No 118
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=3.8e-11 Score=91.08 Aligned_cols=127 Identities=10% Similarity=0.152 Sum_probs=88.8
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcC----Cc-ccce---------------eeCCCCCCCCCh
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFG----IT-FSPA---------------LSREFRPYKPDP 199 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g----~~-fd~v---------------~~~~~~~~Kp~~ 199 (280)
....+.||..++++++++++++++++|+|...++..+++.++ +. .+.+ ...+...+..++
T Consensus 70 k~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~ 149 (220)
T COG4359 70 KDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKS 149 (220)
T ss_pred hhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcc
Confidence 457899999999999999999999999999999999998887 22 1111 111222333333
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhccC
Q 023578 200 GPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANFD 277 (280)
Q Consensus 200 ~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~~ 277 (280)
. ....+.-.++.++|.||+. .|+++|+....-++- ..--...++ +..+..-.+++.|+...+++.+.
T Consensus 150 ~----vI~~l~e~~e~~fy~GDsv-sDlsaaklsDllFAK-----~~L~nyc~e-qn~~f~~fe~F~eIlk~iekvl~ 216 (220)
T COG4359 150 S----VIHELSEPNESIFYCGDSV-SDLSAAKLSDLLFAK-----DDLLNYCRE-QNLNFLEFETFYEILKEIEKVLE 216 (220)
T ss_pred h----hHHHhhcCCceEEEecCCc-ccccHhhhhhhHhhH-----HHHHHHHHH-cCCCCcccccHHHHHHHHHHHHh
Confidence 3 4445555677799999999 999999988875442 111111111 45667778888888888877654
No 119
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.25 E-value=2.9e-12 Score=99.24 Aligned_cols=96 Identities=11% Similarity=-0.026 Sum_probs=81.7
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCcE
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEV 216 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~ 216 (280)
.+...||+.++|++|++. +.++|.|++...+++.+++.++.. |+.+++.+ ....+++ +.+.++.+|.+++++
T Consensus 40 ~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~v 115 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSKV 115 (162)
T ss_pred EEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhhE
Confidence 456899999999999988 999999999999999999999865 67777765 3344554 677788899999999
Q ss_pred EEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 217 MMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 217 v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
++|||++ .++.++.+.|+.+..+.
T Consensus 116 IiVDD~~-~~~~~~~~NgI~i~~f~ 139 (162)
T TIGR02251 116 IIIDNSP-YSYSLQPDNAIPIKSWF 139 (162)
T ss_pred EEEeCCh-hhhccCccCEeecCCCC
Confidence 9999999 99999999998876644
No 120
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.24 E-value=4.3e-10 Score=94.88 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=70.3
Q ss_pred HhhhCCCeEEEE---eCCchHHHHHHHHHcCCcc--cceeeCC-CCCCCCChHHHHHHHHhcCCCC-CcEEEEcCCchhh
Q 023578 154 FLDSKKIRRGLI---TRNIKEAVDLFHNRFGITF--SPALSRE-FRPYKPDPGPLLHICSTWEVQP-NEVMMVGDSLKDD 226 (280)
Q Consensus 154 ~L~~~g~~i~iv---S~~~~~~~~~~l~~~g~~f--d~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~-~~~v~iGDs~~~D 226 (280)
.+++.++...++ ++.....+...++..++.+ ... ..+ ...+ .|...++.+++++|+++ +++++|||+. ||
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~ei~~~~-~Kg~al~~l~~~~~i~~~~~v~~~GDs~-ND 219 (273)
T PRK00192 143 LAKDREFSEPFLWNGSEAAKERFEEALKRLGLKVTRGGR-FLHLLGGG-DKGKAVRWLKELYRRQDGVETIALGDSP-ND 219 (273)
T ss_pred HHHhcccCCceeecCchHHHHHHHHHHHHcCCEEEECCe-EEEEeCCC-CHHHHHHHHHHHHhccCCceEEEEcCCh-hh
Confidence 344555555555 3333344444555555431 010 112 2344 67789999999999999 9999999999 99
Q ss_pred HHHHHHcCCcEEEEcCCCCCCccccccCC-CCC-CEEE--cC--HHHHHHHHHhc
Q 023578 227 VACGKRAGAFTCLLDETGRYSADDFTKSN-LQP-DFRV--SS--LTEVLSILEAN 275 (280)
Q Consensus 227 i~~a~~~G~~~i~v~~~~~~~~~~~~~~~-~~~-d~v~--~~--~~dl~~~l~~~ 275 (280)
++|++.+|+.+++-+ +.++.+++. ..+ ++++ .+ =+.+.+.|+++
T Consensus 220 i~m~~~ag~~vam~N-----A~~~~k~~~~~~a~~~v~~~~~~~~~Gv~~~l~~~ 269 (273)
T PRK00192 220 LPMLEAADIAVVVPG-----PDGPNPPLLPGIADGEFILASAPGPEGWAEAINKL 269 (273)
T ss_pred HHHHHhCCeeEEeCC-----CCCCCcccCccccCCceEEecCCCcHHHHHHHHHH
Confidence 999999999988844 444443111 233 4555 34 23466666654
No 121
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.20 E-value=7.8e-11 Score=97.75 Aligned_cols=61 Identities=16% Similarity=0.298 Sum_probs=51.1
Q ss_pred ChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHH
Q 023578 198 DPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTE 267 (280)
Q Consensus 198 ~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~d 267 (280)
|..+++.+++.+|++++++++|||+. ||++|.+.+|..+++ +++.++.+. .+++++.+-++
T Consensus 187 K~~ai~~l~~~~~i~~~~~~~~GD~~-ND~~Ml~~~~~~~am-----~na~~~~k~---~a~~i~~~~~~ 247 (254)
T PF08282_consen 187 KGSAIKYLLEYLGISPEDIIAFGDSE-NDIEMLELAGYSVAM-----GNATPELKK---AADYITPSNND 247 (254)
T ss_dssp HHHHHHHHHHHHTTSGGGEEEEESSG-GGHHHHHHSSEEEEE-----TTS-HHHHH---HSSEEESSGTC
T ss_pred HHHHHHHHhhhcccccceeEEeeccc-ccHhHHhhcCeEEEE-----cCCCHHHHH---hCCEEecCCCC
Confidence 45578899999999999999999999 999999999998776 355556654 88999988776
No 122
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.20 E-value=1.3e-10 Score=95.88 Aligned_cols=48 Identities=31% Similarity=0.394 Sum_probs=44.9
Q ss_pred CCCCChHHHHHHHHhcCCCCCcE-EEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 194 PYKPDPGPLLHICSTWEVQPNEV-MMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~~lgi~~~~~-v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
.+||++.+|+.++++++++++++ +||||+..+|+.+|+++|+.+++|.
T Consensus 186 ~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~ 234 (236)
T TIGR01460 186 VGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVL 234 (236)
T ss_pred ecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEe
Confidence 67999999999999999998887 9999998579999999999999986
No 123
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.17 E-value=3.2e-11 Score=99.93 Aligned_cols=96 Identities=21% Similarity=0.206 Sum_probs=78.7
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccce--eeCC-CCCCCCChHHHHHHHHhcCCC-CCcEEE
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPA--LSRE-FRPYKPDPGPLLHICSTWEVQ-PNEVMM 218 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v--~~~~-~~~~Kp~~~~~~~~~~~lgi~-~~~~v~ 218 (280)
++++.++++.++++|+++ ++||....+.......+|.. +..+ .+++ ...+||+|.+|+.+++++|.. +++++|
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~~ 218 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRMLM 218 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEEE
Confidence 578888999998899997 88998877776566666665 4433 4554 458999999999999999975 678999
Q ss_pred EcCCchhhHHHHHHcCCcEEEEc
Q 023578 219 VGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 219 iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
|||+..+|+.+|+++|+.+++|.
T Consensus 219 vGD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 219 VGDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred ECCCcHHHHHHHHHCCCeEEEEe
Confidence 99994399999999999999985
No 124
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=99.17 E-value=7.1e-11 Score=94.27 Aligned_cols=176 Identities=15% Similarity=0.131 Sum_probs=98.4
Q ss_pred cE-EEEeCCCcccCCCCCHHHHHHHHhCCchHHHHHhcCCChhhHHHHhhccChhHHHHHHHHHHHHHHhcCCCcccCcC
Q 023578 69 RG-VVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIMPG 147 (280)
Q Consensus 69 k~-iiFD~DGTL~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg 147 (280)
|+ |.+||||||.|....+.+.+++.++.+.......... ......+.....+..+.+...+. .......++|.||
T Consensus 2 ~i~I~iDiDgVLad~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~~~~~g~~~~e~~~~~~~~~~--~~~~f~~l~p~~g 77 (191)
T PF06941_consen 2 KIRIAIDIDGVLADFNSAFIEWFNEEFGKNPELTPEDITG--YWDWEKWGITEPEFYEKLWRFYE--EPGFFSNLPPIPG 77 (191)
T ss_dssp -EEEEEESBTTTB-HHHHHHHHHHHHTTTS----GGGGTS--SSHHHHHHHHSTTHHHHHHHHHT--STTTTTT--B-TT
T ss_pred CcEEEEECCCCCcccHHHHHHHHHHHcCCCCCCCHHHhhh--hhHHHHhCCCCHHHHHHHHHHHh--ChhhhcCCCccHH
Confidence 45 9999999999988888888888766652111110000 01112222222233333333211 1234567899999
Q ss_pred HHHHHHHhhhCCCeEEEEeCCchH-------HHHHHHHH-cCCc-ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEE
Q 023578 148 TAQLCGFLDSKKIRRGLITRNIKE-------AVDLFHNR-FGIT-FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMM 218 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~~~-------~~~~~l~~-~g~~-fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~ 218 (280)
+.+++++|.+.|+.++++|..... .....+++ +|.. ++.++.+.. |. .++.+ ++
T Consensus 78 A~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~---K~----------~v~~D----vl 140 (191)
T PF06941_consen 78 AVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGD---KT----------LVGGD----VL 140 (191)
T ss_dssp HHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESS---GG----------GC--S----EE
T ss_pred HHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecC---CC----------eEecc----EE
Confidence 999999999999888888765433 22334443 3432 444433211 21 12323 89
Q ss_pred EcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHh
Q 023578 219 VGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEA 274 (280)
Q Consensus 219 iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~ 274 (280)
|+|++ .++..+...|+.++++..+++... ..-..+.|+.|+.+.|-+
T Consensus 141 IDD~~-~n~~~~~~~g~~~iLfd~p~Nr~~--------~~~~Rv~~W~ei~~~i~~ 187 (191)
T PF06941_consen 141 IDDRP-HNLEQFANAGIPVILFDQPYNRDE--------SNFPRVNNWEEIEDLILS 187 (191)
T ss_dssp EESSS-HHHSS-SSESSEEEEE--GGGTT----------TSEEE-STTSHHHHHHH
T ss_pred ecCCh-HHHHhccCCCceEEEEcCCCCCCC--------CCCccCCCHHHHHHHHHh
Confidence 99999 999999999999999987443221 245679999999888743
No 125
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.14 E-value=2.1e-10 Score=94.89 Aligned_cols=56 Identities=11% Similarity=-0.067 Sum_probs=49.0
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-CCCCCCChH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-FRPYKPDPG 200 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~~~~Kp~~~ 200 (280)
.||+.++|++|+++|++++|+|++.+..+...++.+|+. |+.+++++ ....||+++
T Consensus 148 dPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gdv~~~kp~~e 206 (301)
T TIGR01684 148 DPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGHKAEEYSTMS 206 (301)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEECCccccCCCCcc
Confidence 499999999999999999999999999999999999999 88888754 556666554
No 126
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.14 E-value=4.6e-10 Score=93.84 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=51.4
Q ss_pred CCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHH
Q 023578 195 YKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTE 267 (280)
Q Consensus 195 ~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~d 267 (280)
+-.|..+++.+++++|++++++++|||+. ||++|++.+|+.+++- ++.++.+ ..+++++.+.++
T Consensus 186 ~~~K~~~i~~~~~~~~~~~~~~~~~GD~~-nD~~m~~~~~~~~a~~-----na~~~~k---~~a~~~~~~n~~ 249 (256)
T TIGR00099 186 GVSKGSALQSLAEALGISLEDVIAFGDGM-NDIEMLEAAGYGVAMG-----NADEELK---ALADYVTDSNNE 249 (256)
T ss_pred CCChHHHHHHHHHHcCCCHHHEEEeCCcH-HhHHHHHhCCceeEec-----CchHHHH---HhCCEEecCCCC
Confidence 34467789999999999999999999999 9999999999987773 3333444 478888877544
No 127
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.08 E-value=9.6e-10 Score=94.17 Aligned_cols=102 Identities=18% Similarity=0.137 Sum_probs=83.8
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHc-C-------Cc--ccceeeCCCC----------------
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRF-G-------IT--FSPALSREFR---------------- 193 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~-g-------~~--fd~v~~~~~~---------------- 193 (280)
..+...||+.++|+.|+++|++++|+||+...+++.+++.+ | +. ||.++++..+
T Consensus 181 ~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~ 260 (343)
T TIGR02244 181 KYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVE 260 (343)
T ss_pred HHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCC
Confidence 44567999999999999999999999999999999999996 6 44 8988765321
Q ss_pred --CCCCC-------h-----HHHHHHHHhcCCCCCcEEEEcCCchhhHHHHH-HcCCcEEEEc
Q 023578 194 --PYKPD-------P-----GPLLHICSTWEVQPNEVMMVGDSLKDDVACGK-RAGAFTCLLD 241 (280)
Q Consensus 194 --~~Kp~-------~-----~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~-~~G~~~i~v~ 241 (280)
..++. . .-...+.+.+|+.+++++||||+...|+..++ .+||.|++|.
T Consensus 261 ~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~ 323 (343)
T TIGR02244 261 TGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAII 323 (343)
T ss_pred CCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEc
Confidence 01111 1 13467888899999999999999999999998 8999999987
No 128
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.08 E-value=1.8e-10 Score=97.08 Aligned_cols=80 Identities=9% Similarity=0.018 Sum_probs=60.9
Q ss_pred CCCCCChHHHHHHHHhcCC---CCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCcc-ccccCCCCCCEEEcCHH--
Q 023578 193 RPYKPDPGPLLHICSTWEV---QPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSAD-DFTKSNLQPDFRVSSLT-- 266 (280)
Q Consensus 193 ~~~Kp~~~~~~~~~~~lgi---~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~-~~~~~~~~~d~v~~~~~-- 266 (280)
..+-.|..+++.+++++|+ +++++++|||+. ||++|.+.+|..+++-+. .... .++..+..+++++....
T Consensus 183 ~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~-NDi~Ml~~ag~gvAM~~~---~~~~~~l~~~~~~~~~~~~~~~~~ 258 (271)
T PRK03669 183 DASAGKDQAANWLIATYQQLSGTRPTTLGLGDGP-NDAPLLDVMDYAVVVKGL---NREGVHLQDDDPARVYRTQREGPE 258 (271)
T ss_pred cCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCH-HHHHHHHhCCEEEEecCC---CCCCcccccccCCceEeccCCCcH
Confidence 3566778999999999999 999999999999 999999999998887431 1111 23223457888888776
Q ss_pred HHHHHHHhcc
Q 023578 267 EVLSILEANF 276 (280)
Q Consensus 267 dl~~~l~~~~ 276 (280)
.+.+.|+.++
T Consensus 259 g~~~~l~~~~ 268 (271)
T PRK03669 259 GWREGLDHFF 268 (271)
T ss_pred HHHHHHHHHH
Confidence 5777666654
No 129
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=99.06 E-value=1.2e-09 Score=90.56 Aligned_cols=83 Identities=14% Similarity=0.066 Sum_probs=64.7
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCCCCCCC--------------------------
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRPYK-------------------------- 196 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~~~~~K-------------------------- 196 (280)
.|++.++|++|+++|++++|+||+.+..+...++.+|+. |+.+++++...+|
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~~ 229 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVTD 229 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccEEEECCCcccccccceeecccceeEEecCceeEeCCc
Confidence 499999999999999999999999999999999999999 8888775432222
Q ss_pred ----C-ChHHHHHHHHhcCCCC-CcEEEEcCCchhhH
Q 023578 197 ----P-DPGPLLHICSTWEVQP-NEVMMVGDSLKDDV 227 (280)
Q Consensus 197 ----p-~~~~~~~~~~~lgi~~-~~~v~iGDs~~~Di 227 (280)
| .|......+++.|+.. ..+--|+|-..||+
T Consensus 230 ~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~~Nn~ 266 (303)
T PHA03398 230 VKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKSNNY 266 (303)
T ss_pred ccCCCCCCeehHHHHHHcCcceeccEEEeccCcccCc
Confidence 1 3667778888888865 34556777664554
No 130
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.04 E-value=2.8e-10 Score=93.92 Aligned_cols=107 Identities=8% Similarity=0.052 Sum_probs=71.1
Q ss_pred CCeEEEEeCCch----HHHHHHHHHcCCcccceeeC----C-CCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHH
Q 023578 159 KIRRGLITRNIK----EAVDLFHNRFGITFSPALSR----E-FRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVAC 229 (280)
Q Consensus 159 g~~i~ivS~~~~----~~~~~~l~~~g~~fd~v~~~----~-~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~ 229 (280)
.+++.+...... ..+...++..+..+..++++ + ...+.+|+.+++.+++++|++++++++|||+. ||++|
T Consensus 112 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ei~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~-nD~~m 190 (236)
T TIGR02471 112 PFKISYLLDPEGEPILPQIRQRLRQQSQAAKVILSCGWFLDVLPLRASKGLALRYLSYRWGLPLEQILVAGDSG-NDEEM 190 (236)
T ss_pred CeeEEEEECcccchHHHHHHHHHHhccCCEEEEEECCceEEEeeCCCChHHHHHHHHHHhCCCHHHEEEEcCCc-cHHHH
Confidence 356666554321 12334445555444444454 3 34678899999999999999999999999999 99999
Q ss_pred HHHcCCcEEEEcCCCCCCccccccCCCCCC----EEEcCHH--HHHHHHHh
Q 023578 230 GKRAGAFTCLLDETGRYSADDFTKSNLQPD----FRVSSLT--EVLSILEA 274 (280)
Q Consensus 230 a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d----~v~~~~~--dl~~~l~~ 274 (280)
++.+|..+++ .++.++.+. .++ +++.+-. .+.+.|++
T Consensus 191 l~~~~~~iav-----~na~~~~k~---~a~~~~~~v~~~~~~~Gv~~~i~~ 233 (236)
T TIGR02471 191 LRGLTLGVVV-----GNHDPELEG---LRHQQRIYFANNPHAFGILEGINH 233 (236)
T ss_pred HcCCCcEEEE-----cCCcHHHHH---hhcCCcEEEcCCCChhHHHHHHHh
Confidence 9999987765 245555554 455 6776532 25555543
No 131
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.01 E-value=2.3e-09 Score=99.18 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=86.1
Q ss_pred cccCcCHHHHHHHhhhCC-CeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEc
Q 023578 142 LQIMPGTAQLCGFLDSKK-IRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g-~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iG 220 (280)
..++||+.+++++|+++| ++++++||.....++.+++++|++ .+++.- .+++|+ ..+++++..+++|+|||
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~--~~f~~~--~p~~K~----~~v~~l~~~~~~v~~vG 454 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGID--EVHAEL--LPEDKL----AIVKELQEEGGVVAMVG 454 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCC--eeeccC--CHHHHH----HHHHHHHHcCCEEEEEE
Confidence 467899999999999999 999999999999999999999985 222211 112233 45555555677999999
Q ss_pred CCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEc--CHHHHHHHHH
Q 023578 221 DSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVS--SLTEVLSILE 273 (280)
Q Consensus 221 Ds~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~--~~~dl~~~l~ 273 (280)
|+. +|+.+++++|+.+.+ +++.+.. +..+|+++. ++..+.+.++
T Consensus 455 Dg~-nD~~al~~A~vgia~-----g~~~~~~---~~~Ad~vi~~~~~~~l~~~i~ 500 (556)
T TIGR01525 455 DGI-NDAPALAAADVGIAM-----GAGSDVA---IEAADIVLLNDDLSSLPTAID 500 (556)
T ss_pred CCh-hHHHHHhhCCEeEEe-----CCCCHHH---HHhCCEEEeCCCHHHHHHHHH
Confidence 999 999999999964443 1222222 247999998 7888877764
No 132
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=99.00 E-value=1.6e-08 Score=84.74 Aligned_cols=68 Identities=21% Similarity=0.180 Sum_probs=55.3
Q ss_pred CChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHc----CCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHH
Q 023578 197 PDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRA----GAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSIL 272 (280)
Q Consensus 197 p~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~----G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l 272 (280)
.|..+++++++++|+..+++++|||+. ||..|.+.+ |+. |.|. ++. ..|.+.+.+..++..+|
T Consensus 174 ~Kg~al~~ll~~~~~~~~~v~~~GD~~-nD~~mf~~~~~~~g~~-vavg----~a~-------~~A~~~l~~~~~v~~~L 240 (266)
T PRK10187 174 NKGEAIAAFMQEAPFAGRTPVFVGDDL-TDEAGFAVVNRLGGIS-VKVG----TGA-------TQASWRLAGVPDVWSWL 240 (266)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEcCCc-cHHHHHHHHHhcCCeE-EEEC----CCC-------CcCeEeCCCHHHHHHHH
Confidence 456788899999999999999999999 999999998 654 4443 221 47889999999999999
Q ss_pred HhccC
Q 023578 273 EANFD 277 (280)
Q Consensus 273 ~~~~~ 277 (280)
..+.+
T Consensus 241 ~~l~~ 245 (266)
T PRK10187 241 EMITT 245 (266)
T ss_pred HHHHH
Confidence 87653
No 133
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.00 E-value=4.5e-09 Score=82.36 Aligned_cols=101 Identities=19% Similarity=0.184 Sum_probs=72.4
Q ss_pred CCcccCcCHHHHHHHhhhCCC-eEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-----CC-----C--------CCC-
Q 023578 140 DRLQIMPGTAQLCGFLDSKKI-RRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-----FR-----P--------YKP- 197 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~-~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-----~~-----~--------~Kp- 197 (280)
..++..||+.++++.+++.|. .+.|+|+.+..+++.+++.+|+. |..|++.- .| . .-|
T Consensus 81 r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPs 160 (256)
T KOG3120|consen 81 RSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPS 160 (256)
T ss_pred hcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCch
Confidence 567889999999999999985 99999999999999999999998 77776521 11 1 112
Q ss_pred ---ChHHHHHHH-H--hcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 198 ---DPGPLLHIC-S--TWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 198 ---~~~~~~~~~-~--~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
|...+..+. + +-|+..++.+|+||+. +|+-......-.-+...
T Consensus 161 NmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~-nD~CP~l~Lr~~D~amp 209 (256)
T KOG3120|consen 161 NMCKGLVLDELVASQLKDGVRYERLIYVGDGA-NDFCPVLRLRACDVAMP 209 (256)
T ss_pred hhhhhHHHHHHHHHHhhcCCceeeEEEEcCCC-CCcCcchhcccCceecc
Confidence 222333322 2 2367788999999999 99877665543333333
No 134
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.99 E-value=2.9e-09 Score=98.00 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=87.9
Q ss_pred cccCcCHHHHHHHhhhCCC-eEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEc
Q 023578 142 LQIMPGTAQLCGFLDSKKI-RRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~-~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iG 220 (280)
..++||+.+.+++|+++|+ +++++||.....++.+++.+|++ .+++.-. +.+| ..++++++...++++|||
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~--~~f~~~~--p~~K----~~~i~~l~~~~~~v~~vG 432 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGID--EVHAELL--PEDK----LEIVKELREKYGPVAMVG 432 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCCh--hhhhccC--cHHH----HHHHHHHHhcCCEEEEEe
Confidence 4678999999999999999 99999999999999999999986 2221111 1222 446666666678999999
Q ss_pred CCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEE--cCHHHHHHHHH
Q 023578 221 DSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRV--SSLTEVLSILE 273 (280)
Q Consensus 221 Ds~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~--~~~~dl~~~l~ 273 (280)
|+. +|+.+++++|+...+ . ..+.+... ..+|+++ +++.++.+++.
T Consensus 433 Dg~-nD~~al~~A~vgia~-g---~~~~~~~~---~~ad~vl~~~~l~~l~~~i~ 479 (536)
T TIGR01512 433 DGI-NDAPALAAADVGIAM-G---ASGSDVAI---ETADVVLLNDDLSRLPQAIR 479 (536)
T ss_pred CCH-HHHHHHHhCCEEEEe-C---CCccHHHH---HhCCEEEECCCHHHHHHHHH
Confidence 999 999999999974443 1 12222222 4889999 89999988765
No 135
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.99 E-value=5.4e-09 Score=75.04 Aligned_cols=124 Identities=16% Similarity=0.250 Sum_probs=101.0
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEc
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iG 220 (280)
.-.+++.+.+.++.|.+. ++++|.|+.....+.+..+..|++.+.++.+ .+++....+++.++-..+.|++||
T Consensus 28 gGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~rv~a~------a~~e~K~~ii~eLkk~~~k~vmVG 100 (152)
T COG4087 28 GGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVERVFAG------ADPEMKAKIIRELKKRYEKVVMVG 100 (152)
T ss_pred CcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCceeeeecc------cCHHHHHHHHHHhcCCCcEEEEec
Confidence 347899999999999999 9999999999999999999999885555433 344677788888887778999999
Q ss_pred CCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhccC
Q 023578 221 DSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANFD 277 (280)
Q Consensus 221 Ds~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~~ 277 (280)
|+. ||+.+.+++.+..+.+.+.+.|. +.. ..+|+++.++.|+.+++....+
T Consensus 101 nGa-ND~laLr~ADlGI~tiq~e~v~~--r~l---~~ADvvik~i~e~ldl~~~~~~ 151 (152)
T COG4087 101 NGA-NDILALREADLGICTIQQEGVPE--RLL---LTADVVLKEIAEILDLLKDTSE 151 (152)
T ss_pred CCc-chHHHhhhcccceEEeccCCcch--HHH---hhchhhhhhHHHHHHHhhcccc
Confidence 999 99999999988877776533332 222 4899999999999999877654
No 136
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.96 E-value=4.7e-09 Score=97.07 Aligned_cols=114 Identities=17% Similarity=0.228 Sum_probs=85.8
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcC
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGD 221 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGD 221 (280)
..++||+.+++++|+++|++++++||.....++.+.+.+|++ +++ +. .+++|.+ .+++++.++++|+||||
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~---~~~-~~-~p~~K~~----~v~~l~~~~~~v~~VGD 474 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN---VRA-EV-LPDDKAA----LIKELQEKGRVVAMVGD 474 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc---EEc-cC-ChHHHHH----HHHHHHHcCCEEEEEeC
Confidence 357899999999999999999999999999999999999985 222 11 1233333 44444446789999999
Q ss_pred CchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEE--cCHHHHHHHHH
Q 023578 222 SLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRV--SSLTEVLSILE 273 (280)
Q Consensus 222 s~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~--~~~~dl~~~l~ 273 (280)
+. ||+.+++++|+...+ . ++.+.. ...+|+++ +++.++.++++
T Consensus 475 g~-nD~~al~~A~vgia~-g----~g~~~a---~~~Advvl~~~~l~~l~~~i~ 519 (562)
T TIGR01511 475 GI-NDAPALAQADVGIAI-G----AGTDVA---IEAADVVLMRNDLNDVATAID 519 (562)
T ss_pred CC-ccHHHHhhCCEEEEe-C----CcCHHH---HhhCCEEEeCCCHHHHHHHHH
Confidence 99 999999999985433 1 222222 24789999 48888888764
No 137
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=98.90 E-value=1.9e-08 Score=81.14 Aligned_cols=44 Identities=18% Similarity=0.140 Sum_probs=41.1
Q ss_pred CCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEE
Q 023578 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTC 238 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i 238 (280)
.+.+|+.+++.+++++|++++++++|||+. +|+.+++.+|+.++
T Consensus 160 ~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~-nD~~~~~~~~~~va 203 (204)
T TIGR01484 160 AGVDKGSALQALLKELNGKRDEILAFGDSG-NDEEMFEVAGLAVA 203 (204)
T ss_pred CCCChHHHHHHHHHHhCCCHHHEEEEcCCH-HHHHHHHHcCCceE
Confidence 567888999999999999999999999999 99999999999765
No 138
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.89 E-value=2e-08 Score=82.01 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=38.5
Q ss_pred CCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEE
Q 023578 196 KPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCL 239 (280)
Q Consensus 196 Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~ 239 (280)
-.|+.+++.+++++|++++++++|||+. ||++|.+.+|..++.
T Consensus 178 ~~Kg~al~~l~~~lgi~~~~vi~~GD~~-NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 178 SSKGKAANWLKATYNQPDVKTLGLGDGP-NDLPLLEVADYAVVI 220 (221)
T ss_pred CCHHHHHHHHHHHhCCCCCcEEEECCCH-HHHHHHHhCCceEEe
Confidence 3466789999999999999999999999 999999999987653
No 139
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.87 E-value=1.4e-08 Score=84.58 Aligned_cols=84 Identities=10% Similarity=0.137 Sum_probs=60.0
Q ss_pred hCCCeEEEEeCCch-----HHHHHHHHHcCCcccceeeC----C-CCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhh
Q 023578 157 SKKIRRGLITRNIK-----EAVDLFHNRFGITFSPALSR----E-FRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDD 226 (280)
Q Consensus 157 ~~g~~i~ivS~~~~-----~~~~~~l~~~g~~fd~v~~~----~-~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~D 226 (280)
+.-+++.++..... ......+...++.+..++++ + ...+.+|..+++.+++++|++++++++|||+. ||
T Consensus 117 ~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ldi~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~-ND 195 (249)
T TIGR01485 117 QRPHKVSFFLDPEAAPEVIKQLTEMLKETGLDVKLIYSSGKDLDILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSG-ND 195 (249)
T ss_pred cCCeeEEEEechhhhhHHHHHHHHHHHhcCCCEEEEEECCceEEEEeCCCChHHHHHHHHHHcCCCccCEEEEECCh-hH
Confidence 34466777665322 22234445556555445554 3 34678899999999999999999999999999 99
Q ss_pred HHHHHHcCCcEEEEc
Q 023578 227 VACGKRAGAFTCLLD 241 (280)
Q Consensus 227 i~~a~~~G~~~i~v~ 241 (280)
++|++.+|..++.+.
T Consensus 196 ~~ml~~~~~~~va~~ 210 (249)
T TIGR01485 196 IELFEIGSVRGVIVS 210 (249)
T ss_pred HHHHHccCCcEEEEC
Confidence 999999666666665
No 140
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.87 E-value=3.3e-08 Score=70.15 Aligned_cols=82 Identities=13% Similarity=0.093 Sum_probs=54.3
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchH---HHHHHHHHcCCc--ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEE
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKE---AVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVM 217 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~---~~~~~l~~~g~~--fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v 217 (280)
.++||+.+++++|+++|.+++++||++.. .....++.+|+. .+.++++. ......+++. .....++
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~--------~~~~~~l~~~-~~~~~v~ 84 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSG--------MAAAEYLKEH-KGGKKVY 84 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHH--------HHHHHHHHHH-TTSSEEE
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChH--------HHHHHHHHhc-CCCCEEE
Confidence 58999999999999999999999997533 344455888988 55566532 2223333332 2356788
Q ss_pred EEcCCchhhHHHHHHcCC
Q 023578 218 MVGDSLKDDVACGKRAGA 235 (280)
Q Consensus 218 ~iGDs~~~Di~~a~~~G~ 235 (280)
++|-.. ..+.++.+|+
T Consensus 85 vlG~~~--l~~~l~~~G~ 100 (101)
T PF13344_consen 85 VLGSDG--LREELREAGF 100 (101)
T ss_dssp EES-HH--HHHHHHHTTE
T ss_pred EEcCHH--HHHHHHHcCC
Confidence 888665 6667777764
No 141
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.83 E-value=1.1e-07 Score=79.60 Aligned_cols=76 Identities=9% Similarity=-0.061 Sum_probs=55.4
Q ss_pred CCCCChHHHHHHHHhcCCC--CCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCC---CCEEEcCHHH-
Q 023578 194 PYKPDPGPLLHICSTWEVQ--PNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQ---PDFRVSSLTE- 267 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~~lgi~--~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~---~d~v~~~~~d- 267 (280)
.+-.|..+++.+++++|++ .+++++|||+. ||++|.+.+|..+++-+ +.++.++++.. +++|+.+..+
T Consensus 173 ~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~-ND~~Ml~~ag~~vam~N-----a~~~~~~lk~~~~a~~~vt~~~~~d 246 (256)
T TIGR01486 173 AGSDKGKAANALKQFYNQPGGAIKVVGLGDSP-NDLPLLEVVDLAVVVPG-----PNGPNVSLKPGDPGSFLLTPAPGPE 246 (256)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCceEEEEcCCH-hhHHHHHHCCEEEEeCC-----CCCCccccCccCCCcEEEcCCCCcH
Confidence 4567778999999999999 99999999999 99999999999888733 33221222334 3488866433
Q ss_pred -HHHHHHhc
Q 023578 268 -VLSILEAN 275 (280)
Q Consensus 268 -l~~~l~~~ 275 (280)
+.+.|+++
T Consensus 247 Gva~~l~~~ 255 (256)
T TIGR01486 247 GWREALEHL 255 (256)
T ss_pred HHHHHHHHh
Confidence 55555543
No 142
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.80 E-value=9.1e-08 Score=78.25 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=33.0
Q ss_pred ChHHHHHHHHhcCC--CCCcEEEEcCCchhhHHHHHHcCCcEE
Q 023578 198 DPGPLLHICSTWEV--QPNEVMMVGDSLKDDVACGKRAGAFTC 238 (280)
Q Consensus 198 ~~~~~~~~~~~lgi--~~~~~v~iGDs~~~Di~~a~~~G~~~i 238 (280)
|+...+.+++.+++ ++.++++|||+. ||+.|.+.+|+.++
T Consensus 182 K~~al~~l~~~~~~~~~~~~~i~~GD~~-nD~~ml~~ag~~v~ 223 (225)
T TIGR02461 182 KGKAIKRLLDLYKLRPGAIESVGLGDSE-NDFPMFEVVDLAFL 223 (225)
T ss_pred HHHHHHHHHHHhccccCcccEEEEcCCH-HHHHHHHhCCCcEe
Confidence 44566777777765 677899999999 99999999999764
No 143
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.78 E-value=1.4e-07 Score=72.66 Aligned_cols=94 Identities=20% Similarity=0.183 Sum_probs=61.9
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHH---HHHHH-----cCCcccceeeCCC----------CCCCC---ChHH
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVD---LFHNR-----FGITFSPALSREF----------RPYKP---DPGP 201 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~---~~l~~-----~g~~fd~v~~~~~----------~~~Kp---~~~~ 201 (280)
...|++.+++++++++|++++++|++...... ..++. .++....++++.. ...+| |.+.
T Consensus 27 ~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~~~ 106 (157)
T smart00775 27 WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKIAC 106 (157)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhhcccccCCHHHHHHHH
Confidence 35699999999999999999999998877663 56666 2232224444321 12233 3445
Q ss_pred HHHHHHhcCCCCCcE-EEEcCCchhhHHHHHHcCCcE
Q 023578 202 LLHICSTWEVQPNEV-MMVGDSLKDDVACGKRAGAFT 237 (280)
Q Consensus 202 ~~~~~~~lgi~~~~~-v~iGDs~~~Di~~a~~~G~~~ 237 (280)
+..+.+.+.-..... ..+||.. +|+++=+++|+..
T Consensus 107 l~~i~~~~~~~~~~f~~~~gn~~-~D~~~y~~~gi~~ 142 (157)
T smart00775 107 LRDIKSLFPPQGNPFYAGFGNRI-TDVISYSAVGIPP 142 (157)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCc-hhHHHHHHcCCCh
Confidence 555555543222234 3588889 9999999999953
No 144
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.77 E-value=4.2e-08 Score=95.01 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=89.6
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCC
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs 222 (280)
.++||+.+.+++|++.|++++++|+......+.+.+.+|+. .+++.-. |+....++++++..+++++||||+
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~--~~~~~~~------p~~K~~~i~~l~~~~~~v~~vGDg 721 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGID--EVIAGVL------PDGKAEAIKRLQSQGRQVAMVGDG 721 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC--EEEeCCC------HHHHHHHHHHHhhcCCEEEEEeCC
Confidence 66899999999999999999999999999999999999985 2332211 334456777788788899999999
Q ss_pred chhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHH
Q 023578 223 LKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILE 273 (280)
Q Consensus 223 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~ 273 (280)
. ||+.+++++|+..++ +++.+...+ .+...+..+++.++...++
T Consensus 722 ~-nD~~al~~Agvgia~-----g~g~~~a~~-~ad~vl~~~~~~~i~~~i~ 765 (834)
T PRK10671 722 I-NDAPALAQADVGIAM-----GGGSDVAIE-TAAITLMRHSLMGVADALA 765 (834)
T ss_pred H-HHHHHHHhCCeeEEe-----cCCCHHHHH-hCCEEEecCCHHHHHHHHH
Confidence 9 999999999996555 233333333 3455556678888888875
No 145
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.72 E-value=1.1e-07 Score=77.02 Aligned_cols=97 Identities=15% Similarity=0.012 Sum_probs=64.8
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHH---HHHHHHHcCCc-ccceeeCC-CCCCCCC----hHHHHHHHHhcC
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEA---VDLFHNRFGIT-FSPALSRE-FRPYKPD----PGPLLHICSTWE 210 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~---~~~~l~~~g~~-fd~v~~~~-~~~~Kp~----~~~~~~~~~~lg 210 (280)
...++.|++.++++.++++|++|+++||..... +...|.+.|++ ++.++-.. ....|+. .....++.+ -|
T Consensus 117 ~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~-~G 195 (229)
T TIGR01675 117 GAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRGLEDSNKTVVTYKSEVRKSLME-EG 195 (229)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecCCCCCCchHhHHHHHHHHHHHh-CC
Confidence 356899999999999999999999999988655 66777888887 66655533 2223331 122222221 11
Q ss_pred CCCCcEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 211 VQPNEVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 211 i~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
..=+..|||.. +|+.. ..+|.++.-+.
T Consensus 196 --YrIv~~iGDq~-sDl~G-~~~~~RtFKLP 222 (229)
T TIGR01675 196 --YRIWGNIGDQW-SDLLG-SPPGRRTFKLP 222 (229)
T ss_pred --ceEEEEECCCh-HHhcC-CCccCceeeCC
Confidence 12256899999 99955 45666666554
No 146
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=98.70 E-value=5e-08 Score=80.91 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=57.6
Q ss_pred CChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHc-------CCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHH
Q 023578 197 PDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRA-------GAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVL 269 (280)
Q Consensus 197 p~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~-------G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~ 269 (280)
.|...++.++++++++++++++|||+. +|+.+++.+ |..++.+.. +. .+..+++++++..++.
T Consensus 167 ~Kg~a~~~~~~~~~~~~~~~i~iGD~~-~D~~~~~~~~~~~~~~g~~~v~v~~----g~-----~~~~A~~~~~~~~~v~ 236 (244)
T TIGR00685 167 NKGEIVKRLLWHQPGSGISPVYLGDDI-TDEDAFRVVNNQWGNYGFYPVPIGS----GS-----KKTVAKFHLTGPQQVL 236 (244)
T ss_pred CHHHHHHHHHHhcccCCCceEEEcCCC-cHHHHHHHHhcccCCCCeEEEEEec----CC-----cCCCceEeCCCHHHHH
Confidence 346899999999999999999999999 999999999 666666641 21 1358999999999999
Q ss_pred HHHHhc
Q 023578 270 SILEAN 275 (280)
Q Consensus 270 ~~l~~~ 275 (280)
++|+.+
T Consensus 237 ~~L~~l 242 (244)
T TIGR00685 237 EFLGLL 242 (244)
T ss_pred HHHHHH
Confidence 998765
No 147
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.68 E-value=2.6e-08 Score=81.44 Aligned_cols=95 Identities=18% Similarity=0.237 Sum_probs=63.8
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCch---HHHHHHHHHcCCc-ccceee-CCCC-CC----CCChHHHHHHHHh-cC
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIK---EAVDLFHNRFGIT-FSPALS-REFR-PY----KPDPGPLLHICST-WE 210 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~~---~~~~~~l~~~g~~-fd~v~~-~~~~-~~----Kp~~~~~~~~~~~-lg 210 (280)
..+.||+.++++.++++|+.|+++||... .....-|++.|+. .+.++- .+.. .. .-|......+.++ +.
T Consensus 114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy~ 193 (229)
T PF03767_consen 114 APAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGYR 193 (229)
T ss_dssp GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTEE
T ss_pred CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHcCCc
Confidence 48899999999999999999999999544 4556677888877 465543 2211 11 1134455555555 43
Q ss_pred CCCCcEEEEcCCchhhHHHHHHc---CCcEEEEc
Q 023578 211 VQPNEVMMVGDSLKDDVACGKRA---GAFTCLLD 241 (280)
Q Consensus 211 i~~~~~v~iGDs~~~Di~~a~~~---G~~~i~v~ 241 (280)
+ +++|||+. +|+..++.. |.+++.+.
T Consensus 194 I----i~~iGD~~-~D~~~~~~~~~~~~r~f~lP 222 (229)
T PF03767_consen 194 I----IANIGDQL-SDFSGAKTAGARAERWFKLP 222 (229)
T ss_dssp E----EEEEESSG-GGCHCTHHHHHHHTTEEE-T
T ss_pred E----EEEeCCCH-HHhhcccccccccceEEEcC
Confidence 4 78999999 999984433 44555554
No 148
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.66 E-value=1.4e-07 Score=91.72 Aligned_cols=123 Identities=21% Similarity=0.260 Sum_probs=95.2
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCC-C----------------CCCCCChHHHH
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSRE-F----------------RPYKPDPGPLL 203 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~-~----------------~~~Kp~~~~~~ 203 (280)
++.||+.+.++.|++.|++++++||.....+..+.+.+|+. ++.+++++ . ......|+-..
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K~ 607 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHKM 607 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHHH
Confidence 66899999999999999999999999999999999999986 34444432 1 13345667777
Q ss_pred HHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEE--cCHHHHHHHHH
Q 023578 204 HICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRV--SSLTEVLSILE 273 (280)
Q Consensus 204 ~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~--~~~~dl~~~l~ 273 (280)
.+.+.++-..+.+.|+||+. ||..++++|++...+ . ..+.+-.+ ..+|+++ +++..+...++
T Consensus 608 ~iv~~lq~~g~~v~mvGDGv-ND~pAl~~AdVGia~-g---~~g~~va~---~aaDivl~dd~~~~i~~~i~ 671 (884)
T TIGR01522 608 KIVKALQKRGDVVAMTGDGV-NDAPALKLADIGVAM-G---QTGTDVAK---EAADMILTDDDFATILSAIE 671 (884)
T ss_pred HHHHHHHHCCCEEEEECCCc-ccHHHHHhCCeeEec-C---CCcCHHHH---HhcCEEEcCCCHHHHHHHHH
Confidence 77777776678899999999 999999999975544 1 12222222 4889999 66999988775
No 149
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=98.66 E-value=1.2e-06 Score=69.44 Aligned_cols=122 Identities=13% Similarity=0.111 Sum_probs=93.0
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc-----ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcE
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-----FSPALSREFRPYKPDPGPLLHICSTWEVQPNEV 216 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-----fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~ 216 (280)
...++++.+.++..+..|++++|.|+++...++.++..-+-. +++.+....| .|-....|..+.+.+|.++.++
T Consensus 122 ~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gdl~~y~~gyfDt~iG-~K~e~~sy~~I~~~Ig~s~~ei 200 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGDLRKYISGYFDTTIG-LKVESQSYKKIGHLIGKSPREI 200 (254)
T ss_pred ccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcchHHHHhhhhhhcccc-ceehhHHHHHHHHHhCCChhhe
Confidence 367999999999999999999999999988888777554432 2222222233 3666789999999999999999
Q ss_pred EEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHH
Q 023578 217 MMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEV 268 (280)
Q Consensus 217 v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl 268 (280)
+|.-|.. ....+|+.+|+.+..+.+||+-+-.+.. ...--++.+|..|
T Consensus 201 LfLTd~~-~Ea~aa~~aGl~a~l~~rPgna~l~dd~---~~~y~~i~~F~~l 248 (254)
T KOG2630|consen 201 LFLTDVP-REAAAARKAGLQAGLVSRPGNAPLPDDA---KVEYCVIWSFEIL 248 (254)
T ss_pred EEeccCh-HHHHHHHhcccceeeeecCCCCCCCccc---ccceeeeccchhh
Confidence 9999999 9999999999999999987665433222 2234556666554
No 150
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.65 E-value=1.8e-06 Score=71.58 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=75.7
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHH---HHHHcCCccccee-eC----------C-------------CCC
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDL---FHNRFGITFSPAL-SR----------E-------------FRP 194 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~---~l~~~g~~fd~v~-~~----------~-------------~~~ 194 (280)
-...+++.++++.|+++|+++..+|.....+... -++++|++|.... .. . ...
T Consensus 80 ~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~ 159 (252)
T PF11019_consen 80 ELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTG 159 (252)
T ss_pred EEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeC
Confidence 3456889999999999999999999977665443 4467888743321 00 0 014
Q ss_pred CCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHH----cCCcEEEEc
Q 023578 195 YKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKR----AGAFTCLLD 241 (280)
Q Consensus 195 ~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~----~G~~~i~v~ 241 (280)
+-++..++...+++.|..|+.++||+|+. .++....+ .|+.++++.
T Consensus 160 ~~~KG~~L~~fL~~~~~~pk~IIfIDD~~-~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 160 GQDKGEVLKYFLDKINQSPKKIIFIDDNK-ENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred CCccHHHHHHHHHHcCCCCCeEEEEeCCH-HHHHHHHHHHhhCCCcEEEEE
Confidence 56678999999999999999999999999 88876544 588888876
No 151
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=98.64 E-value=5.5e-07 Score=68.38 Aligned_cols=155 Identities=17% Similarity=0.094 Sum_probs=91.1
Q ss_pred CccEEEEeCCCcccCCCCCHHHHHHHHhCCchHHHHHhcCCChhhHHHHhhccChhHHHHHHHHHHHHHHhcCCCcccCc
Q 023578 67 RLRGVVFDMDGTLTVPVIDFPAMYRAVLGEDEYKRVKAENPTGIDILHHIESWSPDLQRHAYQTIADFERQGLDRLQIMP 146 (280)
Q Consensus 67 ~~k~iiFD~DGTL~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 146 (280)
+.=+|-||+|+|++=+.+.|...-+.+ .....+++ .-..+|+.....+-....|.+
T Consensus 62 ~Pi~VsFDIDDTvLFsSp~F~~Gk~~~------------sPgs~DyL------------knq~FW~~vn~g~D~~SIPKe 117 (237)
T COG3700 62 PPIAVSFDIDDTVLFSSPGFWRGKKYF------------SPGSEDYL------------KNQVFWEKVNNGWDEFSIPKE 117 (237)
T ss_pred CCeeEeeccCCeeEecccccccCcccc------------CCChHHhh------------cCHHHHHHHhcCCccccchHH
Confidence 455799999999996555443322221 11111111 111223333333323345666
Q ss_pred CHHHHHHHhhhCCCeEEEEeCCchHHHH----HHHHHcCCc--ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEc
Q 023578 147 GTAQLCGFLDSKKIRRGLITRNIKEAVD----LFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (280)
Q Consensus 147 g~~~~l~~L~~~g~~i~ivS~~~~~~~~----~~l~~~g~~--fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iG 220 (280)
-+.+++.....+|-.++.+|+....-++ .+.+.+.+. ...++.++-. ||...--...+...++ -++.|
T Consensus 118 vA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk~--k~~qy~Kt~~i~~~~~----~IhYG 191 (237)
T COG3700 118 VARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDKP--KPGQYTKTQWIQDKNI----RIHYG 191 (237)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCCC--CcccccccHHHHhcCc----eEEec
Confidence 6788999999999999999996554333 344556665 2334444422 3322222345555555 48999
Q ss_pred CCchhhHHHHHHcCCcEEEEcCCCCCCccccc
Q 023578 221 DSLKDDVACGKRAGAFTCLLDETGRYSADDFT 252 (280)
Q Consensus 221 Ds~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~ 252 (280)
||. +|+-+|+.+|.+.|-+-+-.+.....++
T Consensus 192 DSD-~Di~AAkeaG~RgIRilRAaNSTy~PlP 222 (237)
T COG3700 192 DSD-NDITAAKEAGARGIRILRAANSTYKPLP 222 (237)
T ss_pred CCc-hhhhHHHhcCccceeEEecCCccCCcCc
Confidence 999 9999999999999888764444443444
No 152
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.54 E-value=7.8e-08 Score=73.81 Aligned_cols=79 Identities=10% Similarity=0.075 Sum_probs=60.2
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---c-cceeeCCCCCCCCChHHHHHHHHhcCCCCCc
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---F-SPALSREFRPYKPDPGPLLHICSTWEVQPNE 215 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---f-d~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~ 215 (280)
....++||+.++|+.|++. +.++|+|++.+.++..+++.++.. | +.+++.+... .+ ..+.+-.-+|.+.+.
T Consensus 55 ~~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~-~~---~~KdL~~i~~~d~~~ 129 (156)
T TIGR02250 55 YLTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESG-SP---HTKSLLRLFPADESM 129 (156)
T ss_pred EEEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCC-CC---ccccHHHHcCCCccc
Confidence 3567899999999999966 999999999999999999999877 6 5566655321 11 111122345778899
Q ss_pred EEEEcCCc
Q 023578 216 VMMVGDSL 223 (280)
Q Consensus 216 ~v~iGDs~ 223 (280)
++.|+|++
T Consensus 130 vvivDd~~ 137 (156)
T TIGR02250 130 VVIIDDRE 137 (156)
T ss_pred EEEEeCCH
Confidence 99999999
No 153
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.48 E-value=8.7e-07 Score=86.62 Aligned_cols=122 Identities=18% Similarity=0.195 Sum_probs=91.2
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcc-c-----ceeeCC-----------------CCCCCCCh
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITF-S-----PALSRE-----------------FRPYKPDP 199 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~f-d-----~v~~~~-----------------~~~~Kp~~ 199 (280)
++.|++.+.++.|++.|++++++|+.....+..+.+..|+.. + ..+++. ....+..|
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~P 616 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEP 616 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecCH
Confidence 568999999999999999999999999899999999999851 1 122221 11223345
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcC--HHHHHHHHH
Q 023578 200 GPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSS--LTEVLSILE 273 (280)
Q Consensus 200 ~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~--~~dl~~~l~ 273 (280)
+-...+++.++-..+.+.|+||+. ||+.|.++|++..++- .+.+.. +..+|+++.+ +..+.+.+.
T Consensus 617 ~~K~~iV~~lq~~g~~va~iGDG~-ND~~alk~AdVGia~g-----~g~~~a---k~aAD~vl~dd~f~~i~~~i~ 683 (917)
T TIGR01116 617 SHKSELVELLQEQGEIVAMTGDGV-NDAPALKKADIGIAMG-----SGTEVA---KEASDMVLADDNFATIVAAVE 683 (917)
T ss_pred HHHHHHHHHHHhcCCeEEEecCCc-chHHHHHhCCeeEECC-----CCcHHH---HHhcCeEEccCCHHHHHHHHH
Confidence 555677777776667888999999 9999999999965541 232222 3489999987 888888765
No 154
>PLN02382 probable sucrose-phosphatase
Probab=98.47 E-value=4.8e-06 Score=74.11 Aligned_cols=45 Identities=13% Similarity=0.023 Sum_probs=39.4
Q ss_pred CCCCChHHHHHHHHhc---CCCCCcEEEEcCCchhhHHHHHHcC-CcEEE
Q 023578 194 PYKPDPGPLLHICSTW---EVQPNEVMMVGDSLKDDVACGKRAG-AFTCL 239 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~~l---gi~~~~~v~iGDs~~~Di~~a~~~G-~~~i~ 239 (280)
.+-.|..+++.+++++ |++++++++|||+. ||++|.+.+| ..+++
T Consensus 172 ~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~-NDleMl~~ag~~gvam 220 (413)
T PLN02382 172 QGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSG-NDAELFSVPDVYGVMV 220 (413)
T ss_pred CCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCH-HHHHHHhcCCCCEEEE
Confidence 4555778999999999 99999999999999 9999999999 45554
No 155
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.46 E-value=1.8e-06 Score=82.55 Aligned_cols=112 Identities=19% Similarity=0.220 Sum_probs=82.1
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCC
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs 222 (280)
+++||+.+.+++|++.|++++++|+.....++.+.+.+|+++ +... .| +-...++++++ .+..++||||+
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~---~~~~----~p--~~K~~~v~~l~-~~~~v~mvGDg 637 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDF---RAGL----LP--EDKVKAVTELN-QHAPLAMVGDG 637 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCe---ecCC----CH--HHHHHHHHHHh-cCCCEEEEECC
Confidence 678999999999999999999999999999999999999862 1111 11 22233455555 34689999999
Q ss_pred chhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEE--cCHHHHHHHHH
Q 023578 223 LKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRV--SSLTEVLSILE 273 (280)
Q Consensus 223 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~--~~~~dl~~~l~ 273 (280)
. ||..+++++++..++- .+.+...+ .+|+++ +++.+|.+.++
T Consensus 638 i-NDapAl~~A~vgia~g-----~~~~~a~~---~adivl~~~~l~~l~~~i~ 681 (741)
T PRK11033 638 I-NDAPAMKAASIGIAMG-----SGTDVALE---TADAALTHNRLRGLAQMIE 681 (741)
T ss_pred H-HhHHHHHhCCeeEEec-----CCCHHHHH---hCCEEEecCCHHHHHHHHH
Confidence 9 9999999999766652 23333333 456655 67888877664
No 156
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.45 E-value=3.1e-07 Score=66.10 Aligned_cols=84 Identities=13% Similarity=0.213 Sum_probs=63.5
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCCCCCCCCCh---HHHHHHHHhc-----
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRPYKPDP---GPLLHICSTW----- 209 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~~~~~Kp~~---~~~~~~~~~l----- 209 (280)
..+.++|.+.++++++|+.|+-+..+|=+...-+-..++.+++. |+.++. +|.| .++.++++.+
T Consensus 38 ~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~Vi------ePhP~K~~ML~~llr~i~~er~ 111 (164)
T COG4996 38 REVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVI------EPHPYKFLMLSQLLREINTERN 111 (164)
T ss_pred eEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEe------cCCChhHHHHHHHHHHHHHhhc
Confidence 46789999999999999999999999977777777788999987 665443 3433 3555555543
Q ss_pred -CCCCCcEEEEcCCchhhHHHH
Q 023578 210 -EVQPNEVMMVGDSLKDDVACG 230 (280)
Q Consensus 210 -gi~~~~~v~iGDs~~~Di~~a 230 (280)
.+.|.+++|++|.. --+.-.
T Consensus 112 ~~ikP~~Ivy~DDR~-iH~~~I 132 (164)
T COG4996 112 QKIKPSEIVYLDDRR-IHFGNI 132 (164)
T ss_pred cccCcceEEEEeccc-ccHHHH
Confidence 47899999999988 544433
No 157
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=98.44 E-value=1.8e-05 Score=71.72 Aligned_cols=162 Identities=15% Similarity=0.071 Sum_probs=85.8
Q ss_pred ccEEEEeCCCcccCCCCCHHHHHHHHhCC-------------chHHHHHhcCCChhhHHH----HhhccChhHHHHHH-H
Q 023578 68 LRGVVFDMDGTLTVPVIDFPAMYRAVLGE-------------DEYKRVKAENPTGIDILH----HIESWSPDLQRHAY-Q 129 (280)
Q Consensus 68 ~k~iiFD~DGTL~d~~~~~~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~ 129 (280)
-+.++||+||||+.+...+...+.-.++. +....+............ .+.+++.++.+... .
T Consensus 22 ~~~~~FDfDGTLt~~~s~f~~Fll~A~~~~~~~r~lllll~~P~~~l~~~~~~~~~~~~~l~~~~f~G~~~~el~~~~r~ 101 (497)
T PLN02177 22 NQTVAADLDGTLLISRSAFPYYLLVALEAGSLLRALILLLSVPFVYFTYLFISESLAIKTFVFIAFAGLKIRDIELVSRS 101 (497)
T ss_pred ccEEEEecCCcccCCCCccHHHHHHHcccchHHHHHHHHHHhHHHHHHHhcCCchhHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 47899999999997555444333322221 111111111111111111 22344444443332 2
Q ss_pred HHHHHHHhcCCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHH-cCCc--------c--cceeeCCCCCCCC-
Q 023578 130 TIADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNR-FGIT--------F--SPALSREFRPYKP- 197 (280)
Q Consensus 130 ~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~-~g~~--------f--d~v~~~~~~~~Kp- 197 (280)
...++... .+.|.+.+ .++++|.. +++|...+.+++.+.+. +|++ . ++.+++......+
T Consensus 102 ~l~~f~~~-----~l~~~a~~---~~~~~g~~-vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c 172 (497)
T PLN02177 102 VLPKFYAE-----DVHPETWR---VFNSFGKR-YIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVL 172 (497)
T ss_pred HHHHHHHH-----hcCHHHHH---HHHhCCCE-EEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCC
Confidence 22233222 14555544 44567754 99999999999999976 7865 1 2233332110001
Q ss_pred C-hHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 198 D-PGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 198 ~-~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
. ..-...+.+.+|.+... +++|||. +|..+...|+-.. .|+
T Consensus 173 ~Ge~Kv~rl~~~~g~~~~~-~aYgDS~-sD~plL~~a~e~y-~V~ 214 (497)
T PLN02177 173 VGDHKRDAVLKEFGDALPD-LGLGDRE-TDHDFMSICKEGY-MVP 214 (497)
T ss_pred ccHHHHHHHHHHhCCCCce-EEEECCc-cHHHHHHhCCccE-EeC
Confidence 1 11223333556755444 8999999 9999999999653 444
No 158
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.44 E-value=4.6e-06 Score=79.84 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=48.8
Q ss_pred ChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCC--cEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhc
Q 023578 198 DPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGA--FTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEAN 275 (280)
Q Consensus 198 ~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~--~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~ 275 (280)
|..+++.+++ +++++.++++||+. ||..|.+.++. .++.+. .. ...|++++.+.+|+.++|+.+
T Consensus 658 KG~al~~ll~--~~~~d~vl~~GD~~-nDe~Mf~~~~~~~~~v~vG----~~-------~s~A~~~l~~~~eV~~~L~~l 723 (726)
T PRK14501 658 KGRAVRRLLE--AGPYDFVLAIGDDT-TDEDMFRALPETAITVKVG----PG-------ESRARYRLPSQREVRELLRRL 723 (726)
T ss_pred HHHHHHHHHh--cCCCCEEEEECCCC-ChHHHHHhcccCceEEEEC----CC-------CCcceEeCCCHHHHHHHHHHH
Confidence 4445556665 56788999999999 99999999742 233332 11 258899999999999999876
Q ss_pred cC
Q 023578 276 FD 277 (280)
Q Consensus 276 ~~ 277 (280)
.+
T Consensus 724 ~~ 725 (726)
T PRK14501 724 LD 725 (726)
T ss_pred hc
Confidence 53
No 159
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=7e-07 Score=67.10 Aligned_cols=135 Identities=13% Similarity=0.075 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhcCCCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHc---CCcccceeeCCCCCCCCChHHH
Q 023578 126 HAYQTIADFERQGLDRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRF---GITFSPALSREFRPYKPDPGPL 202 (280)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~---g~~fd~v~~~~~~~~Kp~~~~~ 202 (280)
++++..+++......+..+..++...|..++++ .+++.+|.......+..-..+ .+.++.+.--+ ...|
T Consensus 55 e~~k~~e~~ea~l~ke~l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~~~l~~q~ih~~~l~i~g-~h~K------ 126 (194)
T COG5663 55 EFWKWMEQTEAWLYKEALLAQLVKQVLPSLKEE-HRLIYITARKADLTRITYAWLFIQNIHYDHLEIVG-LHHK------ 126 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHHHHHHHhccchhhhhhhc-cccc------
Confidence 334444444333444456677888889999988 688888887766655443333 33355532110 0112
Q ss_pred HHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhccCC
Q 023578 203 LHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANFDL 278 (280)
Q Consensus 203 ~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~~~ 278 (280)
-.+++.++++ +++.|+..|-++.|+++|++++.++.+.+ +... ..+-..+.++.|..+++++.++=
T Consensus 127 V~~vrth~id----lf~ed~~~na~~iAk~~~~~vilins~yn--Rkp~----~~niiR~~~w~e~y~~vd~~~kR 192 (194)
T COG5663 127 VEAVRTHNID----LFFEDSHDNAGQIAKNAGIPVILINSPYN--RKPA----AKNIIRANNWAEAYEWVDSRLKR 192 (194)
T ss_pred chhhHhhccC----ccccccCchHHHHHHhcCCcEEEecCccc--ccch----HHHHHHHHhHHHHHHHHHHHhcc
Confidence 2567777877 89999997888889999999999997433 2211 23334467888888888877653
No 160
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.40 E-value=2.4e-06 Score=70.93 Aligned_cols=44 Identities=20% Similarity=0.439 Sum_probs=35.1
Q ss_pred CCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 196 KPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 196 Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
-.|...++.+++++++++++++++|||. ||+.|. ..+...|.|.
T Consensus 164 a~K~~Al~~L~~~~~~~~~~vl~aGDSg-ND~~mL-~~~~~~vvV~ 207 (247)
T PF05116_consen 164 ASKGAALRYLMERWGIPPEQVLVAGDSG-NDLEML-EGGDHGVVVG 207 (247)
T ss_dssp -SHHHHHHHHHHHHT--GGGEEEEESSG-GGHHHH-CCSSEEEE-T
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEeCCC-CcHHHH-cCcCCEEEEc
Confidence 3466789999999999999999999999 999999 6666777776
No 161
>PLN02580 trehalose-phosphatase
Probab=98.39 E-value=6.3e-06 Score=71.87 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=52.6
Q ss_pred CChHHHHHHHHhcCCCCCc---EEEEcCCchhhHHHHHH-----cCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHH
Q 023578 197 PDPGPLLHICSTWEVQPNE---VMMVGDSLKDDVACGKR-----AGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEV 268 (280)
Q Consensus 197 p~~~~~~~~~~~lgi~~~~---~v~iGDs~~~Di~~a~~-----~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl 268 (280)
.|...++.+++++|++..+ .+||||+. +|..|.+. .|+. |.|. .+.. ...|.|.+.+..|+
T Consensus 301 ~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~-TDedmF~~L~~~~~G~~-I~Vg----n~~~-----~t~A~y~L~dp~eV 369 (384)
T PLN02580 301 NKGKAVEFLLESLGLSNCDDVLPIYIGDDR-TDEDAFKVLREGNRGYG-ILVS----SVPK-----ESNAFYSLRDPSEV 369 (384)
T ss_pred CHHHHHHHHHHhcCCCcccceeEEEECCCc-hHHHHHHhhhccCCceE-EEEe----cCCC-----CccceEEcCCHHHH
Confidence 4667888999999987653 38999999 99999996 3554 4443 1211 25789999999999
Q ss_pred HHHHHhccC
Q 023578 269 LSILEANFD 277 (280)
Q Consensus 269 ~~~l~~~~~ 277 (280)
.++|+.+..
T Consensus 370 ~~~L~~L~~ 378 (384)
T PLN02580 370 MEFLKSLVT 378 (384)
T ss_pred HHHHHHHHH
Confidence 999987643
No 162
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.39 E-value=2.2e-06 Score=70.67 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=61.8
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchH---HHHHHHHHcCCc-ccceeeCCCC-CCCCChHHHHHH-HHhcC-CC
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKE---AVDLFHNRFGIT-FSPALSREFR-PYKPDPGPLLHI-CSTWE-VQ 212 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~---~~~~~l~~~g~~-fd~v~~~~~~-~~Kp~~~~~~~~-~~~lg-i~ 212 (280)
...++.|++.++.+.++++|++|+++||.... .....|.+.|+. .+.++-...+ ..+.+..-++.. .+++- -.
T Consensus 142 ~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eG 221 (275)
T TIGR01680 142 GEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEG 221 (275)
T ss_pred ccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcC
Confidence 35678999999999999999999999998653 344556677876 5555543221 222222222211 11110 01
Q ss_pred CCcEEEEcCCchhhHHHHHHcCCcEEEEcC
Q 023578 213 PNEVMMVGDSLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 213 ~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~ 242 (280)
..=+..|||.. +|+......+-++.-+.+
T Consensus 222 YrIv~~iGDq~-sDl~G~~~g~~RtFKLPN 250 (275)
T TIGR01680 222 YNIVGIIGDQW-NDLKGEHRGAIRSFKLPN 250 (275)
T ss_pred ceEEEEECCCH-HhccCCCccCcceecCCC
Confidence 12357899999 999655422346655553
No 163
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.37 E-value=9.7e-06 Score=75.02 Aligned_cols=46 Identities=9% Similarity=0.049 Sum_probs=41.3
Q ss_pred CCCChHHHHHHHHhcCCCCCcEEEE--cCCchhhHHHHHHcCCcEEEEc
Q 023578 195 YKPDPGPLLHICSTWEVQPNEVMMV--GDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 195 ~Kp~~~~~~~~~~~lgi~~~~~v~i--GDs~~~Di~~a~~~G~~~i~v~ 241 (280)
+-.|..+++.+++.+|++.++++.| ||+. ||+.|.+.+|..+++-.
T Consensus 611 gvdKG~AL~~L~e~~gI~~~eViafalGDs~-NDisMLe~Ag~gVAM~~ 658 (694)
T PRK14502 611 GNDKGKAIKILNELFRLNFGNIHTFGLGDSE-NDYSMLETVDSPILVQR 658 (694)
T ss_pred CCCHHHHHHHHHHHhCCCccceEEEEcCCcH-hhHHHHHhCCceEEEcC
Confidence 5577899999999999999999999 9999 99999999999877744
No 164
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.32 E-value=1.2e-05 Score=77.48 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=55.8
Q ss_pred CCCCChHHHHHHHH---hcCCCCCcEEEEcCCchhhHHHHHHcCC-------------cEEEEcCCCCCCccccccCCCC
Q 023578 194 PYKPDPGPLLHICS---TWEVQPNEVMMVGDSLKDDVACGKRAGA-------------FTCLLDETGRYSADDFTKSNLQ 257 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~---~lgi~~~~~v~iGDs~~~Di~~a~~~G~-------------~~i~v~~~~~~~~~~~~~~~~~ 257 (280)
.+-.|...++.+++ .+|+.++++++|||+. ||..|.+.++- .+|.|.. + ...
T Consensus 759 ~gvnKG~Al~~Ll~~~~~~g~~~d~vl~~GDD~-nDedMF~~~~~~~~g~~~~~~~~~~~v~VG~----~-------~S~ 826 (854)
T PLN02205 759 QGVSKGLVAKRLLSIMQERGMLPDFVLCIGDDR-SDEDMFEVITSSMAGPSIAPRAEVFACTVGQ----K-------PSK 826 (854)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCcccEEEEcCCc-cHHHHHHHhhhhccCCcccccccceeEEECC----C-------Ccc
Confidence 34456678888864 4689999999999999 99999998862 2333321 1 258
Q ss_pred CCEEEcCHHHHHHHHHhccCC
Q 023578 258 PDFRVSSLTEVLSILEANFDL 278 (280)
Q Consensus 258 ~d~v~~~~~dl~~~l~~~~~~ 278 (280)
|.|.+.+..|+.++|+.+.+.
T Consensus 827 A~y~L~d~~eV~~lL~~L~~~ 847 (854)
T PLN02205 827 AKYYLDDTAEIVRLMQGLASV 847 (854)
T ss_pred CeEecCCHHHHHHHHHHHHhc
Confidence 889999999999999987653
No 165
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.32 E-value=4.7e-06 Score=61.19 Aligned_cols=48 Identities=4% Similarity=0.018 Sum_probs=38.4
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchH---------------HHHHHHHHcCCcccceeeC
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKE---------------AVDLFHNRFGITFSPALSR 190 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~---------------~~~~~l~~~g~~fd~v~~~ 190 (280)
.+.+++.+.++.++++|+.++++|+.... .+...+++.++.+|.++.+
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~ 86 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVG 86 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeC
Confidence 47788999999999999999999997654 3456777888888777653
No 166
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=98.31 E-value=6.4e-06 Score=65.91 Aligned_cols=84 Identities=20% Similarity=0.208 Sum_probs=60.9
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHH----HHHHHHHcCCc---ccceeeCCCCCCCCChHHHHHHHHhcCCC
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEA----VDLFHNRFGIT---FSPALSREFRPYKPDPGPLLHICSTWEVQ 212 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~----~~~~l~~~g~~---fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~ 212 (280)
....+.||+.|+++..-++|..|..+||+..+. ...-+.++|++ -+.++-- ...|++..-++.+.+-
T Consensus 119 ~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llk--k~~k~Ke~R~~~v~k~---- 192 (274)
T COG2503 119 KKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLK--KDKKSKEVRRQAVEKD---- 192 (274)
T ss_pred cccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEe--eCCCcHHHHHHHHhhc----
Confidence 356899999999999999999999999987765 33455677776 2222222 3446777777777663
Q ss_pred CCcEEEEcCCchhhHHHH
Q 023578 213 PNEVMMVGDSLKDDVACG 230 (280)
Q Consensus 213 ~~~~v~iGDs~~~Di~~a 230 (280)
.+-++.|||+. .|....
T Consensus 193 ~~iVm~vGDNl-~DF~d~ 209 (274)
T COG2503 193 YKIVMLVGDNL-DDFGDN 209 (274)
T ss_pred cceeeEecCch-hhhcch
Confidence 44589999999 887543
No 167
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.26 E-value=8.7e-06 Score=76.23 Aligned_cols=114 Identities=13% Similarity=0.149 Sum_probs=84.0
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCC
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs 222 (280)
++.||+.+.+++|++.|++++++|+.....++.+.+.+|++ .+++. -.|+-...+++++.-....+.|+||+
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~--~v~a~------~~PedK~~~v~~lq~~g~~VamvGDG 517 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVD--DFIAE------ATPEDKIALIRQEQAEGKLVAMTGDG 517 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC--EEEcC------CCHHHHHHHHHHHHHcCCeEEEECCC
Confidence 66899999999999999999999999999999999999984 33331 12343444444444344579999999
Q ss_pred chhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEE--cCHHHHHHHHH
Q 023578 223 LKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRV--SSLTEVLSILE 273 (280)
Q Consensus 223 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~--~~~~dl~~~l~ 273 (280)
. ||..+.+++++..++- .+.+..+ ..+|+++ +++..+.+.++
T Consensus 518 ~-NDapAL~~AdvGiAm~-----~gt~~ak---eaadivLldd~~s~Iv~av~ 561 (675)
T TIGR01497 518 T-NDAPALAQADVGVAMN-----SGTQAAK---EAANMVDLDSDPTKLIEVVH 561 (675)
T ss_pred c-chHHHHHhCCEeEEeC-----CCCHHHH---HhCCEEECCCCHHHHHHHHH
Confidence 9 9999999999987762 2333333 3677776 45777766654
No 168
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=98.22 E-value=1.5e-06 Score=67.18 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=56.6
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---ccceeeCC-CCCCCCChHHHHHHHHhcCCCCCcE
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPALSRE-FRPYKPDPGPLLHICSTWEVQPNEV 216 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---fd~v~~~~-~~~~Kp~~~~~~~~~~~lgi~~~~~ 216 (280)
...+.||+.++|+.+.+. +.++|.|.+...+++.+++.+.-. |+.++..+ ....+. .. .+-++.+|-+.+++
T Consensus 34 ~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ldp~~~~~~~~~~r~~~~~~~~-~~--~KdL~~l~~~~~~v 109 (159)
T PF03031_consen 34 YVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALDPNGKLFSRRLYRDDCTFDKG-SY--IKDLSKLGRDLDNV 109 (159)
T ss_dssp EEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHTTTTSSEEEEEEGGGSEEETT-EE--E--GGGSSS-GGGE
T ss_pred eEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhhhhcccccccccccccccccc-cc--ccchHHHhhccccE
Confidence 456799999999999766 999999999999999999998863 77777644 221111 11 25677778788999
Q ss_pred EEEcCCchhh
Q 023578 217 MMVGDSLKDD 226 (280)
Q Consensus 217 v~iGDs~~~D 226 (280)
|+|+|++ .-
T Consensus 110 vivDD~~-~~ 118 (159)
T PF03031_consen 110 VIVDDSP-RK 118 (159)
T ss_dssp EEEES-G-GG
T ss_pred EEEeCCH-HH
Confidence 9999999 53
No 169
>PTZ00174 phosphomannomutase; Provisional
Probab=98.21 E-value=5.2e-06 Score=68.99 Aligned_cols=35 Identities=14% Similarity=0.069 Sum_probs=27.8
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHH
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHN 178 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~ 178 (280)
+-|...+.|++++++|+.++++|++....+...++
T Consensus 23 is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 23 ITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 44556778899999999999999988777666554
No 170
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.20 E-value=1.6e-05 Score=74.48 Aligned_cols=114 Identities=13% Similarity=0.102 Sum_probs=88.1
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCC
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs 222 (280)
++.||+.+.+++||+.|+++..+|+.+...+..+.+.+|++ .+++ .-.|+-...+.+.++-....+.|+||+
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~--~v~A------~~~PedK~~iV~~lQ~~G~~VaMtGDG 512 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVD--RFVA------ECKPEDKINVIREEQAKGHIVAMTGDG 512 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc--eEEc------CCCHHHHHHHHHHHHhCCCEEEEECCC
Confidence 56899999999999999999999999999999999999985 2322 223455566666666555668899999
Q ss_pred chhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEE--cCHHHHHHHHH
Q 023578 223 LKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRV--SSLTEVLSILE 273 (280)
Q Consensus 223 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~--~~~~dl~~~l~ 273 (280)
. ||..+.++|.+..++- .+.+-.+ ..+|.|. +++..+.+.++
T Consensus 513 v-NDAPALa~ADVGIAMg-----sGTdvAk---eAADiVLldd~ls~Iv~av~ 556 (673)
T PRK14010 513 T-NDAPALAEANVGLAMN-----SGTMSAK---EAANLIDLDSNPTKLMEVVL 556 (673)
T ss_pred h-hhHHHHHhCCEEEEeC-----CCCHHHH---HhCCEEEcCCCHHHHHHHHH
Confidence 9 9999999999977662 3333333 3788887 46777777664
No 171
>PLN02423 phosphomannomutase
Probab=98.18 E-value=9.8e-06 Score=67.19 Aligned_cols=42 Identities=12% Similarity=-0.004 Sum_probs=33.7
Q ss_pred CCCCChHHHHHHHHhcCCCCCcEEEEcC----CchhhHHHHHHcCCcEEEEc
Q 023578 194 PYKPDPGPLLHICSTWEVQPNEVMMVGD----SLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~~lgi~~~~~v~iGD----s~~~Di~~a~~~G~~~i~v~ 241 (280)
.+-.|..+++.++ +++++++||| +. ||++|.+.-|+.++.|.
T Consensus 186 ~gvnKg~al~~L~-----~~~e~~aFGD~~~~~~-ND~eMl~~~~~~~~~~~ 231 (245)
T PLN02423 186 QGWDKTYCLQFLE-----DFDEIHFFGDKTYEGG-NDHEIFESERTIGHTVT 231 (245)
T ss_pred CCCCHHHHHHHhc-----CcCeEEEEeccCCCCC-CcHHHHhCCCcceEEeC
Confidence 4455566666666 8999999999 68 99999988898888765
No 172
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=98.17 E-value=1.1e-05 Score=78.68 Aligned_cols=122 Identities=14% Similarity=0.047 Sum_probs=89.8
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCC-C----------------CCCCCChHHHHHH
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSRE-F----------------RPYKPDPGPLLHI 205 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~-~----------------~~~Kp~~~~~~~~ 205 (280)
++.|++.+.+++|++.|+++.++|+.....+..+.+.+|+.-+.+++++ . ....-.|+-...+
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K~~I 629 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFARLTPMHKERI 629 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHHHHH
Confidence 5679999999999999999999999999999999999999633344331 1 1223345555666
Q ss_pred HHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEE--cCHHHHHHHHH
Q 023578 206 CSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRV--SSLTEVLSILE 273 (280)
Q Consensus 206 ~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~--~~~~dl~~~l~ 273 (280)
.+.+.-...-+.|+||+. ||..+.++|.+..++- .+.+-.+ ..+|.|+ +++..+.+.++
T Consensus 630 V~~Lq~~G~vVam~GDGv-NDaPALk~ADVGIAmg-----~gtdvAk---eaADiVLldd~~~~I~~ai~ 690 (902)
T PRK10517 630 VTLLKREGHVVGFMGDGI-NDAPALRAADIGISVD-----GAVDIAR---EAADIILLEKSLMVLEEGVI 690 (902)
T ss_pred HHHHHHCCCEEEEECCCc-chHHHHHhCCEEEEeC-----CcCHHHH---HhCCEEEecCChHHHHHHHH
Confidence 666655556688999999 9999999999877662 2322233 4888888 56777766654
No 173
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=98.14 E-value=3.6e-05 Score=58.46 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=57.9
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHH---HHHHHHc-----CCcccceeeC----------CCCCCCCChHHHHH
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAV---DLFHNRF-----GITFSPALSR----------EFRPYKPDPGPLLH 204 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~---~~~l~~~-----g~~fd~v~~~----------~~~~~Kp~~~~~~~ 204 (280)
...||+.++++.+.++||++.-+|+.+.... +..++.. +++.-.++.+ |.-.. +|+.|+.
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~~sP~~l~~al~rEvi~~--~p~~fK~ 104 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVLLSPDSLFSALHREVISK--DPEEFKI 104 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEEECCcchhhhhhcccccc--ChHHHHH
Confidence 4679999999999999999999999775443 3445544 4431112222 32222 3444432
Q ss_pred -----HHHhcCC-CCCcEEEEcCCchhhHHHHHHcCCc
Q 023578 205 -----ICSTWEV-QPNEVMMVGDSLKDDVACGKRAGAF 236 (280)
Q Consensus 205 -----~~~~lgi-~~~~~v~iGDs~~~Di~~a~~~G~~ 236 (280)
+...+.- ...=...+|+.. +|+.+=+++|+.
T Consensus 105 ~~L~~l~~~f~~~~~pf~agfGN~~-tDv~aY~~vGip 141 (157)
T PF08235_consen 105 ACLRDLRALFPPDGNPFYAGFGNRS-TDVIAYKAVGIP 141 (157)
T ss_pred HHHHHHHHhcCCCCCeEEEecCCcH-HHHHHHHHcCCC
Confidence 3333321 122245799999 999999999995
No 174
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.13 E-value=7.4e-06 Score=68.41 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=34.7
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~ 183 (280)
..+.+.+.|++|+++|++++++|+.....+..+.+.+++.
T Consensus 19 ~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 19 SYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 3445677899999999999999999999999999999875
No 175
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.10 E-value=3.4e-05 Score=72.51 Aligned_cols=114 Identities=16% Similarity=0.167 Sum_probs=87.4
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCC
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs 222 (280)
++.||+.+.+++||+.|++++++|+.+...++.+.+.+|++ .+++ .-.|+-...+.++++-...-+.|+||+
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId--~v~A------~~~PedK~~iV~~lQ~~G~~VaMtGDG 516 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVD--DFLA------EATPEDKLALIRQEQAEGRLVAMTGDG 516 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc--EEEc------cCCHHHHHHHHHHHHHcCCeEEEECCC
Confidence 56899999999999999999999999999999999999985 3332 123455556666665555668999999
Q ss_pred chhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEc--CHHHHHHHHH
Q 023578 223 LKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVS--SLTEVLSILE 273 (280)
Q Consensus 223 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~--~~~dl~~~l~ 273 (280)
. ||..+.+++.+..++- .+.+-.+ ..+|.++- ++..+.+.++
T Consensus 517 v-NDAPALa~ADVGIAMg-----sGTdvAk---eAADiVLldd~~s~Iv~av~ 560 (679)
T PRK01122 517 T-NDAPALAQADVGVAMN-----SGTQAAK---EAGNMVDLDSNPTKLIEVVE 560 (679)
T ss_pred c-chHHHHHhCCEeEEeC-----CCCHHHH---HhCCEEEeCCCHHHHHHHHH
Confidence 9 9999999999987762 3333333 37777774 6777777765
No 176
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=98.06 E-value=2.1e-05 Score=76.56 Aligned_cols=122 Identities=16% Similarity=0.059 Sum_probs=87.3
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCC-C----------------CCCCCChHHHHHH
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSRE-F----------------RPYKPDPGPLLHI 205 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~-~----------------~~~Kp~~~~~~~~ 205 (280)
++.|++.+.+++|++.|+++.++|+.....+..+.+.+|+.-+.++++. . ....-.|+-...+
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K~~i 594 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIFARLTPMQKSRI 594 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHHHHH
Confidence 5679999999999999999999999999999999999998522233321 1 1122334555555
Q ss_pred HHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEE--cCHHHHHHHHH
Q 023578 206 CSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRV--SSLTEVLSILE 273 (280)
Q Consensus 206 ~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~--~~~~dl~~~l~ 273 (280)
.+.+.-....+.|+||+. ||..+.++|.+..++- .+.+-.+ ..+|.|+ +++..+...++
T Consensus 595 V~~lq~~G~vVam~GDGv-NDapALk~AdVGIAmg-----~gtdvAk---~aADiVLldd~~~~I~~ai~ 655 (867)
T TIGR01524 595 IGLLKKAGHTVGFLGDGI-NDAPALRKADVGISVD-----TAADIAK---EASDIILLEKSLMVLEEGVI 655 (867)
T ss_pred HHHHHhCCCEEEEECCCc-ccHHHHHhCCEEEEeC-----CccHHHH---HhCCEEEecCChHHHHHHHH
Confidence 555554456788999999 9999999999987662 2222223 4788877 56766666554
No 177
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.02 E-value=4.8e-05 Score=71.67 Aligned_cols=114 Identities=17% Similarity=0.233 Sum_probs=84.9
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCC
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs 222 (280)
++.|+..+.+++|++.|++++++|+.+...++.+.+.+|++ .+++.- .|+-.....+++.-....+.||||+
T Consensus 537 ~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId--~v~Ael------lPedK~~~V~~l~~~g~~VamVGDG 608 (713)
T COG2217 537 ELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGID--EVRAEL------LPEDKAEIVRELQAEGRKVAMVGDG 608 (713)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChH--hheccC------CcHHHHHHHHHHHhcCCEEEEEeCC
Confidence 67899999999999999999999999999999999999984 333221 2244455556665445689999999
Q ss_pred chhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEE--cCHHHHHHHHH
Q 023578 223 LKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRV--SSLTEVLSILE 273 (280)
Q Consensus 223 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~--~~~~dl~~~l~ 273 (280)
. ||..+...+.+..++- .|.+-..+ .+|.++ +++..+...++
T Consensus 609 I-NDAPALA~AdVGiAmG-----~GtDvA~e---aADvvL~~~dL~~v~~ai~ 652 (713)
T COG2217 609 I-NDAPALAAADVGIAMG-----SGTDVAIE---AADVVLMRDDLSAVPEAID 652 (713)
T ss_pred c-hhHHHHhhcCeeEeec-----CCcHHHHH---hCCEEEecCCHHHHHHHHH
Confidence 9 9999999998876662 23333332 666665 45777777654
No 178
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=98.02 E-value=2.4e-05 Score=76.41 Aligned_cols=122 Identities=14% Similarity=0.056 Sum_probs=89.9
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCC-C----------------CCCCCChHHHHHH
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSRE-F----------------RPYKPDPGPLLHI 205 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~-~----------------~~~Kp~~~~~~~~ 205 (280)
++.|++.+.+++|++.|+++.++|+.....+..+.+.+|+.-+.++++. . ....-.|+-...+
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~~i 629 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKSRV 629 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHHHH
Confidence 5679999999999999999999999999999999999998522233321 1 1223345556666
Q ss_pred HHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEE--cCHHHHHHHHH
Q 023578 206 CSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRV--SSLTEVLSILE 273 (280)
Q Consensus 206 ~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~--~~~~dl~~~l~ 273 (280)
.+.+.-...-+.|+||+. ||..+.++|.+..++- .+.+-.+ ..+|.|+ +++..+...++
T Consensus 630 V~~Lq~~G~vVamtGDGv-NDaPALk~ADVGIAmg-----~gtdvAk---eaADiVLldd~f~~Iv~ai~ 690 (903)
T PRK15122 630 LKALQANGHTVGFLGDGI-NDAPALRDADVGISVD-----SGADIAK---ESADIILLEKSLMVLEEGVI 690 (903)
T ss_pred HHHHHhCCCEEEEECCCc-hhHHHHHhCCEEEEeC-----cccHHHH---HhcCEEEecCChHHHHHHHH
Confidence 666655556789999999 9999999999876652 2332233 4888888 57777777664
No 179
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=98.01 E-value=3.7e-05 Score=68.71 Aligned_cols=102 Identities=18% Similarity=0.130 Sum_probs=69.9
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHH-cCC------c----ccceeeCCCC---------------
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNR-FGI------T----FSPALSREFR--------------- 193 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~-~g~------~----fd~v~~~~~~--------------- 193 (280)
..+...|.+..+|+.||++|.++.++||+.-+++...++. +|- + ||.|++...+
T Consensus 180 kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~ 259 (448)
T PF05761_consen 180 KYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDT 259 (448)
T ss_dssp CCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEET
T ss_pred HHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEEC
Confidence 3455578899999999999999999999999999887754 444 3 8888753210
Q ss_pred -CCCC---------------ChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHc-CCcEEEEc
Q 023578 194 -PYKP---------------DPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRA-GAFTCLLD 241 (280)
Q Consensus 194 -~~Kp---------------~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~-G~~~i~v~ 241 (280)
.++. ...-...+++.+|+...+++||||+...|+...+.. ||+|++|-
T Consensus 260 ~~g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii 324 (448)
T PF05761_consen 260 ETGKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAII 324 (448)
T ss_dssp TTSSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-
T ss_pred CCCccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEe
Confidence 0110 112356778889999999999999998999988887 99999986
No 180
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=98.00 E-value=3.7e-05 Score=75.68 Aligned_cols=123 Identities=13% Similarity=0.108 Sum_probs=89.3
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc-c-cceeeCC-----------------CCCCCCChHHHH
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-F-SPALSRE-----------------FRPYKPDPGPLL 203 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-f-d~v~~~~-----------------~~~~Kp~~~~~~ 203 (280)
++.|++.+.++.|++.|++++++|+.....+..+.+..|+. - ..+++++ .....-.|+-..
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K~ 658 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDKQ 658 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHHH
Confidence 56799999999999999999999999999999999999985 1 1233221 011233445555
Q ss_pred HHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEc--CHHHHHHHHH
Q 023578 204 HICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVS--SLTEVLSILE 273 (280)
Q Consensus 204 ~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~--~~~dl~~~l~ 273 (280)
.+.+.+.-....+.|+||+. ||..+.++|.+..++- ..+.+-.+ ..+|+++. +|..+...+.
T Consensus 659 ~iV~~lq~~g~vVam~GDGv-NDapALk~AdVGIAmg----~~gtdvAk---~aADivL~dd~f~~I~~~i~ 722 (941)
T TIGR01517 659 LLVLMLKDMGEVVAVTGDGT-NDAPALKLADVGFSMG----ISGTEVAK---EASDIILLDDNFASIVRAVK 722 (941)
T ss_pred HHHHHHHHCCCEEEEECCCC-chHHHHHhCCcceecC----CCccHHHH---HhCCEEEecCCHHHHHHHHH
Confidence 55555554455789999999 9999999999877652 12332233 47899887 7888887764
No 181
>PLN02645 phosphoglycolate phosphatase
Probab=98.00 E-value=4.9e-05 Score=65.35 Aligned_cols=89 Identities=11% Similarity=0.007 Sum_probs=67.1
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCchHH---HHHHHHHcCCc--ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcE
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEA---VDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEV 216 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~---~~~~l~~~g~~--fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~ 216 (280)
-.++||+.++|+.|+++|++++++||+.... +...++.+|+. ++.++++. ......+++.+....+.
T Consensus 43 ~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~--------~~~~~~l~~~~~~~~~~ 114 (311)
T PLN02645 43 DKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSS--------FAAAAYLKSINFPKDKK 114 (311)
T ss_pred CccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehH--------HHHHHHHHhhccCCCCE
Confidence 3578999999999999999999999987333 33445778887 56666542 24455666666655556
Q ss_pred EEEcCCchhhHHHHHHcCCcEEE
Q 023578 217 MMVGDSLKDDVACGKRAGAFTCL 239 (280)
Q Consensus 217 v~iGDs~~~Di~~a~~~G~~~i~ 239 (280)
++++++. .+.+.++.+|+.++.
T Consensus 115 V~viG~~-~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 115 VYVIGEE-GILEELELAGFQYLG 136 (311)
T ss_pred EEEEcCH-HHHHHHHHCCCEEec
Confidence 8888888 899999999998764
No 182
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.96 E-value=4.6e-05 Score=66.94 Aligned_cols=88 Identities=10% Similarity=0.131 Sum_probs=69.6
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCC-----CCCCCCChHHHHHHHHhcCCCCCcEEE
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSRE-----FRPYKPDPGPLLHICSTWEVQPNEVMM 218 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~-----~~~~Kp~~~~~~~~~~~lgi~~~~~v~ 218 (280)
++-...+.+..|+++|+-++|+|-+....++..+++.. +.++..+ ...-.||.+-+.++++++|+..+..+|
T Consensus 256 ~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~khp---~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvF 332 (574)
T COG3882 256 AFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKHP---DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVF 332 (574)
T ss_pred hHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhCC---CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEE
Confidence 34445678999999999999999888888888887754 2222211 123468889999999999999999999
Q ss_pred EcCCchhhHHHHHHcCC
Q 023578 219 VGDSLKDDVACGKRAGA 235 (280)
Q Consensus 219 iGDs~~~Di~~a~~~G~ 235 (280)
++|++ ...+-.+.-+-
T Consensus 333 iDD~p-~ErE~vk~~~~ 348 (574)
T COG3882 333 IDDNP-AERELVKRELP 348 (574)
T ss_pred ecCCH-HHHHHHHhcCc
Confidence 99999 99998888775
No 183
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=97.95 E-value=4.5e-05 Score=73.24 Aligned_cols=121 Identities=13% Similarity=0.111 Sum_probs=86.9
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCC-C----------------------CCCCCCh
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSRE-F----------------------RPYKPDP 199 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~-~----------------------~~~Kp~~ 199 (280)
++.|++.+.++.|++.|+++.++|+.....++.+.+.+|+. +.+++++ . ...+-.|
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr~~P 520 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLG-TNIYTADVLLKGDNRDDLPSGELGEMVEDADGFAEVFP 520 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC-CCCcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEecCH
Confidence 67899999999999999999999999999999999999985 1121111 0 1223344
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEc--CHHHHHHHHH
Q 023578 200 GPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVS--SLTEVLSILE 273 (280)
Q Consensus 200 ~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~--~~~dl~~~l~ 273 (280)
+-...+.+.+.-....+.|+||+. ||..+.++|.+..++ . .+.+-.+ ..+|.++- ++..+...++
T Consensus 521 e~K~~iV~~lq~~G~~VamvGDGv-NDapAL~~AdVGIAm-~----~gtdvAk---eaADivLl~d~l~~I~~ai~ 587 (755)
T TIGR01647 521 EHKYEIVEILQKRGHLVGMTGDGV-NDAPALKKADVGIAV-A----GATDAAR---SAADIVLTEPGLSVIVDAIL 587 (755)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCc-ccHHHHHhCCeeEEe-c----CCcHHHH---HhCCEEEEcCChHHHHHHHH
Confidence 555566666655556799999999 999999999987665 2 2222223 36777764 5666666554
No 184
>PLN03017 trehalose-phosphatase
Probab=97.92 E-value=0.0003 Score=61.04 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=50.9
Q ss_pred CChHHHHHHHHhcCCCC---CcEEEEcCCchhhHHHHHHcC----CcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHH
Q 023578 197 PDPGPLLHICSTWEVQP---NEVMMVGDSLKDDVACGKRAG----AFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVL 269 (280)
Q Consensus 197 p~~~~~~~~~~~lgi~~---~~~v~iGDs~~~Di~~a~~~G----~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~ 269 (280)
.|...++.+++.+|... .-.+|+||.. +|-.+.+.+. -..|.|.. ... ...|.|.+.+..|+.
T Consensus 283 dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~-TDEDaF~~L~~~~~G~gI~VG~----~~k-----~T~A~y~L~dp~eV~ 352 (366)
T PLN03017 283 DKGKALEFLLESLGFGNTNNVFPVYIGDDR-TDEDAFKMLRDRGEGFGILVSK----FPK-----DTDASYSLQDPSEVM 352 (366)
T ss_pred CHHHHHHHHHHhcccccCCCceEEEeCCCC-ccHHHHHHHhhcCCceEEEECC----CCC-----CCcceEeCCCHHHHH
Confidence 35567788888887642 2489999999 9998888762 13455542 011 258999999999999
Q ss_pred HHHHhccC
Q 023578 270 SILEANFD 277 (280)
Q Consensus 270 ~~l~~~~~ 277 (280)
++|..+..
T Consensus 353 ~fL~~L~~ 360 (366)
T PLN03017 353 DFLARLVE 360 (366)
T ss_pred HHHHHHHH
Confidence 99987754
No 185
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.92 E-value=0.00014 Score=59.92 Aligned_cols=85 Identities=14% Similarity=0.070 Sum_probs=65.0
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCCCCC--------------------------
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRP-------------------------- 194 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~~~~-------------------------- 194 (280)
...|.+.+.|..|++.|..+++=|-|.++++...++++++. ||.++++....
T Consensus 142 Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd~ii~~G~~~~~~~~~~~~d~~~~~~f~~~~FylDv 221 (297)
T PF05152_consen 142 IRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFDIIICGGNKAGEYNSRVIVDRQYKVIFVSKPFYLDV 221 (297)
T ss_pred cCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccEEEEeCCccCCcCCccceeecccceEEeccceEEeC
Confidence 35788899999999999999999999999999999999998 99998742110
Q ss_pred ----CCC-ChHHHHHHHHhcCCCCC-cEEEEcCCchhhH
Q 023578 195 ----YKP-DPGPLLHICSTWEVQPN-EVMMVGDSLKDDV 227 (280)
Q Consensus 195 ----~Kp-~~~~~~~~~~~lgi~~~-~~v~iGDs~~~Di 227 (280)
+-| .|......+++.|+..- .+--|+|-..||+
T Consensus 222 ~~~~~LPKSPrVVL~yL~k~gvny~KtiTLVDDL~~Nn~ 260 (297)
T PF05152_consen 222 TNVNNLPKSPRVVLWYLRKKGVNYFKTITLVDDLKSNNY 260 (297)
T ss_pred CcCCCCCCCCeehHHHHHHcCCceeeeEEEeccCcccCc
Confidence 012 36677888888888653 4456777664554
No 186
>PLN02151 trehalose-phosphatase
Probab=97.90 E-value=0.00023 Score=61.52 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=48.7
Q ss_pred CChHHHHHHHHhcCCCCC---cEEEEcCCchhhHHHHHHc-----CCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHH
Q 023578 197 PDPGPLLHICSTWEVQPN---EVMMVGDSLKDDVACGKRA-----GAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEV 268 (280)
Q Consensus 197 p~~~~~~~~~~~lgi~~~---~~v~iGDs~~~Di~~a~~~-----G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl 268 (280)
.|...+..++++++.... -.+|+||.. +|-.+.+.+ |+ .|.|.. +. ....|+|.+.+..|+
T Consensus 269 dKG~Av~~Ll~~~~~~~~~~~~pvyiGDD~-TDEDaF~~L~~~~~G~-gI~Vg~----~~-----k~T~A~y~L~dp~eV 337 (354)
T PLN02151 269 DKGKALEFLLESLGYANCTDVFPIYIGDDR-TDEDAFKILRDKKQGL-GILVSK----YA-----KETNASYSLQEPDEV 337 (354)
T ss_pred CHHHHHHHHHHhcccccCCCCeEEEEcCCC-cHHHHHHHHhhcCCCc-cEEecc----CC-----CCCcceEeCCCHHHH
Confidence 355667777777765432 279999999 999888765 32 344431 11 135899999999999
Q ss_pred HHHHHhccC
Q 023578 269 LSILEANFD 277 (280)
Q Consensus 269 ~~~l~~~~~ 277 (280)
.++|..+..
T Consensus 338 ~~~L~~L~~ 346 (354)
T PLN02151 338 MEFLERLVE 346 (354)
T ss_pred HHHHHHHHH
Confidence 999887643
No 187
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=97.88 E-value=9.1e-05 Score=73.42 Aligned_cols=123 Identities=16% Similarity=0.139 Sum_probs=89.3
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc-c-----------cceeeCC-C----------------C
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-F-----------SPALSRE-F----------------R 193 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-f-----------d~v~~~~-~----------------~ 193 (280)
++.|++.+.++.|++.|++++++|+.....+..+.+..|+. - ..++++. . .
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~V 725 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCLV 725 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCeE
Confidence 67899999999999999999999999999999999999984 1 1233332 1 1
Q ss_pred CCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcC--HHHHHHH
Q 023578 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSS--LTEVLSI 271 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~--~~dl~~~ 271 (280)
...-.|+-...+.+.+.-....+.|+||+. ||..+.+.|++..++-. .+.+-.+ ..+|+++.+ |..+...
T Consensus 726 ~ar~sP~~K~~iV~~lq~~g~~Vam~GDGv-NDapaLk~AdVGIAmg~----~gt~vak---~aADivl~dd~f~~I~~~ 797 (1053)
T TIGR01523 726 IARCAPQTKVKMIEALHRRKAFCAMTGDGV-NDSPSLKMANVGIAMGI----NGSDVAK---DASDIVLSDDNFASILNA 797 (1053)
T ss_pred EEecCHHHHHHHHHHHHhcCCeeEEeCCCc-chHHHHHhCCccEecCC----CccHHHH---HhcCEEEecCCHHHHHHH
Confidence 122344555555665554456789999999 99999999999876521 2222222 488999854 8888777
Q ss_pred HH
Q 023578 272 LE 273 (280)
Q Consensus 272 l~ 273 (280)
+.
T Consensus 798 i~ 799 (1053)
T TIGR01523 798 IE 799 (1053)
T ss_pred HH
Confidence 64
No 188
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.83 E-value=0.00059 Score=50.82 Aligned_cols=92 Identities=16% Similarity=0.233 Sum_probs=59.8
Q ss_pred ccCcCHHHHHHHhhhC-C-CeEEEEeCC--------chHHHHHHHHHcCCc-ccceeeCCCCCCCCChHHHHHHHH-hcC
Q 023578 143 QIMPGTAQLCGFLDSK-K-IRRGLITRN--------IKEAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICS-TWE 210 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~-g-~~i~ivS~~--------~~~~~~~~l~~~g~~-fd~v~~~~~~~~Kp~~~~~~~~~~-~lg 210 (280)
...|....-+++++.. | ..+.++||+ ..+.++.+.++.|+. .. ....|| ..-....+ .+|
T Consensus 61 ~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlR------Hs~kKP--~ct~E~~~y~~~ 132 (190)
T KOG2961|consen 61 AIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLR------HSVKKP--ACTAEEVEYHFG 132 (190)
T ss_pred ccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceEe------ecccCC--CccHHHHHHHhC
Confidence 4555555556666653 3 578899883 223345555677765 11 112244 22223222 344
Q ss_pred ----CCCCcEEEEcCCchhhHHHHHHcCCcEEEEcC
Q 023578 211 ----VQPNEVMMVGDSLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 211 ----i~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~ 242 (280)
..++|++||||..-.|+-+|...|-..+|..+
T Consensus 133 Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~ 168 (190)
T KOG2961|consen 133 NSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEP 168 (190)
T ss_pred CcccCChhHeEEEccchhhhHhhhhhccceeEEecc
Confidence 57899999999998999999999999999875
No 189
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=97.81 E-value=4.9e-05 Score=64.95 Aligned_cols=94 Identities=17% Similarity=0.184 Sum_probs=69.1
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCC------------chHHHHHHHHHcCCcccceee-CCCCCCCCChHHHHHHHHhc
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRN------------IKEAVDLFHNRFGITFSPALS-REFRPYKPDPGPLLHICSTW 209 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~------------~~~~~~~~l~~~g~~fd~v~~-~~~~~~Kp~~~~~~~~~~~l 209 (280)
.++|.+..=++.|.+.||.++|.||. ...-++.+...++++|..... .....+||...+++...+..
T Consensus 104 ~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl~vPi~~~~A~~~~~yRKP~tGMwe~~~~~~ 183 (422)
T KOG2134|consen 104 ILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANLGVPIQLLAAIIKGKYRKPSTGMWEFLKRLE 183 (422)
T ss_pred eeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhcCCceEEeeeccCCcccCcchhHHHHHHHHh
Confidence 56788888899999999999999983 223356677778887554333 23458899999999888776
Q ss_pred C----CCCCcEEEEcC---------------CchhhHHHHHHcCCcE
Q 023578 210 E----VQPNEVMMVGD---------------SLKDDVACGKRAGAFT 237 (280)
Q Consensus 210 g----i~~~~~v~iGD---------------s~~~Di~~a~~~G~~~ 237 (280)
+ +.-..+.|+|| |. .|+.-|.++|+.+
T Consensus 184 nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~-~D~~FAaN~gvkF 229 (422)
T KOG2134|consen 184 NDSVEISEKASIFVGDAAGRPLDALRRKKDHSS-ADRKFAANAGVKF 229 (422)
T ss_pred hccceeeechhhhhhhhccCccccccCcccccH-HHHHHHHhcCCcc
Confidence 4 34445568877 34 6899999999865
No 190
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=97.73 E-value=0.00026 Score=56.19 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=58.1
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc----cc--ceeeC---------CCC--CCCCChHHHHHH
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT----FS--PALSR---------EFR--PYKPDPGPLLHI 205 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~----fd--~v~~~---------~~~--~~Kp~~~~~~~~ 205 (280)
...|++.++|+.+.++ +.|+|-|.+...+++.++..+|+. +. .+... ..+ .-|+ +..+
T Consensus 45 ~kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKd----L~~l 119 (195)
T TIGR02245 45 LMRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKP----LGVI 119 (195)
T ss_pred EeCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEee----cHHh
Confidence 4689999999999996 999999999999999999988753 11 11111 011 1222 2223
Q ss_pred HHhcC--CCCCcEEEEcCCchhhHHHHHHcCC
Q 023578 206 CSTWE--VQPNEVMMVGDSLKDDVACGKRAGA 235 (280)
Q Consensus 206 ~~~lg--i~~~~~v~iGDs~~~Di~~a~~~G~ 235 (280)
-+++| .+..++++|+|++ ....+=-.-|+
T Consensus 120 w~~l~~~~~~~ntiiVDd~p-~~~~~~P~N~i 150 (195)
T TIGR02245 120 WALLPEFYSMKNTIMFDDLR-RNFLMNPQNGL 150 (195)
T ss_pred hhhcccCCCcccEEEEeCCH-HHHhcCCCCcc
Confidence 33554 3778999999999 54443333344
No 191
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.72 E-value=0.0023 Score=51.04 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=75.9
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc----------cccee-------------------eCC
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT----------FSPAL-------------------SRE 191 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~----------fd~v~-------------------~~~ 191 (280)
..++.||+.+.++.|.+. +.-+++|.+...++++....+|++ +|.+- +++
T Consensus 81 sa~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~Prg~~~~Te~~lD~~~~PeeeR~E~L~~~~~~~~~~ge 159 (315)
T COG4030 81 SAKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGVPRGELHGTEVDLDSIAVPEEEREELLSIIDVIASLSGE 159 (315)
T ss_pred hcccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCCCccccccccccCccccCChHHHHHHHHhcCccccccHH
Confidence 468999999999999987 666677777778888888888874 22110 000
Q ss_pred -----------------C---------CCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcC-CcEEEEcCCC
Q 023578 192 -----------------F---------RPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAG-AFTCLLDETG 244 (280)
Q Consensus 192 -----------------~---------~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G-~~~i~v~~~~ 244 (280)
. .-+--+....+..++.-+++-. +++||||. +|++|.+.+. -....|..
T Consensus 160 elfe~lDe~F~rLip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~d~s-a~~VGDSI-tDv~ml~~~rgrGglAvaF-- 235 (315)
T COG4030 160 ELFEKLDELFSRLIPSEVGKIVESVKAVGGGEKAKIMEGYCELEGIDFS-AVVVGDSI-TDVKMLEAARGRGGLAVAF-- 235 (315)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHhhhhccCcchhHHHHHHHhhcCCCcc-eeEecCcc-cchHHHHHhhccCceEEEe--
Confidence 0 0011123344445555555433 89999999 9999998873 22233332
Q ss_pred CCCccccccCCCCCCEEEcCHHHHHHHHHh
Q 023578 245 RYSADDFTKSNLQPDFRVSSLTEVLSILEA 274 (280)
Q Consensus 245 ~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~ 274 (280)
+|++-... .+....+..+...+..+|+-
T Consensus 236 -NGNeYal~-eAdVAvisp~~~a~~pviel 263 (315)
T COG4030 236 -NGNEYALK-EADVAVISPTAMAEAPVIEL 263 (315)
T ss_pred -cCCccccc-ccceEEeccchhhhhHHHHH
Confidence 23332221 24444555566666666653
No 192
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=97.71 E-value=0.00019 Score=71.00 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=86.7
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---cc-----------------------ceeeCC-C---
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FS-----------------------PALSRE-F--- 192 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---fd-----------------------~v~~~~-~--- 192 (280)
++.|++.+.+++++++|++++++|+.....+..+.+.+|+. .+ .++++. .
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~l 647 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDM 647 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhhC
Confidence 56889999999999999999999999999999999999883 10 133321 1
Q ss_pred ---------------CCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCC
Q 023578 193 ---------------RPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQ 257 (280)
Q Consensus 193 ---------------~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~ 257 (280)
...+-.|+-...+.+.+.-...-+.++||+. ||+.|.++|.+..++-. .|.+-.+ ..
T Consensus 648 ~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~-ND~paLk~AdVGiamg~----~G~~vak---~a 719 (997)
T TIGR01106 648 TSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGV-NDSPALKKADIGVAMGI----AGSDVSK---QA 719 (997)
T ss_pred CHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCc-ccHHHHhhCCcceecCC----cccHHHH---Hh
Confidence 1122334444445555544445688999999 99999999999876521 2232223 47
Q ss_pred CCEEEcC--HHHHHHHHH
Q 023578 258 PDFRVSS--LTEVLSILE 273 (280)
Q Consensus 258 ~d~v~~~--~~dl~~~l~ 273 (280)
+|+++.+ |..+...+.
T Consensus 720 ADivL~dd~f~~Iv~ai~ 737 (997)
T TIGR01106 720 ADMILLDDNFASIVTGVE 737 (997)
T ss_pred hceEEecCCHHHHHHHHH
Confidence 8998877 777777654
No 193
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=97.48 E-value=0.0076 Score=54.23 Aligned_cols=84 Identities=10% Similarity=0.040 Sum_probs=53.0
Q ss_pred HHHHhhhCCCeEEEEeCCchHHHHHHHHH-cCCcccceeeCCC-----C------CCCCChHH-HHHHHHhcCCCCCcEE
Q 023578 151 LCGFLDSKKIRRGLITRNIKEAVDLFHNR-FGITFSPALSREF-----R------PYKPDPGP-LLHICSTWEVQPNEVM 217 (280)
Q Consensus 151 ~l~~L~~~g~~i~ivS~~~~~~~~~~l~~-~g~~fd~v~~~~~-----~------~~Kp~~~~-~~~~~~~lgi~~~~~v 217 (280)
.++..+..| +++++|..++.+++..++. +|.+ .|++.|. + .++...+. ...+.+.+|- ....+
T Consensus 101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D--~VvGTEL~v~~~G~~TG~~~G~n~~ek~~~rl~~~~g~-~~~~v 176 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRAD--EVIGSELVVNRFGFATGFIRGTDVDQSVANRVANLFVD-ERPQL 176 (498)
T ss_pred HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCc--eEEeeeEEEeeccEEEEEEecCccHHHHHHHHHHHhCc-cCcee
Confidence 556667788 9999999999999999988 8864 3333221 0 12222333 3444455663 24477
Q ss_pred EEcCCchhhHHHHHHcCCcEEEEc
Q 023578 218 MVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 218 ~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
-+||+. .|-.-..-|. -+.+.
T Consensus 177 g~~~~~-~~~~f~~~ck--~~~~~ 197 (498)
T PLN02499 177 GLGRIS-ASSSFLSLCK--EQIHP 197 (498)
T ss_pred cccCCc-ccchhhhhCc--eEEec
Confidence 888888 7777666544 44443
No 194
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00073 Score=63.97 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=80.7
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCC
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs 222 (280)
.+.|++...++.||+.|++++.+|+.+...++.+.+..| ++.+++.-....| .+.++. +.-....+.||||+
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VG--i~~V~aev~P~~K--~~~Ik~----lq~~~~~VaMVGDG 794 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVG--IDNVYAEVLPEQK--AEKIKE----IQKNGGPVAMVGDG 794 (951)
T ss_pred ccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhC--cceEEeccCchhh--HHHHHH----HHhcCCcEEEEeCC
Confidence 568999999999999999999999999999999999999 4666553333222 234444 43344679999999
Q ss_pred chhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEE--cCHHHHHHHHH
Q 023578 223 LKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRV--SSLTEVLSILE 273 (280)
Q Consensus 223 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~--~~~~dl~~~l~ 273 (280)
. ||-.+...+.+..+... +.+-.- ..+|+++ +++.+++..++
T Consensus 795 I-NDaPALA~AdVGIaig~-----gs~vAi---eaADIVLmrn~L~~v~~ai~ 838 (951)
T KOG0207|consen 795 I-NDAPALAQADVGIAIGA-----GSDVAI---EAADIVLMRNDLRDVPFAID 838 (951)
T ss_pred C-CccHHHHhhccceeecc-----ccHHHH---hhCCEEEEccchhhhHHHHH
Confidence 9 99999988887655533 211111 2555544 56677666654
No 195
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.43 E-value=0.00074 Score=66.28 Aligned_cols=124 Identities=15% Similarity=0.099 Sum_probs=87.9
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCccc----ceeeCCC-C----------------CCCCChH
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFS----PALSREF-R----------------PYKPDPG 200 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd----~v~~~~~-~----------------~~Kp~~~ 200 (280)
-+|.|++.+.++.|+++|+++..+|+-....+..+.+..|+.-+ .+++|.. . ..+-.|+
T Consensus 546 Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~ 625 (917)
T COG0474 546 DPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPE 625 (917)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHH
Confidence 37889999999999999999999999999999999999998722 2544421 1 2233455
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEE--cCHHHHHHHHH
Q 023578 201 PLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRV--SSLTEVLSILE 273 (280)
Q Consensus 201 ~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~--~~~~dl~~~l~ 273 (280)
-..++.+.+.-.-.-+.|.||+. ||..|.++|.+...+.. .|.+..++ .+|++. +++.-+...+.
T Consensus 626 qK~~IV~~lq~~g~vVamtGDGv-NDapALk~ADVGIamg~----~Gtdaak~---Aadivl~dd~~~~i~~av~ 692 (917)
T COG0474 626 QKARIVEALQKSGHVVAMTGDGV-NDAPALKAADVGIAMGG----EGTDAAKE---AADIVLLDDNFATIVLAVV 692 (917)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCc-hhHHHHHhcCccEEecc----cHHHHHHh---hcceEeecCcHHHHHHHHH
Confidence 55566666655556688999999 99999999999876653 33333332 455544 34454554443
No 196
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=97.31 E-value=0.0023 Score=63.92 Aligned_cols=121 Identities=19% Similarity=0.189 Sum_probs=82.7
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc-cc-ceeeCCC----------------------------
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FS-PALSREF---------------------------- 192 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-fd-~v~~~~~---------------------------- 192 (280)
++.|++.+.++.|++.|++++++|+.....+..+.+..|+- -+ .++..+.
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVNPSNTLILAEAEPPESGKPNQIKFEVIDSIPFASTQVEI 735 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCceEEEeecccccCCCCceEEEEecCccccccccccc
Confidence 57899999999999999999999999999999999999984 11 1111000
Q ss_pred ---------------------------------------------CCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhH
Q 023578 193 ---------------------------------------------RPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDV 227 (280)
Q Consensus 193 ---------------------------------------------~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di 227 (280)
..+.-.|+-...+.+.+.-...-+.|.||+. ||+
T Consensus 736 ~~~~~~~~~~~~~~~~~~~~itG~~l~~l~~~~~~~l~~~~~~~~VfAR~sP~qK~~iV~~lq~~g~~V~m~GDG~-ND~ 814 (1054)
T TIGR01657 736 PYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQKETLVELLQKLDYTVGMCGDGA-NDC 814 (1054)
T ss_pred cCcccccchhhhcccceEEEEEcHHHHHHHHhhHHHHHHHHhcCeEEEecCHHHHHHHHHHHHhCCCeEEEEeCCh-HHH
Confidence 0011123333444444444445689999999 999
Q ss_pred HHHHHcCCcEEEEcCCCCCCccccccCCCCCCEE--EcCHHHHHHHHHh
Q 023578 228 ACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFR--VSSLTEVLSILEA 274 (280)
Q Consensus 228 ~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v--~~~~~dl~~~l~~ 274 (280)
.+.++|.+..++-. + +.. ..+|++ .+++..+...|.+
T Consensus 815 ~ALK~AdVGIam~~-----~--das---~AA~f~l~~~~~~~I~~~I~e 853 (1054)
T TIGR01657 815 GALKQADVGISLSE-----A--EAS---VAAPFTSKLASISCVPNVIRE 853 (1054)
T ss_pred HHHHhcCcceeecc-----c--cce---eecccccCCCcHHHHHHHHHH
Confidence 99999998776632 1 111 256666 4577777777653
No 197
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.27 E-value=0.0009 Score=58.60 Aligned_cols=96 Identities=23% Similarity=0.205 Sum_probs=81.6
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeC--CchHHHHHHHHHcCCcccc--e-eeCCCCCCCCChHHHHHHHHhcCCCCCcEEEE
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITR--NIKEAVDLFHNRFGITFSP--A-LSREFRPYKPDPGPLLHICSTWEVQPNEVMMV 219 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~--~~~~~~~~~l~~~g~~fd~--v-~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~i 219 (280)
.....++.+.+.++|.+|+++|+ -+....+.++...|.++.. + .+++....|.....|..+++.-+++|.+.+++
T Consensus 101 n~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~~~w~H~ 180 (635)
T COG5610 101 NKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENVDPKKWIHC 180 (635)
T ss_pred cccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHHHhhcCCChhheEEe
Confidence 33467899999999999999998 5667788899999988433 3 34677788889999999999999999999999
Q ss_pred cCCchhhHHHHHHcCCcEEEE
Q 023578 220 GDSLKDDVACGKRAGAFTCLL 240 (280)
Q Consensus 220 GDs~~~Di~~a~~~G~~~i~v 240 (280)
||+.-.|..++++.|+.|...
T Consensus 181 GDN~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 181 GDNWVADYLKPKNLGISTLFY 201 (635)
T ss_pred cCchhhhhcCccccchhHHHH
Confidence 999978999999999987653
No 198
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=97.27 E-value=0.0027 Score=53.22 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=56.7
Q ss_pred ccCcCHHHHHHHhhhC----CCeEEEEeCCc----hHHHHHHHHHcCCc--ccceeeCCCCCCCCChHHHHHHHHhcCCC
Q 023578 143 QIMPGTAQLCGFLDSK----KIRRGLITRNI----KEAVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQ 212 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~----g~~i~ivS~~~----~~~~~~~l~~~g~~--fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~ 212 (280)
.+.||+.+.++.|.++ .++.+++||+. +..++.+-+.+|++ -|.++-+.. .|+... . ..
T Consensus 51 ~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqSHs--------P~r~l~-~--~~ 119 (389)
T KOG1618|consen 51 RPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQSHS--------PFRLLV-E--YH 119 (389)
T ss_pred CCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhhcC--------hHHHHh-h--hh
Confidence 5889999999999988 79999999953 23345566777776 232322211 233333 1 23
Q ss_pred CCcEEEEcCCchhhHHHHHHcCCcEEE
Q 023578 213 PNEVMMVGDSLKDDVACGKRAGAFTCL 239 (280)
Q Consensus 213 ~~~~v~iGDs~~~Di~~a~~~G~~~i~ 239 (280)
.++++++|+.. -.+.|+..|+.-|.
T Consensus 120 ~k~vLv~G~~~--vr~vAegyGFk~Vv 144 (389)
T KOG1618|consen 120 YKRVLVVGQGS--VREVAEGYGFKNVV 144 (389)
T ss_pred hceEEEecCCc--HHHHhhccCcccee
Confidence 56799999665 67788889987553
No 199
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=97.25 E-value=0.00086 Score=67.06 Aligned_cols=122 Identities=11% Similarity=0.126 Sum_probs=79.6
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc-cc------------------------------------
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FS------------------------------------ 185 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-fd------------------------------------ 185 (280)
++.||+.+.++.|++.|++++++||.....+..+....|+- -+
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 710 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNNLG 710 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhhhc
Confidence 67899999999999999999999998777777776666653 11
Q ss_pred ------ceeeCCC-----------------------CCCCCChHHHHHHHHhcCCC-CCcEEEEcCCchhhHHHHHHcCC
Q 023578 186 ------PALSREF-----------------------RPYKPDPGPLLHICSTWEVQ-PNEVMMVGDSLKDDVACGKRAGA 235 (280)
Q Consensus 186 ------~v~~~~~-----------------------~~~Kp~~~~~~~~~~~lgi~-~~~~v~iGDs~~~Di~~a~~~G~ 235 (280)
.+++++. ...+-.|.-...+.+.+.-. ..-+.++||+. ||+.|.++|.+
T Consensus 711 ~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~~~~vl~iGDG~-ND~~mlk~AdV 789 (1057)
T TIGR01652 711 DSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGA-NDVSMIQEADV 789 (1057)
T ss_pred cCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcCCCeEEEEeCCC-ccHHHHhhcCe
Confidence 0222210 01111122222222223222 45689999999 99999999988
Q ss_pred cEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHH
Q 023578 236 FTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSIL 272 (280)
Q Consensus 236 ~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l 272 (280)
.. ++.. ..+. .. ...+|+++.++..|..+|
T Consensus 790 GI-gi~g--~eg~-qA---~~aaD~~i~~F~~L~~ll 819 (1057)
T TIGR01652 790 GV-GISG--KEGM-QA---VMASDFAIGQFRFLTKLL 819 (1057)
T ss_pred ee-EecC--hHHH-HH---HHhhhhhhhhHHHHHHHH
Confidence 65 5542 1111 12 237999999999888876
No 200
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.0016 Score=61.32 Aligned_cols=124 Identities=21% Similarity=0.255 Sum_probs=90.6
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc-c-c----ceeeCC-CC----------------CCCCCh
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-F-S----PALSRE-FR----------------PYKPDP 199 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-f-d----~v~~~~-~~----------------~~Kp~~ 199 (280)
+|.|++.+.++.+++.|+++..+|+.+...++.+.++.|+. . + ..+++. .. ...-.|
T Consensus 584 PPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~~P 663 (972)
T KOG0202|consen 584 PPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARAEP 663 (972)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEecCc
Confidence 67899999999999999999999999999999999999986 1 2 123321 10 223345
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEc--CHHHHHHHHHh
Q 023578 200 GPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVS--SLTEVLSILEA 274 (280)
Q Consensus 200 ~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~--~~~dl~~~l~~ 274 (280)
.-..++.+.|.-..+=+.|-||+. ||-.+.+.|.+..++- ..|.+-.++ .+|.|+. +|.-+...+++
T Consensus 664 ~HK~kIVeaLq~~geivAMTGDGV-NDApALK~AdIGIAMG----~~GTdVaKe---AsDMVL~DDnFstIvaAVEE 732 (972)
T KOG0202|consen 664 QHKLKIVEALQSRGEVVAMTGDGV-NDAPALKKADIGIAMG----ISGTDVAKE---ASDMVLADDNFSTIVAAVEE 732 (972)
T ss_pred hhHHHHHHHHHhcCCEEEecCCCc-cchhhhhhcccceeec----CCccHhhHh---hhhcEEecCcHHHHHHHHHH
Confidence 666677777766666788999999 9999999999988773 244443443 6676664 56655555543
No 201
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.09 E-value=0.0019 Score=51.38 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=31.3
Q ss_pred HHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc
Q 023578 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~ 183 (280)
+.+.+.+|++.|++|+.+|+....-+....+.+|+.
T Consensus 28 A~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 28 AAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred cchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 456889999999999999999888888888888876
No 202
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=96.93 E-value=0.0095 Score=50.42 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=60.1
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCch---HHHHHHHHHcCCc--ccceeeCCCCCCCCChHHHHHHHHhcCCCCCc
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIK---EAVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNE 215 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~---~~~~~~l~~~g~~--fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~ 215 (280)
.-.++||+.++|++|+++|++++++||+.. ......++.+|+. .+.++++ .......+++.+.....
T Consensus 16 ~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts--------~~~~~~~l~~~~~~~~~ 87 (279)
T TIGR01452 16 GERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSS--------ALCAARLLRQPPDAPKA 87 (279)
T ss_pred CCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecH--------HHHHHHHHHhhCcCCCE
Confidence 345899999999999999999999999653 3333566778876 3334432 12334455554444567
Q ss_pred EEEEcCCchhhHHHHHHcCCcEE
Q 023578 216 VMMVGDSLKDDVACGKRAGAFTC 238 (280)
Q Consensus 216 ~v~iGDs~~~Di~~a~~~G~~~i 238 (280)
++++|+.. ..+.++..|+..+
T Consensus 88 v~~iG~~~--~~~~l~~~g~~~~ 108 (279)
T TIGR01452 88 VYVIGEEG--LRAELDAAGIRLA 108 (279)
T ss_pred EEEEcCHH--HHHHHHHCCCEEe
Confidence 99999865 4566778888654
No 203
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=96.92 E-value=0.0052 Score=56.52 Aligned_cols=105 Identities=16% Similarity=0.195 Sum_probs=76.6
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCC
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs 222 (280)
.+.|++.+.++.|++.|++++++|+........+.+.+|+. + .-.|+-...+.+++.-....+.++||+
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi~-----~------~~~p~~K~~~v~~l~~~g~~v~~vGDg 415 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGIF-----A------RVTPEEKAALVEALQKKGRVVAMTGDG 415 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCce-----e------ccCHHHHHHHHHHHHHCCCEEEEECCC
Confidence 67899999999999999999999999999999999999861 1 122344444555443334679999999
Q ss_pred chhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcC--HHHHHHHH
Q 023578 223 LKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSS--LTEVLSIL 272 (280)
Q Consensus 223 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~--~~dl~~~l 272 (280)
. ||..+.+.+++..++. . ...+|+++.+ +..+..++
T Consensus 416 ~-nD~~al~~Advgia~~----------a---~~~adivl~~~~l~~i~~~~ 453 (499)
T TIGR01494 416 V-NDAPALKKADVGIAMG----------A---KAAADIVLLDDNLSTIVDAL 453 (499)
T ss_pred h-hhHHHHHhCCCccccc----------h---HHhCCeEEecCCHHHHHHHH
Confidence 9 9999999998764431 1 2357777764 44444444
No 204
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=96.79 E-value=0.0026 Score=53.91 Aligned_cols=98 Identities=21% Similarity=0.121 Sum_probs=69.6
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHc-CCc----ccceee-CCCC-----CCCC----C----------
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRF-GIT----FSPALS-REFR-----PYKP----D---------- 198 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~-g~~----fd~v~~-~~~~-----~~Kp----~---------- 198 (280)
-.|....+++.|+++|.++.++||++..++..-..-+ |-+ ||.|+. .+-. ..+| +
T Consensus 241 r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~wdk 320 (510)
T KOG2470|consen 241 RNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLWDK 320 (510)
T ss_pred ccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhhhh
Confidence 3567888999999999999999999998887554332 333 787654 2100 1111 0
Q ss_pred -----------hHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHH-HcCCcEEEEc
Q 023578 199 -----------PGPLLHICSTWEVQPNEVMMVGDSLKDDVACGK-RAGAFTCLLD 241 (280)
Q Consensus 199 -----------~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~-~~G~~~i~v~ 241 (280)
...+...++--|+...+++++||..-+|+.... +.||+|..+-
T Consensus 321 v~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII 375 (510)
T KOG2470|consen 321 VDKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAII 375 (510)
T ss_pred hhhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccch
Confidence 112345666678888899999999988999888 8999886654
No 205
>PLN03190 aminophospholipid translocase; Provisional
Probab=96.71 E-value=0.0053 Score=61.72 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=39.8
Q ss_pred CcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHH
Q 023578 214 NEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILE 273 (280)
Q Consensus 214 ~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~ 273 (280)
.-++++||+. ||+.|.++|.+.. ++.. .-|.+ . .-.+||.+..|..|..+|-
T Consensus 872 ~vtlaIGDGa-NDv~mIq~AdVGI-GIsG--~EG~q-A---~~aSDfaI~~Fr~L~rLLl 923 (1178)
T PLN03190 872 DMTLAIGDGA-NDVSMIQMADVGV-GISG--QEGRQ-A---VMASDFAMGQFRFLVPLLL 923 (1178)
T ss_pred cEEEEECCCc-chHHHHHhcCeee-eecC--chhHH-H---HHhhccchhhhHHHHHHHH
Confidence 4589999999 9999999998764 6542 22222 2 2389999999999998874
No 206
>PRK10444 UMP phosphatase; Provisional
Probab=96.26 E-value=0.044 Score=45.51 Aligned_cols=99 Identities=17% Similarity=0.104 Sum_probs=61.4
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHH---HHHHHHcCCc--ccceeeCC-C-----CC--CC----CChHHHHHH
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAV---DLFHNRFGIT--FSPALSRE-F-----RP--YK----PDPGPLLHI 205 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~---~~~l~~~g~~--fd~v~~~~-~-----~~--~K----p~~~~~~~~ 205 (280)
.+.||+.++++.|+++|.+++++||+..... ...++.+|++ .+.++++. . .. .+ --...+...
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~~~~~~v~~~g~~~l~~~ 96 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVIGEGALIHE 96 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHhCCCCEEEEEcCHHHHHH
Confidence 6899999999999999999999999776443 3445667876 45566541 0 00 00 111345555
Q ss_pred HHhcCCC----CCcEEEEcCCchhhHHHHH------HcCCcEEEEc
Q 023578 206 CSTWEVQ----PNEVMMVGDSLKDDVACGK------RAGAFTCLLD 241 (280)
Q Consensus 206 ~~~lgi~----~~~~v~iGDs~~~Di~~a~------~~G~~~i~v~ 241 (280)
++..|+. ..+.|++|.....+..... +.|...+..+
T Consensus 97 l~~~g~~~~~~~~~~Vvvg~~~~~~~~~l~~a~~~l~~g~~~i~~n 142 (248)
T PRK10444 97 LYKAGFTITDINPDFVIVGETRSYNWDMMHKAAYFVANGARFIATN 142 (248)
T ss_pred HHHCcCEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEEEEC
Confidence 5665643 3357788876623433322 2377777655
No 207
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.032 Score=41.16 Aligned_cols=105 Identities=17% Similarity=0.202 Sum_probs=63.7
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCC--chHH----HHHHHHHcCCc-cc-ceeeCCCCCCCCChHHHHHHHHhcCC
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRN--IKEA----VDLFHNRFGIT-FS-PALSREFRPYKPDPGPLLHICSTWEV 211 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~--~~~~----~~~~l~~~g~~-fd-~v~~~~~~~~Kp~~~~~~~~~~~lgi 211 (280)
.++.+.|++.++++.|-+. +.++|+|.. .... .+.+.+.+..- .. .++|+.-+.-|-
T Consensus 65 RnL~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgnKnivka-------------- 129 (180)
T COG4502 65 RNLGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGNKNIVKA-------------- 129 (180)
T ss_pred hhcCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecCCCeEEe--------------
Confidence 5677899999999999988 999999975 2222 23333444432 22 245554332221
Q ss_pred CCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHH-HHHhc
Q 023578 212 QPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLS-ILEAN 275 (280)
Q Consensus 212 ~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~-~l~~~ 275 (280)
=++|+|++ .+++..+ |+ -|++.-.++....... .+.++.|+.+ +++.+
T Consensus 130 ----DilIDDnp-~nLE~F~--G~-kIlFdA~HN~nenRF~--------Rv~~W~e~eq~ll~~~ 178 (180)
T COG4502 130 ----DILIDDNP-LNLENFK--GN-KILFDAHHNKNENRFV--------RVRDWYEAEQALLESL 178 (180)
T ss_pred ----eEEecCCc-hhhhhcc--Cc-eEEEecccccCcccee--------eeccHHHHHHHHHHhh
Confidence 26899999 8888765 43 3444433333332333 3789999884 44444
No 208
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=95.97 E-value=0.085 Score=43.40 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=46.8
Q ss_pred CCeEEEEeCCchHHHH---HHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCC
Q 023578 159 KIRRGLITRNIKEAVD---LFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGA 235 (280)
Q Consensus 159 g~~i~ivS~~~~~~~~---~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~ 235 (280)
-+++++||..+...-+ ..++.+|+.+|..+. -.+-+|. .+++.++-. +|++|+. ..++.|. .++
T Consensus 186 piRtalVTAR~apah~RvI~TLr~Wgv~vDEafF---LgG~~K~----~vL~~~~ph----IFFDDQ~-~H~~~a~-~~v 252 (264)
T PF06189_consen 186 PIRTALVTARSAPAHERVIRTLRSWGVRVDEAFF---LGGLPKG----PVLKAFRPH----IFFDDQD-GHLESAS-KVV 252 (264)
T ss_pred ceEEEEEEcCCCchhHHHHHHHHHcCCcHhHHHH---hCCCchh----HHHHhhCCC----EeecCch-hhhhHhh-cCC
Confidence 4789999986554444 455778888665322 1112222 455555533 8999999 9999997 888
Q ss_pred cEEEEc
Q 023578 236 FTCLLD 241 (280)
Q Consensus 236 ~~i~v~ 241 (280)
.++.|.
T Consensus 253 ps~hVP 258 (264)
T PF06189_consen 253 PSGHVP 258 (264)
T ss_pred CEEecc
Confidence 888886
No 209
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=95.82 E-value=0.02 Score=52.56 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=58.8
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCC---chHHHHHHHHHcCCc----ccc--eeeC---------CCCCCCCC---hHHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRN---IKEAVDLFHNRFGIT----FSP--ALSR---------EFRPYKPD---PGPLL 203 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~---~~~~~~~~l~~~g~~----fd~--v~~~---------~~~~~Kp~---~~~~~ 203 (280)
.-|+.++...++++||++..+|.. .....+..|..+.-+ .++ +++- |+-.+||. .+.+.
T Consensus 560 h~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe~FKIAcL~ 639 (738)
T KOG2116|consen 560 HTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDGPVILSPDSLFAALHREVIERKPEVFKIACLT 639 (738)
T ss_pred hhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCchhhhHHHHH
Confidence 468999999999999999999983 334455566554433 232 2221 33355663 23333
Q ss_pred HHHHhcCCCCCc-EEEEcCCchhhHHHHHHcCCcE
Q 023578 204 HICSTWEVQPNE-VMMVGDSLKDDVACGKRAGAFT 237 (280)
Q Consensus 204 ~~~~~lgi~~~~-~v~iGDs~~~Di~~a~~~G~~~ 237 (280)
.+.+-+.-+.+- ...||+.. +|+-.=+++|+.-
T Consensus 640 DIk~LF~p~~nPFYAgFGNR~-TDviSY~~VgVP~ 673 (738)
T KOG2116|consen 640 DIKNLFPPSGNPFYAGFGNRI-TDVISYRQVGVPL 673 (738)
T ss_pred HHHHhcCCCCCceeeecCCCc-ccceeeeeecCCc
Confidence 444445422222 45799999 9999999999853
No 210
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=95.68 E-value=0.033 Score=50.04 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=71.0
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCC
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs 222 (280)
...||+.|-+.+||+.|++.+-+|+.+.-....+.+..|++ .++. .-+|+-...+.++.+-...=+.|.||+
T Consensus 447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVD--dfiA------eatPEdK~~~I~~eQ~~grlVAMtGDG 518 (681)
T COG2216 447 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVD--DFIA------EATPEDKLALIRQEQAEGRLVAMTGDG 518 (681)
T ss_pred hcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCch--hhhh------cCChHHHHHHHHHHHhcCcEEEEcCCC
Confidence 34799999999999999999999999988888888999986 2211 223455566667666666678899999
Q ss_pred chhhHHHHHHcCCcEEEE
Q 023578 223 LKDDVACGKRAGAFTCLL 240 (280)
Q Consensus 223 ~~~Di~~a~~~G~~~i~v 240 (280)
- ||..+..++....++-
T Consensus 519 T-NDAPALAqAdVg~AMN 535 (681)
T COG2216 519 T-NDAPALAQADVGVAMN 535 (681)
T ss_pred C-Ccchhhhhcchhhhhc
Confidence 9 9999999998877763
No 211
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=95.40 E-value=0.057 Score=42.42 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=30.0
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc----ccceee
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT----FSPALS 189 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~----fd~v~~ 189 (280)
...|.+.+.|+.||.. ..+++|-++.- ....+.+|-. ||.+++
T Consensus 28 ~~~~e~~~~l~~lr~~-v~ig~VggsDl---~k~~eqlG~~Vl~~fDY~F~ 74 (252)
T KOG3189|consen 28 KVTPEMLEFLQKLRKK-VTIGFVGGSDL---SKQQEQLGDNVLEEFDYVFS 74 (252)
T ss_pred cCCHHHHHHHHHHhhh-eEEEEeecHHH---HHHHHHhchhHHhhhccccc
Confidence 4678888999999887 78888877543 3344555644 676665
No 212
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=95.33 E-value=0.038 Score=46.09 Aligned_cols=42 Identities=14% Similarity=0.003 Sum_probs=33.0
Q ss_pred CcccCcCHHHHHHHhhhC-CCeEEEEeCCchHHHHHHHHHcCC
Q 023578 141 RLQIMPGTAQLCGFLDSK-KIRRGLITRNIKEAVDLFHNRFGI 182 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~-g~~i~ivS~~~~~~~~~~l~~~g~ 182 (280)
...+.+++.++|+.|..+ ...++|+|+......+.++.-.|+
T Consensus 38 ~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i 80 (266)
T COG1877 38 AAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPGI 80 (266)
T ss_pred ccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCc
Confidence 456888999999999988 345999999988888777764444
No 213
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.37 Score=40.92 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=53.9
Q ss_pred CcccCcCHHHHHHHhhhCC-CeEEEEeCCchHHHHHHHHHc---CCc------------ccceeeCCCCCCCCChHHHHH
Q 023578 141 RLQIMPGTAQLCGFLDSKK-IRRGLITRNIKEAVDLFHNRF---GIT------------FSPALSREFRPYKPDPGPLLH 204 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g-~~i~ivS~~~~~~~~~~l~~~---g~~------------fd~v~~~~~~~~Kp~~~~~~~ 204 (280)
...++||+-.+.+.|.+.| .++..+||+.-.....+.+-+ ++. ++.++.+ ....| ...+..
T Consensus 194 tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~s-ga~rK--~~~l~n 270 (373)
T COG4850 194 TRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIES-GAARK--GQSLRN 270 (373)
T ss_pred ccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccccc-hhhhc--ccHHHH
Confidence 4578999999999998887 899999997655433332222 222 2222211 11122 245555
Q ss_pred HHHhcCCCCCcEEEEcCCchhhHHH
Q 023578 205 ICSTWEVQPNEVMMVGDSLKDDVAC 229 (280)
Q Consensus 205 ~~~~lgi~~~~~v~iGDs~~~Di~~ 229 (280)
++.+++ ....+.|||+-+.|.+.
T Consensus 271 il~~~p--~~kfvLVGDsGE~DpeI 293 (373)
T COG4850 271 ILRRYP--DRKFVLVGDSGEHDPEI 293 (373)
T ss_pred HHHhCC--CceEEEecCCCCcCHHH
Confidence 677663 45789999999889865
No 214
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.20 E-value=0.027 Score=47.05 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=38.0
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCchH---HHHHHHHHcCCc--ccceeeC
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIKE---AVDLFHNRFGIT--FSPALSR 190 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~~---~~~~~l~~~g~~--fd~v~~~ 190 (280)
+.|++.+++++|+++|++++++||++.. .+...++.+|++ .+.++++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts 73 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTP 73 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcH
Confidence 8899999999999999999999996555 356667888887 4556653
No 215
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=95.02 E-value=0.034 Score=45.65 Aligned_cols=91 Identities=15% Similarity=0.252 Sum_probs=54.9
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccc--eeeC-----CCC------------CCCCChH
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSP--ALSR-----EFR------------PYKPDPG 200 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~--v~~~-----~~~------------~~Kp~~~ 200 (280)
....+.+|+.++++.|.++++++.|.|.|-.+.++.+++..|..++- |++. +.+ ..|.. .
T Consensus 87 s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~-~ 165 (246)
T PF05822_consen 87 SDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNE-S 165 (246)
T ss_dssp S---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHH-H
T ss_pred cchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCc-c
Confidence 45678999999999999999999999999999999999888765221 2221 111 11111 1
Q ss_pred HHH--HHHHhcCCCCCcEEEEcCCchhhHHHHHHc
Q 023578 201 PLL--HICSTWEVQPNEVMMVGDSLKDDVACGKRA 233 (280)
Q Consensus 201 ~~~--~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~ 233 (280)
.+. ...+++. ...+++..||+. .|+.|+..+
T Consensus 166 ~l~~~~~~~~~~-~R~NvlLlGDsl-gD~~Ma~G~ 198 (246)
T PF05822_consen 166 ALEDSPYFKQLK-KRTNVLLLGDSL-GDLHMADGV 198 (246)
T ss_dssp HHTTHHHHHCTT-T--EEEEEESSS-GGGGTTTT-
T ss_pred cccCchHHHHhc-cCCcEEEecCcc-CChHhhcCC
Confidence 110 1112221 356799999999 999998766
No 216
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=94.56 E-value=0.18 Score=41.05 Aligned_cols=79 Identities=10% Similarity=0.045 Sum_probs=54.4
Q ss_pred CeEEEEeCCchHHH-HHHHHHcCCc--ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCc
Q 023578 160 IRRGLITRNIKEAV-DLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAF 236 (280)
Q Consensus 160 ~~i~ivS~~~~~~~-~~~l~~~g~~--fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~ 236 (280)
+.+.|.|+.-.+.. +.++-.+|-- ++-|+++. +.+| ...|+.+.+++|-+...-++|||+. ..-.+|+..+|+
T Consensus 177 vNvLVTs~qLVPaLaKcLLy~L~~~f~ieNIYSa~-kvGK--~~cFe~I~~Rfg~p~~~f~~IGDG~-eEe~aAk~l~wP 252 (274)
T TIGR01658 177 INVLVTSGQLIPSLAKCLLFRLDTIFRIENVYSSI-KVGK--LQCFKWIKERFGHPKVRFCAIGDGW-EECTAAQAMNWP 252 (274)
T ss_pred eEEEEEcCccHHHHHHHHHhccCCccccccccchh-hcch--HHHHHHHHHHhCCCCceEEEeCCCh-hHHHHHHhcCCC
Confidence 34444444443333 3333444332 44566542 2334 5899999999998788999999999 999999999999
Q ss_pred EEEEcC
Q 023578 237 TCLLDE 242 (280)
Q Consensus 237 ~i~v~~ 242 (280)
++-++.
T Consensus 253 Fw~I~~ 258 (274)
T TIGR01658 253 FVKIDL 258 (274)
T ss_pred eEEeec
Confidence 999874
No 217
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=94.25 E-value=0.3 Score=35.45 Aligned_cols=86 Identities=8% Similarity=-0.005 Sum_probs=59.8
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCch-HHHHHHHHHcCCcccceee-------CCCCCCCCChHHHHHHHHhcCCC
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIK-EAVDLFHNRFGITFSPALS-------REFRPYKPDPGPLLHICSTWEVQ 212 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~-~~~~~~l~~~g~~fd~v~~-------~~~~~~Kp~~~~~~~~~~~lgi~ 212 (280)
....++++...|..|+++|+.++++|++.. +.+.+.|+.+.+..++++. ......-.+...|..+-+..|+.
T Consensus 42 e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~Gvlkps~e~ft~~~~g~gsklghfke~~n~s~~~ 121 (144)
T KOG4549|consen 42 EMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQTGVLKPSLEEFTFEAVGDGSKLGHFKEFTNNSNSI 121 (144)
T ss_pred eeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcccccchhhhcCceeeecCcccchhHHHHhhccCcc
Confidence 456789999999999999999999998654 4567788888776333321 11111122345566777777887
Q ss_pred CCcEEEEcCCchhhH
Q 023578 213 PNEVMMVGDSLKDDV 227 (280)
Q Consensus 213 ~~~~v~iGDs~~~Di 227 (280)
..+..+++|.. .+-
T Consensus 122 ~k~~~~fdDes-rnk 135 (144)
T KOG4549|consen 122 EKNKQVFDDES-RNK 135 (144)
T ss_pred hhceeeecccc-cCC
Confidence 88888888877 543
No 218
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=94.11 E-value=0.14 Score=45.01 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=50.2
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchH---HHHH---HHHHcCCc-cc--------ceeeC---CCCCCCCChHHHHHH-
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKE---AVDL---FHNRFGIT-FS--------PALSR---EFRPYKPDPGPLLHI- 205 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~---~~~~---~l~~~g~~-fd--------~v~~~---~~~~~Kp~~~~~~~~- 205 (280)
..|+..+...+.++||+|.-+|+...- ..+. ..+.-|.. .+ ..+++ +.-..|| +.|+.+
T Consensus 405 h~gVAkLYtdI~rNGYkI~YltsR~~Gqa~sTrsylrnieQngykLpdgpviLspd~t~aal~relIlrkp--E~FKiay 482 (580)
T COG5083 405 HNGVAKLYTDIDRNGYKIKYLTSRSYGQADSTRSYLRNIEQNGYKLPDGPVILSPDRTMAALYRELILRKP--EVFKIAY 482 (580)
T ss_pred hcchhhhhhhhccCceEEEEEecccccchhhhhhHHHhhhhcCccCCCCCEeeccchhhhhhhhhhhhcCh--HHHHHHH
Confidence 356677777788899999999973221 1122 22333433 22 22221 2223455 443322
Q ss_pred ---HHhcCCCCCcE-EEEcCCchhhHHHHHHcCCc
Q 023578 206 ---CSTWEVQPNEV-MMVGDSLKDDVACGKRAGAF 236 (280)
Q Consensus 206 ---~~~lgi~~~~~-v~iGDs~~~Di~~a~~~G~~ 236 (280)
++.+++.++-. .-+|+.. .|+.+=+++|+.
T Consensus 483 Lndl~slf~e~~PFyAGFGNri-TDvisY~~vgIp 516 (580)
T COG5083 483 LNDLKSLFIEFDPFYAGFGNRI-TDVISYSNVGIP 516 (580)
T ss_pred HHHHHHhhCcCChhhccccccc-hhheeeccccCC
Confidence 23334443333 3689999 999999999985
No 219
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=94.01 E-value=0.67 Score=38.12 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=36.4
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCc---hHHHHHHHHH-cCCc--ccceeeC
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNI---KEAVDLFHNR-FGIT--FSPALSR 190 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~---~~~~~~~l~~-~g~~--fd~v~~~ 190 (280)
...++|++.+.++.++++|+++.++||+. .......+.. +|++ .+.++++
T Consensus 12 ~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits 67 (236)
T TIGR01460 12 GHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITS 67 (236)
T ss_pred CCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeH
Confidence 44678999999999999999999999755 2233334444 7776 5666653
No 220
>PTZ00174 phosphomannomutase; Provisional
Probab=93.90 E-value=0.07 Score=44.28 Aligned_cols=43 Identities=14% Similarity=0.037 Sum_probs=36.6
Q ss_pred CCCCChHHHHHHHHhcCCCCCcEEEEcC----CchhhHHHHHHcCCcEEEEc
Q 023578 194 PYKPDPGPLLHICSTWEVQPNEVMMVGD----SLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~~lgi~~~~~v~iGD----s~~~Di~~a~~~G~~~i~v~ 241 (280)
.+-.|..+++.++++ ++++++||| +. ||++|.+.+|...+.|.
T Consensus 185 ~gvsKg~al~~L~~~----~~eviafGD~~~~~~-NDieMl~~~~~~g~~v~ 231 (247)
T PTZ00174 185 KGWDKTYCLRHLEND----FKEIHFFGDKTFEGG-NDYEIYNDPRTIGHSVK 231 (247)
T ss_pred CCCcHHHHHHHHHhh----hhhEEEEcccCCCCC-CcHhhhhcCCCceEEeC
Confidence 456677899999998 589999999 88 99999998888777765
No 221
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=93.67 E-value=0.13 Score=49.96 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=33.3
Q ss_pred cccCcCHHHHHHHhhhC-CCeEEEEeCCchHHHHHHHHHcCC
Q 023578 142 LQIMPGTAQLCGFLDSK-KIRRGLITRNIKEAVDLFHNRFGI 182 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~-g~~i~ivS~~~~~~~~~~l~~~g~ 182 (280)
..+.|++.++|+.|.+. +..++|+|+.....++.++...++
T Consensus 531 a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~l 572 (797)
T PLN03063 531 LGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYNI 572 (797)
T ss_pred CCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCCC
Confidence 45778899999999875 678999999999988888865443
No 222
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=93.18 E-value=0.14 Score=50.32 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=33.5
Q ss_pred cccCcCHHHHHHHhhhC-CCeEEEEeCCchHHHHHHHHHcCC
Q 023578 142 LQIMPGTAQLCGFLDSK-KIRRGLITRNIKEAVDLFHNRFGI 182 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~-g~~i~ivS~~~~~~~~~~l~~~g~ 182 (280)
..+.|++.++|+.|.+. +..|+|+|+.....++.++...++
T Consensus 621 a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~L 662 (934)
T PLN03064 621 LRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFDM 662 (934)
T ss_pred cCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCCCc
Confidence 35778899999999875 678999999999988888866544
No 223
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=92.92 E-value=0.55 Score=45.05 Aligned_cols=121 Identities=16% Similarity=0.171 Sum_probs=76.6
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc-ccc-eee--C-CCC----------------CCCCChHH
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FSP-ALS--R-EFR----------------PYKPDPGP 201 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-fd~-v~~--~-~~~----------------~~Kp~~~~ 201 (280)
+..||+.+.++.++..|+.+--+|+.+...++.+...-|+- -+. ..+ + +.. -+...|.-
T Consensus 647 PvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP~D 726 (1034)
T KOG0204|consen 647 PVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSPND 726 (1034)
T ss_pred CCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCCch
Confidence 45799999999999999999999999999999999888876 211 111 1 111 01112222
Q ss_pred HHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEc--CHHHHHHH
Q 023578 202 LLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVS--SLTEVLSI 271 (280)
Q Consensus 202 ~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~--~~~dl~~~ 271 (280)
-..+.+-+.-..+-+.+-||+- ||-.+.++|.+..++- ..|.+-.+ ...|+++- +|..+...
T Consensus 727 K~lLVk~L~~~g~VVAVTGDGT-NDaPALkeADVGlAMG----IaGTeVAK---EaSDIIi~DDNFssIVk~ 790 (1034)
T KOG0204|consen 727 KHLLVKGLIKQGEVVAVTGDGT-NDAPALKEADVGLAMG----IAGTEVAK---EASDIIILDDNFSSIVKA 790 (1034)
T ss_pred HHHHHHHHHhcCcEEEEecCCC-CCchhhhhcccchhcc----ccchhhhh---hhCCeEEEcCchHHHHHH
Confidence 2222222221223355679999 9999999999887762 23333333 37777764 45554444
No 224
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=92.56 E-value=0.62 Score=40.30 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=60.5
Q ss_pred CCcccCcCHHHHHHHhhhC----CCeEEEEeCCc---hH-HHHHHHHHcCCc--ccceeeCCCCCCCCChHHHHHHHHhc
Q 023578 140 DRLQIMPGTAQLCGFLDSK----KIRRGLITRNI---KE-AVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTW 209 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~----g~~i~ivS~~~---~~-~~~~~l~~~g~~--fd~v~~~~~~~~Kp~~~~~~~~~~~l 209 (280)
....+.|++.++++.|+.+ |+++.++||+. .. ..+.+.+++|++ .+.++++. ......++++
T Consensus 13 ~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~--------~~~~~ll~~~ 84 (321)
T TIGR01456 13 RGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH--------SPYKSLVNKY 84 (321)
T ss_pred CCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh--------HHHHHHHHHc
Confidence 3446799999999999998 99999999975 33 344455888987 34454432 1334445555
Q ss_pred CCCCCcEEEEcCCchhhHHHHHHcCCcEEE
Q 023578 210 EVQPNEVMMVGDSLKDDVACGKRAGAFTCL 239 (280)
Q Consensus 210 gi~~~~~v~iGDs~~~Di~~a~~~G~~~i~ 239 (280)
+ ..++++|.+. -.+.++.+|+..+.
T Consensus 85 ~---~~v~viG~~~--~~~~l~~~G~~~vv 109 (321)
T TIGR01456 85 E---KRILAVGTGS--VRGVAEGYGFQNVV 109 (321)
T ss_pred C---CceEEEeChH--HHHHHHHcCCcccc
Confidence 3 2688999765 47778899987653
No 225
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=92.18 E-value=0.17 Score=41.62 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=25.3
Q ss_pred ChHHHHHHHHhcCCC---CCcEEEEcCCchhhHHHHHHcCCc
Q 023578 198 DPGPLLHICSTWEVQ---PNEVMMVGDSLKDDVACGKRAGAF 236 (280)
Q Consensus 198 ~~~~~~~~~~~lgi~---~~~~v~iGDs~~~Di~~a~~~G~~ 236 (280)
|....+.++++++.. +.-++|+||+. +|-.+.+.+.-.
T Consensus 166 KG~av~~ll~~~~~~~~~~~~~l~~GDD~-tDE~~f~~~~~~ 206 (235)
T PF02358_consen 166 KGSAVRRLLEELPFAGPKPDFVLYIGDDR-TDEDAFRALREL 206 (235)
T ss_dssp HHHHHHHHHTTS---------EEEEESSH-HHHHHHHTTTTS
T ss_pred hHHHHHHHHHhcCccccccceeEEecCCC-CCHHHHHHHHhc
Confidence 344667777777765 67899999999 999999887553
No 226
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=92.16 E-value=1.3 Score=37.61 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=35.8
Q ss_pred CCCChHHHHHHHHhcCCC--CCcEEEEcCCchhhHHHHHHcCCcEEE
Q 023578 195 YKPDPGPLLHICSTWEVQ--PNEVMMVGDSLKDDVACGKRAGAFTCL 239 (280)
Q Consensus 195 ~Kp~~~~~~~~~~~lgi~--~~~~v~iGDs~~~Di~~a~~~G~~~i~ 239 (280)
..+|....+.+.+.++-. +-.++.+|||+ ||+.|.+.+...++.
T Consensus 206 ~~dKg~A~~~L~~~y~~~~~~~~tiaLGDsp-ND~~mLe~~D~~vvi 251 (302)
T PRK12702 206 SLPGEQAVQLLLDCYQRHLGPIKALGIGCSP-PDLAFLRWSEQKVVL 251 (302)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEEecCCh-hhHHHHHhCCeeEEe
Confidence 456778888888877643 45899999999 999999999987665
No 227
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=92.13 E-value=1.3 Score=37.31 Aligned_cols=92 Identities=13% Similarity=0.065 Sum_probs=58.7
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHH---HHcCCc-c--cceeeCCCCCCCCChHHHHHHHHhcCCCC
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFH---NRFGIT-F--SPALSREFRPYKPDPGPLLHICSTWEVQP 213 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l---~~~g~~-f--d~v~~~~~~~~Kp~~~~~~~~~~~lgi~~ 213 (280)
..-.+.||+.+.++.|+..|-++.++||++...-+... +++|+. + +.+++ |.-.. -..+++..-..
T Consensus 35 ~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~s-------sa~~~-a~ylk~~~~~~ 106 (306)
T KOG2882|consen 35 LGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIFS-------SAYAI-ADYLKKRKPFG 106 (306)
T ss_pred ecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCcccccC-------hHHHH-HHHHHHhCcCC
Confidence 35578999999999999999999999997766555444 456654 2 22322 21122 22333333345
Q ss_pred CcEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 214 NEVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 214 ~~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
+.+.++|-.. =-+..+++|+......
T Consensus 107 k~Vyvig~~g--i~~eL~~aG~~~~g~~ 132 (306)
T KOG2882|consen 107 KKVYVIGEEG--IREELDEAGFEYFGGG 132 (306)
T ss_pred CeEEEecchh--hhHHHHHcCceeecCC
Confidence 6777777665 3456778887666544
No 228
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=91.60 E-value=2.3 Score=42.84 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=25.5
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCc
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNI 169 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~ 169 (280)
+-++.+|+.|.++.|++.|+|++++|+--
T Consensus 649 EDkLQdgVPetI~~L~~AGIKIWVLTGDK 677 (1151)
T KOG0206|consen 649 EDKLQDGVPETIAKLAQAGIKIWVLTGDK 677 (1151)
T ss_pred echhccCchHHHHHHHHcCCEEEEEcCcH
Confidence 34678999999999999999999999843
No 229
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=90.78 E-value=0.025 Score=46.88 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=62.4
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEE
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMM 218 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~ 218 (280)
+.-.|++.++|....+. +.+++.|++...+...++..+.-. +...+-.+....++ ..|-+-+..+|-+..+++.
T Consensus 130 V~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~RlyR~~C~~~~--g~yvKdls~~~~dL~~viI 206 (262)
T KOG1605|consen 130 VRKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLLDILDPDRKIISHRLYRDSCTLKD--GNYVKDLSVLGRDLSKVII 206 (262)
T ss_pred EEcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHHHHccCCCCeeeeeecccceEeEC--CcEEEEcceeccCcccEEE
Confidence 45689999999999988 899999999999999999888752 22222111110000 0111122556778889999
Q ss_pred EcCCchhhHHHHHHcCCcE
Q 023578 219 VGDSLKDDVACGKRAGAFT 237 (280)
Q Consensus 219 iGDs~~~Di~~a~~~G~~~ 237 (280)
|+|++ .-..+=-.-|+..
T Consensus 207 iDNsP-~sy~~~p~NgIpI 224 (262)
T KOG1605|consen 207 VDNSP-QSYRLQPENGIPI 224 (262)
T ss_pred EcCCh-HHhccCccCCCcc
Confidence 99999 7777666667654
No 230
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=90.68 E-value=0.97 Score=42.53 Aligned_cols=116 Identities=15% Similarity=0.082 Sum_probs=69.4
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc----ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEc
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT----FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~----fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iG 220 (280)
..++..-|..||.++...-++++.+-.+.-...+.--++ ...++++.+.. .-|+.+.+.+.++-| ..+.+||
T Consensus 713 r~dah~eL~~lR~k~~~aLvi~G~Sl~~cl~yye~Ef~el~~~~~aVv~CRctP-tQKA~v~~llq~~t~---krvc~IG 788 (1051)
T KOG0210|consen 713 RGDAHNELNNLRRKTDCALVIDGESLEFCLKYYEDEFIELVCELPAVVCCRCTP-TQKAQVVRLLQKKTG---KRVCAIG 788 (1051)
T ss_pred chHHHHHHHHhhcCCCcEEEEcCchHHHHHHHHHHHHHHHHHhcCcEEEEecCh-hHHHHHHHHHHHhhC---ceEEEEc
Confidence 467788889999887666666664433322222211111 34556554321 223455555555555 5788999
Q ss_pred CCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHH
Q 023578 221 DSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSIL 272 (280)
Q Consensus 221 Ds~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l 272 (280)
|+. ||+.|..+|... |++.. ..|.+. .-.||+-+.-|..+..+|
T Consensus 789 DGG-NDVsMIq~A~~G-iGI~g--kEGkQA----SLAADfSItqF~Hv~rLL 832 (1051)
T KOG0210|consen 789 DGG-NDVSMIQAADVG-IGIVG--KEGKQA----SLAADFSITQFSHVSRLL 832 (1051)
T ss_pred CCC-ccchheeecccc-eeeec--cccccc----chhccccHHHHHHHHHHh
Confidence 999 999998887653 44431 233322 237888888777776665
No 231
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=90.61 E-value=0.47 Score=39.95 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=36.8
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~ 183 (280)
...++..++|+.|+++|++++++||.....+...++.+|+.
T Consensus 21 ~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 21 YSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 35577889999999999999999999999999999999975
No 232
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=90.14 E-value=0.56 Score=37.99 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=34.8
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~ 183 (280)
.+...++|+.|+++|++++++||+....++..++.+++.
T Consensus 18 ~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 18 WQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred cHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 334789999999999999999999999999999999864
No 233
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=89.78 E-value=0.9 Score=37.78 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=35.0
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~ 183 (280)
.+...++++.|+++|++++++|++....+...++.+|+.
T Consensus 18 ~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 18 WGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred chHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 345789999999999999999999999999999999974
No 234
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=89.69 E-value=0.62 Score=37.88 Aligned_cols=41 Identities=12% Similarity=-0.021 Sum_probs=36.6
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~ 183 (280)
.+.|...+.|++|+++|++++++|+++...+....+.+++.
T Consensus 20 ~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 20 RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 35678889999999999999999999999888888888875
No 235
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=88.88 E-value=0.82 Score=38.21 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=36.7
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~ 183 (280)
.+.|...+.|++++++|++++++|++....+...++.+++.
T Consensus 20 ~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 20 TILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALD 60 (272)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 46677889999999999999999999999888899999875
No 236
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=88.44 E-value=1.1 Score=37.70 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=35.6
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~ 183 (280)
..+...+.|++|+++|++++++|++....+...++.+|++
T Consensus 25 i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 25 DWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 4466788999999999999999999999999999999874
No 237
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.37 E-value=1.1 Score=36.91 Aligned_cols=92 Identities=14% Similarity=0.200 Sum_probs=60.4
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHc-CCc-ccceeeC-----CCC----CCCC-------ChHHH
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRF-GIT-FSPALSR-----EFR----PYKP-------DPGPL 202 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~-g~~-fd~v~~~-----~~~----~~Kp-------~~~~~ 202 (280)
...+.+|..++...|+.+++++.|.|.+.-..++.+++.. +.. +..++|. +.+ ..+| ....+
T Consensus 136 ~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~ 215 (298)
T KOG3128|consen 136 NIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVL 215 (298)
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCccHHhhhhhhhhcccchhhhhhHHHHHHHccchHHH
Confidence 4467789999999999999999999999999888877543 332 2222220 111 1111 11223
Q ss_pred HHHHHhcC--CCCCcEEEEcCCchhhHHHHHHc
Q 023578 203 LHICSTWE--VQPNEVMMVGDSLKDDVACGKRA 233 (280)
Q Consensus 203 ~~~~~~lg--i~~~~~v~iGDs~~~Di~~a~~~ 233 (280)
+...+.+. -....+++.||+. .|+.||..+
T Consensus 216 ~~~s~yf~~~~~~~nVillGdsi-gdl~ma~gv 247 (298)
T KOG3128|consen 216 QNESEYFHQLAGRVNVILLGDSI-GDLHMADGV 247 (298)
T ss_pred HhhhHHHhhccCCceEEEecccc-ccchhhcCC
Confidence 33344443 2466899999999 999998754
No 238
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=87.89 E-value=1 Score=36.47 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=36.0
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~ 183 (280)
.+.+...+.|++++++|++++++|++....+..+++.+|..
T Consensus 15 ~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~ 55 (225)
T TIGR01482 15 AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTP 55 (225)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 35677788999999999999999999999888888999864
No 239
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=86.89 E-value=2.5 Score=36.79 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=51.4
Q ss_pred eEEEEeCCchHHH-HHHHHHcCCc--ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcE
Q 023578 161 RRGLITRNIKEAV-DLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFT 237 (280)
Q Consensus 161 ~i~ivS~~~~~~~-~~~l~~~g~~--fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~ 237 (280)
.|.|-|....... +.++-.+|-. ++-|++.. +.+ |...|+++.+++|- ...-++|||+. ..-.+|++..|.+
T Consensus 373 nVlvTttqLipalaKvLL~gLg~~fpiENIYSa~-kiG--KescFerI~~RFg~-K~~yvvIgdG~-eee~aAK~ln~Pf 447 (468)
T KOG3107|consen 373 NVLVTTTQLIPALAKVLLYGLGSSFPIENIYSAT-KIG--KESCFERIQSRFGR-KVVYVVIGDGV-EEEQAAKALNMPF 447 (468)
T ss_pred EEEEeccchhHHHHHHHHHhcCCcccchhhhhhh-hcc--HHHHHHHHHHHhCC-ceEEEEecCcH-HHHHHHHhhCCce
Confidence 3444444433333 3333444433 45566542 222 34799999999997 56778999999 8999999999999
Q ss_pred EEEcC
Q 023578 238 CLLDE 242 (280)
Q Consensus 238 i~v~~ 242 (280)
+-++.
T Consensus 448 wrI~~ 452 (468)
T KOG3107|consen 448 WRISS 452 (468)
T ss_pred Eeecc
Confidence 98873
No 240
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=84.13 E-value=1 Score=43.23 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=59.5
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc------cc-----------ceeeCC------CCCCCC--
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT------FS-----------PALSRE------FRPYKP-- 197 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~------fd-----------~v~~~~------~~~~Kp-- 197 (280)
+|...+.+.+..+|..|++++.+|+......+.+.+..|+- ++ .+.+.+ .+..+|
T Consensus 590 PPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~~~ 669 (1019)
T KOG0203|consen 590 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELPDM 669 (1019)
T ss_pred CCcccCchhhhhhhhhCceEEEEecCccchhhhhhhheeeecCCchhhhhhHHhcCCcccccCccccceEEEeccccccc
Confidence 45678889999999999999999997666666666655532 11 111110 001111
Q ss_pred ChHHHHHHHHhcC------CCCC--------------cEEEEcCCchhhHHHHHHcCCcEEE
Q 023578 198 DPGPLLHICSTWE------VQPN--------------EVMMVGDSLKDDVACGKRAGAFTCL 239 (280)
Q Consensus 198 ~~~~~~~~~~~lg------i~~~--------------~~v~iGDs~~~Di~~a~~~G~~~i~ 239 (280)
.++-+++++.... -+|+ =+.+.||+. ||-.+.+++.+.+++
T Consensus 670 ~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGV-NDsPALKKADIGVAM 730 (1019)
T KOG0203|consen 670 SSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGV-NDSPALKKADIGVAM 730 (1019)
T ss_pred CHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCc-CCChhhcccccceee
Confidence 1233334433322 0111 245789999 999999999998888
No 241
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=83.86 E-value=2.9 Score=36.60 Aligned_cols=16 Identities=44% Similarity=0.341 Sum_probs=14.2
Q ss_pred CccEEEEeCCCcccCC
Q 023578 67 RLRGVVFDMDGTLTVP 82 (280)
Q Consensus 67 ~~k~iiFD~DGTL~d~ 82 (280)
..|.|.||=|+||++-
T Consensus 146 ~L~LvTFDgDvTLY~D 161 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYED 161 (408)
T ss_pred CceEEEEcCCcccccC
Confidence 6899999999999953
No 242
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=83.79 E-value=3.8 Score=39.58 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=34.9
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~ 183 (280)
..++.|+..+.++.|.+.+++++.+|+.+.-.+-.+.+.+|+-
T Consensus 673 ~CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~iv 715 (1160)
T KOG0209|consen 673 SCPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGIV 715 (1160)
T ss_pred eCCCCccHHHHHHHHhccCceEEEEeCCCccchheehheeeee
Confidence 3467899999999999999999999997776666666666654
No 243
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=82.55 E-value=2.3 Score=35.17 Aligned_cols=46 Identities=4% Similarity=-0.170 Sum_probs=38.3
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc-ccceee
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FSPALS 189 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-fd~v~~ 189 (280)
..|.+.+++++++++|+.++++|+.....++.+.+.+++. .+.+++
T Consensus 22 ~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~ 68 (249)
T TIGR01485 22 ALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVT 68 (249)
T ss_pred HHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 4477888999999999999999999999999998888876 444554
No 244
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=82.31 E-value=27 Score=28.98 Aligned_cols=120 Identities=15% Similarity=0.143 Sum_probs=70.9
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHH--HcCCc-ccceee-CC--CC---------CCCCChHHHHHH
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHN--RFGIT-FSPALS-RE--FR---------PYKPDPGPLLHI 205 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~--~~g~~-fd~v~~-~~--~~---------~~Kp~~~~~~~~ 205 (280)
.+....+..++.+.+.+.+.+-+++|-|.+.. ..+.+ ..+.. |-.+.- .+ .+ .+-=..+.=..+
T Consensus 111 ~~~~v~~~~eA~~~l~~~~~~~iflttGsk~L-~~f~~~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPfs~e~n~al 189 (249)
T PF02571_consen 111 NWHYVDSYEEAAELLKELGGGRIFLTTGSKNL-PPFVPAPLPGERLFARVLPTPESALGFPPKNIIAMQGPFSKELNRAL 189 (249)
T ss_pred eEEEeCCHHHHHHHHhhcCCCCEEEeCchhhH-HHHhhcccCCCEEEEEECCCccccCCCChhhEEEEeCCCCHHHHHHH
Confidence 35667889999999988875555666555443 33322 22211 111211 11 11 011122345677
Q ss_pred HHhcCCCCCcEEEEcCCc----hhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHh
Q 023578 206 CSTWEVQPNEVMMVGDSL----KDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEA 274 (280)
Q Consensus 206 ~~~lgi~~~~~v~iGDs~----~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~ 274 (280)
+++++++ +++-=||- ..=+++|+++|+.++++.++.. ..+..++.+++|+.++|++
T Consensus 190 ~~~~~i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~----------~~~~~~~~~~~e~l~~l~~ 249 (249)
T PF02571_consen 190 FRQYGID---VLVTKESGGSGFDEKIEAARELGIPVIVIKRPPE----------PYGDPVVETIEELLDWLEQ 249 (249)
T ss_pred HHHcCCC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCC----------CCCCcccCCHHHHHHHHhC
Confidence 8888875 55554442 1458899999999999986422 1334447899999998864
No 245
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=80.68 E-value=31 Score=28.60 Aligned_cols=95 Identities=8% Similarity=0.011 Sum_probs=57.0
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCC----------------------cccceeeCCCCCCCC
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI----------------------TFSPALSREFRPYKP 197 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~----------------------~fd~v~~~~~~~~Kp 197 (280)
+.+.-.+.+.++.+.+++.|-++.+.++... +..+...... .-+.+++..-...
T Consensus 109 d~~~~V~d~~ea~~~~~~~~~rVflt~G~~~--l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs-- 184 (257)
T COG2099 109 DNWIEVADIEEAAEAAKQLGRRVFLTTGRQN--LAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFS-- 184 (257)
T ss_pred CceEEecCHHHHHHHHhccCCcEEEecCccc--hHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcC--
Confidence 3445567889999999988766666665432 2323322222 1111222111111
Q ss_pred ChHHHHHHHHhcCCCCCcEEEEcCCchh------hHHHHHHcCCcEEEEcCC
Q 023578 198 DPGPLLHICSTWEVQPNEVMMVGDSLKD------DVACGKRAGAFTCLLDET 243 (280)
Q Consensus 198 ~~~~~~~~~~~lgi~~~~~v~iGDs~~~------Di~~a~~~G~~~i~v~~~ 243 (280)
.+.=...+++++++ ++.-=||- . -+++|.++|+.+|++.++
T Consensus 185 -~~~n~all~q~~id---~vItK~SG-~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 185 -EEDNKALLEQYRID---VVVTKNSG-GAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred -hHHHHHHHHHhCCC---EEEEccCC-cccCcHHHHHHHHHcCCcEEEEecC
Confidence 22345677888875 66665655 4 499999999999999974
No 246
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=79.89 E-value=34 Score=28.54 Aligned_cols=61 Identities=7% Similarity=0.090 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCCCCcEEEEcCC------chhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHh
Q 023578 201 PLLHICSTWEVQPNEVMMVGDS------LKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEA 274 (280)
Q Consensus 201 ~~~~~~~~lgi~~~~~v~iGDs------~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~ 274 (280)
.=..+++++|++ +++-=|| . .=+++|++.|+.++++.++.. ..+..++.+++|+.+++.+
T Consensus 188 ~n~al~~~~~i~---~lVtK~SG~~Gg~~-eKi~AA~~lgi~vivI~RP~~----------~~~~~~~~~~~el~~~l~~ 253 (256)
T TIGR00715 188 LEKALLREYRID---AVVTKASGEQGGEL-EKVKAAEALGINVIRIARPQT----------IPGVAIFDDISQLNQFVAR 253 (256)
T ss_pred HHHHHHHHcCCC---EEEEcCCCCccchH-HHHHHHHHcCCcEEEEeCCCC----------CCCCccCCCHHHHHHHHHH
Confidence 335677778775 4554444 4 568899999999999986321 1234567899999999886
Q ss_pred c
Q 023578 275 N 275 (280)
Q Consensus 275 ~ 275 (280)
+
T Consensus 254 ~ 254 (256)
T TIGR00715 254 L 254 (256)
T ss_pred h
Confidence 5
No 247
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.74 E-value=14 Score=32.80 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=42.0
Q ss_pred ccceeeCCCCCCCCChHHHHHHHHhcC-CCCCcEEEEcCCchhhHHHHHHc-------CCcEEEEcC
Q 023578 184 FSPALSREFRPYKPDPGPLLHICSTWE-VQPNEVMMVGDSLKDDVACGKRA-------GAFTCLLDE 242 (280)
Q Consensus 184 fd~v~~~~~~~~Kp~~~~~~~~~~~lg-i~~~~~v~iGDs~~~Di~~a~~~-------G~~~i~v~~ 242 (280)
||.|+....+..|-....|+...+--+ +.|+++++|=|.. ..-.+...+ ++..+-++-
T Consensus 184 fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas-iGQaae~Qa~aFk~~vdvg~vIlTK 249 (483)
T KOG0780|consen 184 FDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS-IGQAAEAQARAFKETVDVGAVILTK 249 (483)
T ss_pred CcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecc-ccHhHHHHHHHHHHhhccceEEEEe
Confidence 777777667777888888888777655 5899999999988 776665443 555555543
No 248
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=78.87 E-value=3.1 Score=39.10 Aligned_cols=52 Identities=10% Similarity=0.036 Sum_probs=43.2
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---c-cceeeCCC
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---F-SPALSREF 192 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---f-d~v~~~~~ 192 (280)
..+++.|++.++|+.+.+. +.+.|+|=+.+.++..+++.+.-. | +.|+|.+.
T Consensus 198 ~~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde 253 (635)
T KOG0323|consen 198 YLVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDE 253 (635)
T ss_pred EEEEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhCCCCccccceEEEecC
Confidence 3467899999999999987 999999999999999999887755 5 44777553
No 249
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=77.72 E-value=9.1 Score=33.84 Aligned_cols=99 Identities=21% Similarity=0.225 Sum_probs=67.2
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHH-HHcCCc----ccceeeCC----------------CC---------
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFH-NRFGIT----FSPALSRE----------------FR--------- 193 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l-~~~g~~----fd~v~~~~----------------~~--------- 193 (280)
..+....++..+++.|-++.++||+.-.+..... ..+|.+ |+.++... ..
T Consensus 199 ~d~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~ 278 (424)
T KOG2469|consen 199 YDGTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDN 278 (424)
T ss_pred ecCccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeecccccccccccc
Confidence 3444555999999999999999998777666554 334433 55543321 00
Q ss_pred ------CCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHH-HHcCCcEEEEcC
Q 023578 194 ------PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACG-KRAGAFTCLLDE 242 (280)
Q Consensus 194 ------~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a-~~~G~~~i~v~~ 242 (280)
.+.+.+...+.+++.++....+++++||+.-.|+..- +.-|+.++.|..
T Consensus 279 ~~p~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~p 334 (424)
T KOG2469|consen 279 TGPLEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAP 334 (424)
T ss_pred CCcchhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEeh
Confidence 2233445677888888888899999999984565443 456888888763
No 250
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=76.96 E-value=48 Score=28.66 Aligned_cols=95 Identities=13% Similarity=0.118 Sum_probs=66.1
Q ss_pred CCcccCcCHHHHHHHhhhC---CCeEEEEeCCchHHHHHHHHHcCCc----ccceeeCCCCCCCCChHHHHHHHHhcCCC
Q 023578 140 DRLQIMPGTAQLCGFLDSK---KIRRGLITRNIKEAVDLFHNRFGIT----FSPALSREFRPYKPDPGPLLHICSTWEVQ 212 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~---g~~i~ivS~~~~~~~~~~l~~~g~~----fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~ 212 (280)
+...+.|+..+.++..++. |+.+.++++.+....+ .+..+|-. .-.-+++..+. .+|+.++.+.+...++
T Consensus 175 e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~-~l~~~g~~avmPl~~pIGsg~gv--~~p~~i~~~~e~~~vp 251 (326)
T PRK11840 175 DAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAK-RLEDAGAVAVMPLGAPIGSGLGI--QNPYTIRLIVEGATVP 251 (326)
T ss_pred CCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH-HHHhcCCEEEeeccccccCCCCC--CCHHHHHHHHHcCCCc
Confidence 3446688898888888877 9999666666555444 44566653 13334433333 3789999999985543
Q ss_pred CCcEEEEcC---CchhhHHHHHHcCCcEEEEcC
Q 023578 213 PNEVMMVGD---SLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 213 ~~~~v~iGD---s~~~Di~~a~~~G~~~i~v~~ 242 (280)
+.+|- ++ .|+..|.+.|...++++.
T Consensus 252 ----VivdAGIg~~-sda~~AmelGadgVL~nS 279 (326)
T PRK11840 252 ----VLVDAGVGTA-SDAAVAMELGCDGVLMNT 279 (326)
T ss_pred ----EEEeCCCCCH-HHHHHHHHcCCCEEEEcc
Confidence 55655 34 799999999999999985
No 251
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=76.71 E-value=5 Score=34.09 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=31.2
Q ss_pred CcccCcCHHHHHHHhhhCC-CeEEEEeCCchHHHHHHHHHcC
Q 023578 141 RLQIMPGTAQLCGFLDSKK-IRRGLITRNIKEAVDLFHNRFG 181 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g-~~i~ivS~~~~~~~~~~l~~~g 181 (280)
+..++|.+.++++.+++.| ++++++||+..+. +++.+.
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgslpd---v~~~L~ 128 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPD---VLEELK 128 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCChHH---HHHHhc
Confidence 4578999999999999999 7999999999743 444444
No 252
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=74.82 E-value=26 Score=32.29 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=22.5
Q ss_pred HHhhhCCCeEEEEeCCchHHHHHHHHH-cCCcccceeeCC
Q 023578 153 GFLDSKKIRRGLITRNIKEAVDLFHNR-FGITFSPALSRE 191 (280)
Q Consensus 153 ~~L~~~g~~i~ivS~~~~~~~~~~l~~-~g~~fd~v~~~~ 191 (280)
+-++.-| +.+++|..++.+++..++. +|. |.|++.|
T Consensus 140 ~v~~~~~-~~~vv~~~PrvMve~Flkeyl~~--d~V~g~E 176 (525)
T PLN02588 140 QVLKRGG-KRVGVSDLPQVMIDVFLRDYLEI--EVVVGRD 176 (525)
T ss_pred HHHhhcC-cEEEEecCCHHHHHHHHHHhcCc--ceEeeee
Confidence 3334444 4556666999999998854 554 5555544
No 253
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=74.46 E-value=6.6 Score=34.44 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=31.3
Q ss_pred ChHHHHHHHHhc----CCCCCcEEEEcCCc----hhhHHHHHHcCCcEEEEcC
Q 023578 198 DPGPLLHICSTW----EVQPNEVMMVGDSL----KDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 198 ~~~~~~~~~~~l----gi~~~~~v~iGDs~----~~Di~~a~~~G~~~i~v~~ 242 (280)
|..+...+.+-+ ++.++++++|||.. .||.+ |+.+|. |+||.+
T Consensus 350 Ks~GV~~lQ~y~~~~~~i~~~~tLHVGDQF~s~GaNDfk-aR~a~~-t~WIas 400 (408)
T PF06437_consen 350 KSLGVRALQKYFDPEGGIKPSETLHVGDQFLSAGANDFK-ARLACT-TAWIAS 400 (408)
T ss_pred cHHhHHHHHHHHHhccCCCccceeeehhhhhccCCcchh-hhhhce-eeEecC
Confidence 457777777777 89999999999953 16664 455654 788874
No 254
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=74.02 E-value=2 Score=27.05 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=16.4
Q ss_pred HHHHHHhcCCCCCcEEEEcCCchhhHHHHH
Q 023578 202 LLHICSTWEVQPNEVMMVGDSLKDDVACGK 231 (280)
Q Consensus 202 ~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~ 231 (280)
.++.++++|+ .+++||.. +|+++..
T Consensus 7 VqQLLK~fG~----~IY~gdr~-~DielM~ 31 (62)
T PF06014_consen 7 VQQLLKKFGI----IIYVGDRL-WDIELME 31 (62)
T ss_dssp HHHHHHTTS---------S-HH-HHHHHHH
T ss_pred HHHHHHHCCE----EEEeCChH-HHHHHHH
Confidence 4688999997 69999999 9999875
No 255
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=73.35 E-value=8 Score=31.59 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=32.5
Q ss_pred HHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc-ccceee
Q 023578 150 QLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FSPALS 189 (280)
Q Consensus 150 ~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-fd~v~~ 189 (280)
++++ ++++|++++++|++....+..+++.+++. .+.+++
T Consensus 22 ~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~~~~~~I~ 61 (236)
T TIGR02471 22 ELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLPSPDVLIA 61 (236)
T ss_pred HHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCCCCCEEEE
Confidence 4666 58889999999999999999999999886 555555
No 256
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=73.25 E-value=25 Score=26.03 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=52.0
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHH-HHHHHHc----CCc--ccceee-CCCC------CCCCChHHHHHHHHh
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAV-DLFHNRF----GIT--FSPALS-REFR------PYKPDPGPLLHICST 208 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~-~~~l~~~----g~~--fd~v~~-~~~~------~~Kp~~~~~~~~~~~ 208 (280)
.....+.+++....++|-++.++-|+..... .....++ +.. ....+. .+.. ..-.++..-+.+.+.
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLAL 98 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHH
Confidence 3445566677777788889999998876443 2233322 222 111222 1110 111223456778888
Q ss_pred cCCCCCcEEEE----cCCchhhHHH---HHHcCCcEEEEc
Q 023578 209 WEVQPNEVMMV----GDSLKDDVAC---GKRAGAFTCLLD 241 (280)
Q Consensus 209 lgi~~~~~v~i----GDs~~~Di~~---a~~~G~~~i~v~ 241 (280)
+.+.|.+++++ |.++ +=+++ |++.|+.+|.++
T Consensus 99 ~~~~~gDvli~iS~SG~s~-~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 99 YDIRPGDVLIVISNSGNSP-NVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp TT--TT-EEEEEESSS-SH-HHHHHHHHHHHTT-EEEEEE
T ss_pred cCCCCCCEEEEECCCCCCH-HHHHHHHHHHHCCCEEEEEe
Confidence 88889998876 6666 65555 455699999875
No 257
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=72.57 E-value=14 Score=37.25 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCcccceeeCC------CCCCCCChHHHHHHHHhcCCCCCcE-EEEcCCchh-hHHHHHHcCCcEEEEc
Q 023578 171 EAVDLFHNRFGITFSPALSRE------FRPYKPDPGPLLHICSTWEVQPNEV-MMVGDSLKD-DVACGKRAGAFTCLLD 241 (280)
Q Consensus 171 ~~~~~~l~~~g~~fd~v~~~~------~~~~Kp~~~~~~~~~~~lgi~~~~~-v~iGDs~~~-Di~~a~~~G~~~i~v~ 241 (280)
..++..++..|+....+++.. ....-.+...+.++..++|++.+++ ||+|||. + |++....--..+|.+.
T Consensus 924 ~elr~~Lr~~gLr~~~iys~~~~~LDVlP~~ASKgqAlRyL~~rwgi~l~~v~VfaGdSG-ntD~e~Ll~G~~~tvi~~ 1001 (1050)
T TIGR02468 924 KELRKLLRIQGLRCHAVYCRNGTRLNVIPLLASRSQALRYLFVRWGIELANMAVFVGESG-DTDYEGLLGGLHKTVILK 1001 (1050)
T ss_pred HHHHHHHHhCCCceEEEeecCCcEeeeeeCCCCHHHHHHHHHHHcCCChHHeEEEeccCC-CCCHHHHhCCceeEEEEe
Confidence 456667777777645555532 2244456789999999999999999 5699999 8 9887633223445444
No 258
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=72.07 E-value=25 Score=32.77 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=53.2
Q ss_pred CHHHHHHHhhhCCCeEEEEeCC-chHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchh
Q 023578 147 GTAQLCGFLDSKKIRRGLITRN-IKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKD 225 (280)
Q Consensus 147 g~~~~l~~L~~~g~~i~ivS~~-~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~ 225 (280)
++...|...++.+-++++++-. ....++.+.+.++++++.+.-.+. -+......-+++-|++ ++|||..
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~----~e~~~~~~~l~~~G~~----~viG~~~-- 154 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTE----EDARSCVNDLRARGIG----AVVGAGL-- 154 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCH----HHHHHHHHHHHHCCCC----EEECChH--
Confidence 3444555556667788888853 334456666778877443211110 0112233344455664 7889998
Q ss_pred hHHHHHHcCCcEEEEcC
Q 023578 226 DVACGKRAGAFTCLLDE 242 (280)
Q Consensus 226 Di~~a~~~G~~~i~v~~ 242 (280)
-...|+++|+..+.+..
T Consensus 155 ~~~~A~~~gl~~ili~s 171 (526)
T TIGR02329 155 ITDLAEQAGLHGVFLYS 171 (526)
T ss_pred HHHHHHHcCCceEEEec
Confidence 47899999999999874
No 259
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=72.01 E-value=9.8 Score=33.15 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=52.4
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeC----CCCCCCCChHHHHHHHHhcCCCCCcEEE
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSR----EFRPYKPDPGPLLHICSTWEVQPNEVMM 218 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~----~~~~~Kp~~~~~~~~~~~lgi~~~~~v~ 218 (280)
.-.||+.-++..+. +.+.|+++|+.....+..++++++-. +.+++ +....+.-. - .+-+..++-++..+++
T Consensus 214 ~kRPgvD~FL~~~a-~~yEIVi~sse~gmt~~pl~d~lDP~--g~IsYkLfr~~t~y~~G~-H-vKdls~LNRdl~kViv 288 (393)
T KOG2832|consen 214 KKRPGVDYFLGHLA-KYYEIVVYSSEQGMTVFPLLDALDPK--GYISYKLFRGATKYEEGH-H-VKDLSKLNRDLQKVIV 288 (393)
T ss_pred ccCchHHHHHHhhc-ccceEEEEecCCccchhhhHhhcCCc--ceEEEEEecCcccccCcc-c-hhhhhhhccccceeEE
Confidence 45789988999988 45999999999888888899888653 22222 111111110 0 2336778889999999
Q ss_pred EcCCc
Q 023578 219 VGDSL 223 (280)
Q Consensus 219 iGDs~ 223 (280)
|+=..
T Consensus 289 Vd~d~ 293 (393)
T KOG2832|consen 289 VDFDA 293 (393)
T ss_pred EEccc
Confidence 98766
No 260
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=70.28 E-value=11 Score=36.07 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=34.9
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~ 183 (280)
..+...+.|+.++++|++++++|+.....+....+.+++.
T Consensus 434 i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 434 SYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIK 473 (694)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 3445678999999999999999999999999999999874
No 261
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=69.68 E-value=63 Score=26.75 Aligned_cols=94 Identities=14% Similarity=0.064 Sum_probs=63.7
Q ss_pred CcccCcCHHHHHHHhhhC---CCeEEEEeCCchHHHHHHHHHcCCc-c---cceeeCCCCCCCCChHHHHHHHHhcCCCC
Q 023578 141 RLQIMPGTAQLCGFLDSK---KIRRGLITRNIKEAVDLFHNRFGIT-F---SPALSREFRPYKPDPGPLLHICSTWEVQP 213 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~---g~~i~ivS~~~~~~~~~~l~~~g~~-f---d~v~~~~~~~~Kp~~~~~~~~~~~lgi~~ 213 (280)
.-.+.|+..+.++..++. |+.+.-+++.+....+ .+..+|-. . -.-+++. .+-.+++.++.+.++.+++
T Consensus 102 ~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar-~l~~~G~~~vmPlg~pIGsg--~Gi~~~~~I~~I~e~~~vp- 177 (248)
T cd04728 102 DKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAK-RLEDAGCAAVMPLGSPIGSG--QGLLNPYNLRIIIERADVP- 177 (248)
T ss_pred ccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH-HHHHcCCCEeCCCCcCCCCC--CCCCCHHHHHHHHHhCCCc-
Confidence 446789999988888877 9999955555545444 44566765 1 1223333 3344578888888875543
Q ss_pred CcEEEEcC---CchhhHHHHHHcCCcEEEEcC
Q 023578 214 NEVMMVGD---SLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 214 ~~~v~iGD---s~~~Di~~a~~~G~~~i~v~~ 242 (280)
|.+|- ++ .|+..|.+.|...++++.
T Consensus 178 ---VI~egGI~tp-eda~~AmelGAdgVlV~S 205 (248)
T cd04728 178 ---VIVDAGIGTP-SDAAQAMELGADAVLLNT 205 (248)
T ss_pred ---EEEeCCCCCH-HHHHHHHHcCCCEEEECh
Confidence 44443 46 799999999999999974
No 262
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=68.16 E-value=25 Score=27.76 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=43.9
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---------ccceeeCCCCCCCCCh----------HHHHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---------FSPALSREFRPYKPDP----------GPLLHI 205 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---------fd~v~~~~~~~~Kp~~----------~~~~~~ 205 (280)
.+++.++.+.|.+.|++++ .|.+. ...++..|+. |..+..+.++.-.|+- +-=. .
T Consensus 10 K~~l~~lAk~L~~lGf~I~-AT~GT----Ak~L~e~GI~v~~V~k~TgfpE~l~GRVKTLHP~ihggiL~~~~~~~~~-~ 83 (187)
T cd01421 10 KTGLVEFAKELVELGVEIL-STGGT----AKFLKEAGIPVTDVSDITGFPEILGGRVKTLHPKIHGGILARRDNEEHK-D 83 (187)
T ss_pred cccHHHHHHHHHHCCCEEE-EccHH----HHHHHHcCCeEEEhhhccCCcHhhCCccccCChhhhhhhhcCCCChhHH-H
Confidence 6889999999999999985 66654 3455677775 3334444433222221 1111 5
Q ss_pred HHhcCCCCCcEEEEc
Q 023578 206 CSTWEVQPNEVMMVG 220 (280)
Q Consensus 206 ~~~lgi~~~~~v~iG 220 (280)
++++|+.+=++|+|.
T Consensus 84 ~~~~~i~~idlVvvN 98 (187)
T cd01421 84 LEEHGIEPIDLVVVN 98 (187)
T ss_pred HHHcCCCCeeEEEEc
Confidence 777888877777664
No 263
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=68.06 E-value=18 Score=35.81 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=29.7
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCC
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI 182 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~ 182 (280)
++.+.....++.|.+.+++.+.+|+.+-...-.+.+.-|+
T Consensus 705 kLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVakeCgm 744 (1140)
T KOG0208|consen 705 KLKEETKRVIDELNRANIRTVMCTGDNLLTAISVAKECGM 744 (1140)
T ss_pred ccccccHHHHHHHHhhcceEEEEcCCchheeeehhhcccc
Confidence 5678899999999999999999998654443334444443
No 264
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=68.06 E-value=13 Score=30.22 Aligned_cols=90 Identities=13% Similarity=0.174 Sum_probs=60.6
Q ss_pred cccCcCHH-HHHHHhhhCCCeEEEEeCCchH-----HHHHHHHHcCCc--ccceeeCCCCCCCCChHHHHHHHHhcCCCC
Q 023578 142 LQIMPGTA-QLCGFLDSKKIRRGLITRNIKE-----AVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQP 213 (280)
Q Consensus 142 ~~~~pg~~-~~l~~L~~~g~~i~ivS~~~~~-----~~~~~l~~~g~~--fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~ 213 (280)
..+.|++. ++.+.++++|.+.+|+...... .++..++.+|+. |...+|+-...++| .+...++.+|-+.
T Consensus 58 y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~p---~i~~F~~~fGkP~ 134 (217)
T PF02593_consen 58 YGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEENGNP---QIDEFAEYFGKPK 134 (217)
T ss_pred eccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCccccccCCCCCh---hHHHHHHHhCCce
Confidence 35678875 7788888899999999886655 788888999987 55555543333343 6777788899654
Q ss_pred CcEEEEcCCchhhHHHHHHcCC
Q 023578 214 NEVMMVGDSLKDDVACGKRAGA 235 (280)
Q Consensus 214 ~~~v~iGDs~~~Di~~a~~~G~ 235 (280)
=++ .++|+...|++..+.+=+
T Consensus 135 ~ei-~v~~~~I~~V~VlR~aPC 155 (217)
T PF02593_consen 135 VEI-EVENGKIKDVKVLRSAPC 155 (217)
T ss_pred EEE-EecCCcEEEEEEEecCCC
Confidence 444 344433266666555543
No 265
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=66.22 E-value=6.7 Score=33.56 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=36.9
Q ss_pred CCCCChHHHHHHHH-------hcC-C-CCCcEEEEcCCchhhHHHHH---------------HcCCcEEEEcC
Q 023578 194 PYKPDPGPLLHICS-------TWE-V-QPNEVMMVGDSLKDDVACGK---------------RAGAFTCLLDE 242 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~-------~lg-i-~~~~~v~iGDs~~~Di~~a~---------------~~G~~~i~v~~ 242 (280)
.+||.+-.|+.+.. ..+ . ++.+..+|||+++.|+..|. .-||..|+|..
T Consensus 269 ~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~T 341 (389)
T KOG1618|consen 269 LGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRT 341 (389)
T ss_pred cCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEee
Confidence 67888776655433 223 2 56789999999999999996 66888888875
No 266
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=66.17 E-value=37 Score=31.77 Aligned_cols=86 Identities=14% Similarity=0.125 Sum_probs=53.7
Q ss_pred CHHHHHHHhhhCCCeEEEEeCC-chHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchh
Q 023578 147 GTAQLCGFLDSKKIRRGLITRN-IKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKD 225 (280)
Q Consensus 147 g~~~~l~~L~~~g~~i~ivS~~-~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~ 225 (280)
++...|...++.+-++++++-. ....++.+.+.++++++.+.-.+ ..+......-+++-|++ ++|||..
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~----~~e~~~~v~~lk~~G~~----~vvG~~~-- 164 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVT----EEDARGQINELKANGIE----AVVGAGL-- 164 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecC----HHHHHHHHHHHHHCCCC----EEEcCch--
Confidence 3444555556667789998853 34455667777887744321111 01112333445556765 7889988
Q ss_pred hHHHHHHcCCcEEEEcC
Q 023578 226 DVACGKRAGAFTCLLDE 242 (280)
Q Consensus 226 Di~~a~~~G~~~i~v~~ 242 (280)
-...|.++|+..+++.+
T Consensus 165 ~~~~A~~~g~~g~~~~s 181 (538)
T PRK15424 165 ITDLAEEAGMTGIFIYS 181 (538)
T ss_pred HHHHHHHhCCceEEecC
Confidence 48999999999998863
No 267
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=65.49 E-value=76 Score=26.12 Aligned_cols=82 Identities=12% Similarity=0.123 Sum_probs=53.6
Q ss_pred CCCeEEEEeCCchH---HHHHHHHHc--CCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchh-hHHHHH
Q 023578 158 KKIRRGLITRNIKE---AVDLFHNRF--GITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKD-DVACGK 231 (280)
Q Consensus 158 ~g~~i~ivS~~~~~---~~~~~l~~~--g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~-Di~~a~ 231 (280)
.++.+.+++++..- .++...... .++.|.++-...+..-|-|..-+..++..|++ |+.|||.+-. +-...+
T Consensus 30 edI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP---~IvI~D~p~~K~~d~l~ 106 (277)
T PRK00994 30 EDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIP---CIVIGDAPGKKVKDAME 106 (277)
T ss_pred cCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCC---EEEEcCCCccchHHHHH
Confidence 38899999886532 222222222 22245544434444567778888899988885 9999998821 447778
Q ss_pred HcCCcEEEEcC
Q 023578 232 RAGAFTCLLDE 242 (280)
Q Consensus 232 ~~G~~~i~v~~ 242 (280)
+.|+..|.+..
T Consensus 107 ~~g~GYIivk~ 117 (277)
T PRK00994 107 EQGLGYIIVKA 117 (277)
T ss_pred hcCCcEEEEec
Confidence 88998888763
No 268
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=65.10 E-value=12 Score=29.18 Aligned_cols=81 Identities=7% Similarity=0.043 Sum_probs=49.4
Q ss_pred HHHHHHHhhhCCCeEEEEeCCchHH-HHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHh---cCCCCCcEEEEcCCc
Q 023578 148 TAQLCGFLDSKKIRRGLITRNIKEA-VDLFHNRFGITFSPALSREFRPYKPDPGPLLHICST---WEVQPNEVMMVGDSL 223 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~~~~-~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~---lgi~~~~~v~iGDs~ 223 (280)
+...|..+++.+-++++++-.+... ...+.+.+|+++...... +++-+...+++ -|++ ++||+..
T Consensus 66 il~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~-------~~~e~~~~i~~~~~~G~~----viVGg~~ 134 (176)
T PF06506_consen 66 ILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYD-------SEEEIEAAIKQAKAEGVD----VIVGGGV 134 (176)
T ss_dssp HHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEES-------SHHHHHHHHHHHHHTT------EEEESHH
T ss_pred HHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEEC-------CHHHHHHHHHHHHHcCCc----EEECCHH
Confidence 4444555556677899998644332 566667778763322111 12344445444 3554 7999998
Q ss_pred hhhHHHHHHcCCcEEEEc
Q 023578 224 KDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 224 ~~Di~~a~~~G~~~i~v~ 241 (280)
-...|++.|+.++.+.
T Consensus 135 --~~~~A~~~gl~~v~i~ 150 (176)
T PF06506_consen 135 --VCRLARKLGLPGVLIE 150 (176)
T ss_dssp --HHHHHHHTTSEEEESS
T ss_pred --HHHHHHHcCCcEEEEE
Confidence 4889999999999876
No 269
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=63.57 E-value=75 Score=25.38 Aligned_cols=84 Identities=12% Similarity=0.102 Sum_probs=56.4
Q ss_pred HHHHH-HHhhhCCCeEEEEeCCc----hHHHHHHHHHcCCcccceeeCCC-C----CCCCChHHHHHHHHhcCCCCCcEE
Q 023578 148 TAQLC-GFLDSKKIRRGLITRNI----KEAVDLFHNRFGITFSPALSREF-R----PYKPDPGPLLHICSTWEVQPNEVM 217 (280)
Q Consensus 148 ~~~~l-~~L~~~g~~i~ivS~~~----~~~~~~~l~~~g~~fd~v~~~~~-~----~~Kp~~~~~~~~~~~lgi~~~~~v 217 (280)
+.++. ...++.+--.+++||.. ...++.+++.-|+.||.+.-.-. + .-+=|...+..+++.+. ..+++-
T Consensus 59 Iv~la~~S~~~~dtltVLLTGR~e~~F~~lI~~ml~s~~L~Fd~v~LKp~~~~~~sTm~fK~~~l~~ll~~Y~-~~~eI~ 137 (197)
T PF10307_consen 59 IVELARLSMQDPDTLTVLLTGRRESKFSSLIERMLASKGLEFDAVCLKPENQRFSSTMDFKQAFLEDLLHTYK-NAEEIR 137 (197)
T ss_pred HHHHHHHhhcCCCeeEEEEeCCCchhHHHHHHHHHhcCCCCccEEEeCcccccCccccHHHHHHHHHHHHhcC-CCCEEE
Confidence 44443 33455567788999865 34566677777888888754211 1 11223456777788887 789999
Q ss_pred EEcCCchhhHHHHHHc
Q 023578 218 MVGDSLKDDVACGKRA 233 (280)
Q Consensus 218 ~iGDs~~~Di~~a~~~ 233 (280)
+.+|.. .=++..+..
T Consensus 138 IYeDR~-~hvk~Fr~F 152 (197)
T PF10307_consen 138 IYEDRP-KHVKGFRDF 152 (197)
T ss_pred EEcCCH-HHHHHHHHH
Confidence 999999 888887764
No 270
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=62.95 E-value=34 Score=27.49 Aligned_cols=88 Identities=9% Similarity=0.099 Sum_probs=52.3
Q ss_pred HHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---ccceeeCCCC---CCCCChHHHHHHHHhcCCCCCcEEEEc-
Q 023578 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPALSREFR---PYKPDPGPLLHICSTWEVQPNEVMMVG- 220 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---fd~v~~~~~~---~~Kp~~~~~~~~~~~lgi~~~~~v~iG- 220 (280)
+.+.++.+++.|+++++---+.....-..+..+..+ +|.-+..+.. ....--..+...++.+|+ .+++=|
T Consensus 134 ~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~via~gV 210 (240)
T cd01948 134 ALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGL---KVVAEGV 210 (240)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCC---eEEEEec
Confidence 788999999999999984323333333345555544 3322211111 111112334455556665 477777
Q ss_pred CCchhhHHHHHHcCCcEEE
Q 023578 221 DSLKDDVACGKRAGAFTCL 239 (280)
Q Consensus 221 Ds~~~Di~~a~~~G~~~i~ 239 (280)
++. .+.+.++..|+..+.
T Consensus 211 e~~-~~~~~~~~~gi~~~Q 228 (240)
T cd01948 211 ETE-EQLELLRELGCDYVQ 228 (240)
T ss_pred CCH-HHHHHHHHcCCCeee
Confidence 777 899999999997654
No 271
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=62.15 E-value=34 Score=30.81 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=64.8
Q ss_pred ccCcCHHHHHHHhhhC-CCeEEEEe-C-CchHHHHHHHHHcCCc-ccceeeCCCCCCCCChHHHHHHHHhcC-CCCCcEE
Q 023578 143 QIMPGTAQLCGFLDSK-KIRRGLIT-R-NIKEAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICSTWE-VQPNEVM 217 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~-g~~i~ivS-~-~~~~~~~~~l~~~g~~-fd~v~~~~~~~~Kp~~~~~~~~~~~lg-i~~~~~v 217 (280)
...|++.+-|+.|.++ |++++-.. + .+.+.++..++.+... +|.++....+...-+.+.+..+.+-.. +.|+|++
T Consensus 138 ~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~l 217 (451)
T COG0541 138 TYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETL 217 (451)
T ss_pred cCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEE
Confidence 4467777777777665 55555542 2 2333456666665555 677766556666667777777777665 4899999
Q ss_pred EEcCCchhhHHHHHH-------cCCcEEEEcC
Q 023578 218 MVGDSLKDDVACGKR-------AGAFTCLLDE 242 (280)
Q Consensus 218 ~iGDs~~~Di~~a~~-------~G~~~i~v~~ 242 (280)
+|=|+. ..-.+... .|+..|.++.
T Consensus 218 lVvDam-~GQdA~~~A~aF~e~l~itGvIlTK 248 (451)
T COG0541 218 LVVDAM-IGQDAVNTAKAFNEALGITGVILTK 248 (451)
T ss_pred EEEecc-cchHHHHHHHHHhhhcCCceEEEEc
Confidence 999988 76655543 3777776664
No 272
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=61.74 E-value=15 Score=31.87 Aligned_cols=29 Identities=14% Similarity=0.191 Sum_probs=25.6
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchH
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKE 171 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~ 171 (280)
.+.|.+.++++.++++|+.+.+.||+...
T Consensus 142 lL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 142 TLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred cchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 45789999999999999999999999653
No 273
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=60.47 E-value=30 Score=29.47 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.4
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCC
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRN 168 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~ 168 (280)
-||+..+-+.|+..|.++.++|+.
T Consensus 62 P~GA~aLa~aL~~lG~~~~ivtd~ 85 (291)
T PF14336_consen 62 PPGAAALARALQALGKEVVIVTDE 85 (291)
T ss_pred hHHHHHHHHHHHHcCCeEEEEECH
Confidence 478999999999999999999984
No 274
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=59.85 E-value=67 Score=28.51 Aligned_cols=90 Identities=21% Similarity=0.197 Sum_probs=56.7
Q ss_pred HHHHHHhhhCC-C-eEEEEeCCch--HHHHHHHHHcCCc-ccceeeCCCCCCCCChH-------HHHHHHHhcCCCCCcE
Q 023578 149 AQLCGFLDSKK-I-RRGLITRNIK--EAVDLFHNRFGIT-FSPALSREFRPYKPDPG-------PLLHICSTWEVQPNEV 216 (280)
Q Consensus 149 ~~~l~~L~~~g-~-~i~ivS~~~~--~~~~~~l~~~g~~-fd~v~~~~~~~~Kp~~~-------~~~~~~~~lgi~~~~~ 216 (280)
..+++++.+++ + ..+++|+..+ ++....++.+++. .|..+.. ...+..-.+ .+..+++ ...|+-+
T Consensus 20 apli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i-~~~~~tl~~~t~~~i~~~~~vl~--~~kPD~V 96 (383)
T COG0381 20 APLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNI-MKPGQTLGEITGNIIEGLSKVLE--EEKPDLV 96 (383)
T ss_pred hHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhc-cccCCCHHHHHHHHHHHHHHHHH--hhCCCEE
Confidence 34778888875 4 4677888777 8889999999987 3322110 001111112 2333444 3478999
Q ss_pred EEEcCCchhhHHHHHHc---CCcEEEEcC
Q 023578 217 MMVGDSLKDDVACGKRA---GAFTCLLDE 242 (280)
Q Consensus 217 v~iGDs~~~Di~~a~~~---G~~~i~v~~ 242 (280)
++-||.. .=+.+|.++ .+.+..+.-
T Consensus 97 lVhGDT~-t~lA~alaa~~~~IpV~HvEA 124 (383)
T COG0381 97 LVHGDTN-TTLAGALAAFYLKIPVGHVEA 124 (383)
T ss_pred EEeCCcc-hHHHHHHHHHHhCCceEEEec
Confidence 9999999 877755443 677777764
No 275
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=59.51 E-value=18 Score=28.60 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=28.1
Q ss_pred HHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCC------c-ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCC
Q 023578 150 QLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI------T-FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (280)
Q Consensus 150 ~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~------~-fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs 222 (280)
.+|..++++|++++++.+...........+++. . ||.++.-+ +.-..-+.++|++++++...||-
T Consensus 109 nll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs--------~~da~r~~~lG~~~~~v~v~Gnl 180 (186)
T PF04413_consen 109 NLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQS--------EADAERFRKLGAPPERVHVTGNL 180 (186)
T ss_dssp HHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESS--------HHHHHHHHTTT-S--SEEE---G
T ss_pred HHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECC--------HHHHHHHHHcCCCcceEEEeCcc
Confidence 478899999999999998655433222222221 1 56665422 23346678899999999999987
Q ss_pred chhhH
Q 023578 223 LKDDV 227 (280)
Q Consensus 223 ~~~Di 227 (280)
. -|.
T Consensus 181 K-fd~ 184 (186)
T PF04413_consen 181 K-FDQ 184 (186)
T ss_dssp G-G--
T ss_pred h-hcc
Confidence 6 665
No 276
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=59.48 E-value=1e+02 Score=25.47 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=59.5
Q ss_pred CCcccCcCHHHHH---HHhhhCCCeEEEEeCCchHHHHHHHHHcCCccccee--eCC--CCCCCCChHHHHHHHHhcCCC
Q 023578 140 DRLQIMPGTAQLC---GFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPAL--SRE--FRPYKPDPGPLLHICSTWEVQ 212 (280)
Q Consensus 140 ~~~~~~pg~~~~l---~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~--~~~--~~~~Kp~~~~~~~~~~~lgi~ 212 (280)
+...+.|+..+.+ +.|.+.|+.|.-+++.+.. .-+.++..|-. .+. ++- .+.+--++..++.++++.+++
T Consensus 101 D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v-~akrL~d~Gca--avMPlgsPIGSg~Gi~n~~~l~~i~~~~~vP 177 (247)
T PF05690_consen 101 DDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPV-LAKRLEDAGCA--AVMPLGSPIGSGRGIQNPYNLRIIIERADVP 177 (247)
T ss_dssp -TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HH-HHHHHHHTT-S--EBEEBSSSTTT---SSTHHHHHHHHHHGSSS
T ss_pred CCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHH-HHHHHHHCCCC--EEEecccccccCcCCCCHHHHHHHHHhcCCc
Confidence 3445678877765 5567789999999987754 44566777864 221 121 234455678999999999876
Q ss_pred CCcEEEEcC---CchhhHHHHHHcCCcEEEEcC
Q 023578 213 PNEVMMVGD---SLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 213 ~~~~v~iGD---s~~~Di~~a~~~G~~~i~v~~ 242 (280)
+.|+- ++ +|...|.+.|+..|++|.
T Consensus 178 ----vIvDAGiG~p-Sdaa~AMElG~daVLvNT 205 (247)
T PF05690_consen 178 ----VIVDAGIGTP-SDAAQAMELGADAVLVNT 205 (247)
T ss_dssp ----BEEES---SH-HHHHHHHHTT-SEEEESH
T ss_pred ----EEEeCCCCCH-HHHHHHHHcCCceeehhh
Confidence 44443 45 799999999999999984
No 277
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=58.71 E-value=1.1e+02 Score=25.58 Aligned_cols=91 Identities=11% Similarity=0.047 Sum_probs=55.1
Q ss_pred HHHHhhhCCCeEEEEeCCchHHHH-----HHHHHcCCc---ccceeeCC-------CCCCCCChHHHHHHHHhcCCCCCc
Q 023578 151 LCGFLDSKKIRRGLITRNIKEAVD-----LFHNRFGIT---FSPALSRE-------FRPYKPDPGPLLHICSTWEVQPNE 215 (280)
Q Consensus 151 ~l~~L~~~g~~i~ivS~~~~~~~~-----~~l~~~g~~---fd~v~~~~-------~~~~Kp~~~~~~~~~~~lgi~~~~ 215 (280)
+.+.|+ +|-+++++-.|.....- ....++|.+ +..++.+. ......++......+...++.+++
T Consensus 42 ~~~~l~-~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~l~~~D 120 (257)
T cd05007 42 AAERLR-AGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAINLTERD 120 (257)
T ss_pred HHHHHH-cCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcCCCCCC
Confidence 444454 45688888877765433 344566765 33444332 123445566677777778887777
Q ss_pred EEEE----cCCc--hhhHHHHHHcCCcEEEEcC
Q 023578 216 VMMV----GDSL--KDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 216 ~v~i----GDs~--~~Di~~a~~~G~~~i~v~~ 242 (280)
++.+ |.++ ..-++.|++.|+.++.+..
T Consensus 121 vvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~ 153 (257)
T cd05007 121 VVIGIAASGRTPYVLGALRYARARGALTIGIAC 153 (257)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEEC
Confidence 6633 2222 0235677788999999984
No 278
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=57.59 E-value=56 Score=30.15 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=47.5
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---------ccceeeCCCCCC-----------CCChHHHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---------FSPALSREFRPY-----------KPDPGPLLH 204 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---------fd~v~~~~~~~~-----------Kp~~~~~~~ 204 (280)
.+++.++.+.|.+.|+.++ .|++.. ..++..|+. |..+..+.++.- +..++ ..
T Consensus 10 K~~iv~lAk~L~~lGfeIi-ATgGTa----k~L~e~GI~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLarr~~~~--~~ 82 (511)
T TIGR00355 10 KTGIVEFAQGLVERGVELL-STGGTA----KLLAEAGVPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILARRGDDD--DA 82 (511)
T ss_pred cccHHHHHHHHHHCCCEEE-EechHH----HHHHHCCCeEEEeecccCCchhhCCccccCCchhhhhhhcCCCchH--HH
Confidence 6889999999999999985 666653 456777875 444444443322 22233 67
Q ss_pred HHHhcCCCCCcEEEEcC
Q 023578 205 ICSTWEVQPNEVMMVGD 221 (280)
Q Consensus 205 ~~~~lgi~~~~~v~iGD 221 (280)
-++.+|+.+=+.|+|.=
T Consensus 83 ~l~~~~I~~IDlVvvNL 99 (511)
T TIGR00355 83 DLEEHGIEPIDLVVVNL 99 (511)
T ss_pred HHHHcCCCceeEEEEec
Confidence 78888998888877643
No 279
>PRK00208 thiG thiazole synthase; Reviewed
Probab=56.75 E-value=1.1e+02 Score=25.31 Aligned_cols=94 Identities=14% Similarity=0.068 Sum_probs=62.7
Q ss_pred CcccCcCHHHHHHHhhhC---CCeEEEEeCCchHHHHHHHHHcCCc-c---cceeeCCCCCCCCChHHHHHHHHhcCCCC
Q 023578 141 RLQIMPGTAQLCGFLDSK---KIRRGLITRNIKEAVDLFHNRFGIT-F---SPALSREFRPYKPDPGPLLHICSTWEVQP 213 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~---g~~i~ivS~~~~~~~~~~l~~~g~~-f---d~v~~~~~~~~Kp~~~~~~~~~~~lgi~~ 213 (280)
...+.|+..+.++..++. |+.+.-+++.+....+ .+..+|-+ . -.-+++.. +-.+++.++.+.+..+++
T Consensus 102 ~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak-~l~~~G~~~vmPlg~pIGsg~--gi~~~~~i~~i~e~~~vp- 177 (250)
T PRK00208 102 DKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAK-RLEEAGCAAVMPLGAPIGSGL--GLLNPYNLRIIIEQADVP- 177 (250)
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH-HHHHcCCCEeCCCCcCCCCCC--CCCCHHHHHHHHHhcCCe-
Confidence 445688888888888777 9999945555444444 45566765 1 12233333 333478888888875543
Q ss_pred CcEEEEcC---CchhhHHHHHHcCCcEEEEcC
Q 023578 214 NEVMMVGD---SLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 214 ~~~v~iGD---s~~~Di~~a~~~G~~~i~v~~ 242 (280)
|.+|- ++ .|+..+.+.|...++++.
T Consensus 178 ---VIveaGI~tp-eda~~AmelGAdgVlV~S 205 (250)
T PRK00208 178 ---VIVDAGIGTP-SDAAQAMELGADAVLLNT 205 (250)
T ss_pred ---EEEeCCCCCH-HHHHHHHHcCCCEEEECh
Confidence 55554 35 799999999999999974
No 280
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=56.66 E-value=44 Score=27.24 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=47.1
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHH---HHHHHHHcCCc------ccceeeCCCCCCCCChHHHHHHHHhcC-CCCC
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEA---VDLFHNRFGIT------FSPALSREFRPYKPDPGPLLHICSTWE-VQPN 214 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~---~~~~l~~~g~~------fd~v~~~~~~~~Kp~~~~~~~~~~~lg-i~~~ 214 (280)
.|.-...|..+++. ...|.+-..... ....+...|+. |-.++....+.+| ....+++.+. ....
T Consensus 136 lpre~aaLa~~rEy--seti~~rs~d~~~~~~~~~L~e~glt~v~garf~~v~~as~gKg~----Aa~~ll~~y~rl~~~ 209 (274)
T COG3769 136 LPREQAALAMLREY--SETIIWRSSDERMAQFTARLNERGLTFVHGARFWHVLDASAGKGQ----AANWLLETYRRLGGA 209 (274)
T ss_pred CChHHhHHHHHHHh--hhheeecccchHHHHHHHHHHhcCceEEeccceEEEeccccCccH----HHHHHHHHHHhcCce
Confidence 45555567777774 455555433332 33455666665 3333333333332 3333333322 1233
Q ss_pred -cEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 215 -EVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 215 -~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
-++.+||++ ||+.+.... ...+.|.
T Consensus 210 r~t~~~GDg~-nD~Pl~ev~-d~AfiV~ 235 (274)
T COG3769 210 RTTLGLGDGP-NDAPLLEVM-DYAFIVK 235 (274)
T ss_pred eEEEecCCCC-CcccHHHhh-hhheeec
Confidence 489999999 999987554 4444444
No 281
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=56.62 E-value=1e+02 Score=26.86 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=52.0
Q ss_pred HHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCC---CCCCh-----HHHHHHHHhcCCCCCcEEEEc
Q 023578 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRP---YKPDP-----GPLLHICSTWEVQPNEVMMVG 220 (280)
Q Consensus 149 ~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~---~Kp~~-----~~~~~~~~~lgi~~~~~v~iG 220 (280)
..++++|+++|+.+.|.+- ....+..+++.+|+++.. ++ ..+. .|-.. ..+..++++ .+|+ ++.-.
T Consensus 17 k~~I~eL~~~GheV~it~R-~~~~~~~LL~~yg~~y~~-iG-~~g~~~~~Kl~~~~~R~~~l~~~~~~--~~pD-v~is~ 90 (335)
T PF04007_consen 17 KNIIRELEKRGHEVLITAR-DKDETEELLDLYGIDYIV-IG-KHGDSLYGKLLESIERQYKLLKLIKK--FKPD-VAISF 90 (335)
T ss_pred HHHHHHHHhCCCEEEEEEe-ccchHHHHHHHcCCCeEE-Ec-CCCCCHHHHHHHHHHHHHHHHHHHHh--hCCC-EEEec
Confidence 4588999999998877774 446678899999975322 22 2221 11100 011112222 2444 44445
Q ss_pred CCchhhHHHHHHcCCcEEEEcC
Q 023578 221 DSLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 221 Ds~~~Di~~a~~~G~~~i~v~~ 242 (280)
.|. .-...|...|+++|.+.+
T Consensus 91 ~s~-~a~~va~~lgiP~I~f~D 111 (335)
T PF04007_consen 91 GSP-EAARVAFGLGIPSIVFND 111 (335)
T ss_pred CcH-HHHHHHHHhCCCeEEEec
Confidence 556 455588999999999987
No 282
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=56.09 E-value=6.8 Score=34.20 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=14.3
Q ss_pred CCccEEEEeCCCcccC
Q 023578 66 TRLRGVVFDMDGTLTV 81 (280)
Q Consensus 66 ~~~k~iiFD~DGTL~d 81 (280)
..++++-||||.||+.
T Consensus 10 ~~i~~~GFDmDyTLa~ 25 (343)
T TIGR02244 10 EKIQVFGFDMDYTLAQ 25 (343)
T ss_pred ccCCEEEECccccccc
Confidence 4699999999999994
No 283
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=55.31 E-value=37 Score=24.03 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=31.4
Q ss_pred HHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceee
Q 023578 150 QLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALS 189 (280)
Q Consensus 150 ~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~ 189 (280)
+....|++.|+++++++-++...++...+..+.+++ +++
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~-ly~ 42 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFPFP-LYV 42 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCCc-EEE
Confidence 456788899999999999888668888888777777 554
No 284
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=55.17 E-value=53 Score=31.36 Aligned_cols=95 Identities=16% Similarity=0.064 Sum_probs=66.9
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---cc--ceeeCC-----------------CCCCCCChH
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FS--PALSRE-----------------FRPYKPDPG 200 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---fd--~v~~~~-----------------~~~~Kp~~~ 200 (280)
+|..+..+.+++....|..+..+|+......+..-+++|.. +. ...+.+ .+..--.|+
T Consensus 492 pprhdsa~tirral~lGv~VkmitgdqlaI~keTgrrlgmgtnmypss~llG~~~~~~~~~~~v~elie~adgfAgVfpe 571 (942)
T KOG0205|consen 492 PPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFPE 571 (942)
T ss_pred CCccchHHHHHHHHhccceeeeecchHHHHHHhhhhhhccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCHH
Confidence 44667888899989999999999998777777777777765 11 111111 122223345
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEE
Q 023578 201 PLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTC 238 (280)
Q Consensus 201 ~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i 238 (280)
--..+.++++-..--|-+-||+. ||..+.+.+.+..+
T Consensus 572 hKy~iV~~Lq~r~hi~gmtgdgv-ndapaLKkAdigia 608 (942)
T KOG0205|consen 572 HKYEIVKILQERKHIVGMTGDGV-NDAPALKKADIGIA 608 (942)
T ss_pred HHHHHHHHHhhcCceecccCCCc-ccchhhccccccee
Confidence 55566777776666788999999 99999999987543
No 285
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=55.14 E-value=13 Score=21.73 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=26.3
Q ss_pred HHHHHHhhhCCCeEEEEeCCchHHHHHHHHHc
Q 023578 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRF 180 (280)
Q Consensus 149 ~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~ 180 (280)
.++.+.|++.|++.+=+|+..+..++..+..+
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~ 40 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLRKL 40 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHHHH
Confidence 46788999999999999999888887776543
No 286
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=54.45 E-value=1.6e+02 Score=26.42 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=29.1
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEE-eCCc---hHHHHHHHHHcCCc
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLI-TRNI---KEAVDLFHNRFGIT 183 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~iv-S~~~---~~~~~~~l~~~g~~ 183 (280)
..+|.+.++++.+++.|+++++. ||+. .......+..+|++
T Consensus 86 l~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld 130 (404)
T TIGR03278 86 SCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVR 130 (404)
T ss_pred ccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCC
Confidence 45789999999999999999995 9854 22223334455554
No 287
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=54.07 E-value=56 Score=32.31 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=35.1
Q ss_pred CCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 194 PYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
.-||+...--..++++|++ -++.=||+...-...|+++|+..|...
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~--v~mLTGDn~~aA~svA~~VGi~~V~ae 768 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIK--VVMLTGDNDAAARSVAQQVGIDNVYAE 768 (951)
T ss_pred ccchhHHHHHHHHHhcCce--EEEEcCCCHHHHHHHHHhhCcceEEec
Confidence 3466666667788888864 677889998678889999998777654
No 288
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=53.59 E-value=26 Score=28.33 Aligned_cols=38 Identities=5% Similarity=-0.093 Sum_probs=27.9
Q ss_pred ccCcC-HHHHHHHhhhCCCeEEEEeCCch--HHHHHHHHHc
Q 023578 143 QIMPG-TAQLCGFLDSKKIRRGLITRNIK--EAVDLFHNRF 180 (280)
Q Consensus 143 ~~~pg-~~~~l~~L~~~g~~i~ivS~~~~--~~~~~~l~~~ 180 (280)
.+.++ +.++++.+|+.|+.+++.||+.. +..+.++...
T Consensus 50 llq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~ 90 (213)
T PRK10076 50 LMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLC 90 (213)
T ss_pred HcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhc
Confidence 34566 58999999999999999999854 3444444443
No 289
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=51.68 E-value=1.6e+02 Score=25.36 Aligned_cols=86 Identities=9% Similarity=0.049 Sum_probs=52.2
Q ss_pred HHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceee--CCCC---CCCCChHHHHHHHHhcCCCCCcEEEEcCCch
Q 023578 150 QLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALS--REFR---PYKPDPGPLLHICSTWEVQPNEVMMVGDSLK 224 (280)
Q Consensus 150 ~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~--~~~~---~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~ 224 (280)
+++++++++|.++.....+ .+.. ..++..|. |.++. .+.+ ...+.-..+.++.+..+++ ++.-|+=..
T Consensus 100 ~~i~~lk~~g~~v~~~v~s-~~~a-~~a~~~Ga--D~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iP---viaaGGI~~ 172 (307)
T TIGR03151 100 KYIPRLKENGVKVIPVVAS-VALA-KRMEKAGA--DAVIAEGMESGGHIGELTTMALVPQVVDAVSIP---VIAAGGIAD 172 (307)
T ss_pred HHHHHHHHcCCEEEEEcCC-HHHH-HHHHHcCC--CEEEEECcccCCCCCCCcHHHHHHHHHHHhCCC---EEEECCCCC
Confidence 5888999988876543333 3333 34456675 44332 2221 1223456677777777654 777776321
Q ss_pred -hhHHHHHHcCCcEEEEcC
Q 023578 225 -DDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 225 -~Di~~a~~~G~~~i~v~~ 242 (280)
.|+..+...|...|++..
T Consensus 173 ~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 173 GRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred HHHHHHHHHcCCCEeecch
Confidence 578888889998888764
No 290
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=51.62 E-value=31 Score=24.43 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=34.3
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCccccee
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPAL 188 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~ 188 (280)
+.+.++..+++++|+.++.+|....+.++...+..++.|..+.
T Consensus 46 ~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~ 88 (124)
T PF00578_consen 46 PELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLS 88 (124)
T ss_dssp HHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEE
T ss_pred hHHHHHhhhhccceEEeeecccccccchhhhhhhhcccccccc
Confidence 4566677888888999999999888888888888887655443
No 291
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=51.49 E-value=27 Score=26.43 Aligned_cols=35 Identities=11% Similarity=-0.016 Sum_probs=25.8
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchH-HHHHHHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKE-AVDLFHNR 179 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~-~~~~~l~~ 179 (280)
.+.+.++++.+++.|+++.+.||+..+ ..+.+++.
T Consensus 74 ~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~ 109 (147)
T TIGR02826 74 REALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQH 109 (147)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHh
Confidence 356889999999999999999997543 23344444
No 292
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=50.68 E-value=1.5e+02 Score=24.89 Aligned_cols=32 Identities=9% Similarity=0.054 Sum_probs=15.6
Q ss_pred HHHHhhhCCCeEEEEeCCchHHHHHHHHHcCC
Q 023578 151 LCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI 182 (280)
Q Consensus 151 ~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~ 182 (280)
+-+.|+++|..+.++++.........++..|.
T Consensus 23 LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~ 54 (279)
T TIGR03590 23 LARALHAQGAEVAFACKPLPGDLIDLLLSAGF 54 (279)
T ss_pred HHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCC
Confidence 33444555555555555544443344444443
No 293
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.11 E-value=18 Score=22.98 Aligned_cols=25 Identities=12% Similarity=0.353 Sum_probs=21.4
Q ss_pred HHHHHHhcCCCCCcEEEEcCCchhhHHHHH
Q 023578 202 LLHICSTWEVQPNEVMMVGDSLKDDVACGK 231 (280)
Q Consensus 202 ~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~ 231 (280)
.++.++++|+ ++++||.. .|+++..
T Consensus 7 VqQlLK~~G~----ivyfg~r~-~~iemm~ 31 (68)
T COG4483 7 VQQLLKKFGI----IVYFGKRL-YDIEMMQ 31 (68)
T ss_pred HHHHHHHCCe----eeecCCHH-HHHHHHH
Confidence 4678899997 69999999 9999875
No 294
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=49.41 E-value=17 Score=29.95 Aligned_cols=28 Identities=18% Similarity=0.050 Sum_probs=24.9
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCchH
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIKE 171 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~~ 171 (280)
+.+++.++++.+++.|+++.+-||+...
T Consensus 85 l~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 85 LQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred hhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 3578999999999999999999999864
No 295
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=48.13 E-value=1e+02 Score=26.90 Aligned_cols=90 Identities=14% Similarity=0.086 Sum_probs=53.9
Q ss_pred HHHHHHHhhhC-CC-eEEEEeCCchHHHHHHHHHcCCcccc--eeeCCCCC--CCCChHH---HHHHHHhcCCCCCcEEE
Q 023578 148 TAQLCGFLDSK-KI-RRGLITRNIKEAVDLFHNRFGITFSP--ALSREFRP--YKPDPGP---LLHICSTWEVQPNEVMM 218 (280)
Q Consensus 148 ~~~~l~~L~~~-g~-~i~ivS~~~~~~~~~~l~~~g~~fd~--v~~~~~~~--~Kp~~~~---~~~~~~~lgi~~~~~v~ 218 (280)
+..+++.|+++ ++ ...++|+......+.+++.+++..+. .++. .+. .+--... +..++++. .|+=++.
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~--~pDiv~~ 92 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLNIMS-PGQTLGEITSNMLEGLEELLLEE--KPDIVLV 92 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeeecCC-CCCCHHHHHHHHHHHHHHHHHHc--CCCEEEE
Confidence 34577888875 44 35778888777888888888886332 2222 111 1111122 23333333 4777778
Q ss_pred EcCCchhhH---HHHHHcCCcEEEEc
Q 023578 219 VGDSLKDDV---ACGKRAGAFTCLLD 241 (280)
Q Consensus 219 iGDs~~~Di---~~a~~~G~~~i~v~ 241 (280)
.||.. .-+ .+|+..|++.+.+.
T Consensus 93 ~gd~~-~~la~a~aa~~~~ipv~h~~ 117 (365)
T TIGR00236 93 QGDTT-TTLAGALAAFYLQIPVGHVE 117 (365)
T ss_pred eCCch-HHHHHHHHHHHhCCCEEEEe
Confidence 88876 544 45666799998875
No 296
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=47.04 E-value=45 Score=26.06 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=24.6
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchH
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKE 171 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~ 171 (280)
.+.|++.++++.+++.|+.+.+.||+...
T Consensus 74 ll~~~l~~li~~~~~~g~~v~i~TNg~~~ 102 (191)
T TIGR02495 74 TLQAGLPDFLRKVRELGFEVKLDTNGSNP 102 (191)
T ss_pred cCcHhHHHHHHHHHHCCCeEEEEeCCCCH
Confidence 34577889999999999999999999743
No 297
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=46.99 E-value=3.4e+02 Score=27.99 Aligned_cols=67 Identities=10% Similarity=-0.059 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhcc
Q 023578 200 GPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANF 276 (280)
Q Consensus 200 ~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~ 276 (280)
..++..+++.|++......+.+.. .-.+.++..|.+++.=... +. ....-.++.+..||.+.+...+
T Consensus 129 ~~~k~~l~~~Gipvp~~~~v~s~~-e~~~~~~~igyPvIVKP~~-g~--------gg~Gv~iv~~~eeL~~~~~~~~ 195 (1050)
T TIGR01369 129 ELFREAMKEIGEPVPESEIAHSVE-EALAAAKEIGYPVIVRPAF-TL--------GGTGGGIAYNREELKEIAERAL 195 (1050)
T ss_pred HHHHHHHHHCCCCCCCeeecCCHH-HHHHHHHHhCCCeEEECCC-CC--------CCCCeEEECCHHHHHHHHHHHH
Confidence 466788899999877776666544 4456677889887653321 11 1244567889999888766544
No 298
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=46.85 E-value=94 Score=24.02 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=35.9
Q ss_pred HHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCccc-c-eeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCc
Q 023578 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFS-P-ALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSL 223 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd-~-v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~ 223 (280)
+.++++.+.+++.+++++-+.. +..+...+++.-.+. . +++...+...+ ..-..+++..+-...++++||=+.
T Consensus 35 ~~~ll~~~~~~~~~v~llG~~~-~~~~~~~~~l~~~yp~l~i~g~~~g~~~~--~~~~~i~~~I~~~~pdiv~vglG~ 109 (171)
T cd06533 35 MPALLELAAQKGLRVFLLGAKP-EVLEKAAERLRARYPGLKIVGYHHGYFGP--EEEEEIIERINASGADILFVGLGA 109 (171)
T ss_pred HHHHHHHHHHcCCeEEEECCCH-HHHHHHHHHHHHHCCCcEEEEecCCCCCh--hhHHHHHHHHHHcCCCEEEEECCC
Confidence 3457777777888888885443 445544433332211 1 22222222222 112225555555555666666543
No 299
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=46.60 E-value=72 Score=26.58 Aligned_cols=73 Identities=10% Similarity=0.115 Sum_probs=46.1
Q ss_pred HHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCccc--ceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCc
Q 023578 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFS--PALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSL 223 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd--~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~ 223 (280)
+.++++...+.|.+++++-+.. ..++...+++.-.+. .+++...+..+|..+ +.++++..-...++++||=+.
T Consensus 97 ~~~Ll~~a~~~~~~vfllGgkp-~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~--~~i~~~I~~s~pdil~VgmG~ 171 (253)
T COG1922 97 VEALLKRAAEEGKRVFLLGGKP-GVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEE--EAIVERIAASGPDILLVGMGV 171 (253)
T ss_pred HHHHHHHhCccCceEEEecCCH-HHHHHHHHHHHHHCCCceEEEecCCCCChhhH--HHHHHHHHhcCCCEEEEeCCC
Confidence 4566777777788888887654 445555555443333 244445666666555 577777766666788888765
No 300
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=46.57 E-value=1.2e+02 Score=25.45 Aligned_cols=38 Identities=5% Similarity=0.183 Sum_probs=26.3
Q ss_pred CCChHHHHHHHHhcCCC-------------------CCcEEEEcCCchhhHHHHHHc
Q 023578 196 KPDPGPLLHICSTWEVQ-------------------PNEVMMVGDSLKDDVACGKRA 233 (280)
Q Consensus 196 Kp~~~~~~~~~~~lgi~-------------------~~~~v~iGDs~~~Di~~a~~~ 233 (280)
+.....++..++++|++ -.+++++|.+.++|.+++...
T Consensus 91 ~gE~~~~~~~~~~lgi~i~~~~~~~~~eG~GD~l~~~~~~v~iG~s~RTn~egi~~l 147 (267)
T COG1834 91 RGEEEAIKETLESLGIPIYPRVEAGVFEGAGDVLMDGGDTVYIGYSFRTNLEGIEQL 147 (267)
T ss_pred ccCHHHHHHHHHHcCCcccccccCCCccccccEEEeCCcEEEEEeccccchHHHHHH
Confidence 33445666666666653 167889999998899888764
No 301
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=46.38 E-value=25 Score=25.23 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=24.2
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVD 174 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~ 174 (280)
.+++.+.++.++++|.+++.+|+.......
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~~s~la 88 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVVGSTLA 88 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCCChHH
Confidence 457888999999999999999997654433
No 302
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=45.88 E-value=1e+02 Score=25.58 Aligned_cols=71 Identities=7% Similarity=0.050 Sum_probs=40.4
Q ss_pred HHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccc-eeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCC
Q 023578 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSP-ALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (280)
Q Consensus 149 ~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~-v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs 222 (280)
.++++...++|++++++-+. ...++...+++.-.+.. +++...+... ++-.+.++++.+-...++++||=+
T Consensus 95 ~~ll~~~~~~~~~v~llG~~-~~v~~~a~~~l~~~y~l~i~g~~~Gyf~--~~e~~~i~~~I~~s~~dil~VglG 166 (243)
T PRK03692 95 EALMARAGKEGTPVFLVGGK-PEVLAQTEAKLRTQWNVNIVGSQDGYFT--PEQRQALFERIHASGAKIVTVAMG 166 (243)
T ss_pred HHHHHHHHhcCCeEEEECCC-HHHHHHHHHHHHHHhCCEEEEEeCCCCC--HHHHHHHHHHHHhcCCCEEEEECC
Confidence 45666677788999999544 44444444433222211 2222334333 334456777777777788888865
No 303
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=45.46 E-value=21 Score=25.69 Aligned_cols=30 Identities=17% Similarity=0.034 Sum_probs=24.8
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVD 174 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~ 174 (280)
.+.+.++++.+|++|.+++.+|+.....+.
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPNSTLA 89 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCCchh
Confidence 467889999999999999999997654443
No 304
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=45.28 E-value=82 Score=29.17 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=45.6
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---------ccceeeCCCCCCCCC----------hHHHHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---------FSPALSREFRPYKPD----------PGPLLHI 205 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---------fd~v~~~~~~~~Kp~----------~~~~~~~ 205 (280)
.+++.++.+.|.+.|+.++ .|.+. ...++..|+. |..+..+.++.-.|+ -.-=...
T Consensus 14 K~~iv~lAk~L~~lGfeI~-AT~GT----ak~L~e~GI~v~~V~k~TgfpEil~GRVKTLHP~IhgGiLa~r~~~~h~~~ 88 (513)
T PRK00881 14 KTGIVEFAKALVELGVEIL-STGGT----AKLLAEAGIPVTEVSDVTGFPEILDGRVKTLHPKIHGGILARRDNPEHVAA 88 (513)
T ss_pred cccHHHHHHHHHHCCCEEE-EcchH----HHHHHHCCCeeEEeecccCCchhcCCccccCCchhhhhhccCCCCHHHHHH
Confidence 6889999999999999985 66664 3456777875 344444444322232 1122345
Q ss_pred HHhcCCCCCcEEEEc
Q 023578 206 CSTWEVQPNEVMMVG 220 (280)
Q Consensus 206 ~~~lgi~~~~~v~iG 220 (280)
++++|+.+=+.|+|.
T Consensus 89 l~~~~i~~IDlVvvN 103 (513)
T PRK00881 89 LEEHGIEPIDLVVVN 103 (513)
T ss_pred HHHcCCCceeEEEEe
Confidence 777888877777664
No 305
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=44.85 E-value=75 Score=23.54 Aligned_cols=48 Identities=4% Similarity=0.075 Sum_probs=30.3
Q ss_pred CCCCChHHHHHHHHhcCCCCC-cEEEEcCCchhhH------HHHHHcCCcEEEEc
Q 023578 194 PYKPDPGPLLHICSTWEVQPN-EVMMVGDSLKDDV------ACGKRAGAFTCLLD 241 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~~lgi~~~-~~v~iGDs~~~Di------~~a~~~G~~~i~v~ 241 (280)
...|.++-++..++++|++++ .+|+.+++..... -+++.+|..-+.+-
T Consensus 75 ~~~p~~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~il 129 (138)
T cd01445 75 SMEPSEAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAIL 129 (138)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEe
Confidence 345667789999999999765 5777776410122 24455676655443
No 306
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=44.61 E-value=81 Score=27.39 Aligned_cols=79 Identities=9% Similarity=0.122 Sum_probs=51.9
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHH--------------------HHHHcCCcccceeeCCCCCCCCChHHHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDL--------------------FHNRFGITFSPALSREFRPYKPDPGPLLH 204 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~--------------------~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~ 204 (280)
.|=+..+.+.|+++|++++|+|-+.....+. +.++++ ...+ .++......+.
T Consensus 51 TP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~--~~V~------V~~dR~~~~~~ 122 (326)
T PF02606_consen 51 TPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP--VPVI------VGPDRVAAARA 122 (326)
T ss_pred hHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC--CcEE------EeCcHHHHHHH
Confidence 3567788999999999999999755432221 111111 1112 22334467788
Q ss_pred HHHhcCCCCCcEEEEcCCchhhHHHHHHcCC
Q 023578 205 ICSTWEVQPNEVMMVGDSLKDDVACGKRAGA 235 (280)
Q Consensus 205 ~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~ 235 (280)
++++++ .+++..+|+. .+....+...+
T Consensus 123 ~~~~~~---~dviilDDGf-Qh~~L~rDl~I 149 (326)
T PF02606_consen 123 ALKEFP---ADVIILDDGF-QHRRLKRDLDI 149 (326)
T ss_pred HHHHCC---CCEEEEcCCc-ccccccCCcEE
Confidence 888887 5699999999 88877766554
No 307
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=44.03 E-value=1.5e+02 Score=23.64 Aligned_cols=88 Identities=11% Similarity=0.126 Sum_probs=49.3
Q ss_pred HHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---ccceeeCCCCCCCCC---hHHHHHHHHhcCCCCCcEEEEc-
Q 023578 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPALSREFRPYKPD---PGPLLHICSTWEVQPNEVMMVG- 220 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---fd~v~~~~~~~~Kp~---~~~~~~~~~~lgi~~~~~v~iG- 220 (280)
..+.++.|++.|+++++=-=+.....-..+..+..+ +|.-+..+....... -..+..+++.+|+. +++=|
T Consensus 135 ~~~~i~~l~~~G~~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---via~gV 211 (241)
T smart00052 135 AVATLQRLRELGVRIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQ---VVAEGV 211 (241)
T ss_pred HHHHHHHHHHCCCEEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCe---EEEecC
Confidence 447899999999999875323323333455556544 333222121111112 22334556666653 44433
Q ss_pred CCchhhHHHHHHcCCcEEE
Q 023578 221 DSLKDDVACGKRAGAFTCL 239 (280)
Q Consensus 221 Ds~~~Di~~a~~~G~~~i~ 239 (280)
++. .+.+.+++.|+..+.
T Consensus 212 e~~-~~~~~l~~~Gi~~~Q 229 (241)
T smart00052 212 ETP-EQLDLLRSLGCDYGQ 229 (241)
T ss_pred CCH-HHHHHHHHcCCCEEe
Confidence 345 789999999997654
No 308
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=43.99 E-value=34 Score=18.69 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=23.8
Q ss_pred cEEEEeCCCcccCCCCCHHHHHHHHhCCch
Q 023578 69 RGVVFDMDGTLTVPVIDFPAMYRAVLGEDE 98 (280)
Q Consensus 69 k~iiFD~DGTL~d~~~~~~~~~~~~~g~~~ 98 (280)
++.++|++|..+.......++.+.+ |...
T Consensus 2 ~V~~yd~~~~~i~~F~Si~eAa~~l-~i~~ 30 (37)
T PF07453_consen 2 PVYVYDLNTNEIKSFDSIREAARYL-GISH 30 (37)
T ss_pred eEEEEECCCCeEEEEcCHHHHHHHh-CCCH
Confidence 6789999999998888888888877 6653
No 309
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=43.92 E-value=20 Score=29.24 Aligned_cols=10 Identities=50% Similarity=0.773 Sum_probs=7.4
Q ss_pred EEeCCCcccC
Q 023578 72 VFDMDGTLTV 81 (280)
Q Consensus 72 iFD~DGTL~d 81 (280)
+||+||||.+
T Consensus 1 ~lDyDGTL~p 10 (235)
T PF02358_consen 1 FLDYDGTLAP 10 (235)
T ss_dssp EEE-TTTSS-
T ss_pred CcccCCccCC
Confidence 6899999994
No 310
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=43.21 E-value=5.3 Score=23.20 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=19.5
Q ss_pred HHHHHhhhCCCeEEEEeCCchHHHHHHHHHc
Q 023578 150 QLCGFLDSKKIRRGLITRNIKEAVDLFHNRF 180 (280)
Q Consensus 150 ~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~ 180 (280)
|+.++|++.|+..+-+|+..+...+..+.++
T Consensus 10 ELr~~L~~~G~~~GPIt~tTR~vY~kkL~kl 40 (43)
T PF03020_consen 10 ELREELREYGEPPGPITPTTRKVYEKKLAKL 40 (43)
T ss_dssp CCHHCCCCCT-S-----CCCHHHHHHHCHHH
T ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Confidence 3567889999999999999988887776554
No 311
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=42.67 E-value=51 Score=27.38 Aligned_cols=64 Identities=9% Similarity=0.127 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCCCCcEEEEcCCc----hhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhc
Q 023578 200 GPLLHICSTWEVQPNEVMMVGDSL----KDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEAN 275 (280)
Q Consensus 200 ~~~~~~~~~lgi~~~~~v~iGDs~----~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~ 275 (280)
+.=..++++++++ +++-=||- ..=+++|+.+|+.++++.++.. .....++.+++|+.+++.++
T Consensus 180 e~n~aL~~~~~i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~----------~~~~~~~~~~~e~~~~l~~~ 246 (248)
T PRK08057 180 ELERALLRQHRID---VVVTKNSGGAGTEAKLEAARELGIPVVMIARPAL----------PYADREFEDVAELVAWLRHL 246 (248)
T ss_pred HHHHHHHHHcCCC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCC----------CCCCcccCCHHHHHHHHHHh
Confidence 4446778889875 44444433 1468999999999999986421 12224578999999998875
Q ss_pred c
Q 023578 276 F 276 (280)
Q Consensus 276 ~ 276 (280)
.
T Consensus 247 ~ 247 (248)
T PRK08057 247 L 247 (248)
T ss_pred h
Confidence 4
No 312
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=42.30 E-value=59 Score=28.45 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=29.5
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCc---hHHHHHHHHHcCCc
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNI---KEAVDLFHNRFGIT 183 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~---~~~~~~~l~~~g~~ 183 (280)
.+.|++.++++.+++.|+.+.+.||+. .+.++. +...|+.
T Consensus 65 ll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~-L~~~g~~ 107 (358)
T TIGR02109 65 LARPDLVELVAHARRLGLYTNLITSGVGLTEARLDA-LADAGLD 107 (358)
T ss_pred cccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHH-HHhCCCC
Confidence 457899999999999999999999985 233333 3345543
No 313
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=42.15 E-value=2.1e+02 Score=24.00 Aligned_cols=95 Identities=13% Similarity=0.075 Sum_probs=66.0
Q ss_pred CCcccCcCHHHHH---HHhhhCCCeEEEEeCCchHHHHHHHHHcCCccccee--eCC--CCCCCCChHHHHHHHHhcCCC
Q 023578 140 DRLQIMPGTAQLC---GFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPAL--SRE--FRPYKPDPGPLLHICSTWEVQ 212 (280)
Q Consensus 140 ~~~~~~pg~~~~l---~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~--~~~--~~~~Kp~~~~~~~~~~~lgi~ 212 (280)
+...+.|+..+.+ +.|-+.|+.|.-+++.+.. +-+.++..|-. .+. ++- .+.+-.++..++.+++...++
T Consensus 115 D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v-~a~rLed~Gc~--aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vp 191 (267)
T CHL00162 115 DPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPM-LAKHLEDIGCA--TVMPLGSPIGSGQGLQNLLNLQIIIENAKIP 191 (267)
T ss_pred CCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHH-HHHHHHHcCCe--EEeeccCcccCCCCCCCHHHHHHHHHcCCCc
Confidence 3445678776666 5566789999999988754 45566777854 221 111 234556778999999987654
Q ss_pred CCcEEEEcC---CchhhHHHHHHcCCcEEEEcC
Q 023578 213 PNEVMMVGD---SLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 213 ~~~~v~iGD---s~~~Di~~a~~~G~~~i~v~~ 242 (280)
+.+|- ++ +|+..|.+.|...++++.
T Consensus 192 ----VivdAGIgt~-sDa~~AmElGaDgVL~nS 219 (267)
T CHL00162 192 ----VIIDAGIGTP-SEASQAMELGASGVLLNT 219 (267)
T ss_pred ----EEEeCCcCCH-HHHHHHHHcCCCEEeecc
Confidence 45544 34 799999999999999984
No 314
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=41.63 E-value=23 Score=30.14 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=58.7
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHH-HHcCCcccceee-C-CCCCCCCChHHHHHHHHhcCCC------CCc
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFH-NRFGITFSPALS-R-EFRPYKPDPGPLLHICSTWEVQ------PNE 215 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l-~~~g~~fd~v~~-~-~~~~~Kp~~~~~~~~~~~lgi~------~~~ 215 (280)
..|-.+++..|++++ +-++.||...+.+-... +. +|.++. . +....+...+-|...++.-|.+ |=-
T Consensus 273 ttgp~~li~llrqr~-RpylFSnslppavV~~a~ka----~dllm~s~~~i~~~~a~~qrfr~~me~aGftIsg~~hPI~ 347 (417)
T KOG1359|consen 273 TTGPKPLISLLRQRS-RPYLFSNSLPPAVVGMAAKA----YDLLMVSSKEIQSRQANTQRFREFMEAAGFTISGASHPIC 347 (417)
T ss_pred ccCChhHHHHHHhcC-CceeecCCCChhhhhhhHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHhcCceecCCCCCcc
Confidence 445667888888885 66778886654433222 22 233222 1 1334445556677777777753 334
Q ss_pred EEEEcCCchhhHHHHHHc---CCcEEEEcCCC
Q 023578 216 VMMVGDSLKDDVACGKRA---GAFTCLLDETG 244 (280)
Q Consensus 216 ~v~iGDs~~~Di~~a~~~---G~~~i~v~~~~ 244 (280)
-+++||.. --..||... |+.++++..+.
T Consensus 348 pv~lGda~-lA~~~ad~lLk~Gi~Vigfs~Pv 378 (417)
T KOG1359|consen 348 PVMLGDAR-LASKMADELLKRGIYVIGFSYPV 378 (417)
T ss_pred ceecccHH-HHHHHHHHHHhcCceEEeecCCc
Confidence 68999998 888888765 89999887543
No 315
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=41.62 E-value=83 Score=27.58 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=37.5
Q ss_pred HHHHHHhhhCC--CeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhh
Q 023578 149 AQLCGFLDSKK--IRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDD 226 (280)
Q Consensus 149 ~~~l~~L~~~g--~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~D 226 (280)
....++|++.| ..++++|+.....++.-.+-. +-++.+++++ +|+.+++|-|+. .|
T Consensus 54 vkiydeL~~~GedveVA~VsG~~~~~v~ad~~I~-------------------~qld~vl~~~--~~~~~i~VsDGa-eD 111 (344)
T PF04123_consen 54 VKIYDELKAEGEDVEVAVVSGSPDVGVEADRKIA-------------------EQLDEVLSKF--DPDSAIVVSDGA-ED 111 (344)
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCCchhhHHHHH-------------------HHHHHHHHhC--CCCEEEEEecCh-hh
Confidence 34556777766 567888886654332221110 2345666666 467999999999 88
Q ss_pred HHHHH
Q 023578 227 VACGK 231 (280)
Q Consensus 227 i~~a~ 231 (280)
=...-
T Consensus 112 E~vlP 116 (344)
T PF04123_consen 112 ERVLP 116 (344)
T ss_pred hhhhH
Confidence 65543
No 316
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=41.33 E-value=55 Score=28.92 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=30.1
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCch---HHHHHHHHHcCCc
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIK---EAVDLFHNRFGIT 183 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~~---~~~~~~l~~~g~~ 183 (280)
..+.|++.++++.+++.|+.+.+.||+.. +.++ .+...|+.
T Consensus 73 Pll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~-~L~~~g~~ 116 (378)
T PRK05301 73 PLLRKDLEELVAHARELGLYTNLITSGVGLTEARLA-ALKDAGLD 116 (378)
T ss_pred cCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHH-HHHHcCCC
Confidence 34578899999999999999999999852 3333 34455553
No 317
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=40.90 E-value=2.3e+02 Score=24.12 Aligned_cols=91 Identities=13% Similarity=0.106 Sum_probs=51.5
Q ss_pred HHHHHHHhhhCCCeEEEEeCCchHHHHHHHHH---cCCcccceeeC-C--CCC--CCCChHHHHHHHHhcCCCCCcEEEE
Q 023578 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNR---FGITFSPALSR-E--FRP--YKPDPGPLLHICSTWEVQPNEVMMV 219 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~---~g~~fd~v~~~-~--~~~--~Kp~~~~~~~~~~~lgi~~~~~v~i 219 (280)
..++|+..+++||-+.-+.-.+.+.++.+++. .+.+ .++.. . ... .+.-..+...++++..++ =+++.
T Consensus 4 ~k~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sP--vIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VP--ValHL 79 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRSP--VILAGTPGTFKHAGTEYIVALCSAASTTYNMP--LALHL 79 (282)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCC--EEEEeCccHHhhCCHHHHHHHHHHHHHHCCCC--EEEEC
Confidence 46778888888888887777777777766643 3332 22221 1 111 011122444556666554 23444
Q ss_pred c--CCchhhHHHHHHcCCcEEEEcCC
Q 023578 220 G--DSLKDDVACGKRAGAFTCLLDET 243 (280)
Q Consensus 220 G--Ds~~~Di~~a~~~G~~~i~v~~~ 243 (280)
+ .+. .++..|-.+|+..|++..+
T Consensus 80 DHg~~~-e~i~~ai~~GFtSVM~DgS 104 (282)
T TIGR01858 80 DHHESL-DDIRQKVHAGVRSAMIDGS 104 (282)
T ss_pred CCCCCH-HHHHHHHHcCCCEEeecCC
Confidence 3 344 5677777778888888753
No 318
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=40.77 E-value=73 Score=25.90 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=20.5
Q ss_pred HHHHHHHhhhCCCeEEEEeCCchHHHHH
Q 023578 148 TAQLCGFLDSKKIRRGLITRNIKEAVDL 175 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~~~~~~~ 175 (280)
+.++|+.|+++ +.|++||++.-.-++.
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~e 27 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQE 27 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHH
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHH
Confidence 46789999987 9999999987654443
No 319
>PLN02423 phosphomannomutase
Probab=40.68 E-value=58 Score=26.83 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=27.5
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHH
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNR 179 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~ 179 (280)
.+.|...+.+++|+++ ++++++|++....+...+..
T Consensus 24 ~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~~~~~ 59 (245)
T PLN02423 24 EATPEMLEFMKELRKV-VTVGVVGGSDLSKISEQLGK 59 (245)
T ss_pred cCCHHHHHHHHHHHhC-CEEEEECCcCHHHHHHHhcc
Confidence 4567888999999987 99999999866555444433
No 320
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=40.67 E-value=1.5e+02 Score=23.22 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=35.4
Q ss_pred HHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccc--eeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCC
Q 023578 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSP--ALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (280)
Q Consensus 149 ~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~--v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs 222 (280)
.++++...++|.+++++-+.. ..++...+.+.-.+.. +++. .+...| +--+.++++.+-...++++||=+
T Consensus 38 ~~l~~~~~~~~~~vfllG~~~-~v~~~~~~~l~~~yP~l~i~g~-~g~f~~--~~~~~i~~~I~~s~~dil~VglG 109 (177)
T TIGR00696 38 EELCQRAGKEKLPIFLYGGKP-DVLQQLKVKLIKEYPKLKIVGA-FGPLEP--EERKAALAKIARSGAGIVFVGLG 109 (177)
T ss_pred HHHHHHHHHcCCeEEEECCCH-HHHHHHHHHHHHHCCCCEEEEE-CCCCCh--HHHHHHHHHHHHcCCCEEEEEcC
Confidence 456677777788888885443 4444444444322211 1222 332222 23344555555555566666644
No 321
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=40.61 E-value=31 Score=28.61 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=35.3
Q ss_pred CCChH----HHHHHHHhcCCCCC--cEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 196 KPDPG----PLLHICSTWEVQPN--EVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 196 Kp~~~----~~~~~~~~lgi~~~--~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
||.|. .|..-++.+|++|. ++-||.|+.++--..|.-.|+- ||++
T Consensus 85 KPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWE-VWld 135 (283)
T PRK09348 85 KPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWE-VWLD 135 (283)
T ss_pred cCCCccHHHHHHHHHHHhCCCccccceeEeecCCCCCcccccccceE-EEEC
Confidence 66665 56677899999875 6999999998888899989875 4444
No 322
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=40.52 E-value=2.2e+02 Score=23.96 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=64.2
Q ss_pred HHHHHhhhCCCeEEEEeC----CchHHHHHHHHHcCCcccc--eeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCc
Q 023578 150 QLCGFLDSKKIRRGLITR----NIKEAVDLFHNRFGITFSP--ALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSL 223 (280)
Q Consensus 150 ~~l~~L~~~g~~i~ivS~----~~~~~~~~~l~~~g~~fd~--v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~ 223 (280)
+.++.++..++.+++... +....+...++.+|+.+-+ ..+..... +......+++++|++-...+.+.+..
T Consensus 47 ~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~gi~~~g~~~~~~~~~~---dK~~~k~~l~~~gIp~p~~~~~~~~~ 123 (304)
T PRK01372 47 DIAAQLKELGFDRVFNALHGRGGEDGTIQGLLELLGIPYTGSGVLASALAM---DKLRTKLVWQAAGLPTPPWIVLTREE 123 (304)
T ss_pred chHHHhccCCCCEEEEecCCCCCCccHHHHHHHHcCCCccCCCHHHHHHHh---CHHHHHHHHHHCCCCCCCEEEEeCcc
Confidence 445555566677666541 2233456677777775211 11111111 22467788999999877777666655
Q ss_pred hhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhc
Q 023578 224 KDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEAN 275 (280)
Q Consensus 224 ~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~ 275 (280)
.-...+...|.+.+.=...+.. ...-..+.+..|+.+.++..
T Consensus 124 -~~~~~~~~~~~P~ivKP~~g~~---------s~Gv~~v~~~~el~~~~~~~ 165 (304)
T PRK01372 124 -DLLAAIDKLGLPLVVKPAREGS---------SVGVSKVKEEDELQAALELA 165 (304)
T ss_pred -hHHHHHhhcCCCEEEeeCCCCC---------CCCEEEeCCHHHHHHHHHHH
Confidence 3355567778876543322221 12335688888888877654
No 323
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=40.51 E-value=34 Score=24.61 Aligned_cols=29 Identities=14% Similarity=0.032 Sum_probs=24.0
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAV 173 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~ 173 (280)
.+++.+.++.++++|.+++.+|+......
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDEDSPL 88 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCCCCcH
Confidence 46788899999999999999998765443
No 324
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=40.38 E-value=1.4e+02 Score=25.32 Aligned_cols=93 Identities=12% Similarity=0.053 Sum_probs=58.6
Q ss_pred CHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc-ccceeeCCCC-----C-CCCChHHHHHHHHhcCCCCCcEEEE
Q 023578 147 GTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FSPALSREFR-----P-YKPDPGPLLHICSTWEVQPNEVMMV 219 (280)
Q Consensus 147 g~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-fd~v~~~~~~-----~-~Kp~~~~~~~~~~~lgi~~~~~v~i 219 (280)
...++|+..+++||-+.-+-=.+.++++.+++...-. =..++....+ . ..--..+...++++++++ =+++.
T Consensus 5 ~~~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vP--V~lHl 82 (286)
T COG0191 5 SMKELLDKAKENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVP--VALHL 82 (286)
T ss_pred cHHHHHHHHHHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCC--EEEEC
Confidence 3478889999998887776655667777777544322 1223332211 1 122234567778888865 34444
Q ss_pred --cCCchhhHHHHHHcCCcEEEEcC
Q 023578 220 --GDSLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 220 --GDs~~~Di~~a~~~G~~~i~v~~ 242 (280)
|++. .++..|.++|++.+++..
T Consensus 83 DHg~~~-~~~~~ai~~GFsSvMiDg 106 (286)
T COG0191 83 DHGASF-EDCKQAIRAGFSSVMIDG 106 (286)
T ss_pred CCCCCH-HHHHHHHhcCCceEEecC
Confidence 4466 888888899999999874
No 325
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=39.88 E-value=14 Score=32.72 Aligned_cols=16 Identities=44% Similarity=0.405 Sum_probs=14.2
Q ss_pred CCccEEEEeCCCcccC
Q 023578 66 TRLRGVVFDMDGTLTV 81 (280)
Q Consensus 66 ~~~k~iiFD~DGTL~d 81 (280)
..+.++.||||+||..
T Consensus 25 ~~i~~~GfdmDyTL~~ 40 (424)
T KOG2469|consen 25 ENIGIVGFDMDYTLAR 40 (424)
T ss_pred hcCcEEeeccccchhh
Confidence 4689999999999994
No 326
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=39.83 E-value=32 Score=28.44 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=35.3
Q ss_pred CCChH----HHHHHHHhcCCCCC--cEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 196 KPDPG----PLLHICSTWEVQPN--EVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 196 Kp~~~----~~~~~~~~lgi~~~--~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
||.|. .|..-++.+|++|. ++-||.|+.++--..|.-.|+- ||++
T Consensus 81 KPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWE-VWld 131 (279)
T cd00733 81 KPSPDNIQELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWE-VWLD 131 (279)
T ss_pred CCCCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccE-EEEC
Confidence 66665 56677899999875 6999999998888899999975 4444
No 327
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=39.81 E-value=2e+02 Score=23.09 Aligned_cols=119 Identities=13% Similarity=0.060 Sum_probs=64.1
Q ss_pred HHHHHHHhhhCCCeEEEEeCCchH-HHHHHHHH-cCCcccceeeCCCCCCCCChHHHHHHHHhcCCC-C-CcEEEEcCCc
Q 023578 148 TAQLCGFLDSKKIRRGLITRNIKE-AVDLFHNR-FGITFSPALSREFRPYKPDPGPLLHICSTWEVQ-P-NEVMMVGDSL 223 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~~~-~~~~~l~~-~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~-~-~~~v~iGDs~ 223 (280)
+..+++.|++. +++++++|--.. .=...+.+ .|...-.+-++... .-++.+...+++++... + -+.++|...-
T Consensus 30 ie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~C--H~da~m~~~ai~~l~~~~~~~Dll~iEs~G 106 (202)
T COG0378 30 IEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGC--HLDASMNLEAIEELVLDFPDLDLLFIESVG 106 (202)
T ss_pred HHHHHHHHHhh-CCeEEEeceeechhhHHHHHhCCCCeeEEeccCCcc--CCcHHHHHHHHHHHhhcCCcCCEEEEecCc
Confidence 34567888888 999999994332 22334445 66543344444211 25567888888888653 2 4899998766
Q ss_pred hhhHHHHHH-c-C-CcEEEEcCCCCCCccccccC----CCCCCEEEcCHHHHHHHHH
Q 023578 224 KDDVACGKR-A-G-AFTCLLDETGRYSADDFTKS----NLQPDFRVSSLTEVLSILE 273 (280)
Q Consensus 224 ~~Di~~a~~-~-G-~~~i~v~~~~~~~~~~~~~~----~~~~d~v~~~~~dl~~~l~ 273 (280)
|=+..+.- . . +..+.++-. -|. +.++. -..+|+++-+=.||.+.+.
T Consensus 107 -NL~~~~sp~L~d~~~v~Vidvt--eGe-~~P~K~gP~i~~aDllVInK~DLa~~v~ 159 (202)
T COG0378 107 -NLVCPFSPDLGDHLRVVVIDVT--EGE-DIPRKGGPGIFKADLLVINKTDLAPYVG 159 (202)
T ss_pred -ceecccCcchhhceEEEEEECC--CCC-CCcccCCCceeEeeEEEEehHHhHHHhC
Confidence 32221111 1 1 233333321 111 22221 1237777777777776653
No 328
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=39.50 E-value=1.4e+02 Score=24.84 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=16.7
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeC
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITR 167 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~ 167 (280)
.+--.+++.++++++++++...+
T Consensus 132 v~~Kv~Li~~c~~~ki~vIss~G 154 (263)
T COG1179 132 VRAKVALIAYCRRNKIPVISSMG 154 (263)
T ss_pred hHHHHHHHHHHHHcCCCEEeecc
Confidence 34456789999999987766654
No 329
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=39.23 E-value=64 Score=23.03 Aligned_cols=36 Identities=11% Similarity=0.008 Sum_probs=26.0
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCC
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI 182 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~ 182 (280)
.+++.+.++.++++|.+++.+|+.. + .....++.|.
T Consensus 56 t~e~i~~~~~a~~~g~~iI~IT~~~-~-l~~~~~~~~~ 91 (119)
T cd05017 56 TEETLSAVEQAKERGAKIVAITSGG-K-LLEMAREHGV 91 (119)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCc-h-HHHHHHHcCC
Confidence 4678889999999999999999754 3 3444444443
No 330
>PLN02334 ribulose-phosphate 3-epimerase
Probab=39.00 E-value=2.1e+02 Score=23.20 Aligned_cols=94 Identities=12% Similarity=0.014 Sum_probs=53.5
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCC--chHHHHHHHHHcCCc---ccceeeCCCCCCCCChHHHHHHHHhcCC-CCCcEEEE
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRN--IKEAVDLFHNRFGIT---FSPALSREFRPYKPDPGPLLHICSTWEV-QPNEVMMV 219 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~--~~~~~~~~l~~~g~~---fd~v~~~~~~~~Kp~~~~~~~~~~~lgi-~~~~~v~i 219 (280)
+...+.++.+++.|..+++..+. ..+..+..++.-|.+ +=.+..+..+ .+..+..+..+.+-... ....++++
T Consensus 102 d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~-~~~~~~~~~~i~~~~~~~~~~~I~a~ 180 (229)
T PLN02334 102 IHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGG-QSFIPSMMDKVRALRKKYPELDIEVD 180 (229)
T ss_pred hhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCc-cccCHHHHHHHHHHHHhCCCCcEEEe
Confidence 34567889999999999999973 344444444331243 1122222222 12234444443332221 12246666
Q ss_pred c-CCchhhHHHHHHcCCcEEEEc
Q 023578 220 G-DSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 220 G-Ds~~~Di~~a~~~G~~~i~v~ 241 (280)
| =+. .++....++|...+.+.
T Consensus 181 GGI~~-e~i~~l~~aGad~vvvg 202 (229)
T PLN02334 181 GGVGP-STIDKAAEAGANVIVAG 202 (229)
T ss_pred CCCCH-HHHHHHHHcCCCEEEEC
Confidence 4 566 89999999999888765
No 331
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=38.35 E-value=17 Score=24.27 Aligned_cols=16 Identities=25% Similarity=0.190 Sum_probs=13.5
Q ss_pred cEEEEeCCCcccCCCC
Q 023578 69 RGVVFDMDGTLTVPVI 84 (280)
Q Consensus 69 k~iiFD~DGTL~d~~~ 84 (280)
-.++++-|||.+|++.
T Consensus 40 ~~lvLeeDGT~Vd~Ee 55 (81)
T cd06537 40 LTLVLEEDGTAVDSED 55 (81)
T ss_pred eEEEEecCCCEEccHH
Confidence 5699999999998754
No 332
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=38.29 E-value=30 Score=22.31 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCCCCcEEEEcCC
Q 023578 201 PLLHICSTWEVQPNEVMMVGDS 222 (280)
Q Consensus 201 ~~~~~~~~lgi~~~~~v~iGDs 222 (280)
++...+++.|+.+.++|.|||-
T Consensus 44 Gv~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 44 GVEKALRKAGAKEGDTVRIGDY 65 (69)
T ss_dssp THHHHHHTTT--TT-EEEETTE
T ss_pred CHHHHHHHcCCCCCCEEEEcCE
Confidence 4457788889999999999984
No 333
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=38.15 E-value=1.5e+02 Score=22.83 Aligned_cols=73 Identities=11% Similarity=0.072 Sum_probs=39.5
Q ss_pred HHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcc-cc-eeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCc
Q 023578 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITF-SP-ALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSL 223 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~f-d~-v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~ 223 (280)
+.++++.+.++|.+++++-+.. ...+...+.+.-.+ .. +++...+.. ++.-.+.+++..+-...++++||=+.
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~-~~~~~~~~~l~~~yP~l~ivg~~~g~f--~~~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSE-EVLEKAAANLRRRYPGLRIVGYHHGYF--DEEEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCH-HHHHHHHHHHHHHCCCeEEEEecCCCC--ChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 4556777777888888887664 44444444433222 11 222222221 34455566666655555677777665
No 334
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=38.09 E-value=2.4e+02 Score=25.18 Aligned_cols=18 Identities=6% Similarity=-0.025 Sum_probs=9.2
Q ss_pred HHHHHhhhCCCeEEEEeC
Q 023578 150 QLCGFLDSKKIRRGLITR 167 (280)
Q Consensus 150 ~~l~~L~~~g~~i~ivS~ 167 (280)
.+++.|++.|..+=++|.
T Consensus 50 ~il~~l~~~G~g~DvaS~ 67 (394)
T cd06831 50 AVLEILAALGTGFACSSK 67 (394)
T ss_pred HHHHHHHHcCCCeEeCCH
Confidence 345555555555444443
No 335
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=38.03 E-value=1.2e+02 Score=24.97 Aligned_cols=21 Identities=19% Similarity=0.012 Sum_probs=9.9
Q ss_pred cCcCHHHHHHHhhhCCCeEEE
Q 023578 144 IMPGTAQLCGFLDSKKIRRGL 164 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~i 164 (280)
+.++..++.+.|++.|+.+..
T Consensus 11 p~~~~~~l~~~l~~~G~~~~~ 31 (255)
T PRK05752 11 PAEECAALAASLAEAGIFSSS 31 (255)
T ss_pred cHHHHHHHHHHHHHcCCCEEE
Confidence 334444455555555544433
No 336
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=37.90 E-value=57 Score=22.85 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=23.1
Q ss_pred ChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHH
Q 023578 198 DPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKR 232 (280)
Q Consensus 198 ~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~ 232 (280)
|-..++++++.+ +..+.|.||||-+.|.+.-..
T Consensus 51 K~~~i~~i~~~f--P~~kfiLIGDsgq~DpeiY~~ 83 (100)
T PF09949_consen 51 KRDNIERILRDF--PERKFILIGDSGQHDPEIYAE 83 (100)
T ss_pred HHHHHHHHHHHC--CCCcEEEEeeCCCcCHHHHHH
Confidence 345666666666 345899999999888776544
No 337
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=37.59 E-value=21 Score=32.49 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=11.4
Q ss_pred CCccEEEEeCCCcccC
Q 023578 66 TRLRGVVFDMDGTLTV 81 (280)
Q Consensus 66 ~~~k~iiFD~DGTL~d 81 (280)
..+++|-||||-||+.
T Consensus 10 ~~i~~iGFDmDyTLa~ 25 (448)
T PF05761_consen 10 KDIDVIGFDMDYTLAR 25 (448)
T ss_dssp CC--EEEE-TBTTTBE
T ss_pred ccCCEEEECcccchhh
Confidence 4699999999999994
No 338
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=37.55 E-value=18 Score=24.00 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=13.8
Q ss_pred ccEEEEeCCCcccCCCC
Q 023578 68 LRGVVFDMDGTLTVPVI 84 (280)
Q Consensus 68 ~k~iiFD~DGTL~d~~~ 84 (280)
.-.++++-|||.+|++.
T Consensus 40 ~~~lvL~eDGT~Vd~Ee 56 (78)
T cd06539 40 LVTLVLEEDGTVVDTEE 56 (78)
T ss_pred CcEEEEeCCCCEEccHH
Confidence 35699999999997754
No 339
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=37.38 E-value=1.3e+02 Score=26.04 Aligned_cols=46 Identities=15% Similarity=0.106 Sum_probs=32.3
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCC---------------------chHHHHHHHHHcCCc--ccceeeCC
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRN---------------------IKEAVDLFHNRFGIT--FSPALSRE 191 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~---------------------~~~~~~~~l~~~g~~--fd~v~~~~ 191 (280)
.--.++|+.+..+|+++..-|+. ....+++.+++.|+. +..+++.|
T Consensus 177 dtKVdLL~y~~~~~l~Viss~GaaaksDPTrv~v~Dis~t~~DPlsR~vRrrLrk~GI~~GIpVVFS~E 245 (430)
T KOG2018|consen 177 DTKVDLLEYCYNHGLKVISSTGAAAKSDPTRVNVADISETEEDPLSRSVRRRLRKRGIEGGIPVVFSLE 245 (430)
T ss_pred hhhhHHHHHHHHcCCceEeccCccccCCCceeehhhccccccCcHHHHHHHHHHHhccccCCceEEecC
Confidence 33467899999999998877762 123467788888887 66666654
No 340
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=37.33 E-value=37 Score=28.25 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=35.2
Q ss_pred CCChH----HHHHHHHhcCCCCC--cEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 196 KPDPG----PLLHICSTWEVQPN--EVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 196 Kp~~~----~~~~~~~~lgi~~~--~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
||.|. .|..-++.+|++|. ++-||.|+.++--..|.-.|+- ||++
T Consensus 82 KPsP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWE-VWld 132 (293)
T TIGR00388 82 KPSPDNIQELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWE-VWLD 132 (293)
T ss_pred CCCCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccE-EEEC
Confidence 66665 56667888999875 6999999998888899999975 4444
No 341
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=36.68 E-value=40 Score=28.61 Aligned_cols=75 Identities=7% Similarity=-0.098 Sum_probs=44.5
Q ss_pred CHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCC-c--c-------cceeeCC-C-------CCCCC-ChHHHHHHHH
Q 023578 147 GTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGI-T--F-------SPALSRE-F-------RPYKP-DPGPLLHICS 207 (280)
Q Consensus 147 g~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~-~--f-------d~v~~~~-~-------~~~Kp-~~~~~~~~~~ 207 (280)
.+.+-+..|++.|.++++||++....-...+...+. . + ..+.... . ..+++ -...|+..+.
T Consensus 35 ~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~ 114 (284)
T cd04256 35 SIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQLKDMPQMELDGRACAAVGQSGLMALYEAMFT 114 (284)
T ss_pred HHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhcccccccCCcchhHHHHHHHHcccHHHHHHHHHHHH
Confidence 355567788899999999998877766666644331 0 1 0000000 0 01111 1346778888
Q ss_pred hcCCCCCcEEEEcC
Q 023578 208 TWEVQPNEVMMVGD 221 (280)
Q Consensus 208 ~lgi~~~~~v~iGD 221 (280)
++|+.+.+++.-.+
T Consensus 115 ~~~~~~~q~llt~~ 128 (284)
T cd04256 115 QYGITVAQVLVTKP 128 (284)
T ss_pred HcCCcHHHeeeecc
Confidence 88999999865555
No 342
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=36.59 E-value=3.1e+02 Score=24.49 Aligned_cols=118 Identities=12% Similarity=0.072 Sum_probs=66.5
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCCch--HHHHHHHHHcCCcccceeeCC--CCCCCCChHHHHHHHHhcCCCCCcEEEEcC
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRNIK--EAVDLFHNRFGITFSPALSRE--FRPYKPDPGPLLHICSTWEVQPNEVMMVGD 221 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~~~--~~~~~~l~~~g~~fd~v~~~~--~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGD 221 (280)
.+...+++.+++.++..++...... ......++.+|+. +++.. ....--+....+..++++|++......+.+
T Consensus 51 ~d~~~l~~~~~~~~id~vi~~~e~~l~~~~~~~l~~~gi~---~~g~~~~~~~~~~dK~~~k~~l~~~gIp~p~~~~~~~ 127 (423)
T TIGR00877 51 TDIEALVEFAKKKKIDLAVIGPEAPLVLGLVDALEEAGIP---VFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTD 127 (423)
T ss_pred CCHHHHHHHHHHhCCCEEEECCchHHHHHHHHHHHHCCCe---EECCCHHHHHHHCCHHHHHHHHHHCCCCCCCeEEECC
Confidence 4566677778888777666543321 1123455666654 11111 000011335677889999998777777765
Q ss_pred CchhhHHHHHHcCCc-EEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhcc
Q 023578 222 SLKDDVACGKRAGAF-TCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANF 276 (280)
Q Consensus 222 s~~~Di~~a~~~G~~-~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~ 276 (280)
.. .-.+.+...|.+ ++.=... ..+ ...-.++.+..|+.+.+.+++
T Consensus 128 ~~-~~~~~~~~~g~P~~VvKp~~-~~g--------g~Gv~~v~~~~el~~~~~~~~ 173 (423)
T TIGR00877 128 PE-EALSYIQEKGAPAIVVKADG-LAA--------GKGVIVAKTNEEAIKAVEEIL 173 (423)
T ss_pred HH-HHHHHHHhcCCCeEEEEECC-CCC--------CCCEEEECCHHHHHHHHHHHH
Confidence 44 334556677877 5442221 111 234467889999888776653
No 343
>PLN02382 probable sucrose-phosphatase
Probab=36.24 E-value=82 Score=28.36 Aligned_cols=41 Identities=5% Similarity=-0.187 Sum_probs=32.1
Q ss_pred HHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc-ccceee
Q 023578 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FSPALS 189 (280)
Q Consensus 149 ~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-fd~v~~ 189 (280)
.++++.++++|+.++++|+.....+..+.+.+++. .+.+++
T Consensus 35 ~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~~p~~~I~ 76 (413)
T PLN02382 35 NALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLLTPDITIM 76 (413)
T ss_pred HHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCCCCCEEEE
Confidence 34557888999999999999988888888888876 443443
No 344
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=36.20 E-value=1.4e+02 Score=23.15 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=39.4
Q ss_pred HHhcCCCCCcEEEEcCCchhhH-HHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhc
Q 023578 206 CSTWEVQPNEVMMVGDSLKDDV-ACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEAN 275 (280)
Q Consensus 206 ~~~lgi~~~~~v~iGDs~~~Di-~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~ 275 (280)
++++|++...-..+.+.. |+ .++...|.+++.=...+++. .+..+++.+-.|+...++.+
T Consensus 1 l~~~gip~~~~~~i~~~~--~l~~a~~~iG~P~vlK~~~~GYD--------GkGq~~i~~~~dl~~a~~~~ 61 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLE--DLEEAAESIGFPAVLKTRRGGYD--------GKGQFVIRSEEDLEKAWQEL 61 (172)
T ss_dssp HHHTT--B-EEEEESSHH--HHHHHHHHHTSSEEEEESSSSCT--------TTTEEEESSGGGHHHHHHHT
T ss_pred CcccCCCCCCeEEECCHH--HHHHHHHHcCCCEEEEccCcCcC--------CCccEEECCHHHHHHHHHhc
Confidence 467888777666665544 65 44567799998875544432 35567899999999888766
No 345
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=35.90 E-value=1.2e+02 Score=25.12 Aligned_cols=79 Identities=9% Similarity=0.079 Sum_probs=50.2
Q ss_pred CCCeEEEEeCCchHHHH-------HHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchh--hHH
Q 023578 158 KKIRRGLITRNIKEAVD-------LFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKD--DVA 228 (280)
Q Consensus 158 ~g~~i~ivS~~~~~~~~-------~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~--Di~ 228 (280)
.++.+.+++++..-.-+ ..++.++ .|.++-...+...|-|..-+.++...|++ |+.|||.+ . +-.
T Consensus 29 edI~vrv~gsGaKm~pe~~e~~~~~~~~~~~--pdf~I~isPN~~~PGP~~ARE~l~~~~iP---~IvI~D~p-~~k~kd 102 (276)
T PF01993_consen 29 EDIDVRVVGSGAKMGPEDVEEVVTKMLKEWD--PDFVIVISPNAAAPGPTKAREMLSAKGIP---CIVISDAP-TKKAKD 102 (276)
T ss_dssp SSEEEEEEEEET--SHHHHHHHHHHHHHHH----SEEEEE-S-TTSHHHHHHHHHHHHSSS----EEEEEEGG-GGGGHH
T ss_pred CCceEEEeccCCCCCHHHHHHHHHHHHHhhC--CCEEEEECCCCCCCCcHHHHHHHHhCCCC---EEEEcCCC-chhhHH
Confidence 37888888876533222 2233444 45544444455578888888999888987 99999987 3 566
Q ss_pred HHHHcCCcEEEEcC
Q 023578 229 CGKRAGAFTCLLDE 242 (280)
Q Consensus 229 ~a~~~G~~~i~v~~ 242 (280)
..++.|+..|.+..
T Consensus 103 ~l~~~g~GYIivk~ 116 (276)
T PF01993_consen 103 ALEEEGFGYIIVKA 116 (276)
T ss_dssp HHHHTT-EEEEETT
T ss_pred HHHhcCCcEEEEec
Confidence 78888999888863
No 346
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=35.89 E-value=21 Score=23.50 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=13.6
Q ss_pred ccEEEEeCCCcccCCCC
Q 023578 68 LRGVVFDMDGTLTVPVI 84 (280)
Q Consensus 68 ~k~iiFD~DGTL~d~~~ 84 (280)
.-.++++-|||.+|++.
T Consensus 38 ~~~l~L~eDGT~VddEe 54 (74)
T smart00266 38 PVTLVLEEDGTIVDDEE 54 (74)
T ss_pred CcEEEEecCCcEEccHH
Confidence 35699999999997654
No 347
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=35.88 E-value=78 Score=26.92 Aligned_cols=51 Identities=12% Similarity=0.204 Sum_probs=37.4
Q ss_pred CCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHH------cCCcEEEEcCCC
Q 023578 193 RPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKR------AGAFTCLLDETG 244 (280)
Q Consensus 193 ~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~------~G~~~i~v~~~~ 244 (280)
...-|.++.|..++.++||..+++|++=|.. +...+++. +|..-|.+-++|
T Consensus 69 ~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd~-~~~~A~ra~W~l~~~Gh~~V~iLdGG 125 (285)
T COG2897 69 PHMLPSPEQFAKLLGELGIRNDDTVVVYDDG-GGFFAARAWWLLRYLGHENVRILDGG 125 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCEEEEECCC-CCeehHHHHHHHHHcCCCceEEecCC
Confidence 4567889999999999999877766555555 56666554 588777776643
No 348
>PLN02891 IMP cyclohydrolase
Probab=35.79 E-value=1.3e+02 Score=27.92 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=43.9
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---------ccceeeCCCCCCCCCh----------HHHHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---------FSPALSREFRPYKPDP----------GPLLHI 205 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---------fd~v~~~~~~~~Kp~~----------~~~~~~ 205 (280)
..|+.++.+.|.+.|+.++- |++. ...++..|+. |..+..+.++.-.|+- ..=..-
T Consensus 32 Ktgi~~fAk~L~~~gveIiS-TgGT----ak~L~e~Gi~v~~Vsd~TgfPEiL~GRVKTLHPkIhgGILa~r~~~~h~~~ 106 (547)
T PLN02891 32 KTDLALLANGLQELGYTIVS-TGGT----ASALEAAGVSVTKVEELTNFPEMLDGRVKTLHPAVHGGILARRDQEHHMEA 106 (547)
T ss_pred ccCHHHHHHHHHHCCCEEEE-cchH----HHHHHHcCCceeeHHhccCCchhhCCcccccCchhhhhhhcCCCCHHHHHH
Confidence 47899999999999987643 4443 3456777876 4455555554333321 112234
Q ss_pred HHhcCCCCCcEEEEc
Q 023578 206 CSTWEVQPNEVMMVG 220 (280)
Q Consensus 206 ~~~lgi~~~~~v~iG 220 (280)
++++|+.+=+.|+|.
T Consensus 107 l~~~~I~~IDlVvVN 121 (547)
T PLN02891 107 LNEHGIGTIDVVVVN 121 (547)
T ss_pred HHHcCCCceeeEEEe
Confidence 667777776766654
No 349
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=35.78 E-value=49 Score=23.71 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=23.6
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVD 174 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~ 174 (280)
..+..+.++.++++|.+++.+|+.....+.
T Consensus 66 ~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~ 95 (131)
T PF01380_consen 66 TRELIELLRFAKERGAPVILITSNSESPLA 95 (131)
T ss_dssp THHHHHHHHHHHHTTSEEEEEESSTTSHHH
T ss_pred chhhhhhhHHHHhcCCeEEEEeCCCCCchh
Confidence 456788899999999999999986554433
No 350
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=35.68 E-value=2.5e+02 Score=23.16 Aligned_cols=95 Identities=17% Similarity=0.098 Sum_probs=65.8
Q ss_pred CCcccCcCHHHHH---HHhhhCCCeEEEEeCCchHHHHHHHHHcCCc----ccceeeCCCCCCCCChHHHHHHHHhcCCC
Q 023578 140 DRLQIMPGTAQLC---GFLDSKKIRRGLITRNIKEAVDLFHNRFGIT----FSPALSREFRPYKPDPGPLLHICSTWEVQ 212 (280)
Q Consensus 140 ~~~~~~pg~~~~l---~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~----fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~ 212 (280)
+.-.+.|+..+.+ +.|-+.|+.+--.++.+.-. -+.++..|-. .-.=+++ +.+--.+..++.+.++..++
T Consensus 108 d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~-arrLee~GcaavMPl~aPIGS--g~G~~n~~~l~iiie~a~VP 184 (262)
T COG2022 108 DEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVL-ARRLEEAGCAAVMPLGAPIGS--GLGLQNPYNLEIIIEEADVP 184 (262)
T ss_pred CCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHH-HHHHHhcCceEeccccccccC--CcCcCCHHHHHHHHHhCCCC
Confidence 3446778877766 45667899999999877554 4455666754 1111222 23445678999999999776
Q ss_pred CCcEEEEcC---CchhhHHHHHHcCCcEEEEcC
Q 023578 213 PNEVMMVGD---SLKDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 213 ~~~~v~iGD---s~~~Di~~a~~~G~~~i~v~~ 242 (280)
+.|+- ++ +|...|.+.|+..|++|.
T Consensus 185 ----viVDAGiG~p-SdAa~aMElG~DaVL~NT 212 (262)
T COG2022 185 ----VIVDAGIGTP-SDAAQAMELGADAVLLNT 212 (262)
T ss_pred ----EEEeCCCCCh-hHHHHHHhcccceeehhh
Confidence 44443 45 799999999999999884
No 351
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=35.46 E-value=80 Score=24.78 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=27.7
Q ss_pred HHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCccc
Q 023578 150 QLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFS 185 (280)
Q Consensus 150 ~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd 185 (280)
.+...|...|++++++|.... ++..+.++|+.+.
T Consensus 107 ~l~~~L~~~g~~w~vfTaT~~--lr~~~~rlgl~~~ 140 (179)
T PF12261_consen 107 ALAQLLAQQGFEWVVFTATRQ--LRNLFRRLGLPPT 140 (179)
T ss_pred HHHHHHHHCCCCEEEEeCCHH--HHHHHHHcCCCce
Confidence 355778889999999998754 7889999999733
No 352
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=35.04 E-value=1.1e+02 Score=22.23 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=29.0
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCccc
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFS 185 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd 185 (280)
+.+.++.+.+++.|+.++.+|......+....+..++.|.
T Consensus 44 ~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~ 83 (140)
T cd03017 44 CDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFP 83 (140)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCce
Confidence 4445566777778888888887777777777777777654
No 353
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=34.67 E-value=44 Score=25.85 Aligned_cols=30 Identities=10% Similarity=0.003 Sum_probs=24.5
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVD 174 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~ 174 (280)
.+.+.++++.++++|.+++.+|+.....+.
T Consensus 85 t~~~i~~~~~ak~~g~~ii~IT~~~~s~la 114 (179)
T TIGR03127 85 TESLVTVAKKAKEIGATVAAITTNPESTLG 114 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence 467888999999999999999987654443
No 354
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=34.54 E-value=1.4e+02 Score=23.78 Aligned_cols=79 Identities=15% Similarity=0.174 Sum_probs=49.0
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHH-HcCCc-ccceeeCCCC------------CCCCChHHHHHH
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHN-RFGIT-FSPALSREFR------------PYKPDPGPLLHI 205 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~-~~g~~-fd~v~~~~~~------------~~Kp~~~~~~~~ 205 (280)
...+...|+..+++.||+-++.+-.+..... ++..-+ .-+++ +|.|+-++.+ ..|+.|..++.+
T Consensus 26 ~s~~y~~GAd~Ll~~Lr~g~~dv~yMpAH~~--q~~FPqtme~L~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~li 103 (254)
T COG5426 26 TSVTYHEGADPLLKALRGGEYDVTYMPAHDA--QEKFPQTMEGLDAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLI 103 (254)
T ss_pred cceecccCchHHHHHHhCCCcceEEechHHH--HHhcchhhhhhcccceEEEeecCCceeeccccceeecccCccHHHHH
Confidence 3456778999999999999999988876421 222211 22334 7887766543 457777777665
Q ss_pred HHhcCCCCCcEEEEcC
Q 023578 206 CSTWEVQPNEVMMVGD 221 (280)
Q Consensus 206 ~~~lgi~~~~~v~iGD 221 (280)
.+-.+ ...-.+|||-
T Consensus 104 kdyV~-~GGGLLMiGG 118 (254)
T COG5426 104 KDYVE-NGGGLLMIGG 118 (254)
T ss_pred HHHHh-cCCcEEEEcc
Confidence 55332 2233556665
No 355
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=33.80 E-value=47 Score=28.65 Aligned_cols=29 Identities=17% Similarity=0.056 Sum_probs=25.3
Q ss_pred cccCcCHHHHHHHhhhCCCeEEEEeCCch
Q 023578 142 LQIMPGTAQLCGFLDSKKIRRGLITRNIK 170 (280)
Q Consensus 142 ~~~~pg~~~~l~~L~~~g~~i~ivS~~~~ 170 (280)
..+.|++.++++.++++|..+.++||+.-
T Consensus 83 PLL~pdl~eiv~~~~~~g~~v~l~TNG~l 111 (318)
T TIGR03470 83 PLLHPEIDEIVRGLVARKKFVYLCTNALL 111 (318)
T ss_pred ccccccHHHHHHHHHHcCCeEEEecCcee
Confidence 34578999999999999999999999864
No 356
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=33.32 E-value=2.7e+02 Score=22.81 Aligned_cols=102 Identities=10% Similarity=0.030 Sum_probs=57.3
Q ss_pred eCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHH-HHHHHHhcC---CCCCcEEEEcC-CchhhHHHHHHcCCcEEEE
Q 023578 166 TRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGP-LLHICSTWE---VQPNEVMMVGD-SLKDDVACGKRAGAFTCLL 240 (280)
Q Consensus 166 S~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~-~~~~~~~lg---i~~~~~v~iGD-s~~~Di~~a~~~G~~~i~v 240 (280)
++......+++++.+|-+ .+..+ ++.. ...+++++- .++...+.|-| ...++++..++.|...+.+
T Consensus 113 ~~~~~~SiR~llQ~~GTd--------~~R~~-d~~~Wvr~a~~~~~~~~~~~~~~vVVTDVRf~nEie~lre~Gg~iV~V 183 (227)
T PHA02575 113 NNNNPWSIRRLMQTLGTD--------IVVNF-NKMYWVKLFALKYLDKFKSDYDYFIVTDVRQDHEMELVRAMGATVIHV 183 (227)
T ss_pred CCCCCCCHHHHHHHhcCc--------eeeec-CcCHhHHHHHHHHHHhhhccCCCEEEeCCCChhHHHHHHHcCCEEEEE
Confidence 344445577777888754 11111 1222 233333321 13445677777 3348999999999989999
Q ss_pred cCCCCCCcc---ccccCCCCCCEEEcC---HHHHHHHHHhcc
Q 023578 241 DETGRYSAD---DFTKSNLQPDFRVSS---LTEVLSILEANF 276 (280)
Q Consensus 241 ~~~~~~~~~---~~~~~~~~~d~v~~~---~~dl~~~l~~~~ 276 (280)
.+++..... +..--....|+++.+ +.||.+.|++++
T Consensus 184 ~R~~~~vd~H~SE~gLd~~~~D~vI~NdGtleeL~~qV~~ll 225 (227)
T PHA02575 184 VRDTGLVDTHSTEAGLPIQPGDIVITNNGTLEELKSKILNLI 225 (227)
T ss_pred ecCCCCccCCCCccCCCCCCCCEEEEcCCCHHHHHHHHHHHh
Confidence 986532111 111013678888875 555666666554
No 357
>PHA01976 helix-turn-helix protein
Probab=33.17 E-value=25 Score=22.08 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=29.6
Q ss_pred HHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcE
Q 023578 174 DLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEV 216 (280)
Q Consensus 174 ~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~ 216 (280)
..+.+.+|+.-..+...+.+...|....+..+++.+|++++..
T Consensus 19 ~~lA~~~gvs~~~v~~~e~g~~~p~~~~l~~ia~~l~v~~~~l 61 (67)
T PHA01976 19 PELSRRAGVRHSLIYDFEADKRLPNLKTLLRLADALGVTLDWL 61 (67)
T ss_pred HHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 4455666765232333455666899999999999999987653
No 358
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=33.06 E-value=47 Score=21.42 Aligned_cols=55 Identities=5% Similarity=-0.037 Sum_probs=31.8
Q ss_pred EEEEeCCchHHHHHHHHHcCCc-ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCC
Q 023578 162 RGLITRNIKEAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDS 222 (280)
Q Consensus 162 i~ivS~~~~~~~~~~l~~~g~~-fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs 222 (280)
+++|++ ..++.+++..+++ .+.+.--. .+=+..++..++++.|+.+.++|.|||-
T Consensus 10 ~~~V~g---~~ier~~~~~~~~~~e~~~~f~---~~L~~~Gv~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 10 VFVVSG---KKIERWVAKTPFNNDENLRRFA---RKLKKLGVEDALRKAGAKDGDTVRIGDF 65 (69)
T ss_pred eEEEec---hHHHHHHHHcCCCCHHHHHHHH---HHHHHCCHHHHHHHcCCCCCCEEEEccE
Confidence 456655 3466666666655 22211000 0001124567888899999999999984
No 359
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=32.99 E-value=1e+02 Score=22.66 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=28.9
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCccc
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFS 185 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd 185 (280)
|.+.++.+.+++.|+.++.+|......++...+..++.|.
T Consensus 49 ~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~ 88 (149)
T cd03018 49 CALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFP 88 (149)
T ss_pred HHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCce
Confidence 4455666777778888888887776677777777776544
No 360
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=32.98 E-value=46 Score=21.81 Aligned_cols=22 Identities=14% Similarity=-0.132 Sum_probs=19.8
Q ss_pred CcCHHHHHHHhhhCCCeEEEEe
Q 023578 145 MPGTAQLCGFLDSKKIRRGLIT 166 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS 166 (280)
.+++.++++.++++|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4678899999999999999998
No 361
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=32.94 E-value=44 Score=20.57 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=16.0
Q ss_pred cCHHHHHHHhhhCCCeEEEEeC
Q 023578 146 PGTAQLCGFLDSKKIRRGLITR 167 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~ 167 (280)
|+-.+.|+.|.+.|.+|.|++-
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~ 23 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTY 23 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--H
T ss_pred cHHHHHHHHHHHCCCeEEecCc
Confidence 4557889999999999999884
No 362
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=32.92 E-value=48 Score=23.85 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=22.3
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCCchHH
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRNIKEA 172 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~~~~~ 172 (280)
+.+.++++.++++|.+++++|+.....
T Consensus 74 ~~~~~~~~~a~~~g~~iv~iT~~~~~~ 100 (139)
T cd05013 74 KETVEAAEIAKERGAKVIAITDSANSP 100 (139)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCh
Confidence 567888999999999999999876543
No 363
>smart00497 IENR1 Intron encoded nuclease repeat motif. Repeat of unknown function, but possibly DNA-binding via helix-turn-helix motif (Ponting, unpublished).
Probab=32.78 E-value=61 Score=19.07 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=23.5
Q ss_pred ccEEEEeCCCcccCCCCCHHHHHHHHhCCch
Q 023578 68 LRGVVFDMDGTLTVPVIDFPAMYRAVLGEDE 98 (280)
Q Consensus 68 ~k~iiFD~DGTL~d~~~~~~~~~~~~~g~~~ 98 (280)
..+..+|.+|+++.......++-+.. |...
T Consensus 2 k~V~~~d~~~~~i~~f~S~~eAa~~l-g~~~ 31 (53)
T smart00497 2 KPVYVYDLDGNLIGEFSSIREAAKYL-GISH 31 (53)
T ss_pred ccEEEEeCCCCEEEEecCHHHHHHHh-CCCH
Confidence 46788999999997777787887777 6654
No 364
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=32.40 E-value=3e+02 Score=22.95 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=34.4
Q ss_pred CcEEEEcCCchhh---HHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHH
Q 023578 214 NEVMMVGDSLKDD---VACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSIL 272 (280)
Q Consensus 214 ~~~v~iGDs~~~D---i~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l 272 (280)
.++++|-|-. .| +.-|+.+|+++|.+-++. .. + ...||+|...+|-..-+
T Consensus 157 Pd~l~ViDp~-~e~iAv~EA~klgIPVvAlvDTn--~d---p---d~VD~~IP~Ndda~rsi 209 (252)
T COG0052 157 PDVLFVIDPR-KEKIAVKEANKLGIPVVALVDTN--CD---P---DGVDYVIPGNDDAIRSI 209 (252)
T ss_pred CCEEEEeCCc-HhHHHHHHHHHcCCCEEEEecCC--CC---C---ccCceeecCCChHHHHH
Confidence 4577777876 55 455677899999988632 21 1 38899999887755544
No 365
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=32.28 E-value=79 Score=28.83 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=14.3
Q ss_pred CccEEEEeCCCcccCCCC
Q 023578 67 RLRGVVFDMDGTLTVPVI 84 (280)
Q Consensus 67 ~~k~iiFD~DGTL~d~~~ 84 (280)
+.+.|++|+|+|..+...
T Consensus 138 ~~~~i~LDiD~T~~~~~G 155 (448)
T PF13701_consen 138 PPKEIVLDIDSTVDDVHG 155 (448)
T ss_pred ccceEEEecccccccchh
Confidence 468999999999976433
No 366
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=32.24 E-value=1.1e+02 Score=23.49 Aligned_cols=57 Identities=9% Similarity=-0.018 Sum_probs=38.7
Q ss_pred HHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHh
Q 023578 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICST 208 (280)
Q Consensus 149 ~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~ 208 (280)
.++++.+++.|++++.+|.....-++.+.+.+.- -..++.+..+.+|. ..+..++..
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~-k~~vl~G~SGvGKS--SLiN~L~~~ 58 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG-KTSVLLGQSGVGKS--SLINALLPE 58 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT-SEEEEECSTTSSHH--HHHHHHHTS
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC-CEEEEECCCCCCHH--HHHHHHHhh
Confidence 4678888999999999998766667777666643 24466677777775 445444443
No 367
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=32.22 E-value=90 Score=25.56 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=26.5
Q ss_pred cCcCH-HHHHHHhhhCCCeEEEEeCCch----HHHHHHHHH
Q 023578 144 IMPGT-AQLCGFLDSKKIRRGLITRNIK----EAVDLFHNR 179 (280)
Q Consensus 144 ~~pg~-~~~l~~L~~~g~~i~ivS~~~~----~~~~~~l~~ 179 (280)
+.++. .++++.+++.|+++.+.||+.. +..+..++.
T Consensus 83 l~~~~~~~l~~~~k~~g~~i~l~TNG~~~~~~~~~~~ll~~ 123 (246)
T PRK11145 83 LQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDV 123 (246)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCCCcchHHHHHHHHh
Confidence 45664 5899999999999999999873 344444443
No 368
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=32.13 E-value=2.6e+02 Score=22.23 Aligned_cols=98 Identities=5% Similarity=-0.069 Sum_probs=51.1
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHH-HHHHc--CC-----ccccee-eCC------CCCCCCChHHHHHHHHhc
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDL-FHNRF--GI-----TFSPAL-SRE------FRPYKPDPGPLLHICSTW 209 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~-~l~~~--g~-----~fd~v~-~~~------~~~~Kp~~~~~~~~~~~l 209 (280)
...+.+.+.....+|-++.++-||.....-. +..++ ++ .+..+. +.+ ....-.-.+.|.+-++.+
T Consensus 27 i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~~~ 106 (196)
T PRK10886 27 ISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRAL 106 (196)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHHHc
Confidence 4455566666667778999999876554332 22222 11 122221 111 111111234555555544
Q ss_pred CCCCCcEEEEcCCchh-----hHHHHHHcCCcEEEEcC
Q 023578 210 EVQPNEVMMVGDSLKD-----DVACGKRAGAFTCLLDE 242 (280)
Q Consensus 210 gi~~~~~v~iGDs~~~-----Di~~a~~~G~~~i~v~~ 242 (280)
+-+.+=+++|-.|..+ =++.|+..|+.+|.++.
T Consensus 107 ~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~ 144 (196)
T PRK10886 107 GHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTG 144 (196)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4333334455444312 26677888999999985
No 369
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=32.00 E-value=3e+02 Score=22.96 Aligned_cols=55 Identities=7% Similarity=-0.052 Sum_probs=28.9
Q ss_pred HHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc-ccceeeCCCCCCCCChHHHHHHHHh
Q 023578 151 LCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICST 208 (280)
Q Consensus 151 ~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-fd~v~~~~~~~~Kp~~~~~~~~~~~ 208 (280)
+-+.++++|+.+.+++.+.....+..++.+--. .|+++-... ..+...+....+.
T Consensus 23 Ie~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~---~~~~~~l~~~~~~ 78 (279)
T PF00532_consen 23 IEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASS---ENDDEELRRLIKS 78 (279)
T ss_dssp HHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESS---SCTCHHHHHHHHT
T ss_pred HHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecc---cCChHHHHHHHHc
Confidence 446678899998877654444444444443222 677554321 1222445555554
No 370
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=31.97 E-value=46 Score=25.73 Aligned_cols=28 Identities=7% Similarity=-0.026 Sum_probs=23.8
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCchH
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIKE 171 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~~ 171 (280)
-.+++.++++.++++|.+++.+|+....
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3578999999999999999999987543
No 371
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=31.75 E-value=3.3e+02 Score=23.28 Aligned_cols=89 Identities=13% Similarity=0.062 Sum_probs=52.0
Q ss_pred HHHhhhCCCeEEEEeCCchHHHH-----HHHHHcCCc---ccceee-CCC------CCCCCChHHHHHHHHhcCCCCCcE
Q 023578 152 CGFLDSKKIRRGLITRNIKEAVD-----LFHNRFGIT---FSPALS-REF------RPYKPDPGPLLHICSTWEVQPNEV 216 (280)
Q Consensus 152 l~~L~~~g~~i~ivS~~~~~~~~-----~~l~~~g~~---fd~v~~-~~~------~~~Kp~~~~~~~~~~~lgi~~~~~ 216 (280)
.+.++ +|-+++++-+|.....- .....+++. +..++. ++. .....+...+..-+...++.+.++
T Consensus 52 ~~~l~-~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~~ed~~~~~~~~l~a~~l~~~Dv 130 (296)
T PRK12570 52 VAAFK-KGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEGAEDDPELGAQDLKAIGLTADDV 130 (296)
T ss_pred HHHHH-cCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccccCCcHHHHHHHHHHcCCCCCCE
Confidence 34444 45688888887765432 122334444 222222 221 122345666777777788877665
Q ss_pred E-EEcCCchhh------HHHHHHcCCcEEEEcC
Q 023578 217 M-MVGDSLKDD------VACGKRAGAFTCLLDE 242 (280)
Q Consensus 217 v-~iGDs~~~D------i~~a~~~G~~~i~v~~ 242 (280)
+ .|--|. +. ++.|+..|+.++.+..
T Consensus 131 vI~IS~SG-~T~~vi~al~~Ak~~Ga~~IaIT~ 162 (296)
T PRK12570 131 VVGIAASG-RTPYVIGALEYAKQIGATTIALSC 162 (296)
T ss_pred EEEEeCCC-CCHHHHHHHHHHHHCCCeEEEEEC
Confidence 4 454444 44 7888889999999985
No 372
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=31.74 E-value=3.3e+02 Score=24.49 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcccCcCH-HHHHHHhhhCCCeEEEEeCCchHHHHHHHH
Q 023578 123 LQRHAYQTIADFERQGLDRLQIMPGT-AQLCGFLDSKKIRRGLITRNIKEAVDLFHN 178 (280)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~pg~-~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~ 178 (280)
..+.+++..++..++..+...+..|+ .+.++.+++.|--+.|||-+-.-....++.
T Consensus 138 t~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~ 194 (423)
T TIGR00190 138 DEDDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLH 194 (423)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHH
Confidence 34556666677777777888888885 778999999888899999877655555543
No 373
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=31.22 E-value=91 Score=25.24 Aligned_cols=37 Identities=22% Similarity=0.163 Sum_probs=27.6
Q ss_pred ccCcC-HHHHHHHhhhCCCeEEEEeCCc----hHHHHHHHHH
Q 023578 143 QIMPG-TAQLCGFLDSKKIRRGLITRNI----KEAVDLFHNR 179 (280)
Q Consensus 143 ~~~pg-~~~~l~~L~~~g~~i~ivS~~~----~~~~~~~l~~ 179 (280)
.+.++ +.++++.+++.|+++.+.||+. .+....+++.
T Consensus 77 ll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~ 118 (235)
T TIGR02493 77 LLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEY 118 (235)
T ss_pred ccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHh
Confidence 34566 4589999999999999999993 4455555554
No 374
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=30.79 E-value=2e+02 Score=29.09 Aligned_cols=88 Identities=14% Similarity=0.114 Sum_probs=52.8
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHH-HHHHHHcC-------CcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcE
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAV-DLFHNRFG-------ITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEV 216 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~-~~~l~~~g-------~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~ 216 (280)
-.+..+.++....+|++++.+-...-..- ....+++. ++|-+.+--+. .-|+.......-+.+-+ ...+
T Consensus 649 P~dy~evl~~Yt~~GfRVIAlA~K~L~~~~~~~~~~~~Rd~vEs~l~FlGLiVmeN-kLK~~T~~VI~eL~~An--IRtV 725 (1140)
T KOG0208|consen 649 PADYQEVLKEYTHQGFRVIALASKELETSTLQKAQKLSRDTVESNLEFLGLIVMEN-KLKEETKRVIDELNRAN--IRTV 725 (1140)
T ss_pred CccHHHHHHHHHhCCeEEEEEecCccCcchHHHHhhccHhhhhccceeeEEEEeec-ccccccHHHHHHHHhhc--ceEE
Confidence 45788889999999999888765332221 11111211 11333332222 23444444434444444 3467
Q ss_pred EEEcCCchhhHHHHHHcCC
Q 023578 217 MMVGDSLKDDVACGKRAGA 235 (280)
Q Consensus 217 v~iGDs~~~Di~~a~~~G~ 235 (280)
++-||+...-+..|+.+||
T Consensus 726 McTGDNllTaisVakeCgm 744 (1140)
T KOG0208|consen 726 MCTGDNLLTAISVAKECGM 744 (1140)
T ss_pred EEcCCchheeeehhhcccc
Confidence 8889999999999999998
No 375
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=30.51 E-value=75 Score=20.77 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=34.0
Q ss_pred CCCChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCC
Q 023578 195 YKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGA 235 (280)
Q Consensus 195 ~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~ 235 (280)
.-|-...++.+++++++++..+..|-+.. -.+..+..+|-
T Consensus 25 ~aPftAvlkfaAEeFkv~~~TsAiiTndG-vGINP~qtAGn 64 (82)
T cd01766 25 STPFTAVLKFAAEEFKVPAATSAIITNDG-IGINPAQTAGN 64 (82)
T ss_pred cCchHHHHHHHHHhcCCCccceeEEecCc-cccChhhcccc
Confidence 34667788999999999999988888888 89999988885
No 376
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=30.48 E-value=2.2e+02 Score=25.23 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=22.6
Q ss_pred ccCcCHHHHHHHhhhC-CCe-EEEEeCCch
Q 023578 143 QIMPGTAQLCGFLDSK-KIR-RGLITRNIK 170 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~-g~~-i~ivS~~~~ 170 (280)
.+.+++.++++.+++. |+. +.+.||+..
T Consensus 118 llr~dl~eli~~l~~~~gi~~i~itTNG~l 147 (373)
T PLN02951 118 TLRKDIEDICLQLSSLKGLKTLAMTTNGIT 147 (373)
T ss_pred cchhhHHHHHHHHHhcCCCceEEEeeCcch
Confidence 4567899999999986 875 888999853
No 377
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=30.45 E-value=2.2e+02 Score=22.13 Aligned_cols=57 Identities=2% Similarity=-0.129 Sum_probs=38.8
Q ss_pred HHHHHHHhhhCCCeEEEEeC------CchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCC
Q 023578 148 TAQLCGFLDSKKIRRGLITR------NIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQ 212 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~------~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~ 212 (280)
+.+.....++.|.+++|+.+ ++++++-..+..+|+. .|++.. -..++..-+...|+-
T Consensus 84 i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~--aVIA~S------FarI~~~Nli~~Gll 146 (171)
T cd01580 84 IYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVK--AVIAES------FERIHRSNLVGMGIL 146 (171)
T ss_pred HHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCC--EEEEcc------HHHHHHhhHhhcCcc
Confidence 56788888999999999975 6778888888888864 444322 224555555555553
No 378
>PRK13937 phosphoheptose isomerase; Provisional
Probab=30.33 E-value=57 Score=25.63 Aligned_cols=30 Identities=7% Similarity=-0.138 Sum_probs=24.4
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCchHHH
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAV 173 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~ 173 (280)
-.+.+.+.++.++++|.+++.+|+......
T Consensus 118 ~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L 147 (188)
T PRK13937 118 NSPNVLAALEKARELGMKTIGLTGRDGGKM 147 (188)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 357788999999999999999998654443
No 379
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=30.24 E-value=29 Score=23.09 Aligned_cols=17 Identities=24% Similarity=0.106 Sum_probs=13.6
Q ss_pred ccEEEEeCCCcccCCCC
Q 023578 68 LRGVVFDMDGTLTVPVI 84 (280)
Q Consensus 68 ~k~iiFD~DGTL~d~~~ 84 (280)
.-.++++-|||.+|++.
T Consensus 40 ~~~lvL~eDGTeVddEe 56 (78)
T cd01615 40 PVTLVLEEDGTEVDDEE 56 (78)
T ss_pred CeEEEEeCCCcEEccHH
Confidence 35699999999997654
No 380
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=30.19 E-value=1.4e+02 Score=22.80 Aligned_cols=39 Identities=5% Similarity=0.015 Sum_probs=28.3
Q ss_pred CHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceee
Q 023578 147 GTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALS 189 (280)
Q Consensus 147 g~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~ 189 (280)
.+.++++..++.|++++|+|+++ .++..++.... +++++
T Consensus 74 ~Ig~l~~lae~~g~~v~i~~Ggt--~ar~~ik~~~p--~~iig 112 (158)
T PF01976_consen 74 DIGDLKKLAEKYGYKVYIATGGT--LARKIIKEYRP--KAIIG 112 (158)
T ss_pred chhHHHHHHHHcCCEEEEEcChH--HHHHHHHHhCC--CEEEE
Confidence 47778888888999999999985 45666666553 34443
No 381
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=30.08 E-value=4.2e+02 Score=23.97 Aligned_cols=118 Identities=8% Similarity=0.004 Sum_probs=69.0
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCCchH--HHHHHHHHcCCc-ccc-eeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcC
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRNIKE--AVDLFHNRFGIT-FSP-ALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGD 221 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~~~~--~~~~~l~~~g~~-fd~-v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGD 221 (280)
-+..++++.+++.++..+++...... -+...++.+|+. |-. ..+..... +-...+.+++++|++......+.|
T Consensus 55 ~d~~~l~~~a~~~~iD~Vv~g~E~~l~~glad~~~~~Gip~~Gp~~~aa~le~---dK~~~K~~l~~~gIpt~~~~~~~~ 131 (426)
T PRK13789 55 LDKSSVQSFLKSNPFDLIVVGPEDPLVAGFADWAAELGIPCFGPDSYCAQVEG---SKHFAKSLMKEAKIPTASYKTFTE 131 (426)
T ss_pred CCHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHHHcCCCcCCCHHHHHHHHc---CHHHHHHHHHHcCCCCCCeEeeCC
Confidence 45666778888888888886433222 122345667876 210 00111111 224667889999997666666655
Q ss_pred CchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhcc
Q 023578 222 SLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANF 276 (280)
Q Consensus 222 s~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~ 276 (280)
.. .-...++..|.++|.=... .. ....-+++.+..|+.+.+++++
T Consensus 132 ~~-ea~~~~~~~~~PvVVKp~~-~~--------~gkGV~vv~~~eel~~a~~~~~ 176 (426)
T PRK13789 132 YS-SSLSYLESEMLPIVIKADG-LA--------AGKGVTVATEKKMAKRALKEIF 176 (426)
T ss_pred HH-HHHHHHHhcCCCEEEEeCC-CC--------CCCcEEEECCHHHHHHHHHHHH
Confidence 44 3344566778876653321 11 1244568899999998887764
No 382
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=29.95 E-value=3.9e+02 Score=23.62 Aligned_cols=117 Identities=8% Similarity=0.028 Sum_probs=67.5
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCCchHHHHH---HHHHcCCcccceeeCC--CCCCCCChHHHHHHHHhcCCCCCcEEEEc
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDL---FHNRFGITFSPALSRE--FRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~---~l~~~g~~fd~v~~~~--~~~~Kp~~~~~~~~~~~lgi~~~~~v~iG 220 (280)
.+...+++.+++.++..+++.... ..... .++..|+. +++.. ...---+-...+.+++++|++......+.
T Consensus 14 ~d~~~l~~~~~~~~id~vi~g~E~-~l~~~~~d~l~~~Gi~---~~g~s~~a~~l~~dK~~~k~~l~~~gIptp~~~~~~ 89 (379)
T PRK13790 14 SDHQAILDFAKQQNVDWVVIGPEQ-PLIDGLADILRANGFK---VFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVE 89 (379)
T ss_pred CCHHHHHHHHHHhCCCEEEECCcH-HHHHHHHHHHHhCCCc---EECCCHHHHHHhCCHHHHHHHHHHCCCCCCCEEEEC
Confidence 345667777888888888776544 33333 33445543 11111 00001122456788999999766666666
Q ss_pred CCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhcc
Q 023578 221 DSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANF 276 (280)
Q Consensus 221 Ds~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~ 276 (280)
|.. .-.+.+...|.+.+.=...+.. ...-.++.+..|+.+.++.++
T Consensus 90 ~~~-ea~~~~~~~g~PvVvKp~~~~~---------gkGV~iv~~~~el~~a~~~~~ 135 (379)
T PRK13790 90 RKK-DALTYIENCELPVVVKKDGLAA---------GKGVIIADTIEAARSAIEIMY 135 (379)
T ss_pred CHH-HHHHHHHhcCCCEEEEeCCCCC---------CCCEEEECCHHHHHHHHHHHH
Confidence 544 4445566778876653322211 234467889999988887654
No 383
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=29.81 E-value=3e+02 Score=24.80 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcccCcCH-HHHHHHhhhCCCeEEEEeCCchHHHHHHH
Q 023578 123 LQRHAYQTIADFERQGLDRLQIMPGT-AQLCGFLDSKKIRRGLITRNIKEAVDLFH 177 (280)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~pg~-~~~l~~L~~~g~~i~ivS~~~~~~~~~~l 177 (280)
..+.+++..++..++..+...+.-|+ .+.++.+++.+--+.|||-+-.-....++
T Consensus 141 t~d~~~~~ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~ 196 (431)
T PRK13352 141 TEDDLFDVIEKQAKDGVDFMTIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWML 196 (431)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHH
Confidence 34556666667777777888888885 77899999988889999987766555554
No 384
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=29.31 E-value=39 Score=24.19 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=15.4
Q ss_pred CccEEEEeCCCccc-CCCCC
Q 023578 67 RLRGVVFDMDGTLT-VPVID 85 (280)
Q Consensus 67 ~~k~iiFD~DGTL~-d~~~~ 85 (280)
..++-+||=||+|+ ||...
T Consensus 18 ~~RARlyd~dG~Ll~DSr~l 37 (112)
T PF13756_consen 18 RTRARLYDPDGNLLADSRVL 37 (112)
T ss_pred CceEEEECCCCCEEeecccc
Confidence 46999999999999 66543
No 385
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=29.24 E-value=4.3e+02 Score=23.79 Aligned_cols=13 Identities=38% Similarity=0.406 Sum_probs=8.1
Q ss_pred CCCCCEEEcCHHH
Q 023578 255 NLQPDFRVSSLTE 267 (280)
Q Consensus 255 ~~~~d~v~~~~~d 267 (280)
..++|+|+.|.+.
T Consensus 198 ~~GaDIVvhSaTK 210 (396)
T COG0626 198 ELGADIVVHSATK 210 (396)
T ss_pred hcCCCEEEEeccc
Confidence 3567777776543
No 386
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=29.06 E-value=3.1e+02 Score=22.15 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=31.1
Q ss_pred CChHHHHHHHHhcCCCCCcEEEEcC--CchhhHHH-HHHcCCcEEEEc
Q 023578 197 PDPGPLLHICSTWEVQPNEVMMVGD--SLKDDVAC-GKRAGAFTCLLD 241 (280)
Q Consensus 197 p~~~~~~~~~~~lgi~~~~~v~iGD--s~~~Di~~-a~~~G~~~i~v~ 241 (280)
++-+.+..+.+..+++ +++.|+ +. .|+.. +...|+..|.+.
T Consensus 184 ~~~~~~~~i~~~~~ip---via~GGi~s~-~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 184 YDLELIKTVSDAVSIP---VIALGGAGSL-DDLVEVALEAGASAVAAA 227 (232)
T ss_pred CCHHHHHHHHhhCCCC---EEEECCCCCH-HHHHHHHHHcCCCEEEEe
Confidence 5567778888776554 888884 45 68888 888999988875
No 387
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=29.01 E-value=4.3e+02 Score=23.72 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=18.5
Q ss_pred CCCCCcEEEEcCCc-hhhHHHHHHcCCcEEEEc
Q 023578 210 EVQPNEVMMVGDSL-KDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 210 gi~~~~~v~iGDs~-~~Di~~a~~~G~~~i~v~ 241 (280)
|.+|++++|-|... ..+++.|.+.|+.++-++
T Consensus 93 G~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vd 125 (394)
T COG0019 93 GFPPERIVFSGPAKSEEEIAFALELGIKLINVD 125 (394)
T ss_pred CCChhhEEECCCCCCHHHHHHHHHcCCcEEEeC
Confidence 66666666666643 035555666666655544
No 388
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=28.84 E-value=1.1e+02 Score=20.96 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=28.7
Q ss_pred HHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc
Q 023578 150 QLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (280)
Q Consensus 150 ~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~ 183 (280)
.+.+.|.++|++++.-.........+.++.+|..
T Consensus 43 ~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 43 HLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGFI 76 (89)
T ss_pred HHHHHHHHCCCCeEeehHhccHHHHHHHHHCCCe
Confidence 4678999999999999988778888888888854
No 389
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=28.82 E-value=3.2e+02 Score=22.19 Aligned_cols=94 Identities=10% Similarity=0.038 Sum_probs=52.8
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCC--chHHHHHHHHHcCCcccceeeCCCC--CCCCChHHHHHHH---Hhc---CCCCC
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRN--IKEAVDLFHNRFGITFSPALSREFR--PYKPDPGPLLHIC---STW---EVQPN 214 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~--~~~~~~~~l~~~g~~fd~v~~~~~~--~~Kp~~~~~~~~~---~~l---gi~~~ 214 (280)
.+...+.++.+|+.|.+.+++-|- +.+.++.+++..+.- -+.+.+.+ ..+--+..++++. +.. |.. -
T Consensus 92 ~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~v--lvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~-~ 168 (220)
T PRK08883 92 SEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLI--LLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRD-I 168 (220)
T ss_pred cccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeE--EEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCC-e
Confidence 456788999999999999999884 444555555554321 12333322 2222333333322 222 211 1
Q ss_pred cEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 215 EVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 215 ~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
.+.+.|-=...++....++|...+.+.
T Consensus 169 ~I~vdGGI~~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 169 RLEIDGGVKVDNIREIAEAGADMFVAG 195 (220)
T ss_pred eEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 233444333368888889999877664
No 390
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=28.58 E-value=30 Score=23.16 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=13.2
Q ss_pred cEEEEeCCCcccCCCC
Q 023578 69 RGVVFDMDGTLTVPVI 84 (280)
Q Consensus 69 k~iiFD~DGTL~d~~~ 84 (280)
-.++++-|||.+|++.
T Consensus 43 ~~lvL~eDGT~VddEe 58 (80)
T cd06536 43 ITLVLAEDGTIVEDED 58 (80)
T ss_pred eEEEEecCCcEEccHH
Confidence 4689999999997654
No 391
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=28.46 E-value=5e+02 Score=24.36 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=63.4
Q ss_pred HHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEE--EEcCCchhh
Q 023578 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVM--MVGDSLKDD 226 (280)
Q Consensus 149 ~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v--~iGDs~~~D 226 (280)
..+.+.|+++|++++++.+.. +..+.. ++.|. . ++.+|... ..++++.|++..+.+ .++|+. .+
T Consensus 430 ~~la~~L~~~g~~vvvId~d~-~~~~~~-~~~g~--~-~i~GD~~~--------~~~L~~a~i~~a~~viv~~~~~~-~~ 495 (558)
T PRK10669 430 SLLGEKLLAAGIPLVVIETSR-TRVDEL-RERGI--R-AVLGNAAN--------EEIMQLAHLDCARWLLLTIPNGY-EA 495 (558)
T ss_pred HHHHHHHHHCCCCEEEEECCH-HHHHHH-HHCCC--e-EEEcCCCC--------HHHHHhcCccccCEEEEEcCChH-HH
Confidence 678899999999998888764 334444 34553 2 33333221 367788888777744 346665 33
Q ss_pred H---HHHHHc-CCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhccC
Q 023578 227 V---ACGKRA-GAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANFD 277 (280)
Q Consensus 227 i---~~a~~~-G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~~ 277 (280)
. .++++. +-..+.+.- .+..+...-.+.++|+++.--.++.+.+.+...
T Consensus 496 ~~iv~~~~~~~~~~~iiar~--~~~~~~~~l~~~Gad~vv~p~~~~a~~i~~~l~ 548 (558)
T PRK10669 496 GEIVASAREKRPDIEIIARA--HYDDEVAYITERGANQVVMGEREIARTMLELLE 548 (558)
T ss_pred HHHHHHHHHHCCCCeEEEEE--CCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhc
Confidence 2 333332 222232221 111111111257899999888877776665443
No 392
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=28.11 E-value=1.6e+02 Score=26.33 Aligned_cols=81 Identities=17% Similarity=0.071 Sum_probs=56.8
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc--ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEc
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT--FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~--fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iG 220 (280)
.-.|++..++..+.+- +++++.|.....+.+.+++.++-. |...+-.+.+. -+.+. |..-+.+++.+.+.++.|+
T Consensus 252 ~kRp~l~~fl~~ls~~-~~l~~ft~s~~~y~~~v~d~l~~~k~~~~~lfr~sc~-~~~G~-~ikDis~i~r~l~~viiId 328 (390)
T COG5190 252 SKRPELDYFLGKLSKI-HELVYFTASVKRYADPVLDILDSDKVFSHRLFRESCV-SYLGV-YIKDISKIGRSLDKVIIID 328 (390)
T ss_pred cCChHHHHHHhhhhhh-EEEEEEecchhhhcchHHHhccccceeehhhhcccce-eccCc-hhhhHHhhccCCCceEEee
Confidence 4578999999999887 899999999888888887777654 22222122111 12223 4456677788889999999
Q ss_pred CCchhhH
Q 023578 221 DSLKDDV 227 (280)
Q Consensus 221 Ds~~~Di 227 (280)
+++ .=.
T Consensus 329 ~~p-~SY 334 (390)
T COG5190 329 NSP-ASY 334 (390)
T ss_pred CCh-hhh
Confidence 999 444
No 393
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=27.99 E-value=3e+02 Score=24.30 Aligned_cols=24 Identities=8% Similarity=-0.004 Sum_probs=20.0
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCCc
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRNI 169 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~~ 169 (280)
..+.+.+..|+++|+.+++||++.
T Consensus 31 ~~l~~~ia~L~~~G~eVilVSSGA 54 (369)
T COG0263 31 EELVRQVAALHKAGHEVVLVSSGA 54 (369)
T ss_pred HHHHHHHHHHHhCCCEEEEEccch
Confidence 345567899999999999999975
No 394
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=27.95 E-value=3.5e+02 Score=23.42 Aligned_cols=74 Identities=12% Similarity=0.054 Sum_probs=44.4
Q ss_pred HHHHHHHhhhCCCe--EEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCC--cEEEEcCCc
Q 023578 148 TAQLCGFLDSKKIR--RGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPN--EVMMVGDSL 223 (280)
Q Consensus 148 ~~~~l~~L~~~g~~--i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~--~~v~iGDs~ 223 (280)
+.++.+.+.+.+.+ +.++||-..-....+.+..|++.+.+++.... -.....-..+.+++|++++ +..++|.+-
T Consensus 108 ~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlgt~--lds~R~~~~la~~l~v~~~~v~~~viGeHg 185 (321)
T PTZ00082 108 MDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMAGV--LDSSRLRTYIAEKLGVNPRDVHASVIGAHG 185 (321)
T ss_pred HHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEecCc--ccHHHHHHHHHHHhCCCcccceeeEEecCC
Confidence 44566666665444 66667655555555556666654556652211 1113456678889999887 466778776
No 395
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=27.48 E-value=99 Score=22.34 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=24.3
Q ss_pred HHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCccc
Q 023578 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFS 185 (280)
Q Consensus 149 ~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd 185 (280)
..+-+.|+++|+.|.++|+.. .+...+..|++|.
T Consensus 16 lala~~L~~rGh~V~~~~~~~---~~~~v~~~Gl~~~ 49 (139)
T PF03033_consen 16 LALARALRRRGHEVRLATPPD---FRERVEAAGLEFV 49 (139)
T ss_dssp HHHHHHHHHTT-EEEEEETGG---GHHHHHHTT-EEE
T ss_pred HHHHHHHhccCCeEEEeeccc---ceecccccCceEE
Confidence 357789999999999999854 3445588998743
No 396
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=27.45 E-value=60 Score=24.53 Aligned_cols=29 Identities=3% Similarity=-0.076 Sum_probs=23.9
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAV 173 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~ 173 (280)
.+.+.+.++.++++|.+++.+|+.....+
T Consensus 92 t~~~~~~~~~a~~~g~~ii~iT~~~~s~l 120 (154)
T TIGR00441 92 SKNVLKAIEAAKDKGMKTITLAGKDGGKM 120 (154)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 56788999999999999999998655433
No 397
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=27.14 E-value=4.3e+02 Score=23.17 Aligned_cols=91 Identities=10% Similarity=-0.032 Sum_probs=49.1
Q ss_pred HHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccce---eeCCCCCCC---CC-hH-----------HHHHHHHhc
Q 023578 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPA---LSREFRPYK---PD-PG-----------PLLHICSTW 209 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v---~~~~~~~~K---p~-~~-----------~~~~~~~~l 209 (280)
...+-+.|+++|+.|.++|+. .....++..|+.|..+ ........+ .. .. .+..+.+.+
T Consensus 12 ~l~lA~~L~~~Gh~V~~~~~~---~~~~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 88 (392)
T TIGR01426 12 TLGVVEELVARGHRVTYATTE---EFAERVEAAGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAEDVLPQLEEAY 88 (392)
T ss_pred cHHHHHHHHhCCCeEEEEeCH---HHHHHHHHcCCEEEecCCcCccccccccccCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 345668899999999999983 3556677888762111 110000000 11 11 111122222
Q ss_pred CCCCCcEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 210 EVQPNEVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 210 gi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
.....++|.++-..-.-...|+..|+.+|.+.
T Consensus 89 ~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 120 (392)
T TIGR01426 89 KGDRPDLIVYDIASWTGRLLARKWDVPVISSF 120 (392)
T ss_pred cCCCCCEEEECCccHHHHHHHHHhCCCEEEEe
Confidence 22223566444332256778899999988775
No 398
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=27.14 E-value=2.3e+02 Score=23.51 Aligned_cols=80 Identities=8% Similarity=-0.039 Sum_probs=49.3
Q ss_pred HHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc---ccceeeC-----C----CCCCCC-ChHHHHHHHHhcCCCCC
Q 023578 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT---FSPALSR-----E----FRPYKP-DPGPLLHICSTWEVQPN 214 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~---fd~v~~~-----~----~~~~Kp-~~~~~~~~~~~lgi~~~ 214 (280)
+.|-+..|+..|..+.+||++...+-++.++.-.+. +...... + ...+.+ -...|+.+..++|+...
T Consensus 37 IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~~~~~s~s~r~~l~~~~~l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~iA 116 (285)
T KOG1154|consen 37 IVEQVSELQRMGREVILVSSGAVAFGRQRLRQELLPSSSMRQTLKPQSELAEKRACAAVGQSGLMALYETLFTQYGITIA 116 (285)
T ss_pred HHHHHHHHHhcCceEEEEecchhhhhHHHhhhhhccchhHHHhhCCccchhhHHHHHHhCcchHHHHHHHHHHHhccchh
Confidence 567788999999999999998766655544322211 1111000 0 001111 13468889999999999
Q ss_pred cEEEEcCCchhhHH
Q 023578 215 EVMMVGDSLKDDVA 228 (280)
Q Consensus 215 ~~v~iGDs~~~Di~ 228 (280)
+++.--.+. .|-.
T Consensus 117 QvLvT~~Di-~d~~ 129 (285)
T KOG1154|consen 117 QVLVTRNDI-LDEQ 129 (285)
T ss_pred eeeecCcch-hhHH
Confidence 998766655 4433
No 399
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=27.06 E-value=3.7e+02 Score=24.39 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=33.2
Q ss_pred CeEEEEeCCchHHHHHHHHHcCCc---ccceeeCCCCCCCCChHHHHHHHHhcCCCC-CcEEEEc
Q 023578 160 IRRGLITRNIKEAVDLFHNRFGIT---FSPALSREFRPYKPDPGPLLHICSTWEVQP-NEVMMVG 220 (280)
Q Consensus 160 ~~i~ivS~~~~~~~~~~l~~~g~~---fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~-~~~v~iG 220 (280)
-+|+|+|+.....+..++..+.-. +..++......+.-.+.-+-.+++.++-.. -+++.|+
T Consensus 130 ~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~ 194 (432)
T TIGR00237 130 KRVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVG 194 (432)
T ss_pred CEEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEe
Confidence 479999997777666666544322 232222222233444455556666555322 3677775
No 400
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=26.98 E-value=67 Score=24.88 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=24.3
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVD 174 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~ 174 (280)
.+.+.++++.++++|.+++.+|+.......
T Consensus 88 t~~~i~~~~~ak~~g~~iI~IT~~~~s~la 117 (179)
T cd05005 88 TSSVVNAAEKAKKAGAKVVLITSNPDSPLA 117 (179)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence 467888999999999999999986654433
No 401
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=26.95 E-value=2.6e+02 Score=22.82 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=54.4
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeC--CchHHHHHHHHHcCCcccceeeCCCC--CCCCChHHHHHHHHhcCCCC---Cc
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITR--NIKEAVDLFHNRFGITFSPALSREFR--PYKPDPGPLLHICSTWEVQP---NE 215 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~--~~~~~~~~~l~~~g~~fd~v~~~~~~--~~Kp~~~~~~~~~~~lgi~~---~~ 215 (280)
+..+...+.++.+|+.|.+.+++=| .+-+.++.+++...+ --+.+-+.+ -.|=-|..++++.+--..-. +-
T Consensus 93 E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~--VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~ 170 (220)
T COG0036 93 EATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDL--VLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDI 170 (220)
T ss_pred ccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCE--EEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCe
Confidence 4567889999999999999999988 555667777777642 222333322 22323344444332222111 22
Q ss_pred EEEEcCCc-hhhHHHHHHcCCcEEEE
Q 023578 216 VMMVGDSL-KDDVACGKRAGAFTCLL 240 (280)
Q Consensus 216 ~v~iGDs~-~~Di~~a~~~G~~~i~v 240 (280)
.+-|+-+. .+.+..+.++|..++..
T Consensus 171 ~IeVDGGI~~~t~~~~~~AGad~~Va 196 (220)
T COG0036 171 LIEVDGGINLETIKQLAAAGADVFVA 196 (220)
T ss_pred EEEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 33444333 13455666789876554
No 402
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=26.94 E-value=2.9e+02 Score=25.62 Aligned_cols=99 Identities=18% Similarity=0.131 Sum_probs=57.3
Q ss_pred CCcccCcCHHHHHHHhhhC--CCeEEEEeCCchHHHHHHHHHcCCc-ccc-eeeCC-CCCCCC-ChHHHHHHHHhcC---
Q 023578 140 DRLQIMPGTAQLCGFLDSK--KIRRGLITRNIKEAVDLFHNRFGIT-FSP-ALSRE-FRPYKP-DPGPLLHICSTWE--- 210 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~--g~~i~ivS~~~~~~~~~~l~~~g~~-fd~-v~~~~-~~~~Kp-~~~~~~~~~~~lg--- 210 (280)
..++..|.+...++.+... .+..-.+ + ......+.+++++. ... ++.++ ...+++ ..++...+.+..+
T Consensus 126 ~~Cp~Cp~~v~~~~~~a~~~~~i~~~~i-d--~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~ 202 (517)
T PRK15317 126 LSCHNCPDVVQALNLMAVLNPNITHTMI-D--GALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARA 202 (517)
T ss_pred CCCCCcHHHHHHHHHHHHhCCCceEEEE-E--chhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccc
Confidence 3456677888888777765 2332233 2 22234455677766 322 33333 223333 3344444443322
Q ss_pred ------CCCCcEEEEcCCchhhHHHHHHc---CCcEEEEcC
Q 023578 211 ------VQPNEVMMVGDSLKDDVACGKRA---GAFTCLLDE 242 (280)
Q Consensus 211 ------i~~~~~v~iGDs~~~Di~~a~~~---G~~~i~v~~ 242 (280)
...-+++.||-++ ..+.+|..+ |..++.+..
T Consensus 203 ~~~~~~~~~~dvvIIGgGp-aGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 203 AEELNAKDPYDVLVVGGGP-AGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred hhhcccCCCCCEEEECCCH-HHHHHHHHHHHCCCcEEEEec
Confidence 2345899999999 999998876 888888764
No 403
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=26.71 E-value=3.6e+02 Score=23.16 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=29.6
Q ss_pred EEEEeCCchHHHHHHHHHcCCc-ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCc
Q 023578 162 RGLITRNIKEAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSL 223 (280)
Q Consensus 162 i~ivS~~~~~~~~~~l~~~g~~-fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~ 223 (280)
+.|-+-|-.......++..|+. .|.. -|.=.-.+..++++.-.-.+++.+||..
T Consensus 69 ViirAHGv~~~~~~~~~~~g~~viDaT--------CP~V~k~~~~v~~~~~~Gy~vvi~G~~~ 123 (298)
T PRK01045 69 VIFSAHGVSPAVREEAKERGLTVIDAT--------CPLVTKVHKEVARMSREGYEIILIGHKG 123 (298)
T ss_pred EEEeCCCCCHHHHHHHHHCCCeEEeCC--------CccchHHHHHHHHHHhCCCEEEEEeCCC
Confidence 3343446666666667777765 3321 2222344455555544555788888866
No 404
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=26.53 E-value=2.2e+02 Score=23.71 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=29.9
Q ss_pred HHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc
Q 023578 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~ 183 (280)
+.+.++.+.+.|..+++++.+-.+.+...+.+.|+.
T Consensus 119 l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~ 154 (261)
T cd03334 119 LKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGIT 154 (261)
T ss_pred HHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCE
Confidence 456778888889999998888888888888888876
No 405
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=26.52 E-value=34 Score=22.82 Aligned_cols=16 Identities=31% Similarity=0.254 Sum_probs=13.2
Q ss_pred cEEEEeCCCcccCCCC
Q 023578 69 RGVVFDMDGTLTVPVI 84 (280)
Q Consensus 69 k~iiFD~DGTL~d~~~ 84 (280)
-.++++-|||.+|++.
T Consensus 40 ~~lvL~eDGT~Vd~Ee 55 (79)
T cd06538 40 SSLVLDEDGTGVDTEE 55 (79)
T ss_pred cEEEEecCCcEEccHH
Confidence 4599999999997654
No 406
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=26.30 E-value=93 Score=26.74 Aligned_cols=27 Identities=4% Similarity=-0.139 Sum_probs=20.4
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKE 171 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~ 171 (280)
.|-=.++++.+|+.|.+|.+++++...
T Consensus 163 RpRH~~lI~eiR~~GarI~Li~DGDVa 189 (321)
T PRK12388 163 KPRLSAAIEEATQLGVKVFALPDGDVA 189 (321)
T ss_pred CchHHHHHHHHHHcCCeEEEeccccHH
Confidence 355566888888888888888887653
No 407
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=26.28 E-value=19 Score=22.45 Aligned_cols=44 Identities=23% Similarity=0.230 Sum_probs=26.5
Q ss_pred HHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcE
Q 023578 173 VDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEV 216 (280)
Q Consensus 173 ~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~ 216 (280)
+..+.+.+|+.-..+...+.+..+|.+..+..+++.+|+++++.
T Consensus 15 ~~~~a~~~~i~~~~i~~~e~g~~~~~~~~l~~i~~~~~v~~~~l 58 (64)
T PF12844_consen 15 QKDLAEKLGISRSTISKIENGKRKPSVSTLKKIAEALGVSLDEL 58 (64)
T ss_dssp HHHHHHHHTS-HHHHHHHHTTSS--BHHHHHHHHHHHTS-HHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCcCCCHHHHHHHHHHhCCCHHHH
Confidence 44555667765222222345566899999999999999987654
No 408
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=26.27 E-value=74 Score=24.20 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=33.6
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceee
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALS 189 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~ 189 (280)
+..++.++=+.|++.|+++.++.+.....+..+.+.+++ +.|++
T Consensus 51 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~--~~V~~ 94 (165)
T PF00875_consen 51 LLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGA--TAVYF 94 (165)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTE--SEEEE
T ss_pred HHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCc--CeeEe
Confidence 445667778888999999999999888888888888884 45554
No 409
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=26.18 E-value=1.1e+02 Score=25.75 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=23.2
Q ss_pred ccCcCH-HHHHHHhhhCCCeEEEEeCCch
Q 023578 143 QIMPGT-AQLCGFLDSKKIRRGLITRNIK 170 (280)
Q Consensus 143 ~~~pg~-~~~l~~L~~~g~~i~ivS~~~~ 170 (280)
.+.++. .++++.+++.|+.+.+.||+..
T Consensus 137 ll~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 137 LLQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred hchHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 345675 6899999999999999999853
No 410
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=26.05 E-value=1.8e+02 Score=20.95 Aligned_cols=41 Identities=7% Similarity=0.028 Sum_probs=28.1
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHc-CCccc
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRF-GITFS 185 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~-g~~fd 185 (280)
.|.+.++.+++++.|+.++.+|...........+.. +..|.
T Consensus 42 ~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~ 83 (140)
T cd02971 42 LCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFP 83 (140)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCce
Confidence 355566677777778888888877766666666766 54454
No 411
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=25.93 E-value=77 Score=25.05 Aligned_cols=29 Identities=7% Similarity=-0.091 Sum_probs=24.1
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAV 173 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~ 173 (280)
.+.+.++++.++++|.+++.+|+.....+
T Consensus 124 t~~~i~~~~~ak~~g~~iI~iT~~~~s~l 152 (192)
T PRK00414 124 SGNIIKAIEAARAKGMKVITLTGKDGGKM 152 (192)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 57788999999999999999998754433
No 412
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=25.65 E-value=62 Score=27.07 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=23.3
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKE 171 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~ 171 (280)
.+.+.++++.+|+.|+.+++.||+...
T Consensus 98 ~e~~~~~~~~ake~Gl~~~l~TnG~~~ 124 (260)
T COG1180 98 AEFALDLLRAAKERGLHVALDTNGFLP 124 (260)
T ss_pred HHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 467888999999999999999997644
No 413
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=25.52 E-value=37 Score=26.79 Aligned_cols=13 Identities=38% Similarity=0.532 Sum_probs=11.7
Q ss_pred ccEEEEeCCCccc
Q 023578 68 LRGVVFDMDGTLT 80 (280)
Q Consensus 68 ~k~iiFD~DGTL~ 80 (280)
-+.|-||+|||++
T Consensus 58 E~~v~~D~~GT~m 70 (271)
T PF06901_consen 58 EHTVTFDFQGTKM 70 (271)
T ss_pred eeeEEEeccceEE
Confidence 4789999999998
No 414
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=25.27 E-value=7.7e+02 Score=25.48 Aligned_cols=122 Identities=14% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHhhhCCCeEEEEeCCch-------------------HHHHHHHHHcCCc-ccceeeCCCCCCCC-----------
Q 023578 149 AQLCGFLDSKKIRRGLITRNIK-------------------EAVDLFHNRFGIT-FSPALSREFRPYKP----------- 197 (280)
Q Consensus 149 ~~~l~~L~~~g~~i~ivS~~~~-------------------~~~~~~l~~~g~~-fd~v~~~~~~~~Kp----------- 197 (280)
..+++.|++.|++++++..+.. +.+..++++.+++ .=..++++.+...-
T Consensus 31 ~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~ 110 (1066)
T PRK05294 31 TQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEK 110 (1066)
T ss_pred HHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHH
Q ss_pred -----------------ChHHHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCE
Q 023578 198 -----------------DPGPLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDF 260 (280)
Q Consensus 198 -----------------~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~ 260 (280)
+...+...++++|++......+.+.. .-...+...|.++|.=...+.-+ ..-+
T Consensus 111 ~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~Gipvp~~~~v~s~~-e~~~~~~~ig~PvVVKP~~g~gg---------~Gv~ 180 (1066)
T PRK05294 111 YGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHSME-EALEVAEEIGYPVIIRPSFTLGG---------TGGG 180 (1066)
T ss_pred CCCEEECCCHHHHHHhcCHHHHHHHHHHCCcCCCCeeeeCCHH-HHHHHHHHcCCCeEEEcCCCCCC---------CCeE
Q ss_pred EEcCHHHHHHHHHhccCCCC
Q 023578 261 RVSSLTEVLSILEANFDLIP 280 (280)
Q Consensus 261 v~~~~~dl~~~l~~~~~~~~ 280 (280)
++.+..||.+.+...+..++
T Consensus 181 iv~~~eeL~~a~~~~~~~s~ 200 (1066)
T PRK05294 181 IAYNEEELEEIVERGLDLSP 200 (1066)
T ss_pred EECCHHHHHHHHHHHHhhCC
No 415
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=25.14 E-value=1.3e+02 Score=25.98 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=36.7
Q ss_pred EEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhcc
Q 023578 216 VMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANF 276 (280)
Q Consensus 216 ~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~ 276 (280)
++.=|=-...|..-|-++|+..|.|++ +|.. +-|++..+++-|.++++...
T Consensus 226 IvvKGilt~eDA~~Ave~G~~GIIVSN---HGgR-------QlD~vpAtI~~L~Evv~aV~ 276 (363)
T KOG0538|consen 226 IVVKGVLTGEDARKAVEAGVAGIIVSN---HGGR-------QLDYVPATIEALPEVVKAVE 276 (363)
T ss_pred eEEEeecccHHHHHHHHhCCceEEEeC---CCcc-------ccCcccchHHHHHHHHHHhc
Confidence 343343333688899999999999995 5543 66778888888888887653
No 416
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=25.05 E-value=4e+02 Score=22.07 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=59.8
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHH------HHcCCc-ccceeeCCCCCCCCChHHHHHHHHhcCCCCCc-E
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFH------NRFGIT-FSPALSREFRPYKPDPGPLLHICSTWEVQPNE-V 216 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l------~~~g~~-fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~-~ 216 (280)
.++-..+++.++..|+.+-==|.+.+..-+.+. +.++-+ ...-+-++...-.|++....++++++=-+-=. .
T Consensus 55 ~~~~~~~l~~l~~~~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~Vl 134 (262)
T COG2022 55 RPGGDGILDLLIPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVL 134 (262)
T ss_pred CCCcchHHHHhhhcCcEeCCCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEe
Confidence 455556777778776655444545443333222 233333 23234456666789998888999887322222 3
Q ss_pred EEEcCCchhhHHHHHHcCCcEEE
Q 023578 217 MMVGDSLKDDVACGKRAGAFTCL 239 (280)
Q Consensus 217 v~iGDs~~~Di~~a~~~G~~~i~ 239 (280)
-|..|++ .-.+-...+|+.+++
T Consensus 135 PY~~dD~-v~arrLee~GcaavM 156 (262)
T COG2022 135 PYTTDDP-VLARRLEEAGCAAVM 156 (262)
T ss_pred eccCCCH-HHHHHHHhcCceEec
Confidence 4889999 999999999998887
No 417
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=24.95 E-value=2.9e+02 Score=20.49 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=18.5
Q ss_pred HHHHHHhcCCCCCcEEEEcCC---chhhHH----HHHHcCCcEEE
Q 023578 202 LLHICSTWEVQPNEVMMVGDS---LKDDVA----CGKRAGAFTCL 239 (280)
Q Consensus 202 ~~~~~~~lgi~~~~~v~iGDs---~~~Di~----~a~~~G~~~i~ 239 (280)
+...+++.|+. .-.+++|=. +..|.. .++++|+..++
T Consensus 72 ~~~~l~~~gl~-~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF 115 (134)
T TIGR01501 72 LRQKCDEAGLE-GILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVF 115 (134)
T ss_pred HHHHHHHCCCC-CCEEEecCCcCcChhhhHHHHHHHHHcCCCEEE
Confidence 33445555553 234566663 114443 36777765554
No 418
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=24.81 E-value=1.6e+02 Score=29.52 Aligned_cols=119 Identities=16% Similarity=0.068 Sum_probs=69.7
Q ss_pred CcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc-cccee-eCCCC--------CCCCChHHHHHHHHhcC
Q 023578 141 RLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-FSPAL-SREFR--------PYKPDPGPLLHICSTWE 210 (280)
Q Consensus 141 ~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-fd~v~-~~~~~--------~~Kp~~~~~~~~~~~lg 210 (280)
...+-|....+++...++|+++..+.+++- =.+|.. ...++ ++... ... +-.....++++.|
T Consensus 154 ~~~~g~st~~i~~~a~~rgip~~~l~~~~~-------~qlg~g~~~~~~~~~~t~~~s~ia~~ia~-DK~~tk~lL~~~G 225 (864)
T TIGR02068 154 DASLGPSTAAIVDEAEKRGIPYMRLSAGSL-------VQLGYGSRQKRIQATETDRTSAIAVEIAC-DKDLTKEILSDAG 225 (864)
T ss_pred hccCCCcHHHHHHHHHHCCCCEEEECCCCE-------EEecCCCEEEEEEeecCCCCcHHHHHHHc-CHHHHHHHHHHcC
Confidence 445678888899999999999988865321 123333 11111 11100 111 2246678899999
Q ss_pred CCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhcc
Q 023578 211 VQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANF 276 (280)
Q Consensus 211 i~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~ 276 (280)
++..+...+.+.. .-.+.+...|.+.+.=...+..+ .+...-+.+..++.+.++..+
T Consensus 226 IpvP~~~~~~s~~-ea~~~~~~ig~PvVVKP~~g~~G--------~GV~l~v~s~~el~~a~~~a~ 282 (864)
T TIGR02068 226 VPVPEGTVVQSAE-DAWEAAQDLGYPVVIKPYDGNHG--------RGVTINILTRDEIESAYEAAV 282 (864)
T ss_pred cCCCCEEEECCHH-HHHHHHHHcCCCEEEEECCCCCc--------cCEEEEeCCHHHHHHHHHHHH
Confidence 9877777776544 44566778888766543322211 122222788888888776543
No 419
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=24.62 E-value=4.2e+02 Score=24.55 Aligned_cols=98 Identities=21% Similarity=0.216 Sum_probs=55.8
Q ss_pred CCcccCcCHHHHHHHhhhC--CCeEEEEeCCchHHHHHHHHHcCCc-ccc-eeeCC-CCCCCCChHHH-HHHHHh-----
Q 023578 140 DRLQIMPGTAQLCGFLDSK--KIRRGLITRNIKEAVDLFHNRFGIT-FSP-ALSRE-FRPYKPDPGPL-LHICST----- 208 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~--g~~i~ivS~~~~~~~~~~l~~~g~~-fd~-v~~~~-~~~~Kp~~~~~-~~~~~~----- 208 (280)
..++..|.+...++.+... .+..-.+ +. .......+++++. ... ++.++ ...+++..+.+ +.+.+.
T Consensus 127 ~~Cp~Cp~~v~~~~~~a~~~p~i~~~~i-d~--~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~ 203 (515)
T TIGR03140 127 LTCQNCPDVVQALNQMALLNPNISHTMI-DG--ALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEA 203 (515)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCceEEEE-Ec--hhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCccc
Confidence 3456677888888777765 2322221 11 2233455677766 322 33333 23344433333 333322
Q ss_pred ----cCCCCCcEEEEcCCchhhHHHHHHc---CCcEEEEc
Q 023578 209 ----WEVQPNEVMMVGDSLKDDVACGKRA---GAFTCLLD 241 (280)
Q Consensus 209 ----lgi~~~~~v~iGDs~~~Di~~a~~~---G~~~i~v~ 241 (280)
-...+.+++.||-++ ..+.+|..+ |..++.+.
T Consensus 204 ~~~~~~~~~~dVvIIGgGp-AGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 204 ASALEQLDPYDVLVVGGGP-AGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred chhccccCCCCEEEECCCH-HHHHHHHHHHHCCCcEEEEe
Confidence 123456899999999 999998876 77887775
No 420
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=24.58 E-value=1e+02 Score=19.29 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=20.1
Q ss_pred CHHHHHHHhhhCCCeEEEEeCCc
Q 023578 147 GTAQLCGFLDSKKIRRGLITRNI 169 (280)
Q Consensus 147 g~~~~l~~L~~~g~~i~ivS~~~ 169 (280)
...+++++++++|++.+.+|+..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCC
Confidence 36789999999999999999854
No 421
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=24.55 E-value=1.2e+02 Score=26.04 Aligned_cols=79 Identities=18% Similarity=0.117 Sum_probs=46.3
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHH-HHHHcCCc--------ccceee--------CC-CCCCCCChHHHHHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDL-FHNRFGIT--------FSPALS--------RE-FRPYKPDPGPLLHIC 206 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~-~l~~~g~~--------fd~v~~--------~~-~~~~Kp~~~~~~~~~ 206 (280)
.|-=.++++.+|+.|.++.+++++...-.-. .+...|++ .++|++ ++ .+.-.|..+--..-+
T Consensus 163 RpRH~~lI~eiR~~Gari~Li~DGDV~~ai~~~~~~s~vD~~~GiGGaPEGVlaAaAlkclGG~~qgrL~~~~~~e~~r~ 242 (309)
T cd01516 163 RPRHAALIEEIREAGARIKLIPDGDVAAAIATALPGSGVDVLMGIGGAPEGVLAAAALKCLGGEMQGRLLPRNEEERARA 242 (309)
T ss_pred CchHHHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEEECCCChHHHHHHHHHHhCCceeEEEECCCCHHHHHHH
Confidence 4566779999999999999999987543322 22333332 222221 12 122334445556667
Q ss_pred HhcCC-CCCcEEEEcCCc
Q 023578 207 STWEV-QPNEVMMVGDSL 223 (280)
Q Consensus 207 ~~lgi-~~~~~v~iGDs~ 223 (280)
.++|+ ++++++..+|=.
T Consensus 243 ~~~Gi~D~~ki~~~ddLv 260 (309)
T cd01516 243 REMGITDPNKILTLDDLV 260 (309)
T ss_pred HHcCCCChhheeEHHHcc
Confidence 77777 667776665554
No 422
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=24.52 E-value=53 Score=28.30 Aligned_cols=90 Identities=17% Similarity=0.271 Sum_probs=48.9
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCCchHHHHH---------HHHHcCCc---ccceeeCCCCCCCCChHHHHHHHHhcCCCC
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDL---------FHNRFGIT---FSPALSREFRPYKPDPGPLLHICSTWEVQP 213 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~---------~l~~~g~~---fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~ 213 (280)
|=+..+.+.|+++|++++|+|-+.....+. -.+..|-+ ...-....+..++...+..+.++++++
T Consensus 45 P~v~~La~~l~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR~~a~~~~~~~~~--- 121 (311)
T TIGR00682 45 PVVVWLAELLKDRGLRVGVLSRGYGSKTKKYTLVGSKKHTASEVGDEPVLLAKYLHATVVASKDRKDAILLILEQLD--- 121 (311)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCeeeeCCCCChHHcCcHHHHhhhhcCCcEEEeChHHHHHHHHHhcCC---
Confidence 556778899999999999999543321100 01112211 000000011122233345556666554
Q ss_pred CcEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 214 NEVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 214 ~~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
.+++..+|+. ......+..-+ +.++
T Consensus 122 ~dviilDDGf-Qh~~l~rD~~I--vlvD 146 (311)
T TIGR00682 122 PDVIILDDGL-QHRKLHRDVEI--VVVD 146 (311)
T ss_pred CCEEEECCCC-cCccccCCeEE--EEEC
Confidence 4699999999 88877766554 4444
No 423
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=24.51 E-value=3.8e+02 Score=21.93 Aligned_cols=49 Identities=12% Similarity=0.090 Sum_probs=36.4
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCC
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRP 194 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~ 194 (280)
.+.+.+.+++|++.|++|-+..+.....++. ....|.++-.++++-...
T Consensus 110 ~~~l~~~v~~L~~~GirVSLFiD~d~~qi~a-a~~~gA~~IELhTG~Ya~ 158 (243)
T COG0854 110 LDKLRDAVRRLKNAGIRVSLFIDPDPEQIEA-AAEVGAPRIELHTGPYAD 158 (243)
T ss_pred hhhHHHHHHHHHhCCCeEEEEeCCCHHHHHH-HHHhCCCEEEEecccccc
Confidence 4678889999999999999999987766554 456687755556655443
No 424
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=24.43 E-value=76 Score=26.19 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=33.8
Q ss_pred CCChHH----HHHHHHhcCCCCC--cEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 196 KPDPGP----LLHICSTWEVQPN--EVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 196 Kp~~~~----~~~~~~~lgi~~~--~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
||.|+- |..-++.+|++|. ++-||.|+.++--..|.-.|+- ||++
T Consensus 86 KPsP~NiQeLYL~SL~~lGid~~~HDIRFVEDnWE~PTlGawGlGWE-VWld 136 (298)
T COG0752 86 KPSPDNIQELYLGSLEALGIDPLEHDIRFVEDNWENPTLGAWGLGWE-VWLD 136 (298)
T ss_pred cCCCccHHHHHHHHHHHcCCChhhcceeeeccCCCCCccccccccee-EEEc
Confidence 777764 5566889999875 6889999997777777777764 4544
No 425
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=24.37 E-value=1.1e+02 Score=22.21 Aligned_cols=27 Identities=7% Similarity=0.041 Sum_probs=23.7
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCc
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNI 169 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~ 169 (280)
..+|.+.+++++++++|++++++.-+.
T Consensus 59 ~~~~~l~~~~~~a~e~GVk~yvCe~s~ 85 (120)
T COG2044 59 PNFPPLEELIKQAIEAGVKIYVCEQSL 85 (120)
T ss_pred CCCCCHHHHHHHHHHcCCEEEEEcchh
Confidence 456999999999999999999998654
No 426
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=24.26 E-value=2.9e+02 Score=23.79 Aligned_cols=73 Identities=7% Similarity=0.008 Sum_probs=43.2
Q ss_pred HHHHHHhhhCC--CeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCc--EEEEcCCc
Q 023578 149 AQLCGFLDSKK--IRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNE--VMMVGDSL 223 (280)
Q Consensus 149 ~~~l~~L~~~g--~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~--~v~iGDs~ 223 (280)
.+.+..+++.+ -.+.++||-..-......+..|++-..+++.-.. -.....-..+.+++|+++++ .+++|.+.
T Consensus 103 ~~i~~~i~~~~~~~~vivvsNP~d~~~~~~~k~sg~p~~~viG~gt~--LDs~R~~~~la~~l~v~~~~V~~~viGeHG 179 (315)
T PRK00066 103 KSIVGEVMASGFDGIFLVASNPVDILTYATWKLSGFPKERVIGSGTS--LDSARFRYMLSEKLDVDPRSVHAYIIGEHG 179 (315)
T ss_pred HHHHHHHHHhCCCeEEEEccCcHHHHHHHHHHHhCCCHHHEeecCch--HHHHHHHHHHHHHhCCCcccEEEEEEecCC
Confidence 34456666543 3577778766555566666667664445542111 11224556677889998875 55778865
No 427
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=24.06 E-value=1.3e+02 Score=25.82 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=23.2
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEA 172 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~ 172 (280)
.|-=.++++++|+.|.++.+++++....
T Consensus 166 RpRH~~lI~eiR~~Gari~Li~DGDVa~ 193 (319)
T PRK09479 166 RPRHEELIAEIREAGARVKLISDGDVAG 193 (319)
T ss_pred CchHHHHHHHHHHcCCeEEEeccccHHH
Confidence 4556779999999999999999987643
No 428
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=24.02 E-value=3.3e+02 Score=21.69 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=46.2
Q ss_pred HHHHHHHhcCCCCCcEEEEcCCchhhHHHHHHcCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhccC
Q 023578 201 PLLHICSTWEVQPNEVMMVGDSLKDDVACGKRAGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANFD 277 (280)
Q Consensus 201 ~~~~~~~~lgi~~~~~v~iGDs~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~~ 277 (280)
.-+..++++|++-.+...+.|-. .-.+..++.+...+.|...|-. ..+--.|+.+..|..+.+.+++.
T Consensus 5 faK~fm~~~~IPTa~~~~f~~~~-~A~~~l~~~~~p~~ViKadGla--------~GKGV~i~~~~~eA~~~l~~~~~ 72 (194)
T PF01071_consen 5 FAKEFMKRYGIPTAKYKVFTDYE-EALEYLEEQGYPYVVIKADGLA--------AGKGVVIADDREEALEALREIFV 72 (194)
T ss_dssp HHHHHHHHTT-SB--EEEESSHH-HHHHHHHHHSSSEEEEEESSSC--------TTTSEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCeeEECCHH-HHHHHHHhcCCCceEEccCCCC--------CCCEEEEeCCHHHHHHHHHHhcc
Confidence 45678999999888888888766 6677778888877344321111 23556788999999999988764
No 429
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=23.92 E-value=4.9e+02 Score=22.71 Aligned_cols=93 Identities=9% Similarity=0.055 Sum_probs=59.7
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHH--HHHHhcC--CCCCcEEEEcC
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLL--HICSTWE--VQPNEVMMVGD 221 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~--~~~~~lg--i~~~~~v~iGD 221 (280)
+-+.+..+.|... ..++++-......++.+.+..+++ |+.+......|...... .+.+++| ++.-.+.+|||
T Consensus 89 Esl~DTarvls~y-~D~iv~R~~~~~~~~~~a~~~~vP---VINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD 164 (334)
T PRK01713 89 ESMKDTARVLGRM-YDAIEYRGFKQSIVNELAEYAGVP---VFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGD 164 (334)
T ss_pred cCHHHHHHHHHHh-CCEEEEEcCchHHHHHHHHhCCCC---EEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECC
Confidence 5566677777776 667777766667777777776653 44433334566544433 3455565 56678999999
Q ss_pred Cc----hhhHHHHHHcCCcEEEEcC
Q 023578 222 SL----KDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 222 s~----~~Di~~a~~~G~~~i~v~~ 242 (280)
.. .+.+.++...|+.+..+..
T Consensus 165 ~~~~v~~Sl~~~~~~~g~~v~~~~P 189 (334)
T PRK01713 165 ARNNMGNSLLLIGAKLGMDVRICAP 189 (334)
T ss_pred CccCHHHHHHHHHHHcCCEEEEECC
Confidence 72 2367777788997776653
No 430
>PF08889 WbqC: WbqC-like protein family; InterPro: IPR014985 This family of proteins are functionally uncharacterised. However, it is found in an O-antigen gene cluster in Escherichia coli [] and other bacteria [] suggesting a role in O-antigen production. It has been suggested that wbnG may code for a glycine transferase [].
Probab=23.81 E-value=2e+02 Score=23.33 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=65.1
Q ss_pred CCcccCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCC-CCCChHHHHHHHHhcCCCCCcEEE
Q 023578 140 DRLQIMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRP-YKPDPGPLLHICSTWEVQPNEVMM 218 (280)
Q Consensus 140 ~~~~~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~-~Kp~~~~~~~~~~~lgi~~~~~v~ 218 (280)
...+.++...+.++.+-++ +..-++.-+...++.+++.+|+....+.+++... .-.+.+-+..+|+++|.+ ...
T Consensus 85 ~kaP~f~~~~~~ie~~~~~--~~~~L~dln~~~l~~i~~~Lgi~~~i~~sS~l~~~~~~~~~~vi~i~~~~ga~---~Yi 159 (219)
T PF08889_consen 85 RKAPYFEEYEPLIEPLYEK--PYDNLADLNEASLEWICDYLGIDTPIVRSSELNLPEGKKSERVIDICKALGAD---TYI 159 (219)
T ss_pred hcCCCHHHHHHHHHHHHhC--CcccHHHHHHHHHHHHHHHhCCCCeEEeccccccCCCCchHHHHHHHHHcCCC---eee
Confidence 3445566777777777664 4445566667778889999999866666776443 334456778899999864 222
Q ss_pred E---cCCchhhHHHHHHcCCcEEEEc
Q 023578 219 V---GDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 219 i---GDs~~~Di~~a~~~G~~~i~v~ 241 (280)
- |=.. -|-+...+.|+..-+..
T Consensus 160 ~~~gg~~y-~d~~~F~~~gi~l~f~~ 184 (219)
T PF08889_consen 160 NGPGGRDY-YDPEEFEENGIELEFQE 184 (219)
T ss_pred cCccchhc-cCHHHHHhcCCceeeec
Confidence 2 2233 57788899999887765
No 431
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=23.68 E-value=1.4e+02 Score=24.74 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=33.2
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~ 183 (280)
..||-...-+.|++.|++++++|+++..-.+..++..|+.
T Consensus 72 a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~G 111 (277)
T PRK00994 72 AAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLG 111 (277)
T ss_pred CCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCc
Confidence 3577777888889999999999998887777788877765
No 432
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=23.68 E-value=2.1e+02 Score=20.81 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=26.4
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCccc
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFS 185 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd 185 (280)
|.+.++.+.+++.|+.++.++...........+..++.|.
T Consensus 44 ~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p 83 (149)
T cd02970 44 RALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFP 83 (149)
T ss_pred HHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCe
Confidence 4445566666777888888887666655556666666544
No 433
>PRK13938 phosphoheptose isomerase; Provisional
Probab=23.68 E-value=87 Score=24.94 Aligned_cols=29 Identities=3% Similarity=-0.139 Sum_probs=24.0
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAV 173 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~ 173 (280)
.+.+.+.++.++++|.+++.+|+.....+
T Consensus 126 t~~vi~a~~~Ak~~G~~vI~iT~~~~s~L 154 (196)
T PRK13938 126 SMSVLRAAKTARELGVTVVAMTGESGGQL 154 (196)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCCCChh
Confidence 56788999999999999999998665433
No 434
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=23.68 E-value=3.5e+02 Score=21.86 Aligned_cols=75 Identities=11% Similarity=0.013 Sum_probs=44.2
Q ss_pred CCeEEEEeCCchHHHHH--HHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEE---cCCchhhHHHHHHc
Q 023578 159 KIRRGLITRNIKEAVDL--FHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMV---GDSLKDDVACGKRA 233 (280)
Q Consensus 159 g~~i~ivS~~~~~~~~~--~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~i---GDs~~~Di~~a~~~ 233 (280)
|.++++++.|+.-+..- .+.+. |. .+.-.--|.+..++.++.++|++.+++.++ |... +++.....-
T Consensus 68 g~~v~VLasGDP~f~G~g~~l~~~---~~----~~~v~iIPgiSS~q~a~ARlg~~~~~~~~islHgr~~-~~l~~~~~~ 139 (210)
T COG2241 68 GRDVVVLASGDPLFSGVGRLLRRK---FS----CEEVEIIPGISSVQLAAARLGWPLQDTEVISLHGRPV-ELLRPLLEN 139 (210)
T ss_pred CCCeEEEecCCcchhhhHHHHHHh---cC----ccceEEecChhHHHHHHHHhCCChHHeEEEEecCCCH-HHHHHHHhC
Confidence 78888888877655421 11111 11 111112466788999999999988776554 3444 566656555
Q ss_pred CCcEEEEc
Q 023578 234 GAFTCLLD 241 (280)
Q Consensus 234 G~~~i~v~ 241 (280)
|-..+...
T Consensus 140 ~~~~vil~ 147 (210)
T COG2241 140 GRRLVILT 147 (210)
T ss_pred CceEEEeC
Confidence 55555554
No 435
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.58 E-value=91 Score=20.79 Aligned_cols=22 Identities=18% Similarity=-0.011 Sum_probs=18.9
Q ss_pred HHHHHHHhhhCCCeEEEEeCCc
Q 023578 148 TAQLCGFLDSKKIRRGLITRNI 169 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~ 169 (280)
..++++.|+++|+++..+|++.
T Consensus 55 ~~~i~~~L~~~G~~~~~~~~~~ 76 (85)
T cd04906 55 LAELLEDLKSAGYEVVDLSDDE 76 (85)
T ss_pred HHHHHHHHHHCCCCeEECCCCH
Confidence 7788999999999998888764
No 436
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=23.32 E-value=5.6e+02 Score=23.17 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=33.0
Q ss_pred CeEEEEeCCchHHHHHHHHHcCCc---ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEc
Q 023578 160 IRRGLITRNIKEAVDLFHNRFGIT---FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (280)
Q Consensus 160 ~~i~ivS~~~~~~~~~~l~~~g~~---fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iG 220 (280)
-+|+|+|+.....+..+++.+.-. +...+......+.-.+.-+-.+++.++-..-+++.|+
T Consensus 136 ~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~ 199 (438)
T PRK00286 136 KRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVA 199 (438)
T ss_pred CEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEe
Confidence 479999997777666666544322 2222222222333344555566666554224677774
No 437
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=23.28 E-value=4.7e+02 Score=22.32 Aligned_cols=93 Identities=12% Similarity=0.040 Sum_probs=52.9
Q ss_pred HHHHHHhhhCCCeEEEEeCCchHHHH-----HHHHHcCCc---ccceeeC-C------CCCCCCChHHHHHHHHhcCCCC
Q 023578 149 AQLCGFLDSKKIRRGLITRNIKEAVD-----LFHNRFGIT---FSPALSR-E------FRPYKPDPGPLLHICSTWEVQP 213 (280)
Q Consensus 149 ~~~l~~L~~~g~~i~ivS~~~~~~~~-----~~l~~~g~~---fd~v~~~-~------~~~~Kp~~~~~~~~~~~lgi~~ 213 (280)
..+.+.+++ |-+++++-.|...... .....+|.. +..++.+ + ......+.......++..++.+
T Consensus 53 ~~~~~~l~~-ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~~~~~~l~~~~l~~ 131 (299)
T PRK05441 53 DAAAAALRQ-GGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELGAADLKAINLTA 131 (299)
T ss_pred HHHHHHHHC-CCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHHHHHHHHHhcCCCC
Confidence 334555554 5678888877665433 233455655 3333332 1 1123344555566777777877
Q ss_pred CcEEEEc-C---Cc--hhhHHHHHHcCCcEEEEcC
Q 023578 214 NEVMMVG-D---SL--KDDVACGKRAGAFTCLLDE 242 (280)
Q Consensus 214 ~~~v~iG-D---s~--~~Di~~a~~~G~~~i~v~~ 242 (280)
++++++= - ++ ..-++.|++.|+.++.+..
T Consensus 132 ~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~ 166 (299)
T PRK05441 132 KDVVVGIAASGRTPYVIGALEYARERGALTIGISC 166 (299)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEEC
Confidence 7765432 2 22 1235677778999999985
No 438
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=23.26 E-value=5.1e+02 Score=22.65 Aligned_cols=106 Identities=11% Similarity=0.146 Sum_probs=60.7
Q ss_pred HHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhH
Q 023578 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDV 227 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di 227 (280)
..++++.|++.|..+++++..... ....+.+++. +-. +| -+.. .++-. --++|||+. +=.
T Consensus 201 ~~~ii~~L~~~~~~vV~ipr~~~~--~~~~~~~~~~----i~~-----~~-vd~~-~Ll~~------a~l~Ig~gg-TMa 260 (335)
T PF04007_consen 201 LPEIIEELEKYGRNVVIIPRYEDQ--RELFEKYGVI----IPP-----EP-VDGL-DLLYY------ADLVIGGGG-TMA 260 (335)
T ss_pred HHHHHHHHHhhCceEEEecCCcch--hhHHhccCcc----ccC-----CC-CCHH-HHHHh------cCEEEeCCc-HHH
Confidence 457889999998777777654432 2334444321 000 11 0111 12211 247999999 766
Q ss_pred HHHHHcCCcEEEEcCCCCCC-ccccccCCCCCCEEEcCHHHHHHHHHhc
Q 023578 228 ACGKRAGAFTCLLDETGRYS-ADDFTKSNLQPDFRVSSLTEVLSILEAN 275 (280)
Q Consensus 228 ~~a~~~G~~~i~v~~~~~~~-~~~~~~~~~~~d~v~~~~~dl~~~l~~~ 275 (280)
.-|.-.|.++|-+.. +... ..+.. .+.+.-+...+..++.+.+.+.
T Consensus 261 ~EAA~LGtPaIs~~~-g~~~~vd~~L-~~~Gll~~~~~~~ei~~~v~~~ 307 (335)
T PF04007_consen 261 REAALLGTPAISCFP-GKLLAVDKYL-IEKGLLYHSTDPDEIVEYVRKN 307 (335)
T ss_pred HHHHHhCCCEEEecC-CcchhHHHHH-HHCCCeEecCCHHHHHHHHHHh
Confidence 666688999998753 2222 22222 2456777788889888877543
No 439
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=22.94 E-value=65 Score=27.01 Aligned_cols=73 Identities=7% Similarity=-0.111 Sum_probs=39.3
Q ss_pred CHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc-----ccceee-CCCCCCCCChHHHHHHHHhcCCCCCcEEEEc
Q 023578 147 GTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT-----FSPALS-REFRPYKPDPGPLLHICSTWEVQPNEVMMVG 220 (280)
Q Consensus 147 g~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~-----fd~v~~-~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iG 220 (280)
.+.+.+..++++|+++++||++........+...+.. .+.+.+ ++. --...|..++.++|+...+++.-.
T Consensus 35 ~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~~~~~~~~~~a~aa~Gq~----~l~~~~~~~~~~~g~~~~q~llT~ 110 (266)
T PRK12314 35 QLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDKRPTSLAEKQALAAVGQP----ELMSLYSKFFAEYGIVVAQILLTR 110 (266)
T ss_pred HHHHHHHHHHHCCCeEEEEeeCcccccceeeccccCCCCHHHHHHHHHHhHH----HHHHHHHHHHHHcCCeEEEEEEec
Confidence 3455677888899999998765333222222111110 111111 110 012466777888888887877666
Q ss_pred CCc
Q 023578 221 DSL 223 (280)
Q Consensus 221 Ds~ 223 (280)
|..
T Consensus 111 ~~~ 113 (266)
T PRK12314 111 DDF 113 (266)
T ss_pred ccc
Confidence 654
No 440
>PF11181 YflT: Heat induced stress protein YflT
Probab=22.74 E-value=1.5e+02 Score=20.68 Aligned_cols=65 Identities=5% Similarity=0.053 Sum_probs=37.5
Q ss_pred cCHHHHHHHhhhCCCe---EEEEeCCchHHHHHHHHHcCCc---------ccceeeCCCCCCCCChHHHHHHHHhcCCCC
Q 023578 146 PGTAQLCGFLDSKKIR---RGLITRNIKEAVDLFHNRFGIT---------FSPALSREFRPYKPDPGPLLHICSTWEVQP 213 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~---i~ivS~~~~~~~~~~l~~~g~~---------fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~ 213 (280)
..+...++.|+.+||. ++|+|... ...+.+.+..+.. ++.+- ..-....+.....+..+|++.
T Consensus 10 ~E~~~~I~~L~~~Gy~~ddI~Vva~d~-~~~~~l~~~t~~~~~~~~~~~~~d~~~----~~f~~~~d~~~~~l~~lGl~~ 84 (103)
T PF11181_consen 10 EEALSAIEELKAQGYSEDDIYVVAKDK-DRTERLADQTDTNTVGASEESFWDKIK----NFFTSGGDELRSKLESLGLSE 84 (103)
T ss_pred HHHHHHHHHHHHcCCCcccEEEEEcCc-hHHHHHHHhcCCceeccccccHHHHHH----HhccCCcHHHHHHHHHcCCCH
Confidence 3567789999999985 99999543 3344444444332 11110 011123356677788888765
Q ss_pred Cc
Q 023578 214 NE 215 (280)
Q Consensus 214 ~~ 215 (280)
++
T Consensus 85 ~e 86 (103)
T PF11181_consen 85 DE 86 (103)
T ss_pred HH
Confidence 44
No 441
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=22.68 E-value=33 Score=22.53 Aligned_cols=10 Identities=50% Similarity=0.919 Sum_probs=8.6
Q ss_pred EEEeCCCccc
Q 023578 71 VVFDMDGTLT 80 (280)
Q Consensus 71 iiFD~DGTL~ 80 (280)
+=||++|.++
T Consensus 3 ~RFdf~G~l~ 12 (73)
T PF08620_consen 3 LRFDFDGNLL 12 (73)
T ss_pred ccccCCCCEe
Confidence 3499999999
No 442
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=22.63 E-value=2.2e+02 Score=24.30 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=28.9
Q ss_pred HHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceee
Q 023578 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALS 189 (280)
Q Consensus 149 ~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~ 189 (280)
.++++.++++|+++.+-|=+....++.+++ +|+ |++++
T Consensus 251 ~~~v~~~~~~G~~v~vWTVNd~~~~~~l~~-~GV--dgIiT 288 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVLNDEEEFERAFE-LGA--DGVMT 288 (300)
T ss_pred HHHHHHHHHCCCEEEEeecCCHHHHHHHHh-cCC--CEEEe
Confidence 578899999999999999777666665554 675 66655
No 443
>PRK12415 fructose 1,6-bisphosphatase II; Reviewed
Probab=22.45 E-value=1.2e+02 Score=26.17 Aligned_cols=79 Identities=16% Similarity=0.107 Sum_probs=48.2
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHH-HHHHcCCc--------ccceee--------CC-CCCCCCChHHHHHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDL-FHNRFGIT--------FSPALS--------RE-FRPYKPDPGPLLHIC 206 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~-~l~~~g~~--------fd~v~~--------~~-~~~~Kp~~~~~~~~~ 206 (280)
.|-=.++++.+|+.|.+|-+++++...-.-. .+..-|++ .++|++ ++ .+.-.|..+--..-+
T Consensus 164 RpRH~~lI~eir~~Gari~Li~DGDV~~ai~~~~~~~~vD~~~GiGGaPEGVlaAaAlkclGG~~q~rL~~~~~~e~~r~ 243 (322)
T PRK12415 164 RERHQDIIDRVRAKGARVKLFGDGDVGASIATALPGTGIDLFVGIGGAPEGVISAAALKCLGGEMQARLVPMNEEEEARC 243 (322)
T ss_pred CchHHHHHHHHHHcCCeEEEeccccHHHHHHHhCCCCCeeEEEEcCCChHHHHHHHHHHhCCceeEEEECCCCHHHHHHH
Confidence 4666779999999999999999987533221 22333332 222221 12 123345556666777
Q ss_pred HhcCC-CCCcEEEEcCCc
Q 023578 207 STWEV-QPNEVMMVGDSL 223 (280)
Q Consensus 207 ~~lgi-~~~~~v~iGDs~ 223 (280)
.++|+ ++++++..+|=.
T Consensus 244 ~~~Gi~D~~~v~~~ddlv 261 (322)
T PRK12415 244 REMGLEDPRQLLMLDDLV 261 (322)
T ss_pred HHcCCcChhheeEHHHcc
Confidence 88888 777777666554
No 444
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=22.41 E-value=56 Score=23.68 Aligned_cols=53 Identities=13% Similarity=0.062 Sum_probs=34.9
Q ss_pred HHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhH
Q 023578 174 DLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDV 227 (280)
Q Consensus 174 ~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di 227 (280)
+.+.+..|+.-..+...+.+...|+.+.+..+++.+|++++..+--.|.. .+.
T Consensus 22 ~eLA~~~Gis~~~is~iE~g~~~ps~~~l~kIa~aL~v~~~~L~~~~~~~-~~~ 74 (120)
T PRK13890 22 KELSERSGVSISFLSDLTTGKANPSLKVMEAIADALETPLPLLLESTDLD-KEA 74 (120)
T ss_pred HHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHhccCccC-HHH
Confidence 44555666653323233455568999999999999999988775444444 444
No 445
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=22.33 E-value=2.8e+02 Score=23.96 Aligned_cols=71 Identities=10% Similarity=0.055 Sum_probs=41.5
Q ss_pred HHHHHhhhCC---CeEEEEeCCchHHHHHH-HHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcE---EEEcCC
Q 023578 150 QLCGFLDSKK---IRRGLITRNIKEAVDLF-HNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEV---MMVGDS 222 (280)
Q Consensus 150 ~~l~~L~~~g---~~i~ivS~~~~~~~~~~-l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~---v~iGDs 222 (280)
++...+++.+ ..+.++||--.-..... .+..|++-. +++.-.. -...++-..+.+++|++|+++ +++|..
T Consensus 91 ~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~~~~sg~p~~-vig~gt~--LDsaR~r~~la~~l~v~~~~V~~~~V~GeH 167 (313)
T TIGR01756 91 ATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHAPKLSAE-NFSSLCM--LDHNRAVSRIASKLKVPVDHIYHVVVWGNH 167 (313)
T ss_pred HHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHH-HEEeccc--HHHHHHHHHHHHHhCcChhheeeeEEEECC
Confidence 3445555554 45667775443333333 355677644 5553211 123456678889999999987 467876
Q ss_pred c
Q 023578 223 L 223 (280)
Q Consensus 223 ~ 223 (280)
-
T Consensus 168 G 168 (313)
T TIGR01756 168 A 168 (313)
T ss_pred C
Confidence 6
No 446
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=22.25 E-value=3.3e+02 Score=20.07 Aligned_cols=13 Identities=15% Similarity=-0.131 Sum_probs=6.8
Q ss_pred HHHHHHcCCcEEE
Q 023578 227 VACGKRAGAFTCL 239 (280)
Q Consensus 227 i~~a~~~G~~~i~ 239 (280)
...++++|+..++
T Consensus 101 ~~~L~~~Gv~~vf 113 (128)
T cd02072 101 EKRFKEMGFDRVF 113 (128)
T ss_pred HHHHHHcCCCEEE
Confidence 3446666665443
No 447
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=22.21 E-value=3.6e+02 Score=24.28 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=30.7
Q ss_pred ChHHHHHHHHhcCCCCCcEEEE------------------cCCchhhHHHHHHcCCcEEEE
Q 023578 198 DPGPLLHICSTWEVQPNEVMMV------------------GDSLKDDVACGKRAGAFTCLL 240 (280)
Q Consensus 198 ~~~~~~~~~~~lgi~~~~~v~i------------------GDs~~~Di~~a~~~G~~~i~v 240 (280)
+.+-+..+++.+|+++.-+.-. |.+. .|++.+.++.+..+..
T Consensus 170 d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~-e~i~~~~~A~lniv~~ 229 (428)
T cd01965 170 DVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTL-EEIRDAGNAKATIALG 229 (428)
T ss_pred CHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcH-HHHHHhccCcEEEEEC
Confidence 5678889999999876644433 4566 8888888888865553
No 448
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=22.19 E-value=4.9e+02 Score=22.12 Aligned_cols=91 Identities=12% Similarity=0.117 Sum_probs=53.3
Q ss_pred HHHHHHHhhhCCCeEEEEeCCchHHHHHHHHH---cCCcccceeeCCCC--CCCCC---hHHHHHHHHhcCCCCCcEEEE
Q 023578 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNR---FGITFSPALSREFR--PYKPD---PGPLLHICSTWEVQPNEVMMV 219 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~---~g~~fd~v~~~~~~--~~Kp~---~~~~~~~~~~lgi~~~~~v~i 219 (280)
..++|+..+++||-+.-+.-.+.+.++.+++. .+.+ .++....+ ..-+. ..+...++++..++ =+++.
T Consensus 6 ~~~~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sP--vIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VP--ValHL 81 (284)
T PRK12737 6 TKNMLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRSP--VILAGTPGTFSYAGTDYIVAIAEVAARKYNIP--LALHL 81 (284)
T ss_pred HHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCC--EEEEcCccHHhhCCHHHHHHHHHHHHHHCCCC--EEEEC
Confidence 56788888888888888877777777776643 3332 22221110 11111 12345566666653 33444
Q ss_pred cC--CchhhHHHHHHcCCcEEEEcCC
Q 023578 220 GD--SLKDDVACGKRAGAFTCLLDET 243 (280)
Q Consensus 220 GD--s~~~Di~~a~~~G~~~i~v~~~ 243 (280)
+- +. ..+..|-.+|+..|++..+
T Consensus 82 DH~~~~-e~i~~ai~~GftSVMiDgS 106 (284)
T PRK12737 82 DHHEDL-DDIKKKVRAGIRSVMIDGS 106 (284)
T ss_pred CCCCCH-HHHHHHHHcCCCeEEecCC
Confidence 32 23 5677777788888888753
No 449
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=22.18 E-value=3.4e+02 Score=20.24 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=10.2
Q ss_pred HHHHHHHHhcCC--CCCcEEEEcCCc
Q 023578 200 GPLLHICSTWEV--QPNEVMMVGDSL 223 (280)
Q Consensus 200 ~~~~~~~~~lgi--~~~~~v~iGDs~ 223 (280)
..+..+++++|+ .-.+++.+|-+.
T Consensus 13 ~a~~~ll~~~~~~~~gk~v~VvGrs~ 38 (140)
T cd05212 13 KAVKELLNKEGVRLDGKKVLVVGRSG 38 (140)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCc
Confidence 334444444442 233444444444
No 450
>smart00455 RBD Raf-like Ras-binding domain.
Probab=22.13 E-value=84 Score=20.31 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=23.3
Q ss_pred CCCCCCChHHHHHHHHhcCCCCCcEEEE
Q 023578 192 FRPYKPDPGPLLHICSTWEVQPNEVMMV 219 (280)
Q Consensus 192 ~~~~Kp~~~~~~~~~~~lgi~~~~~v~i 219 (280)
...+++-.+++..+|++.|+.|+++..+
T Consensus 16 vrpg~tl~e~L~~~~~kr~l~~~~~~v~ 43 (70)
T smart00455 16 VRPGKTVRDALAKALKKRGLNPECCVVR 43 (70)
T ss_pred ECCCCCHHHHHHHHHHHcCCCHHHEEEE
Confidence 4466777889999999999999987766
No 451
>PLN02735 carbamoyl-phosphate synthase
Probab=22.01 E-value=2.8e+02 Score=28.77 Aligned_cols=91 Identities=14% Similarity=0.196 Sum_probs=54.3
Q ss_pred HHHHHHhhhCCCe---EEEEeCCchHHHHHHHHHcCCc--ccceee--CCCCCCCCChHHHHHH---HHhcCCCCCcEEE
Q 023578 149 AQLCGFLDSKKIR---RGLITRNIKEAVDLFHNRFGIT--FSPALS--REFRPYKPDPGPLLHI---CSTWEVQPNEVMM 218 (280)
Q Consensus 149 ~~~l~~L~~~g~~---i~ivS~~~~~~~~~~l~~~g~~--fd~v~~--~~~~~~Kp~~~~~~~~---~~~lgi~~~~~v~ 218 (280)
.+.|+..|..|+. ++-+.+.....++..-+.+|+. +..|-+ +|..... +..|... .+....+...+++
T Consensus 502 ~~~~~~~k~~g~~d~~ia~~~~~~~~~v~~~r~~~~~~~~~k~vd~~a~ef~~~t--~y~y~ty~~~~~~~~~~~kkvli 579 (1102)
T PLN02735 502 KDDFYEVKRRGFSDKQIAFATKSTEKEVRSKRLSLGVTPSYKRVDTCAAEFEANT--PYMYSSYDGECESAPTNKKKVLI 579 (1102)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHHCCCEeEEEeeCCCccccCCCC--CcceeECCCCCCcccCCCceEEE
Confidence 4678888888873 4445566666677777888876 333322 2211111 1111111 0111124578999
Q ss_pred EcCCchhh--------------HHHHHHcCCcEEEEcC
Q 023578 219 VGDSLKDD--------------VACGKRAGAFTCLLDE 242 (280)
Q Consensus 219 iGDs~~~D--------------i~~a~~~G~~~i~v~~ 242 (280)
+|-++ +. +.++++.|+.+|+++.
T Consensus 580 lG~G~-~~igq~iefd~~~v~~~~alr~~G~~tI~v~~ 616 (1102)
T PLN02735 580 LGGGP-NRIGQGIEFDYCCCHASFALQDAGYETIMMNS 616 (1102)
T ss_pred eCccc-cccCcccccceeHHHHHHHHHHcCCeEEEEeC
Confidence 99998 64 4678899999999985
No 452
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=21.87 E-value=4.3e+02 Score=26.30 Aligned_cols=75 Identities=12% Similarity=-0.016 Sum_probs=47.9
Q ss_pred CCCCChHHHHHHHHhc------CCCCCcEEEEcCCchhhHHHHHHcCCcE------------------------------
Q 023578 194 PYKPDPGPLLHICSTW------EVQPNEVMMVGDSLKDDVACGKRAGAFT------------------------------ 237 (280)
Q Consensus 194 ~~Kp~~~~~~~~~~~l------gi~~~~~v~iGDs~~~Di~~a~~~G~~~------------------------------ 237 (280)
.+-.|....+.+++++ +-.++=++++||....|=.|.+..+-..
T Consensus 675 ~gvnKG~Av~~ll~~~~~~~~~~~~~dfvl~~Gdd~~~DEdmF~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (797)
T PLN03063 675 IGVTKGAAIGRILGEIVHNKSMTTPIDFVFCSGYFLEKDEDVYTFFEPEILSKKKSSSSNYSDSDKKVSSNLVDLKGENY 754 (797)
T ss_pred CCCChHHHHHHHHHHhhhccccCCCCCEEEEeCCCCCCcHHHHHhccccccccccccccccccccccccccccccccCce
Confidence 3445678888888876 2356678899997412544444433211
Q ss_pred EEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhccC
Q 023578 238 CLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANFD 277 (280)
Q Consensus 238 i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~~ 277 (280)
+.|. -|. ....|.|.+++..|+.++|..+.+
T Consensus 755 ~~v~----VG~-----~~s~A~y~l~~~~eV~~lL~~l~~ 785 (797)
T PLN03063 755 FSCA----IGQ-----ARTKARYVLDSSNDVVSLLHKLAV 785 (797)
T ss_pred EEEE----ECC-----CCccCeecCCCHHHHHHHHHHHhc
Confidence 1111 111 136899999999999999998765
No 453
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=21.79 E-value=39 Score=24.71 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=11.8
Q ss_pred ccEEEEeCCCccc
Q 023578 68 LRGVVFDMDGTLT 80 (280)
Q Consensus 68 ~k~iiFD~DGTL~ 80 (280)
+..++||+.+||-
T Consensus 45 P~iV~FDmK~Tld 57 (128)
T PRK13717 45 PVTAAFNMKQTVD 57 (128)
T ss_pred CeEEEEehHHHHH
Confidence 6899999999995
No 454
>PRK14129 heat shock protein HspQ; Provisional
Probab=21.72 E-value=87 Score=22.06 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=14.8
Q ss_pred CccEEEEeCCCcccCCCCC
Q 023578 67 RLRGVVFDMDGTLTVPVID 85 (280)
Q Consensus 67 ~~k~iiFD~DGTL~d~~~~ 85 (280)
.+++||||+|-+...+.+.
T Consensus 18 ~yrGVV~DVDP~fs~~e~w 36 (105)
T PRK14129 18 GYLGVVVDIDPEYSLEEPS 36 (105)
T ss_pred CCCeEEEeeCCCcCCCchh
Confidence 3789999999988766543
No 455
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=21.55 E-value=5.1e+02 Score=22.03 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=27.6
Q ss_pred CCchHHHHHHHHHcCCc-ccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCc
Q 023578 167 RNIKEAVDLFHNRFGIT-FSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSL 223 (280)
Q Consensus 167 ~~~~~~~~~~l~~~g~~-fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~ 223 (280)
-|-.......++..|+. +|.. -|.=.-.+...+++.-.-.+++.|||..
T Consensus 74 HGv~~~~~~~~~~~gl~viDaT--------CP~V~kv~~~v~~~~~~Gy~iiiiG~~~ 123 (280)
T TIGR00216 74 HGVPPEVREELEKKGLEVIDAT--------CPLVTKVHNAVKKYAKEGYHVILIGKKN 123 (280)
T ss_pred CCCCHHHHHHHHHCCCeEEeCC--------CcccHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 35555566666666765 3321 2222344555555554556788888866
No 456
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=21.42 E-value=2.6e+02 Score=18.59 Aligned_cols=35 Identities=20% Similarity=0.066 Sum_probs=25.3
Q ss_pred HHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc
Q 023578 149 AQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (280)
Q Consensus 149 ~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~ 183 (280)
..+.+.+.+.|....+..+........+.+++|..
T Consensus 44 ~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~klGf~ 78 (86)
T PF08445_consen 44 AALARELLERGKTPFLYVDADNEASIRLYEKLGFR 78 (86)
T ss_dssp HHHHHHHHHTTSEEEEEEETT-HHHHHHHHHCT-E
T ss_pred HHHHHHHHhCCCcEEEEEECCCHHHHHHHHHcCCE
Confidence 34677888888888777766666678888999965
No 457
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=21.17 E-value=3.3e+02 Score=19.66 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=41.2
Q ss_pred cCHHHHHHH-hhhCCCeEEEEeCCchHHHHHHHHHcCCcccceee--CCCCCCCCChHHHHHHHHh
Q 023578 146 PGTAQLCGF-LDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALS--REFRPYKPDPGPLLHICST 208 (280)
Q Consensus 146 pg~~~~l~~-L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~--~~~~~~Kp~~~~~~~~~~~ 208 (280)
+++.+.++. +.+.++-++++|...-..+...++++.-....++- +......|..+.+.+.+++
T Consensus 46 eei~~~~~~~l~~~digIIlIte~~a~~i~~~I~~~~~~~PaIieIP~k~~~y~~~~d~i~~~~~~ 111 (115)
T TIGR01101 46 SEIEDCFNRFLKRDDIAIILINQHIAEMIRHAVDAHTRSIPAVLEIPSKDHPYDASKDSILRRARG 111 (115)
T ss_pred HHHHHHHHHHhhcCCeEEEEEcHHHHHHhHHHHHhcCCcCCEEEEECCCCCCCCCcccHHHHHHHH
Confidence 567788888 77788999999998888888888876622444432 3234445555555544443
No 458
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=21.06 E-value=5.8e+02 Score=22.46 Aligned_cols=88 Identities=11% Similarity=0.123 Sum_probs=51.9
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCch-----HHHHHHH---HHcCCcccceeeCCCCCCCCChHHHHHHHHhc-CCCC-
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIK-----EAVDLFH---NRFGITFSPALSREFRPYKPDPGPLLHICSTW-EVQP- 213 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~-----~~~~~~l---~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~l-gi~~- 213 (280)
..+++.+.++.++++|.++++++|... ......+ ...| .|.++.+| |..+..+.+.. +++-
T Consensus 47 s~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~G--vDaviv~D-------pg~i~l~~e~~p~l~ih 117 (347)
T COG0826 47 SVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELG--VDAVIVAD-------PGLIMLARERGPDLPIH 117 (347)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcC--CCEEEEcC-------HHHHHHHHHhCCCCcEE
Confidence 345688999999999999999998321 2122233 2333 56666544 33444444433 1321
Q ss_pred CcEEEEcCCchhhHHHHHHcCCcEEEEc
Q 023578 214 NEVMMVGDSLKDDVACGKRAGAFTCLLD 241 (280)
Q Consensus 214 ~~~v~iGDs~~~Di~~a~~~G~~~i~v~ 241 (280)
-.+-+--.+. ..++-..+.|+.-+...
T Consensus 118 ~S~q~~v~N~-~~~~f~~~~G~~rvVl~ 144 (347)
T COG0826 118 VSTQANVTNA-ETAKFWKELGAKRVVLP 144 (347)
T ss_pred EeeeEecCCH-HHHHHHHHcCCEEEEeC
Confidence 1233444666 78888888897655544
No 459
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=21.00 E-value=6.3e+02 Score=22.90 Aligned_cols=77 Identities=12% Similarity=0.043 Sum_probs=43.9
Q ss_pred CCeEEEEeCCch-HHHHHHHHHcCCcccceeeCCC----------CCCCCChHHHHHHHHhcCCCCCcEEEEcCCchhhH
Q 023578 159 KIRRGLITRNIK-EAVDLFHNRFGITFSPALSREF----------RPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKDDV 227 (280)
Q Consensus 159 g~~i~ivS~~~~-~~~~~~l~~~g~~fd~v~~~~~----------~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~Di 227 (280)
|.+++|..+... ..+-..+..+|+....+++... ..--.+..-++..+++.+.+ +++|++. .-
T Consensus 311 Gkrvai~~~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~i~~~~~d----liig~s~--~k 384 (432)
T TIGR01285 311 GKKVAIAAEPDLLAAWATFFTSMGAQIVAAVTTTGSPLLQKLPVETVVIGDLEDLEDLACAAGAD----LLITNSH--GR 384 (432)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhCCcCcEEeCCHHHHHHHHhhcCCC----EEEECcc--hH
Confidence 667777765433 2233445667776444443211 00113444555666665433 7788887 46
Q ss_pred HHHHHcCCcEEEEc
Q 023578 228 ACGKRAGAFTCLLD 241 (280)
Q Consensus 228 ~~a~~~G~~~i~v~ 241 (280)
..|++.|+..+-+.
T Consensus 385 ~~A~~l~ip~ir~g 398 (432)
T TIGR01285 385 ALAQRLALPLVRAG 398 (432)
T ss_pred HHHHHcCCCEEEec
Confidence 68888999887655
No 460
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=20.96 E-value=1.8e+02 Score=19.49 Aligned_cols=33 Identities=0% Similarity=-0.111 Sum_probs=25.0
Q ss_pred HHHHHHHhhhCCCe-EEEEeCCchHHHHHHHHHc
Q 023578 148 TAQLCGFLDSKKIR-RGLITRNIKEAVDLFHNRF 180 (280)
Q Consensus 148 ~~~~l~~L~~~g~~-i~ivS~~~~~~~~~~l~~~ 180 (280)
+.+.|+..+..|+. ++|+.|++.+-...+++.+
T Consensus 7 L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~ 40 (97)
T PF13704_consen 7 LPEWLAHHLALGVDHIYIYDDGSTDGTREILRAL 40 (97)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhC
Confidence 45677777777776 8888888887777777766
No 461
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=20.95 E-value=99 Score=25.54 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=30.7
Q ss_pred cCcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCc
Q 023578 144 IMPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGIT 183 (280)
Q Consensus 144 ~~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~ 183 (280)
..||-...-+.|++.|++++|+|+++..-.+..++..|+.
T Consensus 71 ~~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l~~~g~G 110 (276)
T PF01993_consen 71 AAPGPTKAREMLSAKGIPCIVISDAPTKKAKDALEEEGFG 110 (276)
T ss_dssp TSHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHHHHTT-E
T ss_pred CCCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHHHhcCCc
Confidence 3567677888889999999999998877677778887765
No 462
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=20.86 E-value=6.8e+02 Score=23.20 Aligned_cols=89 Identities=11% Similarity=0.167 Sum_probs=53.6
Q ss_pred cCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEEcCCchh
Q 023578 146 PGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEVMMVGDSLKD 225 (280)
Q Consensus 146 pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~iGDs~~~ 225 (280)
..+.+.++.++.++ +.++++.. ....+.+++|+..-.++. ......|.+.-+..+.+.+.-..-.|+|+.-.. +
T Consensus 358 ~~~~~~la~ip~k~-r~vvt~H~---af~YLa~~YGL~~~~~~~-~~~~~ePS~~~L~~Li~~IK~~~V~~IF~Epq~-~ 431 (479)
T TIGR03772 358 TYVRRTIATIPPSR-RHLITTHD---AYSYLGQAYGLNIAGFVT-PNPAVEPSLADRRRLTRTIENLKVPAVFLEPNL-A 431 (479)
T ss_pred HHHHHHhhhccccC-CEEEEECC---cHHHHHHHCCCeEEeeec-cCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-C
Confidence 34444555444443 34444443 245577899987333332 233456888888887777765555799998877 4
Q ss_pred -h----HHHHHHcCCcEEEE
Q 023578 226 -D----VACGKRAGAFTCLL 240 (280)
Q Consensus 226 -D----i~~a~~~G~~~i~v 240 (280)
. -..|+..|+..+.+
T Consensus 432 ~~~~~l~~IA~e~Gv~V~~l 451 (479)
T TIGR03772 432 ARSTTLNEIADELGVRVCAI 451 (479)
T ss_pred CchHHHHHHHHHcCCcEEee
Confidence 2 24567789887654
No 463
>PRK00208 thiG thiazole synthase; Reviewed
Probab=20.79 E-value=5e+02 Score=21.65 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=57.7
Q ss_pred HHHHHHhhhCCCeEEEEeCCchHHHHHH-----H-HHcCCc-ccceeeCCCCCCCCChHHHHHHHHhc---CCCCCcEE-
Q 023578 149 AQLCGFLDSKKIRRGLITRNIKEAVDLF-----H-NRFGIT-FSPALSREFRPYKPDPGPLLHICSTW---EVQPNEVM- 217 (280)
Q Consensus 149 ~~~l~~L~~~g~~i~ivS~~~~~~~~~~-----l-~~~g~~-fd~v~~~~~~~~Kp~~~~~~~~~~~l---gi~~~~~v- 217 (280)
..+++.++..++.+--=|++.+..-+.+ . +.++.+ +..-+-+|....-|++....+.++.+ |. +++
T Consensus 52 ~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf---~vlp 128 (250)
T PRK00208 52 DNLLDLLPPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGF---VVLP 128 (250)
T ss_pred chHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCC---EEEE
Confidence 4567777766676555555544332221 1 223333 23324455666678889999999999 76 477
Q ss_pred EEcCCchhhHHHHHHcCCcEEE
Q 023578 218 MVGDSLKDDVACGKRAGAFTCL 239 (280)
Q Consensus 218 ~iGDs~~~Di~~a~~~G~~~i~ 239 (280)
|.-|++ .-.+....+|...++
T Consensus 129 yc~~d~-~~ak~l~~~G~~~vm 149 (250)
T PRK00208 129 YCTDDP-VLAKRLEEAGCAAVM 149 (250)
T ss_pred EeCCCH-HHHHHHHHcCCCEeC
Confidence 899999 888999999998884
No 464
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=20.76 E-value=47 Score=22.13 Aligned_cols=16 Identities=25% Similarity=0.163 Sum_probs=12.6
Q ss_pred cEEEEeCCCcccCCCC
Q 023578 69 RGVVFDMDGTLTVPVI 84 (280)
Q Consensus 69 k~iiFD~DGTL~d~~~ 84 (280)
-.++++=|||.+|.+.
T Consensus 41 ~~lvL~eDGT~VddEe 56 (78)
T PF02017_consen 41 VRLVLEEDGTEVDDEE 56 (78)
T ss_dssp CEEEETTTTCBESSCH
T ss_pred cEEEEeCCCcEEccHH
Confidence 3478999999997643
No 465
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=20.72 E-value=3.1e+02 Score=22.22 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=36.2
Q ss_pred CHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccceee
Q 023578 147 GTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPALS 189 (280)
Q Consensus 147 g~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~ 189 (280)
++...+..|.+++..+++||-.+...+...-++.|..|..+-+
T Consensus 94 ~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~pw~Ss 136 (211)
T PF05988_consen 94 HIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFPWYSS 136 (211)
T ss_pred hhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCceEEEc
Confidence 3446678889999999999999999999999999998665544
No 466
>COG3785 Uncharacterized conserved protein [Function unknown]
Probab=20.65 E-value=97 Score=21.81 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=19.7
Q ss_pred CccEEEEeCCCcccCCCCCHHHHHHH
Q 023578 67 RLRGVVFDMDGTLTVPVIDFPAMYRA 92 (280)
Q Consensus 67 ~~k~iiFD~DGTL~d~~~~~~~~~~~ 92 (280)
+.+.|+||+|-.-.++.+.+.+.-..
T Consensus 27 pfrGVV~DvDPeyanteew~~~ip~~ 52 (116)
T COG3785 27 PFRGVVFDVDPEYANTEEWPDEIPVN 52 (116)
T ss_pred ccceEEEecCcccccCccChhhcccc
Confidence 47999999999999887766554333
No 467
>PRK13936 phosphoheptose isomerase; Provisional
Probab=20.62 E-value=1.1e+02 Score=24.29 Aligned_cols=31 Identities=6% Similarity=-0.070 Sum_probs=24.8
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDL 175 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~ 175 (280)
.+.+.++++.++++|.+++.+|+........
T Consensus 124 t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~ 154 (197)
T PRK13936 124 SANVIQAIQAAHEREMHVVALTGRDGGKMAS 154 (197)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCChhhh
Confidence 4678889999999999999999866544444
No 468
>PRK06524 biotin carboxylase-like protein; Validated
Probab=20.58 E-value=7e+02 Score=23.23 Aligned_cols=116 Identities=13% Similarity=0.059 Sum_probs=62.0
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCccc--ceeeCCCCCCCCChHHHHHHHHhcCCCCCcEEEE-cC
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFS--PALSREFRPYKPDPGPLLHICSTWEVQPNEVMMV-GD 221 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd--~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~v~i-GD 221 (280)
.|++.++++.=-. |-+...++- ...++.+++.+|+.+- ..-..... . +-...+.+++..|++....+.+ -+
T Consensus 93 ~~~~~~~~~~~~~-~~~~~fl~~--DG~iQ~lLE~lGIpy~gP~a~asai~--m-DK~~tK~l~~~aGIPtpp~~~~~~~ 166 (493)
T PRK06524 93 HPETLEFIKRRGP-GGKACFVMF--DEETEALARQAGLEVMHPPAELRHRL--D-SKIVTTRLANEAGVPSVPHVLGRVD 166 (493)
T ss_pred CHHHHHHHHhhCC-CCceEEecC--CHHHHHHHHHCCCeEECcCHHHHHHh--C-CHHHHHHHHHHcCCCCCCcccccCC
Confidence 4566555544322 235555553 2347778899998621 11111111 1 1245667889999965444442 23
Q ss_pred CchhhHH-HHHH--cCCcEEEEcCCCCCCccccccCCCCCCEEEcCHHHHHHHHHhcc
Q 023578 222 SLKDDVA-CGKR--AGAFTCLLDETGRYSADDFTKSNLQPDFRVSSLTEVLSILEANF 276 (280)
Q Consensus 222 s~~~Di~-~a~~--~G~~~i~v~~~~~~~~~~~~~~~~~~d~v~~~~~dl~~~l~~~~ 276 (280)
+. .++. .+.. .|.+++.=...++ ....-.++.+-.|+...+++++
T Consensus 167 ~~-eel~~~~~~~~IGyPvVVKP~~GG---------SS~GV~~Vkn~eELe~a~~~~~ 214 (493)
T PRK06524 167 SY-DELSALAHGAGLGDDLVVQTPYGD---------SGSTTFFVRGQRDWDKYAGGIV 214 (493)
T ss_pred CH-HHHHHHHHhccCCCcEEEEECCCC---------CCcCEEEeCCHHHHHHHHHHhc
Confidence 44 3443 3333 7887654332111 1244557888899888887754
No 469
>PLN00135 malate dehydrogenase
Probab=20.38 E-value=3.8e+02 Score=23.12 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=43.3
Q ss_pred HHHHhhhC---CCeEEEEeCCchHHHHHHHHHcCCcccceeeCCCCCCCCChHHHHHHHHhcCCCCCcE---EEEcCCc
Q 023578 151 LCGFLDSK---KIRRGLITRNIKEAVDLFHNRFGITFSPALSREFRPYKPDPGPLLHICSTWEVQPNEV---MMVGDSL 223 (280)
Q Consensus 151 ~l~~L~~~---g~~i~ivS~~~~~~~~~~l~~~g~~fd~v~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~---v~iGDs~ 223 (280)
+...++++ +..+.++||--.-+.....+..|..-..+++.-.. -...++-..+.+++|++++++ +++|..-
T Consensus 90 i~~~i~~~~~p~aivivvsNPvDv~t~~~~~~sg~~~~~vig~gt~--LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG 166 (309)
T PLN00135 90 QASALEKHAAPDCKVLVVANPANTNALILKEFAPSIPEKNITCLTR--LDHNRALGQISERLGVPVSDVKNVIIWGNHS 166 (309)
T ss_pred HHHHHHHhcCCCeEEEEeCCcHHHHHHHHHHHcCCCCccEEEeeeh--HHHHHHHHHHHHHhCcChhhceeeEEEEcCC
Confidence 44444442 34677778655555555667777763445442211 123456677888999998877 5778766
No 470
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=20.33 E-value=1.2e+02 Score=25.21 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=23.4
Q ss_pred ccCcCHHHHHHHhhhCCCeEEEEeCCc
Q 023578 143 QIMPGTAQLCGFLDSKKIRRGLITRNI 169 (280)
Q Consensus 143 ~~~pg~~~~l~~L~~~g~~i~ivS~~~ 169 (280)
.-+|+..++++.|+++|+++++..+-.
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~ 89 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPY 89 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChh
Confidence 357899999999999999999988754
No 471
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=20.27 E-value=1.5e+02 Score=25.94 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=46.0
Q ss_pred HhhhC-CCe-EEEEeCCc--hHHHHHHHHHcCCc-ccceeeCCC-CCCCCChHH---HHHHHHhcCCCCCcEEEEcCCch
Q 023578 154 FLDSK-KIR-RGLITRNI--KEAVDLFHNRFGIT-FSPALSREF-RPYKPDPGP---LLHICSTWEVQPNEVMMVGDSLK 224 (280)
Q Consensus 154 ~L~~~-g~~-i~ivS~~~--~~~~~~~l~~~g~~-fd~v~~~~~-~~~Kp~~~~---~~~~~~~lgi~~~~~v~iGDs~~ 224 (280)
+|++. ++. ..|+|+.. ..+...+.+.+++. .+..+..+. ...+--..+ +..++++. .|+-+++.||..
T Consensus 2 ~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~Pd~Vlv~GD~~- 78 (346)
T PF02350_consen 2 ALQKDPGFELILIVTGQHLDPEMGDTFFEGFGIPKPDYLLDSDSQSMAKSTGLAIIELADVLERE--KPDAVLVLGDRN- 78 (346)
T ss_dssp HHHCSTTEEEEEEEECSS--CHHHHHHHHHTT--SEEEE--STTS-HHHHHHHHHHHHHHHHHHH--T-SEEEEETTSH-
T ss_pred hhhhCCCCCEEEEEeCCCCCHHHHHHHHhhCCCCCCCcccccccchHHHHHHHHHHHHHHHHHhc--CCCEEEEEcCCc-
Confidence 45554 555 45667755 66777777877773 444433221 111111112 23333333 789999999999
Q ss_pred hhHHHH---HHcCCcEEEEcC
Q 023578 225 DDVACG---KRAGAFTCLLDE 242 (280)
Q Consensus 225 ~Di~~a---~~~G~~~i~v~~ 242 (280)
.=+.+| ...+++++.+..
T Consensus 79 ~~la~alaA~~~~ipv~Hiea 99 (346)
T PF02350_consen 79 EALAAALAAFYLNIPVAHIEA 99 (346)
T ss_dssp HHHHHHHHHHHTT-EEEEES-
T ss_pred hHHHHHHHHHHhCCCEEEecC
Confidence 766644 445899999874
No 472
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=20.26 E-value=1.1e+02 Score=24.63 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=23.8
Q ss_pred CcCHHHHHHHhhhCCCeEEEEeCCchH
Q 023578 145 MPGTAQLCGFLDSKKIRRGLITRNIKE 171 (280)
Q Consensus 145 ~pg~~~~l~~L~~~g~~i~ivS~~~~~ 171 (280)
.+++.++++.+++.|+++.+=||++..
T Consensus 85 ~~~l~~Ll~~l~~~g~~~~lETngti~ 111 (212)
T COG0602 85 QPNLLELLELLKRLGFRIALETNGTIP 111 (212)
T ss_pred cccHHHHHHHHHhCCceEEecCCCCcc
Confidence 568999999999999999999987644
No 473
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.16 E-value=2.6e+02 Score=21.41 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=32.8
Q ss_pred HHHHHHHhhhCCCeEEEEeCCchHHHHHHHHHcCCcccce
Q 023578 148 TAQLCGFLDSKKIRRGLITRNIKEAVDLFHNRFGITFSPA 187 (280)
Q Consensus 148 ~~~~l~~L~~~g~~i~ivS~~~~~~~~~~l~~~g~~fd~v 187 (280)
..+.+..+++.|..|.-+|-.+....+...++.|+.|+..
T Consensus 53 Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LL 92 (157)
T COG1225 53 FRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLL 92 (157)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceee
Confidence 4456777888899999999988888899999999886644
No 474
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=20.02 E-value=1.6e+02 Score=15.62 Aligned_cols=21 Identities=5% Similarity=0.022 Sum_probs=14.6
Q ss_pred CCCeEEEEeCCchHHHHHHHH
Q 023578 158 KKIRRGLITRNIKEAVDLFHN 178 (280)
Q Consensus 158 ~g~~i~ivS~~~~~~~~~~l~ 178 (280)
-+..|.|-||+..+.....++
T Consensus 3 g~LqI~ISTnG~sP~la~~iR 23 (30)
T PF14824_consen 3 GPLQIAISTNGKSPRLARLIR 23 (30)
T ss_dssp TTEEEEEEESSS-HHHHHHHH
T ss_pred CCeEEEEECCCCChHHHHHHH
Confidence 357899999988877665553
Done!