BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023579
         (280 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZY8|K Chain K, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
           And Dihydrolipoamide Dehydrogenase-Binding Protein
           (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
           Complex.
 pdb|1ZY8|L Chain L, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
           And Dihydrolipoamide Dehydrogenase-Binding Protein
           (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
           Complex.
 pdb|1ZY8|M Chain M, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
           And Dihydrolipoamide Dehydrogenase-Binding Protein
           (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
           Complex.
 pdb|1ZY8|N Chain N, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
           And Dihydrolipoamide Dehydrogenase-Binding Protein
           (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
           Complex.
 pdb|1ZY8|O Chain O, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
           And Dihydrolipoamide Dehydrogenase-Binding Protein
           (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
           Complex
          Length = 229

 Score = 32.7 bits (73), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 48  PHTLRFRVSAAARVGHLLHDAGATAAVLVGAYGLVLSFDNLSQRKLIQ--QNSTSTEAR 104
           P TLRFR+S AAR     H   A+     G  G+    D L   KL+Q  Q    TE+R
Sbjct: 124 PGTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDAL---KLVQLKQTGKITESR 179


>pdb|2F5Z|K Chain K, Crystal Structure Of Human Dihydrolipoamide
          Dehydrogenase (E3) Complexed To The E3-Binding Domain
          Of Human E3- Binding Protein
 pdb|2F5Z|L Chain L, Crystal Structure Of Human Dihydrolipoamide
          Dehydrogenase (E3) Complexed To The E3-Binding Domain
          Of Human E3- Binding Protein
 pdb|2F5Z|M Chain M, Crystal Structure Of Human Dihydrolipoamide
          Dehydrogenase (E3) Complexed To The E3-Binding Domain
          Of Human E3- Binding Protein
 pdb|2F5Z|N Chain N, Crystal Structure Of Human Dihydrolipoamide
          Dehydrogenase (E3) Complexed To The E3-Binding Domain
          Of Human E3- Binding Protein
 pdb|2F5Z|O Chain O, Crystal Structure Of Human Dihydrolipoamide
          Dehydrogenase (E3) Complexed To The E3-Binding Domain
          Of Human E3- Binding Protein
 pdb|2F60|K Chain K, Crystal Structure Of The Dihydrolipoamide Dehydrogenase
          (e3)-binding Domain Of Human E3-binding Protein
          Length = 64

 Score = 29.6 bits (65), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 48 PHTLRFRVSAAARVGHLLHDAGATAAVLVGAYGLVLSFDNLSQRKLIQQNST 99
          P TLRFR+S AAR     H   A+     G  G+    D L   KL+Q   T
Sbjct: 5  PGTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDAL---KLVQLKQT 53


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,449,141
Number of Sequences: 62578
Number of extensions: 281162
Number of successful extensions: 735
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 735
Number of HSP's gapped (non-prelim): 5
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)