Query 023579
Match_columns 280
No_of_seqs 207 out of 1080
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 05:06:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4453 Predicted ER membrane 100.0 8.4E-39 1.8E-43 285.3 16.9 242 18-278 22-269 (269)
2 COG0170 SEC59 Dolichol kinase 99.9 3.1E-22 6.7E-27 180.0 13.8 138 129-277 77-214 (216)
3 PF01148 CTP_transf_1: Cytidyl 99.7 1E-16 2.2E-21 143.7 18.3 111 165-278 128-256 (259)
4 KOG2468 Dolichol kinase [Lipid 99.6 2.2E-15 4.8E-20 146.4 10.5 141 123-273 357-507 (510)
5 PRK11624 cdsA CDP-diglyceride 99.2 2.9E-10 6.3E-15 106.4 12.7 107 145-255 122-241 (285)
6 PLN02594 phosphatidate cytidyl 98.8 5.9E-08 1.3E-12 92.9 12.2 54 171-224 129-183 (342)
7 COG0575 CdsA CDP-diglyceride s 98.7 1.2E-07 2.6E-12 87.7 11.8 107 145-254 108-223 (265)
8 PLN02953 phosphatidate cytidyl 98.6 2.1E-07 4.6E-12 90.4 10.8 73 179-255 281-357 (403)
9 PRK04032 hypothetical protein; 97.6 0.0002 4.3E-09 62.1 7.1 66 186-255 22-91 (159)
10 COG4589 Predicted CDP-diglycer 97.4 0.00054 1.2E-08 63.5 7.8 49 177-226 184-234 (303)
11 KOG1440 CDP-diacylglycerol syn 96.7 0.0016 3.5E-08 63.9 4.3 48 177-224 230-278 (432)
12 TIGR00297 conserved hypothetic 96.5 0.14 3.1E-06 47.2 15.0 79 169-254 114-202 (237)
13 PF01940 DUF92: Integral membr 95.8 0.9 1.9E-05 41.6 16.8 101 169-276 109-224 (226)
14 COG1836 Predicted membrane pro 95.6 0.37 8.1E-06 44.5 13.2 47 175-221 129-185 (247)
15 PF01864 DUF46: Putative integ 90.7 0.63 1.4E-05 41.1 5.8 58 197-255 44-105 (175)
16 PF14126 DUF4293: Domain of un 68.7 4.3 9.3E-05 34.8 2.6 37 101-137 112-148 (149)
17 PF01554 MatE: MatE; InterPro 54.9 62 0.0013 26.0 7.1 47 172-219 42-89 (162)
18 PF07281 INSIG: Insulin-induce 44.5 1E+02 0.0022 27.6 7.3 61 182-255 88-148 (193)
19 KOG4491 Predicted membrane pro 39.6 2.4E+02 0.0052 26.7 9.0 92 130-221 107-227 (323)
20 PF09335 SNARE_assoc: SNARE as 34.9 1.8E+02 0.004 22.5 6.8 23 171-193 22-44 (123)
21 KOG4142 Phospholipid methyltra 31.8 3.8E+02 0.0081 24.0 8.5 113 87-214 44-162 (208)
22 COG0534 NorM Na+-driven multid 31.7 2.4E+02 0.0052 27.9 8.4 49 172-220 290-338 (455)
23 COG4803 Predicted membrane pro 29.5 30 0.00065 30.2 1.4 62 189-265 45-106 (170)
24 PF11712 Vma12: Endoplasmic re 28.4 2.1E+02 0.0045 23.9 6.3 50 205-254 80-129 (142)
25 PF11283 DUF3084: Protein of u 25.9 1.2E+02 0.0026 23.6 3.9 15 182-196 19-33 (79)
26 PF05366 Sarcolipin: Sarcolipi 22.2 68 0.0015 20.3 1.6 18 260-277 8-25 (31)
27 COG0586 DedA Uncharacterized m 21.2 63 0.0014 28.8 1.9 23 173-195 64-86 (208)
No 1
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=100.00 E-value=8.4e-39 Score=285.29 Aligned_cols=242 Identities=40% Similarity=0.611 Sum_probs=190.5
Q ss_pred cCCCCCcccCCCCceeeccCCcCCcccccCCCcccchhhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhcccceecC
Q 023579 18 VGSAATHVFPISPRVFRGSMSVWPARVSLDPHTLRFRVSAAARVGHLLHDAGATAAVLVGAYGLVLSFDNLSQRKLIQQN 97 (280)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~~~~~~~~~~~~~el~~R~~~~~~ 97 (280)
|.+| +-.-.+|+ +.+.+|++++ .+++.+++- ..+.+.. +.+.+|+++.+++.+++++.+.+|++..||+.++|+
T Consensus 22 f~Sp--~~~it~p~-~~~~~ss~~~-~~~~~r~s~-L~s~~w~-ns~kheiprkv~hssigf~~l~l~g~g~kr~~i~~~ 95 (269)
T KOG4453|consen 22 FCSP--GFLITSPC-FIGLTSSGSA-TQLRARRSL-LSSAVWT-NSLKHEIPRKVAHSSIGFALLLLFGSGTKRNVIQQS 95 (269)
T ss_pred cCCC--Cceeeeee-eeccccCCCc-ccchHHHhH-hHHhhcc-hhhhhhhchhHhhhhHHHHHHHHHhcccchhhhhHH
Confidence 4455 34667788 8888887766 444443321 2333333 669999999999999999999999999999999998
Q ss_pred CCchhHHHHHHHHHHHH---HHHHHHhhccccchhhhhhhhhcccccCcccchHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 023579 98 STSTEARYFAALVPLVN---CLRLVINGLSLVKDDGLIKSVTREGNPKELLRGPLYYVLMLILSALVFWRDSPVGVISLS 174 (280)
Q Consensus 98 s~~~~~~~~aa~vP~l~---~lrl~~~Gl~~~~~~~lv~sl~R~ge~~ell~G~lyy~l~~~l~~llfw~~~piai~aIl 174 (280)
-.--.-..+-..+-.++ .-|++.+|+|+..+| ++|+ +++|++||.+++.+...+||+++|++.+.++
T Consensus 96 Li~kfi~ifigdlirlnWP~FsrLy~r~lg~lmre-----~erh-----l~nGvLfYvLgl~fs~~ff~kespi~s~~Ll 165 (269)
T KOG4453|consen 96 LIRKFIHIFIGDLIRLNWPIFSRLYIRGLGILMRE-----VERH-----LLNGVLFYVLGLLFSAVFFWKESPIGSISLL 165 (269)
T ss_pred HHHHHHHHHHhHHHHhccHHHHHHHHhcccccchH-----HHHH-----HhcchHHHHHHHHHHhhccccccHHHHHHHH
Confidence 22111111111111111 337778888765543 4443 6899999999999999999999888777766
Q ss_pred HHHhhhhHhhhhhcccCCccccCCCCcChhHHHHHHHHHHHHHHHHHHHHhhcc--ccccch-HHHHHHHHHHHHHHHHH
Q 023579 175 MMCGGDGIADVIGRRFGSMKIFYNEKKSWAGSISMFVFGFLVSTGMLYFYSILG--YYQLDW-IETLQRVALVSLVATVV 251 (280)
Q Consensus 175 ~L~~GDg~AalvGr~~Gr~kl~~~~~KS~eGSla~fl~s~l~s~~~l~~f~~~g--~~~~~~-~~~l~~~li~alvatlv 251 (280)
.+| |++|+++|||||+.|.+++++||++||++||.+++++++.+++||.++| |++.+| .......++++++++++
T Consensus 166 swc--Dt~AdtvGRKfG~~tpk~aknKSlAGSIgaft~Gvf~c~vy~gyf~s~g~~~l~~s~r~~~~~l~l~~g~vaAlv 243 (269)
T KOG4453|consen 166 SWC--DTIADTVGRKFGSTTPKYAKNKSLAGSIGAFTFGVFICIVYLGYFSSLGPDYLHMSWRETTLQLVLMVGMVAALV 243 (269)
T ss_pred HHh--hhHHHHHhhhccccCCCcCCCccccchHHHHHHHHHHHHHHHHHHhccCcchhccccccchHHHHHHHHHHHHHH
Confidence 666 9999999999999999999999999999999999999999999999888 888777 44566789999999999
Q ss_pred hhcCCCCCCCcccchHHHHHHHHHHHh
Q 023579 252 ESLPITEVVDDNISVPLASMVAAYLSF 278 (280)
Q Consensus 252 Eal~~~~~~dDNLtIPl~a~~~~~l~f 278 (280)
|++++.+ +|||+|||+++++.+|++|
T Consensus 244 Esldi~~-lDDNltIpv~Sal~~yl~f 269 (269)
T KOG4453|consen 244 ESLDITD-LDDNLTIPVASALAAYLSF 269 (269)
T ss_pred hcCCccC-CCCCeeehHHHHHHHHhcC
Confidence 9999976 9999999999999999876
No 2
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=99.88 E-value=3.1e-22 Score=179.98 Aligned_cols=138 Identities=28% Similarity=0.384 Sum_probs=99.5
Q ss_pred hhhhhhhhcccccCcccchHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhhhhHhhhhhcccCCccccCCCCcChhHHHH
Q 023579 129 DGLIKSVTREGNPKELLRGPLYYVLMLILSALVFWRDSPVGVISLSMMCGGDGIADVIGRRFGSMKIFYNEKKSWAGSIS 208 (280)
Q Consensus 129 ~~lv~sl~R~ge~~ell~G~lyy~l~~~l~~llfw~~~piai~aIl~L~~GDg~AalvGr~~Gr~kl~~~~~KS~eGSla 208 (280)
+++.+..+|+.|+++...|..+|..+..+...+++. .+++.+++++|++|||+|+++|+||||||.+.+++||+|||++
T Consensus 77 ~~~~~~~~r~~e~~~~~~g~~~~~~~~~i~~~~lf~-~~~~~~~I~~l~~GD~lAsiiG~~~G~~~~~~~~~KSleGSla 155 (216)
T COG0170 77 SELLSLIEREREKNGPGLGGIIYFIGGGLLASLLFP-IEVAIAGILVLALGDGLASIIGKRYGRHKRILGNGKSLEGSLA 155 (216)
T ss_pred HHHHHHHhhHHHhcCCCcCcHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHhhHHHHHhCcccCccccccCCCCchhhhHH
Confidence 467888999988765334556666665555554433 2688999999999999999999999999888899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchHHHHHHHHHHH
Q 023579 209 MFVFGFLVSTGMLYFYSILGYYQLDWIETLQRVALVSLVATVVESLPITEVVDDNISVPLASMVAAYLS 277 (280)
Q Consensus 209 ~fl~s~l~s~~~l~~f~~~g~~~~~~~~~l~~~li~alvatlvEal~~~~~~dDNLtIPl~a~~~~~l~ 277 (280)
||+++++++..++.|... ............+..++..|.. .+|||+|||+.+++.+++.
T Consensus 156 ~fi~~~l~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~----~~~DNltIPl~~~~~~~~~ 214 (216)
T COG0170 156 FFIASFLVLLVLYGYLGA------FVGAIGALVLEVGATATSLELL----PLDDNLTIPLFAALLAYLL 214 (216)
T ss_pred HHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHhhccCC----CCCCceeHHHHHHHHHHHh
Confidence 999999998866544321 1110001122333444455532 4799999999999998864
No 3
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=99.75 E-value=1e-16 Score=143.74 Aligned_cols=111 Identities=30% Similarity=0.509 Sum_probs=82.8
Q ss_pred CchHHHHHHHHHHhhhhHhhhhhcccCCcccc-CCCCcChhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH
Q 023579 165 DSPVGVISLSMMCGGDGIADVIGRRFGSMKIF-YNEKKSWAGSISMFVFGFLVSTGMLYFYSILGYYQLDWIETLQRVAL 243 (280)
Q Consensus 165 ~~piai~aIl~L~~GDg~AalvGr~~Gr~kl~-~~~~KS~eGSla~fl~s~l~s~~~l~~f~~~g~~~~~~~~~l~~~li 243 (280)
+.+..+.+++++++||++|+++||+||||+.| .+++|||||+++|++++++++..+..+.+... .++...+..+++
T Consensus 128 ~~~~~~~~i~~~~~gD~~A~l~G~~fGk~~~~~~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~ 204 (259)
T PF01148_consen 128 GPPLALIGILILGIGDSFAYLVGRRFGKHLAPKISPKKTWEGSIAGFISSFIISFLLLYYLSSFF---LSWWQAILISLL 204 (259)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCHHHHhHHHHHHHHHHHHHHHHhcchh---hHHHHHHHHHHH
Confidence 34567789999999999999999999999544 78999999999999999999988765543210 123333344555
Q ss_pred HHHHHH---HHhh--------------cCCCCCCCcccchHHHHHHHHHHHh
Q 023579 244 VSLVAT---VVES--------------LPITEVVDDNISVPLASMVAAYLSF 278 (280)
Q Consensus 244 ~alvat---lvEa--------------l~~~~~~dDNLtIPl~a~~~~~l~f 278 (280)
.+++++ ++|+ +|..+-.+||+..|+.++.+.|.++
T Consensus 205 ~~i~~~~gdl~~S~~KR~~~iKD~g~lipghGg~lDr~d~~l~~~~~~~~~~ 256 (259)
T PF01148_consen 205 ASIVEAFGDLFESAIKRDAGIKDSGNLIPGHGGILDRFDSLLFAAPVFYILL 256 (259)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccccccCcCCcccchHhHHHHHHHHHHHH
Confidence 555555 5556 3333347999999999999988765
No 4
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=99.61 E-value=2.2e-15 Score=146.39 Aligned_cols=141 Identities=21% Similarity=0.400 Sum_probs=103.3
Q ss_pred ccccchhhhh----hhhhcccccCcccchHHHHHHHHHHHHHHhcC--C--chH-HHHHHHHHHhhhhHhhhhhcccCCc
Q 023579 123 LSLVKDDGLI----KSVTREGNPKELLRGPLYYVLMLILSALVFWR--D--SPV-GVISLSMMCGGDGIADVIGRRFGSM 193 (280)
Q Consensus 123 l~~~~~~~lv----~sl~R~ge~~ell~G~lyy~l~~~l~~llfw~--~--~pi-ai~aIl~L~~GDg~AalvGr~~Gr~ 193 (280)
+.+++..+.+ +....|.|..++...++|..+|+.+.+++-+. + ... -..|++.+++||++|+++|+||||+
T Consensus 357 ~ri~PlG~~l~~fl~~F~DeRDsGpLIiSh~yLLiGcslPIWms~~p~~~~ral~~laGiLalGiGDTmASiiG~r~G~~ 436 (510)
T KOG2468|consen 357 LRIPPLGSALHLFLSRFTDERDSGPLIISHFYLLIGCSLPIWMSNSPCGGDRALALLAGILALGIGDTMASIIGKRYGRI 436 (510)
T ss_pred hcCCCchHHHHHHHHHhcccccCCceeHHHHHHHHhcccchhccCCCCCchhhhhhhhhheeeccchHHHHHHhhhhcce
Confidence 3555554333 33334455556788999999999999988543 1 122 3578999999999999999999999
Q ss_pred cccCCCCcChhHHHHHHHHHHHHHHHHHHHHhhcccc-ccchHHHHHHHHHHHHHHHHHhhcCCCCCCCcccchHHHHHH
Q 023579 194 KIFYNEKKSWAGSISMFVFGFLVSTGMLYFYSILGYY-QLDWIETLQRVALVSLVATVVESLPITEVVDDNISVPLASMV 272 (280)
Q Consensus 194 kl~~~~~KS~eGSla~fl~s~l~s~~~l~~f~~~g~~-~~~~~~~l~~~li~alvatlvEal~~~~~~dDNLtIPl~a~~ 272 (280)
||+ +.+||+||++|+.++.+++..... .+ +.|+. +..|+ ..+..+...++.|+++ .++||+.+|+....
T Consensus 437 RW~-~TkKTlEGT~Afivs~~iv~~ll~-i~-~~~v~~~~t~~----~~L~a~~~salLEa~T---~q~DNlllPl~~~i 506 (510)
T KOG2468|consen 437 RWS-GTKKTLEGTLAFIVSSFIVCLLLL-IF-KAGVFLSLTWW----QTLFACLLSALLEAYT---TQNDNLLLPLYMYI 506 (510)
T ss_pred ecC-CCcceeehhhHHHHHHHHHHHHHH-Hh-hcccccchHHH----HHHHHHHHHHHHHHhh---hccccchHHHHHHH
Confidence 998 569999999999999999887654 33 33432 23443 2455567778999996 48999999997654
Q ss_pred H
Q 023579 273 A 273 (280)
Q Consensus 273 ~ 273 (280)
+
T Consensus 507 l 507 (510)
T KOG2468|consen 507 L 507 (510)
T ss_pred H
Confidence 3
No 5
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=99.17 E-value=2.9e-10 Score=106.42 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=68.0
Q ss_pred cchHHHHHHHHHHHHHHhc----CC---chHHHHHHHHHHh-hhhHhhhhhcccCCccc-c-CCCCcChhHHHHHHHHHH
Q 023579 145 LRGPLYYVLMLILSALVFW----RD---SPVGVISLSMMCG-GDGIADVIGRRFGSMKI-F-YNEKKSWAGSISMFVFGF 214 (280)
Q Consensus 145 l~G~lyy~l~~~l~~llfw----~~---~piai~aIl~L~~-GDg~AalvGr~~Gr~kl-~-~~~~KS~eGSla~fl~s~ 214 (280)
..|.+|+.........+-. ++ .+..+..++++.| +|..|+++||++||||+ | .+|||||||++++++++.
T Consensus 122 ~~g~~~~~~~~~~~~~l~~~~~~~~~~~G~~~vl~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~ 201 (285)
T PRK11624 122 IFGVLTIVPFFWGMLALRAWHYDENHYSGAWWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAA 201 (285)
T ss_pred HHHHHHHHHHHHHHHHHHcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHH
Confidence 4577776554433332221 11 2233455555555 99999999999999999 3 899999999999999999
Q ss_pred HHHHHHHHHHhhccccccchHHHHHHHHHHHH---HHHHHhhcC
Q 023579 215 LVSTGMLYFYSILGYYQLDWIETLQRVALVSL---VATVVESLP 255 (280)
Q Consensus 215 l~s~~~l~~f~~~g~~~~~~~~~l~~~li~al---vatlvEal~ 255 (280)
+++..+..+.. . +.++...+..++++++ ++-++||.-
T Consensus 202 ~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~GDL~ES~l 241 (285)
T PRK11624 202 VISWLFGMWAP-L---DVAPVTLLICSIVAALASVLGDLTESMF 241 (285)
T ss_pred HHHHHHHHHHc-c---cccHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 98876643321 1 1122223333444444 444999974
No 6
>PLN02594 phosphatidate cytidylyltransferase
Probab=98.79 E-value=5.9e-08 Score=92.86 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=45.0
Q ss_pred HHHHHHHhhhhHhhhhhcccCCcccc-CCCCcChhHHHHHHHHHHHHHHHHHHHH
Q 023579 171 ISLSMMCGGDGIADVIGRRFGSMKIF-YNEKKSWAGSISMFVFGFLVSTGMLYFY 224 (280)
Q Consensus 171 ~aIl~L~~GDg~AalvGr~~Gr~kl~-~~~~KS~eGSla~fl~s~l~s~~~l~~f 224 (280)
..+.+...+|.+|+++|+++||||+. .+++|||||.++.++++.+.++++..++
T Consensus 129 l~~~lV~~nDi~AY~~G~~fGk~kL~~iSPkKTwEGfiGg~i~T~i~~~~~~~~~ 183 (342)
T PLN02594 129 LPASLIVINDIAAYLFGFFFGRTPLIKLSPKKTWEGFIGASVTTLISAFYLANIM 183 (342)
T ss_pred HHHHHHHHHhHHHHHHHHHhcCCCCCccCCCCchhhhHHHHHHHHHHHHHHHHHh
Confidence 33333444999999999999999985 8999999999999999999988775543
No 7
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=98.72 E-value=1.2e-07 Score=87.70 Aligned_cols=107 Identities=26% Similarity=0.274 Sum_probs=66.5
Q ss_pred cchHHHHHHHHHHHHHHhcC---CchH-HHHHHHHHHhhhhHhhhhhcccCCccc-c-CCCCcChhHHHHHHHHHHHHHH
Q 023579 145 LRGPLYYVLMLILSALVFWR---DSPV-GVISLSMMCGGDGIADVIGRRFGSMKI-F-YNEKKSWAGSISMFVFGFLVST 218 (280)
Q Consensus 145 l~G~lyy~l~~~l~~llfw~---~~pi-ai~aIl~L~~GDg~AalvGr~~Gr~kl-~-~~~~KS~eGSla~fl~s~l~s~ 218 (280)
..+..|+...+......++. +... ....++....+|..|+.+||++||||+ | .+++|||||.+++.+.+.+++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~ 187 (265)
T COG0575 108 LFGLLYVGVGLLALLPFRLGVLYSGLILLLLLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAV 187 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHH
Confidence 45677777665444433321 1111 222233334499999999999999986 4 8999999999999999988887
Q ss_pred HHHHHHhhccccccchHHHHHHHHHH---HHHHHHHhhc
Q 023579 219 GMLYFYSILGYYQLDWIETLQRVALV---SLVATVVESL 254 (280)
Q Consensus 219 ~~l~~f~~~g~~~~~~~~~l~~~li~---alvatlvEal 254 (280)
.+..+.+. ....+...+..+++. +.++-++||.
T Consensus 188 ~~~~~~~~---~~~~~~~~~~l~~~~~l~~~lGDL~eS~ 223 (265)
T COG0575 188 LVIFLLSS---LILNIWTLLILGLLLVLTSQLGDLFESY 223 (265)
T ss_pred HHHHHHhh---hhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 76544321 111222233333333 4444589954
No 8
>PLN02953 phosphatidate cytidylyltransferase
Probab=98.63 E-value=2.1e-07 Score=90.40 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=52.0
Q ss_pred hhhHhhhhhcccCCcccc-CCCCcChhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH---HHHHHHHHhhc
Q 023579 179 GDGIADVIGRRFGSMKIF-YNEKKSWAGSISMFVFGFLVSTGMLYFYSILGYYQLDWIETLQRVAL---VSLVATVVESL 254 (280)
Q Consensus 179 GDg~AalvGr~~Gr~kl~-~~~~KS~eGSla~fl~s~l~s~~~l~~f~~~g~~~~~~~~~l~~~li---~alvatlvEal 254 (280)
+|.+|+++|+++||||+. .+++|||||.+++++++.+++.++..++. + ...+...+..+++ .+.++-++|+.
T Consensus 281 ~Di~AY~~G~~fGk~kl~~ISPkKTwEG~iGGil~~vlv~~l~~~~l~---~-~~~~~~~i~lg~li~~~~~~GDL~eS~ 356 (403)
T PLN02953 281 TDTFAFLGGKAFGRTPLTSISPKKTWEGTFVGLVGCIAITILLSKSLS---W-PQSLFSSIAFGFLNFFGSVFGDLTESM 356 (403)
T ss_pred HHHHHHHHHHHhCCCCCCcCCCCCeeeeehhHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 899999999999999996 89999999999999999888776533321 1 1111122223333 35566699987
Q ss_pred C
Q 023579 255 P 255 (280)
Q Consensus 255 ~ 255 (280)
-
T Consensus 357 i 357 (403)
T PLN02953 357 I 357 (403)
T ss_pred H
Confidence 4
No 9
>PRK04032 hypothetical protein; Provisional
Probab=97.60 E-value=0.0002 Score=62.15 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=41.6
Q ss_pred hhccc-CCccccCCCCcChhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHH---HHHHhhcC
Q 023579 186 IGRRF-GSMKIFYNEKKSWAGSISMFVFGFLVSTGMLYFYSILGYYQLDWIETLQRVALVSLV---ATVVESLP 255 (280)
Q Consensus 186 vGr~~-Gr~kl~~~~~KS~eGSla~fl~s~l~s~~~l~~f~~~g~~~~~~~~~l~~~li~alv---atlvEal~ 255 (280)
.||++ +.+|+ .+++|||||.+++++.+.+.+.++..++.. . ..++...+..++++++. +-++||.-
T Consensus 22 ~g~~~~dg~~i-iSP~KTwEG~iGGv~~~~l~~~~~~~~~~~-~--~~~~~~~~~~g~li~v~~~~GDL~eS~i 91 (159)
T PRK04032 22 FGKTFVDGRRI-LGDGKTWRGLIGGILFGTLVGLIQNLLVPA-Y--IGALGVAIILAFLLSFGALLGDMLGSFI 91 (159)
T ss_pred CCCcCCCCCee-CCCCCcHHHhHHHHHHHHHHHHHHHHHHcc-c--hhHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 37777 44555 699999999999999999988766433221 0 01222233344444444 44889874
No 10
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=97.41 E-value=0.00054 Score=63.48 Aligned_cols=49 Identities=22% Similarity=0.178 Sum_probs=42.8
Q ss_pred HhhhhHhhhhhcccCCccc-c-CCCCcChhHHHHHHHHHHHHHHHHHHHHhh
Q 023579 177 CGGDGIADVIGRRFGSMKI-F-YNEKKSWAGSISMFVFGFLVSTGMLYFYSI 226 (280)
Q Consensus 177 ~~GDg~AalvGr~~Gr~kl-~-~~~~KS~eGSla~fl~s~l~s~~~l~~f~~ 226 (280)
=..|-+-++-|+.|||||+ | .+++||+||-+++.+...+.+..+. |+..
T Consensus 184 q~nDV~QYvwGk~fGk~Ki~P~vSPnKTveGl~GGilt~~~~~~~l~-~lTp 234 (303)
T COG4589 184 ELNDVAQYVWGKSFGKRKIVPKVSPNKTVEGLIGGILTTMIASAILG-LLTP 234 (303)
T ss_pred HHHHHHHHHHhhhcCCcccCCCcCCcchHHHHhhhHHHHHHHHHHHH-HhCC
Confidence 4599999999999999999 4 8999999999999999999887654 5544
No 11
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=96.72 E-value=0.0016 Score=63.85 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=39.5
Q ss_pred HhhhhHhhhhhcccCCccc-cCCCCcChhHHHHHHHHHHHHHHHHHHHH
Q 023579 177 CGGDGIADVIGRRFGSMKI-FYNEKKSWAGSISMFVFGFLVSTGMLYFY 224 (280)
Q Consensus 177 ~~GDg~AalvGr~~Gr~kl-~~~~~KS~eGSla~fl~s~l~s~~~l~~f 224 (280)
..+|=+|+++|.++||+++ ..+++|||||-+++.++.++.++.+-...
T Consensus 230 icnDi~AY~~Gf~fGktPLiklSPKKTwEGFiGg~~~tvv~~i~~s~vL 278 (432)
T KOG1440|consen 230 ICNDIFAYLFGFFFGKTPLIKLSPKKTWEGFIGGTFGTVVFGILFSYVL 278 (432)
T ss_pred eeCchHHHHHhhhhcCCcccccCCCCccchhhchhHHHHHHHHHHHHHh
Confidence 4499999999999999887 48999999999999777777766654433
No 12
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=96.47 E-value=0.14 Score=47.22 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=54.4
Q ss_pred HHHHHHHHHhhhhHhhhhhcccCCc--------ccc--CCCCcChhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHH
Q 023579 169 GVISLSMMCGGDGIADVIGRRFGSM--------KIF--YNEKKSWAGSISMFVFGFLVSTGMLYFYSILGYYQLDWIETL 238 (280)
Q Consensus 169 ai~aIl~L~~GDg~AalvGr~~Gr~--------kl~--~~~~KS~eGSla~fl~s~l~s~~~l~~f~~~g~~~~~~~~~l 238 (280)
++++-+.-+-+|++|+=+|..++|+ |.| .|..=|++|+++.++++++++...+. . +..+ +. .+
T Consensus 114 ~f~~s~A~a~aDT~ASEiG~ls~~~p~lItt~k~V~~GT~GgVS~~Gt~As~~Ga~~I~~~~~~-~---~~~~--~~-~~ 186 (237)
T TIGR00297 114 GYVASVATALSDTMASEIGKAYGKNPRLITTLQRVEPGTDGAISVEGTLAGFAGALAIALLGYL-L---GLIS--FK-GI 186 (237)
T ss_pred HHHHHHHHHHcchHHHhhhhccCCCCeEeecCccCCCCCCCcccHHHHHHHHHHHHHHHHHHHH-H---hhcc--hH-HH
Confidence 3455555677999999999999873 222 56778999999999999998854321 1 2211 21 22
Q ss_pred HHHHHHHHHHHHHhhc
Q 023579 239 QRVALVSLVATVVESL 254 (280)
Q Consensus 239 ~~~li~alvatlvEal 254 (280)
....+.+++++++|++
T Consensus 187 ~~~~~aG~~Gsl~DSl 202 (237)
T TIGR00297 187 LFSTLAAFAGTNLDSL 202 (237)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456677888888885
No 13
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=95.83 E-value=0.9 Score=41.65 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhhhHhhhhhcccCCcc--------cc--CCCCcChhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHH
Q 023579 169 GVISLSMMCGGDGIADVIGRRFGSMK--------IF--YNEKKSWAGSISMFVFGFLVSTGMLYFYSILGYYQLDWIETL 238 (280)
Q Consensus 169 ai~aIl~L~~GDg~AalvGr~~Gr~k--------l~--~~~~KS~eGSla~fl~s~l~s~~~l~~f~~~g~~~~~~~~~l 238 (280)
+.++-+.-+-+|++|+=+|..++++. .| .|..=|++|+++.++++++++........ .+.. .+
T Consensus 109 ~~~~s~A~a~aDTwASEiG~ls~~~P~lItt~k~V~~Gt~GgVS~lGt~as~~Ga~~Ia~~~~~~~~------~~~~-~~ 181 (226)
T PF01940_consen 109 AFLGSIAAANADTWASEIGVLSKGPPRLITTFKRVPPGTSGGVSLLGTLASLAGALLIALVAFLLGL------ISFP-LV 181 (226)
T ss_pred HHHHHHHHHhhhHHHHhhhhhcCCCCeEeeCCcCCCCCCCCeechHHHHHHHHHHHHHHHHHHHHHc------cchH-HH
Confidence 44555556779999999998887642 22 46677999999999999999876543321 1121 12
Q ss_pred HHHHHHHHHHHHHhhcCC-----CCCCCcccchHHHHHHHHHH
Q 023579 239 QRVALVSLVATVVESLPI-----TEVVDDNISVPLASMVAAYL 276 (280)
Q Consensus 239 ~~~li~alvatlvEal~~-----~~~~dDNLtIPl~a~~~~~l 276 (280)
....+.+++++++|++-- +....||=.|=+.+.++..+
T Consensus 182 ~~~~~~G~~Gsl~DSlLGAtlQ~G~~~l~N~~VN~lstl~~al 224 (226)
T PF01940_consen 182 LLIALAGFLGSLLDSLLGATLQRGRGWLNNDAVNFLSTLIGAL 224 (226)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhCCCCCcChhHHHHHHHHHHHH
Confidence 234555666666666521 12357787777776665543
No 14
>COG1836 Predicted membrane protein [Function unknown]
Probab=95.57 E-value=0.37 Score=44.54 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=37.7
Q ss_pred HHHhhhhHhhhhhcccCCccc--------c--CCCCcChhHHHHHHHHHHHHHHHHH
Q 023579 175 MMCGGDGIADVIGRRFGSMKI--------F--YNEKKSWAGSISMFVFGFLVSTGML 221 (280)
Q Consensus 175 ~L~~GDg~AalvGr~~Gr~kl--------~--~~~~KS~eGSla~fl~s~l~s~~~l 221 (280)
..+-.|++|+=+|+.+||+.. + .++.-|++|+++.+++++++++...
T Consensus 129 Ata~aDT~ASEiG~~~~~~p~lITtfkrV~~Gt~GaVS~~GelAav~Ga~iIal~~~ 185 (247)
T COG1836 129 ATANADTLASEIGKAYGKRPRLITTFKRVEPGTSGAVSLVGELAAVAGAFIIALLSY 185 (247)
T ss_pred HHHhhhHHHHHHhHhhCCCeEEEEeeeEcCCCCCCccchhhhHHHHHHHHHHHHHHH
Confidence 445699999999999988532 1 4567799999999999999987543
No 15
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=90.67 E-value=0.63 Score=41.11 Aligned_cols=58 Identities=22% Similarity=0.178 Sum_probs=35.8
Q ss_pred CCCCcChhHHHHHHHHHHHHHHHHHHHHhhcc----ccccchHHHHHHHHHHHHHHHHHhhcC
Q 023579 197 YNEKKSWAGSISMFVFGFLVSTGMLYFYSILG----YYQLDWIETLQRVALVSLVATVVESLP 255 (280)
Q Consensus 197 ~~~~KS~eGSla~fl~s~l~s~~~l~~f~~~g----~~~~~~~~~l~~~li~alvatlvEal~ 255 (280)
.+++|||+|.+++.+.+.+++.+.. +....+ ++..+....+..++..++.+.+=|...
T Consensus 44 lGdgKTwrG~i~gvl~g~l~g~i~~-~l~~~~~~~~~~~~~~~~~~~~g~ll~~gamlGDl~~ 105 (175)
T PF01864_consen 44 LGDGKTWRGFIGGVLAGTLVGIIQG-LLLPLSIFALYFYGSLFFNLLLGFLLGLGAMLGDLPG 105 (175)
T ss_pred cCCCCeEEeeeHHHHHHHHHHHHHH-HHhhhcccccccccchHHHHHHHHHHHHHHHHhHHHH
Confidence 5899999999999999999887542 221110 011222223345566677777766653
No 16
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=68.68 E-value=4.3 Score=34.75 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhc
Q 023579 101 TEARYFAALVPLVNCLRLVINGLSLVKDDGLIKSVTR 137 (280)
Q Consensus 101 ~~~~~~aa~vP~l~~lrl~~~Gl~~~~~~~lv~sl~R 137 (280)
....-++...|++..+...+.--++.|||+++|++.|
T Consensus 112 ~~~~~~g~~lp~vaii~~~LA~r~I~kDEkLVrS~DR 148 (149)
T PF14126_consen 112 TFSFGIGFFLPLVAIIFLWLANRAIKKDEKLVRSADR 148 (149)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Confidence 3446668889999877666666788999999999988
No 17
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=54.92 E-value=62 Score=26.04 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=30.1
Q ss_pred HHHHHHhhhhHhhhhhcccCCccccCCCCcCh-hHHHHHHHHHHHHHHH
Q 023579 172 SLSMMCGGDGIADVIGRRFGSMKIFYNEKKSW-AGSISMFVFGFLVSTG 219 (280)
Q Consensus 172 aIl~L~~GDg~AalvGr~~Gr~kl~~~~~KS~-eGSla~fl~s~l~s~~ 219 (280)
.+...+++.|.+.++|+.+|++|.. +-+|.. .+.....+.+.+.+..
T Consensus 42 ~~~~~g~~~a~~~~~s~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF01554_consen 42 FMLIFGLATALQILISQNIGAGDYK-RAKKVVRQGLLLSLIIGLLLSLV 89 (162)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSTT-TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccccccceeeccccccccc-ccccccccccccchhcccchhhh
Confidence 3456788999999999999998874 223332 3434444445544443
No 18
>PF07281 INSIG: Insulin-induced protein (INSIG)
Probab=44.52 E-value=1e+02 Score=27.61 Aligned_cols=61 Identities=18% Similarity=0.248 Sum_probs=40.8
Q ss_pred HhhhhhcccCCccccCCCCcChhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHhhcC
Q 023579 182 IADVIGRRFGSMKIFYNEKKSWAGSISMFVFGFLVSTGMLYFYSILGYYQLDWIETLQRVALVSLVATVVESLP 255 (280)
Q Consensus 182 ~AalvGr~~Gr~kl~~~~~KS~eGSla~fl~s~l~s~~~l~~f~~~g~~~~~~~~~l~~~li~alvatlvEal~ 255 (280)
.++.+|-.++-+|+++.+ +.+-+++..+.+... ++.| |.+.. .+..+.+++++++++|..-
T Consensus 88 i~~FvGi~~airkl~w~s--~~Q~s~~lalln~~L----W~lf------DrT~s-Gf~ls~~va~~g~~~~~~l 148 (193)
T PF07281_consen 88 IGAFVGISFAIRKLPWSS--SLQASITLALLNPGL----WWLF------DRTRS-GFLLSTAVALLGTLIEYGL 148 (193)
T ss_pred HHHHHHHHHHHhhCCCCc--HHHHHHHHHHHHHHH----HHHh------CCchh-HHHHHHHHHHHHHHhheee
Confidence 345578888888998766 677777766665443 2222 33443 4556888899999888763
No 19
>KOG4491 consensus Predicted membrane protein [Function unknown]
Probab=39.65 E-value=2.4e+02 Score=26.65 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=56.8
Q ss_pred hhhhhhhcccccC-c----ccchHHHHHHHHHHHHHHhcCCch-------------HHHHHHHHHHhhhhHhhhhhcccC
Q 023579 130 GLIKSVTREGNPK-E----LLRGPLYYVLMLILSALVFWRDSP-------------VGVISLSMMCGGDGIADVIGRRFG 191 (280)
Q Consensus 130 ~lv~sl~R~ge~~-e----ll~G~lyy~l~~~l~~llfw~~~p-------------iai~aIl~L~~GDg~AalvGr~~G 191 (280)
+.+++..||++.+ + +-+|-+---+.+..++.--|.+.+ .++++-+..|-||..++-+|.-.-
T Consensus 107 ~r~~s~~~eg~GQRNWvQVlCNggva~~Lally~~~~G~ge~~vDf~~~y~~swl~~~~~~a~ACcnGDTWsSElG~VLS 186 (323)
T KOG4491|consen 107 KRLDSEYKEGLGQRNWVQVLCNGGVATELALLYMIENGPGEIPVDFSKQYSASWLCLSLLAALACCNGDTWSSELGPVLS 186 (323)
T ss_pred HHHHHHHhhccCccchhhhhcCCcchHHHHHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHhcCCChhhhhhcchhc
Confidence 5566777777533 2 345554444444433333344321 134455556779999999994433
Q ss_pred C---------cccc--CCCCcChhHHHHHHHHHHHHHHHHH
Q 023579 192 S---------MKIF--YNEKKSWAGSISMFVFGFLVSTGML 221 (280)
Q Consensus 192 r---------~kl~--~~~~KS~eGSla~fl~s~l~s~~~l 221 (280)
+ +|.| .|++-|..|-++-.+++..+++.++
T Consensus 187 ~~~PrlItTw~~Vp~GTNGGVt~~Gl~~sLlgGt~VG~~yf 227 (323)
T KOG4491|consen 187 KSSPRLITTWEKVPVGTNGGVTVVGLVSSLLGGTFVGIAYF 227 (323)
T ss_pred cCCCceEEeeeecccCCCCCEeeHHHHHHHhccceeehHhh
Confidence 2 2333 5788899999999998888887654
No 20
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=34.94 E-value=1.8e+02 Score=22.45 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=17.9
Q ss_pred HHHHHHHhhhhHhhhhhcccCCc
Q 023579 171 ISLSMMCGGDGIADVIGRRFGSM 193 (280)
Q Consensus 171 ~aIl~L~~GDg~AalvGr~~Gr~ 193 (280)
++.+-...||-.+..+||++|++
T Consensus 22 ~~~~g~~~g~~~~y~lgr~~~~~ 44 (123)
T PF09335_consen 22 IATLGAVLGSLLAYLLGRYFGRR 44 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 44445566999999999999953
No 21
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=31.78 E-value=3.8e+02 Score=23.96 Aligned_cols=113 Identities=21% Similarity=0.131 Sum_probs=65.6
Q ss_pred hhhcccceecCCCchhHHHH-HHHHHHHHHHHHHHhhccccchhhhhhhhhcccccCcccchHHHHHHHHHHHHHHhcCC
Q 023579 87 NLSQRKLIQQNSTSTEARYF-AALVPLVNCLRLVINGLSLVKDDGLIKSVTREGNPKELLRGPLYYVLMLILSALVFWRD 165 (280)
Q Consensus 87 el~~R~~~~~~s~~~~~~~~-aa~vP~l~~lrl~~~Gl~~~~~~~lv~sl~R~ge~~ell~G~lyy~l~~~l~~llfw~~ 165 (280)
|..+|++-...+....+.|. ++.+-.+.++|= -.+.+..|+.-+-|.+.+|..|.++..+..+ .
T Consensus 44 Ey~~~~Ltk~~gg~~kaCYmLaatIf~lgivRd-----------~~y~~Al~~QPt~~~~~~p~~~~lg~alfgl----G 108 (208)
T KOG4142|consen 44 EYKTRKLTKAFGGPYKACYMLAATIFLLGIVRD-----------HCYTQALLSQPTMESLDTPAAYSLGLALFGL----G 108 (208)
T ss_pred HhhHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhCCcchhccChHHHHHHHHHHhh----h
Confidence 55567776666666677776 555555555542 3455566676666778899999887655332 2
Q ss_pred chHHHHHHHHHHh-----hhhHhhhhhcccCCccccCCCCcChhHHHHHHHHHH
Q 023579 166 SPVGVISLSMMCG-----GDGIADVIGRRFGSMKIFYNEKKSWAGSISMFVFGF 214 (280)
Q Consensus 166 ~piai~aIl~L~~-----GDg~AalvGr~~Gr~kl~~~~~KS~eGSla~fl~s~ 214 (280)
......++.-+++ ||=+.-+.-.|.-.-.+..+++--..||-..|++-.
T Consensus 109 ~VLVLSSmykLG~~GTyLGDYFGiL~~eRVtgFPFNv~dNPMY~GSTl~fLg~A 162 (208)
T KOG4142|consen 109 VVLVLSSMYKLGFAGTYLGDYFGILKEERVTGFPFNVLDNPMYWGSTLNFLGWA 162 (208)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhhhhhhcccccccccCCcccccchHHHHHHH
Confidence 2233445555544 343333333333222222567778889988887654
No 22
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=31.67 E-value=2.4e+02 Score=27.93 Aligned_cols=49 Identities=6% Similarity=0.108 Sum_probs=32.4
Q ss_pred HHHHHHhhhhHhhhhhcccCCccccCCCCcChhHHHHHHHHHHHHHHHH
Q 023579 172 SLSMMCGGDGIADVIGRRFGSMKIFYNEKKSWAGSISMFVFGFLVSTGM 220 (280)
Q Consensus 172 aIl~L~~GDg~AalvGr~~Gr~kl~~~~~KS~eGSla~fl~s~l~s~~~ 220 (280)
-+..++++-+.+.++|+.+|.++..--++-.+.+....++.+.+.+..+
T Consensus 290 ~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~ 338 (455)
T COG0534 290 FMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLL 338 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688999999999999998875223445555555555555544443
No 23
>COG4803 Predicted membrane protein [Function unknown]
Probab=29.51 E-value=30 Score=30.23 Aligned_cols=62 Identities=21% Similarity=0.206 Sum_probs=34.9
Q ss_pred ccCCccccCCCCcChhHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCCCCCCCcccc
Q 023579 189 RFGSMKIFYNEKKSWAGSISMFVFGFLVSTGMLYFYSILGYYQLDWIETLQRVALVSLVATVVESLPITEVVDDNIS 265 (280)
Q Consensus 189 ~~Gr~kl~~~~~KS~eGSla~fl~s~l~s~~~l~~f~~~g~~~~~~~~~l~~~li~alvatlvEal~~~~~~dDNLt 265 (280)
--||.|+.-.-+-|-.|.+++-.=+.+++++|+. +|. ...++|..+++.-++.- .-+|||+.
T Consensus 45 ~~gkvklkQ~~Nlt~aGa~sGafWG~LiGllFl~----------Pl~----G~avGAa~GAl~g~l~D-vGIdDdFi 106 (170)
T COG4803 45 EDGKVKLKQLMNLTGAGAVSGAFWGMLIGLLFLN----------PLL----GMAVGAASGALSGSLTD-VGIDDDFI 106 (170)
T ss_pred CCCCeeHHHHhhhhhhccccccHHHHHHHHHHHh----------HHH----HHHHHHhhhhhccceee-cCcCHHHH
Confidence 3477676533456777777765556666655431 232 23344555556666553 34789974
No 24
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=28.44 E-value=2.1e+02 Score=23.91 Aligned_cols=50 Identities=6% Similarity=0.043 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHhhc
Q 023579 205 GSISMFVFGFLVSTGMLYFYSILGYYQLDWIETLQRVALVSLVATVVESL 254 (280)
Q Consensus 205 GSla~fl~s~l~s~~~l~~f~~~g~~~~~~~~~l~~~li~alvatlvEal 254 (280)
+++.=++++++.++.+.+|....-+...+...-++.+++++++..++|.+
T Consensus 80 s~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~ 129 (142)
T PF11712_consen 80 STVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVV 129 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444433321110123333445677888888888875
No 25
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=25.87 E-value=1.2e+02 Score=23.61 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=11.4
Q ss_pred HhhhhhcccCCcccc
Q 023579 182 IADVIGRRFGSMKIF 196 (280)
Q Consensus 182 ~AalvGr~~Gr~kl~ 196 (280)
++|-+|+|.||+|+.
T Consensus 19 ~GD~iG~kvGKkrls 33 (79)
T PF11283_consen 19 LGDRIGSKVGKKRLS 33 (79)
T ss_pred HHHHHHHHHhHHHhh
Confidence 445788999998874
No 26
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=22.21 E-value=68 Score=20.29 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.6
Q ss_pred CCcccchHHHHHHHHHHH
Q 023579 260 VDDNISVPLASMVAAYLS 277 (280)
Q Consensus 260 ~dDNLtIPl~a~~~~~l~ 277 (280)
.-=|+||-+.+.+++|++
T Consensus 8 l~lnftvvlitvilmwll 25 (31)
T PF05366_consen 8 LFLNFTVVLITVILMWLL 25 (31)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 456999999999999986
No 27
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=21.19 E-value=63 Score=28.80 Aligned_cols=23 Identities=39% Similarity=0.375 Sum_probs=17.7
Q ss_pred HHHHHhhhhHhhhhhcccCCccc
Q 023579 173 LSMMCGGDGIADVIGRRFGSMKI 195 (280)
Q Consensus 173 Il~L~~GDg~AalvGr~~Gr~kl 195 (280)
.+-...||...+.+||++|++.+
T Consensus 64 ~lga~lGd~i~Y~iGr~~G~~~l 86 (208)
T COG0586 64 TLGALLGDLISYWIGRRFGRKLL 86 (208)
T ss_pred HHHHHHHHHHHHHHHHHhcHHHH
Confidence 33334599999999999997644
Done!