Query 023579
Match_columns 280
No_of_seqs 207 out of 1080
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 09:15:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jdm_A Sarcolipin; helix, memb 7.4 2.1E+02 0.0071 17.4 1.6 18 260-277 8-25 (31)
2 1qle_D Cytochrome AA3, ccytoch 6.4 2.5E+02 0.0085 18.2 1.8 22 198-219 12-33 (43)
3 3mkt_A Multi antimicrobial ext 5.5 8.3E+02 0.028 21.4 5.5 24 173-196 288-311 (460)
4 3s8f_C Cytochrome C oxidase po 4.3 7.7E+02 0.026 15.2 3.5 24 69-92 11-34 (34)
5 3rlb_A THIT; S-component, ECF 3.9 1.1E+03 0.039 19.5 4.8 19 202-220 124-142 (192)
6 1m56_D Cytochrome C oxidase; m 3.9 6.2E+02 0.021 16.9 2.5 22 198-219 20-41 (51)
7 2glz_A Similar to formylmethan 3.1 5.1E+02 0.018 20.5 1.8 21 176-196 55-75 (153)
8 2zjs_E Preprotein translocase 2.9 1.3E+03 0.043 15.3 4.0 26 194-220 20-45 (60)
9 1jh4_B PAIP1, polyadenylate-bi 2.8 5.7E+02 0.02 14.9 1.2 14 4-18 5-18 (26)
10 4ev6_A Magnesium transport pro 2.7 1.9E+03 0.066 19.0 5.3 45 182-230 295-339 (339)
No 1
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=7.44 E-value=2.1e+02 Score=17.36 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=14.5
Q ss_pred CCcccchHHHHHHHHHHH
Q 023579 260 VDDNISVPLASMVAAYLS 277 (280)
Q Consensus 260 ~dDNLtIPl~a~~~~~l~ 277 (280)
.-=|+|+-+.+.+++|++
T Consensus 8 Lf~NFt~vLI~vlLi~ll 25 (31)
T 1jdm_A 8 LFLNFTIVLITVILMWLL 25 (31)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445899999998888875
No 2
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=6.41 E-value=2.5e+02 Score=18.24 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=15.2
Q ss_pred CCCcChhHHHHHHHHHHHHHHH
Q 023579 198 NEKKSWAGSISMFVFGFLVSTG 219 (280)
Q Consensus 198 ~~~KS~eGSla~fl~s~l~s~~ 219 (280)
..+||++|.+.+---+.++.+.
T Consensus 12 ~hE~Ty~gFi~~~k~gt~~~~~ 33 (43)
T 1qle_D 12 HQQATFAGFIKGATWVSILSIA 33 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999876655554443
No 3
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=5.51 E-value=8.3e+02 Score=21.43 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=18.9
Q ss_pred HHHHHhhhhHhhhhhcccCCcccc
Q 023579 173 LSMMCGGDGIADVIGRRFGSMKIF 196 (280)
Q Consensus 173 Il~L~~GDg~AalvGr~~Gr~kl~ 196 (280)
+...+++.+....+|+.+|+++..
T Consensus 288 ~~~~~~~~a~~p~i~~~~g~~~~~ 311 (460)
T 3mkt_A 288 MFPMSIGAAVSIRVGHKLGEQDTK 311 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHH
Confidence 444577888999999999987664
No 4
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=4.26 E-value=7.7e+02 Score=15.21 Aligned_cols=24 Identities=8% Similarity=-0.186 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 023579 69 GATAAVLVGAYGLVLSFDNLSQRK 92 (280)
Q Consensus 69 ~a~~~~~~~~~~~~~~~~el~~R~ 92 (280)
..+++++.+...|+..|.-...|+
T Consensus 11 ~V~ilg~~I~i~W~~vf~lFl~Rg 34 (34)
T 3s8f_C 11 VILVLTLTILVFWLGVYAVFFARG 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHeeeecCC
Confidence 344455555777888887766664
No 5
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=3.95 E-value=1.1e+03 Score=19.50 Aligned_cols=19 Identities=11% Similarity=0.380 Sum_probs=12.6
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 023579 202 SWAGSISMFVFGFLVSTGM 220 (280)
Q Consensus 202 S~eGSla~fl~s~l~s~~~ 220 (280)
+..|+++++++.++.++.+
T Consensus 124 ~~ig~~~r~~~~~isgvvf 142 (192)
T 3rlb_A 124 TFVAVLLKYFFHFIAGIIF 142 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556777777777776643
No 6
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=3.90 E-value=6.2e+02 Score=16.89 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=15.4
Q ss_pred CCCcChhHHHHHHHHHHHHHHH
Q 023579 198 NEKKSWAGSISMFVFGFLVSTG 219 (280)
Q Consensus 198 ~~~KS~eGSla~fl~s~l~s~~ 219 (280)
..+||++|.+.+---+.++.+.
T Consensus 20 ~he~Ty~gFi~~~k~gt~~~~~ 41 (51)
T 1m56_D 20 QQEKTFAGFVRMVTWAAVVIVA 41 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999876665555443
No 7
>2glz_A Similar to formylmethanofuran dehydrogenase subun; structural genomics, joint center for structural genomics; HET: MSE; 1.45A {Desulfitobacterium hafniense} SCOP: d.81.3.1
Probab=3.14 E-value=5.1e+02 Score=20.52 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=17.3
Q ss_pred HHhhhhHhhhhhcccCCcccc
Q 023579 176 MCGGDGIADVIGRRFGSMKIF 196 (280)
Q Consensus 176 L~~GDg~AalvGr~~Gr~kl~ 196 (280)
-|.-|++-.+-|-.+||..+.
T Consensus 55 ~C~~Daiq~ltGct~Gkg~L~ 75 (153)
T 2glz_A 55 SCALDAIQVLNKATIGRHALI 75 (153)
T ss_dssp STTHHHHHHHTCCCTTTTCEE
T ss_pred CcccCceeeccCcEecCCCeE
Confidence 466899999999999997663
No 8
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=2.86 E-value=1.3e+03 Score=15.28 Aligned_cols=26 Identities=8% Similarity=0.153 Sum_probs=15.0
Q ss_pred cccCCCCcChhHHHHHHHHHHHHHHHH
Q 023579 194 KIFYNEKKSWAGSISMFVFGFLVSTGM 220 (280)
Q Consensus 194 kl~~~~~KS~eGSla~fl~s~l~s~~~ 220 (280)
.+| +++..+.-++..++.+.+.++.+
T Consensus 20 ~WP-tr~e~~~~t~vViv~v~i~~~~~ 45 (60)
T 2zjs_E 20 TWP-TREQVVEGTQAILLFTLAFMVIL 45 (60)
T ss_dssp CCS-CSSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 44445556666666666666544
No 9
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=2.83 E-value=5.7e+02 Score=14.91 Aligned_cols=14 Identities=14% Similarity=-0.009 Sum_probs=10.1
Q ss_pred cccccccCCCCCCCc
Q 023579 4 SLSLLSRHPISGRHV 18 (280)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (280)
++|..+|.|.|. |+
T Consensus 5 ~LS~~ApeF~Ps-gy 18 (26)
T 1jh4_B 5 KLSVNAPEFYPS-GY 18 (26)
T ss_dssp CSSCCCSCCCCT-TC
T ss_pred ccCcCCceeccC-cc
Confidence 577888888774 44
No 10
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=2.66 E-value=1.9e+03 Score=19.02 Aligned_cols=45 Identities=13% Similarity=0.307 Sum_probs=0.0
Q ss_pred HhhhhhcccCCccccCCCCcChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 023579 182 IADVIGRRFGSMKIFYNEKKSWAGSISMFVFGFLVSTGMLYFYSILGYY 230 (280)
Q Consensus 182 ~AalvGr~~Gr~kl~~~~~KS~eGSla~fl~s~l~s~~~l~~f~~~g~~ 230 (280)
+|++.|.+|+.... .+.--|.....+.++++++++++||..-|..
T Consensus 295 IaGiyGMNf~~mPe----l~~~~gy~~~l~~m~~~~~~~~~~fkrk~WL 339 (339)
T 4ev6_A 295 ITGIYGMNFSYLPL----ANNPQGFWLVMALMVVIIMIFVYIFRRSGWI 339 (339)
T ss_dssp HHHHTTCCCSCCTT----SSCTTHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHhhccCcCCCCCC----ccCchHHHHHHHHHHHHHHHHHHHHHHcCCC
Done!