Query 023579
Match_columns 280
No_of_seqs 207 out of 1080
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 09:15:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023579.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023579hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmec1 f.23.9.1 (C:2-34) Bact 16.6 93 0.0067 17.5 4.1 26 145-174 4-29 (33)
2 d1m56d_ f.23.8.1 (D:) Bacteria 14.7 45 0.0033 20.3 2.1 31 188-219 2-32 (42)
3 d1gjsa_ a.8.1.2 (A:) IgG bindi 6.5 35 0.0025 22.6 -0.9 12 197-208 44-55 (65)
4 d1qled_ f.23.8.1 (D:) Bacteria 6.5 1.5E+02 0.011 17.9 2.3 20 199-218 13-32 (43)
5 d1rh1a2 f.1.1.1 (A:313-511) Co 3.3 9.2E+02 0.067 18.5 5.7 15 245-264 175-189 (199)
6 d1v54l_ f.23.6.1 (L:) Mitochon 3.2 4.3E+02 0.031 15.9 2.7 18 167-184 17-34 (46)
7 d2gvia1 d.81.3.1 (A:1-168) Unc 2.8 3.1E+02 0.022 20.4 2.1 21 176-196 60-80 (168)
8 d2j5ya1 a.8.1.2 (A:1-53) PAB { 2.6 1.4E+02 0.01 18.7 -0.2 11 197-207 32-42 (53)
9 d2glza1 d.81.3.1 (A:3-151) Fwd 2.6 3.1E+02 0.022 20.3 1.8 21 176-196 52-72 (149)
10 d2uuia1 f.56.1.1 (A:2-147) Leu 2.4 4.8E+02 0.035 18.8 2.8 34 181-214 82-115 (146)
No 1
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=16.64 E-value=93 Score=17.53 Aligned_cols=26 Identities=42% Similarity=0.828 Sum_probs=17.9
Q ss_pred cchHHHHHHHHHHHHHHhcCCchHHHHHHH
Q 023579 145 LRGPLYYVLMLILSALVFWRDSPVGVISLS 174 (280)
Q Consensus 145 l~G~lyy~l~~~l~~llfw~~~piai~aIl 174 (280)
..|.+-..+.+.+.+++|| .++.+++
T Consensus 4 p~gal~vi~il~l~ilvfw----~gv~avf 29 (33)
T d1xmec1 4 PKGALAVILVLTLTILVFW----LGVYAVF 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHH----HHHHHHH
Confidence 4688777777778788888 3555443
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=14.72 E-value=45 Score=20.34 Aligned_cols=31 Identities=29% Similarity=0.461 Sum_probs=18.8
Q ss_pred cccCCccccCCCCcChhHHHHHHHHHHHHHHH
Q 023579 188 RRFGSMKIFYNEKKSWAGSISMFVFGFLVSTG 219 (280)
Q Consensus 188 r~~Gr~kl~~~~~KS~eGSla~fl~s~l~s~~ 219 (280)
.+-|...+. .++||.+|.+-+-.=..++.+.
T Consensus 2 HkHG~MDi~-vQEKTF~gFik~~t~~~i~~i~ 32 (42)
T d1m56d_ 2 HVAGSMDIT-QQEKTFAGFVRMVTWAAVVIVA 32 (42)
T ss_dssp CCTTCSCCH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344555443 3689999998775544444433
No 3
>d1gjsa_ a.8.1.2 (A:) IgG binding protein G {Streptococcus sp., group G [TaxId: 1306]}
Probab=6.48 E-value=35 Score=22.63 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=9.9
Q ss_pred CCCCcChhHHHH
Q 023579 197 YNEKKSWAGSIS 208 (280)
Q Consensus 197 ~~~~KS~eGSla 208 (280)
+|+.||+||--+
T Consensus 44 IN~AKTVEGV~a 55 (65)
T d1gjsa_ 44 INNAKTVEGVKA 55 (65)
T ss_dssp HHTCCSHHHHHH
T ss_pred HhccchHHHHHH
Confidence 689999999654
No 4
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=6.46 E-value=1.5e+02 Score=17.91 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=13.6
Q ss_pred CCcChhHHHHHHHHHHHHHH
Q 023579 199 EKKSWAGSISMFVFGFLVST 218 (280)
Q Consensus 199 ~~KS~eGSla~fl~s~l~s~ 218 (280)
++||.+|.+-+-.=..++.+
T Consensus 13 QEkTF~gFi~~~t~~~i~~i 32 (43)
T d1qled_ 13 QQATFAGFIKGATWVSILSI 32 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58999999877554444443
No 5
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.27 E-value=9.2e+02 Score=18.49 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=8.8
Q ss_pred HHHHHHHhhcCCCCCCCccc
Q 023579 245 SLVATVVESLPITEVVDDNI 264 (280)
Q Consensus 245 alvatlvEal~~~~~~dDNL 264 (280)
.++.+++-++ +|||+
T Consensus 175 iii~~~v~al-----Idd~~ 189 (199)
T d1rh1a2 175 VVIAGAIGAF-----IDDKF 189 (199)
T ss_dssp HHHHHHHHHT-----TCSHH
T ss_pred HHHHHHHHHH-----hCHHH
Confidence 3555556555 57775
No 6
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.24 E-value=4.3e+02 Score=15.87 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHhhhhHhh
Q 023579 167 PVGVISLSMMCGGDGIAD 184 (280)
Q Consensus 167 piai~aIl~L~~GDg~Aa 184 (280)
.+.+.+++++-+|-|+|+
T Consensus 17 k~rLla~m~~~fGsgfa~ 34 (46)
T d1v54l_ 17 KWRLLAMMTLFFGSGFAA 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccc
Confidence 345566666666666664
No 7
>d2gvia1 d.81.3.1 (A:1-168) Uncharacterized protein Ta1109 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=2.82 E-value=3.1e+02 Score=20.41 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=16.6
Q ss_pred HHhhhhHhhhhhcccCCcccc
Q 023579 176 MCGGDGIADVIGRRFGSMKIF 196 (280)
Q Consensus 176 L~~GDg~AalvGr~~Gr~kl~ 196 (280)
-|.-|++-.+-|-.+||..+.
T Consensus 60 ~C~~Davq~ltGcT~Gkg~L~ 80 (168)
T d2gvia1 60 GCFNDGAQAATGCTYGKGLFS 80 (168)
T ss_dssp THHHHHHHHHHSCCTTTTCEE
T ss_pred ccHHhHHHHHhcccccCCceE
Confidence 466799999999999887653
No 8
>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId: 1260]}
Probab=2.61 E-value=1.4e+02 Score=18.66 Aligned_cols=11 Identities=18% Similarity=0.045 Sum_probs=8.6
Q ss_pred CCCCcChhHHH
Q 023579 197 YNEKKSWAGSI 207 (280)
Q Consensus 197 ~~~~KS~eGSl 207 (280)
+|+.||+||-=
T Consensus 32 InkaKTVEgV~ 42 (53)
T d2j5ya1 32 INKAKTVEEVN 42 (53)
T ss_dssp HHHCCSHHHHH
T ss_pred HHhhhhHHHHH
Confidence 57889999854
No 9
>d2glza1 d.81.3.1 (A:3-151) FwdE-like protein DSY1837 (Dhaf_2201) {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=2.57 E-value=3.1e+02 Score=20.32 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=17.7
Q ss_pred HHhhhhHhhhhhcccCCcccc
Q 023579 176 MCGGDGIADVIGRRFGSMKIF 196 (280)
Q Consensus 176 L~~GDg~AalvGr~~Gr~kl~ 196 (280)
-|.-|++-.+-|-.+||..+.
T Consensus 52 ~C~~Davq~~tgcT~Gk~~L~ 72 (149)
T d2glza1 52 SCALDAIQVLNKATIGRHALI 72 (149)
T ss_dssp STTHHHHHHHTCCCTTTTCEE
T ss_pred CchHhHHHHHHCCCcCCCceE
Confidence 377899999999999987664
No 10
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.44 E-value=4.8e+02 Score=18.81 Aligned_cols=34 Identities=9% Similarity=-0.141 Sum_probs=16.1
Q ss_pred hHhhhhhcccCCccccCCCCcChhHHHHHHHHHH
Q 023579 181 GIADVIGRRFGSMKIFYNEKKSWAGSISMFVFGF 214 (280)
Q Consensus 181 g~AalvGr~~Gr~kl~~~~~KS~eGSla~fl~s~ 214 (280)
|.+-++||..=-.-+-.+++|...|...++...+
T Consensus 82 G~~~~vgRi~ha~gy~~~~~kr~~g~~~~~~~~~ 115 (146)
T d2uuia1 82 GLVYLFARLRYFQGYARSAQLRLAPLYASARALW 115 (146)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCcccCCcCchHHHHHHH
Confidence 3555666644111111245676666555444433
Done!