RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023579
(280 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 1e-05
Identities = 47/279 (16%), Positives = 83/279 (29%), Gaps = 58/279 (20%)
Query: 5 LSLLSRHPISGRHVGSAATHVFPISPRVFRGSMSVWPARVSLDPHTLRFRVSAAARVGHL 64
+ S P++ H GS HV + F + A + +F
Sbjct: 1 MDAYSTRPLTLSH-GSL-EHVLLVPTASF------FIASQLQE----QFNKILPEPTEGF 48
Query: 65 LHDAGATAAV-LVGAYGLVLSFDNLSQRKLIQQNSTSTEARYFAALVPLVNCL-RLVING 122
D T LVG + L + + S ++ L + + G
Sbjct: 49 AADDEPTTPAELVGKF---LGY-------VSSLVEPSKVGQFDQVLNLCLTEFENCYLEG 98
Query: 123 -------LSLVKDDGLIKSVTREGNPKELLRGPLYYVLMLIL---------SALVFWRDS 166
L++++ T KEL++ Y ++ SAL +R
Sbjct: 99 NDIHALAAKLLQEND-----TTLVKTKELIKN--YITARIMAKRPFDKKSNSAL--FRAV 149
Query: 167 PVGVISLSMMCGGDGIADVIGRRFGSMKIFYNEKKSWAGSISMFVFGFLVS-----TGML 221
G L + GG G D F ++ Y G + F L
Sbjct: 150 GEGNAQLVAIFGGQGNTDD---YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 222 YFYSILGYYQLDWIETLQRVALVSLVATVVESLPITEVV 260
++ G L+W+E + ++ S P+ V+
Sbjct: 207 KVFT-QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Score = 33.9 bits (77), Expect = 0.059
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 20/74 (27%)
Query: 205 GSISMFVFGFLVSTGMLYFYSILGYYQLDWIETLQRVALVSLVATVVESLPITEVVDDNI 264
GS+ LV T + S QL + ++ E DD
Sbjct: 14 GSLE---HVLLVPTASFFIAS-----QL-------QEQFNKILPEPTEGF----AADDEP 54
Query: 265 SVPLASMVAAYLSF 278
+ P A +V +L +
Sbjct: 55 TTP-AELVGKFLGY 67
Score = 28.5 bits (63), Expect = 3.0
Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 11 HPISGRHVGSAATHVFPISPRVFRG--SMSV-WPARVSLDP-HTLRFRVSAAARVGHLLH 66
G + + IS R+ + V W H L F A+ +G L H
Sbjct: 461 DTFDGSDLRVLSG---SISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTH 517
Query: 67 DA--GATAAVLVGA 78
G V+V
Sbjct: 518 RNKDGTGVRVIVAG 531
Score = 27.7 bits (61), Expect = 5.8
Identities = 23/132 (17%), Positives = 38/132 (28%), Gaps = 25/132 (18%)
Query: 42 ARVS-LDPHTLRFRVSAAARVGHLLHDAGATAAVLVGAYGLVLSFDNLSQ---RKLIQQN 97
A++ P LR + A H G AV + SF + L
Sbjct: 253 AKLLGFTPGELRSYLKGA-----TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 98 STSTEARYFAALVPLV--NCLR---------LVINGLSLVKDDGLIKSVTREGNPKE--- 143
EA +L P + + L L I+ L+ + + +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 144 --LLRGPLYYVL 153
L+ G V+
Sbjct: 368 ISLVNGAKNLVV 379
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.056
Identities = 39/269 (14%), Positives = 75/269 (27%), Gaps = 86/269 (31%)
Query: 89 SQRKLIQQNSTSTEARYFAALVPLVNCLRLVINGLSLVKDDGLIKS---------VTREG 139
S ++ +S E R P NCL LV L V++ + TR
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCL-LV---LLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 140 NPKELLRGPLYYVLMLILSALVFWRD------------------------SP--VGVISL 173
+ L + L ++ D +P + +I+
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 174 SM-----------MCGGDGIADVIG------------RRFGSMKIF-YNEKKS------- 202
S+ D + +I + F + +F +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 203 WAGSIS---MFVFGFLVSTGML------YFYSILGYYQLDWIETLQRVALVSLVATVVES 253
W I M V L ++ SI Y ++ +L ++V+
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE---LKVKLENEYALHRSIVDH 452
Query: 254 LPITEVVD-DNISVPLASM-VAAYLSFGY 280
I + D D++ P +++ G+
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHI--GH 479
Score = 33.3 bits (75), Expect = 0.090
Identities = 37/240 (15%), Positives = 68/240 (28%), Gaps = 88/240 (36%)
Query: 28 ISPRVFRGSMSVWPARVSLDPHTL-RFRVSAAARVGHLLHDAGATAAVLVGAYGLVLSFD 86
+PR +S+ + T ++ H+ D T + S +
Sbjct: 325 TNPRR----LSIIAESIRDGLATWDNWK--------HVNCDKLTTI--------IESSLN 364
Query: 87 NLSQRKLIQQNSTSTEAR-YFAALVPLVNCLRLVINGLSLVKDDGLIKSVTREGNPKELL 145
L E R F L S+ I P LL
Sbjct: 365 VLE----------PAEYRKMFDRL--------------SVFPPSAHI--------PTILL 392
Query: 146 ----RGPLYYVLMLIL-----SALVFWRDSPVGVISL-----SMMCGGDGIAD----VIG 187
+ +M+++ +LV + IS+ + + ++
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVE-KQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 188 RRFGSMKIFYNEKKSWAGSISMFVFGFLVSTGMLYFYSILGYYQLDWIETLQRVALVSLV 247
YN K++ + YFYS +G++ L IE +R+ L +V
Sbjct: 452 H--------YNIPKTFDSD------DLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMV 496
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA
binding protein; 2.30A {Mycoplasma genitalium} SCOP:
d.287.1.2 d.287.1.2
Length = 406
Score = 30.9 bits (70), Expect = 0.47
Identities = 14/66 (21%), Positives = 26/66 (39%)
Query: 194 KIFYNEKKSWAGSISMFVFGFLVSTGMLYFYSILGYYQLDWIETLQRVALVSLVATVVES 253
I Y+E + G+ S+ + + +FY L Y Q D E ++ L +
Sbjct: 286 NIRYHEIPWFNGTGSIALEPMNNEIYVPFFYCALKYLQKDIKERMKSDDSPFLSLKLAGE 345
Query: 254 LPITEV 259
+ + V
Sbjct: 346 IKVPYV 351
>3bqy_A Putative TETR family transcriptional regulator; structural
genomics, strept coelicolor, PSI-2, protein structure
initiative; 1.95A {Streptomyces coelicolor A3}
Length = 209
Score = 27.0 bits (60), Expect = 5.7
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 34 RGSMSVWPARVSLDPHTLRFRVSAAARVGHLLHDAGATAAVLVGAYGLVLSF 85
R V+ + P+TLRF A + +L +AG A V +F
Sbjct: 92 RDGARVFAGTHATGPNTLRF----ADGLVGVLREAGFGDGDAARALYSVANF 139
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation,
alakloid biosynt oxidoreductase, alkaloid metabolism;
HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica}
PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A*
3fwa_A*
Length = 495
Score = 26.8 bits (59), Expect = 8.5
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 9/50 (18%)
Query: 43 RVSLDPHTLRFRVSAAARVGHL---LHDAGATAAVL------VGAYGLVL 83
RVS+D + V + + +G L + ++ + VG G +
Sbjct: 102 RVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHIS 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.408
Gapped
Lambda K H
0.267 0.0558 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,217,875
Number of extensions: 251428
Number of successful extensions: 623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 620
Number of HSP's successfully gapped: 15
Length of query: 280
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 188
Effective length of database: 4,133,061
Effective search space: 777015468
Effective search space used: 777015468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.1 bits)