RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 023579
         (280 letters)



>d2pifa1 d.382.1.1 (A:7-262) Uncharacterized protein PSTPO5379
           {Pseudomonas syringae pv. tomato [TaxId: 323]}
          Length = 256

 Score = 25.5 bits (56), Expect = 7.5
 Identities = 8/31 (25%), Positives = 10/31 (32%)

Query: 10  RHPISGRHVGSAATHVFPISPRVFRGSMSVW 40
           RH   G +V    T+          G M V 
Sbjct: 134 RHITDGCNVPMYRTNRACRPAGRLHGEMVVS 164


>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli
           [TaxId: 562]}
          Length = 213

 Score = 25.1 bits (55), Expect = 8.6
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 93  LIQQNSTSTEARYFAALVPLVNCLRLVINGLSLVKDDGLIKSVTR 137
           +I  N +ST A +  +   L   L  ++  L+     GL   +TR
Sbjct: 43  IIDMNPSSTLAVFGGSEANLRVGLETLLGVLNASSRQGLNAELTR 87


>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein
           PH0440 {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 274

 Score = 25.3 bits (55), Expect = 9.1
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 69  GATAAVLVGAYGLVLSFDNLSQRKLIQQNSTSTEARYFAALVPLVNCLRLVINGLSLVKD 128
           GA+     GA   +   + L +  L  +++          + P +  L  +   + +   
Sbjct: 19  GASWLAKKGAEAFLTLAEELDESLL--EDAIMELREEVVKVNPSMASLYNLARFIPVTNR 76

Query: 129 DGLIKSVTRE 138
             ++KS   E
Sbjct: 77  RDILKSRALE 86


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 985,491
Number of extensions: 43462
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 10
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)