BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023581
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 292 bits (748), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/262 (55%), Positives = 174/262 (66%), Gaps = 8/262 (3%)
Query: 21 SFYQEFDITWGDGRAKIHNNGQFLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAG 80
+F + + TW K N G + L LDK +G+GFQSK YLFG MQ+KLVPG+SAG
Sbjct: 16 AFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAG 75
Query: 81 TVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGNREQQFHLWFDPTAAFHT 140
TVTA+YL S S DEIDFEFLGN +G PY L TNVFT GKG+REQ+ +LWFDPT FH
Sbjct: 76 TVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHY 135
Query: 141 YSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTD 200
YS+LWN IVF VD PIR FKN + +GV FP NQPM+IYSSLWNADDWATRGGL KTD
Sbjct: 136 YSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTD 195
Query: 201 WTHAPFTASYRNFKADACLWSNGXXXXXXXXXXXXXWFS----QELDSSSQNKLKWVQKN 256
W+ APF ASYR+F D C W+ Q+LD+ +L WV++
Sbjct: 196 WSKAPFIASYRSFHIDGC---EASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQK 252
Query: 257 YMIYNYCTDTKRFPQGLPVECR 278
Y IYNYCTD R+P +P EC+
Sbjct: 253 YTIYNYCTDRSRYP-SMPPECK 273
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 188 bits (477), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 135/256 (52%), Gaps = 15/256 (5%)
Query: 17 VSAGSFYQEFDITWGDGRAKIHNNGQFLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPG 76
+++ F Q + WG ++ LT+ LD SGSGF+S N Y G +KL G
Sbjct: 38 ITSLGFDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSG 95
Query: 77 NSAGTVTAYYLKS----PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGNREQQFHLWF 132
+AG +T++YL + PG DEID EFLG + G PYTL TNVF G G+RE + HLWF
Sbjct: 96 YTAGVITSFYLSNNQDYPGKH-DEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWF 154
Query: 133 DPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWAT 192
DPT +H Y+I W P I+F VD PIR + P +P+ +Y S+W+A WAT
Sbjct: 155 DPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWAT 211
Query: 193 RGGLVKTDWTHAPFTASYRNFKADACLWSNGXXXXXXXXXXXXXWFSQELDSSSQNKLKW 252
G K D+ + PF Y +FK +C Q++ + ++W
Sbjct: 212 ENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAA-----MEW 266
Query: 253 VQKNYMIYNYCTDTKR 268
VQKNYM+YNYC D R
Sbjct: 267 VQKNYMVYNYCDDPTR 282
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 138/265 (52%), Gaps = 16/265 (6%)
Query: 17 VSAGSFYQEFDITWGDGRAKIHNNGQFLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPG 76
+++ F Q + WG ++ LT+ LD SGSGF+S N Y G +KL G
Sbjct: 15 ITSLGFDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSG 72
Query: 77 NSAGTVTAYYLKS----PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGNREQQFHLWF 132
+AG +T++YL + PG DEID EFLG + G PYTL TNVF G G+RE + HLWF
Sbjct: 73 YTAGVITSFYLSNNQDYPGKH-DEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWF 131
Query: 133 DPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWAT 192
DPT +H Y+I W P I+F VD PIR + P +P+ +Y S+W+A WAT
Sbjct: 132 DPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWAT 188
Query: 193 RGGLVKTDWTHAPFTASYRNFKADACLWSNGXXXXXXXXXXXXXWFSQELDSSSQNKLKW 252
G K D+ + PF Y +FK +C Q++ + ++W
Sbjct: 189 ENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAA-----MEW 243
Query: 253 VQKNYMIYNYCTDTKRFPQGLPVEC 277
VQKNYM+YNYC D R L EC
Sbjct: 244 VQKNYMVYNYCDDPTR-DHTLTPEC 267
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/270 (38%), Positives = 138/270 (51%), Gaps = 21/270 (7%)
Query: 17 VSAGSFYQEFDITWGDGRAKIHNNGQFLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPG 76
+++ F Q + WG ++ LT+ LD SGSGF+S N Y G +KL G
Sbjct: 14 ITSLGFDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSG 71
Query: 77 NSAGTVTAYYLKS----PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGN-----REQQ 127
+AG +T++YL + PG DEID EFLG + G PYTL TNVF G G+ RE +
Sbjct: 72 YTAGVITSFYLSNNQDYPGKH-DEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELR 130
Query: 128 FHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNA 187
HLWFDPT +H Y+I W P I+F VD PIR + P +PM +Y S+W+A
Sbjct: 131 IHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPMWVYGSVWDA 187
Query: 188 DDWATRGGLVKTDWTHAPFTASYRNFKADACLWSNGXXXXXXXXXXXXXWFSQELDSSSQ 247
WAT G K D+ + PF Y +FK +C Q++ +
Sbjct: 188 SSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAA--- 244
Query: 248 NKLKWVQKNYMIYNYCTDTKRFPQGLPVEC 277
++WVQKNYM+YNYC D R L EC
Sbjct: 245 --MEWVQKNYMVYNYCDDPTR-DHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/270 (37%), Positives = 138/270 (51%), Gaps = 21/270 (7%)
Query: 17 VSAGSFYQEFDITWGDGRAKIHNNGQFLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPG 76
+++ F Q + WG ++ LT+ LD SGSGF+S N Y G +KL G
Sbjct: 17 ITSLGFDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSG 74
Query: 77 NSAGTVTAYYLKS----PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGN-----REQQ 127
+AG +T++YL + PG DEID EFLG + G PYTL TNVF G G+ RE +
Sbjct: 75 YTAGVITSFYLSNNQDYPGKH-DEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMR 133
Query: 128 FHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNA 187
HLWFDPT +H Y+I W P I+F VD PIR + P +P+ +Y S+W+A
Sbjct: 134 IHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDA 190
Query: 188 DDWATRGGLVKTDWTHAPFTASYRNFKADACLWSNGXXXXXXXXXXXXXWFSQELDSSSQ 247
WAT G K D+ + PF Y +FK +C Q++ +
Sbjct: 191 SSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAA--- 247
Query: 248 NKLKWVQKNYMIYNYCTDTKRFPQGLPVEC 277
++WVQKNYM+YNYC D R L EC
Sbjct: 248 --MEWVQKNYMVYNYCDDPTR-DHTLTPEC 274
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 29/190 (15%)
Query: 18 SAGSFYQEFD-------ITWGDGRAKIHNNGQF-LTL---SLDKASGSGFQSKNEYLFGK 66
+ GSFY+ F+ W + + G+ L+L S +K G G QS Y +G
Sbjct: 2 TGGSFYEPFNNYNTGLWQKWAFDHVSMTSLGEMRLSLTSPSYNKFDGGGNQSVQTYGYGL 61
Query: 67 IDMQLKLVPGNSAGTVTAYYLKS---PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGN 123
++ +K P + G V+A+Y + G+ WDEID EFLG D + N +TNG GN
Sbjct: 62 YEVNMK--PAKNVGIVSAFYTSTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGVGN 116
Query: 124 REQQFHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSS 183
E+ +L FD ++HTY+ W P I + VDG + K++ + +P P +IY S
Sbjct: 117 HEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG----QLKHTATTQIP---QTPGKIYMS 169
Query: 184 LW---NADDW 190
LW D+W
Sbjct: 170 LWAGAGVDEW 179
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 24/176 (13%)
Query: 26 FDITWGDGRAKIHNNGQFLTLSL-----DKASGSGFQSKNEYLFGKIDMQLKLVPGNSAG 80
F+ TW N+G+ L L L +K + ++S N Y +G ++ +K P + G
Sbjct: 28 FNCTWRANNVNFTNDGK-LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTG 84
Query: 81 TVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGNREQQFHLWFDPTAA 137
V++++ + G+ WDEID EFLG D + N +TNG G E+ L FD +
Sbjct: 85 IVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKG 141
Query: 138 FHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNA---DDW 190
FHTY+ W P I + VDG K++ + +P + P +I +LWN DDW
Sbjct: 142 FHTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 190
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 24/176 (13%)
Query: 26 FDITWGDGRAKIHNNGQFLTLSL-----DKASGSGFQSKNEYLFGKIDMQLKLVPGNSAG 80
F+ TW N+G+ L L L +K + ++S N Y +G ++ +K P + G
Sbjct: 30 FNCTWRANNVNFTNDGK-LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTG 86
Query: 81 TVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGNREQQFHLWFDPTAA 137
V++++ + G+ WDEID EFLG D + N +TNG G E+ L FD +
Sbjct: 87 IVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKG 143
Query: 138 FHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNA---DDW 190
FHTY+ W P I + VDG K++ + +P + P +I +LWN DDW
Sbjct: 144 FHTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 192
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 88/176 (50%), Gaps = 24/176 (13%)
Query: 26 FDITWGDGRAKIHNNGQFLTLSL-----DKASGSGFQSKNEYLFGKIDMQLKLVPGNSAG 80
F+ TW N+G+ L L L +K + ++S N Y +G ++ +K P + G
Sbjct: 30 FNCTWRANNVNFTNDGK-LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTG 86
Query: 81 TVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGNREQQFHLWFDPTAA 137
V++++ + G+ WD+ID +FLG D + N +TNG G E+ L FD +
Sbjct: 87 IVSSFFTYTGPAHGTQWDQIDIQFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKG 143
Query: 138 FHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNA---DDW 190
FHTY+ W P I + VDG K++ + +P + P +I +LWN DDW
Sbjct: 144 FHTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 192
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 18/141 (12%)
Query: 56 FQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTL 112
++S N Y +G ++ +K P + G V++++ + G+ WDEID EFLG D +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 113 HTNVFTNGKGNREQQFHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPF 172
N +TNG G E+ L FD + FHTY+ W P I + VDG K++ + +P
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP- 115
Query: 173 PKNQPMRIYSSLWNA---DDW 190
+ P +I +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 18/141 (12%)
Query: 56 FQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTL 112
++S N Y +G ++ +K P + G V++++ + G+ WDEID EFLG D +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 113 HTNVFTNGKGNREQQFHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPF 172
N +TNG G E+ L FD + FHTY+ W P I + VDG K++ + +P
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP- 115
Query: 173 PKNQPMRIYSSLWNA---DDW 190
+ P +I +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 18/141 (12%)
Query: 56 FQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTL 112
++S N Y +G ++ +K P + G V++++ + G+ WDEID EFLG D +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 113 HTNVFTNGKGNREQQFHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPF 172
N +TNG G E+ L FD + FHTY+ W P I + VDG K++ + +P
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP- 115
Query: 173 PKNQPMRIYSSLWNA---DDW 190
+ P +I +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 24/176 (13%)
Query: 26 FDITWGDGRAKIHNNGQFLTLSLDKASGSGF-----QSKNEYLFGKIDMQLKLVPGNSAG 80
F+ TW + + G+ + LSL S + F +S Y +G ++ +K P + G
Sbjct: 30 FNCTWRANNVSMTSLGE-MRLSLTSPSYNKFDCGENRSVQTYGYGLYEVNMK--PAKNVG 86
Query: 81 TVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGNREQQFHLWFDPTAA 137
V++++ + G+ WDEID EFLG D + N +TNG GN E+ +L FD +
Sbjct: 87 IVSSFFTYTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGVGNHEKIVNLGFDAANS 143
Query: 138 FHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNA---DDW 190
+HTY+ W P I + VDG + K++ + +P P +I +LWN D+W
Sbjct: 144 YHTYAFDWQPNSIKWYVDG----QLKHTATTQIP---QTPGKIMMNLWNGAGVDEW 192
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 24/176 (13%)
Query: 26 FDITWGDGRAKIHNNGQFLTLSLDKASGSGF-----QSKNEYLFGKIDMQLKLVPGNSAG 80
F+ TW + + G+ + L+L + + F +S Y +G ++++K P + G
Sbjct: 54 FNCTWRANNVSMTSLGE-MRLALTSPAYNKFDCGENRSVQTYGYGLYEVRMK--PAKNTG 110
Query: 81 TVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGNREQQFHLWFDPTAA 137
V++++ + G+ WDEID EFLG D + N +TNG GN E+ L FD A
Sbjct: 111 IVSSFFTYTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGAGNHEKIVDLGFDAANA 167
Query: 138 FHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNA---DDW 190
+HTY+ W P I + VDG + K++ + +P P +I +LWN D+W
Sbjct: 168 YHTYAFDWQPNSIKWYVDG----QLKHTATNQIP---TTPGKIMMNLWNGTGVDEW 216
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 18/145 (12%)
Query: 52 SGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP---GSTWDEIDFEFLGNLSGD 108
+G+ +++++++ +G Q+++ P + G V++++ + G+ WDEID EFLG D
Sbjct: 80 AGAEYRTRDKFGYGL--YQVRMKPAKNPGIVSSFFTYTGPVHGTPWDEIDIEFLGK---D 134
Query: 109 PYTLHTNVFTNGKGNREQQFHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSESI 168
+ N +TN GN E + L FD + FH Y+ W P I + VDG + ++ + I
Sbjct: 135 TTKVQFNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDGEEV--YRAYDDI 192
Query: 169 GVPFPKNQPMRIYSSLW---NADDW 190
V P +I ++W D+W
Sbjct: 193 PV-----HPGKIMLNIWPGIGVDEW 212
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 91 GSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGNREQQFHLWFDPTAAFHTYSILWNPQRI 150
G+ WDEID EFLG D + N +TNG G E+ L FD + FHTY+ W P I
Sbjct: 17 GTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYI 73
Query: 151 VFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNA---DDW 190
+ VDG K++ + +P + P +I +LWN DDW
Sbjct: 74 KWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 109
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 46 LSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDF 99
+S+ SG+ + EY +GK + ++K+ ++GTV++ +L GS W E+D
Sbjct: 2 VSMKDFSGAELYTLEEYQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDI 59
Query: 100 EFLGNLSGDPYTLHTNVFTNGKG-NREQQFHLWFDPTA--AFHTYSILWNPQRIVFSVDG 156
E LG P + +N+ T G + + H P A AFHTY + W P + ++VDG
Sbjct: 60 EVLGK---SPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 157 TPIREFKNSE 166
+R+ + +
Sbjct: 117 QEVRKTEGGQ 126
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 14/119 (11%)
Query: 52 SGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDFEFLGNL 105
SG+ + E +GK + ++K+ ++GTV++ +L GS W E+D E LG
Sbjct: 5 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK- 61
Query: 106 SGDPYTLHTNVFTNGKG-NREQQFHLWFDPTA--AFHTYSILWNPQRIVFSVDGTPIRE 161
+P + +N+ T G + + H P A AFHTY + W P + ++VDG +R+
Sbjct: 62 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 118
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 14/124 (11%)
Query: 52 SGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDFEFLGNL 105
SG+ + E +GK + ++K+ ++GTV++ +L GS W E+D E LG
Sbjct: 6 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK- 62
Query: 106 SGDPYTLHTNVFTNGKGNREQQF-HLWFDPTA--AFHTYSILWNPQRIVFSVDGTPIREF 162
+P + +N+ T G ++ H P A AFHTY + W P + ++VDG +R+
Sbjct: 63 --NPGSFQSNIITGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 120
Query: 163 KNSE 166
+ +
Sbjct: 121 EGGQ 124
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 14/124 (11%)
Query: 52 SGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDFEFLGNL 105
SG+ + E +GK + ++K+ ++GTV++ L GS W E+D E LG
Sbjct: 6 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMILYQNGSEIADGRPWVEVDIEVLGK- 62
Query: 106 SGDPYTLHTNVFTNGKG-NREQQFHLWFDPTA--AFHTYSILWNPQRIVFSVDGTPIREF 162
+P + +N+ T G + + H P A AFHTY + W P + ++VDG +R+
Sbjct: 63 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRKT 120
Query: 163 KNSE 166
+ +
Sbjct: 121 EGGQ 124
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 14/125 (11%)
Query: 46 LSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDF 99
+S SG+ + E +GK + + K ++GTV++ +L GS W E+D
Sbjct: 2 VSAKDFSGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDI 59
Query: 100 EFLGNLSGDPYTLHTNVFTNGKG-NREQQFHLWFDPTA--AFHTYSILWNPQRIVFSVDG 156
E LG +P + +N+ T G + + H P A AFHTY + W P + ++VDG
Sbjct: 60 EVLGK---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 157 TPIRE 161
+R+
Sbjct: 117 QEVRK 121
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Query: 52 SGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDFEFLGNL 105
SG+ + E +GK + + K ++GTV++ +L GS W E+D E LG
Sbjct: 5 SGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK- 61
Query: 106 SGDPYTLHTNVFTNGKG-NREQQFHLWFDPTA--AFHTYSILWNPQRIVFSVDGTPIRE 161
+P + +N+ T G + + H P A AFHTY + W P + ++VDG +R+
Sbjct: 62 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 118
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 19/176 (10%)
Query: 32 DGRAK--IHNNGQFLTLSLDKASGS------GFQSKNEYLFGKIDMQLKLVPGNSAGTVT 83
D RA + NG + + +A G Q+K + +G+++ +++ G G
Sbjct: 47 DSRANSALDGNGNLVITARQEADGGYTSARLTTQNKVQPQYGRVEASIQIPRGQ--GIWP 104
Query: 84 AYYLKS---PGSTW-DEIDFEFLGNLSGDPYTLHTNVFTNGKGNREQQFHLWFDPTA--- 136
A+++ P + W D + + + N+ +P+ +H ++ G E + P
Sbjct: 105 AFWMLGADFPNTPWPDSGEIDIMENIGREPHLVHGSLHGPGYFGGEPLTGSYMHPQGWSF 164
Query: 137 --AFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDW 190
FHT+++ W P I +SVDG + + ++++ G P+ +QP + ++ DW
Sbjct: 165 ADTFHTFAVDWRPGSITWSVDGVAYQTYTSADTRGNPWVFDQPFFMILNVAVGGDW 220
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 122 GNREQQFHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIY 181
G E+ L FD + FHTY+ W P I + VDG K++ + +P + P +I
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIM 54
Query: 182 SSLWNA---DDW 190
+LWN DDW
Sbjct: 55 MNLWNGTGVDDW 66
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 14/103 (13%)
Query: 26 FDITWGDGRAKIHNNGQFLTLSL-----DKASGSGFQSKNEYLFGKIDMQLKLVPGNSAG 80
F+ TW N+G+ L L L +K + ++S N Y +G ++ +K P + G
Sbjct: 118 FNCTWRANNVNFTNDGK-LKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTG 174
Query: 81 TVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNG 120
V++++ + G+ WDEID EFLG D + N +TNG
Sbjct: 175 IVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNG 214
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 57 QSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKS---PGSTWDEI-DFEFLGNLSGDPYTL 112
Q K + +G+I+ ++++ G G A+++ PG+ W + + + N+ +P+ +
Sbjct: 76 QGKYQPQYGRIEARIQIPRGQ--GIWPAFWMLGGSFPGTPWPSSGEIDIMENVGFEPHRV 133
Query: 113 HTNVFTNGKGNREQQFHLWFDPTA-----AFHTYSILWNPQRIVFSVDG 156
H V G ++ P FHT+++ W P I + VDG
Sbjct: 134 HGTVHGPGYSGGSGITGMYQHPQGWSFADTFHTFAVDWKPGEITWFVDG 182
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 96 EIDF-EFLGNLSGDPYTLHTNVFTNGKGNREQQFHLWFDP------TAAFHTYSILWNPQ 148
EID EFLG+ +P T+H V G + + P T FH + I+W P
Sbjct: 137 EIDIMEFLGH---EPRTIHGTVHGPGYSGSKGITRAYTLPEGVPDFTEDFHVFGIVWYPD 193
Query: 149 RIVFSVDGTPIREF--KNSESIGVPFPKNQPMRIYSSL 184
+I + VDGT E + E++G + ++P I +L
Sbjct: 194 KIKWYVDGTFYHEVTKEQVEAMGYEWVFDKPFYIILNL 231
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 76/193 (39%), Gaps = 35/193 (18%)
Query: 34 RAKIHN---NGQFLTLSLDKASGSGFQ---------SKNEYLFGKIDMQLKLVPGNSAGT 81
RA+I N G L + + S G + K + +G+ +++ +L G GT
Sbjct: 43 RARIENARVGGGVLIIEARRESYEGREYTSARLVTRGKASWTYGRFEIRARLPSGR--GT 100
Query: 82 VTAYYLKSPGSTW------DEIDFEFLGNLSGDPYTLHTNVFTNGKGN-----REQQFHL 130
A ++ T+ D + + ++ +P +H V T + R +
Sbjct: 101 WPAIWMLPDRQTYGSAYWPDNGEIDIAEHVGFNPDVVHGTVHTKAYNHLLGTQRGGSIRV 160
Query: 131 WFDPTAA--FHTYSILWNPQRIVFSVDGT-----PIREFKNSESIGVPFPKNQPMRIYSS 183
PTA FH Y+I W P+ I + VD + P N E+ +P +QP + +
Sbjct: 161 ---PTARTDFHVYAIEWTPEEIRWFVDDSLYYRFPNERLTNPEADWRHWPFDQPFHLIMN 217
Query: 184 LWNADDWATRGGL 196
+ W + G+
Sbjct: 218 IAVGGTWGGQQGV 230
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 13/84 (15%)
Query: 94 WDEIDFEFLGNLSG---DPYTLHTNVFTNGK----------GNREQQFHLWFDPTAAFHT 140
+ EID L S + LH V NGK +HL FDP FHT
Sbjct: 135 YSEIDVVELTQKSAVRESDHDLHNIVVKNGKPTWXRPGSFPQTNHNGYHLPFDPRNDFHT 194
Query: 141 YSILWNPQRIVFSVDGTPIREFKN 164
Y + +I + VDG + E N
Sbjct: 195 YGVNVTKDKITWYVDGEIVGEKDN 218
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Query: 190 WATRGGLVKTDWTHAPFTASYRNFKADACLWSNGXXXXXXXXXXXXXWFSQELDSSSQNK 249
+ TRGG + WT AP +YR F + + +WS G ++ D S+Q+
Sbjct: 168 YTTRGGKIPIRWT-APEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW----DMSNQDV 222
Query: 250 LKWVQKNYMIYNYCTDTKRFPQGLPVECRTA 280
+K +++ Y R P P++C A
Sbjct: 223 IKAIEEGY----------RLPP--PMDCPIA 241
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 190 WATRGGLVKTDWTHAPFTASYRNFKADACLWSNGXXXXXXXXXXXXXWFSQELDSSSQNK 249
+ TRGG + WT AP +YR F + + +WS G ++ D S+Q+
Sbjct: 189 YTTRGGKIPIRWT-APEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW----DMSNQDV 243
Query: 250 LKWVQKNYMI 259
+K +++ Y +
Sbjct: 244 IKAIEEGYRL 253
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 190 WATRGGLVKTDWTHAPFTASYRNFKADACLWSNGXXXXXXXXXXXXXWFSQELDSSSQNK 249
+ TRGG + WT AP +YR F + + +WS G ++ D S+Q+
Sbjct: 174 YTTRGGKIPIRWT-APEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYW----DMSNQDV 228
Query: 250 LKWVQKNYMI 259
+K +++ Y +
Sbjct: 229 IKAIEEGYRL 238
>pdb|2DH3|A Chain A, Crystal Structure Of Human Ed-4f2hc
pdb|2DH3|B Chain B, Crystal Structure Of Human Ed-4f2hc
Length = 424
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 28/144 (19%)
Query: 68 DMQ--LKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGNR- 124
D+Q L L+ N +T+ YL GST G+ + N GNR
Sbjct: 178 DLQQILSLLESNKDLLLTSSYLSDSGST-------------GEHTKSLVTQYLNATGNRW 224
Query: 125 ------EQQFHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPM 178
+ + F P Y Q ++F++ GTP+ + + + QPM
Sbjct: 225 CSWSLSQARLLTSFLPAQLLRLY------QLMLFTLPGTPVFSYGDEIGLDAAALPGQPM 278
Query: 179 RIYSSLWNADDWATRGGLVKTDWT 202
LW+ + G V + T
Sbjct: 279 EAPVMLWDESSFPDIPGAVSANMT 302
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 190 WATRGGLVKTDWTHAPFTASYRNFKADACLWSNGXXXXXXXXXXXXXWFSQELDSSSQNK 249
+ T GG + WT AP YR F + + +WS G ++ D S+Q+
Sbjct: 203 YTTTGGKIPVRWT-APEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYW----DMSNQDV 257
Query: 250 LKWVQKNYMI 259
+K +++ Y +
Sbjct: 258 IKAIEEGYRL 267
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 190 WATRGGLVKTDWTHAPFTASYRNFKADACLWSNG 223
+ T GG + WT AP SYR F + + +WS G
Sbjct: 205 YTTSGGKIPIRWT-APEAISYRKFTSASDVWSFG 237
>pdb|2KSN|A Chain A, Solution Structure Of The N-Terminal Domain Of Dc-UbpUBTD2
Length = 137
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 163 KNSESIGVPFPKNQPMRIYSSLWNADDWATRGGL-VKTD--WTHAP 205
+NSE GV +NQP++ W +D T G L K D W AP
Sbjct: 5 ENSEGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAP 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,105,100
Number of Sequences: 62578
Number of extensions: 392750
Number of successful extensions: 798
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 42
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)