Query 023581
Match_columns 280
No_of_seqs 282 out of 1761
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 3.2E-84 7E-89 590.5 34.1 278 1-280 1-289 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 6.8E-82 1.5E-86 571.4 32.6 256 19-277 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 7.3E-44 1.6E-48 313.1 24.7 177 26-216 10-200 (203)
4 cd02175 GH16_lichenase lichena 100.0 1.8E-38 3.8E-43 280.3 24.4 172 28-216 27-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 6.8E-36 1.5E-40 256.8 20.4 174 24-214 3-185 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 9.6E-34 2.1E-38 247.8 23.3 170 28-215 25-209 (210)
7 cd02178 GH16_beta_agarase Beta 100.0 8.1E-34 1.8E-38 257.7 21.7 178 31-216 56-257 (258)
8 cd08023 GH16_laminarinase_like 100.0 3.5E-33 7.6E-38 249.4 22.0 177 28-215 33-234 (235)
9 cd02177 GH16_kappa_carrageenas 100.0 3.1E-31 6.7E-36 241.8 21.6 170 32-216 43-268 (269)
10 cd02180 GH16_fungal_KRE6_gluca 100.0 3.2E-31 7E-36 244.5 19.1 181 29-216 37-294 (295)
11 cd02182 GH16_Strep_laminarinas 100.0 8.2E-31 1.8E-35 238.2 20.2 181 29-216 42-258 (259)
12 cd08024 GH16_CCF Coelomic cyto 100.0 1.5E-29 3.2E-34 237.3 18.8 137 53-191 101-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 100.0 6.3E-29 1.4E-33 232.1 17.9 134 53-188 98-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 1.1E-24 2.3E-29 205.5 18.9 155 28-191 74-242 (355)
15 PF06955 XET_C: Xyloglucan end 99.8 1.5E-20 3.3E-25 129.9 4.1 45 233-277 4-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.7 4.6E-16 1E-20 151.1 14.3 189 31-229 159-464 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.6 7.7E-15 1.7E-19 134.6 12.6 148 39-191 47-251 (293)
18 PF13385 Laminin_G_3: Concanav 94.1 1.5 3.2E-05 34.7 12.0 65 134-216 83-147 (157)
19 smart00560 LamGL LamG-like jel 93.1 3.9 8.4E-05 33.0 14.2 70 134-220 59-130 (133)
20 PF06439 DUF1080: Domain of Un 93.1 1 2.2E-05 37.9 9.7 120 38-165 28-156 (185)
21 smart00210 TSPN Thrombospondin 90.6 5 0.00011 34.4 11.3 88 66-163 55-144 (184)
22 smart00159 PTX Pentraxin / C-r 90.1 12 0.00026 32.6 17.1 71 134-215 88-160 (206)
23 PF10287 DUF2401: Putative TOS 89.5 1.7 3.6E-05 39.2 7.6 77 66-148 102-207 (235)
24 PF09264 Sial-lect-inser: Vibr 87.3 1.1 2.3E-05 39.1 4.7 100 51-163 16-121 (198)
25 cd00152 PTX Pentraxins are pla 86.0 22 0.00047 30.8 17.7 28 134-161 88-117 (201)
26 cd00110 LamG Laminin G domain; 85.5 17 0.00036 28.9 15.7 85 63-161 20-105 (151)
27 PF14099 Polysacc_lyase: Polys 75.9 28 0.0006 30.3 9.6 55 129-187 145-204 (224)
28 PF09224 DUF1961: Domain of un 66.9 27 0.00058 31.2 7.2 60 136-215 159-218 (218)
29 PF00354 Pentaxin: Pentaxin fa 63.7 64 0.0014 28.0 9.1 86 134-252 82-169 (195)
30 PF02973 Sialidase: Sialidase, 54.8 1.5E+02 0.0032 26.0 10.9 132 60-218 30-175 (190)
31 PF11948 DUF3465: Protein of u 52.6 53 0.0012 27.0 6.2 25 31-55 33-57 (131)
32 smart00282 LamG Laminin G doma 48.7 72 0.0016 25.0 6.5 27 135-161 61-87 (135)
33 PF02210 Laminin_G_2: Laminin 44.1 1.4E+02 0.003 22.5 8.3 31 134-164 52-82 (128)
34 KOG1834 Calsyntenin [Extracell 42.1 25 0.00054 36.4 3.3 52 135-191 441-492 (952)
35 cd06482 ACD_HspB10 Alpha cryst 34.0 69 0.0015 24.2 3.9 45 32-76 21-65 (87)
36 cd06526 metazoan_ACD Alpha-cry 32.1 1.1E+02 0.0023 22.4 4.6 51 31-84 19-69 (83)
37 cd06470 ACD_IbpA-B_like Alpha- 31.3 82 0.0018 23.6 4.0 45 31-76 23-71 (90)
38 PF07691 PA14: PA14 domain; I 24.9 1E+02 0.0022 24.3 3.8 29 134-163 57-85 (145)
39 KOG4352 Fas-mediated apoptosis 23.5 1.5E+02 0.0034 25.1 4.5 35 126-161 93-127 (187)
40 cd00070 GLECT Galectin/galacto 22.6 1.6E+02 0.0034 23.3 4.4 48 115-163 56-104 (127)
41 PF02057 Glyco_hydro_59: Glyco 22.5 3.2E+02 0.0069 28.6 7.4 29 135-163 610-638 (669)
42 PF10916 DUF2712: Protein of u 21.9 2.7E+02 0.0058 23.4 5.6 19 67-87 64-83 (146)
43 PF00337 Gal-bind_lectin: Gala 21.8 3.3E+02 0.0072 21.4 6.2 49 115-164 61-110 (133)
44 cd06464 ACD_sHsps-like Alpha-c 21.4 1.6E+02 0.0035 20.8 3.9 47 31-77 19-68 (88)
45 COG0071 IbpA Molecular chapero 20.6 2.7E+02 0.0058 22.7 5.5 45 32-76 63-111 (146)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=3.2e-84 Score=590.48 Aligned_cols=278 Identities=53% Similarity=0.992 Sum_probs=250.0
Q ss_pred ChhHHHHHHHHHhhhhc-----ccccccccceeeecCCCeEEecCCcEEEEEEeCCCCCeEEEccceEeEEEEEEEEecC
Q 023581 1 MASMLHLFLVLGTLMVV-----SAGSFYQEFDITWGDGRAKIHNNGQFLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVP 75 (280)
Q Consensus 1 ~a~~~~~~~~~~~~~~~-----~~~~f~~~f~~~w~~~nv~~~~~G~~l~L~l~~~sGs~i~Sk~~~~YG~~eariKlp~ 75 (280)
||+++.+|+.+.++.++ +..+|.++|.++|+.+|+.+.++|..|+|+||+.+|++|+||+.|+||+||+|||||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~ 80 (291)
T PLN03161 1 MASLKTLLVALFAALAAFDRSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVP 80 (291)
T ss_pred ChhHHHHHHHHHHHHHhcCCCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCC
Confidence 67775555444433332 3567999999999999999988888899999999999999999999999999999999
Q ss_pred CCCCccEEEEEeecCCCCCCeeEEEeCCCCCCCceEEEeeeecCCCCCceeeEecCCCCCCCcEEEEEEEeCCcEEEEEC
Q 023581 76 GNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGNREQQFHLWFDPTAAFHTYSILWNPQRIVFSVD 155 (280)
Q Consensus 76 g~s~G~~~AFwl~~~~~~~~EIDiE~lG~~~g~~~~~~tn~~~~g~g~~~~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVD 155 (280)
|+++|+||||||++.++.+|||||||||+++++++++|+|+|.+|.+++++++.++||++++||+|+|+|+|++|+||||
T Consensus 81 G~saG~v~AFwl~s~~~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVD 160 (291)
T PLN03161 81 GNSAGTVTAYYLSSTGSRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVD 160 (291)
T ss_pred CCCCCeEEEEEecCCCCCCCeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEEC
Confidence 88899999999999767899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEecCCCCCCCCCCCCCeEEEEecccCCCcccCCCccccCCCCCCeEEEEcEEEEEEEEeCCC--CCCCCCCCcC
Q 023581 156 GTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFKADACLWSNG--KSSCASSKSR 233 (280)
Q Consensus 156 G~~vr~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~~c~~~~~--~~~c~~~~~~ 233 (280)
|++||++++.+..+.+||+++||+|++|||+|++|||+||++||||+++||+|.|++|++++|.++++ ...|... +
T Consensus 161 G~~iRt~~~~~~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~--~ 238 (291)
T PLN03161 161 GTPIRVFRNYENEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADP--T 238 (291)
T ss_pred CEEEEEEEcccccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCC--C
Confidence 99999999877777889988899999999999999999999999999999999999999999998754 2468642 1
Q ss_pred Cccccc----cCCCHHHHHHHHHHhhcCeEeecccCCCCCCCCCCCCccCC
Q 023581 234 SRAWFS----QELDSSSQNKLKWVQKNYMIYNYCTDTKRFPQGLPVECRTA 280 (280)
Q Consensus 234 ~~~~~~----~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~~~~ec~~~ 280 (280)
+..||+ ++|+++|+++|+|||+||||||||+|++|||.++||||.++
T Consensus 239 ~~~~~~~~~~~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~ 289 (291)
T PLN03161 239 PSNWWTSPSYSQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECFKP 289 (291)
T ss_pred ccccccCccccCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccCCC
Confidence 345776 47999999999999999999999999999998789999864
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=6.8e-82 Score=571.35 Aligned_cols=256 Identities=57% Similarity=1.107 Sum_probs=238.7
Q ss_pred cccccccceeeecCCCeEEecCCcEEEEEEeCCCCCeEEEccceEeEEEEEEEEecCCCCCccEEEEEeecC-CCCCCee
Q 023581 19 AGSFYQEFDITWGDGRAKIHNNGQFLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP-GSTWDEI 97 (280)
Q Consensus 19 ~~~f~~~f~~~w~~~nv~~~~~G~~l~L~l~~~sGs~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~-~~~~~EI 97 (280)
+.+|.++|.++|+++||++.++|..|+|+||+.+|++|+||+.|+||+||||||||+++++|+||||||+++ ||.++||
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~~~EI 82 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDNHDEI 82 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCCCCeE
Confidence 457999999999999999988898999999999999999999999999999999999888999999999998 5899999
Q ss_pred EEEeCCCCCCCceEEEeeeecCCCCCceeeEecCCCCCCCcEEEEEEEeCCcEEEEECCeeEEEEecCCCCCCCCCCCCC
Q 023581 98 DFEFLGNLSGDPYTLHTNVFTNGKGNREQQFHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQP 177 (280)
Q Consensus 98 DiE~lG~~~g~~~~~~tn~~~~g~g~~~~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~~~P~~~P 177 (280)
|||++|+++++++++|||+|.+|.+++++++.++||++++||+|+|+|+|++|+|||||++||++++.+..+.+||+++|
T Consensus 83 D~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 162 (263)
T cd02176 83 DFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQP 162 (263)
T ss_pred EEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccce
Confidence 99999999999999999999999888999999999999999999999999999999999999999988777788998899
Q ss_pred eEEEEecccCCCcccCCCccccCCCCCCeEEEEcEEEEEEEEeCCCCCCCCCCCcCCccccc----cCCCHHHHHHHHHH
Q 023581 178 MRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFKADACLWSNGKSSCASSKSRSRAWFS----QELDSSSQNKLKWV 253 (280)
Q Consensus 178 m~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~~c~~~~~~~~c~~~~~~~~~~~~----~~l~~~~~~~~~~~ 253 (280)
|+|++|||+||+|||+||++|+||+++||+|.|++|+|++|.+++....|... ....||+ ++|+++|+++|+||
T Consensus 163 m~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~ 240 (263)
T cd02176 163 MGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCS--CTEDWWNGSTYQQLSANQQRAMEWV 240 (263)
T ss_pred EEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccccCC--CccccccccccccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987665556531 1135776 48999999999999
Q ss_pred hhcCeEeecccCCCCCCCCCCCCc
Q 023581 254 QKNYMIYNYCTDTKRFPQGLPVEC 277 (280)
Q Consensus 254 ~~~~~~y~yc~d~~r~~~~~~~ec 277 (280)
|+||||||||+|++|||. +||||
T Consensus 241 ~~~~~~y~yC~d~~r~~~-~p~ec 263 (263)
T cd02176 241 RRNYMVYDYCDDRKRYPV-PPPEC 263 (263)
T ss_pred HHCCEEEecCCCCCcCCC-CcCCC
Confidence 999999999999999996 89999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=7.3e-44 Score=313.07 Aligned_cols=177 Identities=32% Similarity=0.655 Sum_probs=153.2
Q ss_pred ceeeecCCCeEEecCCcEEEEEEeCC-CCCeEEEccceEeEEEEEEEEecCCCCCccEEEEEeecCCCCCCeeEEEeCCC
Q 023581 26 FDITWGDGRAKIHNNGQFLTLSLDKA-SGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGN 104 (280)
Q Consensus 26 f~~~w~~~nv~~~~~G~~l~L~l~~~-sGs~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~~~~~~EIDiE~lG~ 104 (280)
+..+...+||.+.++| |.|+|++. +|++|.|+++|+||+||||||+|.+ +|+||||||+++ .++|||||++|+
T Consensus 10 ~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~--~~gEIDIE~~G~ 83 (203)
T cd02183 10 YDWTVTSGTVDYDDDG--ASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD--DLDEIDWEWVGG 83 (203)
T ss_pred CccEecCCcEeECCCe--EEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC--CCCEEEEEecCC
Confidence 3456678899986433 88999877 7899999999999999999999999 899999999998 679999999997
Q ss_pred CCCCceEEEeeeecCCCC---CceeeEecCCCCCCCcEEEEEEEeCCcEEEEECCeeEEEEecCCC-CCCCCCCCCCeEE
Q 023581 105 LSGDPYTLHTNVFTNGKG---NREQQFHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSES-IGVPFPKNQPMRI 180 (280)
Q Consensus 105 ~~g~~~~~~tn~~~~g~g---~~~~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~-~~~~~P~~~Pm~l 180 (280)
++..+|+|+|.++.. ++.+.+.+.++++++||+|+|+|+|++|+|||||++++++++.+. .+..||. +||+|
T Consensus 84 ---~~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~-~P~~l 159 (203)
T cd02183 84 ---DLTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQ-TPMRL 159 (203)
T ss_pred ---CCCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCC-CCcEE
Confidence 456899999987654 445667788888899999999999999999999999999987542 3567996 99999
Q ss_pred EEecccCCC---------cccCCCccccCCCCCCeEEEEcEEEEE
Q 023581 181 YSSLWNADD---------WATRGGLVKTDWTHAPFTASYRNFKAD 216 (280)
Q Consensus 181 ~lnlw~gg~---------Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 216 (280)
++|+|+||+ || ||+ +||+.+||+|.|++|+|.
T Consensus 160 ~ln~W~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~v~ 200 (203)
T cd02183 160 QIGIWAGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVTVT 200 (203)
T ss_pred EEEEecCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEEEE
Confidence 999999985 99 785 699999999999999974
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=1.8e-38 Score=280.33 Aligned_cols=172 Identities=32% Similarity=0.648 Sum_probs=145.9
Q ss_pred eeecCCCeEEecCCcEEEEEEeCC-------CCCeEEEccceEeEEEEEEEEecCCCCCccEEEEEeecC---CCCCCee
Q 023581 28 ITWGDGRAKIHNNGQFLTLSLDKA-------SGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP---GSTWDEI 97 (280)
Q Consensus 28 ~~w~~~nv~~~~~G~~l~L~l~~~-------sGs~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~---~~~~~EI 97 (280)
.+|.++||.+. +|. |+|++.+. ++++|.|+.+|+||+||||||+|.+ +|+||||||++. +..++||
T Consensus 27 ~~~~~~nv~v~-~g~-L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~EI 102 (212)
T cd02175 27 CTWSADNVEFS-DGG-LALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHDEI 102 (212)
T ss_pred eeEccccEEEE-CCe-EEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCCEE
Confidence 57889999995 665 88887543 4789999999999999999999988 899999999974 3457999
Q ss_pred EEEeCCCCCCCceEEEeeeecCCCCCceeeEecCCCCCCCcEEEEEEEeCCcEEEEECCeeEEEEecCCCCCCCCCCCCC
Q 023581 98 DFEFLGNLSGDPYTLHTNVFTNGKGNREQQFHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQP 177 (280)
Q Consensus 98 DiE~lG~~~g~~~~~~tn~~~~g~g~~~~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~~~P~~~P 177 (280)
|||++|++. ..+|+|+|.++.+.....+.+.+++.++||+|+|+|+|++|+|||||++++++...+ ..+|. +|
T Consensus 103 DiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p~-~p 175 (212)
T cd02175 103 DIEFLGKDT---TKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIPD-TP 175 (212)
T ss_pred EEEEccCCC---CEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCCC-CC
Confidence 999999754 368899988876666666778889999999999999999999999999999998643 35787 99
Q ss_pred eEEEEecccCC---CcccCCCccccCCCCCCeEEEEcEEEEE
Q 023581 178 MRIYSSLWNAD---DWATRGGLVKTDWTHAPFTASYRNFKAD 216 (280)
Q Consensus 178 m~l~lnlw~gg---~Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 216 (280)
|+|++|+|.|+ +|+ |. +|. .+|+.|+||+||+.
T Consensus 176 ~~i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 176 GKIMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred cEEEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEe
Confidence 99999999985 598 53 366 89999999999974
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=6.8e-36 Score=256.80 Aligned_cols=174 Identities=35% Similarity=0.677 Sum_probs=148.5
Q ss_pred ccceeeecCCCeEEecCCcEEEEEEeC-----CCCCeEEEccceEeEEEEEEEEecCCCCCccEEEEEeecC--CCCCCe
Q 023581 24 QEFDITWGDGRAKIHNNGQFLTLSLDK-----ASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP--GSTWDE 96 (280)
Q Consensus 24 ~~f~~~w~~~nv~~~~~G~~l~L~l~~-----~sGs~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~--~~~~~E 96 (280)
+.++++|+++||.+. +|..|.|++++ .++++|+|++.++||+||+|||++.+ +|+|+||||.+. |+.++|
T Consensus 3 ~~~~~~~~~~nv~~~-~g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~~~E 79 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVE-DGGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPDGGE 79 (185)
T ss_dssp CTEEEEETCCGEEEE-TTSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTTTEE
T ss_pred CceEEeeCCCcEEEc-CCCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccchhh
Confidence 568899999999995 55458999876 57899999999999999999999888 899999999764 689999
Q ss_pred eEEEeCCCCCCCceEEEeeeecCCCCCc--eeeEecCCCCCCCcEEEEEEEeCCcEEEEECCeeEEEEecCCCCCCCCCC
Q 023581 97 IDFEFLGNLSGDPYTLHTNVFTNGKGNR--EQQFHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPK 174 (280)
Q Consensus 97 IDiE~lG~~~g~~~~~~tn~~~~g~g~~--~~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~~~P~ 174 (280)
||||++|+++. .+++|+|..+.+.. ..++.+.+++.++||+|+|+|+|++|+|||||++++++......+..+|.
T Consensus 80 IDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~ 156 (185)
T PF00722_consen 80 IDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYPF 156 (185)
T ss_dssp EEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSSE
T ss_pred hhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCcc
Confidence 99999998544 59999999887765 45677788999999999999999999999999999999987644345887
Q ss_pred CCCeEEEEecccCCCcccCCCccccCCCCCCeEEEEcEEE
Q 023581 175 NQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFK 214 (280)
Q Consensus 175 ~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~ 214 (280)
..||+|.+++|.|++|++..| .|+|||||
T Consensus 157 ~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 157 STPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred cceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 789999999999998885555 46777765
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=9.6e-34 Score=247.82 Aligned_cols=170 Identities=36% Similarity=0.604 Sum_probs=141.9
Q ss_pred eeecCCCeEEecCCcEEEEEEeCC------CCCeEEE-ccceEeEEEEEEEEecCCCCCccEEEEEeecCC---CCCCee
Q 023581 28 ITWGDGRAKIHNNGQFLTLSLDKA------SGSGFQS-KNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPG---STWDEI 97 (280)
Q Consensus 28 ~~w~~~nv~~~~~G~~l~L~l~~~------sGs~i~S-k~~~~YG~~eariKlp~g~s~G~~~AFwl~~~~---~~~~EI 97 (280)
..|.++||.+.++|. |.|++.+. ++++|.| ++.|+||+||+|||+|.+ .|+|+||||++.. +..+||
T Consensus 25 ~~~~~~nv~~~~~G~-L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~EI 101 (210)
T cd00413 25 MTNSPNNVYVENDGG-LTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGEI 101 (210)
T ss_pred EEECccCEEEeCCCe-EEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCeE
Confidence 578899999976576 88887433 5689999 999999999999999998 8999999999973 679999
Q ss_pred EEEeCCCCCCCceEEEeeeecCCCC-----CceeeEecCCCCCCCcEEEEEEEeCCcEEEEECCeeEEEEecCCCCCCCC
Q 023581 98 DFEFLGNLSGDPYTLHTNVFTNGKG-----NREQQFHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPF 172 (280)
Q Consensus 98 DiE~lG~~~g~~~~~~tn~~~~g~g-----~~~~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~~~ 172 (280)
|||++|++ +..+++++|..+.+ .....+.+++++.++||+|+|+|+|++|+|||||++++++.+. .
T Consensus 102 DiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~------~ 172 (210)
T cd00413 102 DIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ------V 172 (210)
T ss_pred EEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC------C
Confidence 99999975 34688888876543 2234455666678999999999999999999999999998743 6
Q ss_pred CCCCCeEEEEecccCCCcccCCCccccCCCCCCeEEEEcEEEE
Q 023581 173 PKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFKA 215 (280)
Q Consensus 173 P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v 215 (280)
|. +||+|+||+|.+++|+. . .+....|..|+||+|||
T Consensus 173 p~-~p~~i~ln~~~~~~~~~--~---~~~~~~~~~~~Vd~vrv 209 (210)
T cd00413 173 PD-DPMNIILNLWSDGGWWW--G---GPPPGAPAYMEIDWVRV 209 (210)
T ss_pred CC-CCcEEEEEEEECCCCcc--c---CCCCCCCcEEEEEEEEE
Confidence 76 99999999999999872 2 24578899999999997
No 7
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=8.1e-34 Score=257.72 Aligned_cols=178 Identities=21% Similarity=0.250 Sum_probs=135.6
Q ss_pred cCCCeEEecCCcEEEEEEeCC-----------CCCeEEEccceEeEEEEEEEEecCCCCCccEEEEEeecC-CCCCCeeE
Q 023581 31 GDGRAKIHNNGQFLTLSLDKA-----------SGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP-GSTWDEID 98 (280)
Q Consensus 31 ~~~nv~~~~~G~~l~L~l~~~-----------sGs~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~-~~~~~EID 98 (280)
.++||.+ .+|+ |.|++.+. ++++|.|++.|+||+||||||+|.+ +.+|||||++. ++.++|||
T Consensus 56 ~~~nv~v-~~G~-L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~---~~~pAfW~~~~~~~~~gEID 130 (258)
T cd02178 56 SADNVSV-EDGN-LVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL---PMSSAFWLLSDTKDSTTEID 130 (258)
T ss_pred ccCCeEE-ECCE-EEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC---CccceEEEccCCCCCCCcEE
Confidence 4678887 5786 77777433 3578999999999999999999987 35899999997 67899999
Q ss_pred E-EeCCCCCC--CceEEEeeeecCCCC-----Cc---eeeEecCCCCCCCcEEEEEEEe-CCcEEEEECCeeEEEEecCC
Q 023581 99 F-EFLGNLSG--DPYTLHTNVFTNGKG-----NR---EQQFHLWFDPTAAFHTYSILWN-PQRIVFSVDGTPIREFKNSE 166 (280)
Q Consensus 99 i-E~lG~~~g--~~~~~~tn~~~~g~g-----~~---~~~~~l~fd~~~dfHtY~i~Wt-p~~I~fyVDG~~vr~~~~~~ 166 (280)
| |++|++.+ .+..+|+++|..+.+ .+ ...+...++..++||+|+|+|+ |++|+|||||++++++.+.+
T Consensus 131 I~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~ 210 (258)
T cd02178 131 ILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSE 210 (258)
T ss_pred hhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCcc
Confidence 8 99997631 234788887643221 11 1234455667899999999999 99999999999999998754
Q ss_pred CCCCCCCCCCCeEEEEecccCCCcccCCCccccCCCCCCeEEEEcEEEEE
Q 023581 167 SIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFKAD 216 (280)
Q Consensus 167 ~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 216 (280)
. ...+|+++||+|+||+++|| |+...+.. ..-...|..|+||+|||.
T Consensus 211 ~-~~~~~f~~p~~liln~avg~-w~g~~~~~-~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 211 I-TDGTGFDQPMYIIIDTETYD-WRGEPTDE-ELADDSKNTFYVDYVRVY 257 (258)
T ss_pred c-CcCCcCCCCeEEEEEecccc-CCCCCCcc-ccCCCCCCeEEEEEEEEe
Confidence 3 33467789999999999998 98211121 123456999999999984
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=3.5e-33 Score=249.40 Aligned_cols=177 Identities=25% Similarity=0.456 Sum_probs=140.9
Q ss_pred eeecCCCeEEecCCcEEEEEEeCC----------CCCeEEE--ccceEeEEEEEEEEecCCCCCccEEEEEeecC-----
Q 023581 28 ITWGDGRAKIHNNGQFLTLSLDKA----------SGSGFQS--KNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP----- 90 (280)
Q Consensus 28 ~~w~~~nv~~~~~G~~l~L~l~~~----------sGs~i~S--k~~~~YG~~eariKlp~g~s~G~~~AFwl~~~----- 90 (280)
..+.++|+.+ .+|. |.|+..+. ++++|.| ++.|+||+||||||+|.+ +|+||||||+++
T Consensus 33 ~~~~~~nv~v-~~G~-L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~ 108 (235)
T cd08023 33 YTYRPENAYV-EDGN-LVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYV 108 (235)
T ss_pred EeCCCCCeEE-ECCE-EEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCC
Confidence 3567899988 4776 77776432 2568999 899999999999999998 899999999986
Q ss_pred -CCCCCeeEE-EeCCCCCCCceEEEeeeecCCCC----CceeeEecCC-CCCCCcEEEEEEEeCCcEEEEECCeeEEEEe
Q 023581 91 -GSTWDEIDF-EFLGNLSGDPYTLHTNVFTNGKG----NREQQFHLWF-DPTAAFHTYSILWNPQRIVFSVDGTPIREFK 163 (280)
Q Consensus 91 -~~~~~EIDi-E~lG~~~g~~~~~~tn~~~~g~g----~~~~~~~l~f-d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 163 (280)
||..+|||| |++|+. +..+++++|..+.. .....+.... +..++||+|+|+|+|++|+|||||+++++++
T Consensus 109 ~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~ 185 (235)
T cd08023 109 GWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYT 185 (235)
T ss_pred CCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEc
Confidence 467899998 999985 34688889877643 2233455444 6889999999999999999999999999998
Q ss_pred cCCCCC-CCCCCCCCeEEEEecccCCCcccCCCccccCCCCCCeEEEEcEEEE
Q 023581 164 NSESIG-VPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFKA 215 (280)
Q Consensus 164 ~~~~~~-~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v 215 (280)
+..... ..+|+++||+|+||+++||+|+ |.. ......|..|.||+|||
T Consensus 186 ~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~~-~~~~~~p~~~~VDyVrv 234 (235)
T cd08023 186 NPNTDNGGQWPFDQPFYLILNLAVGGNWP---GPP-DDDTPFPATMEVDYVRV 234 (235)
T ss_pred ccccCCcccCCCCCCcEEEEEEEEcCCCC---CCC-CCCCCCCCEEEEEEEEE
Confidence 754321 2356669999999999999998 431 23456788999999997
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.98 E-value=3.1e-31 Score=241.82 Aligned_cols=170 Identities=26% Similarity=0.345 Sum_probs=127.0
Q ss_pred CCCeEEecCCcEEEEEEeCC-------------------CCCeEEEccceEeEEEEEEEEecC-CCCCccEEEEEeecC-
Q 023581 32 DGRAKIHNNGQFLTLSLDKA-------------------SGSGFQSKNEYLFGKIDMQLKLVP-GNSAGTVTAYYLKSP- 90 (280)
Q Consensus 32 ~~nv~~~~~G~~l~L~l~~~-------------------sGs~i~Sk~~~~YG~~eariKlp~-g~s~G~~~AFwl~~~- 90 (280)
++|+.+ .||+ |+|++.+. +++.+.|+.+|+|||||||||+++ + .|+||||||+++
T Consensus 43 ~~Nv~v-~dG~-L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVI-SNGI-LELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEE-eCCE-EEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 468877 7888 77776332 456889999999999999999865 5 799999999984
Q ss_pred --------CCCCCeeEE-EeCCCCC---CCc----eEEEeeeecCCCCC--c--------eeeEecCCCCCCCcEEEEEE
Q 023581 91 --------GSTWDEIDF-EFLGNLS---GDP----YTLHTNVFTNGKGN--R--------EQQFHLWFDPTAAFHTYSIL 144 (280)
Q Consensus 91 --------~~~~~EIDi-E~lG~~~---g~~----~~~~tn~~~~g~g~--~--------~~~~~l~fd~~~dfHtY~i~ 144 (280)
||.++|||| |.+|... +++ ..+|++++.++.+. + ...+.+++|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 688999999 8887531 222 24666555554331 1 12355678899999999999
Q ss_pred EeCCcEEEEECCeeEEEEecCCCCCCCCCCCCCeEEEEecccCC---------CcccCCCccccCCCCCCeEEEEcEEEE
Q 023581 145 WNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNAD---------DWATRGGLVKTDWTHAPFTASYRNFKA 215 (280)
Q Consensus 145 Wtp~~I~fyVDG~~vr~~~~~~~~~~~~P~~~Pm~l~lnlw~gg---------~Wat~GG~~~~d~~~~Pf~~~~~~~~v 215 (280)
|+|++|+|||||++++++.+. +. +.||.|.+++-.+. .|+ |+. .+.+.+|-.|+||+|||
T Consensus 199 W~~~~i~~yvDg~~~~~~~~~------~w-~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~--~~~~~fP~~m~VDyVRv 267 (269)
T cd02177 199 VNQDEIIWYVDGVEVGRKPNK------YW-HRPMNVTLSLGLRKPFVKFFDNKNNA--KAR--EKASDFPTSMYVDYVRV 267 (269)
T ss_pred EeCCEEEEEECCEEEEEEcCC------cc-ccccEEeeccccCcchhhhhccccCC--CCC--CccCcCCceEEEEEEEE
Confidence 999999999999999998742 33 37888888875543 244 333 25678999999999998
Q ss_pred E
Q 023581 216 D 216 (280)
Q Consensus 216 ~ 216 (280)
.
T Consensus 268 ~ 268 (269)
T cd02177 268 W 268 (269)
T ss_pred e
Confidence 4
No 10
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.98 E-value=3.2e-31 Score=244.47 Aligned_cols=181 Identities=20% Similarity=0.178 Sum_probs=126.6
Q ss_pred eecCCCeEEecCCcEEEEEEeC-------CCCCeEEE--ccceEeEEEEEEEEecCC-CCCccEEEEEeecC--------
Q 023581 29 TWGDGRAKIHNNGQFLTLSLDK-------ASGSGFQS--KNEYLFGKIDMQLKLVPG-NSAGTVTAYYLKSP-------- 90 (280)
Q Consensus 29 ~w~~~nv~~~~~G~~l~L~l~~-------~sGs~i~S--k~~~~YG~~eariKlp~g-~s~G~~~AFwl~~~-------- 90 (280)
.+.++|+.+ .+|+ |+|++.+ .++++|.| |+.|+||+||||||||.+ ...|+||||||+++
T Consensus 37 ~Y~~~nv~v-~~G~-L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~~ 114 (295)
T cd02180 37 WYDPDAVTT-INGS-LRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYLA 114 (295)
T ss_pred EecCcCeEe-cCCe-EEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeecccccccccccc
Confidence 556789887 6887 7777643 24678888 788999999999999974 23799999999984
Q ss_pred -----CCC------CCeeEE-EeCCCCCC-Cce---EEE----------------eeeecC------C-CCCcee-e---
Q 023581 91 -----GST------WDEIDF-EFLGNLSG-DPY---TLH----------------TNVFTN------G-KGNREQ-Q--- 127 (280)
Q Consensus 91 -----~~~------~~EIDi-E~lG~~~g-~~~---~~~----------------tn~~~~------g-~g~~~~-~--- 127 (280)
||. .+|||| |.+|.+.. ... ++| ..+|.. . .++..+ .
T Consensus 115 ~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 194 (295)
T cd02180 115 TTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAISC 194 (295)
T ss_pred cccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCcccccccc
Confidence 674 499998 99985431 111 111 111211 0 011101 0
Q ss_pred -EecCC----CCCCCcEEEEEEEeC-----CcEEEEECCeeEEEEecCCCC------CCCCCCCCCeEEEEecccCCCcc
Q 023581 128 -FHLWF----DPTAAFHTYSILWNP-----QRIVFSVDGTPIREFKNSESI------GVPFPKNQPMRIYSSLWNADDWA 191 (280)
Q Consensus 128 -~~l~f----d~~~dfHtY~i~Wtp-----~~I~fyVDG~~vr~~~~~~~~------~~~~P~~~Pm~l~lnlw~gg~Wa 191 (280)
..+.. ...++||+|+|+|+| ++|+|||||+++++++..... ...+|. +||+|+||+++||+|+
T Consensus 195 ~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~~-~P~ylILNlAvGg~w~ 273 (295)
T cd02180 195 VTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIPE-EPMYIILNLGISSNFQ 273 (295)
T ss_pred ccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccCC-CCeEEEEEEEeccccC
Confidence 01111 135799999999999 899999999999999864311 123554 9999999999999997
Q ss_pred cCCCccccCCCCCCeEEEEcEEEEE
Q 023581 192 TRGGLVKTDWTHAPFTASYRNFKAD 216 (280)
Q Consensus 192 t~GG~~~~d~~~~Pf~~~~~~~~v~ 216 (280)
|. +.+-...|..|+||||||.
T Consensus 274 ---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 274 ---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred ---CC-CcccCCCCCEEEEEEEEEE
Confidence 42 2345677999999999985
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.97 E-value=8.2e-31 Score=238.17 Aligned_cols=181 Identities=13% Similarity=0.134 Sum_probs=126.0
Q ss_pred eecCCCeEEecCCcEEEEEEeCC-----CCCeEEEccce--Ee----EEEEEEEEecCCC---CCccEEEEEeecC----
Q 023581 29 TWGDGRAKIHNNGQFLTLSLDKA-----SGSGFQSKNEY--LF----GKIDMQLKLVPGN---SAGTVTAYYLKSP---- 90 (280)
Q Consensus 29 ~w~~~nv~~~~~G~~l~L~l~~~-----sGs~i~Sk~~~--~Y----G~~eariKlp~g~---s~G~~~AFwl~~~---- 90 (280)
+++++|+.+..+|+ |.|+..+. ++++|.|+.++ .| |+||||||+|.+. ..|+||||||++.
T Consensus 42 ~~~~~n~~v~~dG~-L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNGT-LQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCCe-EEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 55678999865887 77776433 35788887554 33 4899999999841 3699999999984
Q ss_pred ----CCCCCeeEE-EeCCCCCCCceEEEeeeecCC---CCCceee-Ee-cCCCCCCCcEEEEEEEeC-----CcEEEEEC
Q 023581 91 ----GSTWDEIDF-EFLGNLSGDPYTLHTNVFTNG---KGNREQQ-FH-LWFDPTAAFHTYSILWNP-----QRIVFSVD 155 (280)
Q Consensus 91 ----~~~~~EIDi-E~lG~~~g~~~~~~tn~~~~g---~g~~~~~-~~-l~fd~~~dfHtY~i~Wtp-----~~I~fyVD 155 (280)
||..+|||| |..|.. +.+ +.++|... ....+.. .. ....+.++||+|+|+|++ ++|+||||
T Consensus 121 ~~~~WP~~GEIDImE~~~~~---~~~-~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvD 196 (259)
T cd02182 121 NGTNWPACGELDIMENVNGL---STG-YGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLD 196 (259)
T ss_pred CCCCCCccceeeeeeccCCC---Cce-EEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEEC
Confidence 788899998 999864 223 33444322 1111111 10 011245899999999997 99999999
Q ss_pred CeeEEEEecCCCC---CCCCCCCCCeEEEEecccCCCcccCCCccccCCCCCCeEEEEcEEEEE
Q 023581 156 GTPIREFKNSESI---GVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFKAD 216 (280)
Q Consensus 156 G~~vr~~~~~~~~---~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 216 (280)
|+++++++..... ..+.|+++||+|+||+++||+|+ |......-...|..|+||+|||.
T Consensus 197 G~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~--~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 197 GVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP--GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred CEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC--CCCCcccccCCCceEEEEEEEEe
Confidence 9999999864221 12234469999999999999998 32111123457899999999984
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.97 E-value=1.5e-29 Score=237.31 Aligned_cols=137 Identities=19% Similarity=0.228 Sum_probs=105.2
Q ss_pred CCeEEE--ccceEeEEEEEEEEecCCCCCccEEEEEeecC------CCCCCeeEE-EeCCCCCCCc-------eEEEeee
Q 023581 53 GSGFQS--KNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP------GSTWDEIDF-EFLGNLSGDP-------YTLHTNV 116 (280)
Q Consensus 53 Gs~i~S--k~~~~YG~~eariKlp~g~s~G~~~AFwl~~~------~~~~~EIDi-E~lG~~~g~~-------~~~~tn~ 116 (280)
.++|.| |++|+|||||+|||||.+ .|+||||||++. ||..+|||| |..|+....+ ..++.++
T Consensus 101 Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tl 178 (330)
T cd08024 101 SARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTL 178 (330)
T ss_pred EEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEE
Confidence 456778 688999999999999999 799999999985 788999998 9999754221 2456666
Q ss_pred ecCCCCC----ce---eeEecCCCCCCCcEEEEEEEeCCcEEEEECCeeEEEEecCC-------------------CCCC
Q 023581 117 FTNGKGN----RE---QQFHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSE-------------------SIGV 170 (280)
Q Consensus 117 ~~~g~g~----~~---~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~-------------------~~~~ 170 (280)
|...... +. .......+..++||+|+|+|+|++|+|||||++++++.... ....
T Consensus 179 H~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~ 258 (330)
T cd08024 179 HWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGK 258 (330)
T ss_pred EeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCc
Confidence 6432211 11 11122345678899999999999999999999999998521 1124
Q ss_pred CCCCCCCeEEEEecccCCCcc
Q 023581 171 PFPKNQPMRIYSSLWNADDWA 191 (280)
Q Consensus 171 ~~P~~~Pm~l~lnlw~gg~Wa 191 (280)
..|+++|++|+|||++||.|.
T Consensus 259 ~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 259 MAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CCCCCCCEEEEEEEEecCCCC
Confidence 579999999999999999875
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=6.3e-29 Score=232.09 Aligned_cols=134 Identities=17% Similarity=0.196 Sum_probs=99.2
Q ss_pred CCeEEE--ccceEeEEEEEEEEecCCCCCccEEEEEeecC------C-CCCCeeEE-EeCCCCCC----C---ceEEEee
Q 023581 53 GSGFQS--KNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP------G-STWDEIDF-EFLGNLSG----D---PYTLHTN 115 (280)
Q Consensus 53 Gs~i~S--k~~~~YG~~eariKlp~g~s~G~~~AFwl~~~------~-~~~~EIDi-E~lG~~~g----~---~~~~~tn 115 (280)
.|+|.| +++|+|||||+|||||.| .|+||||||++. | |..+|||| |..|+... . ..+++..
T Consensus 98 Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g 175 (321)
T cd02179 98 SARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGG 175 (321)
T ss_pred eeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEcc
Confidence 467888 488999999999999999 699999999986 3 78899999 99998521 0 0133333
Q ss_pred eecCCCC-Cce---eeEecCCCCCCCcEEEEEEEeCCcEEEEECCeeEEEEecCCC----------------CCCCCCCC
Q 023581 116 VFTNGKG-NRE---QQFHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSES----------------IGVPFPKN 175 (280)
Q Consensus 116 ~~~~g~g-~~~---~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~----------------~~~~~P~~ 175 (280)
.|..... .+. .......+..++||+|+|+|+|++|+|||||++++++..... .....|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD 255 (321)
T cd02179 176 PVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFD 255 (321)
T ss_pred cccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCC
Confidence 3322111 111 011112356789999999999999999999999999986321 12356999
Q ss_pred CCeEEEEecccCC
Q 023581 176 QPMRIYSSLWNAD 188 (280)
Q Consensus 176 ~Pm~l~lnlw~gg 188 (280)
+|++|+|||++||
T Consensus 256 ~~FyliLNlAVGG 268 (321)
T cd02179 256 KEFYLSLGVGVGG 268 (321)
T ss_pred CCeEEEEEEEecC
Confidence 9999999999987
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.1e-24 Score=205.50 Aligned_cols=155 Identities=26% Similarity=0.449 Sum_probs=128.5
Q ss_pred eeecCCCeEEecCCcEEEEEEeC-------CCCCeEEEccc--eEeEEEEEEEEecCCCCCccEEEEEeecC----CCCC
Q 023581 28 ITWGDGRAKIHNNGQFLTLSLDK-------ASGSGFQSKNE--YLFGKIDMQLKLVPGNSAGTVTAYYLKSP----GSTW 94 (280)
Q Consensus 28 ~~w~~~nv~~~~~G~~l~L~l~~-------~sGs~i~Sk~~--~~YG~~eariKlp~g~s~G~~~AFwl~~~----~~~~ 94 (280)
.+|..+++.+..+|. |.|.+++ .++++++|..+ |+||++|+|||+|.+ .|+||||||+++ +.-.
T Consensus 74 ~~w~~~~~~lt~~~~-l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~wp 150 (355)
T COG2273 74 LTWYVSNVVLTIGGT-LELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGGWP 150 (355)
T ss_pred cceeecceeEeeCCe-eeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCCCC
Confidence 477777788766654 7777753 46788999766 999999999999977 899999999985 3456
Q ss_pred CeeEEEeCCCCCCCceEEEeeeecCCCCCceeeEecCC-CCCCCcEEEEEEEeCCcEEEEECCeeEEEEecCCCCCCCCC
Q 023581 95 DEIDFEFLGNLSGDPYTLHTNVFTNGKGNREQQFHLWF-DPTAAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFP 173 (280)
Q Consensus 95 ~EIDiE~lG~~~g~~~~~~tn~~~~g~g~~~~~~~l~f-d~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~~~P 173 (280)
+|||||++|++.. +..+|+|.+.++.++.+......+ +..++||+|+++|.+++|+|||||++++++... ...|
T Consensus 151 ~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~~~ 225 (355)
T COG2273 151 DEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DYIP 225 (355)
T ss_pred cceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----ccCc
Confidence 8999999997653 346999999998887776666677 888999999999999999999999999998753 2357
Q ss_pred CCCCeEEEEecccCCCcc
Q 023581 174 KNQPMRIYSSLWNADDWA 191 (280)
Q Consensus 174 ~~~Pm~l~lnlw~gg~Wa 191 (280)
. .||++++|+|.++.+.
T Consensus 226 ~-~p~y~~~nl~~~~~~~ 242 (355)
T COG2273 226 Q-IPFYVLVNLWMGGYAG 242 (355)
T ss_pred C-CcceeEEeecccCccC
Confidence 7 9999999999998764
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.81 E-value=1.5e-20 Score=129.90 Aligned_cols=45 Identities=53% Similarity=1.247 Sum_probs=37.2
Q ss_pred CCccccccC---CCHHHHHHHHHHhhcCeEeecccCCCCCCCCCCCCc
Q 023581 233 RSRAWFSQE---LDSSSQNKLKWVQKNYMIYNYCTDTKRFPQGLPVEC 277 (280)
Q Consensus 233 ~~~~~~~~~---l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~~~~ec 277 (280)
++..||++. |+++|+++|+|||+||||||||+|++|||.++|+||
T Consensus 4 ~~~~w~~~~~~~L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 4 SSKSWWNQPYAQLSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp TTTSGGCSCCCS--HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CCcccccCcccCCCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 345799875 999999999999999999999999999998779999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.68 E-value=4.6e-16 Score=151.11 Aligned_cols=189 Identities=23% Similarity=0.326 Sum_probs=122.9
Q ss_pred cCCCeEEecCCcEEEEEEeCC-------CCCeEEE--ccceEeEEEEEEEEecCC-CCCccEEEEEeecC----------
Q 023581 31 GDGRAKIHNNGQFLTLSLDKA-------SGSGFQS--KNEYLFGKIDMQLKLVPG-NSAGTVTAYYLKSP---------- 90 (280)
Q Consensus 31 ~~~nv~~~~~G~~l~L~l~~~-------sGs~i~S--k~~~~YG~~eariKlp~g-~s~G~~~AFwl~~~---------- 90 (280)
+++.|.. .+|. |.|++++. .++.++| |+=|+-|++|++++||.. +..|+|||||++++
T Consensus 159 ~p~~vtt-~~G~-l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast 236 (504)
T PF03935_consen 159 DPDAVTT-ENGS-LVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGAST 236 (504)
T ss_pred cCCCcEe-eCCE-EEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCcccccccc
Confidence 3555654 6776 88888643 2455677 788889999999999865 36799999999974
Q ss_pred ---CC---------------------------------------------CCCeeEE-EeCCCCCC-Cc---eEEEeee-
Q 023581 91 ---GS---------------------------------------------TWDEIDF-EFLGNLSG-DP---YTLHTNV- 116 (280)
Q Consensus 91 ---~~---------------------------------------------~~~EIDi-E~lG~~~g-~~---~~~~tn~- 116 (280)
|| ...|||| |....... .. ..+|..-
T Consensus 237 ~g~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~ 316 (504)
T PF03935_consen 237 DGMWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPF 316 (504)
T ss_pred CceecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeeccc
Confidence 11 1358997 87643211 01 1233211
Q ss_pred -------------ecCCC-------CCceee-E----ec---CC--CCCCCcEEEEEEEeCC-----cEEEEECCeeEEE
Q 023581 117 -------------FTNGK-------GNREQQ-F----HL---WF--DPTAAFHTYSILWNPQ-----RIVFSVDGTPIRE 161 (280)
Q Consensus 117 -------------~~~g~-------g~~~~~-~----~l---~f--d~~~dfHtY~i~Wtp~-----~I~fyVDG~~vr~ 161 (280)
|.... |+.-|+ + .+ ++ ....+||+|++||.|. .|+|+|||+++++
T Consensus 317 d~~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twt 396 (504)
T PF03935_consen 317 DIWYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWT 396 (504)
T ss_pred ccCCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEE
Confidence 11000 011111 1 11 11 1237899999999874 8999999999999
Q ss_pred EecCCC------CCCCCCCCCCeEEEEecccCCCcccCCCccccCCC--CCCeEEEEcEEEEEEEEeCCCCCCCCC
Q 023581 162 FKNSES------IGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWT--HAPFTASYRNFKADACLWSNGKSSCAS 229 (280)
Q Consensus 162 ~~~~~~------~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~--~~Pf~~~~~~~~v~~c~~~~~~~~c~~ 229 (280)
+..... ....+|. .||+|++|+....+|+ .+||. .+|..|.||+|||..=. +..+-.|.+
T Consensus 397 i~a~Al~~~~~I~~R~Ip~-EPMyIIlNlgmS~sf~------~vd~~~L~FP~~M~IDYVRVYQ~~-~~~~vgCDP 464 (504)
T PF03935_consen 397 INAEALGPNPNIGQRPIPE-EPMYIILNLGMSSSFG------YVDWNHLCFPATMRIDYVRVYQPE-DAINVGCDP 464 (504)
T ss_pred EEhhhcCCCCCcCccccCc-CCceeeeccccccccC------ccccccccccceEEEeEEEEeccC-CCCeeeeCC
Confidence 986542 1245787 9999999999999996 34765 46888999999984321 111246865
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.60 E-value=7.7e-15 Score=134.63 Aligned_cols=148 Identities=25% Similarity=0.382 Sum_probs=96.1
Q ss_pred cCCcEEEEEEeCCC---------CCeEEEccceEeEEEEEEE-EecCCCCCccEEEEEeecC-CCCCCeeEE-EeCCCCC
Q 023581 39 NNGQFLTLSLDKAS---------GSGFQSKNEYLFGKIDMQL-KLVPGNSAGTVTAYYLKSP-GSTWDEIDF-EFLGNLS 106 (280)
Q Consensus 39 ~~G~~l~L~l~~~s---------Gs~i~Sk~~~~YG~~eari-Klp~g~s~G~~~AFwl~~~-~~~~~EIDi-E~lG~~~ 106 (280)
.+|. |.|.+|..+ .++|.||++|.+|++|+|+ |||.+ .|+||||||++. ||..+|||| |.++...
T Consensus 47 ~~g~-l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE~vn~~~ 123 (293)
T cd02181 47 NSGN-VYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGPNWPNGGEIDIIEGVNLQT 123 (293)
T ss_pred eCCe-EEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCCCCCCCCcEEEEeccCCCC
Confidence 5565 888886532 3679999999999999998 99998 899999999987 999999998 9998644
Q ss_pred CCceEEEeee----ecCC--CC-------------Ccee--------eEecCCCCCCCcEEEEEEEeCCcEEEEE---CC
Q 023581 107 GDPYTLHTNV----FTNG--KG-------------NREQ--------QFHLWFDPTAAFHTYSILWNPQRIVFSV---DG 156 (280)
Q Consensus 107 g~~~~~~tn~----~~~g--~g-------------~~~~--------~~~l~fd~~~dfHtY~i~Wtp~~I~fyV---DG 156 (280)
....++||.- -..+ .+ +... .+-..|+ ..+=-.|+++|+.+.|+.+. +.
T Consensus 124 ~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff~R~~ 202 (293)
T cd02181 124 SNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFFPRGS 202 (293)
T ss_pred ceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEEEEecCCC
Confidence 3333455420 0000 00 0000 1111222 23457999999999998554 22
Q ss_pred eeEEEEecCCC-------CCCCCCC--------CCCeEEEEecccCCCcc
Q 023581 157 TPIREFKNSES-------IGVPFPK--------NQPMRIYSSLWNADDWA 191 (280)
Q Consensus 157 ~~vr~~~~~~~-------~~~~~P~--------~~Pm~l~lnlw~gg~Wa 191 (280)
+|- .++.... +-..||. -++++|++|+---|+||
T Consensus 203 iP~-di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 203 IPA-DITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred CCc-ccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEEeecccccc
Confidence 221 2221111 1122442 17899999999999999
No 18
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=94.11 E-value=1.5 Score=34.75 Aligned_cols=65 Identities=17% Similarity=0.393 Sum_probs=37.9
Q ss_pred CCCCcEEEEEEEeCCcEEEEECCeeEEEEecCCCCCCCCCCCCCeEEEEecccCCCcccCCCccccCCCCCCeEEEEcEE
Q 023581 134 PTAAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNF 213 (280)
Q Consensus 134 ~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~ 213 (280)
+...||..++.|....+.+||||+++.+...... ...+...++.| |+. .....+|...++.+
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~--~~~~~~~~~~i-------------G~~---~~~~~~~~g~i~~~ 144 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN--ISLNSNGPLFI-------------GGS---GGGSSPFNGYIDDL 144 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEESS--SSTTSCCEEEE-------------SS----STT--B-EEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccCC--cCCCCcceEEE-------------eec---CCCCCceEEEEEEE
Confidence 3489999999999999999999998865432211 01111122222 221 12367888999898
Q ss_pred EEE
Q 023581 214 KAD 216 (280)
Q Consensus 214 ~v~ 216 (280)
+|.
T Consensus 145 ~i~ 147 (157)
T PF13385_consen 145 RIY 147 (157)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
No 19
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=93.12 E-value=3.9 Score=32.98 Aligned_cols=70 Identities=10% Similarity=0.165 Sum_probs=44.4
Q ss_pred CCCCcEEEEEEEeC--CcEEEEECCeeEEEEecCCCCCCCCCCCCCeEEEEecccCCCcccCCCccccCCCCCCeEEEEc
Q 023581 134 PTAAFHTYSILWNP--QRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYR 211 (280)
Q Consensus 134 ~~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~ 211 (280)
+...||...+.++. .+|++||||+++.+.... ..+...|+.+-..... ++ ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEEee
Confidence 34789999999998 799999999988654321 1222244443211111 11 12457888899
Q ss_pred EEEEEEEEe
Q 023581 212 NFKADACLW 220 (280)
Q Consensus 212 ~~~v~~c~~ 220 (280)
.++|..+..
T Consensus 122 evriy~~aL 130 (133)
T smart00560 122 EVRVYNRAL 130 (133)
T ss_pred EEEEecccc
Confidence 999877643
No 20
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=93.05 E-value=1 Score=37.89 Aligned_cols=120 Identities=18% Similarity=0.303 Sum_probs=60.7
Q ss_pred ecCCcEEEEEE--eCCCCCeEEEccceEeEEEEEEEEecCCCCCccEEEEEeecC-------CCCCCeeEEEeCCCCCCC
Q 023581 38 HNNGQFLTLSL--DKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP-------GSTWDEIDFEFLGNLSGD 108 (280)
Q Consensus 38 ~~~G~~l~L~l--~~~sGs~i~Sk~~~~YG~~eariKlp~g~s~G~~~AFwl~~~-------~~~~~EIDiE~lG~~~g~ 108 (280)
..||. |. .. ....++-+.++..|.=..+++.+|+.++ | -.++++-.. +...-|+.|.--+.....
T Consensus 28 v~dG~-l~-~~~~~~~~~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~~~ 101 (185)
T PF06439_consen 28 VKDGV-LV-SNGSSGSGGGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGTGL 101 (185)
T ss_dssp EETTE-EE--GGGGESSS--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCSTT
T ss_pred eeCCE-EE-ecccCCCCcceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCccCC
Confidence 46785 33 11 1233456888888888899999998444 2 333333222 234456665322111000
Q ss_pred ceEEEeeeecCCCCCceeeEecCCCCCCCcEEEEEEEeCCcEEEEECCeeEEEEecC
Q 023581 109 PYTLHTNVFTNGKGNREQQFHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKNS 165 (280)
Q Consensus 109 ~~~~~tn~~~~g~g~~~~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~ 165 (280)
+ .....++.. .............+..+||++.|.-..++|+.+|||++|-++...
T Consensus 102 ~-~~~G~~~~~-~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 102 P-NSTGSLYDE-PPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp T-TSTTSBTTT-B-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred C-CccceEEEe-ccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 0 000001100 000000001112346899999999999999999999999988854
No 21
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=90.55 E-value=5 Score=34.40 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=50.4
Q ss_pred EEEEEEEecCCCCCccEEEEEeecCCCCCCeeEEEeCCCCCCCceEEEeeeecCCCCCceeeEecC-C-CCCCCcEEEEE
Q 023581 66 KIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGNREQQFHLW-F-DPTAAFHTYSI 143 (280)
Q Consensus 66 ~~eariKlp~g~s~G~~~AFwl~~~~~~~~EIDiE~lG~~~g~~~~~~tn~~~~g~g~~~~~~~l~-f-d~~~dfHtY~i 143 (280)
.+.+.+|..+. +.|+.-++.-. + ...++-++.-|.. + .+. ++..+..+..+..... . -....||..++
T Consensus 55 si~~~~r~~~~-~~g~L~si~~~-~--~~~~l~v~l~g~~---~-~~~--~~~~~~~g~~~~~~f~~~~l~dg~WH~lal 124 (184)
T smart00210 55 SLLTTFRQTPK-SRGVLFAIYDA-Q--NVRQFGLEVDGRA---N-TLL--LRYQGVDGKQHTVSFRNLPLADGQWHKLAL 124 (184)
T ss_pred EEEEEEEeCCC-CCeEEEEEEcC-C--CcEEEEEEEeCCc---c-EEE--EEECCCCCcEEEEeecCCccccCCceEEEE
Confidence 36677777543 35655555432 2 3345555655532 1 233 2222222222222111 1 23578999999
Q ss_pred EEeCCcEEEEECCeeEEEEe
Q 023581 144 LWNPQRIVFSVDGTPIREFK 163 (280)
Q Consensus 144 ~Wtp~~I~fyVDG~~vr~~~ 163 (280)
.+..+++++|||++++.+..
T Consensus 125 ~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 125 SVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EEeCCEEEEEECCcccccee
Confidence 99999999999999987754
No 22
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=90.12 E-value=12 Score=32.64 Aligned_cols=71 Identities=20% Similarity=0.283 Sum_probs=40.5
Q ss_pred CCCCcEEEEEEEe--CCcEEEEECCeeEEEEecCCCCCCCCCCCCCeEEEEecccCCCcccCCCccccCCCCCCeEEEEc
Q 023581 134 PTAAFHTYSILWN--PQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYR 211 (280)
Q Consensus 134 ~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~ 211 (280)
...+||...+.|+ ..++.+||||+++.. . .-..+..++. +-.|+|.-- -+.+ ||.. | ....|.-.++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~~-~-~~~~g~~i~~--~G~lvlGq~-qd~~---gg~f--~-~~~~f~G~i~ 156 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGVR-K-GLAKGYTVKP--GGSIILGQE-QDSY---GGGF--D-ATQSFVGEIG 156 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEccc-c-cccCCcEECC--CCEEEEEec-ccCC---CCCC--C-CCcceeEEEe
Confidence 4578999999997 447999999998621 1 1111222332 233444431 1222 3322 3 2345777888
Q ss_pred EEEE
Q 023581 212 NFKA 215 (280)
Q Consensus 212 ~~~v 215 (280)
.|+|
T Consensus 157 ~v~i 160 (206)
T smart00159 157 DLNM 160 (206)
T ss_pred eeEE
Confidence 8877
No 23
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=89.51 E-value=1.7 Score=39.22 Aligned_cols=77 Identities=17% Similarity=0.284 Sum_probs=48.5
Q ss_pred EEEEEEEecCCC-----CCccEEEEEeecC---------------CC-CCCeeEE-EeCCCCCCCceEEEeeeec-CCC-
Q 023581 66 KIDMQLKLVPGN-----SAGTVTAYYLKSP---------------GS-TWDEIDF-EFLGNLSGDPYTLHTNVFT-NGK- 121 (280)
Q Consensus 66 ~~eariKlp~g~-----s~G~~~AFwl~~~---------------~~-~~~EIDi-E~lG~~~g~~~~~~tn~~~-~g~- 121 (280)
-|-.+++||... ...=.||+||++. |. .++|+|| |.|... +. .+.+.+|. +|.
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g--~~-k~~St~H~~qG~~ 178 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSG--DD-KLKSTFHDYQGTD 178 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCC--Cc-eeEEEEecccCcc
Confidence 377788888832 1345899999974 43 6999998 999763 33 45666665 332
Q ss_pred -----CCceeeEecCCCCCCCcEEEEEEEeCC
Q 023581 122 -----GNREQQFHLWFDPTAAFHTYSILWNPQ 148 (280)
Q Consensus 122 -----g~~~~~~~l~fd~~~dfHtY~i~Wtp~ 148 (280)
++...-+. -|++..-++++.++.+
T Consensus 179 ~~~~g~G~~~yf~---RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 179 DINGGGGSSDYFK---RPTSGTMKVAVIFDSS 207 (235)
T ss_pred ccCCCCCCCCccc---CCCCCCeEEEEEEcCC
Confidence 11111111 2567788888888654
No 24
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=87.28 E-value=1.1 Score=39.06 Aligned_cols=100 Identities=24% Similarity=0.359 Sum_probs=51.8
Q ss_pred CCCCeEEEccce---EeE-EEEEEEEecCCCCCccEEEEEeecCCCCCCeeEEEeCCCCCCCceEEEeeeecCCCCCcee
Q 023581 51 ASGSGFQSKNEY---LFG-KIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGNREQ 126 (280)
Q Consensus 51 ~sGs~i~Sk~~~---~YG-~~eariKlp~g~s~G~~~AFwl~~~~~~~~EIDiE~lG~~~g~~~~~~tn~~~~g~g~~~~ 126 (280)
..|+++-|++.- .+| +....||+..| |...-.+.-+. ..--++|-.-. .|+ +-.++ .|.+.+ .
T Consensus 16 w~gse~ys~~~~~~S~~gW~ls~~~RV~~G---~~n~~yyAnG~--~r~l~~lsvn~--sG~---LvA~L--~g~ss~-~ 82 (198)
T PF09264_consen 16 WGGSELYSKQTELNSQQGWSLSWESRVVSG---GCNTNYYANGS--KRYLPILSVNE--SGS---LVAEL--EGQSSN-T 82 (198)
T ss_dssp TTEEEEECCCHHHHCCC-EEEEEEEEEEEE---S-EEEEEEESS--EEEEEEEEE-T--TS----EEEEE--TTS-S--E
T ss_pred cccchhhhhhhhhhhhcCcceeeeEEEecC---cceeEEEcCCc--eEEEEEEEEcC--CCC---EEEEE--ecCCCc-E
Confidence 567777776432 366 68888888776 55555444332 11112221111 111 11111 122211 1
Q ss_pred eEecCCCCCCCcEEEEEEEeC--CcEEEEECCeeEEEEe
Q 023581 127 QFHLWFDPTAAFHTYSILWNP--QRIVFSVDGTPIREFK 163 (280)
Q Consensus 127 ~~~l~fd~~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~ 163 (280)
.+.+....-.+||.|.|.-.| ..-.|||||++|++..
T Consensus 83 ~~~~~~~di~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 83 LLATTGADIHGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp EEE-CHHHHCSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred EEecccccccceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 122211112589999999988 8899999999999753
No 25
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=86.05 E-value=22 Score=30.81 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=23.7
Q ss_pred CCCCcEEEEEEEe--CCcEEEEECCeeEEE
Q 023581 134 PTAAFHTYSILWN--PQRIVFSVDGTPIRE 161 (280)
Q Consensus 134 ~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~ 161 (280)
....||...+.|+ ..++.+||||+++.+
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~ 117 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVR 117 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecc
Confidence 5678999999998 457999999998753
No 26
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=85.46 E-value=17 Score=28.94 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=48.0
Q ss_pred EeEEEEEEEEecCCCCCccEEEEEeecCCCCCCeeEEEeCCCCCCCceEEEeeeecCCCCCceeeEecCC-CCCCCcEEE
Q 023581 63 LFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGNREQQFHLWF-DPTAAFHTY 141 (280)
Q Consensus 63 ~YG~~eariKlp~g~s~G~~~AFwl~~~~~~~~EIDiE~lG~~~g~~~~~~tn~~~~g~g~~~~~~~l~f-d~~~dfHtY 141 (280)
....+++++|.... .|+. |++.+. ...+.+-+|... | .+...+..+ .....+.... -....||..
T Consensus 20 ~~~~i~~~frt~~~--~g~l--~~~~~~-~~~~~~~l~l~~---g---~l~~~~~~g---~~~~~~~~~~~v~dg~Wh~v 85 (151)
T cd00110 20 TRLSISFSFRTTSP--NGLL--LYAGSQ-NGGDFLALELED---G---RLVLRYDLG---SGSLVLSSKTPLNDGQWHSV 85 (151)
T ss_pred ceeEEEEEEEeCCC--CeEE--EEecCC-CCCCEEEEEEEC---C---EEEEEEcCC---cccEEEEccCccCCCCEEEE
Confidence 34567777776654 4654 333222 134555566653 2 233322222 1222233221 235689999
Q ss_pred EEEEeCCcEEEEECCeeEEE
Q 023581 142 SILWNPQRIVFSVDGTPIRE 161 (280)
Q Consensus 142 ~i~Wtp~~I~fyVDG~~vr~ 161 (280)
.+.+....++++|||....+
T Consensus 86 ~i~~~~~~~~l~VD~~~~~~ 105 (151)
T cd00110 86 SVERNGRSVTLSVDGERVVE 105 (151)
T ss_pred EEEECCCEEEEEECCccEEe
Confidence 99999999999999985433
No 27
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=75.87 E-value=28 Score=30.33 Aligned_cols=55 Identities=13% Similarity=0.316 Sum_probs=35.8
Q ss_pred ecCCCCCCCcEEEEE--EEeC---CcEEEEECCeeEEEEecCCCCCCCCCCCCCeEEEEecccC
Q 023581 129 HLWFDPTAAFHTYSI--LWNP---QRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNA 187 (280)
Q Consensus 129 ~l~fd~~~dfHtY~i--~Wtp---~~I~fyVDG~~vr~~~~~~~~~~~~P~~~Pm~l~lnlw~g 187 (280)
.+.......||.+.| .|.+ ..|..++||+++..+.... .++.....++.+.|--.
T Consensus 145 ~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~ 204 (224)
T PF14099_consen 145 DLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRS 204 (224)
T ss_dssp ECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEH
T ss_pred cCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECC
Confidence 333344588999986 5765 5799999999998887632 12223566777766543
No 28
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=66.93 E-value=27 Score=31.15 Aligned_cols=60 Identities=27% Similarity=0.436 Sum_probs=38.3
Q ss_pred CCcEEEEEEEeCCcEEEEECCeeEEEEecCCCCCCCCCCCCCeEEEEecccCCCcccCCCccccCCCCCCeEEEEcEEEE
Q 023581 136 AAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYRNFKA 215 (280)
Q Consensus 136 ~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v 215 (280)
..|+.-.+.=....|.|.|||.+|........ ...|- -.+|++..- .=+|.+|.|++++|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~--~~gPv-----------------l~~G~IGfR-qMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGS--TYGPV-----------------LRGGRIGFR-QMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SS--SSSS--------------------SBEEEEE-EETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCC--ccCCc-----------------ccCcEeeee-ccchhhhhhccccC
Confidence 36777788889999999999999999875431 11232 014554322 24799999999986
No 29
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=63.66 E-value=64 Score=28.02 Aligned_cols=86 Identities=17% Similarity=0.300 Sum_probs=44.5
Q ss_pred CCCCcEEEEEEEeC--CcEEEEECCeeEEEEecCCCCCCCCCCCCCeEEEEecccCCCcccCCCccccCCCCCCeEEEEc
Q 023581 134 PTAAFHTYSILWNP--QRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWTHAPFTASYR 211 (280)
Q Consensus 134 ~~~dfHtY~i~Wtp--~~I~fyVDG~~vr~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~ 211 (280)
....||.+.+.|+. ..+.+|+||+....-. -..+...|. . -.++|.---. .-||.. | ..-.|.-.+.
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~--~~~g~~i~~-g-G~~vlGQeQd----~~gG~f--d-~~q~F~G~i~ 150 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTG--LATGHSIPG-G-GTLVLGQEQD----SYGGGF--D-ESQAFVGEIS 150 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEE--SSTT--B-S-S-EEEEESS-BS----BTTBTC--S-GGGB--EEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEeccccc--ccCCceECC-C-CEEEECcccc----ccCCCc--C-CccEeeEEEe
Confidence 35789999999976 6899999999543322 122334443 2 2344443211 124422 3 3457777777
Q ss_pred EEEEEEEEeCCCCCCCCCCCcCCccccccCCCHHHHHHHHH
Q 023581 212 NFKADACLWSNGKSSCASSKSRSRAWFSQELDSSSQNKLKW 252 (280)
Q Consensus 212 ~~~v~~c~~~~~~~~c~~~~~~~~~~~~~~l~~~~~~~~~~ 252 (280)
+|++ |+..|++.|+++|..
T Consensus 151 ~~~i----------------------Wd~vLs~~eI~~l~~ 169 (195)
T PF00354_consen 151 DFNI----------------------WDRVLSPEEIRALAS 169 (195)
T ss_dssp EEEE----------------------ESS---HHHHHHHHH
T ss_pred ceEE----------------------EeeeCCHHHHHHHHh
Confidence 7765 455677777777653
No 30
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=54.81 E-value=1.5e+02 Score=25.99 Aligned_cols=132 Identities=14% Similarity=0.221 Sum_probs=66.7
Q ss_pred cceEeEEEEEEEEecCCCCCccEEEEEeecCCC----------CCCeeEEEeCCCCCCCceEEEeeeecCCCCCceeeEe
Q 023581 60 NEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGS----------TWDEIDFEFLGNLSGDPYTLHTNVFTNGKGNREQQFH 129 (280)
Q Consensus 60 ~~~~YG~~eariKlp~g~s~G~~~AFwl~~~~~----------~~~EIDiE~lG~~~g~~~~~~tn~~~~g~g~~~~~~~ 129 (280)
..+.-|.+-+|.|.... . -+-|++-.++.. ..+++=+|+.+.....-+...+.+...+.
T Consensus 30 k~L~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~-------- 98 (190)
T PF02973_consen 30 KKLEEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGG-------- 98 (190)
T ss_dssp CT-SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SE--------
T ss_pred hcccccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEeccc--------
Confidence 44556788888886443 3 455666665511 11266667776543332322222111110
Q ss_pred cCCCCCCCcEEEEEEEe--CCcEEEEECCeeEEEEecCCCCCCCCCCCC--CeEEEEecccCCCcccCCCccccCCCCCC
Q 023581 130 LWFDPTAAFHTYSILWN--PQRIVFSVDGTPIREFKNSESIGVPFPKNQ--PMRIYSSLWNADDWATRGGLVKTDWTHAP 205 (280)
Q Consensus 130 l~fd~~~dfHtY~i~Wt--p~~I~fyVDG~~vr~~~~~~~~~~~~P~~~--Pm~l~lnlw~gg~Wat~GG~~~~d~~~~P 205 (280)
-+ ....||+-++.=+ ..+.++|+||..+.+..... ..|-.+- +=.+.+ |+- .++|. ...|
T Consensus 99 ~~--~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~~~n~~~i----G~t--~R~g~-----~~y~ 162 (190)
T PF02973_consen 99 YK--NNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIPGLNSVQI----GGT--NRAGS-----NAYP 162 (190)
T ss_dssp ET--TEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGSTT--EEEE----SSE--EETTE-----EES-
T ss_pred cc--CCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCcCCceEEE----cce--EeCCC-----ceec
Confidence 01 2346888888876 66899999998888775432 1221111 112222 211 12332 3579
Q ss_pred eEEEEcEEEEEEE
Q 023581 206 FTASYRNFKADAC 218 (280)
Q Consensus 206 f~~~~~~~~v~~c 218 (280)
|.-.+++++|..+
T Consensus 163 f~G~I~~l~iYn~ 175 (190)
T PF02973_consen 163 FNGTIDNLKIYNR 175 (190)
T ss_dssp -EEEEEEEEEESS
T ss_pred ccceEEEEEEEcC
Confidence 9999999998554
No 31
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=52.59 E-value=53 Score=27.04 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=17.8
Q ss_pred cCCCeEEecCCcEEEEEEeCCCCCe
Q 023581 31 GDGRAKIHNNGQFLTLSLDKASGSG 55 (280)
Q Consensus 31 ~~~nv~~~~~G~~l~L~l~~~sGs~ 55 (280)
..+++.+...|..+.+.-|...|++
T Consensus 33 ~qs~~qv~g~G~V~~vLpdd~~Gsr 57 (131)
T PF11948_consen 33 QQSDVQVSGCGTVVKVLPDDNKGSR 57 (131)
T ss_pred hccCeeEeccEEEEEECcccCCCCc
Confidence 4567888777876666667777776
No 32
>smart00282 LamG Laminin G domain.
Probab=48.67 E-value=72 Score=25.00 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=23.3
Q ss_pred CCCcEEEEEEEeCCcEEEEECCeeEEE
Q 023581 135 TAAFHTYSILWNPQRIVFSVDGTPIRE 161 (280)
Q Consensus 135 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~ 161 (280)
...||.-.|.-....++.+|||.....
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~ 87 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVS 87 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCcccc
Confidence 468999999999999999999975543
No 33
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=44.11 E-value=1.4e+02 Score=22.53 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=27.1
Q ss_pred CCCCcEEEEEEEeCCcEEEEECCeeEEEEec
Q 023581 134 PTAAFHTYSILWNPQRIVFSVDGTPIREFKN 164 (280)
Q Consensus 134 ~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~ 164 (280)
....||.-.+.=....++..||+........
T Consensus 52 ~dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~ 82 (128)
T PF02210_consen 52 NDGQWHKVSISRDGNRVTLTVDGQSVSSESL 82 (128)
T ss_dssp TSSSEEEEEEEEETTEEEEEETTSEEEEEES
T ss_pred cccceeEEEEEEeeeeEEEEecCccceEEec
Confidence 3577999999999999999999998877664
No 34
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=42.14 E-value=25 Score=36.43 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=37.5
Q ss_pred CCCcEEEEEEEeCCcEEEEECCeeEEEEecCCCCCCCCCCCCCeEEEEecccCCCcc
Q 023581 135 TAAFHTYSILWNPQRIVFSVDGTPIREFKNSESIGVPFPKNQPMRIYSSLWNADDWA 191 (280)
Q Consensus 135 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~~~~~P~~~Pm~l~lnlw~gg~Wa 191 (280)
.++||.|.+.-.--.++.||||+-..-..-. .+||- .|.++-..|=+|-=|.
T Consensus 441 D~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~----ddwpl-Hpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 441 DNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT----DDWPL-HPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhheeEEeecCceEEEEEcCcccCCceec----cCCcc-CcccccceeEEeeecc
Confidence 5899999999976669999999755322211 34776 6666777776777787
No 35
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=34.01 E-value=69 Score=24.24 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=26.8
Q ss_pred CCCeEEecCCcEEEEEEeCCCCCeEEEccceEeEEEEEEEEecCC
Q 023581 32 DGRAKIHNNGQFLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPG 76 (280)
Q Consensus 32 ~~nv~~~~~G~~l~L~l~~~sGs~i~Sk~~~~YG~~eariKlp~g 76 (280)
++.|.+.-.+..|+|+..+..-..-.....+.||.|+=++.||.+
T Consensus 21 kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~ 65 (87)
T cd06482 21 PDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPG 65 (87)
T ss_pred HHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCC
Confidence 445555444445777764422111011235789999999999975
No 36
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=32.06 E-value=1.1e+02 Score=22.43 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=31.2
Q ss_pred cCCCeEEecCCcEEEEEEeCCCCCeEEEccceEeEEEEEEEEecCCCCCccEEE
Q 023581 31 GDGRAKIHNNGQFLTLSLDKASGSGFQSKNEYLFGKIDMQLKLVPGNSAGTVTA 84 (280)
Q Consensus 31 ~~~nv~~~~~G~~l~L~l~~~sGs~i~Sk~~~~YG~~eariKlp~g~s~G~~~A 84 (280)
.+++|.+.-++..|.++..+..... ...+.+|+|+=++.||..-...-+.|
T Consensus 19 ~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~vd~~~i~A 69 (83)
T cd06526 19 KPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEGVDPDSVTS 69 (83)
T ss_pred CHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCCCChHHeEE
Confidence 4566666555666888775432211 34567899999999997632333343
No 37
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=31.29 E-value=82 Score=23.55 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=29.2
Q ss_pred cCCCeEEecCCcEEEEEEeCCCCC----eEEEccceEeEEEEEEEEecCC
Q 023581 31 GDGRAKIHNNGQFLTLSLDKASGS----GFQSKNEYLFGKIDMQLKLVPG 76 (280)
Q Consensus 31 ~~~nv~~~~~G~~l~L~l~~~sGs----~i~Sk~~~~YG~~eariKlp~g 76 (280)
.++++.+.-+|..|.++..+.... .+. .+.+.+|.|+-+++||..
T Consensus 23 ~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~-~~e~~~g~f~R~~~LP~~ 71 (90)
T cd06470 23 SEDDLEIEVENNQLTVTGKKADEENEEREYL-HRGIAKRAFERSFNLADH 71 (90)
T ss_pred CHHHeEEEEECCEEEEEEEEcccccCCCcEE-EEEEeceEEEEEEECCCC
Confidence 456677766666677776443221 121 235679999999999975
No 38
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=24.90 E-value=1e+02 Score=24.28 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=24.0
Q ss_pred CCCCcEEEEEEEeCCcEEEEECCeeEEEEe
Q 023581 134 PTAAFHTYSILWNPQRIVFSVDGTPIREFK 163 (280)
Q Consensus 134 ~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 163 (280)
+.++-|++.+. ..+.++++|||+++-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 46788888888 888999999999996544
No 39
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=23.50 E-value=1.5e+02 Score=25.08 Aligned_cols=35 Identities=26% Similarity=0.553 Sum_probs=26.8
Q ss_pred eeEecCCCCCCCcEEEEEEEeCCcEEEEECCeeEEE
Q 023581 126 QQFHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIRE 161 (280)
Q Consensus 126 ~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~ 161 (280)
.++++|.- +.+=|.|+|.-..+.+..|++|..+++
T Consensus 93 k~~~~W~~-t~dg~~~RivL~kdtm~~w~NG~~l~T 127 (187)
T KOG4352|consen 93 KQYRLWLY-TDDGQEYRIVLKKDTMSLWVNGDELRT 127 (187)
T ss_pred hheeEEEE-ecCCceEEEEEeccceeeEEcCccccc
Confidence 45555532 334499999999999999999988875
No 40
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=22.60 E-value=1.6e+02 Score=23.32 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=33.2
Q ss_pred eeecCCCCCceeeEe-cCCCCCCCcEEEEEEEeCCcEEEEECCeeEEEEe
Q 023581 115 NVFTNGKGNREQQFH-LWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFK 163 (280)
Q Consensus 115 n~~~~g~g~~~~~~~-l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 163 (280)
|.+.+|.-+.|++.. .+|.+ .+...-.|.=++++...+|||+++.++.
T Consensus 56 Ns~~~g~Wg~Eer~~~~pf~~-g~~F~l~i~~~~~~f~i~vng~~~~~F~ 104 (127)
T cd00070 56 NSFLNGNWGPEERSGGFPFQP-GQPFELTILVEEDKFQIFVNGQHFFSFP 104 (127)
T ss_pred cCCCCCEecHhhccCCCCCCC-CCeEEEEEEEcCCEEEEEECCEeEEEec
Confidence 333444445555543 45554 3445888999999999999999998776
No 41
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=22.53 E-value=3.2e+02 Score=28.63 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=25.4
Q ss_pred CCCcEEEEEEEeCCcEEEEECCeeEEEEe
Q 023581 135 TAAFHTYSILWNPQRIVFSVDGTPIREFK 163 (280)
Q Consensus 135 ~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~ 163 (280)
...||+-++--+.+.|+=++||+++.+..
T Consensus 610 ~~~WhtltL~~~g~~~ta~lng~~l~~~~ 638 (669)
T PF02057_consen 610 AGKWHTLTLTISGSTATAMLNGTVLWTDV 638 (669)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEEEEEE
T ss_pred CCeEEEEEEEEECCEEEEEECCEEeEEec
Confidence 47799999999999999999999998754
No 42
>PF10916 DUF2712: Protein of unknown function (DUF2712); InterPro: IPR020208 This entry represents a group of uncharacterised proteins.
Probab=21.89 E-value=2.7e+02 Score=23.36 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=12.9
Q ss_pred EEEEEEec-CCCCCccEEEEEe
Q 023581 67 IDMQLKLV-PGNSAGTVTAYYL 87 (280)
Q Consensus 67 ~eariKlp-~g~s~G~~~AFwl 87 (280)
+-+++.-. .| .|+..+|||
T Consensus 64 WKV~l~~StEG--kGTi~tfwL 83 (146)
T PF10916_consen 64 WKVNLTYSTEG--KGTIYTFWL 83 (146)
T ss_pred cEEeccccccc--cceEEEEee
Confidence 34445432 44 799999999
No 43
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=21.81 E-value=3.3e+02 Score=21.41 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=32.8
Q ss_pred eeecCCCCCceee-EecCCCCCCCcEEEEEEEeCCcEEEEECCeeEEEEec
Q 023581 115 NVFTNGKGNREQQ-FHLWFDPTAAFHTYSILWNPQRIVFSVDGTPIREFKN 164 (280)
Q Consensus 115 n~~~~g~g~~~~~-~~l~fd~~~dfHtY~i~Wtp~~I~fyVDG~~vr~~~~ 164 (280)
|.+.+|.-+.|++ ...+|.+... -+-.|.=++++...+|||+.+..+..
T Consensus 61 Ns~~~g~Wg~Ee~~~~~pf~~g~~-F~i~I~~~~~~f~I~vng~~~~~F~~ 110 (133)
T PF00337_consen 61 NSRINGKWGQEERESPFPFQPGQP-FEIRIRVEEDGFKIYVNGKHFCSFPH 110 (133)
T ss_dssp EEEETTEE-SEEEESSTSSTTTSE-EEEEEEEESSEEEEEETTEEEEEEE-
T ss_pred eceECCEeccceeeeeeeecCCce-EEEEEEEecCeeEEEECCeEEEEeeC
Confidence 3344444445555 4455555444 46778889999999999999988874
No 44
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=21.44 E-value=1.6e+02 Score=20.83 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=29.0
Q ss_pred cCCCeEEecCCcEEEEEEeCCCCC---eEEEccceEeEEEEEEEEecCCC
Q 023581 31 GDGRAKIHNNGQFLTLSLDKASGS---GFQSKNEYLFGKIDMQLKLVPGN 77 (280)
Q Consensus 31 ~~~nv~~~~~G~~l~L~l~~~sGs---~i~Sk~~~~YG~~eariKlp~g~ 77 (280)
.++++.+.-++..|.++..+.... .-.......+|.|+-+++||..-
T Consensus 19 ~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~v 68 (88)
T cd06464 19 KKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDV 68 (88)
T ss_pred CHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCc
Confidence 345666655556577766443211 12234666789999999999863
No 45
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=20.57 E-value=2.7e+02 Score=22.69 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=26.8
Q ss_pred CCCeEEecCCcEEEEEEeCCCC----CeEEEccceEeEEEEEEEEecCC
Q 023581 32 DGRAKIHNNGQFLTLSLDKASG----SGFQSKNEYLFGKIDMQLKLVPG 76 (280)
Q Consensus 32 ~~nv~~~~~G~~l~L~l~~~sG----s~i~Sk~~~~YG~~eariKlp~g 76 (280)
++.|.+.-.++.|.|+.++... ..-.-.....||.|+-++.||..
T Consensus 63 kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~ 111 (146)
T COG0071 63 KEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEK 111 (146)
T ss_pred hHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECccc
Confidence 4455555455556666544321 11222345569999999999976
Done!