Query 023582
Match_columns 280
No_of_seqs 120 out of 1376
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:07:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 5.9E-40 1.3E-44 307.6 16.8 226 30-270 32-257 (437)
2 PTZ00206 amino acid transporte 100.0 7.6E-34 1.6E-38 271.2 19.3 224 34-270 58-285 (467)
3 PF01490 Aa_trans: Transmembra 100.0 1.9E-32 4.1E-37 256.5 4.7 223 34-272 1-223 (409)
4 KOG1304 Amino acid transporter 100.0 9.2E-31 2E-35 242.9 13.4 219 33-272 44-272 (449)
5 PLN03074 auxin influx permease 100.0 9.5E-30 2.1E-34 242.7 18.4 218 33-275 43-268 (473)
6 KOG1305 Amino acid transporter 99.9 3.1E-25 6.8E-30 207.2 11.4 220 34-271 4-224 (411)
7 KOG4303 Vesicular inhibitory a 99.9 2E-25 4.3E-30 198.2 1.5 217 30-270 111-331 (524)
8 COG0814 SdaC Amino acid permea 99.9 8.5E-23 1.8E-27 192.3 17.5 218 34-272 7-224 (415)
9 PRK10483 tryptophan permease; 99.7 6.9E-16 1.5E-20 144.3 18.1 213 32-270 7-221 (414)
10 PRK09664 tryptophan permease T 99.7 1.1E-15 2.4E-20 142.8 17.5 213 34-270 7-222 (415)
11 PF03222 Trp_Tyr_perm: Tryptop 99.6 1.1E-14 2.3E-19 136.5 17.8 209 35-269 2-212 (394)
12 PRK15132 tyrosine transporter 99.6 2E-14 4.3E-19 134.7 18.9 205 37-270 4-210 (403)
13 TIGR00837 araaP aromatic amino 99.6 3.5E-14 7.6E-19 132.4 14.4 204 42-269 3-206 (381)
14 PRK13629 threonine/serine tran 99.4 1.7E-11 3.8E-16 115.1 16.5 210 42-270 25-238 (443)
15 TIGR00814 stp serine transport 99.3 1.5E-10 3.2E-15 108.7 16.7 201 42-264 9-209 (397)
16 KOG3832 Predicted amino acid t 99.0 6.9E-09 1.5E-13 87.2 10.5 220 37-270 13-302 (319)
17 TIGR00912 2A0309 spore germina 98.6 1.7E-06 3.6E-11 80.1 15.7 204 35-270 2-208 (359)
18 PRK11049 D-alanine/D-serine/gl 98.5 1.5E-05 3.4E-10 76.5 18.7 220 31-271 17-241 (469)
19 PRK10655 potE putrescine trans 98.4 3.3E-05 7.1E-10 73.5 19.4 213 33-271 5-219 (438)
20 PRK10249 phenylalanine transpo 98.4 2.1E-05 4.5E-10 75.4 18.0 216 31-270 18-238 (458)
21 TIGR01773 GABAperm gamma-amino 98.4 3.1E-05 6.6E-10 74.0 18.4 110 32-147 10-120 (452)
22 TIGR00905 2A0302 transporter, 98.4 5E-05 1.1E-09 73.0 19.2 218 33-269 6-227 (473)
23 PRK10435 cadB lysine/cadaverin 98.3 3.4E-05 7.4E-10 73.4 17.8 214 32-271 3-217 (435)
24 TIGR00909 2A0306 amino acid tr 98.3 3.9E-05 8.4E-10 72.6 17.3 217 33-270 2-224 (429)
25 PRK10644 arginine:agmatin anti 98.3 5.9E-05 1.3E-09 71.9 18.5 215 31-271 5-221 (445)
26 PRK10238 aromatic amino acid t 98.3 5E-05 1.1E-09 72.7 17.9 216 31-270 9-229 (456)
27 PRK10580 proY putative proline 98.3 0.00014 2.9E-09 69.7 20.4 220 30-271 5-229 (457)
28 PF03845 Spore_permease: Spore 98.2 0.00014 3E-09 66.4 18.4 199 36-270 2-204 (320)
29 PRK15049 L-asparagine permease 98.2 0.00013 2.9E-09 70.7 18.6 94 32-131 26-120 (499)
30 PRK11387 S-methylmethionine tr 98.2 0.00016 3.5E-09 69.5 19.0 106 31-141 11-117 (471)
31 TIGR03810 arg_ornith_anti argi 98.2 0.0002 4.4E-09 68.8 19.3 221 34-271 1-225 (468)
32 TIGR00913 2A0310 amino acid pe 98.2 0.00013 2.7E-09 70.2 17.9 215 34-270 2-226 (478)
33 PRK10836 lysine transporter; P 98.2 0.00018 3.9E-09 69.6 18.9 98 26-128 7-105 (489)
34 TIGR00908 2A0305 ethanolamine 98.2 0.00015 3.2E-09 69.0 18.0 216 32-271 5-221 (442)
35 PRK11021 putative transporter; 98.2 0.0003 6.5E-09 66.3 19.5 204 37-271 2-207 (410)
36 PRK10746 putative transport pr 98.2 0.00022 4.8E-09 68.4 18.7 111 31-147 7-118 (461)
37 COG1113 AnsP Gamma-aminobutyra 98.1 0.00026 5.7E-09 66.7 16.4 219 29-269 8-231 (462)
38 TIGR00930 2a30 K-Cl cotranspor 98.0 0.00035 7.5E-09 72.6 18.2 112 34-149 76-189 (953)
39 TIGR00906 2A0303 cationic amin 98.0 0.00094 2E-08 65.7 19.5 230 31-271 25-261 (557)
40 TIGR00911 2A0308 L-type amino 97.9 0.00036 7.8E-09 67.6 15.9 223 28-271 36-265 (501)
41 PRK11357 frlA putative fructos 97.8 0.0011 2.4E-08 63.1 16.5 216 31-271 5-225 (445)
42 PF13520 AA_permease_2: Amino 97.8 0.00049 1.1E-08 64.9 13.3 214 37-271 2-218 (426)
43 PRK10197 gamma-aminobutyrate t 97.6 0.004 8.6E-08 59.5 17.0 203 46-271 4-211 (446)
44 COG0531 PotE Amino acid transp 97.4 0.011 2.4E-07 56.1 16.9 219 31-270 9-230 (466)
45 PF02554 CstA: Carbon starvati 97.2 0.012 2.6E-07 54.3 14.1 123 16-146 33-157 (376)
46 KOG1287 Amino acid transporter 97.2 0.0038 8.2E-08 59.7 10.7 220 29-270 7-233 (479)
47 COG3949 Uncharacterized membra 97.1 0.0097 2.1E-07 54.0 12.1 103 40-149 7-112 (349)
48 COG0833 LysP Amino acid transp 96.7 0.049 1.1E-06 52.7 14.2 214 32-267 42-260 (541)
49 TIGR00800 ncs1 NCS1 nucleoside 96.7 0.23 4.9E-06 47.5 18.7 50 102-151 75-124 (442)
50 TIGR03428 ureacarb_perm permea 96.6 0.44 9.6E-06 45.8 20.4 107 32-144 11-119 (475)
51 PRK11375 allantoin permease; P 96.6 0.2 4.4E-06 48.5 17.8 49 102-150 88-137 (484)
52 PF00324 AA_permease: Amino ac 96.6 0.027 5.9E-07 54.2 11.6 97 46-147 7-104 (478)
53 TIGR00835 agcS amino acid carr 96.3 0.14 2.9E-06 48.8 14.1 88 35-124 46-138 (425)
54 PRK15238 inner membrane transp 96.3 0.72 1.6E-05 44.7 19.5 86 33-125 6-92 (496)
55 PRK15015 carbon starvation pro 96.2 0.085 1.8E-06 52.2 12.3 111 27-144 74-186 (701)
56 TIGR00907 2A0304 amino acid pe 96.0 0.79 1.7E-05 44.1 18.2 111 32-148 10-127 (482)
57 COG1966 CstA Carbon starvation 95.9 0.16 3.5E-06 49.2 12.8 122 15-144 32-155 (575)
58 TIGR00910 2A0307_GadC glutamat 95.8 0.52 1.1E-05 45.9 16.0 88 34-130 4-93 (507)
59 TIGR00796 livcs branched-chain 95.6 0.21 4.5E-06 46.9 11.8 81 102-196 254-334 (378)
60 TIGR02358 thia_cytX probable h 95.0 2.5 5.5E-05 39.7 17.3 140 38-201 7-146 (386)
61 KOG1286 Amino acid transporter 95.0 0.098 2.1E-06 51.4 8.0 229 31-270 27-261 (554)
62 TIGR02119 panF sodium/pantothe 94.5 2.4 5.3E-05 40.7 16.3 149 29-198 35-189 (471)
63 PRK12488 acetate permease; Pro 94.3 2.6 5.7E-05 41.5 16.4 151 27-199 60-213 (549)
64 PF00474 SSF: Sodium:solute sy 94.1 0.76 1.6E-05 43.1 11.6 145 34-199 6-153 (406)
65 PRK09442 panF sodium/panthothe 93.9 2.7 5.8E-05 40.6 15.2 150 29-198 36-190 (483)
66 PF05525 Branch_AA_trans: Bran 93.7 0.86 1.9E-05 43.4 11.2 79 102-194 260-338 (427)
67 TIGR00813 sss transporter, SSS 93.5 2.3 5E-05 40.0 13.9 145 34-199 3-149 (407)
68 PRK11017 codB cytosine permeas 92.9 4.8 0.0001 38.0 15.0 83 102-198 70-154 (404)
69 COG1457 CodB Purine-cytosine p 92.7 4.2 9.1E-05 38.9 14.0 86 104-203 82-169 (442)
70 PRK09395 actP acetate permease 92.6 6.8 0.00015 38.6 16.0 145 31-196 66-212 (551)
71 TIGR03648 Na_symport_lg probab 91.8 13 0.00027 36.7 16.9 149 27-196 25-175 (552)
72 COG0591 PutP Na+/proline sympo 91.5 12 0.00026 36.4 16.2 116 27-148 31-151 (493)
73 TIGR02121 Na_Pro_sym sodium/pr 90.0 13 0.00029 35.9 15.0 153 29-197 31-187 (487)
74 TIGR02711 symport_actP cation/ 90.0 21 0.00045 35.2 17.8 145 31-197 64-211 (549)
75 PF02133 Transp_cyt_pur: Perme 89.5 5.4 0.00012 37.8 11.7 49 102-150 70-118 (440)
76 COG1114 BrnQ Branched-chain am 89.3 5.6 0.00012 37.6 11.1 81 103-197 263-343 (431)
77 PRK15433 branched-chain amino 85.7 11 0.00024 36.1 11.0 76 104-194 266-341 (439)
78 TIGR03813 put_Glu_GABA_T putat 85.4 36 0.00077 32.6 16.6 70 53-129 18-88 (474)
79 KOG1289 Amino acid transporter 82.6 14 0.00031 36.1 10.4 53 37-91 54-107 (550)
80 PRK15419 proline:sodium sympor 74.6 87 0.0019 30.4 15.9 153 29-198 35-192 (502)
81 PF01566 Nramp: Natural resist 71.7 67 0.0015 29.6 11.5 79 103-195 42-122 (358)
82 TIGR01197 nramp NRAMP (natural 71.4 93 0.002 29.3 15.2 100 40-148 8-109 (390)
83 PF01235 Na_Ala_symp: Sodium:a 66.8 1.2E+02 0.0026 28.9 14.6 60 33-93 16-79 (416)
84 TIGR00909 2A0306 amino acid tr 59.5 1.4E+02 0.0031 27.9 11.4 47 103-149 264-310 (429)
85 PRK00701 manganese transport p 59.2 1.7E+02 0.0037 28.0 15.1 46 103-148 94-139 (439)
86 PRK10484 putative transporter; 58.6 1.6E+02 0.0036 28.6 11.9 95 27-128 31-126 (523)
87 KOG2083 Na+/K+ symporter [Inor 51.7 86 0.0019 31.3 8.4 110 37-150 31-142 (643)
88 COG0733 Na+-dependent transpor 47.7 1.1E+02 0.0023 29.5 8.2 200 37-255 10-228 (439)
89 COG1115 AlsT Na+/alanine sympo 41.3 3.4E+02 0.0073 26.2 14.1 62 32-94 59-124 (452)
90 PF12046 DUF3529: Protein of u 39.7 50 0.0011 27.5 4.1 75 5-90 53-129 (173)
91 KOG2082 K+/Cl- cotransporter K 39.0 1.9E+02 0.0041 30.0 8.7 167 32-202 111-285 (1075)
92 PRK09928 choline transport pro 38.5 4.5E+02 0.0098 26.9 12.2 34 105-138 181-214 (679)
93 PF01235 Na_Ala_symp: Sodium:a 38.1 2.2E+02 0.0047 27.2 8.8 89 106-207 296-384 (416)
94 PHA02764 hypothetical protein; 36.5 2.8E+02 0.006 25.8 8.7 26 33-59 11-37 (399)
95 COG4147 DhlC Predicted symport 35.7 4.3E+02 0.0094 25.9 12.4 83 102-198 103-186 (529)
96 COG1914 MntH Mn2+ and Fe2+ tra 31.4 4.7E+02 0.01 25.0 14.2 102 36-148 17-122 (416)
97 KOG1289 Amino acid transporter 30.9 5.4E+02 0.012 25.5 16.7 47 103-149 325-371 (550)
98 KOG1287 Amino acid transporter 26.9 3.3E+02 0.0072 26.5 8.0 44 105-149 275-318 (479)
99 COG1953 FUI1 Cytosine/uracil/t 26.3 6.3E+02 0.014 24.8 20.0 97 102-201 102-205 (497)
100 PRK10644 arginine:agmatin anti 25.2 5.8E+02 0.013 24.0 10.5 46 103-148 260-305 (445)
101 COG1292 BetT Choline-glycine b 22.7 7.6E+02 0.016 24.5 11.1 33 104-136 176-208 (537)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-40 Score=307.56 Aligned_cols=226 Identities=40% Similarity=0.608 Sum_probs=196.7
Q ss_pred ccccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582 30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (280)
Q Consensus 30 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~ 109 (280)
.+++|++||+++.+|.++.++|.|+|+||||++++||+.|++++++.++++.||+.||.+|.+.++.+.|+|+++|.|++
T Consensus 32 ~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 32 ITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG 111 (437)
T ss_pred cccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999988888899999999999
Q ss_pred HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhh
Q 023582 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (280)
Q Consensus 110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l 189 (280)
+++||+++++++.+++++.++|+|+.|++..||+++.+++..|.+.. .++.+.|+++++++.+|++++||++++
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l 185 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSL 185 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcchh
Confidence 99999999999999999999999999999999999999998765431 344578999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCc
Q 023582 190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPIS 269 (280)
Q Consensus 190 ~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~ 269 (280)
+++|..|+++++.|..+.++.++.++......++..+. . ...... |+++|+++|||++|+++||||++||+
T Consensus 186 ~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~--~-----~~~~~~--f~a~g~iaFaf~gH~v~peIq~tMk~ 256 (437)
T KOG1303|consen 186 SYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLD--L-----GTIPTV--FTALGIIAFAYGGHAVLPEIQHTMKS 256 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCccc--C-----CCCcch--hhhhhheeeeecCCeeeeehHhhcCC
Confidence 99999999999999888888887776543221111110 0 111111 89999999999999999999999987
Q ss_pred c
Q 023582 270 K 270 (280)
Q Consensus 270 ~ 270 (280)
+
T Consensus 257 p 257 (437)
T KOG1303|consen 257 P 257 (437)
T ss_pred c
Confidence 4
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=7.6e-34 Score=271.16 Aligned_cols=224 Identities=17% Similarity=0.214 Sum_probs=169.2
Q ss_pred ccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHc
Q 023582 34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASL 113 (280)
Q Consensus 34 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~ 113 (280)
++++..++++|++|+++|+|+|+||+||+++||++|++++++++.++.||.++|.+|.++. + ..+|+|++++++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~----~--~~sY~~la~~~~ 131 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT----N--IRTYEGVARVLL 131 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC----C--CCCHHHHHHHHh
Confidence 3567899999999999999999999999999999999999999999999999999987642 2 469999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhHHH
Q 023582 114 GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLS 193 (280)
Q Consensus 114 G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~~S 193 (280)
||++++++++++.++++|+|++|+++.||+++.+++....++. .... ..++..+.+++.++++|++++|++++|+++|
T Consensus 132 G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~-~~~~-~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S 209 (467)
T PTZ00206 132 GPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDF-LKQK-SGNRLLTSLMWLCFMLPLVIPRHIDSLRYVS 209 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccch-hhhc-cCcEEeeeehhhhHhhhcccccchHHHHHHH
Confidence 9999999999999999999999999999999988853211000 0000 0122334456778899999999999999999
Q ss_pred HHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCch----hHHHHHHHHHHHHHHHhcCchhhHhhhhCCCc
Q 023582 194 ILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSAS----EKVWRAFQAIGDVAFAYAFSTVLVEIQASPIS 269 (280)
Q Consensus 194 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~ 269 (280)
.+|+++.+...+++++..+.++.. + ..+++++++....+ ....+.+.++|+++|||.||.++||++++||+
T Consensus 210 ~i~~~~i~~~vi~ivi~~~~~~~~--~---~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~ 284 (467)
T PTZ00206 210 TIAVSFMVYLVIVIVVHSCMNGLP--E---NIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTN 284 (467)
T ss_pred HHHHHHHHHHHhhhhhhhhcccCc--c---cccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcc
Confidence 999977654333333333333211 0 01111111110011 11135789999999999999999999999987
Q ss_pred c
Q 023582 270 K 270 (280)
Q Consensus 270 ~ 270 (280)
|
T Consensus 285 ~ 285 (467)
T PTZ00206 285 R 285 (467)
T ss_pred c
Confidence 4
No 3
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.97 E-value=1.9e-32 Score=256.55 Aligned_cols=223 Identities=28% Similarity=0.398 Sum_probs=179.3
Q ss_pred ccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHc
Q 023582 34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASL 113 (280)
Q Consensus 34 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~ 113 (280)
|++|++++++|++|+++|+|+|++|++|+++||++|++++++++.++.||.++|.++.+..+ ++++..+|+|++++++
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--cccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999987543 1334689999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhHHH
Q 023582 114 GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLS 193 (280)
Q Consensus 114 G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~~S 193 (280)
||++++++++++.++++|.|++|+++.+|++.++.+....+ ...++..+.++..++++|++++|++++++++|
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s 151 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVLPLSFLKNLKSLRYLS 151 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccc-------ccccccccccccccccccccccchhhHHHHHh
Confidence 99999999999999999999999999999999988643221 13456677888889999999999999999999
Q ss_pred HHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCccce
Q 023582 194 ILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKIF 272 (280)
Q Consensus 194 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~~~ 272 (280)
.+|+++.+.+..+.+......... ++.+. .. +......++.+.+.++|+++|||.||.++||++++||+|..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~-~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~ 223 (409)
T PF01490_consen 152 ILGLFSIFYFIVIVVIYIISYGPG-EPSGV-----PS-PPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSK 223 (409)
T ss_pred hhhhhccceeeeeecceeeeeecc-ccccc-----cc-ccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCcc
Confidence 999987664322222222222211 11111 00 00123455678999999999999999999999999987543
No 4
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.97 E-value=9.2e-31 Score=242.91 Aligned_cols=219 Identities=17% Similarity=0.183 Sum_probs=178.3
Q ss_pred cccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHH
Q 023582 33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS 112 (280)
Q Consensus 33 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~ 112 (280)
++..|..++..|+.|.++|+|+|++|+||+++||+.|.+...+++.++.||.+.+++|.++...+.++...+|++.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999997554433333457888887755
Q ss_pred ----------cCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhc
Q 023582 113 ----------LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ 182 (280)
Q Consensus 113 ----------~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~ 182 (280)
+||++|.+++.++.++++|.|++|+++.+++++++.+. +. .-.++.+.|+++..+..+|+++
T Consensus 124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~---~~-----~~~~s~~~~i~~~~~~~lll~~ 195 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE---HS-----PGVLSVRLYILIQLPPLLLLNL 195 (449)
T ss_pred HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc---cC-----CCCccHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999861 11 1145667889999999999999
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHh
Q 023582 183 IPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVE 262 (280)
Q Consensus 183 ~r~l~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~ 262 (280)
+||+|.|+.+|++|.++.++-..++..+.+.+.. .. ++ .+.-.++.+.+..+|+.+|||+|++++.|
T Consensus 196 Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~-~~------~~------~~~~~~~~~~~lf~GtaifafEGig~VLP 262 (449)
T KOG1304|consen 196 IRNLKILSPFSLFANVFILVGLAIIMYYLVQDLP-PT------SD------LPAVTGWSGLPLFFGTAIFAFEGIGMVLP 262 (449)
T ss_pred HHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccC-Cc------cc------cccccchhhhHHHHHHHHHHhccceEEEe
Confidence 9999999999999999877655554444433322 11 11 11233466788999999999999999999
Q ss_pred hhhCCCccce
Q 023582 263 IQASPISKIF 272 (280)
Q Consensus 263 I~~~M~~~~~ 272 (280)
++++||++..
T Consensus 263 lEn~Mk~P~~ 272 (449)
T KOG1304|consen 263 LENSMKKPQK 272 (449)
T ss_pred hhhcccChhh
Confidence 9999988653
No 5
>PLN03074 auxin influx permease; Provisional
Probab=99.97 E-value=9.5e-30 Score=242.71 Aligned_cols=218 Identities=17% Similarity=0.169 Sum_probs=167.8
Q ss_pred cccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCC---CCCCCC---Cc-ccH
Q 023582 33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSP---DPVTGK---RN-YTY 105 (280)
Q Consensus 33 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~---~~~~g~---~~-~sy 105 (280)
..+++..++.+|++|..+|.|+|+||+||+++||++|++++++.++++.||+++|.+|+.+. +++++. ++ .+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 34668999999999999999999999999999999999999999999999999999874221 111121 11 378
Q ss_pred HHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCC
Q 023582 106 MDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPN 185 (280)
Q Consensus 106 ~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~ 185 (280)
.|+++..+||+|+.+..+...+++++.|+.|++..++++..+.. .++.+.|+++++++++|++++|+
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~-------------~~~~~~~~~i~~~v~~~~~~i~s 189 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND-------------NLDKRTWTYIFGACCATTVFIPS 189 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC-------------CcCCCeEEeehHHHHHHHHHccC
Confidence 99999999999999999999999999999999988877654421 23446788889999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhh
Q 023582 186 FHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQA 265 (280)
Q Consensus 186 l~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~ 265 (280)
+++++++|++|+.+++.+...++..++.+... ++++ .+...++...++++++++|||++|+++|||++
T Consensus 190 l~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~--------~~~~----~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~ 257 (473)
T PLN03074 190 FHNYRIWSFLGLLMTTYTAWYMTIAALSHGQV--------EGVK----HSGPTKLVLYFTGATNILYTFGGHAVTVEIMH 257 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------CCCC----CCCchhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 99999999999886554322222222222110 1111 01234566778899999999999999999999
Q ss_pred CCCc-cceeee
Q 023582 266 SPIS-KIFIYS 275 (280)
Q Consensus 266 ~M~~-~~~~~~ 275 (280)
+||+ |.|+..
T Consensus 258 ~M~~P~~F~~~ 268 (473)
T PLN03074 258 AMWKPQKFKYI 268 (473)
T ss_pred hccChhcccch
Confidence 9977 445543
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.92 E-value=3.1e-25 Score=207.19 Aligned_cols=220 Identities=18% Similarity=0.262 Sum_probs=170.2
Q ss_pred ccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHc
Q 023582 34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASL 113 (280)
Q Consensus 34 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~ 113 (280)
++.|.+.+++|+.|+++|+|++++|+||++.|.+.|++++.++|+++.++.+++.+|.++. ++ .+|+++++..+
T Consensus 4 ~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~----~~--~ty~~l~~~~~ 77 (411)
T KOG1305|consen 4 GKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS----GE--RTYSSLGDLIF 77 (411)
T ss_pred CccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc----CC--CCHHHHHHHHc
Confidence 4458899999999999999999999999999999999999999999999999999998753 33 39999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCch-hHHHHHHHHHHHhcCCCchhhhHH
Q 023582 114 GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNP-LMIIFACIQIVLSQIPNFHKLSWL 192 (280)
Q Consensus 114 G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~i~~~i~~pl~~~r~l~~l~~~ 192 (280)
|+.++....+....+..| |++|+++.||.++.+........+. ... ..+++. |+++..++.+||++.|+++++++.
T Consensus 78 g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~-~~~-~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~t 154 (411)
T KOG1305|consen 78 GKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEG-GSH-YLDRNFLILLVLLFIILPLSLLKNLDSLKYT 154 (411)
T ss_pred CCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhccccccc-ccc-cccceeEeehHHHHHHHHHHHHHhhhhHHHH
Confidence 999976666666666666 7999999999999776543211111 111 123333 677888899999999999999999
Q ss_pred HHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCccc
Q 023582 193 SILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKI 271 (280)
Q Consensus 193 S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~~ 271 (280)
|.+++++...+..++++..+..... ..+.. + ..+++..+++.+.++|+++|||.||..+.+|++|||||-
T Consensus 155 S~~s~~~~~~fv~~vv~~~~~~~~~----~~~~~---~--~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s 224 (411)
T KOG1305|consen 155 SALSLASVVYFVVLVVYKYFQGPCA----LGRLS---Y--LVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRS 224 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc----cCCcc---c--ccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCch
Confidence 9999988776555555444332210 11111 1 112233346889999999999999999999999999863
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.90 E-value=2e-25 Score=198.16 Aligned_cols=217 Identities=16% Similarity=0.195 Sum_probs=179.4
Q ss_pred ccccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCC---CCcccHH
Q 023582 30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTG---KRNYTYM 106 (280)
Q Consensus 30 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g---~~~~sy~ 106 (280)
++...+.+.++|..|+.|++-|.-+++||+|...+||+ ++..++.++.+|+||+.+|++|..+.++ +| |.+.||.
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~-dGevVrvRdsYv 188 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGE-DGEVVRVRDSYV 188 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCC-CCcEEEeehhHH
Confidence 35566779999999999999999999999999999987 9999999999999999999999876543 34 2357999
Q ss_pred HHHHHHcCCc-chhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCC
Q 023582 107 DVVRASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPN 185 (280)
Q Consensus 107 ~i~~~~~G~~-g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~ 185 (280)
++++.+++|. |.+.+.+.+++.+..+|+.|++..||.+..-++.. .+++..|+++....++|.+++|+
T Consensus 189 aIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-----------svd~~sWm~i~~a~LLpc~FLk~ 257 (524)
T KOG4303|consen 189 AIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-----------SVDKASWMMITSASLLPCSFLKD 257 (524)
T ss_pred HHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-----------CccccchhhhhhHHHhhhHHHHH
Confidence 9999998874 55889999999999999999999999998766521 35667899999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhh
Q 023582 186 FHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQA 265 (280)
Q Consensus 186 l~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~ 265 (280)
+|..+.+|++..+.-++.-.+++.+|..+..+ ...+.++ ...+.-+.+.++|+++|+|..|..+|.++.
T Consensus 258 Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~d-----W~wskv~------Fsidi~~fPisvG~iVFsYTSqIFLP~LEG 326 (524)
T KOG4303|consen 258 LKIVSRLSFFCTISHLVINLIMVLYCLSFVSD-----WSWSKVT------FSIDINTFPISVGMIVFSYTSQIFLPNLEG 326 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccceeEE------EEEEcccCceEEEEEEEeeeceeecccccc
Confidence 99999999999998888777888787765421 1111111 122223556789999999999999999999
Q ss_pred CCCcc
Q 023582 266 SPISK 270 (280)
Q Consensus 266 ~M~~~ 270 (280)
.|++|
T Consensus 327 NM~~p 331 (524)
T KOG4303|consen 327 NMKNP 331 (524)
T ss_pred ccCCh
Confidence 99875
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.90 E-value=8.5e-23 Score=192.25 Aligned_cols=218 Identities=18% Similarity=0.144 Sum_probs=172.3
Q ss_pred ccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHc
Q 023582 34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASL 113 (280)
Q Consensus 34 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~ 113 (280)
.+.+..++++++.++++|+|+|++|++++..|++++++++++.+.+++++.+++.|+..+.+. ++.+|.+++++.+
T Consensus 7 ~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~----~~~~~~~~~~~~~ 82 (415)
T COG0814 7 KTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN----GKASITSLVEDYL 82 (415)
T ss_pred CCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CcccHHHHHHHHh
Confidence 345788999999999999999999999999999999999999999999999999999876431 1259999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhHHH
Q 023582 114 GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLS 193 (280)
Q Consensus 114 G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~~S 193 (280)
||+|+++.++++.+.+++.+.+|.+..||.+++.++..... + ..+|....+++.+++.++++.++...++..|
T Consensus 83 G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~-----~--~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts 155 (415)
T COG0814 83 GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGL-----N--PLPRKLGSLIFALVLAFLSWLGTLAVLKITS 155 (415)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhccc-----C--CcchHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 99999999999999999999999999999999998742210 0 1455667778888888899999999999999
Q ss_pred HHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCccce
Q 023582 194 ILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKIF 272 (280)
Q Consensus 194 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~~~ 272 (280)
.+........++... ..+.+.. + ..+.. + |.. .+..+.....++|+++|||+||+++|+++++||++..
T Consensus 156 ~l~~~~v~~~~~l~~-~~~~~~~--~---~~l~~--~-~~~-~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~ 224 (415)
T COG0814 156 LLVFGKVIYLVLLVV-YLIPHWN--P---ANLFA--L-PSA-SQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSK 224 (415)
T ss_pred HHHHHHHHHHHHHHH-HHhcccC--H---HHHhc--c-ccc-chhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchh
Confidence 999876555333322 2222210 0 00010 0 000 1245557789999999999999999999999987643
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.70 E-value=6.9e-16 Score=144.32 Aligned_cols=213 Identities=11% Similarity=0.053 Sum_probs=151.4
Q ss_pred ccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582 32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (280)
Q Consensus 32 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~ 111 (280)
++++++.+++.+.+..+.+|+|+|++|.+.++.|+++++++++++++...||+.++.|...+.+ +..++..++++
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~-----~g~~~~tma~~ 81 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR-----IGSSFDTITKD 81 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCHHHHHHH
Confidence 3667899999999999999999999999999999999999999999999999999999754322 15799999999
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhc--CCCchhh
Q 023582 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ--IPNFHKL 189 (280)
Q Consensus 112 ~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~r~l~~l 189 (280)
.+||+|+.+.+++..+..|+.+++|+--.|+.+++.++.... ..++..-.+++.++.-.+.+ .|..+++
T Consensus 82 ~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~---------~i~~~~~~llF~~~~~~iv~~gt~~vd~~ 152 (414)
T PRK10483 82 LLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSL---------NVPARAAGFGFALLVAFVVWLSTKAVSRM 152 (414)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCC---------CCcHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999999999999999999999999988853110 11112222333333333333 2445555
Q ss_pred hHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCc
Q 023582 190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPIS 269 (280)
Q Consensus 190 ~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~ 269 (280)
..+-+.+.+..+.. ++. ....+... ..+.+.+ +.+...+...+.++|++++||+.|.++|++++.+++
T Consensus 153 n~~l~~~~i~~f~~--~~~-~l~~~i~~-----~~L~~~~----~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~ 220 (414)
T PRK10483 153 TAIVLGAKVITFFL--TFG-SLLGHVQP-----ATLFNVA----ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGK 220 (414)
T ss_pred HHHHHHHHHHHHHH--HHH-HHHhhcCH-----HHHhccc----cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCc
Confidence 55555555443331 111 11112110 0011100 112223345679999999999999999999999876
Q ss_pred c
Q 023582 270 K 270 (280)
Q Consensus 270 ~ 270 (280)
+
T Consensus 221 d 221 (414)
T PRK10483 221 D 221 (414)
T ss_pred C
Confidence 3
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.69 E-value=1.1e-15 Score=142.80 Aligned_cols=213 Identities=15% Similarity=0.092 Sum_probs=147.3
Q ss_pred ccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHc
Q 023582 34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASL 113 (280)
Q Consensus 34 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~ 113 (280)
++.+.+++.+.+..+.+|+|+|+||.+.++.|+.+++++++++.+...||+.++.|...+.+ +..++..++++++
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~-----~g~~l~tma~~~L 81 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP-----VGSSFNTITKDLI 81 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCHHHHHHHHc
Confidence 34478889999999999999999999999999999999999999999999999999754332 1579999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcC--CCchhhhH
Q 023582 114 GGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI--PNFHKLSW 191 (280)
Q Consensus 114 G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--r~l~~l~~ 191 (280)
||+|+.+.+++..+..|+.+++|+--.|+.+++.++.... . ..+++.-.+++.++.-++.+. |..+.+..
T Consensus 82 G~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~-~-------~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr 153 (415)
T PRK09664 82 GNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLG-Y-------HANPRIVGICTAIFVASVLWISSLAASRITS 153 (415)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc-C-------CCcHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 9999999999999999999999999999999998753110 0 111222223344333333332 44555555
Q ss_pred HHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhH-HHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582 192 LSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEK-VWRAFQAIGDVAFAYAFSTVLVEIQASPISK 270 (280)
Q Consensus 192 ~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~ 270 (280)
+-+.+.+..+.. .+.....+... ..+.+.++ +..... +-..+.++|++++||+.|+++|++.+.++++
T Consensus 154 ~l~~~~ii~f~~---~~~~l~~~i~~-----~~L~~~~~---~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d 222 (415)
T PRK09664 154 LFLGLKIISFVI---VFGSFFFQVDY-----SILRDATS---TTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKR 222 (415)
T ss_pred HHHHHHHHHHHH---HHHHHhhcccH-----HHHhcCcc---ccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCcc
Confidence 555444433321 11111112110 00111000 011111 2246689999999999999999999888653
No 11
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.64 E-value=1.1e-14 Score=136.55 Aligned_cols=209 Identities=13% Similarity=0.156 Sum_probs=146.0
Q ss_pred cchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcC
Q 023582 35 TGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLG 114 (280)
Q Consensus 35 ~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G 114 (280)
+.+.+++.+.+..+.+|+|+|+||.+.+..|++++++++++++...++|..++.|+..+.+ +..+|.+++++.+|
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~-----~~~~~~~~a~~~lG 76 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTP-----EGSSLTSMAEKYLG 76 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHhC
Confidence 3468899999999999999999999999999999999999999999999999999754322 15799999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcC--CCchhhhHH
Q 023582 115 GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI--PNFHKLSWL 192 (280)
Q Consensus 115 ~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--r~l~~l~~~ 192 (280)
|+|+++..++..+..++.+++|+.-.|+.+.+.++..... ..++..-.+++.++...+... |-..+...+
T Consensus 77 ~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~--------~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~ 148 (394)
T PF03222_consen 77 KKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT--------DLSPWLSSLLFTIIFGGIVYFGTKAVDRINRV 148 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999999999999988643211 112222222233222222211 223344333
Q ss_pred HHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCc
Q 023582 193 SILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPIS 269 (280)
Q Consensus 193 S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~ 269 (280)
-....+..+.. .+...+.+... ++... ..+...++...+.++|+.++||+.|.++|++.+.+++
T Consensus 149 lv~~~i~~~~~---l~~~~~p~~~~--------~~L~~--~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~ 212 (394)
T PF03222_consen 149 LVFGMIISFII---LVVYLIPHWNP--------SNLLD--APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGG 212 (394)
T ss_pred HHHHHHHHHHH---HHHHHhhhcCH--------HHhhc--cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCc
Confidence 33333333221 11112222110 11110 0112345557789999999999999999999998875
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.63 E-value=2e-14 Score=134.69 Aligned_cols=205 Identities=14% Similarity=0.150 Sum_probs=142.0
Q ss_pred hHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCc
Q 023582 37 TWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR 116 (280)
Q Consensus 37 s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~ 116 (280)
+.+++.+.+..+.+|+|+|+||.+.+..|++++++++++++.+..|+++++.|+..+.+ +..++.+++++.+||+
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~-----~~~~~~~~a~~~LG~~ 78 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP-----ADTGLGTLAKRYLGRY 78 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----CCCCHHHHHHHHhChH
Confidence 67899999999999999999999999999999999999999999999999999654322 1468999999999999
Q ss_pred chhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcC--CCchhhhHHHH
Q 023582 117 SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI--PNFHKLSWLSI 194 (280)
Q Consensus 117 g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--r~l~~l~~~S~ 194 (280)
|+++..++..+..|..+.+|..-.|+.+.+.+..+..+ +++.....+++.++.....+. |-..++..+-.
T Consensus 79 g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~--------~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~ 150 (403)
T PRK15132 79 GQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI--------SMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLF 150 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC--------CCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999999999998887642211 112223333333332222222 22334444433
Q ss_pred HHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582 195 LAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISK 270 (280)
Q Consensus 195 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~ 270 (280)
.+.+..+. +.....+.+.. .++....+ +. .+ -.+.++|++++||+.|.++|++.+.++++
T Consensus 151 ~~~ii~~~---~~~~~l~p~~~--------~~~L~~~~-~~--~~--~~~~~iPvl~~SFgfh~iIpsl~~y~~~~ 210 (403)
T PRK15132 151 SAKIIFLV---VMLALMMPHIH--------KVNLLTLP-LQ--QG--LALSAIPVIFTSFGFHGSVPSIVSYMGGN 210 (403)
T ss_pred HHHHHHHH---HHHHHHHHhcC--------HHHHhcCC-cc--cc--HHHHHHHHHHHHhhCCcccHHHHHHhCcC
Confidence 33332222 11111112211 01110000 00 01 27789999999999999999999998763
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.57 E-value=3.5e-14 Score=132.38 Aligned_cols=204 Identities=13% Similarity=0.070 Sum_probs=143.3
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCcchhhh
Q 023582 42 SAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLC 121 (280)
Q Consensus 42 ~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~g~~~v 121 (280)
+..++++++|+|+|++|.++++.|+.++.+.+++.+.++.++..++.|+..+.++ ..++.+.+++++||++++++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~-----~~~~~~~~~~~~G~~~g~~~ 77 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG-----GASFNTIAKDLLGKTGNIIA 77 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHhCHHHHHHH
Confidence 3456789999999999999999999999999999999999999999998654321 45999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHH
Q 023582 122 GLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSF 201 (280)
Q Consensus 122 ~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~~S~~~~~~~~ 201 (280)
++...+.++..+++|.+..++.+..+++..... ..++..+.+++.+++.++.. +..+..++++.+.+...+
T Consensus 78 ~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~l 148 (381)
T TIGR00837 78 GLSLLFVLYILTYAYISGGGSILSRLIGEYFGF--------PWSARAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGKI 148 (381)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------CccHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHH
Confidence 999999999999999999999998887632110 11222333334444444443 456777777776665544
Q ss_pred HHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCc
Q 023582 202 AYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPIS 269 (280)
Q Consensus 202 ~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~ 269 (280)
....+.+...+.+... ++ +.|.......+.+.+.+++..+++|++|.+++++.+++++
T Consensus 149 ~~l~~~ii~~~~~~~~--------~~--~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~ 206 (381)
T TIGR00837 149 IAFALVFSGLLPHVKG--------DL--LLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDG 206 (381)
T ss_pred HHHHHHHHHHHhhccH--------HH--HhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhcc
Confidence 4322222222222110 00 0010001123346778999999999999999999888863
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.38 E-value=1.7e-11 Score=115.11 Aligned_cols=210 Identities=12% Similarity=0.108 Sum_probs=136.4
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCcchhhh
Q 023582 42 SAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLC 121 (280)
Q Consensus 42 ~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~g~~~v 121 (280)
...+..+.+|+|+|+||......|.++.+++++++..+++|+...+.|...+.+ ++..++.+++++.+||+|+.+.
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~----~~~~~i~~v~~~~lG~~g~~i~ 100 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS----NPSGNITETVEEHFGKTGGVVI 100 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----CCCCCHHHHHHHHcChhHHHHH
Confidence 488999999999999999999999999999999999999999999999543221 1256999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcC--CCchhhhHHHHHHHHH
Q 023582 122 GLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI--PNFHKLSWLSILAAVM 199 (280)
Q Consensus 122 ~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--r~l~~l~~~S~~~~~~ 199 (280)
.++.++..+..+.+|...+.+.+.+.+..+. +.. ..++....+++.+++...... |-+.++..+-....+.
T Consensus 101 ~ilYff~ly~ll~aY~~~itn~l~sfl~~ql-~~~------~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~ 173 (443)
T PRK13629 101 TFLYFFAICPLLWIYGVTITNTFMTFWENQL-GFA------PLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIA 173 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcC------CccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888877776543221 100 122323333333333332222 2244455444444443
Q ss_pred HHHHHHhhhheeeeecccCCCCCCCccccccC--CCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582 200 SFAYSSIGIGLSIAKVIGDGPHATTLTGTTVG--VDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISK 270 (280)
Q Consensus 200 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~ 270 (280)
.+....+ ..+.+... ..+...+++ ++.......-....++|+++|||+.|+.+|++...+|++
T Consensus 174 ~l~~l~~---~LiP~w~~-----~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~ 238 (443)
T PRK13629 174 SLVLISL---SLIPYWNS-----AVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREE 238 (443)
T ss_pred HHHHHHH---HHHHHcCH-----HHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 3332111 12222210 001100000 000011111346789999999999999999998885443
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.28 E-value=1.5e-10 Score=108.69 Aligned_cols=201 Identities=13% Similarity=0.032 Sum_probs=131.5
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCcchhhh
Q 023582 42 SAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLC 121 (280)
Q Consensus 42 ~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~g~~~v 121 (280)
.+.+..+.+|+|+|++|....+.||+..++..++...+.+++..++.|..-..+ ++..++.+++++.|||+++.+.
T Consensus 9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~----~p~~~i~~~~~~~fGk~~G~ii 84 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK----NPCEDITEVVEEHFGKNWGILI 84 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHcCHHHHHHH
Confidence 788899999999999999999999998888888888888999999998632211 1146999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHH
Q 023582 122 GLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSF 201 (280)
Q Consensus 122 ~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~~S~~~~~~~~ 201 (280)
+++..+..+..+.+|....++.+..........+ ...+.+..+..++.+-.......+.+.+++-+-+...+
T Consensus 85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~--------~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~i 156 (397)
T TIGR00814 85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLGTA--------PPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLV 156 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888887775321110 01111111111112122222355656665544443222
Q ss_pred HHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhh
Q 023582 202 AYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264 (280)
Q Consensus 202 ~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~ 264 (280)
....+.....+.+... ++..-.| +....+.+...+++..+|||.+|+++|++.
T Consensus 157 i~l~~l~~~lip~~~~--------~~L~~~p--~~~~~~~~i~~alpv~~~SF~~~~iIssl~ 209 (397)
T TIGR00814 157 LILVLLSLYLIPHWNG--------ANLTTFP--SFNGFLKTLWLTIPVMVFSFNHSPIISSFA 209 (397)
T ss_pred HHHHHHHHHHHHHcCH--------HHHhcCC--cccchHHHHHHHHHHHHHHHHccccchHHH
Confidence 2111222222222110 1110001 111234577899999999999999999996
No 16
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.95 E-value=6.9e-09 Score=87.23 Aligned_cols=220 Identities=16% Similarity=0.277 Sum_probs=136.9
Q ss_pred hHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHccc-------------CC--C----C-
Q 023582 37 TWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYR-------------SP--D----P- 96 (280)
Q Consensus 37 s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~-------------~~--~----~- 96 (280)
|-......+.|.++|+|.|+||.||+..||.+++.++.+.+++++.+...+++.+. .. + +
T Consensus 13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st 92 (319)
T KOG3832|consen 13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST 92 (319)
T ss_pred hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence 34445677888999999999999999999999999999999999999988877421 00 0 0
Q ss_pred --------CCC-----CC------------------cccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHH
Q 023582 97 --------VTG-----KR------------------NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMV 145 (280)
Q Consensus 97 --------~~g-----~~------------------~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~ 145 (280)
+.| +| +....+++...|.|.+-.+..+++++++||-...|--..--++.
T Consensus 93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m 172 (319)
T KOG3832|consen 93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAM 172 (319)
T ss_pred cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhh
Confidence 000 00 12366888888999999999999999999999999776655544
Q ss_pred HHhh-----hcccccCC--C--ccccc---cCC----chhHHHHH-HHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhhh
Q 023582 146 AVKR-----SNCFHRHG--H--HVKCY---TSN----NPLMIIFA-CIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGI 208 (280)
Q Consensus 146 ~l~~-----~~~~~~~~--~--~~~~~---~~~----~~~~~i~~-~i~~pl~~~r~l~~l~~~S~~~~~~~~~~~~i~i 208 (280)
++.- ..|....+ + ...|. ++| +.++.|+. ++.+|+.+. ++++.+++.++..++--.- . ..
T Consensus 173 ~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~-~-~~ 249 (319)
T KOG3832|consen 173 NITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAA-F-IL 249 (319)
T ss_pred hhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHh-c-cc
Confidence 4331 11211000 0 01121 111 23444544 355687766 6777777777766543321 1 12
Q ss_pred heeee--ecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582 209 GLSIA--KVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISK 270 (280)
Q Consensus 209 ~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~ 270 (280)
+.+.. +..+ ++. +.|+..-.+-+.-.-++...|+|.+|...|+....|+-|
T Consensus 250 g~~l~tmqaee----daa-------~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k 302 (319)
T KOG3832|consen 250 GISLATMQAEE----DAA-------AAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTK 302 (319)
T ss_pred hhhhhhhhhcc----ccc-------ccCCccccccccccccchhhHHHHhhccCCCCCCCCeec
Confidence 22222 2111 111 112222222122245788899999999999998888554
No 17
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.60 E-value=1.7e-06 Score=80.09 Aligned_cols=204 Identities=12% Similarity=0.030 Sum_probs=120.5
Q ss_pred cchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcC
Q 023582 35 TGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLG 114 (280)
Q Consensus 35 ~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G 114 (280)
+-|.+|..+.+..+++|+|++.+|...++.+---+-+..++.++.......++.+..++.+ ..+..+..++++|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p------~~~~~~~~~~~~G 75 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFP------EKNFSEILSKYLG 75 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHhh
Confidence 3577899999999999999999999877644333445566677777777777888665432 2379999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHH-HHHHHHHHHhcCCCchhhhHHH
Q 023582 115 GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI-IFACIQIVLSQIPNFHKLSWLS 193 (280)
Q Consensus 115 ~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~r~l~~l~~~S 193 (280)
|+...++.+...++.+..+..-.-..++.++.... ++ ...+.+ +..++..-....+.++..++++
T Consensus 76 k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~~------tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~ 141 (359)
T TIGR00912 76 KILGRLLSILFILYFFLIAAYLIRIFADFIKTYLL--------PR------TPIIVIIILIIIVSIYIVRKGIEVLLRTA 141 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CC------CCHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 99999888887777776655555556666554321 00 112222 2222222223345777778777
Q ss_pred HHHHHHHHHH-HHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHH-HHHHHHhcCchhhHhhhhCCCcc
Q 023582 194 ILAAVMSFAY-SSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAI-GDVAFAYAFSTVLVEIQASPISK 270 (280)
Q Consensus 194 ~~~~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~-g~~~faf~~~~vi~~I~~~M~~~ 270 (280)
.+-....+.. ..+.......+. + ..++. |-. ..++.+.+.+. +...++|.+..++.-...++|+|
T Consensus 142 ~i~~~~~i~~~~~il~~~~~~~~----~-~~~l~-----P~~--~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~ 208 (359)
T TIGR00912 142 EILLIIFLILFILVLILLAPKLG----N-IKNLL-----PVL--ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK 208 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc----c-HHHcc-----Ccc--ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh
Confidence 7665443332 112221121111 0 00111 111 11233444333 47888898877777666667664
No 18
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.46 E-value=1.5e-05 Score=76.50 Aligned_cols=220 Identities=13% Similarity=0.066 Sum_probs=118.4
Q ss_pred cccccchHHHHHHHHHHhHhhhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582 31 RAKRTGTWVTASAHIITAVIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (280)
Q Consensus 31 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP-~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~ 109 (280)
+.+|+-+.++.....+..++|+|++-.| .+.+++|. ..+...++.+++......-+.|.....+ +..++.+.+
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~-----~~~~~~~ya 90 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNL-----EYKSFSDFA 90 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCcHHHHH
Confidence 4567778999999999999999999986 58888886 3444455555655555555666532211 123567889
Q ss_pred HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhh
Q 023582 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (280)
Q Consensus 110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l 189 (280)
++.+||....++.+..++.......+.....+..++.+++. . ....+.++...+...+... ..+..
T Consensus 91 ~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-------~------~~~~~~~~~~~~~~~iN~~-g~~~~ 156 (469)
T PRK11049 91 SDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-------L------SDWVASLAVVLLLLSLNLA-TVKMF 156 (469)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------C------cHHHHHHHHHHHHHHHHHH-hHHHH
Confidence 99999999999988888766444444444455454433220 0 0111222222222223222 33444
Q ss_pred hHHHHHHHHHHHHHH--Hhhhhee-eeecccCCCCC-CCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhh
Q 023582 190 SWLSILAAVMSFAYS--SIGIGLS-IAKVIGDGPHA-TTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQA 265 (280)
Q Consensus 190 ~~~S~~~~~~~~~~~--~i~i~~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~ 265 (280)
+++..+....-+... +++++.. ......++..+ ....+. ++.....+..+.+.+.++...+|+|.|-......-+
T Consensus 157 ~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~ 235 (469)
T PRK11049 157 GEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHL-WNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAA 235 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccc-CCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 444433222211111 1111111 00111111100 000000 000000112344677899999999999999999999
Q ss_pred CCCccc
Q 023582 266 SPISKI 271 (280)
Q Consensus 266 ~M~~~~ 271 (280)
|+|++.
T Consensus 236 E~knP~ 241 (469)
T PRK11049 236 ETKDPE 241 (469)
T ss_pred HhcCHh
Confidence 998743
No 19
>PRK10655 potE putrescine transporter; Provisional
Probab=98.41 E-value=3.3e-05 Score=73.47 Aligned_cols=213 Identities=8% Similarity=-0.067 Sum_probs=115.3
Q ss_pred cccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHH
Q 023582 33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS 112 (280)
Q Consensus 33 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~ 112 (280)
+|+-+.++.+...+.+++|+|++.+|..+++.|- .+.+..++.+++.......+.|.....+. .| ..-.-.++.
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~-~G----G~y~y~~~~ 78 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRK-SG----GMGGYAEYA 78 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CC----chHHHHHHH
Confidence 5667899999999999999999999998988885 35556666666666666666775433221 22 334445688
Q ss_pred cCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHH--HHHHHHhcCCCchhhh
Q 023582 113 LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFA--CIQIVLSQIPNFHKLS 190 (280)
Q Consensus 113 ~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~--~i~~pl~~~r~l~~l~ 190 (280)
+||+...++.+..++.....+.++.+...+.+..+++. + . . . ...+++... .+..-+. .+..+..+
T Consensus 79 ~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~---~---~-~--~--~~~~~~~~~~l~~~~~ln-~~g~~~~~ 146 (438)
T PRK10655 79 FGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA---T---L-S--P--VQICLATIGVLWLCTVAN-FGGARITG 146 (438)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---c---c-c--h--HHHHHHHHHHHHHHHHHH-HhCHHHHH
Confidence 99988888888776665554444444444454444321 0 0 0 0 011222111 1111122 23444444
Q ss_pred HHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582 191 WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISK 270 (280)
Q Consensus 191 ~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~ 270 (280)
++..+..+..+.-..+++...+.... ++ .. .++ +++ .....+.+...++....|+|.|-.....+-+|+|++
T Consensus 147 ~i~~i~~~~~l~~l~~~~i~~~~~~~--~~-~~-~~~--~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P 218 (438)
T PRK10655 147 QISSVTVWGVIIPVVGLSIIGWFWFS--PS-LY-VAA--WNP--HHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENP 218 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--cc-cc-cCC--cCc--cCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCc
Confidence 44443332222111111111111111 10 00 010 111 111223456678889999999999999988888874
Q ss_pred c
Q 023582 271 I 271 (280)
Q Consensus 271 ~ 271 (280)
.
T Consensus 219 ~ 219 (438)
T PRK10655 219 E 219 (438)
T ss_pred c
Confidence 3
No 20
>PRK10249 phenylalanine transporter; Provisional
Probab=98.41 E-value=2.1e-05 Score=75.40 Aligned_cols=216 Identities=13% Similarity=0.029 Sum_probs=118.6
Q ss_pred cccccchHHHHHHHHHHhHhhhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582 31 RAKRTGTWVTASAHIITAVIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (280)
Q Consensus 31 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP-~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~ 109 (280)
+.+|+-+.++.....+..++|+|++..| .+.+..|- ...+..++.+++....+.-+.|.....+. .| +..+.+
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~-~G----g~~~y~ 91 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPV-SG----SFAHFA 91 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHHH
Confidence 4557778899999999999999999987 55556675 35566666777777777777886544321 22 566678
Q ss_pred HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhh
Q 023582 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (280)
Q Consensus 110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l 189 (280)
++.+|++...++.+..++.......+.....+..++.+++ ......+..+...+...+.+ +..+..
T Consensus 92 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~lN~-~gv~~~ 157 (458)
T PRK10249 92 YKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFP-------------DVPTWIWAAAFFIIINAVNL-VNVRLY 157 (458)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------cCcHHHHHHHHHHHHHHHHH-hcchhh
Confidence 8999999999888887776655455544445544443321 01111122222222222222 234444
Q ss_pred hHHHHHHHH---HHHHHHHhhhheee-eecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhh
Q 023582 190 SWLSILAAV---MSFAYSSIGIGLSI-AKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQA 265 (280)
Q Consensus 190 ~~~S~~~~~---~~~~~~~i~i~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~ 265 (280)
+++..+..+ ..+. .+++++... ..+...+ +...++. +......+..+.+...++....|+|.|-.....+-+
T Consensus 158 ~~i~~~~~~ikv~~i~-~~i~~~i~~~~~~~~~~--~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~ 233 (458)
T PRK10249 158 GETEFWFALIKVLAII-GMIGFGLWLLFSGHGGE--KASIDNL-WRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAA 233 (458)
T ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCC--CCChhhc-cCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 433322211 1111 111111111 0111000 0011110 100000112344667899999999999999999999
Q ss_pred CCCcc
Q 023582 266 SPISK 270 (280)
Q Consensus 266 ~M~~~ 270 (280)
|+|++
T Consensus 234 E~~~P 238 (458)
T PRK10249 234 EARDP 238 (458)
T ss_pred HhcCH
Confidence 99874
No 21
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.38 E-value=3.1e-05 Score=74.00 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=81.8
Q ss_pred ccccchHHHHHHHHHHhHhhhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHH
Q 023582 32 AKRTGTWVTASAHIITAVIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (280)
Q Consensus 32 ~~~~~s~~~a~~~l~~~~iG~GiL~lP-~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~ 110 (280)
.+|+-+.++..+..+.+++|+|++.+| .+.+..|-. +.+..++.+++....+..+.|.....++ .| +..+.++
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~-~G----g~~~~~~ 83 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPD-TG----SFSTYAD 83 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC----CHHHHHH
Confidence 467778999999999999999999999 777788853 5666666677777667777776543322 22 5566788
Q ss_pred HHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHH
Q 023582 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAV 147 (280)
Q Consensus 111 ~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l 147 (280)
+.+||+...++.+..++.....+.+.....+..++.+
T Consensus 84 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~ 120 (452)
T TIGR01773 84 DAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYW 120 (452)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998888888777666666666666666544
No 22
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.35 E-value=5e-05 Score=73.04 Aligned_cols=218 Identities=8% Similarity=-0.030 Sum_probs=118.2
Q ss_pred cccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582 33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWV-AGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (280)
Q Consensus 33 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i-~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~ 111 (280)
+|+-+.+++.+..+++++|+|++.+|....+.|=. ...+..++.+++.........|.....+++.| ..-+-.++
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG----G~y~y~~~ 81 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG----GIYAYARE 81 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----ChhhhHHh
Confidence 56678999999999999999999999888765522 12334455555566666666775443321122 23334588
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHH-HHHHHHhcCCCchhhh
Q 023582 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFA-CIQIVLSQIPNFHKLS 190 (280)
Q Consensus 112 ~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~r~l~~l~ 190 (280)
.+||+...++.+..++.......++.....+.+..+++... .+. .. ..++.... .+.+-..-.+..+..+
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-----~~~--~~--~~~~~~~~~~~~~~~ln~~Gi~~~~ 152 (473)
T TIGR00905 82 GFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-----SGN--PV--PSILGASVLLWVFTFLVLRGVRQAA 152 (473)
T ss_pred HcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----CCC--cH--HHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999888888776665566666666666665554110 000 00 11111111 1112222334566666
Q ss_pred HHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCC-CCc-hhHHHHHHHHHHHHHHHhcCchhhHhhhhCCC
Q 023582 191 WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVD-VSA-SEKVWRAFQAIGDVAFAYAFSTVLVEIQASPI 268 (280)
Q Consensus 191 ~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~-~~~-~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~ 268 (280)
++..+..+..+...++.+...+..... +....+ +.++ .+. ...+.....++...+|+|.|-.....+-+|+|
T Consensus 153 ~i~~~~~~~~l~~l~~~ii~~~~~~~~-~~~~~~-----~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k 226 (473)
T TIGR00905 153 FINTITTIAKLIPLFLFIIIGWFWFKL-DLFTAD-----FWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAK 226 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc-hhcccc-----cCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 665555443222111111111111100 000000 0000 001 12334566889999999999988887777777
Q ss_pred c
Q 023582 269 S 269 (280)
Q Consensus 269 ~ 269 (280)
+
T Consensus 227 ~ 227 (473)
T TIGR00905 227 N 227 (473)
T ss_pred c
Confidence 6
No 23
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.35 E-value=3.4e-05 Score=73.38 Aligned_cols=214 Identities=8% Similarity=-0.053 Sum_probs=115.0
Q ss_pred ccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582 32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (280)
Q Consensus 32 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~ 111 (280)
++|+-+.++.+...+.+++|+|++.+|...++.|-. .+...++.++...-......|.....+. .| . .|.-. ++
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~-~G-G--~y~y~-~~ 76 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQ-QG-G--PIAYA-GE 76 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC-C--hhHHH-HH
Confidence 466778999999999999999999999999988853 4444455555555555666665433322 22 1 23333 45
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHH-HHHHHHHHhcCCCchhhh
Q 023582 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMII-FACIQIVLSQIPNFHKLS 190 (280)
Q Consensus 112 ~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i-~~~i~~pl~~~r~l~~l~ 190 (280)
+|+++...+.+..+........++.+...+.+..+++.. . + .. ..+++. ..+..+-+.-.+..+..+
T Consensus 77 -~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-----~--~--~~--~~~~~~~~i~~~~~~ln~~gvk~~~ 144 (435)
T PRK10435 77 -ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-----N--D--PI--PAGIACIAIVWVFTFVNMLGGTWVS 144 (435)
T ss_pred -HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----C--C--hH--HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 699888888877665544444555455555655544311 0 0 01 011111 111111112223444555
Q ss_pred HHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582 191 WLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISK 270 (280)
Q Consensus 191 ~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~ 270 (280)
.+..+..+..+......+...+.+. + ++ . .. .+|.+ +......+...++....|+|.|-......-+|+|++
T Consensus 145 ~i~~i~~~~~li~~~~~~i~g~~~~-~-~~-~--~~-~~~~~--~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP 216 (435)
T PRK10435 145 RLTTIGLVLVLIPVVGTAIVGWHWF-D-AA-T--YA-ANWNT--SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNP 216 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-C-HH-h--hc-ccccC--CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc
Confidence 5544443322211111111111111 0 00 0 00 01111 112345678889999999999999999999999875
Q ss_pred c
Q 023582 271 I 271 (280)
Q Consensus 271 ~ 271 (280)
.
T Consensus 217 ~ 217 (435)
T PRK10435 217 K 217 (435)
T ss_pred c
Confidence 3
No 24
>TIGR00909 2A0306 amino acid transporter.
Probab=98.31 E-value=3.9e-05 Score=72.63 Aligned_cols=217 Identities=9% Similarity=-0.013 Sum_probs=124.0
Q ss_pred cccchHHHHHHHHHHhHhhhhhhHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582 33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQ-LGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (280)
Q Consensus 33 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~-~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~ 111 (280)
+|+-+.++..+..++.++|+|++.+|..... .|. ...+..++.+++.........|..+..+. .| ..-+-.++
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~-~G----g~y~~~~~ 75 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPV-AG----SPYTYAYE 75 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CC----cceeeHHH
Confidence 4667899999999999999999999965543 443 23444555666666667777776544332 22 22344456
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCcccccc---CCch--hHHHHHHHHHHHhcCCCc
Q 023582 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYT---SNNP--LMIIFACIQIVLSQIPNF 186 (280)
Q Consensus 112 ~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~--~~~i~~~i~~pl~~~r~l 186 (280)
.+||+...++.+...+.....+.++....++.+..+++....+ ....+.. +... +..+...+.+-+.-.+..
T Consensus 76 ~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~ 152 (429)
T TIGR00909 76 AMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLD---LPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGA 152 (429)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---CchhhhcCCcccccccHHHHHHHHHHHHHHHhCc
Confidence 7999998988888888777777777777788877766521100 0010100 0011 111112222222233456
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhC
Q 023582 187 HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQAS 266 (280)
Q Consensus 187 ~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~ 266 (280)
+..++++.+.....+....+.+.....+... . ++.+.. +....+.+.++...+|+|.|......+-+|
T Consensus 153 ~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~-----~-----~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~~~E 220 (429)
T TIGR00909 153 KESGKVNDILVVLKVAALLLFAALGAIHFAS-----N-----NYTPFM--PMGFGGVGAATALVFFAFIGFEAISTAAEE 220 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhCcH-----H-----hcCCCC--CCcHHHHHHHHHHHHHHHhhHHHHHhhHHh
Confidence 6666666655544333222212222221110 0 111111 123446678899999999999999888888
Q ss_pred CCcc
Q 023582 267 PISK 270 (280)
Q Consensus 267 M~~~ 270 (280)
+|++
T Consensus 221 ~~~p 224 (429)
T TIGR00909 221 VKNP 224 (429)
T ss_pred ccCc
Confidence 8774
No 25
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.31 E-value=5.9e-05 Score=71.94 Aligned_cols=215 Identities=10% Similarity=-0.015 Sum_probs=113.8
Q ss_pred cccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHH
Q 023582 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (280)
Q Consensus 31 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~ 110 (280)
+++|+-+.++.+...++.++|+|++.+|...++.|.. .+...++.++...-....+.|.....+. .| ..+.| ++
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~-aG-G~y~~---~~ 78 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPS-PG-GSYAY---AR 78 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC-ChhHH---HH
Confidence 3566778999999999999999999999888887742 3333444444555555556675433322 23 12344 78
Q ss_pred HHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhc--CCCchh
Q 023582 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ--IPNFHK 188 (280)
Q Consensus 111 ~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~r~l~~ 188 (280)
+.+||+...++.+..++.......+......+.+..+++.. . +.....++..+++..++. .+..|.
T Consensus 79 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~------~~~~~~~~~~~~~~~~~~ln~~gvk~ 146 (445)
T PRK10644 79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL------K------DPLVLTITCVVVLWIFVLLNIVGPKM 146 (445)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------C------CcHHHHHHHHHHHHHHHHHHHhchHH
Confidence 88999988888877776654444444444444444333210 0 011111111111112221 223455
Q ss_pred hhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCC
Q 023582 189 LSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPI 268 (280)
Q Consensus 189 l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~ 268 (280)
.+++..+..+..+....+.+...+... +.+... ++ |+ ......+.....++...+|+|.|-.....+-+|+|
T Consensus 147 ~~~i~~i~~~~~~i~l~~~~~~~~~~~-~~~~~~---~~--~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k 218 (445)
T PRK10644 147 ITRVQAVATVLALIPIVGIAVFGWFWF-RGETYM---AA--WN--VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVK 218 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-Cchhcc---CC--cc--ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 555544443322221111111111111 100000 00 10 01112334556788899999999999999999998
Q ss_pred ccc
Q 023582 269 SKI 271 (280)
Q Consensus 269 ~~~ 271 (280)
++.
T Consensus 219 ~P~ 221 (445)
T PRK10644 219 NPK 221 (445)
T ss_pred Ccc
Confidence 753
No 26
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.31 E-value=5e-05 Score=72.75 Aligned_cols=216 Identities=11% Similarity=0.019 Sum_probs=118.7
Q ss_pred cccccchHHHHHHHHHHhHhhhhhhHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582 31 RAKRTGTWVTASAHIITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (280)
Q Consensus 31 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~-a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~ 109 (280)
+.+|+-+.++..+..++.++|+|++..|. +.+++|- ..++..++.+++......-+.|.....+. .| ++.+-+
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~-aG----g~y~~~ 82 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPV-AG----SFSHFA 82 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC----CHHHHH
Confidence 45677789999999999999999999885 4555563 34444555556666566666775433222 22 455556
Q ss_pred HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhh
Q 023582 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (280)
Q Consensus 110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l 189 (280)
++.+||...+++.+..++.....+.+.....++.++.+++. .....+.++...+...+... ..+..
T Consensus 83 ~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~i~~~~~~~lN~~-gv~~~ 148 (456)
T PRK10238 83 YKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------------IPTWVSAAVFFVVINAINLT-NVKVF 148 (456)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------CcHHHHHHHHHHHHHHHHHH-hHHHH
Confidence 77899999999999888887777777766677766544320 11112222222222222222 23333
Q ss_pred hHHHHHHHHHHHHH--HHhhhheee-eecccCCCCCCCccccccC-CCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhh
Q 023582 190 SWLSILAAVMSFAY--SSIGIGLSI-AKVIGDGPHATTLTGTTVG-VDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQA 265 (280)
Q Consensus 190 ~~~S~~~~~~~~~~--~~i~i~~~~-~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~ 265 (280)
+.+..+..+.-+.. .+++++..+ .....++ +...++. +. ..+ .+..+.+...+++...|+|.|-.....+-+
T Consensus 149 ~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~--~~~~~~~-~~~~~~-~~~g~~~~~~~~~~~~~af~G~e~~~~~ae 224 (456)
T PRK10238 149 GEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGP--QATVSNL-WDQGGF-LPHGFTGLVMMMAIIMFSFGGLELVGITAA 224 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--Ccccccc-CCCCCC-ccccHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 33333322221110 011111110 1111111 0001100 00 001 112234566788889999999999999999
Q ss_pred CCCcc
Q 023582 266 SPISK 270 (280)
Q Consensus 266 ~M~~~ 270 (280)
|+|++
T Consensus 225 E~knP 229 (456)
T PRK10238 225 EADNP 229 (456)
T ss_pred hhcCh
Confidence 99874
No 27
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.28 E-value=0.00014 Score=69.71 Aligned_cols=220 Identities=13% Similarity=0.040 Sum_probs=117.1
Q ss_pred ccccccchHHHHHHHHHHhHhhhhhhHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHH
Q 023582 30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (280)
Q Consensus 30 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i 108 (280)
.+.+|+-+.++.....+..++|+|++.+|.. .+.+|- ...+..++.+++......-+.|.....+. .| ..-..
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~G----g~y~y 78 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPA-AS----SFSRY 78 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC----CHHHH
Confidence 3456677899999999999999999999754 666674 34566666666777777777886543321 22 34445
Q ss_pred HHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchh
Q 023582 109 VRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHK 188 (280)
Q Consensus 109 ~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~ 188 (280)
+++.+||....++.+...+.....+.+.....+..++.+++ ......+.++..++...+.+ +..+.
T Consensus 79 ~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~ln~-~gv~~ 144 (457)
T PRK10580 79 AQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFP-------------TVPHWIWVLSVVLIICAVNL-MSVKV 144 (457)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCChHHHHHHHHHHHHHHHH-ccchh
Confidence 68889999888888877766544444433444444433321 01112233222222232332 23344
Q ss_pred hhHHHHHHHHHHHHH--HHhhhh--eeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhh
Q 023582 189 LSWLSILAAVMSFAY--SSIGIG--LSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264 (280)
Q Consensus 189 l~~~S~~~~~~~~~~--~~i~i~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~ 264 (280)
.+.+..+..+..+.. .+++++ ........ +.......+ .+.+....+..+.+.+.++....|+|.|-......-
T Consensus 145 ~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~-~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a 222 (457)
T PRK10580 145 FGELEFWFSFFKVATIIIMIVAGIGIIIWGIGN-GGQPTGIHN-LWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITA 222 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCCCccc-cCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 444332221111110 011111 10011000 000000000 010000011234467788999999999999999999
Q ss_pred hCCCccc
Q 023582 265 ASPISKI 271 (280)
Q Consensus 265 ~~M~~~~ 271 (280)
+|+|++.
T Consensus 223 ~E~knP~ 229 (457)
T PRK10580 223 GEAKDPE 229 (457)
T ss_pred HHhcChh
Confidence 9998754
No 28
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.23 E-value=0.00014 Score=66.38 Aligned_cols=199 Identities=11% Similarity=0.049 Sum_probs=119.1
Q ss_pred chHHHHHHHHHHhHhhhhhhHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHH
Q 023582 36 GTWVTASAHIITAVIGSGVLSLAWAIAQL---GWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS 112 (280)
Q Consensus 36 ~s~~~a~~~l~~~~iG~GiL~lP~a~~~~---G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~ 112 (280)
-|..|....+..+.+|+|++.+|....+. ||+ +.++ .+.....-.++..+..++.+ ..+..|..++.
T Consensus 2 IS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi-~~ll---~~~~~l~~~~l~~~l~~~~p------~~~l~~~~~~~ 71 (320)
T PF03845_consen 2 ISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWI-SVLL---GGLIGLLLALLIYYLLKRFP------GKTLVEISEKL 71 (320)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHH---HHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHH
Confidence 46788999999999999999999987766 465 3333 33344444444444433322 45999999999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhH-HHHHHHHHHHhcCCCchhhhH
Q 023582 113 LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLM-IIFACIQIVLSQIPNFHKLSW 191 (280)
Q Consensus 113 ~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~~~i~~pl~~~r~l~~l~~ 191 (280)
+||+..+++.+...++.+......+-..++.++..+- + +...|. ....+++.-..-.+.++.+++
T Consensus 72 ~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l--------p------~TP~~~i~~~~ll~~~y~a~~G~e~i~R 137 (320)
T PF03845_consen 72 FGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLL--------P------ETPIWVIILLFLLVAAYAARKGIEVIAR 137 (320)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------C------cCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999988888888888777777787766542 0 011222 222223333344567888887
Q ss_pred HHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582 192 LSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISK 270 (280)
Q Consensus 192 ~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~ 270 (280)
.+-+-....+....++......+.. .+++. | --..+..+.+.+.-...+.|++-.++.-+...+|+|
T Consensus 138 ~~~~~~~~~~i~~~~i~~~~~~~~~--------~~~l~--P--~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~ 204 (320)
T PF03845_consen 138 VAEILFPIFLILLLLILLLSIPNID--------WDNLL--P--VLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK 204 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC--------HHHee--C--cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5555444333322222222222211 01110 1 113344566666777777787766665555555553
No 29
>PRK15049 L-asparagine permease; Provisional
Probab=98.20 E-value=0.00013 Score=70.68 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=68.0
Q ss_pred ccccchHHHHHHHHHHhHhhhhhhHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHH
Q 023582 32 AKRTGTWVTASAHIITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (280)
Q Consensus 32 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~-a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~ 110 (280)
.+|+-+.++.....+..++|+|++..|. +.+..|- .+++..++.+++....+.-+.|.....+. .| +.-.-++
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~-aG----g~y~y~~ 99 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPS-SG----SFVSYAR 99 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHHHH
Confidence 4566788999999999999999999875 7777775 35555666666666666777786543322 22 5666678
Q ss_pred HHcCCcchhhhHHHHHHHHHH
Q 023582 111 ASLGGRSVQLCGLAQYGNLIG 131 (280)
Q Consensus 111 ~~~G~~g~~~v~i~~~~~~~g 131 (280)
+.+|++...++.+..++....
T Consensus 100 ~~~G~~~gf~~GW~~~l~~~~ 120 (499)
T PRK15049 100 EFLGEKAAYVAGWMYFINWAM 120 (499)
T ss_pred HHhCcHhHHHHHHHHHHHHHH
Confidence 899998888888877665443
No 30
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.20 E-value=0.00016 Score=69.46 Aligned_cols=106 Identities=15% Similarity=0.060 Sum_probs=70.8
Q ss_pred cccccchHHHHHHHHHHhHhhhhhhHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (280)
Q Consensus 31 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~ 109 (280)
+.+|+-+.++.....+..++|+|++..|-. .+.+|-....+..++.+++......-+.|.....++ .| .+-.-.
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~-aG----G~y~y~ 85 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE-TG----AFHVYA 85 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC----CHHHHH
Confidence 456778899999999999999999988754 567774333445555666666666666776543322 23 445567
Q ss_pred HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhh
Q 023582 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITAS 141 (280)
Q Consensus 110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~ 141 (280)
++.+|++...++.+..++.....+.+.....+
T Consensus 86 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~ 117 (471)
T PRK11387 86 ARYLGPATGYTVAWLYWLTWTVALGSSLTAAG 117 (471)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899988888888777665544433333333
No 31
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.19 E-value=0.0002 Score=68.77 Aligned_cols=221 Identities=10% Similarity=-0.011 Sum_probs=113.8
Q ss_pred ccchHHHHHHHHHHhHhhhhhhHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHH
Q 023582 34 RTGTWVTASAHIITAVIGSGVLSLAWAIA-QLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS 112 (280)
Q Consensus 34 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~-~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~ 112 (280)
|+-+.++.....+.+++|+|++.+|.... ..|....++..++.++........+.|.....++..| ..+.| +++.
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gG-G~y~y---~~~~ 76 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDG-GVYSY---AKAG 76 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-Chhhh---HHhH
Confidence 34578899999999999999999997655 4443223334556666666666667776543322111 13344 8899
Q ss_pred cCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHH-HHHHHHhcCCCchhhhH
Q 023582 113 LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFA-CIQIVLSQIPNFHKLSW 191 (280)
Q Consensus 113 ~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~r~l~~l~~ 191 (280)
|||+...++.+..++.......++.....+.+..+++... . ..+...+.+... +..+-..-.+..+..++
T Consensus 77 fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-----~----~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~ 147 (468)
T TIGR03810 77 FGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG-----G----GNNPPSIIGASVLLWCVHFLVLRGVEGAAF 147 (468)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----C----CCcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999988888887776555555565554444444332110 0 000011111111 11122222355666666
Q ss_pred HHHHHHHHHHHH--HHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCc
Q 023582 192 LSILAAVMSFAY--SSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPIS 269 (280)
Q Consensus 192 ~S~~~~~~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~ 269 (280)
+..+..+.-+.. .+++++....+... ...+. .++.+ +.......+.+...++...+|+|.|-.....+-+|+|+
T Consensus 148 i~~i~~~~ki~~l~~~ii~~~~~~~~~~-~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~ 223 (468)
T TIGR03810 148 INTITTIAKLVPLFVFIVIGIFAFKGDT-FTNDF-WGNAN--GGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK 223 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHhh-cCccc-ccccc--ccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC
Confidence 555544322211 11111111111110 00000 00000 00001122334557889999999998888777778877
Q ss_pred cc
Q 023582 270 KI 271 (280)
Q Consensus 270 ~~ 271 (280)
|+
T Consensus 224 ~k 225 (468)
T TIGR03810 224 RS 225 (468)
T ss_pred cc
Confidence 54
No 32
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.18 E-value=0.00013 Score=70.25 Aligned_cols=215 Identities=10% Similarity=0.011 Sum_probs=118.9
Q ss_pred ccchHHHHHHHHHHhHhhhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHH
Q 023582 34 RTGTWVTASAHIITAVIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS 112 (280)
Q Consensus 34 ~~~s~~~a~~~l~~~~iG~GiL~lP-~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~ 112 (280)
|+-+.++.....+..++|+|++..| .+.+..|-...++..++.+++......-+.|.....+.. .-.|...+++.
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~----gG~~~~~~~~~ 77 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVV----SGSFATYASRF 77 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHH
Confidence 4557888888999999999999975 677777744234445556666666666677765443211 12677788999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhHH
Q 023582 113 LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWL 192 (280)
Q Consensus 113 ~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~~ 192 (280)
+||....++.+..++.....+.+.....+..+..+.+ ......|..+..++...+. .+..+..+++
T Consensus 78 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~in-~~gv~~~~~~ 143 (478)
T TIGR00913 78 VDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------------KVNPAVWIAIFYVFIVIIN-LFGVKGYGEA 143 (478)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHHHHHHHH-HhcchHHHHH
Confidence 9999999998888877666666666666665543211 0111223332222222222 2344444444
Q ss_pred HHHHHHH----HHHHHHhhhheeeeecccCCCCCCCccccccC--CCCCch---hHHHHHHHHHHHHHHHhcCchhhHhh
Q 023582 193 SILAAVM----SFAYSSIGIGLSIAKVIGDGPHATTLTGTTVG--VDVSAS---EKVWRAFQAIGDVAFAYAFSTVLVEI 263 (280)
Q Consensus 193 S~~~~~~----~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~---~~~~~~~~a~g~~~faf~~~~vi~~I 263 (280)
..+.... .+.+.++.+......... .. ..... .+. +.+++. ..+.+...++....|+|.|-.....+
T Consensus 144 ~~~~~~~ki~~l~~~ii~~i~~~~~~~~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~ 219 (478)
T TIGR00913 144 EFWFSSIKILAIIGFIILSIILNCGGGPN-HG-YIGFR--YWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALT 219 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CC-CCccc--ccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHH
Confidence 4332211 111111111111111100 00 00000 000 001111 12456778999999999999999999
Q ss_pred hhCCCcc
Q 023582 264 QASPISK 270 (280)
Q Consensus 264 ~~~M~~~ 270 (280)
-+|+|++
T Consensus 220 a~E~knP 226 (478)
T TIGR00913 220 AGEAANP 226 (478)
T ss_pred HHhhcCh
Confidence 9999874
No 33
>PRK10836 lysine transporter; Provisional
Probab=98.18 E-value=0.00018 Score=69.56 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=70.6
Q ss_pred CCccccccccchHHHHHHHHHHhHhhhhhhHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccc
Q 023582 26 LDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYT 104 (280)
Q Consensus 26 ~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~-a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~s 104 (280)
+.|+++.+|+-+.++.....+.+++|+|++..|. +.++.|-...++..++.+++....+.-+.|.....+. .| .
T Consensus 7 ~~~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~-sG----g 81 (489)
T PRK10836 7 TTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV-SG----S 81 (489)
T ss_pred cCCcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CC----C
Confidence 4566667788899999999999999999999995 7777775445666677777777777778886543332 23 4
Q ss_pred HHHHHHHHcCCcchhhhHHHHHHH
Q 023582 105 YMDVVRASLGGRSVQLCGLAQYGN 128 (280)
Q Consensus 105 y~~i~~~~~G~~g~~~v~i~~~~~ 128 (280)
.-.-+++.+|+....++.+..++.
T Consensus 82 ~y~y~~~~~g~~~gf~~Gw~~~~~ 105 (489)
T PRK10836 82 FATYGQNYVEEGFGFALGWNYWYN 105 (489)
T ss_pred HHHHHHHHcChHHHHHHHHHHHHH
Confidence 455556677877777777665553
No 34
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.18 E-value=0.00015 Score=69.05 Aligned_cols=216 Identities=12% Similarity=0.007 Sum_probs=117.1
Q ss_pred ccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582 32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (280)
Q Consensus 32 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~ 111 (280)
.+|+-+.++.....+..++|....+.+.+++..|+..-.+..++.+++....+..+.|.....+. .| ..-.-+++
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-~G----g~y~~~~~ 79 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-AG----GGYGFARR 79 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC----CHHHHHHH
Confidence 45666788888888888888555566888899998643444444555555555566775433221 22 33345588
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhH
Q 023582 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSW 191 (280)
Q Consensus 112 ~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~ 191 (280)
.+||+...++.+..++.......++....++.+..+++. .....+.++...+...+. .+..+..++
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------------~~~~~~~~~~~~~~~~ln-~~g~~~~~~ 145 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------------GPGWLAALVFYIVFIGIN-ILGVGEAAK 145 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------CchhHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 999999888888888777767777777778877665531 001111222122222222 223444444
Q ss_pred HHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCC-CCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582 192 LSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGV-DVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISK 270 (280)
Q Consensus 192 ~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~ 270 (280)
+..+..+..+....+.++....+.. + .+....++.+ +...+..+.+.+.++...+|+|.|......+-+|+|++
T Consensus 146 i~~~~~~~~~~~l~i~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P 220 (442)
T TIGR00908 146 LEFVVTAVAIIALGVFIGAMVPHFD--S---ANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNP 220 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC--H---HHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4433332222111111111111100 0 0000000000 00112234467788889999999999999999999875
Q ss_pred c
Q 023582 271 I 271 (280)
Q Consensus 271 ~ 271 (280)
.
T Consensus 221 ~ 221 (442)
T TIGR00908 221 K 221 (442)
T ss_pred c
Confidence 3
No 35
>PRK11021 putative transporter; Provisional
Probab=98.16 E-value=0.0003 Score=66.33 Aligned_cols=204 Identities=11% Similarity=-0.004 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHhHhhhhhhHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCC
Q 023582 37 TWVTASAHIITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGG 115 (280)
Q Consensus 37 s~~~a~~~l~~~~iG~GiL~lP~-a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~ 115 (280)
+++++....+++++|+|++.+|- +.+..|- ...+..++.++........+.|.....++ .| ..-.-.++.+||
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~-aG----G~y~y~~~~~G~ 75 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPH-AG----GPAHFVGMAFGP 75 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHhHHHHhCc
Confidence 47889999999999999999985 4455563 35555566666666666777776544332 23 334455678999
Q ss_pred cchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHH-HHHHHHHHHhcCCCchhhhHHHH
Q 023582 116 RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMI-IFACIQIVLSQIPNFHKLSWLSI 194 (280)
Q Consensus 116 ~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~r~l~~l~~~S~ 194 (280)
+...+..+..+........+........+..+++. + .. ..+.+ +...+.+-+.-.+..+..+++..
T Consensus 76 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------~~--~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~ 142 (410)
T PRK11021 76 RLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGW-----S------SW--QLLLAELLTLALLWLLNLRGASSSANLQT 142 (410)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC-----C------Cc--hHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 98888877766543332333333333444433320 0 00 11111 11111122222345555555554
Q ss_pred HHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCccc
Q 023582 195 LAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKI 271 (280)
Q Consensus 195 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~~ 271 (280)
+..+..+. .+.+. +..+...+ .+ .++. ...+.++.+.+.++...+|+|.|......+-+|+|++.
T Consensus 143 ~~~~~~~~--i~~~~--~~~~~~~~---~~---~~~~--~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~ 207 (410)
T PRK11021 143 VIALLIVA--LVVAI--WWAGDIKP---AD---IPFP--APGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE 207 (410)
T ss_pred HHHHHHHH--HHHHH--HHHcCCch---hc---CCCC--CCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc
Confidence 43322221 11111 11111000 01 1110 01123455677899999999999999999999998743
No 36
>PRK10746 putative transport protein YifK; Provisional
Probab=98.15 E-value=0.00022 Score=68.44 Aligned_cols=111 Identities=10% Similarity=0.004 Sum_probs=78.8
Q ss_pred cccccchHHHHHHHHHHhHhhhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582 31 RAKRTGTWVTASAHIITAVIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (280)
Q Consensus 31 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP-~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~ 109 (280)
+.+|+-+.++.....+..++|+|++..| .+.+.+|- ...+..++.+++.+....-+.|.....+ +. -++.+-+
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P-~s----Gg~~~y~ 80 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEP-VT----GSFAVYA 80 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC----CCHHHHH
Confidence 3466778899999999999999999987 66667775 3445555566666666677778644322 12 3677788
Q ss_pred HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHH
Q 023582 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAV 147 (280)
Q Consensus 110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l 147 (280)
++.+||++..++.+..++.....+.+.....+..++.+
T Consensus 81 ~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~ 118 (461)
T PRK10746 81 HRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFW 118 (461)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999998888888888776666666555555555543
No 37
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.06 E-value=0.00026 Score=66.67 Aligned_cols=219 Identities=16% Similarity=0.131 Sum_probs=138.9
Q ss_pred cccccccchHHHHHHHHHHhHhhhhhh-HHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHH
Q 023582 29 DGRAKRTGTWVTASAHIITAVIGSGVL-SLAWAIAQLGWVAGP-AVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYM 106 (280)
Q Consensus 29 ~~~~~~~~s~~~a~~~l~~~~iG~GiL-~lP~a~~~~G~i~g~-ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~ 106 (280)
+.+-+|.-+.++--+.-+...+|+|.+ +--.+.+.+| +++ +...+.+++.+.=++.|.|...+++. ..|+.
T Consensus 8 ~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AG--PSvlLaY~I~G~~~f~iMRaLGEm~~~~p~-----~gSF~ 80 (462)
T COG1113 8 EQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAG--PSVLLAYLIAGIFVFLIMRALGEMLVANPV-----SGSFS 80 (462)
T ss_pred chhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhC--cHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCcHH
Confidence 344567778888888888999999975 4678888888 444 44566777888888889987654321 35999
Q ss_pred HHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHH--HHHHhcCC
Q 023582 107 DVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACI--QIVLSQIP 184 (280)
Q Consensus 107 ~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i--~~pl~~~r 184 (280)
+.+++.+|+++..+.+...+..-..++++=+..++..++.+++. ...+.+.++..++ .+=|.-.|
T Consensus 81 ~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-------------vP~Wv~al~~~~l~~~~NL~sVk 147 (462)
T COG1113 81 DYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-------------VPQWVFALAAVVLLLAVNLISVK 147 (462)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888752 1112222222222 23334556
Q ss_pred CchhhhHH-HHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhh
Q 023582 185 NFHKLSWL-SILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 263 (280)
Q Consensus 185 ~l~~l~~~-S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I 263 (280)
-+.++-+| +++=++.++.+.++.++..+ .+..++++...+++.. +-.---+..+.+.+.++-+.+|||++..++=--
T Consensus 148 ~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~-~g~~~~~~~~g~snl~-~hGGffP~G~~g~~~~~~~v~Faf~GiElvGit 225 (462)
T COG1113 148 VFGELEFWFALIKVAAIIAFIVVGIVLLF-GGFGGGGGAAGFSNLW-DHGGFFPNGFLGFLSALQIVMFAFGGIELVGIT 225 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCccccccc-cCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 66666654 33333333322222221121 2222222222233211 000002344567889999999999998777655
Q ss_pred hhCCCc
Q 023582 264 QASPIS 269 (280)
Q Consensus 264 ~~~M~~ 269 (280)
-+|-|+
T Consensus 226 A~Et~d 231 (462)
T COG1113 226 AAEAKD 231 (462)
T ss_pred HHhhcC
Confidence 555554
No 38
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.02 E-value=0.00035 Score=72.61 Aligned_cols=112 Identities=17% Similarity=0.149 Sum_probs=84.3
Q ss_pred ccchHHHHHHHH-HHhHhhhhhhH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582 34 RTGTWVTASAHI-ITAVIGSGVLS-LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (280)
Q Consensus 34 ~~~s~~~a~~~l-~~~~iG~GiL~-lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~ 111 (280)
++-+++.+++.- +.+++|+|++- +++...++|...+.+..++.++++..|+.-+.+......++.| -.|. ...+
T Consensus 76 ~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG---G~Y~-yisr 151 (953)
T TIGR00930 76 VKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG---GAYY-LISR 151 (953)
T ss_pred cccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc---HHHH-HHHH
Confidence 344566666666 88999999987 6788889998778888888899999998888886533111122 1343 3467
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhh
Q 023582 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKR 149 (280)
Q Consensus 112 ~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~ 149 (280)
+||+.....+.++.++.+...+..|.+..++.+..+++
T Consensus 152 alGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~ 189 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLR 189 (953)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78998888888888888888888999989999888775
No 39
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=97.97 E-value=0.00094 Score=65.70 Aligned_cols=230 Identities=10% Similarity=0.017 Sum_probs=120.5
Q ss_pred cccccchHHHHHHHHHHhHhhhhhhHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHH
Q 023582 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAI--AQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (280)
Q Consensus 31 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~--~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i 108 (280)
+.+|+-+.++....-+..++|+|++.+|-.. ...|-. ..+..++.++.+...+....|.....+ +.|- .+.|.
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P-~sGg-~Y~y~-- 99 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVP-KAGS-AYLYS-- 99 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCc-ceeeH--
Confidence 4577789999999999999999999998643 346743 334445555566666666666543322 2232 34554
Q ss_pred HHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhc-c---cccCCCccccccCC-chhHHHHHHHHHHHhcC
Q 023582 109 VRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSN-C---FHRHGHHVKCYTSN-NPLMIIFACIQIVLSQI 183 (280)
Q Consensus 109 ~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~-~---~~~~~~~~~~~~~~-~~~~~i~~~i~~pl~~~ 183 (280)
++.+|+...+++.+...+.....+.+.....++.+..++... . ......... .... ..+..+..++.+-+.-.
T Consensus 100 -~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~ii~l~~~ln~ 177 (557)
T TIGR00906 100 -YVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYD-GLAEYPDFFAVCLILLLAVLLS 177 (557)
T ss_pred -HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCC-cccccchHHHHHHHHHHHHHHH
Confidence 345899888888888777665555444444555555544310 0 000000000 0101 11111111111112233
Q ss_pred CCchhhhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhh
Q 023582 184 PNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEI 263 (280)
Q Consensus 184 r~l~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I 263 (280)
+..+..+++..+..+..+....+.+...+.+... ....... ..+++...+..+.+.+.+....+|+|.|-..+..+
T Consensus 178 ~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~---~~~~~~~-~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~ 253 (557)
T TIGR00906 178 FGVKESAWVNKIFTAINILVLLFVIIAGFTKADV---ANWSITE-EKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATT 253 (557)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCc---hhccccc-cccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHh
Confidence 5666666666555544333222222222211110 0000000 00000011223456788999999999999999999
Q ss_pred hhCCCccc
Q 023582 264 QASPISKI 271 (280)
Q Consensus 264 ~~~M~~~~ 271 (280)
-+|+|++.
T Consensus 254 aeE~knP~ 261 (557)
T TIGR00906 254 GEEVKNPQ 261 (557)
T ss_pred HHhccCcc
Confidence 99998854
No 40
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.94 E-value=0.00036 Score=67.61 Aligned_cols=223 Identities=9% Similarity=0.020 Sum_probs=111.4
Q ss_pred ccccccccchHHHHHHHHHHhHhhhhhhHHHHH-HHHHhhhH-HHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccH
Q 023582 28 DDGRAKRTGTWVTASAHIITAVIGSGVLSLAWA-IAQLGWVA-GPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTY 105 (280)
Q Consensus 28 ~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-~~~~G~i~-g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy 105 (280)
|+.+.+|+-+.++...-.+.+++|+|++..|.. .+..|-.. ..+..++.+++.......+.|.....++ .| ..
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~-sG----G~ 110 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPK-SG----GE 110 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CC----ch
Confidence 334557778899999999999999999998865 55566331 1233445556666666777776544322 22 22
Q ss_pred HHHHHHHcCCcchhhhHHHHHH-HHHHHHHhhHhhhhhhHH-HHhhhcccccCCCccccccCCchhHHHHH---HHHHHH
Q 023582 106 MDVVRASLGGRSVQLCGLAQYG-NLIGVTIGYTITASISMV-AVKRSNCFHRHGHHVKCYTSNNPLMIIFA---CIQIVL 180 (280)
Q Consensus 106 ~~i~~~~~G~~g~~~v~i~~~~-~~~g~~i~y~i~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~~i~~---~i~~pl 180 (280)
-.-.++.+||+...+..+.... ...+.+..+....++.+. .+++. . ........++.. .+...+
T Consensus 111 y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-------~----~~~~~~~~~i~~~~i~~~~~l 179 (501)
T TIGR00911 111 YNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD-------C----EVPEWAIRLVAVLCVLLLTLV 179 (501)
T ss_pred hhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------C----CCchHHHHHHHHHHHHHHHHH
Confidence 2223457899877766654433 222333344444444432 22210 0 011111111111 112222
Q ss_pred hcCCCchhhhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhh
Q 023582 181 SQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVL 260 (280)
Q Consensus 181 ~~~r~l~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi 260 (280)
. .+..+..+++..+..+..+...++.+...+.....+...+.+.++ .+. ....+..+...++...+|+|.|-...
T Consensus 180 n-~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~-~f~---~~~~~~~~~~~a~~~~~~af~G~e~~ 254 (501)
T TIGR00911 180 N-CLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKN-AFE---GTETSAGGIVLAFYSGIWAYGGWNYL 254 (501)
T ss_pred H-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCccc-ccC---CCCCcHHHHHHHHHHHHHHHHhHHHH
Confidence 2 234555555555444333321111111111111110000000000 010 11123456778899999999999999
Q ss_pred HhhhhCCCccc
Q 023582 261 VEIQASPISKI 271 (280)
Q Consensus 261 ~~I~~~M~~~~ 271 (280)
..+-.|+|++.
T Consensus 255 ~~~a~E~knP~ 265 (501)
T TIGR00911 255 NFVTEEVKNPY 265 (501)
T ss_pred hhhHHHhcCch
Confidence 99999998854
No 41
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.80 E-value=0.0011 Score=63.12 Aligned_cols=216 Identities=12% Similarity=0.082 Sum_probs=109.8
Q ss_pred cccccchHHHHHHHHHHhHhhhhhhHHHHHH-HHHhhh-HHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHH
Q 023582 31 RAKRTGTWVTASAHIITAVIGSGVLSLAWAI-AQLGWV-AGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (280)
Q Consensus 31 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~-~~~G~i-~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i 108 (280)
+.+|+-+.++.....+..++|+|++..|... +..|-. ...+..++.+++..-.+....|.....++ .|- .+.|.
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~-~GG-~y~y~-- 80 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPE-NGA-DYVYL-- 80 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCC-ceeeH--
Confidence 3466778999999999999999999998764 445532 23333445555666666666675443332 231 34553
Q ss_pred HHHHcCCcchhhhHHHHHH-HHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCch
Q 023582 109 VRASLGGRSVQLCGLAQYG-NLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH 187 (280)
Q Consensus 109 ~~~~~G~~g~~~v~i~~~~-~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~ 187 (280)
++.+||....++.+..+. ........+....++.+....+ . . ... .....+...+.+-..-.+..+
T Consensus 81 -~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~------~---~--~~~-~~~~~~~~~~~~~~ln~~gv~ 147 (445)
T PRK11357 81 -KNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP------I---D--PLL-GKFIAAGLIIAFMLLHLRSVE 147 (445)
T ss_pred -HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------C---c--hHH-HHHHHHHHHHHHHHHHHhhhh
Confidence 467899887777775442 2233334444555555443221 0 0 000 011111111111111223444
Q ss_pred hhhHHHHHHHHHHHHHH--HhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhh
Q 023582 188 KLSWLSILAAVMSFAYS--SIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQA 265 (280)
Q Consensus 188 ~l~~~S~~~~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~ 265 (280)
..+++..+..+..+.-. +++++....+... . +...+. + ......+.+.+.++....|+|.|-.....+-+
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~-~--~~~~~~----~-~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~ 219 (445)
T PRK11357 148 GGAAFQTLITIAKIIPFTIVIGLGIFWFKAEN-F--AAPTTT----A-IGATGSFMALLAGISATSWSYTGMASICYMTG 219 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-c--cCCCcc----c-ccccchHHHHHHHHHHHHHHHhhHHHHHhhHH
Confidence 44454444433222211 1111111111110 0 000000 0 00112244667889999999999999999999
Q ss_pred CCCccc
Q 023582 266 SPISKI 271 (280)
Q Consensus 266 ~M~~~~ 271 (280)
|+|++.
T Consensus 220 E~k~P~ 225 (445)
T PRK11357 220 EIKNPG 225 (445)
T ss_pred HhcCcc
Confidence 998854
No 42
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.76 E-value=0.00049 Score=64.88 Aligned_cols=214 Identities=11% Similarity=0.016 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCC
Q 023582 37 TWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFIT-YYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGG 115 (280)
Q Consensus 37 s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~-~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~ 115 (280)
+++++....++.++|+|+...| .....|.. ..+..++.+.+. ........|..+..++ .-..-.-.++.+||
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~-----~GG~y~~~~~~~g~ 74 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPS-----AGGIYVWVSRAFGP 74 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTS-----STTHHHHHHHHH-H
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCC-----cCeeeehhhhcccc
Confidence 5788899999999999999999 77777754 333333333333 4555556665443322 22455666777899
Q ss_pred cchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhH-HHHHHHHHHHhcCCCchhhhHHHH
Q 023582 116 RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLM-IIFACIQIVLSQIPNFHKLSWLSI 194 (280)
Q Consensus 116 ~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~~~i~~pl~~~r~l~~l~~~S~ 194 (280)
+...++.+...+.....+.++....++.+...+.. +..+ + .. ..+. .+..++..-..-.+..|..++++.
T Consensus 75 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~--~~--~~~~i~~~~~~~~~~l~~~g~~~~~~~~~ 145 (426)
T PF13520_consen 75 FWGFIVGWLYWVAYILSLASVASSFASYLLSLFGP----DLNP-S--PW--PQFLIAIILILLFTLLNLLGIKLSGKIQN 145 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG----GGTC-S--HH--HHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred cchhcccceeEEEeeccccccccchhhhhhhcccc----cccc-c--cc--hheeeeecccccceEeeechhhhhhhhhh
Confidence 99998888888888777777777777777554421 0000 0 00 1111 111122222223345666666655
Q ss_pred HHHHHHH-HHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCccc
Q 023582 195 LAAVMSF-AYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKI 271 (280)
Q Consensus 195 ~~~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~~ 271 (280)
+..+..+ ....+++...+.....+.. . ......++..+. .+...+.+++..+|+|.|-...+.+-+|+|+|.
T Consensus 146 ~~~~~~i~~~l~~~i~~~~~~~~~~~~-~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~k~ 218 (426)
T PF13520_consen 146 ILTVIKIVIPLLVLIILGIVSFSFSGF-N--SLSFSLSTFFPS--GWPGFLAGFSVAFFAFSGFEAIASLAEENKNKT 218 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHH-H------SHSCSSCS--SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSSHH
T ss_pred hhhhhhhhhhhhhheeEEEeeeccccc-c--cccccccccCCc--cccchhhHHHHHHhhcccccccccccccccchh
Confidence 5554433 1111222122222111000 0 000000000011 111357889999999999999999999998854
No 43
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.61 E-value=0.004 Score=59.54 Aligned_cols=203 Identities=11% Similarity=0.011 Sum_probs=106.1
Q ss_pred HHhHhhhhhhHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCcchhhhHHH
Q 023582 46 ITAVIGSGVLSLAW-AIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLA 124 (280)
Q Consensus 46 ~~~~iG~GiL~lP~-a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~g~~~v~i~ 124 (280)
+.+++|+|++-.|. +.++.|. ...+..++.+++....+..+.|.....+. .| ..-+-+++.+||+...++.+.
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~-~G----g~y~y~~~~~G~~~gf~~gw~ 77 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPD-TG----SFSTYADKAIGRWAGYTIGWL 77 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHHHHHHcChHHHHHHHHH
Confidence 45789999999985 8888885 36666666777777777777786543321 22 566667799999998888888
Q ss_pred HHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHH-
Q 023582 125 QYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAY- 203 (280)
Q Consensus 125 ~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~~S~~~~~~~~~~- 203 (280)
.++.....+.......+..++...+ ......+..+..++...+.+ +..+..+.+..+..+.-+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~lN~-~gv~~~~~i~~~~~~~ki~~l 143 (446)
T PRK10197 78 YWWFWVLVIPLEANIAAMILHSWVP-------------GIPIWLFSLVITLALTGSNL-LSVKNYGEFEFWLALCKVIAI 143 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-------------cCcHHHHHHHHHHHHHHHHH-HhhHHHhhhHHHHHHHHHHHH
Confidence 8776555444433333333322211 11111122222222222222 23343333333322211110
Q ss_pred -HHhhhheeeeecccCCCCCCCcccc-c-cCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCccc
Q 023582 204 -SSIGIGLSIAKVIGDGPHATTLTGT-T-VGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISKI 271 (280)
Q Consensus 204 -~~i~i~~~~~~~~~~~~~~~~~~~v-~-~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~~ 271 (280)
.+++++.....+.. +..+ ..+. + |+.....+..+.+...++...+|+|.|-......-.|+|++.
T Consensus 144 i~~ii~~~~~~~g~~-~~~~--~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~ 211 (446)
T PRK10197 144 LAFIFLGAVAISGFY-PYAE--VSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE 211 (446)
T ss_pred HHHHHHHHHHhcCCC-CCCC--CCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh
Confidence 11111111111110 0000 0010 0 100000122344778999999999999999999999998754
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=97.38 E-value=0.011 Score=56.08 Aligned_cols=219 Identities=13% Similarity=0.071 Sum_probs=119.7
Q ss_pred cccccchHHH-HHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582 31 RAKRTGTWVT-ASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (280)
Q Consensus 31 ~~~~~~s~~~-a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~ 109 (280)
+.+|+-+.++ ........++|.|++.+|......+ ....+..++.+++....+....|..+..++ .| .+-+-.
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~G----G~y~~~ 82 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPS-AG----GAYAYA 82 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CC----Ceeeeh
Confidence 3344445555 7778888899999999998888775 111222233334444445555565443221 22 455667
Q ss_pred HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHH--HHHhcCCCch
Q 023582 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQ--IVLSQIPNFH 187 (280)
Q Consensus 110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~--~pl~~~r~l~ 187 (280)
++.+||+...++....++.......+..+..+..+..+++... . . ......+..+..++. +-+.-.+..+
T Consensus 83 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~----~~~~~~~~~~~~~~~~~~~~ln~~G~~ 154 (466)
T COG0531 83 KRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG--L--L----SIGPLLIILIALALIALLTLLNLRGIK 154 (466)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--h--h----cCCchHHHHHHHHHHHHHHHHHHhhHH
Confidence 8889988888888888888888778877777776666554210 0 0 001012222222222 2222233455
Q ss_pred hhhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCC
Q 023582 188 KLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASP 267 (280)
Q Consensus 188 ~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M 267 (280)
..+++..+..+..+....+.....+......+ .+... .. .+..........++...+|+|.|-......-+|+
T Consensus 155 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~---~~~~~-~~---~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~ 227 (466)
T COG0531 155 ASAKINSIITILKIIILLIFIILGLFAFGFSN---GNLFA-PF---NPGGGSFGGILAAILLAFFAFTGFEAIATLAEEV 227 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc---cccCC-Cc---ccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh
Confidence 55555544444333322222112122221111 11000 00 0012233367789999999999999999999999
Q ss_pred Ccc
Q 023582 268 ISK 270 (280)
Q Consensus 268 ~~~ 270 (280)
|++
T Consensus 228 knp 230 (466)
T COG0531 228 KNP 230 (466)
T ss_pred cCc
Confidence 884
No 45
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.20 E-value=0.012 Score=54.33 Aligned_cols=123 Identities=16% Similarity=0.121 Sum_probs=88.5
Q ss_pred CCCCCCCCCCCCccccccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HcccC
Q 023582 16 DPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLS--DCYRS 93 (280)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~--~~~~~ 93 (280)
|++++.+.+ +-+|+.+.-+.+.+..+-+=..++-|+|-+-=|..-.+.||+++.+-+++-+.+.---=.+.. -..|+
T Consensus 33 d~~~~TPA~-~~~DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~ 111 (376)
T PF02554_consen 33 DDSRPTPAH-TMNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRH 111 (376)
T ss_pred CCCCCCCee-ECCCCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcC
Confidence 343443333 256777766667778888888899999999999888999999888776654433221112222 12222
Q ss_pred CCCCCCCCcccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHH
Q 023582 94 PDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVA 146 (280)
Q Consensus 94 ~~~~~g~~~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~ 146 (280)
. -.|..+++++..||++|.++.+..++.+.....++....++.+..
T Consensus 112 ----~---G~Si~~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 112 ----K---GKSIGEIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred ----C---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 359999999999999999999999999998888888777776543
No 46
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0038 Score=59.66 Aligned_cols=220 Identities=11% Similarity=0.064 Sum_probs=117.3
Q ss_pred cccccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHH
Q 023582 29 DGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLG--WVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYM 106 (280)
Q Consensus 29 ~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G--~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~ 106 (280)
..+.+|+-+.+.+++.++..++|+|++..|....+.+ ...+.++-++.++++.-....-.|.-...+ ++| -+|.
T Consensus 7 ~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ip-ksG---gd~a 82 (479)
T KOG1287|consen 7 EVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIP-KSG---GDYA 82 (479)
T ss_pred cccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCC---cchh
Confidence 3455677889999999999999999999998776655 334555566677788888777777532221 223 2455
Q ss_pred HHHHHHcCCcc-hhhhHHHHHHHHHHHHHhhHhhhhhh-HHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCC
Q 023582 107 DVVRASLGGRS-VQLCGLAQYGNLIGVTIGYTITASIS-MVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIP 184 (280)
Q Consensus 107 ~i~~~~~G~~g-~~~v~i~~~~~~~g~~i~y~i~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r 184 (280)
-+.+ +||+.. -....+..++..-..+..+-+..++. +++.++ .| ...+..--++..+.+..++ ..
T Consensus 83 yi~~-afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~c----------~~p~~~~~lla~~~l~~lt-~~ 149 (479)
T KOG1287|consen 83 YISE-AFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-LC----------DVPRVASKLLAAALLVLLT-LI 149 (479)
T ss_pred hHHH-HhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-CC----------CCchHHHHHHHHHHHHHHH-HH
Confidence 5544 466644 33344444444444556777778886 666654 23 2222122222333333333 33
Q ss_pred CchhhhHHHHHHHHHHHH---HHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhH
Q 023582 185 NFHKLSWLSILAAVMSFA---YSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLV 261 (280)
Q Consensus 185 ~l~~l~~~S~~~~~~~~~---~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~ 261 (280)
|..++++.+.+=.+.+.. ...++++..++....+..++. ++-+. ...+.+..++.+++=.-.|||.|=..+-
T Consensus 150 n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~--~~~~f---~g~~~~~g~i~lafysglfa~~GWd~lN 224 (479)
T KOG1287|consen 150 NSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNF--ENSEF---EGSDTDVGNIALAFYSGLFAFSGWDYLN 224 (479)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccc--ccccc---ccCcCchHHHHHHHHHhhhcccCchhhc
Confidence 655555544433332222 122222222222211111010 00000 0123344456788888999999876666
Q ss_pred hhhhCCCcc
Q 023582 262 EIQASPISK 270 (280)
Q Consensus 262 ~I~~~M~~~ 270 (280)
-+-.|+|++
T Consensus 225 ~vteEiknP 233 (479)
T KOG1287|consen 225 YVTEEIKNP 233 (479)
T ss_pred cchHhhcCc
Confidence 566666553
No 47
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.10 E-value=0.0097 Score=54.03 Aligned_cols=103 Identities=10% Similarity=0.098 Sum_probs=74.1
Q ss_pred HHHHHHHHhHhhhhhhH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCc
Q 023582 40 TASAHIITAVIGSGVLS---LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR 116 (280)
Q Consensus 40 ~a~~~l~~~~iG~GiL~---lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~ 116 (280)
+-.|-.+.+++|+|-=+ +=-=|..-|+. |..-+++++.+-..++..+.+..++-+ ..+|+|+-+..+||+
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~------a~~y~~~~~~v~~~~ 79 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN------ATSYREILKYVSGPK 79 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc------ccchHHHHHHHhhHH
Confidence 34566666888988655 12223344544 455555666666666666666543321 569999999999999
Q ss_pred chhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhh
Q 023582 117 SVQLCGLAQYGNLIGVTIGYTITASISMVAVKR 149 (280)
Q Consensus 117 g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~ 149 (280)
..++.++.+.++++++++.-+--.|+.+.+.+.
T Consensus 80 ~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~ 112 (349)
T COG3949 80 FAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG 112 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC
Confidence 999999999999999999988888888877664
No 48
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=96.72 E-value=0.049 Score=52.71 Aligned_cols=214 Identities=13% Similarity=0.058 Sum_probs=137.6
Q ss_pred ccccchHHHHHHHHHHhHhhhhhhH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHH
Q 023582 32 AKRTGTWVTASAHIITAVIGSGVLS-LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (280)
Q Consensus 32 ~~~~~s~~~a~~~l~~~~iG~GiL~-lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~ 110 (280)
-+|+-..+.-.+.-+...+|+|.+- .-.+.+++|-...++-.++++.+.+..+.-|.|.....+ ++| +|..-+.
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-~sG----sF~~ya~ 116 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-VSG----SFSTYAT 116 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC----chhhhhh
Confidence 4566677777888888999999864 789999999998888899999999999999999765544 333 7888999
Q ss_pred HHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhc--CCCchh
Q 023582 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ--IPNFHK 188 (280)
Q Consensus 111 ~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~r~l~~ 188 (280)
+..++-....+.+..+++-.-++-.-+...+..++-+.+. .++...|+.++.++++.+.. .|-+.+
T Consensus 117 rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~------------~v~~~~w~~iF~~~i~~iN~~~Vk~fGE 184 (541)
T COG0833 117 RFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPD------------TVPPWIWIAIFLVLIFLLNLFGVKGFGE 184 (541)
T ss_pred hhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC------------CCChHHHHHHHHHHHHHHHHhcccccce
Confidence 9988887788888877777777777777777777665431 12335788888877766654 445554
Q ss_pred hhHH-HHHHHHHHHHHHHhhhheeeeecccCCCCCCCcccccc-CCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhC
Q 023582 189 LSWL-SILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTV-GVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQAS 266 (280)
Q Consensus 189 l~~~-S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~ 266 (280)
.-++ |.+=++.++.+.++.+...+... |. |+.+ +-.| ...-.-...+.+....+-+..|+|.|..++----.|
T Consensus 185 ~Efw~s~iKV~~ii~Fii~gii~~~Gg~---~~-~~~i-g~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgE 259 (541)
T COG0833 185 TEFWFSSIKVLTIIGFIILGIIIICGGG---PT-HGYI-GFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGE 259 (541)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHhcCCC---CC-CCCc-ceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecc
Confidence 4443 44444333332222221221111 11 1111 1111 000012333567778899999999998766533333
Q ss_pred C
Q 023582 267 P 267 (280)
Q Consensus 267 M 267 (280)
-
T Consensus 260 s 260 (541)
T COG0833 260 S 260 (541)
T ss_pred c
Confidence 3
No 49
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=96.69 E-value=0.23 Score=47.47 Aligned_cols=50 Identities=18% Similarity=0.049 Sum_probs=44.2
Q ss_pred cccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhc
Q 023582 102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSN 151 (280)
Q Consensus 102 ~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~ 151 (280)
..++.-+.|..||++|.++..++..+.+.|=........++.+..+++..
T Consensus 75 Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i 124 (442)
T TIGR00800 75 GLPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSI 124 (442)
T ss_pred CCCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 46888999999999999999999999999999998899999988877643
No 50
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=96.62 E-value=0.44 Score=45.85 Aligned_cols=107 Identities=11% Similarity=-0.080 Sum_probs=61.3
Q ss_pred ccccchHHHHHHHHHHh-HhhhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582 32 AKRTGTWVTASAHIITA-VIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (280)
Q Consensus 32 ~~~~~s~~~a~~~l~~~-~iG~GiL~lP-~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~ 109 (280)
-+|+-+.++....-... .+++|+.+.| .+....|- ..+...++.++.......-+.|.....+. .| ..-.-.
T Consensus 11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~-aG----G~Y~~~ 84 (475)
T TIGR03428 11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPI-SG----AIYQWS 84 (475)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC----CHHHHH
Confidence 45666677766655554 3788998876 55566664 23334444555555555666675443322 23 222334
Q ss_pred HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhH
Q 023582 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISM 144 (280)
Q Consensus 110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l 144 (280)
++.+||+..+++.+...+.....+.+........+
T Consensus 85 ~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~ 119 (475)
T TIGR03428 85 RRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVL 119 (475)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789988888888777765543433333333333
No 51
>PRK11375 allantoin permease; Provisional
Probab=96.60 E-value=0.2 Score=48.51 Aligned_cols=49 Identities=18% Similarity=0.107 Sum_probs=36.6
Q ss_pred cccHHHHHHHHcCCcchhhhHHHHH-HHHHHHHHhhHhhhhhhHHHHhhh
Q 023582 102 NYTYMDVVRASLGGRSVQLCGLAQY-GNLIGVTIGYTITASISMVAVKRS 150 (280)
Q Consensus 102 ~~sy~~i~~~~~G~~g~~~v~i~~~-~~~~g~~i~y~i~~~~~l~~l~~~ 150 (280)
..++.-++|..||++|.++..+... +..+|=-.....+.|+.+..+...
T Consensus 88 Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~ 137 (484)
T PRK11375 88 GVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGK 137 (484)
T ss_pred CCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999888888774 455555555556677777766543
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=96.56 E-value=0.027 Score=54.15 Aligned_cols=97 Identities=19% Similarity=0.178 Sum_probs=68.1
Q ss_pred HHhHhhhhhhH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCcchhhhHHH
Q 023582 46 ITAVIGSGVLS-LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLA 124 (280)
Q Consensus 46 ~~~~iG~GiL~-lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~g~~~v~i~ 124 (280)
+..++|+|++. .+.+..+.|.....+..++.+++...++.-+.+..++.++ .-++-..+++.+|+.....+.+.
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~-----~Gg~y~y~~~~lg~~~Gf~~gw~ 81 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS-----AGGFYAYASRGLGPALGFAAGWA 81 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc-----ccchhhhhhhccCCcCCceeeHH
Confidence 44678888776 5789999998666777777888888888888887654331 23566677789999888888888
Q ss_pred HHHHHHHHHHhhHhhhhhhHHHH
Q 023582 125 QYGNLIGVTIGYTITASISMVAV 147 (280)
Q Consensus 125 ~~~~~~g~~i~y~i~~~~~l~~l 147 (280)
.++.............+..++.+
T Consensus 82 y~~~~~~~~~~~~~~~~~~~~~~ 104 (478)
T PF00324_consen 82 YWLSYIAAIAAEATAAGSFLQFW 104 (478)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc
Confidence 66666666655555555554443
No 53
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.28 E-value=0.14 Score=48.75 Aligned_cols=88 Identities=19% Similarity=0.139 Sum_probs=53.7
Q ss_pred cchHHHHHHHHHHhHhhhh-hhHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHcccCCCCCCC-CCcccHHHHH
Q 023582 35 TGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFS---FITYYTSTLLSDCYRSPDPVTG-KRNYTYMDVV 109 (280)
Q Consensus 35 ~~s~~~a~~~l~~~~iG~G-iL~lP~a~~~~G~i~g~ill~~~~---~i~~yt~~lL~~~~~~~~~~~g-~~~~sy~~i~ 109 (280)
+.|.+++.+..+.+.+|+| ++++|.|.+..| -.+++-+.+.+ ..+-|.-..|..-+|+.++ .| .+--+.-++-
T Consensus 46 ~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~-~g~~~GGP~yyi~ 123 (425)
T TIGR00835 46 GVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDA-DGVFRGGPMYYIK 123 (425)
T ss_pred CccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC-CCCEecChHHHHH
Confidence 4689999999999999998 999999988777 22433333333 3444444444433332111 11 0011226888
Q ss_pred HHHcCCcchhhhHHH
Q 023582 110 RASLGGRSVQLCGLA 124 (280)
Q Consensus 110 ~~~~G~~g~~~v~i~ 124 (280)
+...|||...+..++
T Consensus 124 ~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF 138 (425)
T ss_pred HHhCccHHHHHHHHH
Confidence 888888765555555
No 54
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=96.26 E-value=0.72 Score=44.68 Aligned_cols=86 Identities=12% Similarity=0.131 Sum_probs=51.3
Q ss_pred cccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582 33 KRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYY-TSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (280)
Q Consensus 33 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~y-t~~lL~~~~~~~~~~~g~~~~sy~~i~~~ 111 (280)
+|+-++++-....+.+++|.+ .+|.+++..|.. +++..++.+.+... ......|.....+...| .--.-.++
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG----G~Y~w~~~ 78 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG----GIYSWMNK 78 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----cHHHHHHH
Confidence 456788888888889999975 569888888854 44444444444333 33445665433221112 33334566
Q ss_pred HcCCcchhhhHHHH
Q 023582 112 SLGGRSVQLCGLAQ 125 (280)
Q Consensus 112 ~~G~~g~~~v~i~~ 125 (280)
++|+++..++.+..
T Consensus 79 ~~G~~~gf~~~w~~ 92 (496)
T PRK15238 79 SVGPKFAFIGTFMW 92 (496)
T ss_pred HcCchHHHHHHHHH
Confidence 78888777655443
No 55
>PRK15015 carbon starvation protein A; Provisional
Probab=96.17 E-value=0.085 Score=52.17 Aligned_cols=111 Identities=16% Similarity=0.159 Sum_probs=79.6
Q ss_pred CccccccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHcccCCCCCCCCCccc
Q 023582 27 DDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFIT--YYTSTLLSDCYRSPDPVTGKRNYT 104 (280)
Q Consensus 27 ~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~--~yt~~lL~~~~~~~~~~~g~~~~s 104 (280)
-+|+.+.-+.+-+--+-|=..++-|+|-+-=|..-++.||+++.+-+++-.++. ..-...|.-..|+ . -.|
T Consensus 74 ~~DG~DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~----~---GrS 146 (701)
T PRK15015 74 HNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRR----D---GRS 146 (701)
T ss_pred CCCCCCcCcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecC----C---Ccc
Confidence 556666555555556677788999999999999999999999998876644322 1222222222232 1 359
Q ss_pred HHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhH
Q 023582 105 YMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISM 144 (280)
Q Consensus 105 y~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l 144 (280)
..+++++..|++++.+..+..++.+.-...++-....+.+
T Consensus 147 ig~ia~~~iG~~~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 147 LGELVKEEMGPTAGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888887777777766666665
No 56
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=95.97 E-value=0.79 Score=44.08 Aligned_cols=111 Identities=7% Similarity=-0.005 Sum_probs=61.7
Q ss_pred ccccchHHHHHHHHHHhHhh--hhhhH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHH
Q 023582 32 AKRTGTWVTASAHIITAVIG--SGVLS-LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (280)
Q Consensus 32 ~~~~~s~~~a~~~l~~~~iG--~GiL~-lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i 108 (280)
.+|+-+.++...--.. ++| .|+.. ++.+.++.|-...+...++.+++....+.-+.|.....+. .| ..-.-
T Consensus 10 l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~-~G----g~y~~ 83 (482)
T TIGR00907 10 LKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPT-SG----GQYFW 83 (482)
T ss_pred eecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCC-Cc----cHHHH
Confidence 4455566655443333 444 55544 4567777776544555666677777777777886543322 23 22233
Q ss_pred HHHHcC----CcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHh
Q 023582 109 VRASLG----GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVK 148 (280)
Q Consensus 109 ~~~~~G----~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~ 148 (280)
+++++| +...+++.+...+.....+.+.....++.+..+.
T Consensus 84 ~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~ 127 (482)
T TIGR00907 84 SAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIV 127 (482)
T ss_pred HHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554 5555666666666666655555555566655544
No 57
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.93 E-value=0.16 Score=49.17 Aligned_cols=122 Identities=16% Similarity=0.103 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCCCccccccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--ccc
Q 023582 15 NDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSD--CYR 92 (280)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~--~~~ 92 (280)
.||++..+.+ +.+|+++.-+.+.+..+-|=..++-|+|-+-=|.--++.||.++.+-+++-+++.--==.+++- ..|
T Consensus 32 ~dp~R~TPA~-~~nDG~DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR 110 (575)
T COG1966 32 LDPNRPTPAH-RKNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVR 110 (575)
T ss_pred cCCCCCCCce-eccCCcccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeec
Confidence 3444444443 4778887777778888888888999999999999999999999988876644432111122222 222
Q ss_pred CCCCCCCCCcccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhH
Q 023582 93 SPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISM 144 (280)
Q Consensus 93 ~~~~~~g~~~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l 144 (280)
+ +-.|..+++++-.|+..+.+..+...+-..-+...+.....+.+
T Consensus 111 ~-------~G~Si~~ia~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 111 H-------GGKSIGEIAGKYLGRTAKVFFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred c-------CCccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 13599999999999999998888777776666666555554443
No 58
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=95.76 E-value=0.52 Score=45.92 Aligned_cols=88 Identities=13% Similarity=0.065 Sum_probs=49.6
Q ss_pred ccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582 34 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYY--TSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (280)
Q Consensus 34 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~y--t~~lL~~~~~~~~~~~g~~~~sy~~i~~~ 111 (280)
++-+.+.-++..+..+. ++..+| .+++.| ++.+...+++.+.+. .+....|.....++..| ..-.=.++
T Consensus 4 ~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G--~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G----G~y~wv~~ 74 (507)
T TIGR00910 4 KKLSLFGFFAITASMVL--AVYEYP-TFATSG--FHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG----GIFAWVSN 74 (507)
T ss_pred cEeeHHHHHHHHHHHHH--HHHhhH-HHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC----Ceeeehhh
Confidence 34556555544444444 567888 577888 455555555555543 44555665432110112 22333578
Q ss_pred HcCCcchhhhHHHHHHHHH
Q 023582 112 SLGGRSVQLCGLAQYGNLI 130 (280)
Q Consensus 112 ~~G~~g~~~v~i~~~~~~~ 130 (280)
++|+++..++.+..+++..
T Consensus 75 a~G~~~Gf~~~~~~W~~~~ 93 (507)
T TIGR00910 75 TLGERFGFAAIFFGWFQIA 93 (507)
T ss_pred ccCccHHHHHHHHHHHHHH
Confidence 8899887776666666544
No 59
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=95.55 E-value=0.21 Score=46.89 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=58.7
Q ss_pred cccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHh
Q 023582 102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS 181 (280)
Q Consensus 102 ~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~ 181 (280)
..-..+++++.||++|+.+..+.+.+.|++++++.+...+|.++++++. .+...|.+++.++.+.++
T Consensus 254 ~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k-------------~~y~~~v~~~~l~s~~ia 320 (378)
T TIGR00796 254 AQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK-------------LSYKTWVIVFTLFSFIVA 320 (378)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CCHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999998887531 222345555555544444
Q ss_pred cCCCchhhhHHHHHH
Q 023582 182 QIPNFHKLSWLSILA 196 (280)
Q Consensus 182 ~~r~l~~l~~~S~~~ 196 (280)
.. .++++-.++..-
T Consensus 321 ~~-Gl~~Ii~~~~Pv 334 (378)
T TIGR00796 321 NL-GLTQIISISIPV 334 (378)
T ss_pred Hh-CHHHHHHHHHHH
Confidence 33 555555544443
No 60
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=94.96 E-value=2.5 Score=39.66 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCcc
Q 023582 38 WVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRS 117 (280)
Q Consensus 38 ~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~g 117 (280)
|....+|+.+-..|+.... .++.-+++..++..++...-..+....-. +. ..++.-++|..||++|
T Consensus 7 W~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~----~~---Gl~~~v~sR~~FG~~G 72 (386)
T TIGR02358 7 WFGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGA----DT---GLSAMGSLKLSLGSKG 72 (386)
T ss_pred HHHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhc----cc---CcCHHHHHHHHHccch
Confidence 6666777777777653321 33332333333322222222223333211 11 4689999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhHHHHHHH
Q 023582 118 VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAA 197 (280)
Q Consensus 118 ~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~~S~~~~ 197 (280)
.++..+...+...|=-.......|+.++.+.+..... .+...++++..++..+.++. -.+.++++..++.
T Consensus 73 s~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~---------~~~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~ 142 (386)
T TIGR02358 73 SVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE---------ESPMLWILIVGILVTLWLLS-GPLAFVWLNNWSV 142 (386)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999999988888888888999999887532110 01123445555555555543 4455666665555
Q ss_pred HHHH
Q 023582 198 VMSF 201 (280)
Q Consensus 198 ~~~~ 201 (280)
....
T Consensus 143 ~~~~ 146 (386)
T TIGR02358 143 WLLL 146 (386)
T ss_pred HHHH
Confidence 4433
No 61
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=94.95 E-value=0.098 Score=51.43 Aligned_cols=229 Identities=9% Similarity=-0.052 Sum_probs=123.8
Q ss_pred cccccchHHHHHHHHHHhHhhhhhhH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582 31 RAKRTGTWVTASAHIITAVIGSGVLS-LAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (280)
Q Consensus 31 ~~~~~~s~~~a~~~l~~~~iG~GiL~-lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~ 109 (280)
+-+|..+.+.-...=+...+|+|++- ...+.++.|-..-++-.++.+...+.+..-+.|..-..+ +. .-++-.-+
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P-~~---aGs~~~ya 102 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFP-VS---AGSFYTYA 102 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecc-cc---cccceeee
Confidence 45666677776777778999999987 478888888766666666677777777777888543222 11 01344445
Q ss_pred HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhh-hcccccCCCccccccCCchhHHH--HHHHHHHHhcCCCc
Q 023582 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKR-SNCFHRHGHHVKCYTSNNPLMII--FACIQIVLSQIPNF 186 (280)
Q Consensus 110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~i--~~~i~~pl~~~r~l 186 (280)
++..|+.+.-++.+-.+++..-.+-+-....+..++.+.. .......+ ..+...|..+ ..++++.+.-.|-+
T Consensus 103 ~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~-----~~~~~~~~~~fla~~v~in~~gv~~~ 177 (554)
T KOG1286|consen 103 YRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVD-----TVNPGGWIPDFLAFILIINLFGVLAY 177 (554)
T ss_pred eeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccccccccc-----CCCCCccHHHHHHHHHHHHHHHHhhc
Confidence 5666777667777777777666666666666666666540 00000000 1111233322 22344555555554
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccc-cCCCCCc-hhHHHHHHHHHHHHHHHhcCchhhHhhh
Q 023582 187 HKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT-VGVDVSA-SEKVWRAFQAIGDVAFAYAFSTVLVEIQ 264 (280)
Q Consensus 187 ~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~-~~~~~~~-~~~~~~~~~a~g~~~faf~~~~vi~~I~ 264 (280)
-....++.+.-+....- ++++.+.+.-+.. +.++....+.. |.+.-.. +..+.+.+.++.+..|+|.|...+-..-
T Consensus 178 ge~ef~~~~~kvl~~v~-~~Il~iVi~~G~~-~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a 255 (554)
T KOG1286|consen 178 GEVEFSLAFNKILTAVG-FIILAIVIIAGGG-PADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTA 255 (554)
T ss_pred cceeehHHHHHHHHHHH-HHHhheeeecCCC-cCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHH
Confidence 55555444443332221 1112222222211 11110111111 1100001 1224577899999999999998888777
Q ss_pred hCCCcc
Q 023582 265 ASPISK 270 (280)
Q Consensus 265 ~~M~~~ 270 (280)
.|-|++
T Consensus 256 ~E~kNP 261 (554)
T KOG1286|consen 256 EEAKNP 261 (554)
T ss_pred HhccCC
Confidence 777763
No 62
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=94.46 E-value=2.4 Score=40.69 Aligned_cols=149 Identities=10% Similarity=0.064 Sum_probs=90.9
Q ss_pred cccccccchHHHHHHHHHHhHhhhhh-hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----HHHcccCCCCCCCCCcc
Q 023582 29 DGRAKRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYTSTL----LSDCYRSPDPVTGKRNY 103 (280)
Q Consensus 29 ~~~~~~~~s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G~i~g~ill~~~~~i~~yt~~l----L~~~~~~~~~~~g~~~~ 103 (280)
.-.-.|+.+++...+.+..+.+|++. ++.|-...+.|+.+...... .....+.+..+ +.+..|+. +..
T Consensus 35 y~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~ 107 (471)
T TIGR02119 35 YFLGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMI-QVPTGYFVLGVLGKKFAIISRKY------NAI 107 (471)
T ss_pred eeEeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHc------CCc
Confidence 34456677888888999888887665 45787777777642111110 00111111122 22222321 267
Q ss_pred cHHHHHHHHcCCcc-hhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhc
Q 023582 104 TYMDVVRASLGGRS-VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ 182 (280)
Q Consensus 104 sy~~i~~~~~G~~g-~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~ 182 (280)
|..|.-++-||++. +.+..+...+.+++...+.+...+..++.++.. +...-+++..+++...+.
T Consensus 108 T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi--------------~~~~~iii~~~iv~iYt~ 173 (471)
T TIGR02119 108 TINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL--------------SYLTALFIFSSSVLIYTT 173 (471)
T ss_pred cHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHH
Confidence 99999999999654 677778887777777777777777777776531 111234455555666677
Q ss_pred CCCchhhhHHHHHHHH
Q 023582 183 IPNFHKLSWLSILAAV 198 (280)
Q Consensus 183 ~r~l~~l~~~S~~~~~ 198 (280)
.--++...+...+=.+
T Consensus 174 ~GG~~av~~td~iQ~~ 189 (471)
T TIGR02119 174 FGGFRAVALTDAIQGI 189 (471)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 7778888877665543
No 63
>PRK12488 acetate permease; Provisional
Probab=94.34 E-value=2.6 Score=41.52 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=92.1
Q ss_pred CccccccccchHHHHHHHHHHhHhhhhh-hHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHcccCCCCCCCCCccc
Q 023582 27 DDDGRAKRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYT-STLLSDCYRSPDPVTGKRNYT 104 (280)
Q Consensus 27 ~~~~~~~~~~s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G~i~g~ill~~~~~i~~yt-~~lL~~~~~~~~~~~g~~~~s 104 (280)
+|.-.-.|+-+++...+.+..+.++++. ++.|-...+.|+- +... .+...+.+.- ..++.+-.|+ .| ..|
T Consensus 60 ~df~laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~-~~g~~~g~~~~~~~~a~~lr~----~g--~~T 131 (549)
T PRK12488 60 SDFYTAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLY-ALGVLAGWPIILFLIAERLRN----LG--KYT 131 (549)
T ss_pred HHHeeeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHH-HHHHHHHHHHHHHHHHHHHHH----CC--Ccc
Confidence 3444556677888888888888776664 7799888888864 2211 1111112111 2334433332 12 579
Q ss_pred HHHHHHHHcC-CcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcC
Q 023582 105 YMDVVRASLG-GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI 183 (280)
Q Consensus 105 y~~i~~~~~G-~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 183 (280)
..|.-++-|| |+.|.+..+...+.++.-..+.+...|..++.++.. +...-+++..+++..-+..
T Consensus 132 ~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi--------------~~~~~iii~~~i~~~Yt~~ 197 (549)
T PRK12488 132 FADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI--------------SYLYAVVIVGALMVLYVTF 197 (549)
T ss_pred hHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHhc
Confidence 9998888887 568888888777777766677777777777766531 1112234455556666666
Q ss_pred CCchhhhHHHHHHHHH
Q 023582 184 PNFHKLSWLSILAAVM 199 (280)
Q Consensus 184 r~l~~l~~~S~~~~~~ 199 (280)
-=++...+...+=.+.
T Consensus 198 GGm~av~~td~iQ~~i 213 (549)
T PRK12488 198 GGMLATTWVQIIKAVL 213 (549)
T ss_pred cchhHHHHHHHHHHHH
Confidence 6777777776655443
No 64
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=94.06 E-value=0.76 Score=43.14 Aligned_cols=145 Identities=12% Similarity=0.197 Sum_probs=80.4
Q ss_pred ccchHHHHHHHHHHhHhhh-hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHH
Q 023582 34 RTGTWVTASAHIITAVIGS-GVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS 112 (280)
Q Consensus 34 ~~~s~~~a~~~l~~~~iG~-GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~ 112 (280)
|+.+++...+.+..+.+|+ ..++.|-...+.|+. +....+...........++.+-.|+. + ..|..|.-++-
T Consensus 6 r~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r~~----~--~~T~~e~~~~R 78 (406)
T PF00474_consen 6 RSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAPRLRRS----G--AVTIPEYLEKR 78 (406)
T ss_dssp S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHHHT----T----SHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHHhhccc----c--hhhhhhhhhhh
Confidence 4556778888888877766 566789888888875 33333333333333444455544421 2 67999999999
Q ss_pred cCCcc--hhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhh
Q 023582 113 LGGRS--VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS 190 (280)
Q Consensus 113 ~G~~g--~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~ 190 (280)
||++. +.+..+...+.........+...+..++.+++. +....+++..++++..+..==++...
T Consensus 79 yg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi--------------~~~~~~~i~~~i~~iYt~~GGl~av~ 144 (406)
T PF00474_consen 79 YGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI--------------PYNTAILIVGVIVIIYTFFGGLRAVA 144 (406)
T ss_dssp T-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHHTTCTT------
T ss_pred cCCchhhhhhcccccchhhhhhhhccccccccchhhccch--------------hhhHHHHHHHHHHHHhhhhhhHhhhh
Confidence 99988 665555566666666667677777777766531 11223445555555566666677777
Q ss_pred HHHHHHHHH
Q 023582 191 WLSILAAVM 199 (280)
Q Consensus 191 ~~S~~~~~~ 199 (280)
+...+=.+.
T Consensus 145 ~td~iQ~~i 153 (406)
T PF00474_consen 145 WTDFIQGVI 153 (406)
T ss_dssp SHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666554443
No 65
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=93.86 E-value=2.7 Score=40.61 Aligned_cols=150 Identities=13% Similarity=0.074 Sum_probs=85.2
Q ss_pred cccccccchHHHHHHHHHHhHhhh-hhhHHHHHHHHHhhhHHHHHH--HHHHHHH-HHHHHHHHHcccCCCCCCCCCccc
Q 023582 29 DGRAKRTGTWVTASAHIITAVIGS-GVLSLAWAIAQLGWVAGPAVL--MAFSFIT-YYTSTLLSDCYRSPDPVTGKRNYT 104 (280)
Q Consensus 29 ~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~a~~~~G~i~g~ill--~~~~~i~-~yt~~lL~~~~~~~~~~~g~~~~s 104 (280)
.-.-.|+.+++...+.+..+.+|+ ..++.|-...+.|+-+..... .....++ .+-+..+.+..|+. +..|
T Consensus 36 y~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~------~~~T 109 (483)
T PRK09442 36 YFLGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY------NAVT 109 (483)
T ss_pred eeeeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCcc
Confidence 334466667888888887776665 556678666666753211110 0111111 11222222323322 2679
Q ss_pred HHHHHHHHcCCcc-hhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcC
Q 023582 105 YMDVVRASLGGRS-VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI 183 (280)
Q Consensus 105 y~~i~~~~~G~~g-~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 183 (280)
..|.-++-||++. +.+..+...+..+....+.+...|..++.++. ++...-+++..+++...+..
T Consensus 110 ~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~ 175 (483)
T PRK09442 110 LNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------------ISYETGLLIFGITVALYTAF 175 (483)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHh
Confidence 9999999999764 55555555655555556666667777776653 11122344555566667777
Q ss_pred CCchhhhHHHHHHHH
Q 023582 184 PNFHKLSWLSILAAV 198 (280)
Q Consensus 184 r~l~~l~~~S~~~~~ 198 (280)
--++...+.-.+=.+
T Consensus 176 GGl~av~~TD~iQ~~ 190 (483)
T PRK09442 176 GGFRAVVLTDALQGI 190 (483)
T ss_pred ccHHHHHHHHHHHHH
Confidence 778877776665544
No 66
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=93.72 E-value=0.86 Score=43.39 Aligned_cols=79 Identities=13% Similarity=0.227 Sum_probs=58.9
Q ss_pred cccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHh
Q 023582 102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS 181 (280)
Q Consensus 102 ~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~ 181 (280)
..-..+++++.+|+.|..+..+.+.+.|+-+|++-....+|.++++++. .+-..|.+++.++-+.++
T Consensus 260 ~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k-------------isY~~~v~i~~i~S~~ia 326 (427)
T PF05525_consen 260 AELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPK-------------ISYKVWVIIFTIFSFIIA 326 (427)
T ss_pred HHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cChHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999999988751 222456666666656555
Q ss_pred cCCCchhhhHHHH
Q 023582 182 QIPNFHKLSWLSI 194 (280)
Q Consensus 182 ~~r~l~~l~~~S~ 194 (280)
.. -++++=.+|.
T Consensus 327 n~-Gl~~Ii~~s~ 338 (427)
T PF05525_consen 327 NL-GLDQIIKISV 338 (427)
T ss_pred Hh-CHHHHHHHHH
Confidence 33 3444444443
No 67
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=93.51 E-value=2.3 Score=39.96 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=87.6
Q ss_pred ccchHHHHHHHHHHhHhhh-hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHH
Q 023582 34 RTGTWVTASAHIITAVIGS-GVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRAS 112 (280)
Q Consensus 34 ~~~s~~~a~~~l~~~~iG~-GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~ 112 (280)
|+-+++...+.+..+.+|+ ..++.|-...+.|+. +................+..+..|+. | ..|..|.-+.-
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~T~~e~l~~R 75 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINN----G--AYTMPEYLEKR 75 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHc----C--CCchhHHHHHH
Confidence 4456677777777665554 456688777777853 22222222222333344444443321 2 67999999999
Q ss_pred cCC-cchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhH
Q 023582 113 LGG-RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSW 191 (280)
Q Consensus 113 ~G~-~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~ 191 (280)
||+ ..+.+..+...+..+....+.+...+..++.++.. +...-+++..++++..+..--++...+
T Consensus 76 yg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi--------------~~~~~~ii~~~i~~~Yt~~GG~~av~~ 141 (407)
T TIGR00813 76 FGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL--------------DLYLSLLLLGAITILYTVFGGLKAVVW 141 (407)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--------------hHHHHHHHHHHHHHHHHHHcchHHHHH
Confidence 998 46666677777777777778778888888776531 111223444455555566666777777
Q ss_pred HHHHHHHH
Q 023582 192 LSILAAVM 199 (280)
Q Consensus 192 ~S~~~~~~ 199 (280)
.-.+=.+.
T Consensus 142 Td~iQ~~i 149 (407)
T TIGR00813 142 TDTIQAVI 149 (407)
T ss_pred HHHHHHHH
Confidence 66655443
No 68
>PRK11017 codB cytosine permease; Provisional
Probab=92.88 E-value=4.8 Score=37.98 Aligned_cols=83 Identities=17% Similarity=0.083 Sum_probs=52.4
Q ss_pred cccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHh
Q 023582 102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS 181 (280)
Q Consensus 102 ~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~ 181 (280)
..++.-++|..||++|.++..+...+...|=........++.++++.. .+...+.+++.++..+.+
T Consensus 70 G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~--------------~~~~~~~~i~~~l~~~~~ 135 (404)
T PRK11017 70 GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG--------------LDINLLIVLSGLLMTVTA 135 (404)
T ss_pred CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHH
Confidence 479999999999999999988888887776555555556666655432 011124455555555554
Q ss_pred cC--CCchhhhHHHHHHHH
Q 023582 182 QI--PNFHKLSWLSILAAV 198 (280)
Q Consensus 182 ~~--r~l~~l~~~S~~~~~ 198 (280)
.. |.++.+..++.....
T Consensus 136 ~~G~~~i~~~~~~~~p~~~ 154 (404)
T PRK11017 136 YFGISALTILSRIAVPAIA 154 (404)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 43 445555555554443
No 69
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=92.67 E-value=4.2 Score=38.94 Aligned_cols=86 Identities=19% Similarity=0.167 Sum_probs=58.9
Q ss_pred cHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhc-
Q 023582 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ- 182 (280)
Q Consensus 104 sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~- 182 (280)
+=-.++|..||++|.++..+++.+.+.|-.....+..++...+. . ..+...++++.++++...++
T Consensus 82 pqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~------------~--~~~~~~~ili~g~l~~l~~if 147 (442)
T COG1457 82 PQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG------------T--GLPVWAGILIIGVLMTLVTIF 147 (442)
T ss_pred ChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC------------C--CCcHHHHHHHHHHHHHHHHHH
Confidence 33456788899999999999999999999999999988872111 1 12224556666666555554
Q ss_pred -CCCchhhhHHHHHHHHHHHHH
Q 023582 183 -IPNFHKLSWLSILAAVMSFAY 203 (280)
Q Consensus 183 -~r~l~~l~~~S~~~~~~~~~~ 203 (280)
.|-++.+.+++..-.+..+.+
T Consensus 148 G~r~l~~l~~~a~~~~~~lf~~ 169 (442)
T COG1457 148 GYRALHKLERIAVPLLLLLFLY 169 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777776666554443
No 70
>PRK09395 actP acetate permease; Provisional
Probab=92.56 E-value=6.8 Score=38.59 Aligned_cols=145 Identities=14% Similarity=0.125 Sum_probs=82.6
Q ss_pred cccccchHHHHHHHHHHhHhhh-hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582 31 RAKRTGTWVTASAHIITAVIGS-GVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (280)
Q Consensus 31 ~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~ 109 (280)
.-.|+.+++...+.+..+.+++ ..++.|-.....|+.. ........+.......++.+-.|+ .| .+|+.|.-
T Consensus 66 ~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~----~g--~~T~~d~l 138 (551)
T PRK09395 66 TAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLRN----LG--KYTFADVA 138 (551)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhh----CC--CccHHHHH
Confidence 4455667777777777776664 4567897777788642 211111111111222333443332 23 57999999
Q ss_pred HHHcCC-cchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchh
Q 023582 110 RASLGG-RSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHK 188 (280)
Q Consensus 110 ~~~~G~-~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~ 188 (280)
+.-||+ +.|.+..+...+..+.-..+.+...|..++.++. ++...-+++..+++..-+..-=++.
T Consensus 139 ~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------------i~~~~~ili~~~i~~iYt~~GGm~a 204 (551)
T PRK09395 139 SYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------------LNYHVAVVLVGVLMMVYVLFGGMLA 204 (551)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhhcchHH
Confidence 999984 5777777766665555555555666666666542 1111223444555555566666777
Q ss_pred hhHHHHHH
Q 023582 189 LSWLSILA 196 (280)
Q Consensus 189 l~~~S~~~ 196 (280)
..+.-.+=
T Consensus 205 v~~TD~iQ 212 (551)
T PRK09395 205 TTWVQIIK 212 (551)
T ss_pred HHHHHHHH
Confidence 66665543
No 71
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=91.81 E-value=13 Score=36.71 Aligned_cols=149 Identities=16% Similarity=0.118 Sum_probs=86.1
Q ss_pred CccccccccchHHHHHHHHHHhHhhh-hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccH
Q 023582 27 DDDGRAKRTGTWVTASAHIITAVIGS-GVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTY 105 (280)
Q Consensus 27 ~~~~~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy 105 (280)
+|.-.-.|+-+++...+.+..+.+++ ..++.|-.....|+- +................++.+-.|+. | ..|-
T Consensus 25 ~dy~laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~rr~----~--~~T~ 97 (552)
T TIGR03648 25 SEFYVAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYD-GLAYLMGWTGGYVLLALLLAPYLRKF----G--KYTV 97 (552)
T ss_pred HHHeeeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHC----C--CccH
Confidence 44455677778898888888887754 567788777777753 21111111111122334555544432 2 5688
Q ss_pred HHHHHHHcCCc-chhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCC
Q 023582 106 MDVVRASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIP 184 (280)
Q Consensus 106 ~~i~~~~~G~~-g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r 184 (280)
.|.-++-||++ .|.+..+...+..+.-....+...+..++.+... +...-+++..+++..-+..-
T Consensus 98 ~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi--------------~~~~~iii~~~i~~iYt~~G 163 (552)
T TIGR03648 98 PDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV--------------DFETGVFIGMAIVFFYAVLG 163 (552)
T ss_pred HHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHhh
Confidence 88888888855 5676666666666665566566667776665531 11122344445555556555
Q ss_pred CchhhhHHHHHH
Q 023582 185 NFHKLSWLSILA 196 (280)
Q Consensus 185 ~l~~l~~~S~~~ 196 (280)
=++...+.-.+=
T Consensus 164 G~~aV~~TD~iQ 175 (552)
T TIGR03648 164 GMKGVTWTQVAQ 175 (552)
T ss_pred hHHHHHHHHHHH
Confidence 677666655443
No 72
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=91.53 E-value=12 Score=36.38 Aligned_cols=116 Identities=11% Similarity=-0.062 Sum_probs=78.4
Q ss_pred CccccccccchHHHHHHHHHHhHhh-hhhhHHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHcccCCCCCCCCCc
Q 023582 27 DDDGRAKRTGTWVTASAHIITAVIG-SGVLSLAWAIAQLGWVAGPAVLM---AFSFITYYTSTLLSDCYRSPDPVTGKRN 102 (280)
Q Consensus 27 ~~~~~~~~~~s~~~a~~~l~~~~iG-~GiL~lP~a~~~~G~i~g~ill~---~~~~i~~yt~~lL~~~~~~~~~~~g~~~ 102 (280)
||.....|+-+.+-.......+..+ .-.+++|-...+.|+...-+... .......+-..-+.+..++ ++.
T Consensus 31 ~dy~~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~------~~~ 104 (493)
T COG0591 31 EDYFLGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA------RGA 104 (493)
T ss_pred HHHhccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cCC
Confidence 3334445544455666677666666 77888999988888653222222 2222333333333443322 226
Q ss_pred ccHHHHHHHHcC-CcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHh
Q 023582 103 YTYMDVVRASLG-GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVK 148 (280)
Q Consensus 103 ~sy~~i~~~~~G-~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~ 148 (280)
.|..|.-+.-|| ++.|.+..+...+..+.-+...+...+..++.++
T Consensus 105 ~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~ 151 (493)
T COG0591 105 TTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLF 151 (493)
T ss_pred ccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 799999999999 8999999999999999999999999998886554
No 73
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=90.01 E-value=13 Score=35.88 Aligned_cols=153 Identities=11% Similarity=0.057 Sum_probs=78.9
Q ss_pred cccccccchHHHHHHHHHHhHhhhh-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHH
Q 023582 29 DGRAKRTGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMD 107 (280)
Q Consensus 29 ~~~~~~~~s~~~a~~~l~~~~iG~G-iL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~ 107 (280)
.-.-.|+-+++...+.+..+.+++. .++.|-.....|+.. ........+.......++.+-.|...+ .+.+..|-.|
T Consensus 31 f~lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~~~~T~~e 108 (487)
T TIGR02121 31 YVLGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTE-AAHNSITLPD 108 (487)
T ss_pred HeeeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhH-hhcCCccHHH
Confidence 3344666678888888877766644 566887777778742 222111112222333444432221100 0112678999
Q ss_pred HHHHHcCCcchh---hhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCC
Q 023582 108 VVRASLGGRSVQ---LCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIP 184 (280)
Q Consensus 108 i~~~~~G~~g~~---~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r 184 (280)
.-+.-||++.+. +..+...+....-...-+...+..++.+++. +...-+++..+++..-+..-
T Consensus 109 ~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi--------------~~~~~iii~~~i~~~Yt~~G 174 (487)
T TIGR02121 109 FFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL--------------DYKTGLLIGALIIVIYTFFG 174 (487)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--------------cHHHHHHHHHHHHHHHHHhh
Confidence 999999965443 3333333333333344444556666655431 11122344445555555555
Q ss_pred CchhhhHHHHHHH
Q 023582 185 NFHKLSWLSILAA 197 (280)
Q Consensus 185 ~l~~l~~~S~~~~ 197 (280)
=++...+.-.+=.
T Consensus 175 Gl~av~~TD~iQ~ 187 (487)
T TIGR02121 175 GFLAVSWTDFVQG 187 (487)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666655443
No 74
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=89.99 E-value=21 Score=35.19 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=82.9
Q ss_pred cccccchHHHHHHHHHHhHhh-hhhhHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHcccCCCCCCCCCcccHHHH
Q 023582 31 RAKRTGTWVTASAHIITAVIG-SGVLSLAWAIAQLGWVAGPAVLMAFSFITY-YTSTLLSDCYRSPDPVTGKRNYTYMDV 108 (280)
Q Consensus 31 ~~~~~~s~~~a~~~l~~~~iG-~GiL~lP~a~~~~G~i~g~ill~~~~~i~~-yt~~lL~~~~~~~~~~~g~~~~sy~~i 108 (280)
.-.|+.+++...+.+..+.++ ...++.|-...+.|+- +....+ ...+.+ ....++.+-.|+ .| .+|..|.
T Consensus 64 laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~-g~~~~~~i~~~~~a~~lrr----~g--~~T~~d~ 135 (549)
T TIGR02711 64 TAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSL-GFLVGWPIILFLIAERLRN----LG--RYTFADV 135 (549)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHH-HHHHHHHHHHHHHHHHHHH----cC--CccHHHH
Confidence 345555677777777776554 5678899777777864 222211 111121 223344443332 23 5799999
Q ss_pred HHHHcC-CcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCch
Q 023582 109 VRASLG-GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFH 187 (280)
Q Consensus 109 ~~~~~G-~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~ 187 (280)
-++-|| |..|.+..+...+.++.-....+...|..++.++.. +...-+++..+++..-+..-=++
T Consensus 136 l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi--------------~~~~~iii~~~i~~~Yt~~GGm~ 201 (549)
T TIGR02711 136 ASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL--------------NYHVAVVLVGILMVMYVLFGGML 201 (549)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHhhhhH
Confidence 888887 456777666666665555566666677777666531 11122344555555556666677
Q ss_pred hhhHHHHHHH
Q 023582 188 KLSWLSILAA 197 (280)
Q Consensus 188 ~l~~~S~~~~ 197 (280)
...+...+=.
T Consensus 202 av~~td~iQ~ 211 (549)
T TIGR02711 202 ATTWVQIIKA 211 (549)
T ss_pred HHHHHHHHHH
Confidence 7777655543
No 75
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=89.52 E-value=5.4 Score=37.82 Aligned_cols=49 Identities=24% Similarity=0.144 Sum_probs=40.9
Q ss_pred cccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhh
Q 023582 102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRS 150 (280)
Q Consensus 102 ~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~ 150 (280)
..++.-++|..||.+|..+..+...+...|=...-..+.++.+..+.+.
T Consensus 70 Gl~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~ 118 (440)
T PF02133_consen 70 GLPTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGI 118 (440)
T ss_dssp ---HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3688999999999999999999999999988888888999999988864
No 76
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=89.32 E-value=5.6 Score=37.64 Aligned_cols=81 Identities=14% Similarity=0.219 Sum_probs=61.8
Q ss_pred ccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhc
Q 023582 103 YTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ 182 (280)
Q Consensus 103 ~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~ 182 (280)
.=..+..++.||+.|+.+..+++.+.|+-++++-+...+|.++++.+. ++-..|..++.++-+.++.
T Consensus 263 ~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~-------------~SY~~~v~if~i~sflvan 329 (431)
T COG1114 263 QILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK-------------LSYKTWVIIFTLISFLVAN 329 (431)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------ccHHHHHHHHHHHHHHHHH
Confidence 457788999999999999999999999999999999999999988752 2223566666666666664
Q ss_pred CCCchhhhHHHHHHH
Q 023582 183 IPNFHKLSWLSILAA 197 (280)
Q Consensus 183 ~r~l~~l~~~S~~~~ 197 (280)
. .++++-.+|..-.
T Consensus 330 ~-GL~~Ii~isvPvL 343 (431)
T COG1114 330 L-GLEQIIKISVPVL 343 (431)
T ss_pred h-hHHHHHHHHHHHH
Confidence 4 4555655555443
No 77
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=85.69 E-value=11 Score=36.14 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=56.0
Q ss_pred cHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcC
Q 023582 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI 183 (280)
Q Consensus 104 sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 183 (280)
=...+.++.+|++++.+..+.+.+.|+-++++-.-..++.+++.++ .+...|.++..++.++++..
T Consensus 266 il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--------------isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 266 ILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP--------------LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CcHHHHHHHHHHHHHHHHHh
Confidence 3566788999999999999999999999999999999999887653 12235666666777777754
Q ss_pred CCchhhhHHHH
Q 023582 184 PNFHKLSWLSI 194 (280)
Q Consensus 184 r~l~~l~~~S~ 194 (280)
-++++=.++.
T Consensus 332 -G~~~II~~s~ 341 (439)
T PRK15433 332 -GLSQLIQISV 341 (439)
T ss_pred -HHHHHHHHHH
Confidence 3444333333
No 78
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=85.35 E-value=36 Score=32.64 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCcchhhhHHHHHHHH
Q 023582 53 GVLSLAWAIAQLGWVAGPAVLMAFSFITYY-TSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNL 129 (280)
Q Consensus 53 GiL~lP~a~~~~G~i~g~ill~~~~~i~~y-t~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~g~~~v~i~~~~~~ 129 (280)
++..+|.+ ++.|.. .++..++.+++... .+....|.....+. .| ..-.-.++++|+++..+..+..++..
T Consensus 18 ~~~~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~G----G~y~~~~~a~G~~~gf~~gw~~w~~~ 88 (474)
T TIGR03813 18 SLRGLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAWPE-KG----GVFRWVGEAFGARWGFLAIFMLWAQV 88 (474)
T ss_pred HhhcchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCC-CC----CceeeHhhhcChhHHHHHHHHHHHHH
Confidence 34556755 677842 23333333333322 44445565443322 22 33455688899988887777666654
No 79
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=82.62 E-value=14 Score=36.14 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHcc
Q 023582 37 TWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAV-LMAFSFITYYTSTLLSDCY 91 (280)
Q Consensus 37 s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~il-l~~~~~i~~yt~~lL~~~~ 91 (280)
+.+...|.++....|. .-+|.+.+..+|-. +.+. .++.+....-.+.=|.|..
T Consensus 54 s~fg~sFs~~g~~~~i-~tsm~~gl~~gG~~-~~vwgwlIa~~~~i~va~slaEl~ 107 (550)
T KOG1289|consen 54 SIFGISFSLMGLLPGI-ATSMAYGLGSGGPP-TLVWGWLIAGFFSICVALSLAELC 107 (550)
T ss_pred HHHHHHHHHhcchhhh-hhheeeccccCChH-HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3334444444433332 22344444444422 2221 2233334444445566643
No 80
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=74.58 E-value=87 Score=30.41 Aligned_cols=153 Identities=12% Similarity=0.017 Sum_probs=80.2
Q ss_pred cccccccchHHHHHHHHHHhHhhhhh-hHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHcccCCCCCCCCCcccHH
Q 023582 29 DGRAKRTGTWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFIT-YYTSTLLSDCYRSPDPVTGKRNYTYM 106 (280)
Q Consensus 29 ~~~~~~~~s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G~i~g~ill~~~~~i~-~yt~~lL~~~~~~~~~~~g~~~~sy~ 106 (280)
.-.-.|+-+++...+.+..+.+++.. ++.|-...+.|+-. . ...+...+. .....++.+-.+.... .+.+..|..
T Consensus 35 y~lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~-~~~~~~~~~~~l~~~~~~~~l~~~~~-~~~~~~T~~ 111 (502)
T PRK15419 35 YILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-S-WIAIGLTLGAWINWKLVAGRLRVHTE-YNNNALTLP 111 (502)
T ss_pred heeeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCceeHH
Confidence 34456677788888888877666655 56888877888642 1 111111111 1112222211110000 011257888
Q ss_pred HHHHHHcCCcchh---hhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcC
Q 023582 107 DVVRASLGGRSVQ---LCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQI 183 (280)
Q Consensus 107 ~i~~~~~G~~g~~---~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 183 (280)
|.-++-||++.|. +..+...+....-+.+-+...+..++.++. ++...-+++..++++.-+..
T Consensus 112 e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~ 177 (502)
T PRK15419 112 DYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------------MSYETALWAGAAATILYTFI 177 (502)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHh
Confidence 9989999875443 344444444444444444556666665542 11112244555566666666
Q ss_pred CCchhhhHHHHHHHH
Q 023582 184 PNFHKLSWLSILAAV 198 (280)
Q Consensus 184 r~l~~l~~~S~~~~~ 198 (280)
-=++...+.-.+=.+
T Consensus 178 GGl~aV~~TD~iQ~~ 192 (502)
T PRK15419 178 GGFLAVSWTDTVQAS 192 (502)
T ss_pred hhHHHHHHHHHHHHH
Confidence 677777776655443
No 81
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=71.66 E-value=67 Score=29.57 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=51.7
Q ss_pred ccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhc
Q 023582 103 YTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQ 182 (280)
Q Consensus 103 ~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~ 182 (280)
.+..|..++-+||+..++..+...+.+.....+-++-.+..++.++. .+...+.++..+..+-+.+
T Consensus 42 ~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g--------------~~~~~~~~~~~~~~~~ll~ 107 (358)
T PF01566_consen 42 KGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG--------------IPLWIWVLLVAVIAILLLW 107 (358)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CCcHHHHHHHHHHHHHHHH
Confidence 37778888888999999888888888888888877777777665542 1223444444444333333
Q ss_pred --CCCchhhhHHHHH
Q 023582 183 --IPNFHKLSWLSIL 195 (280)
Q Consensus 183 --~r~l~~l~~~S~~ 195 (280)
.++.+.+-.+..+
T Consensus 108 ~~~~~y~~~E~~~~~ 122 (358)
T PF01566_consen 108 LSSGGYRRLERILKV 122 (358)
T ss_pred HHhccchHHHHHHHH
Confidence 5667766665443
No 82
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=71.35 E-value=93 Score=29.35 Aligned_cols=100 Identities=22% Similarity=0.175 Sum_probs=52.9
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcCCcc
Q 023582 40 TASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVL--MAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRS 117 (280)
Q Consensus 40 ~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill--~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G~~g 117 (280)
+..+.+..+.+|.|-++ +..+.|--.|--++ ++.+.+..+....+ +.|- .-++| .+-.|+.++-++|+.
T Consensus 8 GPg~lva~a~idPG~i~---t~~~aGa~fGy~LLW~llls~~~~~~~Q~~--aaRl-g~vTg---~~l~~~~r~~~~~~~ 78 (390)
T TIGR01197 8 GPGFLMSIAYIDPGNYS---TDLQAGAAAGYKLLWVLLLSNIMALLLQRL--CARL-GVVTG---LDLAEVCREHYPKVP 78 (390)
T ss_pred ChHHHHHHHhcCchHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHH--HHHh-eeecC---CCHHHHHHHHCCCch
Confidence 33445555667777776 23444433333333 22222222222222 2221 11233 489999999999988
Q ss_pred hhhhHHHHHHHHHHHHHhhHhhhhhhHHHHh
Q 023582 118 VQLCGLAQYGNLIGVTIGYTITASISMVAVK 148 (280)
Q Consensus 118 ~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~ 148 (280)
++...+...+...+...+-++-.+..++.++
T Consensus 79 ~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~ 109 (390)
T TIGR01197 79 RITLWILAELAIIATDMAEVIGTAIALNLLS 109 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8766665555555555555555555555443
No 83
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=66.77 E-value=1.2e+02 Score=28.91 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=41.5
Q ss_pred cccchHHHHHHHHHHhHhhhhhhH-HHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHcccC
Q 023582 33 KRTGTWVTASAHIITAVIGSGVLS-LAWAIAQLGWVAGPAVLMAFSFI---TYYTSTLLSDCYRS 93 (280)
Q Consensus 33 ~~~~s~~~a~~~l~~~~iG~GiL~-lP~a~~~~G~i~g~ill~~~~~i---~~yt~~lL~~~~~~ 93 (280)
+++.|-++|.+.-+.+.+|+|=++ ...|.+.+|- ..++-+.+.+++ +-|+-..|...+|.
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~Gmatk~~E~~La~~yR~ 79 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALLGMATKYAEVTLAQKYRE 79 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHHHHHHHHheE
Confidence 445688999999999999999665 8999998882 245555555444 44444556555554
No 84
>TIGR00909 2A0306 amino acid transporter.
Probab=59.46 E-value=1.4e+02 Score=27.87 Aligned_cols=47 Identities=13% Similarity=-0.070 Sum_probs=40.6
Q ss_pred ccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhh
Q 023582 103 YTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKR 149 (280)
Q Consensus 103 ~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~ 149 (280)
....++.++..|+++..++.+...+.+++.+.+.+...+..+..+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~ 310 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSR 310 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35778888888999999999999999999999999998888877764
No 85
>PRK00701 manganese transport protein MntH; Reviewed
Probab=59.22 E-value=1.7e+02 Score=28.04 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=34.5
Q ss_pred ccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHh
Q 023582 103 YTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVK 148 (280)
Q Consensus 103 ~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~ 148 (280)
.+..|+.++-|||+..++..+...+-+.+..++-++-.+..++.++
T Consensus 94 ~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 94 RDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred CCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999988887777777777777776666665655443
No 86
>PRK10484 putative transporter; Provisional
Probab=58.61 E-value=1.6e+02 Score=28.64 Aligned_cols=95 Identities=12% Similarity=0.030 Sum_probs=54.8
Q ss_pred CccccccccchHHHHHHHHHHhHhhhh-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccH
Q 023582 27 DDDGRAKRTGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTY 105 (280)
Q Consensus 27 ~~~~~~~~~~s~~~a~~~l~~~~iG~G-iL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy 105 (280)
||.-.-.|+-+++...+.+..+.++++ .++.|-...+.|+... ...............++.+-.++ .| ..|.
T Consensus 31 ~dyflagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~-~~~~~~~~~~~~~~~~~~p~~~r----~~--~~T~ 103 (523)
T PRK10484 31 DGYFLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVM-AWEVTAAIALIILALIFLPRYLK----SG--ITTI 103 (523)
T ss_pred hhheecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHHHHHh----cC--CccH
Confidence 444455677788888888877766554 4568866666775421 11111111111223333332222 12 6799
Q ss_pred HHHHHHHcCCcchhhhHHHHHHH
Q 023582 106 MDVVRASLGGRSVQLCGLAQYGN 128 (280)
Q Consensus 106 ~~i~~~~~G~~g~~~v~i~~~~~ 128 (280)
.|.-++-||++.+.+......+.
T Consensus 104 ~e~l~~Ryg~~~~~~~~~~~~i~ 126 (523)
T PRK10484 104 PDFLEERYDKTTRRIVSILFLIG 126 (523)
T ss_pred HHHHHHhcCchhHHHHHHHHHHH
Confidence 99999999998887766654444
No 87
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=51.67 E-value=86 Score=31.28 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=64.2
Q ss_pred hHHHHHH-HHHHhHhhhh-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcC
Q 023582 37 TWVTASA-HIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLG 114 (280)
Q Consensus 37 s~~~a~~-~l~~~~iG~G-iL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G 114 (280)
+|++.+| ..+-.+.|.= -|-++|...|+|...+++++.....++..|..=-+........+.| -.|--++ +.+|
T Consensus 31 g~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~G---g~yflis-~slg 106 (643)
T KOG2083|consen 31 GWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSG---GVYFLIS-RSLG 106 (643)
T ss_pred eeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccC---cEEEEEE-eccc
Confidence 3444444 3333455542 2458999999999999998888777776665333322111111112 1222222 2345
Q ss_pred CcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhh
Q 023582 115 GRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRS 150 (280)
Q Consensus 115 ~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~ 150 (280)
+...-..++...+.+.-.|.-|.+-.++++..+++.
T Consensus 107 ~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~ 142 (643)
T KOG2083|consen 107 PEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFET 142 (643)
T ss_pred ccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 544444555555556667888899999999998863
No 88
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=47.67 E-value=1.1e+02 Score=29.46 Aligned_cols=200 Identities=13% Similarity=0.084 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHhHhhhh-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHcc--cCCCCCCCCCcccHHHHHHHH
Q 023582 37 TWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITYYTS-TLLSDCY--RSPDPVTGKRNYTYMDVVRAS 112 (280)
Q Consensus 37 s~~~a~~~l~~~~iG~G-iL~lP~a~~~~G~i~g~ill~~~~~i~~yt~-~lL~~~~--~~~~~~~g~~~~sy~~i~~~~ 112 (280)
|-.+=....+.+.+|.| +.-.||-..+-| .|..++....++-..+. .++.|.. |..+ +....+|+.+..
T Consensus 10 SrlGFILAa~GsAVGLGNiWrFPy~~~~nG--GgAFll~yli~~l~~GiPlli~Ef~iGr~~~---~~~~~a~~~l~~-- 82 (439)
T COG0733 10 SRLGFILAAAGSAVGLGNIWRFPYMAGENG--GGAFLLPYLIFLLLVGIPLLLAEFAIGRRGR---KNAVGAFRKLAP-- 82 (439)
T ss_pred hHHHHHHHHHHHHhcccccccCCeEeeecC--cchHHHHHHHHHHHHhHHHHHHHHHhhhhcC---CChhHHHHHhcc--
Confidence 34444566677888877 456898887777 24444333333333333 4455542 2111 111346776665
Q ss_pred cCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccc---cCC-Cccc-ccc-CCc----hhHHHHH---HHHHH
Q 023582 113 LGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFH---RHG-HHVK-CYT-SNN----PLMIIFA---CIQIV 179 (280)
Q Consensus 113 ~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~---~~~-~~~~-~~~-~~~----~~~~i~~---~i~~p 179 (280)
+|+++ .+.....+.++..+.-|.+++|=.+.-+....... +.+ .... -+. +.. .+.+++. ..+.-
T Consensus 83 -~~~~~-~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~ 160 (439)
T COG0733 83 -KKKWE-WIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVS 160 (439)
T ss_pred -Cccch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 44444 45555566667777777777776666555432110 000 0000 001 111 1111111 12233
Q ss_pred HhcCCCchhhhHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccc--cCCCCCchhHHHHHHHHHHHHHHHhc
Q 023582 180 LSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT--VGVDVSASEKVWRAFQAIGDVAFAYA 255 (280)
Q Consensus 180 l~~~r~l~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~a~g~~~faf~ 255 (280)
....|-+.+.+.+-+...+..+. +.++.+...+ +..+|+. +.|+++...+..-...|+|+.+|+-+
T Consensus 161 ~GV~~GIEk~~kimMP~Lfvl~i---~Lvi~~~tLp-------GA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLS 228 (439)
T COG0733 161 RGVKKGIEKANKIMMPLLFVLFI---ILVIRAVTLP-------GAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLS 228 (439)
T ss_pred HhHHhhHHHHHHHHHHHHHHHHH---HHHHHHHcCc-------cHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHH
Confidence 34445578888888888764443 2222222211 1223333 23444444433345578888888876
No 89
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=41.26 E-value=3.4e+02 Score=26.22 Aligned_cols=62 Identities=23% Similarity=0.221 Sum_probs=42.6
Q ss_pred ccccchHHHHHHHHHHhHhhhhhhH-HHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHcccCC
Q 023582 32 AKRTGTWVTASAHIITAVIGSGVLS-LAWAIAQLGWVAGPAVLMAFSF---ITYYTSTLLSDCYRSP 94 (280)
Q Consensus 32 ~~~~~s~~~a~~~l~~~~iG~GiL~-lP~a~~~~G~i~g~ill~~~~~---i~~yt~~lL~~~~~~~ 94 (280)
+++..|.+++...-+.+.+|+|=++ ..-|.+-.|- ..+.-+-+.++ .+-|.=..|...+|..
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGP-GAvFWMWi~Al~Gmat~f~E~~La~~Yr~k 124 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGP-GAVFWMWIVALFGMATKFAESTLAQKYRVK 124 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCC-ccHHHHHHHHHHHHHHHHHHHHHHhheeEe
Confidence 3445588999999999999999766 8999998882 24444444444 4555555666666543
No 90
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=39.66 E-value=50 Score=27.46 Aligned_cols=75 Identities=19% Similarity=0.360 Sum_probs=49.0
Q ss_pred ccccccccccCCCCCCCCCCCCCccccccccchHHHHHHHHHHhHhhhhhhHHHHHHH--HHhhhHHHHHHHHHHHHHHH
Q 023582 5 MQKNSMYIEQNDPEGDIRKDFLDDDGRAKRTGTWVTASAHIITAVIGSGVLSLAWAIA--QLGWVAGPAVLMAFSFITYY 82 (280)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~--~~G~i~g~ill~~~~~i~~y 82 (280)
+++|+++.++.|+++++-. .|. .. ..|++.|+|...-+.+|.+.|+|=.++. +.||++ .....++=+
T Consensus 53 f~~r~y~v~~~d~~~~~it---FeG--~V-~pS~~lA~fLt~l~~~Gl~cl~LVL~~l~P~~g~~~-----~~L~lLsPl 121 (173)
T PF12046_consen 53 FEQRNYRVAEGDAEGEVIT---FEG--FV-APSWFLAIFLTFLAAIGLACLGLVLSILFPDLGWWP-----LLLVLLSPL 121 (173)
T ss_pred HHhcCceecccCccccEEE---EEE--Ee-cCcHhHHHHHHHHHHHHHHHHHHHHHHHcCCcccHH-----HHHHHHhhh
Confidence 5788888888888775321 111 12 2378899999999999999999765544 455543 222345566
Q ss_pred HHHHHHHc
Q 023582 83 TSTLLSDC 90 (280)
Q Consensus 83 t~~lL~~~ 90 (280)
++..-++-
T Consensus 122 AG~~Yw~k 129 (173)
T PF12046_consen 122 AGIFYWQK 129 (173)
T ss_pred hhhhhhhc
Confidence 66666664
No 91
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=39.02 E-value=1.9e+02 Score=30.01 Aligned_cols=167 Identities=16% Similarity=0.206 Sum_probs=97.0
Q ss_pred ccccchHHHHHHHHHHhHhhhhhh-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHH
Q 023582 32 AKRTGTWVTASAHIITAVIGSGVL-SLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (280)
Q Consensus 32 ~~~~~s~~~a~~~l~~~~iG~GiL-~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~ 110 (280)
..|-|++.+.+.-.+..+.|.=.+ -|-|..-.+|...+.+++.+++..+..|+.=+...+..- -+++ --+|-=|.|
T Consensus 111 a~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNG-VVpa--GGsYfmISR 187 (1075)
T KOG2082|consen 111 AARMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNG-VVPA--GGSYFMISR 187 (1075)
T ss_pred ccccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccC--CCeeEEEec
Confidence 455667777777777788876332 368888889999899998888888888887777654321 0111 125544443
Q ss_pred HHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHH-Hhhhcc-cccC---CCccccccCCchhHHHHHHHHHH--HhcC
Q 023582 111 ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVA-VKRSNC-FHRH---GHHVKCYTSNNPLMIIFACIQIV--LSQI 183 (280)
Q Consensus 111 ~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~-l~~~~~-~~~~---~~~~~~~~~~~~~~~i~~~i~~p--l~~~ 183 (280)
.+||-..-.+++|.++-.-....-|++-.-+.+-. +++... ++.+ +..+....+.+++-.++.+++.. +.=.
T Consensus 188 -sLGPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GV 266 (1075)
T KOG2082|consen 188 -SLGPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGV 266 (1075)
T ss_pred -ccCccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHH
Confidence 35666666788888887777777787766665533 443211 1111 11111111334443333333222 2233
Q ss_pred CCchhhhHHHHHHHHHHHH
Q 023582 184 PNFHKLSWLSILAAVMSFA 202 (280)
Q Consensus 184 r~l~~l~~~S~~~~~~~~~ 202 (280)
|-.++++.+++..++.+++
T Consensus 267 K~Vnk~A~vfL~CVILSIl 285 (1075)
T KOG2082|consen 267 KFVNKFAPVFLACVILSIL 285 (1075)
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5667777777777665443
No 92
>PRK09928 choline transport protein BetT; Provisional
Probab=38.54 E-value=4.5e+02 Score=26.88 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=18.6
Q ss_pred HHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHh
Q 023582 105 YMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTI 138 (280)
Q Consensus 105 y~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i 138 (280)
|.-++++..|+.|+.+=.++++...+|.+++.-+
T Consensus 181 ~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGl 214 (679)
T PRK09928 181 YPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGI 214 (679)
T ss_pred hhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556556544444566666676666433
No 93
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=38.14 E-value=2.2e+02 Score=27.20 Aligned_cols=89 Identities=11% Similarity=0.050 Sum_probs=55.3
Q ss_pred HHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCC
Q 023582 106 MDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPN 185 (280)
Q Consensus 106 ~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~ 185 (280)
.+.-+..+|.++.+++.+++.+..|.+.+++....-+++.-+++. .. .. ..+-+++ +++.++....+
T Consensus 296 ~~Af~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~---------~~-~~--~~~ri~~-i~~~~~G~~~~ 362 (416)
T PF01235_consen 296 QAAFSTVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFGG---------KK-AI--WIYRILF-IAMVFIGAVID 362 (416)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------ce-EE--Eeeeehh-hhhhhhhhccc
Confidence 333445578899999999999999999999999998888877621 00 00 0111122 22334444457
Q ss_pred chhhhHHHHHHHHHHHHHHHhh
Q 023582 186 FHKLSWLSILAAVMSFAYSSIG 207 (280)
Q Consensus 186 l~~l~~~S~~~~~~~~~~~~i~ 207 (280)
++.+..++=++..+..+..++.
T Consensus 363 ~~~vW~~~Di~~~lmai~Nlia 384 (416)
T PF01235_consen 363 LDLVWDLADIANGLMAIPNLIA 384 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 7777666666655544434443
No 94
>PHA02764 hypothetical protein; Provisional
Probab=36.47 E-value=2.8e+02 Score=25.79 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=16.1
Q ss_pred cccchHHHHHH-HHHHhHhhhhhhHHHH
Q 023582 33 KRTGTWVTASA-HIITAVIGSGVLSLAW 59 (280)
Q Consensus 33 ~~~~s~~~a~~-~l~~~~iG~GiL~lP~ 59 (280)
-|..+.+.+++ |+.....|.++ +.|+
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~I-s~~~ 37 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSGI-SYPL 37 (399)
T ss_pred eeeccHHHHHHHHHHhhccchhH-HHHH
Confidence 34456666666 77777777654 5555
No 95
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=35.65 E-value=4.3e+02 Score=25.87 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=53.3
Q ss_pred cccHHHHHH-HHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHH
Q 023582 102 NYTYMDVVR-ASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVL 180 (280)
Q Consensus 102 ~~sy~~i~~-~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl 180 (280)
++|++|... +..-++.|.+..+.-.+--+.-.++.+.-.|..+..+++. +-..=+++-++++...
T Consensus 103 kyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv--------------~~~vgv~ig~ilm~~Y 168 (529)
T COG4147 103 KYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGV--------------PYHVGVVIGGILMMVY 168 (529)
T ss_pred CcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC--------------CceeehhhHhHHHHHH
Confidence 589999855 4455677777666655555555666666777777776641 0012234555666666
Q ss_pred hcCCCchhhhHHHHHHHH
Q 023582 181 SQIPNFHKLSWLSILAAV 198 (280)
Q Consensus 181 ~~~r~l~~l~~~S~~~~~ 198 (280)
+..--|+..+|+..+=.+
T Consensus 169 vv~GGM~atTW~Qi~qav 186 (529)
T COG4147 169 VVLGGMKATTWVQIIQAV 186 (529)
T ss_pred HHhcchhhhhHHHHHHHH
Confidence 777788899998776443
No 96
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=31.42 E-value=4.7e+02 Score=24.97 Aligned_cols=102 Identities=16% Similarity=0.047 Sum_probs=63.5
Q ss_pred chHHHHHHHHHHhHhhhhhhHH-HHHHHHHhhhHHHH--HHHHHHH-HHHHHHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582 36 GTWVTASAHIITAVIGSGVLSL-AWAIAQLGWVAGPA--VLMAFSF-ITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (280)
Q Consensus 36 ~s~~~a~~~l~~~~iG~GiL~l-P~a~~~~G~i~g~i--ll~~~~~-i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~ 111 (280)
.+..+..+....+-+|.|=++- -.+=++.|+-+..+ +..+... +...+.++-. ++| .+..|..++
T Consensus 17 l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgi--------vTG---~~laq~ir~ 85 (416)
T COG1914 17 LALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGI--------VTG---KGLAEAIRE 85 (416)
T ss_pred HHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhC---CcHHHHHHH
Confidence 3455566666666666665553 33445556533222 2222211 1111222222 133 367788888
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHh
Q 023582 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVK 148 (280)
Q Consensus 112 ~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~ 148 (280)
-|+|+..++..+...+....++++-.+..+-.++.++
T Consensus 86 ~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~ 122 (416)
T COG1914 86 RYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLF 122 (416)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999998888888776
No 97
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=30.87 E-value=5.4e+02 Score=25.53 Aligned_cols=47 Identities=15% Similarity=0.041 Sum_probs=39.2
Q ss_pred ccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhh
Q 023582 103 YTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKR 149 (280)
Q Consensus 103 ~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~ 149 (280)
....++-....||++...+..+..+..+..+++-++..+...-...+
T Consensus 325 ~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaR 371 (550)
T KOG1289|consen 325 QPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFAR 371 (550)
T ss_pred ChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Confidence 57889999999999998888999999999898888877777665544
No 98
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=26.87 E-value=3.3e+02 Score=26.51 Aligned_cols=44 Identities=18% Similarity=0.039 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhh
Q 023582 105 YMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKR 149 (280)
Q Consensus 105 y~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~ 149 (280)
-.+.+++.+|.+. +.+.++..+.++|..-+.+...+..+....+
T Consensus 275 av~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~ar 318 (479)
T KOG1287|consen 275 AVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAR 318 (479)
T ss_pred HHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 3568899999998 8999999999999888776666666665554
No 99
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=26.28 E-value=6.3e+02 Score=24.78 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=46.6
Q ss_pred cccHHHHHHHHcCCcchh---hhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCc---cccccCCchhHHHHHH
Q 023582 102 NYTYMDVVRASLGGRSVQ---LCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHH---VKCYTSNNPLMIIFAC 175 (280)
Q Consensus 102 ~~sy~~i~~~~~G~~g~~---~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~---~~~~~~~~~~~~i~~~ 175 (280)
+.+|.-+.|..||-+|.. +....+.+.-||+.+- ..|..++.++.....+.+.++ .....+...++..+..
T Consensus 102 gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty---~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~if 178 (497)
T COG1953 102 GIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTY---AGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIF 178 (497)
T ss_pred CCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHH
Confidence 589999999999987754 3444444444443332 344444444443222211011 0111222333322111
Q ss_pred -HHHHHhcCCCchhhhHHHHHHHHHHH
Q 023582 176 -IQIVLSQIPNFHKLSWLSILAAVMSF 201 (280)
Q Consensus 176 -i~~pl~~~r~l~~l~~~S~~~~~~~~ 201 (280)
++-.++..+-+++++++-..+.....
T Consensus 179 W~l~~l~~~~g~~~Ir~~~~~a~p~~~ 205 (497)
T COG1953 179 WVLQLLVLFKGMESIRKFETWAGPLVY 205 (497)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhchHHH
Confidence 22333455567777776665554433
No 100
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=25.23 E-value=5.8e+02 Score=24.00 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=35.3
Q ss_pred ccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHh
Q 023582 103 YTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVK 148 (280)
Q Consensus 103 ~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~ 148 (280)
..+.++.+..+|+++..++.+...+.++++..++....+..+..+-
T Consensus 260 ~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~a 305 (445)
T PRK10644 260 SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAA 305 (445)
T ss_pred ChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999999988888888888888777777666666655444
No 101
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=22.74 E-value=7.6e+02 Score=24.48 Aligned_cols=33 Identities=18% Similarity=0.096 Sum_probs=21.6
Q ss_pred cHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhh
Q 023582 104 TYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGY 136 (280)
Q Consensus 104 sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y 136 (280)
-|+-++++.-|+.|+.+=-+.++.+.+|..++.
T Consensus 176 l~Pllg~~~~G~~G~~IDi~aiiaTl~GiATsL 208 (537)
T COG1292 176 LYPLLGERIKGPIGHAVDILAIIATLFGIATSL 208 (537)
T ss_pred hhhhhcccccCccchhhHHHHHHHHHHHHHHHH
Confidence 367788887788887654455666666655553
Done!