Query 023582
Match_columns 280
No_of_seqs 120 out of 1376
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 09:18:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.8 1.1E-07 3.6E-12 88.6 16.0 215 32-270 6-220 (445)
2 3gia_A Uncharacterized protein 98.4 9.3E-06 3.2E-10 75.4 17.2 213 32-271 4-218 (444)
3 4djk_A Probable glutamate/gamm 97.3 0.0016 5.6E-08 61.2 11.5 107 30-147 7-117 (511)
4 2jln_A MHP1; hydantoin, transp 97.0 0.011 3.9E-07 55.9 14.2 88 102-199 87-174 (501)
5 2xq2_A Sodium/glucose cotransp 88.9 5.9 0.0002 38.0 13.3 145 33-198 48-194 (593)
6 3dh4_A Sodium/glucose cotransp 88.3 7 0.00024 36.9 13.2 148 31-199 17-166 (530)
7 2a65_A Leutaa, Na(+):neurotran 45.7 1.9E+02 0.0066 27.0 17.3 104 37-149 10-121 (519)
8 4ain_A Glycine betaine transpo 43.2 2E+02 0.0067 27.2 10.9 37 103-139 180-217 (539)
9 3l1l_A Arginine/agmatine antip 40.2 1.9E+02 0.0066 25.4 15.4 48 102-149 259-306 (445)
10 3gia_A Uncharacterized protein 37.1 2.2E+02 0.0074 25.1 12.6 47 103-149 258-304 (444)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.81 E-value=1.1e-07 Score=88.57 Aligned_cols=215 Identities=10% Similarity=-0.057 Sum_probs=127.9
Q ss_pred ccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582 32 AKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (280)
Q Consensus 32 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~ 111 (280)
++|+-+.++..+..+.+++|+|++.+|...++.|.. +.+..++.+++.......+.|.....+. .-+.-+..++
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~-----~Gg~y~~~~~ 79 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPS-----PGGSYAYARR 79 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC-----TTTHHHHHHH
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCC-----CCCchhhHHh
Confidence 456778999999999999999999999998888864 6777777777777777777786543321 2256666789
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhhH
Q 023582 112 SLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSW 191 (280)
Q Consensus 112 ~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~~ 191 (280)
.+||+...++.+..++.......++....++.++..++.. . . ......+.++..++ +-+.-.+..+..++
T Consensus 80 ~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~--~~~~~~~~~~~~~~-~~~in~~g~~~~~~ 149 (445)
T 3l1l_A 80 CFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL------K-D--PWVLTITCVVVLWI-FVLLNIVGPKMITR 149 (445)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG------G-S--HHHHHHHHHHHHHH-HHHHHHHCHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc------c-c--cHHHHHHHHHHHHH-HHHHHHhchHHHHH
Confidence 9999999999998888877777777777777766544310 0 0 01001111111111 22222345555666
Q ss_pred HHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCcc
Q 023582 192 LSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPISK 270 (280)
Q Consensus 192 ~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~~ 270 (280)
+..+.....+....+.+...+.... ++ .. .++ +.+ .....+.+.+.++...+|+|.|......+-+|+|++
T Consensus 150 ~~~~~~~~~i~~~~~~~i~~~~~~~--~~-~~-~~~--~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p 220 (445)
T 3l1l_A 150 VQAVATVLALIPIVGIAVFGWFWFR--GE-TY-MAA--WNV--SGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP 220 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCC--CC-CC-CCC---------------HHHHHHHHHHTTTTTTHHHHGGGGBSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC--hh-hc-ccc--cCc--cCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc
Confidence 5544443322211111212221111 10 00 011 111 111234567789999999999999999999999984
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.42 E-value=9.3e-06 Score=75.38 Aligned_cols=213 Identities=8% Similarity=-0.027 Sum_probs=123.2
Q ss_pred ccccchHHHHHHHHHHhHhhhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHH
Q 023582 32 AKRTGTWVTASAHIITAVIGSGVLSLA-WAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVR 110 (280)
Q Consensus 32 ~~~~~s~~~a~~~l~~~~iG~GiL~lP-~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~ 110 (280)
++|+-+.++.....+..++|+|++..| .+.+..|- ...+..++.+++.......+.|.....++ .-..-+..+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~-----~Gg~y~~~~ 77 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVS-----NAGPIAFIH 77 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCC-----TTTHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----CCcHHHhHH
Confidence 356778999999999999999999876 55566675 56677777788888888888887654432 225667788
Q ss_pred HHcCCcc-hhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhh
Q 023582 111 ASLGGRS-VQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKL 189 (280)
Q Consensus 111 ~~~G~~g-~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l 189 (280)
+.+|++. .-.+.+..++.....+..+....++.+..+++.. . . ......+.++.. +.+-+.-.+..+..
T Consensus 78 ~~~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~-~--~~~~~~~~~~~~-~~~~~in~~g~~~~ 147 (444)
T 3gia_A 78 KAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAP------I-N--TFNIAITEIGIV-AFFTALNFFGSKAV 147 (444)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------C-C--HHHHHHHHHHHH-HHHHHHHHHTHHHH
T ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------C-c--hHHHHHHHHHHH-HHHHHHHHHhHHHH
Confidence 8899963 1223455555555566666777777777655310 0 0 000001111111 11222223355555
Q ss_pred hHHHHHHHHHHHHHHHhhhheeeeecccCCCCCCCccccccCCCCCchhHHHHHHHHHHHHHHHhcCchhhHhhhhCCCc
Q 023582 190 SWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTVGVDVSASEKVWRAFQAIGDVAFAYAFSTVLVEIQASPIS 269 (280)
Q Consensus 190 ~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~g~~~faf~~~~vi~~I~~~M~~ 269 (280)
+++..+.....+....+.+...+.... ++ + +.|. ..+..+.+.+.++...+|+|.|......+-+|+|+
T Consensus 148 ~~~~~~~~~~~i~~~~~~ii~~~~~~~--~~---~-----~~~~-~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~ 216 (444)
T 3gia_A 148 GRAEFFIVLVKLLILGLFIFAGLITIH--PS---Y-----VIPD-LAPSAVSGMIFASAIFFLSYMGFGVITNASEHIEN 216 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC--GG---G-----TSCC-CSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC--hh---h-----cCCC-CCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccC
Confidence 555544433222211111111211111 10 0 1111 12334557788899999999999999999999988
Q ss_pred cc
Q 023582 270 KI 271 (280)
Q Consensus 270 ~~ 271 (280)
+.
T Consensus 217 P~ 218 (444)
T 3gia_A 217 PK 218 (444)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.29 E-value=0.0016 Score=61.18 Aligned_cols=107 Identities=13% Similarity=0.002 Sum_probs=65.2
Q ss_pred ccccccchHHHHHHHHHHhHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHccc--CCCCCCCCCcccH
Q 023582 30 GRAKRTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITY--YTSTLLSDCYR--SPDPVTGKRNYTY 105 (280)
Q Consensus 30 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~i~g~ill~~~~~i~~--yt~~lL~~~~~--~~~~~~g~~~~sy 105 (280)
.+.+|+-++++.....+..++| +.++|. .+..|.. .++..+++.+.. .....+.|... ..+ .| ..
T Consensus 7 ~~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~--~~~~~~i~~~~~~l~~al~~ael~s~~~~P--~G----G~ 75 (511)
T 4djk_A 7 TGKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS--LVFFLLLGGILWFIPVGLCAAEMATVDGWE--EG----GV 75 (511)
T ss_dssp -----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH--HHHHHHHHHHHTHHHHHHHHHHHHTTSCC---------CH
T ss_pred CccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHcccccCC--CC----Ch
Confidence 3446677899999988888886 567775 4566643 333333333332 25566667554 432 22 55
Q ss_pred HHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHH
Q 023582 106 MDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAV 147 (280)
Q Consensus 106 ~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l 147 (280)
-...++.+||+...+..+..++.......++....++.+..+
T Consensus 76 y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (511)
T 4djk_A 76 FAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYI 117 (511)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred hhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899998888888888877766666666666665443
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=97.01 E-value=0.011 Score=55.94 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=62.6
Q ss_pred cccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHh
Q 023582 102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLS 181 (280)
Q Consensus 102 ~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~ 181 (280)
..+|..+.|..||++|..+..++..+.++|-........|+.+..++.... . .. +....++++.++.++++
T Consensus 87 Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g---~~-----~~~v~~~i~~~l~~~~~ 157 (501)
T 2jln_A 87 GINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-G---FT-----NLPLWIVIFGAIQVVTT 157 (501)
T ss_dssp CCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C---CC-----CHHHHHHHHHHHHHHHH
T ss_pred CCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---cc-----hHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999888888889999988764221 0 00 01233455666666766
Q ss_pred cCCCchhhhHHHHHHHHH
Q 023582 182 QIPNFHKLSWLSILAAVM 199 (280)
Q Consensus 182 ~~r~l~~l~~~S~~~~~~ 199 (280)
+. -++.++++..++...
T Consensus 158 ~~-G~~~i~~~~~~~~p~ 174 (501)
T 2jln_A 158 FY-GITFIRWMNVFASPV 174 (501)
T ss_dssp TT-HHHHHHHHHHHHHHH
T ss_pred Hh-CHHHHHHHHHHHHHH
Confidence 44 567776666665443
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=88.93 E-value=5.9 Score=37.95 Aligned_cols=145 Identities=10% Similarity=0.146 Sum_probs=74.2
Q ss_pred cccchHHHHHHHHHHhHhhhh-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHH
Q 023582 33 KRTGTWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRA 111 (280)
Q Consensus 33 ~~~~s~~~a~~~l~~~~iG~G-iL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~ 111 (280)
.|+.+++...+.+..+.+++. .++.|-...+.|+........ .+......+..+..-.++ .| ..|..|.-++
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r----~~--~~T~~e~l~~ 120 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIE----KG--IYTIPEFVEK 120 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHH----TT--CCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHh----CC--CCCcHHHHHH
Confidence 466678888888876665554 468898878888642211111 011111112222222222 12 6799999999
Q ss_pred HcCCcchhhhHHHHHH-HHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchhhh
Q 023582 112 SLGGRSVQLCGLAQYG-NLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLS 190 (280)
Q Consensus 112 ~~G~~g~~~v~i~~~~-~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~l~ 190 (280)
-||++.+.+..++..+ +.+....+-+...+..++.++. ++...-+++.++++...+..-=++...
T Consensus 121 Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~av~ 186 (593)
T 2xq2_A 121 RFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSAVV 186 (593)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHTTC---CC
T ss_pred HccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------ccHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 9999888776655443 2222223333345566666543 111122344455556666666677766
Q ss_pred HHHHHHHH
Q 023582 191 WLSILAAV 198 (280)
Q Consensus 191 ~~S~~~~~ 198 (280)
+.-.+=.+
T Consensus 187 ~TD~iQ~i 194 (593)
T 2xq2_A 187 WTDVIQVF 194 (593)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66554443
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=88.29 E-value=7 Score=36.86 Aligned_cols=148 Identities=10% Similarity=0.132 Sum_probs=77.5
Q ss_pred cccccchHHHHHHHHHHhHhhh-hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCcccHHHHH
Q 023582 31 RAKRTGTWVTASAHIITAVIGS-GVLSLAWAIAQLGWVAGPAVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVV 109 (280)
Q Consensus 31 ~~~~~~s~~~a~~~l~~~~iG~-GiL~lP~a~~~~G~i~g~ill~~~~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~ 109 (280)
.-.|+-+++...+.+..+.+++ -.+++|-.....|+........ .++.-...+..+....++. +..|..|.-
T Consensus 17 laGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~------~~~T~~e~l 89 (530)
T 3dh4_A 17 XAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK------GIYTIPEFV 89 (530)
T ss_dssp CCCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT------TCCSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHHc------CCccHHHHH
Confidence 3456667888888887776655 4677898888888653211111 1111111222223322221 267999999
Q ss_pred HHHcCCcchhhhHHHHHH-HHHHHHHhhHhhhhhhHHHHhhhcccccCCCccccccCCchhHHHHHHHHHHHhcCCCchh
Q 023582 110 RASLGGRSVQLCGLAQYG-NLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHK 188 (280)
Q Consensus 110 ~~~~G~~g~~~v~i~~~~-~~~g~~i~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~r~l~~ 188 (280)
++-||++.+.+..++..+ +.+..+.+-+...+..++.++. ++...-+++.++++..-+..-=++.
T Consensus 90 ~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~a 155 (530)
T 3dh4_A 90 EKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSA 155 (530)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------------CCHHHHHHHHHHHHHHTTC------
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhcchHH
Confidence 999999888777665443 2222233333344555555542 1111223445555566666667777
Q ss_pred hhHHHHHHHHH
Q 023582 189 LSWLSILAAVM 199 (280)
Q Consensus 189 l~~~S~~~~~~ 199 (280)
..+.-.+=.+.
T Consensus 156 V~~TD~iQ~~i 166 (530)
T 3dh4_A 156 VVWTDVIQVFF 166 (530)
T ss_dssp CCSHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77766554443
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=45.67 E-value=1.9e+02 Score=26.98 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHhHhhhh-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHcc--c----CCCCCCCCCcccHHHH
Q 023582 37 TWVTASAHIITAVIGSG-VLSLAWAIAQLGWVAGPAVLMAFSFITYYTS-TLLSDCY--R----SPDPVTGKRNYTYMDV 108 (280)
Q Consensus 37 s~~~a~~~l~~~~iG~G-iL~lP~a~~~~G~i~g~ill~~~~~i~~yt~-~lL~~~~--~----~~~~~~g~~~~sy~~i 108 (280)
|-.+-.+..+.+.+|.| +.-.||-..+-| .|..++...-.+-..+. .++.|.. | +.+ .| ....|+.+
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nG--GgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r--~~-~i~a~~~l 84 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENG--GGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGH--GT-TPAIFYLL 84 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTT--THHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTC--CS-HHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccC--CC-HHHHHHHh
Confidence 44556777788999999 778999888887 22222222222222222 2223321 1 110 01 02234444
Q ss_pred HHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhh
Q 023582 109 VRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKR 149 (280)
Q Consensus 109 ~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~ 149 (280)
. .++....+.....+.++..++-|.++.|=.+.-++.
T Consensus 85 ~----~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~ 121 (519)
T 2a65_A 85 W----RNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIK 121 (519)
T ss_dssp S----CSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c----CCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 221123455666666666666676666665554443
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=43.18 E-value=2e+02 Score=27.17 Aligned_cols=37 Identities=11% Similarity=-0.056 Sum_probs=24.5
Q ss_pred ccHHHHHHH-HcCCcchhhhHHHHHHHHHHHHHhhHhh
Q 023582 103 YTYMDVVRA-SLGGRSVQLCGLAQYGNLIGVTIGYTIT 139 (280)
Q Consensus 103 ~sy~~i~~~-~~G~~g~~~v~i~~~~~~~g~~i~y~i~ 139 (280)
.-|.-++++ ..|+.|+.+=-++++...+|.+++.-..
T Consensus 180 ~l~PllG~r~~~G~~G~~IDilav~atv~GvatSLGlg 217 (539)
T 4ain_A 180 AFVPLIGEKGAEGWLGKLIDILAIIATVFGTACSLGLG 217 (539)
T ss_dssp GGHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhcCCCccCCcchhhhHHHHHHHHHHHHhhhHHHH
Confidence 347888888 7887776444446666677777765443
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=40.19 E-value=1.9e+02 Score=25.41 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=42.0
Q ss_pred cccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhh
Q 023582 102 NYTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKR 149 (280)
Q Consensus 102 ~~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~ 149 (280)
.....++.+..+|+++..++.+...+..++...+++...+..+..+-+
T Consensus 259 ~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~ 306 (445)
T 3l1l_A 259 ASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAAD 306 (445)
T ss_dssp TCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999998888888777664
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=37.14 E-value=2.2e+02 Score=25.10 Aligned_cols=47 Identities=6% Similarity=0.012 Sum_probs=39.9
Q ss_pred ccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhh
Q 023582 103 YTYMDVVRASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKR 149 (280)
Q Consensus 103 ~sy~~i~~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~ 149 (280)
....++.+..+|+++..++.+...+..++...+.+...+..+..+-+
T Consensus 258 ~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 304 (444)
T 3gia_A 258 NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAK 304 (444)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888889999888999999999999999988888888877765
Done!