Query 023582
Match_columns 280
No_of_seqs 120 out of 1376
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 09:18:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023582.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023582hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 43.9 92 0.0067 26.5 18.5 105 37-149 6-117 (509)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 6.1 2.8E+02 0.02 21.1 4.4 28 53-80 15-42 (248)
3 d1sfea1 a.4.2.1 (A:93-176) Ada 5.9 2.5E+02 0.018 17.5 3.4 16 102-117 20-35 (84)
4 d1q90g_ f.23.26.1 (G:) PetG su 5.9 2E+02 0.014 14.2 2.4 15 64-78 7-21 (30)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 5.2 2.1E+02 0.016 13.9 3.0 17 187-203 2-18 (30)
6 d1mgta1 a.4.2.1 (A:89-169) O6- 4.1 2.3E+02 0.017 17.6 2.1 16 102-118 21-36 (81)
7 d1n1jb_ a.22.1.3 (B:) Nuclear 3.8 2.8E+02 0.02 16.5 2.4 37 77-114 29-65 (78)
8 d1qnta1 a.4.2.1 (A:92-176) O6- 3.7 2.9E+02 0.021 17.2 2.4 18 102-119 20-37 (85)
9 d2e74f1 f.23.25.1 (F:1-32) Pet 3.7 3.1E+02 0.022 13.5 2.5 25 241-265 7-31 (32)
10 d2byka1 a.22.1.3 (A:29-100) Ch 3.3 3.9E+02 0.028 15.8 2.7 15 101-115 44-58 (72)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=43.86 E-value=92 Score=26.51 Aligned_cols=105 Identities=13% Similarity=0.037 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHhHhhhhh-hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH------HHHHHcccCCCCCCCCCcccHHHHH
Q 023582 37 TWVTASAHIITAVIGSGV-LSLAWAIAQLGWVAGPAVLMAFSFITYYTS------TLLSDCYRSPDPVTGKRNYTYMDVV 109 (280)
Q Consensus 37 s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G~i~g~ill~~~~~i~~yt~------~lL~~~~~~~~~~~g~~~~sy~~i~ 109 (280)
|..+-.+..+...+|.|= .-.|+-..+-| .|..++...-.+...+. ..+.+..++ |. ...++.+.
T Consensus 6 s~~~fila~~g~avGlGNiWrFPyl~~~nG--GgaFlipY~~~l~l~gvPll~lE~~lGq~~~~-----g~-i~~~~~i~ 77 (509)
T d2a65a1 6 TRLGLILAMAGNAVGLGNFLRFPVQAAENG--GGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA-----QG-HGTTPAIF 77 (509)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTT--THHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-----TT-CCSHHHHH
T ss_pred ChHHHHHHHHHHHhcccHHHhhhHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----Cc-ccHHHHHH
Confidence 455667788888888864 45898876655 12223222222222222 233333332 11 45788888
Q ss_pred HHHcCCcchhhhHHHHHHHHHHHHHhhHhhhhhhHHHHhh
Q 023582 110 RASLGGRSVQLCGLAQYGNLIGVTIGYTITASISMVAVKR 149 (280)
Q Consensus 110 ~~~~G~~g~~~v~i~~~~~~~g~~i~y~i~~~~~l~~l~~ 149 (280)
....+.+.-..+.....+.++..++-|.++.+-.+.-++.
T Consensus 78 ~~~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~ 117 (509)
T d2a65a1 78 YLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIK 117 (509)
T ss_dssp HHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877655555677777777777888888887776655443
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=6.09 E-value=2.8e+02 Score=21.15 Aligned_cols=28 Identities=14% Similarity=-0.120 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 023582 53 GVLSLAWAIAQLGWVAGPAVLMAFSFIT 80 (280)
Q Consensus 53 GiL~lP~a~~~~G~i~g~ill~~~~~i~ 80 (280)
++.+.|.++++.-|.++.+++++..++.
T Consensus 15 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 42 (248)
T d2r6gf1 15 VGYLVVLMYAQGEYLFAITTLILSSAGL 42 (248)
T ss_dssp HHHTHHHHHGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHheE
Confidence 3567899999999998877776665554
No 3
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=5.94 E-value=2.5e+02 Score=17.47 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=12.0
Q ss_pred cccHHHHHHHHcCCcc
Q 023582 102 NYTYMDVVRASLGGRS 117 (280)
Q Consensus 102 ~~sy~~i~~~~~G~~g 117 (280)
..||.|+|+.+=-+..
T Consensus 20 v~TYg~iA~~~g~~~a 35 (84)
T d1sfea1 20 TVSYQQLANAIGKPKA 35 (84)
T ss_dssp CEEHHHHHHHTTCTTC
T ss_pred eeeHHHHHHHhCCccc
Confidence 6899999988743443
No 4
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.93 E-value=2e+02 Score=14.25 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=9.3
Q ss_pred HhhhHHHHHHHHHHH
Q 023582 64 LGWVAGPAVLMAFSF 78 (280)
Q Consensus 64 ~G~i~g~ill~~~~~ 78 (280)
+|+++|.+-..+.++
T Consensus 7 ~GivlGlipiTl~Gl 21 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGL 21 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHH
Confidence 566667666665554
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.20 E-value=2.1e+02 Score=13.86 Aligned_cols=17 Identities=12% Similarity=0.555 Sum_probs=9.2
Q ss_pred hhhhHHHHHHHHHHHHH
Q 023582 187 HKLSWLSILAAVMSFAY 203 (280)
Q Consensus 187 ~~l~~~S~~~~~~~~~~ 203 (280)
.+++++-+++.+..+.+
T Consensus 2 e~i~yv~ifac~i~lff 18 (30)
T d2axtt1 2 ETITYVFIFACIIALFF 18 (30)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ceeehHHHHHHHHHHHH
Confidence 34556666666554443
No 6
>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=4.09 E-value=2.3e+02 Score=17.59 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=11.7
Q ss_pred cccHHHHHHHHcCCcch
Q 023582 102 NYTYMDVVRASLGGRSV 118 (280)
Q Consensus 102 ~~sy~~i~~~~~G~~g~ 118 (280)
..||.++|+.+ |+..|
T Consensus 21 v~TYg~iA~~~-g~~~R 36 (81)
T d1mgta1 21 VITYGDLAKAL-NTSPR 36 (81)
T ss_dssp CEEHHHHHHHT-TSCHH
T ss_pred eEeHHHHHHHc-CCcHH
Confidence 68999999866 55433
No 7
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.79 E-value=2.8e+02 Score=16.55 Aligned_cols=37 Identities=11% Similarity=0.111 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHcccCCCCCCCCCcccHHHHHHHHcC
Q 023582 77 SFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLG 114 (280)
Q Consensus 77 ~~i~~yt~~lL~~~~~~~~~~~g~~~~sy~~i~~~~~G 114 (280)
-+...+..++.-++.+... ..+++..+|.|+.+.+-.
T Consensus 29 ~a~E~Fi~~l~~~A~~~a~-~~~rkti~~~dl~~av~~ 65 (78)
T d1n1jb_ 29 KAAQIFITELTLRAWIHTE-DNKRRTLQRNDIAMAITK 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTTCSEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH-HcCCCcCCHHHHHHHHhc
Confidence 3444444455444432111 134557899999987743
No 8
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.75 E-value=2.9e+02 Score=17.16 Aligned_cols=18 Identities=6% Similarity=0.137 Sum_probs=12.7
Q ss_pred cccHHHHHHHHcCCcchh
Q 023582 102 NYTYMDVVRASLGGRSVQ 119 (280)
Q Consensus 102 ~~sy~~i~~~~~G~~g~~ 119 (280)
..||.++|+.+--+....
T Consensus 20 v~TYg~iA~~~g~p~aaR 37 (85)
T d1qnta1 20 VISYQQLAALAGNPKAAR 37 (85)
T ss_dssp CEEHHHHHHHTTCTTCHH
T ss_pred cccHHHHHHHcCCcchHH
Confidence 689999998864344434
No 9
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.67 E-value=3.1e+02 Score=13.51 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhcCchhhHhhhh
Q 023582 241 WRAFQAIGDVAFAYAFSTVLVEIQA 265 (280)
Q Consensus 241 ~~~~~a~g~~~faf~~~~vi~~I~~ 265 (280)
...+.++|.++..++--..+..||.
T Consensus 7 ~aa~lsfglifvgwglgalllkiqg 31 (32)
T d2e74f1 7 YAALLSFGLIFVGWGLGVLLLKIQG 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHhHHHHHHhhhcC
Confidence 3567888988888887777777664
No 10
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.33 E-value=3.9e+02 Score=15.79 Aligned_cols=15 Identities=7% Similarity=0.093 Sum_probs=11.7
Q ss_pred CcccHHHHHHHHcCC
Q 023582 101 RNYTYMDVVRASLGG 115 (280)
Q Consensus 101 ~~~sy~~i~~~~~G~ 115 (280)
+..+|.|+++.+-..
T Consensus 44 ktl~~~dl~~aV~~~ 58 (72)
T d2byka1 44 EALKYEHLSQVVNKN 58 (72)
T ss_dssp CEECHHHHHHHHHTC
T ss_pred ccccHHHHHHHHccC
Confidence 468999999987543
Done!